Citrus Sinensis ID: 005096
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 715 | 2.2.26 [Sep-21-2011] | |||||||
| Q6NLV4 | 647 | Flowering time control pr | yes | no | 0.855 | 0.945 | 0.686 | 0.0 | |
| Q9C0J8 | 1336 | pre-mRNA 3' end processin | yes | no | 0.646 | 0.345 | 0.474 | 1e-135 | |
| Q8K4P0 | 1330 | pre-mRNA 3' end processin | yes | no | 0.646 | 0.347 | 0.474 | 1e-135 | |
| Q7RY68 | 660 | Polyadenylation factor su | N/A | no | 0.514 | 0.557 | 0.442 | 7e-99 | |
| Q9UTN4 | 509 | Polyadenylation factor su | yes | no | 0.637 | 0.895 | 0.392 | 6e-97 | |
| P0CS47 | 713 | Polyadenylation factor su | N/A | no | 0.580 | 0.582 | 0.407 | 2e-95 | |
| P0CS46 | 712 | Polyadenylation factor su | yes | no | 0.517 | 0.519 | 0.434 | 2e-94 | |
| Q4I7X1 | 612 | Polyadenylation factor su | yes | no | 0.457 | 0.534 | 0.456 | 9e-93 | |
| Q2TZG4 | 610 | Polyadenylation factor su | yes | no | 0.517 | 0.606 | 0.398 | 1e-89 | |
| Q6BVZ3 | 504 | Polyadenylation factor su | yes | no | 0.584 | 0.829 | 0.379 | 6e-83 |
| >sp|Q6NLV4|FY_ARATH Flowering time control protein FY OS=Arabidopsis thaliana GN=FY PE=1 SV=1 | Back alignment and function desciption |
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Score = 832 bits (2148), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 467/680 (68%), Positives = 507/680 (74%), Gaps = 68/680 (10%)
Query: 17 GGGDHFNRGPQPPQPPGPPMMRQPSASSSTLNPPEFHHLPSNPPYDAHGDSFAAKRMRKL 76
GGD +RG Q PQPP MMRQ SASS+ +NP ++HH PS P +D + DSF AKRMRK
Sbjct: 3 AGGD-MHRGSQMPQPP---MMRQSSASSTNINP-DYHH-PSGP-FDPNVDSFGAKRMRKH 55
Query: 77 TQRRAVDYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSFAAKFV 136
TQRRAVDYTSTVVRY+Q R WQRDSRDRT LQ TPAAA+DMLPTVAY+DNPSTSFAAKFV
Sbjct: 56 TQRRAVDYTSTVVRYIQARTWQRDSRDRTTLQPTPAAAVDMLPTVAYSDNPSTSFAAKFV 115
Query: 137 HTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSH 196
H SLNKNRCSINRVLWTP+GRRLITGSQSGEFTLWNGQSFNFEMILQAHD IRSMVWSH
Sbjct: 116 HASLNKNRCSINRVLWTPSGRRLITGSQSGEFTLWNGQSFNFEMILQAHDQPIRSMVWSH 175
Query: 197 NDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWD 256
N+N+MVSGDDGG +KYWQNNMNNVKANK+AHKES+RDLSFC+TDLKFCSCSDDTTVKVWD
Sbjct: 176 NENYMVSGDDGGTLKYWQNNMNNVKANKTAHKESIRDLSFCKTDLKFCSCSDDTTVKVWD 235
Query: 257 FARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVL 316
F +C +E SLTGHGWDVKSVDWHPTKSLLVSGGKD LVKLWD +SGRELCS HGHKN+VL
Sbjct: 236 FTKCVDESSLTGHGWDVKSVDWHPTKSLLVSGGKDQLVKLWDTRSGRELCSLHGHKNIVL 295
Query: 317 CVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLD 376
VKWNQNGNW+LTASKDQIIKLYDIR MKEL+SFRGH KDVT+LAWHP HEEYFVSGS D
Sbjct: 296 SVKWNQNGNWLLTASKDQIIKLYDIRTMKELQSFRGHTKDVTSLAWHPCHEEYFVSGSSD 355
Query: 377 GSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGDTARD 436
GSI HW+VGHE PQ+EI N HDN+VWDLAWHPIGYLLCSGSNDHTTKFWCRNRP D RD
Sbjct: 356 GSICHWIVGHENPQIEIPNAHDNSVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPADNPRD 415
Query: 437 KFNMGQNQGYGEQNAVFAGRMPGNFPLPEGPTTPGPFAPGLTRNEGTIPGVGVAMPLSIP 496
+ QNQGY EQ GR P NF E PG F PGLTRNEGTIPG+G+AMP
Sbjct: 416 V--LMQNQGYNEQG---FGRQPDNFQPSEASPIPGAFVPGLTRNEGTIPGIGIAMP---- 466
Query: 497 SFDSSAQGEQKQPLSMPLGAPPLPPGPHPSLLTANQQQGYQQNPPPMPPQQHQGHPQQMP 556
FD+S+QG+ KQPL + P G Q QQHQGHPQQM
Sbjct: 467 -FDASSQGDHKQPLPGSMALGAPP----LPPGPHPSLLGSGQQQGYQQQQQHQGHPQQM- 520
Query: 557 HLAMPPQNMP--QLQPPSHLPMLQHPHISRPPPQMPQLGMPSPM---PGSLPTPSSHPMS 611
L MP NMP QL P SH+P+ HPH +P PM P P S PMS
Sbjct: 521 -LPMP--NMPHHQLPPSSHMPL--HPH-----------HLPRPMQMPPHGHMPPPSMPMS 564
Query: 612 --MPVPVGMQGSMNQMAPPMQQGHYMGMNPMHSGGGAPPQVGGFPNGMQGPPNSSGPQMY 669
MP +GMQG MN P M Q H+M GAP V QG PNS GPQMY
Sbjct: 565 HQMPGSMGMQGGMN---PQMSQSHFM---------GAPSGV------FQGQPNSGGPQMY 606
Query: 670 PQG-GAFNRPQGQMPMMPGY 688
PQG G FNRPQ M+PGY
Sbjct: 607 PQGRGGFNRPQ----MIPGY 622
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Plays a role in the regulation of flowering time in the autonomous flowering pathway by decreasing FLOWERING LOCUS C mRNA levels. Required for the negative autoregulation of FCA expression. Acts probably as an RNA 3' end-processing factor. Required for growth and development in plants. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9C0J8|WDR33_HUMAN pre-mRNA 3' end processing protein WDR33 OS=Homo sapiens GN=WDR33 PE=1 SV=2 | Back alignment and function description |
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Score = 482 bits (1240), Expect = e-135, Method: Compositional matrix adjust.
Identities = 233/491 (47%), Positives = 305/491 (62%), Gaps = 29/491 (5%)
Query: 67 SFAAKRMRKLTQRRAVDYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDN 126
+F KRMRK R+ +DY +V++Y++ R+WQRD RD +Q D++P + +N
Sbjct: 42 TFDGKRMRKAVNRKTIDYNPSVIKYLENRIWQRDQRDMRAIQPDAGYYNDLVPPIGMLNN 101
Query: 127 PSTSFAAKFVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHD 186
P + KFV TS NK +C + V WTP GRRL+TG+ SGEFTLWNG +FNFE ILQAHD
Sbjct: 102 PMNAVTTKFVRTSTNKVKCPVFVVRWTPEGRRLVTGASSGEFTLWNGLTFNFETILQAHD 161
Query: 187 HAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSC 246
+R+M WSHND WM++ D GG +KYWQ+NMNNVK + AHKE++R+ SF TD KF +C
Sbjct: 162 SPVRAMTWSHNDMWMLTADHGGYVKYWQSNMNNVKMFQ-AHKEAIREASFSPTDNKFATC 220
Query: 247 SDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSL--VKLWDAKSGRE 304
SDD TV++WDF RC EER L GHG DVK VDWHPTK L+VSG KDS +K WD K+G+
Sbjct: 221 SDDGTVRIWDFLRCHEERILRGHGADVKCVDWHPTKGLVVSGSKDSQQPIKFWDPKTGQS 280
Query: 305 LCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMK-ELESFRGHRKDVTALAWH 363
L + H HKN V+ VK N NGNW+LTAS+D + KL+DIR +K EL+ FRGH+K+ TA+AWH
Sbjct: 281 LATLHAHKNTVMEVKLNLNGNWLLTASRDHLCKLFDIRNLKEELQVFRGHKKEATAVAWH 340
Query: 364 PFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTK 423
P HE F SG DGS+ W VG E + H+ +W LAWHP+G++LCSGSNDHT+K
Sbjct: 341 PVHEGLFASGGSDGSLLFWHVGVEKEVGGMEMAHEGMIWSLAWHPLGHILCSGSNDHTSK 400
Query: 424 FWCRNRPGDTARDKFNMGQNQGYGEQNAVFAGRMPGNFPLPEGPTTPGPFAPGLTRN--- 480
FW RNRPGD RD++N+ G E + P + + G P + +
Sbjct: 401 FWTRNRPGDKMRDRYNLNLLPGMSEDGVEYDDLEPNSLAVIPGMGIPEQLKLAMEQEQMG 460
Query: 481 -------EGTIPGVGVAMPLSIPSFDSSAQGEQKQPLSMPLGAPPLPPGPHPSLLTANQQ 533
E TIPG+ M + D ++K P + P + A Q
Sbjct: 461 KDESNEIEMTIPGLDWGM-EEVMQKDQKKVPQKKVPYAKP--------------IPAQFQ 505
Query: 534 QGYQQNPPPMP 544
Q + QN P+P
Sbjct: 506 QAWMQNKVPIP 516
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Essential for both cleavage and polyadenylation of pre-mRNA 3' ends. Homo sapiens (taxid: 9606) |
| >sp|Q8K4P0|WDR33_MOUSE pre-mRNA 3' end processing protein WDR33 OS=Mus musculus GN=Wdr33 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 481 bits (1239), Expect = e-135, Method: Compositional matrix adjust.
Identities = 233/491 (47%), Positives = 305/491 (62%), Gaps = 29/491 (5%)
Query: 67 SFAAKRMRKLTQRRAVDYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDN 126
+F KRMRK R+ +DY +V++Y++ R+WQRD RD +Q D++P + +N
Sbjct: 42 TFDGKRMRKAVNRKTIDYNPSVIKYLENRIWQRDQRDMRAIQPDAGYYNDLVPPIGMLNN 101
Query: 127 PSTSFAAKFVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHD 186
P + KFV TS NK +C + V WTP GRRL+TG+ SGEFTLWNG +FNFE ILQAHD
Sbjct: 102 PMNAVTTKFVRTSTNKVKCPVFVVRWTPEGRRLVTGASSGEFTLWNGLTFNFETILQAHD 161
Query: 187 HAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSC 246
+R+M WSHND WM++ D GG +KYWQ+NMNNVK + AHKE++R+ SF TD KF +C
Sbjct: 162 SPVRAMTWSHNDMWMLTADHGGYVKYWQSNMNNVKMFQ-AHKEAIREASFSPTDNKFATC 220
Query: 247 SDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSL--VKLWDAKSGRE 304
SDD TV++WDF RC EER L GHG DVK VDWHPTK L+VSG KDS +K WD K+G+
Sbjct: 221 SDDGTVRIWDFLRCHEERILRGHGADVKCVDWHPTKGLVVSGSKDSQQPIKFWDPKTGQS 280
Query: 305 LCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMK-ELESFRGHRKDVTALAWH 363
L + H HKN V+ VK N NGNW+LTAS+D + KL+DIR +K EL+ FRGH+K+ TA+AWH
Sbjct: 281 LATLHAHKNTVMEVKLNLNGNWLLTASRDHLCKLFDIRNLKEELQVFRGHKKEATAVAWH 340
Query: 364 PFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTK 423
P HE F SG DGS+ W VG E + H+ +W LAWHP+G++LCSGSNDHT+K
Sbjct: 341 PVHEGLFASGGSDGSLLFWHVGVEKEVGGMEMAHEGMIWSLAWHPLGHILCSGSNDHTSK 400
Query: 424 FWCRNRPGDTARDKFNMGQNQGYGEQNAVFAGRMPGNFPLPEGPTTPGPFAPGLTRN--- 480
FW RNRPGD RD++N+ G E + P + + G P + +
Sbjct: 401 FWTRNRPGDKMRDRYNLNLLPGMSEDGVEYDDLEPNSLAVIPGMGIPEQLKLAMEQEQMG 460
Query: 481 -------EGTIPGVGVAMPLSIPSFDSSAQGEQKQPLSMPLGAPPLPPGPHPSLLTANQQ 533
E TIPG+ M + D ++K P + P + A Q
Sbjct: 461 KDESSEIEMTIPGLDWGM-EEVMQKDQKKVPQKKVPYAKP--------------IPAQFQ 505
Query: 534 QGYQQNPPPMP 544
Q + QN P+P
Sbjct: 506 QAWMQNKVPIP 516
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Essential for both cleavage and polyadenylation of pre-mRNA 3' ends. Mus musculus (taxid: 10090) |
| >sp|Q7RY68|PFS2_NEUCR Polyadenylation factor subunit 2 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=pfs-2 PE=3 SV=2 | Back alignment and function description |
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Score = 362 bits (928), Expect = 7e-99, Method: Compositional matrix adjust.
Identities = 178/402 (44%), Positives = 252/402 (62%), Gaps = 34/402 (8%)
Query: 74 RKLTQRRAVDYTSTVVRYMQIRM-WQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSFA 132
R +R DY ++VV YM+ R R S V + +P+ +DMLP A NP+ S
Sbjct: 25 RNRGRRPVTDYGASVVHYMRHRQPRYRGSYAGEVERPSPSYIVDMLPPYARVTNPADSVP 84
Query: 133 AKFVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSM 192
++ +H+SLNK + IN V WTP GRRL+T S SGEFTLWNG FNFE I+QAHD AIR++
Sbjct: 85 SRHLHSSLNKIKHPINVVRWTPEGRRLLTASSSGEFTLWNGTGFNFETIMQAHDSAIRAL 144
Query: 193 VWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTV 252
V+SH+D+W+VS D G IKYWQ N NNV++ + H + +RDL+F D KF + SDD T+
Sbjct: 145 VYSHSDDWLVSADHDGIIKYWQPNFNNVESIR-GHTDPIRDLAFSPNDTKFVTASDDQTL 203
Query: 253 KVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHK 312
KV+DFA + +LTGHGWD KS DWHP++ L+VSG KD LVKLWD ++GR L + HGHK
Sbjct: 204 KVFDFAGGSTDMTLTGHGWDAKSCDWHPSRGLIVSGSKDHLVKLWDPRTGRCLTTLHGHK 263
Query: 313 NMVLCVKWNQ-NGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFV 371
N + + + GN + T+++DQ +++D+R M+++ RGH KD++ L WHP H
Sbjct: 264 NTITKTLFERVQGNCLATSARDQTARVFDLRMMRDIALLRGHEKDISTLTWHPVHSNLLS 323
Query: 372 SGSLDGSIFHWLVG----------------HET------------PQVEIHNVHDNTVWD 403
+G DGS+FH+L+ ++T P +I HD +W
Sbjct: 324 TGGSDGSLFHYLLDEPNTAPDGSVMPIPAVYDTADPSSAPAQPIYPAHKIPYAHDFAIWS 383
Query: 404 LAWHPIGYLLCSGSNDHTTKFWCRNRPG---DTARDKFNMGQ 442
L WHP+G++L SGSND T+FW R RPG ++ D++++G+
Sbjct: 384 LDWHPLGHILASGSNDRITRFWSRARPGEAPESFNDRYHIGE 425
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Required for 3'-end cleavage and polyadenylation of pre-mRNAs. Also involved in chromosome segregation where it has a role in chromosome attachment to the mitotic spindle. Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110) |
| >sp|Q9UTN4|PFS2_SCHPO Polyadenylation factor subunit 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pfs2 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 355 bits (911), Expect = 6e-97, Method: Compositional matrix adjust.
Identities = 202/515 (39%), Positives = 287/515 (55%), Gaps = 59/515 (11%)
Query: 70 AKRMRKLTQRRAVDYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPST 129
A+ ++K RR VDY S + +Y+ R + + V + P I++ P Y N ++
Sbjct: 7 ARIIQKPMTRRTVDYGSGLSKYIVNRHLRSNRYHIHVPRPNPNQIINLYPPYEYKYNNTS 66
Query: 130 SFAAKFVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAI 189
S K++HTS NK R IN V WTP GRRL+TGS +GEFTLWNG +FNFE+I Q+HD+A+
Sbjct: 67 SLCTKYIHTSANKARHVINVVRWTPDGRRLLTGSSTGEFTLWNGLTFNFELINQSHDYAV 126
Query: 190 RSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDD 249
R WS + W++SGD GG +KY++ N+NNVK + AH+ VRD++F D KF + SDD
Sbjct: 127 RCAEWSTDGRWLISGDGGGMVKYFEPNLNNVKIVQ-AHEMEVRDVAFSPNDSKFVTASDD 185
Query: 250 TTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFH 309
++KVW+F EE LTGHGWDVK+VDWHP+K LL SG KD+LVK WD ++G + + H
Sbjct: 186 GSLKVWNFHMSTEELKLTGHGWDVKTVDWHPSKGLLASGSKDNLVKFWDPRTGTCIATLH 245
Query: 310 GHKNMVLCVKWNQN--GNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHE 367
GHKN ++ + +N N++ T S+D +++D+RAMK++ RGH KDV + WHP +
Sbjct: 246 GHKNTIMQASFQKNFGSNYLATVSRDSTCRVFDLRAMKDVRVLRGHEKDVNCVTWHPLYP 305
Query: 368 EYFVSGSLDGSIFHWLVG----------HET--------------PQVEIHNVHDNTVWD 403
+G DGS+ H+ + HE P EI HD +W
Sbjct: 306 NLLTTGGSDGSVNHYSLDEPPLLSQQKYHEKHPNVTLSASSYLLYPTAEIPFAHDLGIWS 365
Query: 404 LAWHPIGYLLCSGSNDHTTKFWCRNRPGD--TARDKFNMGQNQGYGEQNAVFAGRMPG-- 459
+ +HP+G+LLC+GSND TT+FW R+RP D + D+ ++G+ Q A+ + R
Sbjct: 366 MQYHPLGHLLCTGSNDKTTRFWSRSRPDDKESTMDRHHLGEEQS----EAMLSQRKAAIE 421
Query: 460 ---NFPLPEGPTTP------GPFAPGLTRNEGTIPGVGVAMPLSIPSFDSSAQGEQKQP- 509
N+ E P T P G+ +PG+G ++PSF S Q Q Q
Sbjct: 422 EDDNYEPDENPLTETLANAHNPQFSGVL----NLPGLG-----TMPSFPSPYQHGQPQIP 472
Query: 510 --LSMPLGAPPLPPGPHPSL---LTANQQQGYQQN 539
L L P S LT+ Q GY QN
Sbjct: 473 GMLHASLSNSYAEPSTQNSFIPGLTSKSQDGYPQN 507
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Required for 3'-end cleavage and polyadenylation of pre-mRNAs. Also involved in chromosome segregation where it has a role in chromosome attachment to the mitotic spindle. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|P0CS47|PFS2_CRYNB Polyadenylation factor subunit 2 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=PFS2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 350 bits (898), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 171/420 (40%), Positives = 249/420 (59%), Gaps = 5/420 (1%)
Query: 72 RMRKLTQRRAVDYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSF 131
R RK+ RR VDY V ++ + + R + P+ ++ LP VA NPSTS
Sbjct: 61 RKRKIKPRRTVDYQGGVQKWRMLNKLKGVHEFRPAIHPNPSDIVNFLPPVALRSNPSTSI 120
Query: 132 AAKFVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRS 191
+VHTS+NK R V WTP RRL+TG+ G+FTLWNG SFN+E I Q HD +IRS
Sbjct: 121 CDYWVHTSINKERSPTRVVRWTPDARRLLTGNDKGQFTLWNGASFNYESITQVHDDSIRS 180
Query: 192 MVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTT 251
+SHN +VS D GG IKY+ ++ N+ + H+E+ D+S+ D +F +C DD
Sbjct: 181 FTYSHNGQALVSADKGGTIKYFTPHLTNIHGFQ-GHREACHDVSWSPNDERFVTCGDDGL 239
Query: 252 VKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGH 311
VK+W + +EERSL+GHGWDV+ VDWHPTK L+VSG KD LVK WD ++G++L + H
Sbjct: 240 VKIWSYREAKEERSLSGHGWDVRCVDWHPTKGLIVSGSKDMLVKFWDPRTGKDLSTLHSS 299
Query: 312 KNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFV 371
K+ + +W+ +G+ V TA +D +I+L+DIR +ELE +GH K+V + WHP H V
Sbjct: 300 KSTINTCRWSPDGHLVATAGQDSVIRLFDIRTFRELEVLKGHEKEVNCIEWHPIHHSLLV 359
Query: 372 SGSLDGSIFHWLVGHETPQVEIHNV---HDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRN 428
SG G+I ++ + TP I + H++ V+ L++HP+G++LCSGS D T +FWCR
Sbjct: 360 SGDALGTINYFSLLSPTPSTPITTLSAAHEDAVFSLSFHPLGHILCSGSKDFTARFWCRA 419
Query: 429 R-PGDTARDKFNMGQNQGYGEQNAVFAGRMPGNFPLPEGPTTPGPFAPGLTRNEGTIPGV 487
R PG DK+++ + ++ R G LP G G + + +PG+
Sbjct: 420 RPPGGQEFDKWHLTEEGAAQKELERITKREWGTNALPANAAGGGGGGGGGDKQQVALPGL 479
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Required for 3'-end cleavage and polyadenylation of pre-mRNAs. Also involved in chromosome segregation where it has a role in chromosome attachment to the mitotic spindle. Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) (taxid: 283643) |
| >sp|P0CS46|PFS2_CRYNJ Polyadenylation factor subunit 2 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=PFS2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 347 bits (890), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 163/375 (43%), Positives = 235/375 (62%), Gaps = 5/375 (1%)
Query: 72 RMRKLTQRRAVDYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSF 131
R RK+ RR VDY V ++ + + R + P+ ++ LP VA NPSTS
Sbjct: 61 RKRKIKPRRTVDYQGGVQKWRMLNKLKGVHEFRPAIHPNPSDIVNFLPPVALRSNPSTSI 120
Query: 132 AAKFVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRS 191
+VHTS+NK R V WTP RRL+TG+ G+FTLWNG SFN+E I Q HD +IRS
Sbjct: 121 CDYWVHTSINKERSPTRVVRWTPDARRLLTGNDKGQFTLWNGASFNYESITQVHDDSIRS 180
Query: 192 MVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTT 251
+SHN +VS D GG IKY+ ++ N+ + H+E+ D+S+ D +F +C DD
Sbjct: 181 FTYSHNGQALVSADKGGTIKYFTPHLTNIHGFQ-GHREACHDVSWSPNDERFVTCGDDGL 239
Query: 252 VKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGH 311
VK+W + +EERSL+GHGWDV+ VDWHPTK L+VSG KD LVK WD ++G++L + H
Sbjct: 240 VKIWSYREAKEERSLSGHGWDVRCVDWHPTKGLIVSGSKDMLVKFWDPRTGKDLSTLHSS 299
Query: 312 KNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFV 371
K+ + +W+ +G+ V TA +D +I+L+DIR +ELE +GH K+V + WHP H V
Sbjct: 300 KSTINTCRWSPDGHLVATAGQDSVIRLFDIRTFRELEVLKGHEKEVNCIEWHPIHHSLLV 359
Query: 372 SGSLDGSIFHWLVGHETPQVEIHNV---HDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRN 428
SG G+I ++ + TP I + H++ V+ L++HP+G++LCSGS D T +FWCR
Sbjct: 360 SGDALGTINYFSLLSPTPSTPITTLSAAHEDAVFSLSFHPLGHILCSGSKDFTARFWCRA 419
Query: 429 R-PGDTARDKFNMGQ 442
R PG DK+++ +
Sbjct: 420 RPPGGQEFDKWHLTE 434
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Required for 3'-end cleavage and polyadenylation of pre-mRNAs. Also involved in chromosome segregation where it has a role in chromosome attachment to the mitotic spindle. Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) (taxid: 214684) |
| >sp|Q4I7X1|PFS2_GIBZE Polyadenylation factor subunit 2 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=PFS2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 342 bits (876), Expect = 9e-93, Method: Compositional matrix adjust.
Identities = 163/357 (45%), Positives = 229/357 (64%), Gaps = 30/357 (8%)
Query: 115 IDMLPTVAYTDNPSTSFAAKFVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQ 174
+DMLP A + S K +H+SLNK + IN V WTP GRRL+T S SGEFTLWNG
Sbjct: 66 VDMLPPAARVTKAADSIPIKHLHSSLNKIKHPINVVRWTPEGRRLLTASTSGEFTLWNGT 125
Query: 175 SFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDL 234
FNFE I+QAHD AIR++ +SH+D+W++S D GA+KYWQ N NNV++ +AH + +RDL
Sbjct: 126 GFNFETIMQAHDSAIRALEYSHSDDWLISADHDGAVKYWQPNFNNVQS-INAHTDPIRDL 184
Query: 235 SFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLV 294
+F +D KF + SDD+T+K++DFA Q E L GHGWD KSVDWHPTK LLVSG KD LV
Sbjct: 185 AFSPSDSKFVTASDDSTLKIFDFALGQMESKLEGHGWDAKSVDWHPTKGLLVSGSKDHLV 244
Query: 295 KLWDAKSGRELCSFHGHKNMVLCVKWNQ-NGNWVLTASKDQIIKLYDIRAMKELESFRGH 353
KLWD ++ R L + HGHK+ + V + + G + T+++DQ +++D+R M+++ +GH
Sbjct: 245 KLWDPRTSRCLTTLHGHKSTITKVLFEKVRGACLATSARDQTARVFDLRMMRDICLLKGH 304
Query: 354 RKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHET------------------------- 388
KD++ L WHP H +G +DGS+FH+L+
Sbjct: 305 EKDISTLTWHPVHPNLLSTGGMDGSLFHYLLDSPNPPPGQSFTVAPYDSPDPTTVPAQSV 364
Query: 389 -PQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGDTA--RDKFNMGQ 442
P ++ HD +W L WHP+G++L SGSND T+FW R RPGD +D++++G+
Sbjct: 365 WPTHKVPYAHDYAIWSLDWHPLGHILASGSNDRITRFWSRARPGDAEVFQDRYHIGE 421
|
Required for 3'-end cleavage and polyadenylation of pre-mRNAs. Also involved in chromosome segregation where it has a role in chromosome attachment to the mitotic spindle. Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) (taxid: 229533) |
| >sp|Q2TZG4|PFS2_ASPOR Polyadenylation factor subunit 2 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=pfs2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 331 bits (849), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 161/404 (39%), Positives = 240/404 (59%), Gaps = 34/404 (8%)
Query: 79 RRAVDYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAI-DMLPTVAYTDNPSTSFAAKFVH 137
R DY S++V++M+ R + R + A+ I DMLP +A +P + + +H
Sbjct: 32 RLVTDYGSSLVQWMRTRRPRYKGGHRMETERPSASYIVDMLPPLARIHSPVDTIPVRHLH 91
Query: 138 TSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAH----DHAIRSMV 193
S+ K++ I V WTP GRRL+TG +GEF LWNG +FNFE ++ AH + S+
Sbjct: 92 QSIGKSKKPITVVRWTPEGRRLLTGGHTGEFMLWNGTAFNFETVMDAHYDQLQAGVTSLA 151
Query: 194 WSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVK 253
WSH+ +W++SG G IKYW+ N NNV+ AH ++VRDL++ +D KF S SDDTT+K
Sbjct: 152 WSHSHDWLISGGQKGDIKYWRPNFNNVETIDDAHHDAVRDLAWSPSDTKFLSASDDTTLK 211
Query: 254 VWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKN 313
++DF + LTGH WDVKS DWHPTK LLVSG KD VK WD ++ R L + H HKN
Sbjct: 212 IFDFTSRTADTVLTGHNWDVKSCDWHPTKGLLVSGSKDHQVKFWDPRTARCLTTLHSHKN 271
Query: 314 MVLCVKWNQ-NGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVS 372
V ++++ N N + T+S+DQ +++D+R M+++ RGH K V++L WHP H +
Sbjct: 272 TVTATRFSRVNQNLLATSSRDQTARVFDLRMMRDICILRGHEKPVSSLTWHPIHSSLIST 331
Query: 373 GSLDGSIFHWLVGH------ETPQV--------------------EIHNVHDNTVWDLAW 406
GS DGS++H+L+ + P + + H T+W L W
Sbjct: 332 GSEDGSLYHYLLDEPNVPSGQIPTIAPYDSPDPANTPAQVIYPAHRVQYAHSATIWSLDW 391
Query: 407 HPIGYLLCSGSNDHTTKFWCRNRPGDTA--RDKFNMGQNQGYGE 448
HP+G++L SGS D+ T+FW R RPG+T+ +D+F++G+ +
Sbjct: 392 HPLGHILASGSKDNFTRFWSRARPGETSYMKDRFHIGEEAAEAQ 435
|
Required for 3'-end cleavage and polyadenylation of pre-mRNAs. Also involved in chromosome segregation where it has a role in chromosome attachment to the mitotic spindle. Aspergillus oryzae (strain ATCC 42149 / RIB 40) (taxid: 510516) |
| >sp|Q6BVZ3|PFS2_DEBHA Polyadenylation factor subunit 2 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=PFS2 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 309 bits (791), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 174/459 (37%), Positives = 248/459 (54%), Gaps = 41/459 (8%)
Query: 70 AKRMRKLTQRRAVDYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPS- 128
A + +K RR VD+ + + R+ R D + ++ + ID+LP+ AY N
Sbjct: 39 ASQEKKTAYRRTVDHGNNMGRWYINRSLGIDDQPIGKIRPESSYLIDLLPSPAYASNSVR 98
Query: 129 --------TSFAAKFVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEM 180
KFVH S NK + SIN V WTP GRRL+ S SGEFT+WNG +FNFE
Sbjct: 99 ENKNNMSIMDIQTKFVHLSSNKAKHSINTVKWTPEGRRLLVASHSGEFTVWNGMTFNFET 158
Query: 181 ILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTD 240
I+QAHD AI S+ +SHND W++SGD G IKYWQ N NNV + H + +RD++F D
Sbjct: 159 IMQAHDSAILSLKYSHNDEWLLSGDQSGVIKYWQTNFNNVNI-INGHSDGIRDIAFSPND 217
Query: 241 LKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAK 300
KF +CSDD+T+K+W+F QEERSL GH WDVKS DWHP L+VSG KD+L+KLWD +
Sbjct: 218 SKFLTCSDDSTMKIWNFNNGQEERSLVGHHWDVKSADWHPNLGLIVSGSKDNLIKLWDPR 277
Query: 301 SGRELCSFHGHKNMVLCVKWNQNGNWVLTA--SKDQIIKLYDIRAMKELESFRGHRKDVT 358
+ + + HG K+ + K+ G L A S+D+ +++D+R MK++ R H D++
Sbjct: 278 ASSCVSTLHGFKHTITKTKFQPTGTKRLLASVSRDKSCRIFDLRTMKDILVIRDHETDLS 337
Query: 359 ALAWHPFHEEYFVSGSLDGSIFHWLVG---------------HETPQVEIHNV---HDNT 400
+ WHP H + + DGS+ H+++ +P H + H+
Sbjct: 338 CVEWHPVHPSMITTAAYDGSMNHYIMDSYISDNNIKNDSNNNSTSPIEASHKIPYAHEKA 397
Query: 401 VWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGD--TARDKFNMGQNQG---YGEQNAVFAG 455
+ L +HP+G+LLCS D + +FW R RP D + +D G YG N + A
Sbjct: 398 IHALEYHPLGHLLCSAGADRSARFWSRARPNDPMSFQDALYTNDKVGAWYYGVNNNINAV 457
Query: 456 RMPGNFPL-PEGPTTPGPF-APGLTR----NEGTIPGVG 488
P + + P++ PGL NE T G G
Sbjct: 458 IEPSTASVNKDDPSSAQAINLPGLNNLPNGNESTTNGWG 496
|
Required for 3'-end cleavage and polyadenylation of pre-mRNAs. Also involved in chromosome segregation where it has a role in chromosome attachment to the mitotic spindle. Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) (taxid: 284592) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 715 | ||||||
| 255544005 | 727 | WD-repeat protein, putative [Ricinus com | 0.994 | 0.977 | 0.801 | 0.0 | |
| 296090356 | 699 | unnamed protein product [Vitis vinifera] | 0.906 | 0.927 | 0.787 | 0.0 | |
| 359495038 | 730 | PREDICTED: flowering time control protei | 0.897 | 0.879 | 0.785 | 0.0 | |
| 449445059 | 725 | PREDICTED: LOW QUALITY PROTEIN: flowerin | 0.900 | 0.888 | 0.793 | 0.0 | |
| 356546364 | 713 | PREDICTED: flowering time control protei | 0.917 | 0.920 | 0.788 | 0.0 | |
| 356556823 | 714 | PREDICTED: flowering time control protei | 0.917 | 0.918 | 0.787 | 0.0 | |
| 140068416 | 745 | WD40-like [Medicago truncatula] | 0.886 | 0.851 | 0.801 | 0.0 | |
| 357515041 | 794 | Flowering time control protein FY [Medic | 0.864 | 0.778 | 0.788 | 0.0 | |
| 218189742 | 717 | hypothetical protein OsI_05213 [Oryza sa | 0.903 | 0.900 | 0.678 | 0.0 | |
| 222619877 | 717 | hypothetical protein OsJ_04772 [Oryza sa | 0.903 | 0.900 | 0.678 | 0.0 |
| >gi|255544005|ref|XP_002513065.1| WD-repeat protein, putative [Ricinus communis] gi|223548076|gb|EEF49568.1| WD-repeat protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1037 bits (2681), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 586/731 (80%), Positives = 616/731 (84%), Gaps = 20/731 (2%)
Query: 1 MMYGDPQ---QHHNQQQPGGGGDHFNRGPQPPQPPGPPMMRQPSASSSTLNPPEFHHLPS 57
MMYGD Q Q G F RGP PP PP MMRQPSASS+TLN +FHH P
Sbjct: 1 MMYGDHQFQQQQQQPPPQPQPGGEFLRGPPPPPPP---MMRQPSASSTTLNSSDFHHPPG 57
Query: 58 NPP----YDAHGDSFAAKRMRKLTQRRAVDYTSTVVRYMQIRMWQRDSRDRTVLQATPAA 113
P YD HGD+ A+RMRKLTQRRAVDYTSTVVRYMQIRMWQRDSRDRTVLQ TPAA
Sbjct: 58 PAPPQPPYDVHGDNIGARRMRKLTQRRAVDYTSTVVRYMQIRMWQRDSRDRTVLQPTPAA 117
Query: 114 AIDMLPTVAYTDNPSTSFAAKFVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNG 173
AIDMLPT AY++NPSTSFAAKFVHTSLNKNRCSINRVLWTP GRRLITGSQSGEFTLWNG
Sbjct: 118 AIDMLPTAAYSENPSTSFAAKFVHTSLNKNRCSINRVLWTPNGRRLITGSQSGEFTLWNG 177
Query: 174 QSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRD 233
QSFNFEMILQAHD AIRSMVWSHNDNWMVSGDDGGAIKYWQ+NMNNVKANK+AHKESVRD
Sbjct: 178 QSFNFEMILQAHDQAIRSMVWSHNDNWMVSGDDGGAIKYWQSNMNNVKANKNAHKESVRD 237
Query: 234 LSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSL 293
LSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKD+L
Sbjct: 238 LSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDNL 297
Query: 294 VKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGH 353
VKLWDAKS RELCSFHGHKN VLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGH
Sbjct: 298 VKLWDAKSERELCSFHGHKNTVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGH 357
Query: 354 RKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLL 413
RKDVTALAWHPFHEEYFVSGS DGSIFHWLVGHETPQ+E+ N HDN+VWDLAWHPIGYLL
Sbjct: 358 RKDVTALAWHPFHEEYFVSGSFDGSIFHWLVGHETPQIEVPNAHDNSVWDLAWHPIGYLL 417
Query: 414 CSGSNDHTTKFWCRNRPGDTARDKFNMGQNQGYGEQNAVFAGRMPGNFPLPEGPTTPGPF 473
CSGSNDHTTKFWCRNRPGDTAR+KFNMGQNQGYGEQN AGR+PGNFP+PE PTTPGPF
Sbjct: 418 CSGSNDHTTKFWCRNRPGDTAREKFNMGQNQGYGEQNPALAGRLPGNFPVPEPPTTPGPF 477
Query: 474 APGLTRNEGTIPGVGVAMPLSIPSFDSSAQGEQKQPL--SMPLGAPPLPPGPHPSLLTAN 531
APGL RNEGTIPG+G AMPLSIPS D ++QGEQKQPL SMPLGAPPLPPGPHPSLLTAN
Sbjct: 478 APGLARNEGTIPGIGAAMPLSIPSLDGTSQGEQKQPLPISMPLGAPPLPPGPHPSLLTAN 537
Query: 532 QQQGYQQNPPPMPPQQHQGHPQQMPHLAMPPQNMPQLQPPSHLPMLQHPHISRPPPQMPQ 591
QQQGYQQNP MP QQHQ PQQMP L MPP NM QLQ P L P QMP
Sbjct: 538 QQQGYQQNPQQMPQQQHQALPQQMPSLPMPPPNMQQLQ-PPSHLPLLPHPHLPRPQQMPP 596
Query: 592 LGMPSPMPGSLPTPSSHPMSMPVPVGMQGSMNQMAPPMQQGHYMGMNPMHSGG---GAPP 648
GMP + G P+SH + M P+GMQG+MNQM PPM QGH+MGMN MHSG A P
Sbjct: 597 HGMPGTLSGPSSIPASHAVPMAGPMGMQGTMNQMVPPMPQGHFMGMNQMHSGSLPTSAAP 656
Query: 649 QVGGFPNG---MQGPPNSSGPQMYPQGGAFNRPQ-GQMPMMPGYNPFQSGNQSGMAPPPP 704
VGGFPNG MQGP N++G MYPQGG FNRPQ GQMPMMPG+NP+QSG+QSGM P
Sbjct: 657 PVGGFPNGLPNMQGPSNATGAPMYPQGGPFNRPQGGQMPMMPGFNPYQSGSQSGMPLSLP 716
Query: 705 PGPPPHGQSQQ 715
PGPPPH Q+ Q
Sbjct: 717 PGPPPHSQTPQ 727
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296090356|emb|CBI40175.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1014 bits (2621), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 530/673 (78%), Positives = 562/673 (83%), Gaps = 25/673 (3%)
Query: 36 MMRQPSASSSTLNPPEFHHLPSNPPYDAHGDSFAAKRMRKLTQRRAVDYTSTVVRYMQIR 95
MMRQPSASS+ L PE+HH PS PPYDAH DSFAAKRMRKL QRRAVDYTSTVVRYMQIR
Sbjct: 1 MMRQPSASSTNL-APEYHH-PSAPPYDAHADSFAAKRMRKLAQRRAVDYTSTVVRYMQIR 58
Query: 96 MWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSFAAKFVHTSLNKNRCSINRVLWTPT 155
MWQRDSRDRTVLQ TPAAAID+LP VAY+DNPSTSFAAKFVHTSLNKNRCSINRVLWTPT
Sbjct: 59 MWQRDSRDRTVLQPTPAAAIDLLPAVAYSDNPSTSFAAKFVHTSLNKNRCSINRVLWTPT 118
Query: 156 GRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQN 215
GRRLITGSQSGEFTLWNGQSFNFEMILQAHD AIRSMVWSHN+NWMV+GDDGG+IKYWQN
Sbjct: 119 GRRLITGSQSGEFTLWNGQSFNFEMILQAHDQAIRSMVWSHNENWMVTGDDGGSIKYWQN 178
Query: 216 NMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKS 275
NMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQE+RSL+GHGWDVKS
Sbjct: 179 NMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEDRSLSGHGWDVKS 238
Query: 276 VDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQI 335
VDWHPTKSLLVSGGKD+LVKLWDAK+GRELCSFHGHKN VLCVKWNQNGNWVLTASKDQI
Sbjct: 239 VDWHPTKSLLVSGGKDNLVKLWDAKTGRELCSFHGHKNTVLCVKWNQNGNWVLTASKDQI 298
Query: 336 IKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHN 395
IKLYDIRAMKELESFRGHRKDVTALAWHPFHE+YFVSGS DGSIFHWLVGHETPQVEI
Sbjct: 299 IKLYDIRAMKELESFRGHRKDVTALAWHPFHEDYFVSGSFDGSIFHWLVGHETPQVEIPG 358
Query: 396 VHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGDTARDKFNMGQNQGYGEQNAVFAG 455
HDN+VWDLAWHPIGY+LCSGSNDHTTKFWCRNRPGDT RDKFNMG NQGYG+QN G
Sbjct: 359 AHDNSVWDLAWHPIGYILCSGSNDHTTKFWCRNRPGDTVRDKFNMGHNQGYGDQNPALGG 418
Query: 456 RMPGNFPLPEGPTTPGPFAPGLTRNEGTIPGVGVAMPLSIPSFDSSAQGEQKQPLSMPLG 515
RMPGNFP+PE PTTPGPFA GLTRNEGTIPGVGVAMPL+IPS D+SAQGEQKQPL + +
Sbjct: 419 RMPGNFPVPETPTTPGPFAAGLTRNEGTIPGVGVAMPLTIPSLDTSAQGEQKQPLPVSIP 478
Query: 516 APPLPPGPHPSLLTANQQQGYQQNPPPMP-PQQHQGHPQQMPHLAMPPQNMPQLQPPSHL 574
P P P Q P PQ HQ PQQMP L + P NM QLQ P
Sbjct: 479 LGAPPLPPGPHPSLLAANQQQAYQQNPPQMPQHHQALPQQMPPLPLQPPNMSQLQ-PPSH 537
Query: 575 PMLQHPHISRPPPQMPQLGM----PSPMPGSLPTPS---SHPMSMPVPVGMQGSMNQMAP 627
L PPQ+P +GM PS MPGSLP PS S P+ MP P+GMQG+MNQM P
Sbjct: 538 LPLLPHPHLPRPPQLPPMGMPSNIPSSMPGSLPMPSMPTSLPLQMPAPMGMQGAMNQMGP 597
Query: 628 PMQQGHYMGMNPMHSG----GGAPPQVGGFPNGMQGPPNSSGPQMYPQGGAFNR-PQGQM 682
PM QGH+MGMNPMH+G GG PP +G F QG G QMY GG+FNR P GQM
Sbjct: 598 PMPQGHFMGMNPMHAGSLPTGGVPPPIGSF----QG-----GAQMYAPGGSFNRAPAGQM 648
Query: 683 PMMPGYNPFQSGN 695
PMMPG NP+Q+GN
Sbjct: 649 PMMPGLNPYQTGN 661
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359495038|ref|XP_002267704.2| PREDICTED: flowering time control protein FY-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1002 bits (2591), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 523/666 (78%), Positives = 555/666 (83%), Gaps = 24/666 (3%)
Query: 43 SSSTLNPPEFHHLPSNPPYDAHGDSFAAKRMRKLTQRRAVDYTSTVVRYMQIRMWQRDSR 102
+SST PE+HH PS PPYDAH DSFAAKRMRKL QRRAVDYTSTVVRYMQIRMWQRDSR
Sbjct: 38 ASSTNLAPEYHH-PSAPPYDAHADSFAAKRMRKLAQRRAVDYTSTVVRYMQIRMWQRDSR 96
Query: 103 DRTVLQATPAAAIDMLPTVAYTDNPSTSFAAKFVHTSLNKNRCSINRVLWTPTGRRLITG 162
DRTVLQ TPAAAID+LP VAY+DNPSTSFAAKFVHTSLNKNRCSINRVLWTPTGRRLITG
Sbjct: 97 DRTVLQPTPAAAIDLLPAVAYSDNPSTSFAAKFVHTSLNKNRCSINRVLWTPTGRRLITG 156
Query: 163 SQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKA 222
SQSGEFTLWNGQSFNFEMILQAHD AIRSMVWSHN+NWMV+GDDGG+IKYWQNNMNNVKA
Sbjct: 157 SQSGEFTLWNGQSFNFEMILQAHDQAIRSMVWSHNENWMVTGDDGGSIKYWQNNMNNVKA 216
Query: 223 NKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTK 282
NKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQE+RSL+GHGWDVKSVDWHPTK
Sbjct: 217 NKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEDRSLSGHGWDVKSVDWHPTK 276
Query: 283 SLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIR 342
SLLVSGGKD+LVKLWDAK+GRELCSFHGHKN VLCVKWNQNGNWVLTASKDQIIKLYDIR
Sbjct: 277 SLLVSGGKDNLVKLWDAKTGRELCSFHGHKNTVLCVKWNQNGNWVLTASKDQIIKLYDIR 336
Query: 343 AMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVW 402
AMKELESFRGHRKDVTALAWHPFHE+YFVSGS DGSIFHWLVGHETPQVEI HDN+VW
Sbjct: 337 AMKELESFRGHRKDVTALAWHPFHEDYFVSGSFDGSIFHWLVGHETPQVEIPGAHDNSVW 396
Query: 403 DLAWHPIGYLLCSGSNDHTTKFWCRNRPGDTARDKFNMGQNQGYGEQNAVFAGRMPGNFP 462
DLAWHPIGY+LCSGSNDHTTKFWCRNRPGDT RDKFNMG NQGYG+QN GRMPGNFP
Sbjct: 397 DLAWHPIGYILCSGSNDHTTKFWCRNRPGDTVRDKFNMGHNQGYGDQNPALGGRMPGNFP 456
Query: 463 LPEGPTTPGPFAPGLTRNEGTIPGVGVAMPLSIPSFDSSAQGEQKQPLSMPLGAPPLPPG 522
+PE PTTPGPFA GLTRNEGTIPGVGVAMPL+IPS D+SAQGEQKQPL + + P
Sbjct: 457 VPETPTTPGPFAAGLTRNEGTIPGVGVAMPLTIPSLDTSAQGEQKQPLPVSIPLGAPPLP 516
Query: 523 PHPSLLTANQQQGYQQNPPPMP-PQQHQGHPQQMPHLAMPPQNMPQLQPPSHLPMLQHPH 581
P P Q P PQ HQ PQQMP L + P NM QLQ P L
Sbjct: 517 PGPHPSLLAANQQQAYQQNPPQMPQHHQALPQQMPPLPLQPPNMSQLQ-PPSHLPLLPHP 575
Query: 582 ISRPPPQMPQLGM----PSPMPGSLPTPS---SHPMSMPVPVGMQGSMNQMAPPMQQGHY 634
PPQ+P +GM PS MPGSLP PS S P+ MP P+GMQG+MNQM PPM QGH+
Sbjct: 576 HLPRPPQLPPMGMPSNIPSSMPGSLPMPSMPTSLPLQMPAPMGMQGAMNQMGPPMPQGHF 635
Query: 635 MGMNPMHSG----GGAPPQVGGFPNGMQGPPNSSGPQMYPQGGAFNR-PQGQMPMMPGYN 689
MGMNPMH+G GG PP +G F QG G QMY GG+FNR P GQMPMMPG N
Sbjct: 636 MGMNPMHAGSLPTGGVPPPIGSF----QG-----GAQMYAPGGSFNRAPAGQMPMMPGLN 686
Query: 690 PFQSGN 695
P+Q+GN
Sbjct: 687 PYQTGN 692
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449445059|ref|XP_004140291.1| PREDICTED: LOW QUALITY PROTEIN: flowering time control protein FY-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 987 bits (2551), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 535/674 (79%), Positives = 575/674 (85%), Gaps = 30/674 (4%)
Query: 39 QPSASSSTLNPP-EFHHLPSNP------PYDAHGDSFAAKRMRKLTQRRAVDYTSTVVRY 91
QPSASS+TL P + HH P +P PY+AH DSFAAKRMRKLTQRRAVDYTSTVVRY
Sbjct: 39 QPSASSTTLAPDFQQHHHPRHPSGPAPPPYEAHSDSFAAKRMRKLTQRRAVDYTSTVVRY 98
Query: 92 MQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSFAAKFVHTSLNKNRCSINRVL 151
MQ+RMWQRDS+DRTVLQ+TPAAAIDMLP AY+DNPSTSFAAKFVHTS+NKNRCSINRVL
Sbjct: 99 MQLRMWQRDSKDRTVLQSTPAAAIDMLPPAAYSDNPSTSFAAKFVHTSINKNRCSINRVL 158
Query: 152 WTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIK 211
WTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHD AIRSMVWSHNDNWMVSGDDGG+IK
Sbjct: 159 WTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDQAIRSMVWSHNDNWMVSGDDGGSIK 218
Query: 212 YWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGW 271
YWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSL+GHGW
Sbjct: 219 YWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLSGHGW 278
Query: 272 DVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTAS 331
DVKSVDWHPTKSLLVSGGKD+LVKLWDAK+G+ELCSFHGHKN VLCVKWNQNGNWVLTAS
Sbjct: 279 DVKSVDWHPTKSLLVSGGKDNLVKLWDAKTGKELCSFHGHKNTVLCVKWNQNGNWVLTAS 338
Query: 332 KDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQV 391
KDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGS DGSIFHWLVGHETPQ+
Sbjct: 339 KDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSFDGSIFHWLVGHETPQI 398
Query: 392 EIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGDTARDKFNMGQNQGYGEQNA 451
EI N HDN+VWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGDTARDKF+ GY EQN
Sbjct: 399 EITNAHDNSVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGDTARDKFST----GYSEQNP 454
Query: 452 VFAGRMPGNFPLPEGPTTPGPFAPGLTRNEGTIPGVGVAMPLSIPSFDSSAQGEQKQP-- 509
+ R+ GNF +P+GPTTPGPF PGL RNEGTIPG+GVAMPLS D++A GE KQP
Sbjct: 455 AGSARVTGNFVVPDGPTTPGPFPPGLARNEGTIPGIGVAMPLS----DTAAMGEHKQPHQ 510
Query: 510 LSMPLGAPPLPPGPHPSLLTANQQQGY-QQNPPPMPPQQHQGHPQQMPHLAMPPQNMPQL 568
+S+P+GAPPLPPGPHPSLL ANQQ + Q Q QQM + M PQN+PQL
Sbjct: 511 ISLPVGAPPLPPGPHPSLLAANQQHSFQQNPQQQQQQQSQHHQTQQMAPVPMQPQNLPQL 570
Query: 569 QPPSHLPMLQHPHISRPPPQMPQLGMPSPMPGSLPT--PSSHPMSMPVPVGMQGSMNQMA 626
QPPSH P+L HP++ R PPQMP L MPS PGSLP+ P+S P+ MP P+GMQGSMNQM
Sbjct: 571 QPPSHFPLLPHPNLPR-PPQMPALNMPS-QPGSLPSSGPASGPLPMPGPMGMQGSMNQMV 628
Query: 627 PPMQQGHYMGMNPMHSG----GGAPPQVGGFPN---GMQGPPNSSGPQMYPQGGAFNRPQ 679
PPM Q HYMGMNPMHSG GAPP V GF N MQGP N+SG MYPQGG FNR Q
Sbjct: 629 PPMPQNHYMGMNPMHSGPMPTSGAPPSVQGFQNNLPNMQGPSNASGAPMYPQGGGFNRGQ 688
Query: 680 -GQMPMMPGYNPFQ 692
GQMPM PG+NP+Q
Sbjct: 689 AGQMPMTPGFNPYQ 702
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356546364|ref|XP_003541596.1| PREDICTED: flowering time control protein FY-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 955 bits (2469), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 538/682 (78%), Positives = 564/682 (82%), Gaps = 26/682 (3%)
Query: 36 MMRQPSASSSTLNPPEFHHLPSNPP----YDAHGDSFAAKRMRKLTQRRAVDYTSTVVRY 91
+MRQ SASS+ L PEFHH P YDAH D AKR+RKLTQR+AVDYTSTVVRY
Sbjct: 46 VMRQGSASSTNL-APEFHHPGPGGPPPPHYDAHSDIHGAKRIRKLTQRKAVDYTSTVVRY 104
Query: 92 MQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSFAAKFVHTSLNKNRCSINRVL 151
MQIRM QRDSRDRTVLQ T AAAIDMLP V Y DNPSTSFAAKFVHTSLNKNRC INRVL
Sbjct: 105 MQIRMSQRDSRDRTVLQPTSAAAIDMLPAVGYPDNPSTSFAAKFVHTSLNKNRCPINRVL 164
Query: 152 WTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIK 211
WTPTGRRLITGSQ+GEFTLWNGQSFNFEMILQAHD AIRSMVWSHNDNWMVSGDDGGAIK
Sbjct: 165 WTPTGRRLITGSQTGEFTLWNGQSFNFEMILQAHDQAIRSMVWSHNDNWMVSGDDGGAIK 224
Query: 212 YWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGW 271
YWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEE SLTGHGW
Sbjct: 225 YWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEECSLTGHGW 284
Query: 272 DVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTAS 331
DVKSVDWHPTKSLLVSGGKD+LVKLWDAK+GRELCSFHGHKN VLCVKWNQNGNWVLTAS
Sbjct: 285 DVKSVDWHPTKSLLVSGGKDNLVKLWDAKTGRELCSFHGHKNTVLCVKWNQNGNWVLTAS 344
Query: 332 KDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQV 391
KDQIIKLYDIRAMKELESFRGHRKDVT LAWHPFHEEYFVSGS DGSIFHWLVGHETPQ+
Sbjct: 345 KDQIIKLYDIRAMKELESFRGHRKDVTTLAWHPFHEEYFVSGSYDGSIFHWLVGHETPQI 404
Query: 392 EIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGDTARDKFNMGQNQGYGEQNA 451
EI N HDN VWDLAWHPIGYLLCSGS+DHTTKFWCRNRPGD ARD+FN G QGY EQ+
Sbjct: 405 EISNAHDNNVWDLAWHPIGYLLCSGSSDHTTKFWCRNRPGDPARDRFNTGM-QGYAEQSP 463
Query: 452 VFAGRMPGNFPLPEGPTTPGPFAPGLTRNEGTIPGVGVAMPLSIPSFDSSAQGEQKQPLS 511
V AGR GNFP+ EGPTTPGPFAPGLTRNEGTIPGVGVAMPLSIPS D QGEQKQP
Sbjct: 464 V-AGRTGGNFPIAEGPTTPGPFAPGLTRNEGTIPGVGVAMPLSIPSLD-MPQGEQKQPHP 521
Query: 512 MPLGAPPLPPGPHPSLLTANQQQGYQQNPPPMPPQQHQGHPQQMPHLAMPPQNMPQLQPP 571
+ +GAPPLPPGPHPSL+ ANQQQ YQQNP MP QHQ PQQM L MPP NM QLQ P
Sbjct: 522 VSMGAPPLPPGPHPSLINANQQQPYQQNPQQMPQHQHQALPQQMGSLPMPP-NMQQLQHP 580
Query: 572 SHLPMLQHPHISRPPPQMPQLGMPSPMPGSLPTPSSHPMSMPVPVGMQGSMNQMAPPMQQ 631
SH P P QMP +GMP +PG P+SHPM MP P+GMQG+MNQM PM Q
Sbjct: 581 SHSPFPNMPRPPP---QMP-IGMPGSIPGISSVPTSHPMPMPGPMGMQGAMNQMGSPMPQ 636
Query: 632 GHYMGMNPMHSGG-------GAPPQVGGFPNGMQGPPNSSGPQMYPQGGAFNRPQ-GQMP 683
G Y+GMN MHSG G PN MQGP N++ YPQG +FNRPQ GQMP
Sbjct: 637 GPYVGMNQMHSGSLPTSGGPPLGGFPGNLPN-MQGPSNAN----YPQGASFNRPQGGQMP 691
Query: 684 MMPGYNPFQSGNQSGMAPPPPP 705
+M GYNP+QSGNQSGM P P
Sbjct: 692 LMQGYNPYQSGNQSGMPPNAQP 713
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356556823|ref|XP_003546720.1| PREDICTED: flowering time control protein FY-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 946 bits (2445), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 537/682 (78%), Positives = 564/682 (82%), Gaps = 26/682 (3%)
Query: 36 MMRQPSASSSTLNPPEFHHLPSNPP----YDAHGDSFAAKRMRKLTQRRAVDYTSTVVRY 91
MMRQ SASS+ L PEFHH P YDAH DS AKR+RKLTQR+AVDYTSTVVRY
Sbjct: 47 MMRQGSASSTNL-APEFHHPGPGGPPPPHYDAHSDSHGAKRIRKLTQRKAVDYTSTVVRY 105
Query: 92 MQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSFAAKFVHTSLNKNRCSINRVL 151
MQIRM QRDSRDRTVLQ TPAAAIDMLP V Y DNPSTSFAAKFVHTSLNKNRC INRVL
Sbjct: 106 MQIRMSQRDSRDRTVLQPTPAAAIDMLPAVGYPDNPSTSFAAKFVHTSLNKNRCPINRVL 165
Query: 152 WTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIK 211
WTPTGRRLITGSQ+GEFTLWNGQSFNFEMILQAHD AIRSMVWSHNDNWMVSGDDGGAIK
Sbjct: 166 WTPTGRRLITGSQTGEFTLWNGQSFNFEMILQAHDQAIRSMVWSHNDNWMVSGDDGGAIK 225
Query: 212 YWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGW 271
YWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEE SL+GHGW
Sbjct: 226 YWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEECSLSGHGW 285
Query: 272 DVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTAS 331
DVKSVDWHPTKSLLVSGGKD+LVKLWDAK+GRELCSFHGHKN VLCVKWNQNGNWVLTAS
Sbjct: 286 DVKSVDWHPTKSLLVSGGKDNLVKLWDAKTGRELCSFHGHKNTVLCVKWNQNGNWVLTAS 345
Query: 332 KDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQV 391
KDQIIKLYDIRAMKELESFRGHRKDVT LAWHPFHEEYFVSGS DGSIFHWLVGHETPQ+
Sbjct: 346 KDQIIKLYDIRAMKELESFRGHRKDVTTLAWHPFHEEYFVSGSYDGSIFHWLVGHETPQI 405
Query: 392 EIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGDTARDKFNMGQNQGYGEQNA 451
EI N HDN VWDLAWHPIGYLLCSGS+DHTTKFWCRNRPGD ARD+FN G GY +QN
Sbjct: 406 EISNAHDNNVWDLAWHPIGYLLCSGSSDHTTKFWCRNRPGDPARDRFNTGM-PGYADQNP 464
Query: 452 VFAGRMPGNFPLPEGPTTPGPFAPGLTRNEGTIPGVGVAMPLSIPSFDSSAQGEQKQPLS 511
V GRM GNF + EGPTTPGPFAPGLTRNEGTIPGVGVAMPLSIPS D QGEQKQP
Sbjct: 465 V-VGRMGGNFTIAEGPTTPGPFAPGLTRNEGTIPGVGVAMPLSIPSLD-MPQGEQKQPHP 522
Query: 512 MPLGAPPLPPGPHPSLLTANQQQGYQQNPPPMPPQQHQGHPQQMPHLAMPPQNMPQLQPP 571
+ +GAPPLPPGPHPSLL ANQQQ YQQNP +P QHQ PQQM L MPP NM QLQ P
Sbjct: 523 VSMGAPPLPPGPHPSLLNANQQQPYQQNPQQIPQHQHQALPQQMGPLPMPP-NMQQLQHP 581
Query: 572 SHLPMLQHPHISRPPPQMPQLGMPSPMPGSLPTPSSHPMSMPVPVGMQGSMNQMAPPMQQ 631
SH P P QMP +GMP +PG P+SHPM MP P+GMQG+MNQM PM Q
Sbjct: 582 SHSPFPNMPRPPP---QMP-IGMPGSIPGISSVPTSHPMPMPGPMGMQGAMNQMGTPMPQ 637
Query: 632 GHYMGMNPMHSGG-------GAPPQVGGFPNGMQGPPNSSGPQMYPQGGAFNRPQ-GQMP 683
G Y+GMN MHSG G PN MQGP N++ YPQG +FNRPQ GQMP
Sbjct: 638 GPYVGMNQMHSGSLPTSGGPPLGGFPGNLPN-MQGPSNAN----YPQGASFNRPQGGQMP 692
Query: 684 MMPGYNPFQSGNQSGMAPPPPP 705
+M GY+P+QSGNQSGM P P
Sbjct: 693 LMQGYSPYQSGNQSGMPPNAQP 714
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|140068416|gb|ABO83643.1| WD40-like [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 940 bits (2429), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 524/654 (80%), Positives = 553/654 (84%), Gaps = 20/654 (3%)
Query: 61 YDAHGDSFAAKRMRKLTQRRAVDYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPT 120
YD H DS AKRMRKLTQR+AVDYTSTVVRYMQIRM QRDSRDRTVLQ TPAAAIDMLP
Sbjct: 100 YDVHNDSHGAKRMRKLTQRKAVDYTSTVVRYMQIRMSQRDSRDRTVLQPTPAAAIDMLPA 159
Query: 121 VAYTDNPSTSFAAKFVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEM 180
Y+DNPSTSFAAKFVHTSLNKNRC+IN VLWTPTGRRLITGSQ+GEFTLWNGQSFNFEM
Sbjct: 160 AGYSDNPSTSFAAKFVHTSLNKNRCAINCVLWTPTGRRLITGSQTGEFTLWNGQSFNFEM 219
Query: 181 ILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTD 240
ILQAHD AIRSM+WSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTD
Sbjct: 220 ILQAHDSAIRSMIWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTD 279
Query: 241 LKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAK 300
LKFCSCSDDTTVKVWDFARCQEE SLTGHGWDVKSVDWHPTKSLLVSGGKD+LVKLWDAK
Sbjct: 280 LKFCSCSDDTTVKVWDFARCQEECSLTGHGWDVKSVDWHPTKSLLVSGGKDNLVKLWDAK 339
Query: 301 SGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTAL 360
SG+EL SFHGHKN VLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVT L
Sbjct: 340 SGKELSSFHGHKNTVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTTL 399
Query: 361 AWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDH 420
AWHPFHEEYFVSGS DGSIFHWLVG +TPQ+EI N HDN VWDLAWHPIGYLLCSGS+DH
Sbjct: 400 AWHPFHEEYFVSGSYDGSIFHWLVGQDTPQIEISNAHDNNVWDLAWHPIGYLLCSGSSDH 459
Query: 421 TTKFWCRNRPGDTARD-KFNMGQNQGYGEQNAVFAGRMPGNFPLPEGPTTPGPFAPGL-T 478
TTKFW RNRPGD+ARD ++N G QGY EQN V AGR+PG+F +PEGPTTPGPF PGL T
Sbjct: 460 TTKFWSRNRPGDSARDSRYNNGI-QGYAEQNPV-AGRVPGHFVMPEGPTTPGPFPPGLMT 517
Query: 479 RNEGTIPGVGVAMPLSIPSFDSSAQGEQKQPLSMPLGAPPLPPGPHPSLLTANQQQGYQQ 538
RNEGTIPGVGVAMPLSIPSFD S QGEQKQP +GAPPLPPGPHPSLL NQQQ +QQ
Sbjct: 518 RNEGTIPGVGVAMPLSIPSFDGS-QGEQKQPHPGSIGAPPLPPGPHPSLLNPNQQQPFQQ 576
Query: 539 NPPPMPPQQHQGHPQQMPHLAMPPQNMPQLQPPSHLPMLQHPHISRPPPQMPQLGMPSPM 598
NP +P Q Q P L MPP NMPQ+Q SH ML H H+ RPPPQMP M
Sbjct: 577 NPQQIPQHQQQLQQHMGP-LPMPP-NMPQIQHSSHSSMLPHQHLPRPPPQMPH-----GM 629
Query: 599 PGSLPTPSSHPMSMPVPVGMQGSMNQMAPPMQQGHYMGMNPMH---SGGGAPPQVGGFPN 655
PGSLP P+SHPM +P P+GMQG+MNQM PPM QGHY GMN MH P +GGFPN
Sbjct: 630 PGSLPVPTSHPMPIPGPMGMQGTMNQMGPPMPQGHYGGMNQMHSGSLSSSGGPPMGGFPN 689
Query: 656 GMQGPPNSSGPQMYPQGGAFNRPQ-GQMPMMPGYNPFQSGNQSGMAPPPPPGPP 708
MQGPPN++ YPQG FNRPQ GQMPMM GYNP+QSGNQ GM P G P
Sbjct: 690 NMQGPPNNN----YPQGAPFNRPQGGQMPMMQGYNPYQSGNQPGMPPNSQQGGP 739
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357515041|ref|XP_003627809.1| Flowering time control protein FY [Medicago truncatula] gi|355521831|gb|AET02285.1| Flowering time control protein FY [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 920 bits (2379), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 515/653 (78%), Positives = 544/653 (83%), Gaps = 35/653 (5%)
Query: 61 YDAHGDSFAAKRMRKLTQRRAVDYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPT 120
YD H DS AKRMRKLTQR+AVDYTSTVVRYMQIRM QRDSRDRTVLQ TPAAAIDMLP
Sbjct: 100 YDVHNDSHGAKRMRKLTQRKAVDYTSTVVRYMQIRMSQRDSRDRTVLQPTPAAAIDMLPA 159
Query: 121 VAYTDNPSTSFAAKFVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEM 180
Y+DNPSTSFAAKFVHTSLNKNRC+IN VLWTPTGRRLITGSQ+GEFTLWNGQSFNFEM
Sbjct: 160 AGYSDNPSTSFAAKFVHTSLNKNRCAINCVLWTPTGRRLITGSQTGEFTLWNGQSFNFEM 219
Query: 181 ILQ---------------AHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKS 225
ILQ AHD AIRSM+WSHNDNWMVSGDDGGAIKYWQNNMNNVKANKS
Sbjct: 220 ILQLKNIRGQRWNSKYVQAHDSAIRSMIWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKS 279
Query: 226 AHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLL 285
AHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEE SLTGHGWDVKSVDWHPTKSLL
Sbjct: 280 AHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEECSLTGHGWDVKSVDWHPTKSLL 339
Query: 286 VSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMK 345
VSGGKD+LVKLWDAKSG+EL SFHGHKN VLCVKWNQNGNWVLTASKDQIIKLYDIRAMK
Sbjct: 340 VSGGKDNLVKLWDAKSGKELSSFHGHKNTVLCVKWNQNGNWVLTASKDQIIKLYDIRAMK 399
Query: 346 ELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLA 405
ELESFRGHRKDVT LAWHPFHEEYFVSGS DGSIFHWLVG +TPQ+EI N HDN VWDLA
Sbjct: 400 ELESFRGHRKDVTTLAWHPFHEEYFVSGSYDGSIFHWLVGQDTPQIEISNAHDNNVWDLA 459
Query: 406 WHPIGYLLCSGSNDHTTKFWCRNRPGDTARD-KFNMGQNQGYGEQNAVFAGRMPGNFPLP 464
WHPIGYLLCSGS+DHTTKFW RNRPGD+ARD ++N G QGY EQN V AGR+PG+F +P
Sbjct: 460 WHPIGYLLCSGSSDHTTKFWSRNRPGDSARDSRYNNGI-QGYAEQNPV-AGRVPGHFVMP 517
Query: 465 EGPTTPGPFAPGL-TRNEGTIPGVGVAMPLSIPSFDSSAQGEQKQPLSMPLGAPPLPPGP 523
EGPTTPGPF PGL TRNEGTIPGVGVAMPLSIPSFD S QGEQKQP +GAPPLPPGP
Sbjct: 518 EGPTTPGPFPPGLMTRNEGTIPGVGVAMPLSIPSFDGS-QGEQKQPHPGSIGAPPLPPGP 576
Query: 524 HPSLLTANQQQGYQQNPPPMPPQQHQGHPQQMPHLAMPPQNMPQLQPPSHLPMLQHPHIS 583
HPSLL NQQQ +QQNP +P Q Q P L MPP NMPQ+Q SH ML H H+
Sbjct: 577 HPSLLNPNQQQPFQQNPQQIPQHQQQLQQHMGP-LPMPP-NMPQIQHSSHSSMLPHQHLP 634
Query: 584 RPPPQMPQLGMPSPMPGSLPTPSSHPMSMPVPVGMQGSMNQMAPPMQQGHYMGMNPMH-- 641
RPPPQMP MPGSLP P+SHPM +P P+GMQG+MNQM PPM QGHY GMN MH
Sbjct: 635 RPPPQMPH-----GMPGSLPVPTSHPMPIPGPMGMQGTMNQMGPPMPQGHYGGMNQMHSG 689
Query: 642 -SGGGAPPQVGGFPNGMQGPPNSSGPQMYPQGGAFNRPQ-GQMPMMPGYNPFQ 692
P +GGFPN MQGPPN++ YPQG FNRPQ GQMPMM GYNP+Q
Sbjct: 690 SLSSSGGPPMGGFPNNMQGPPNNN----YPQGAPFNRPQGGQMPMMQGYNPYQ 738
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|218189742|gb|EEC72169.1| hypothetical protein OsI_05213 [Oryza sativa Indica Group] | Back alignment and taxonomy information |
|---|
Score = 860 bits (2222), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 471/694 (67%), Positives = 523/694 (75%), Gaps = 48/694 (6%)
Query: 21 HFNRGPQPPQPPGPPMMRQPSASSSTLNPPEF-------HHLPSNPPYDAHGDSFAAKRM 73
F RGP P QPP MRQ SA+SST P ++ ++PPYDA+GD+F AKRM
Sbjct: 30 EFYRGP-PTQPP----MRQLSAASSTNIPGDYAAHQGHPPPQQNHPPYDAYGDNFGAKRM 84
Query: 74 RKLTQRRAVDYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSFAA 133
RK QRR VDYTSTVVRY+Q RMWQRD+RDR +Q TPAA +DMLP+VAY DNPSTSFAA
Sbjct: 85 RKPVQRRTVDYTSTVVRYVQARMWQRDARDRPTVQPTPAAVLDMLPSVAYPDNPSTSFAA 144
Query: 134 KFVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMV 193
KFVH+S+NKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHD A+RSM+
Sbjct: 145 KFVHSSINKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDQAVRSMI 204
Query: 194 WSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVK 253
WS+N+NWMV+GDDGGAIKYWQ+NMNNVK NK+AH+ESVRDLSFCRTDLKFCSCSDDTTVK
Sbjct: 205 WSNNENWMVTGDDGGAIKYWQSNMNNVKVNKTAHRESVRDLSFCRTDLKFCSCSDDTTVK 264
Query: 254 VWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKN 313
VWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKD LVKLWDAKSGREL SFHGHKN
Sbjct: 265 VWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDYLVKLWDAKSGRELRSFHGHKN 324
Query: 314 MVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSG 373
+V CVKWNQNGNWVLTASKDQIIKLYDIR+MKELESFRGH KDVTALAWHPFHEEYFVSG
Sbjct: 325 IVQCVKWNQNGNWVLTASKDQIIKLYDIRSMKELESFRGHNKDVTALAWHPFHEEYFVSG 384
Query: 374 SLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGDT 433
S DG+IFHWLVGHETPQ+EI+N HDN+VWDLAWHP+GYLLCSG NDH T+FWCRNRPGD
Sbjct: 385 SYDGAIFHWLVGHETPQIEINNAHDNSVWDLAWHPVGYLLCSGGNDHATRFWCRNRPGDL 444
Query: 434 ARDKFNMGQNQGYGEQNAVFAGRMPGNFPLPEGPTTPGPFAPGLTRNEGTIPGVGVAMPL 493
RDK+N GQ QGYG+Q+ FAGR G F +PE TTPGPF GL+RNEGTIPG+GVAMPL
Sbjct: 445 TRDKYNSGQMQGYGDQHPAFAGRAMGGFQMPEPSTTPGPFNTGLSRNEGTIPGIGVAMPL 504
Query: 494 SIPSFDSSAQGEQKQPLSMPLGAPPLPPGPHPSLLTANQQQGYQQNPPPMPPQQHQGHPQ 553
D S GEQ+ + P P L A QQ Q Q Q
Sbjct: 505 -----DGSDHGEQRPSIPGLPPGQPPLPPGPHPSLLAGGQQ----------QQYQQMQQQ 549
Query: 554 QMPHLAMPPQNMPQLQPPSHLPMLQHPHISRPPPQMPQLGMPSPMPGSLPTPSSHPMSMP 613
PP NMPQLQPP+H ML H SR P +PQL PS P PM P
Sbjct: 550 HPQFPRPPPPNMPQLQPPAH--MLPHAQGSRAP--LPQL--PSMPGPPPVNPPLPPMPHP 603
Query: 614 VPVGMQGSMNQMAPPMQQGHYMGMNPMHSG--GGAPPQVGGFPNGM---QGPPNSSGPQM 668
+ + +QGS NQM P M Q H +GMN H G PP +GGFPNGM QG ++SG Q
Sbjct: 604 MAMQVQGSSNQMMPQMPQ-HLIGMNQTHQGPPSNMPP-MGGFPNGMGNIQGGSSASGMQN 661
Query: 669 YPQGGAFNRPQGQMP--------MMPGYNPFQSG 694
+P GG +NRPQGQMP +PG + +Q G
Sbjct: 662 FPMGGMYNRPQGQMPPQAQAQMTSIPGLSSYQPG 695
|
Source: Oryza sativa Indica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|222619877|gb|EEE56009.1| hypothetical protein OsJ_04772 [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 860 bits (2222), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 471/694 (67%), Positives = 523/694 (75%), Gaps = 48/694 (6%)
Query: 21 HFNRGPQPPQPPGPPMMRQPSASSSTLNPPEF-------HHLPSNPPYDAHGDSFAAKRM 73
F RGP PPQPP MRQ SA+SST P ++ + PPYDA+GD+F AKRM
Sbjct: 30 EFYRGP-PPQPP----MRQLSAASSTNIPGDYAAHQGHPPPQQNQPPYDAYGDNFGAKRM 84
Query: 74 RKLTQRRAVDYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSFAA 133
RK QRR VDYTSTVVRY+Q RMWQRD+RDR +Q TPAA +DMLP+VAY DNPSTSFAA
Sbjct: 85 RKPVQRRTVDYTSTVVRYVQARMWQRDARDRPTVQPTPAAVLDMLPSVAYPDNPSTSFAA 144
Query: 134 KFVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMV 193
KFVH+S+NKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHD A+RSM+
Sbjct: 145 KFVHSSINKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDQAVRSMI 204
Query: 194 WSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVK 253
WS+N+NWMV+GDDGGAIKYWQ+NMNNVK NK+AH+ESVRDLSFCRTDLKFCSCSDDTTVK
Sbjct: 205 WSNNENWMVTGDDGGAIKYWQSNMNNVKVNKTAHRESVRDLSFCRTDLKFCSCSDDTTVK 264
Query: 254 VWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKN 313
VWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKD LVKLWDAKSGREL SFHGHKN
Sbjct: 265 VWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDYLVKLWDAKSGRELRSFHGHKN 324
Query: 314 MVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSG 373
+V CVKWNQNGNWVLTASKDQIIKLYDIR+MKELESFRGH KDVTALAWHPFHEEYFVSG
Sbjct: 325 IVQCVKWNQNGNWVLTASKDQIIKLYDIRSMKELESFRGHNKDVTALAWHPFHEEYFVSG 384
Query: 374 SLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGDT 433
S DG+IFHWLVGHETPQ+EI+N HDN+VWDLAWHP+GYLLCSG NDH T+FWCRNRPGD
Sbjct: 385 SYDGAIFHWLVGHETPQIEINNAHDNSVWDLAWHPVGYLLCSGGNDHATRFWCRNRPGDL 444
Query: 434 ARDKFNMGQNQGYGEQNAVFAGRMPGNFPLPEGPTTPGPFAPGLTRNEGTIPGVGVAMPL 493
RDK+N GQ QGYG+Q+ FAGR G F +PE TTPGPF GL+RNEGTIPG+GVAMPL
Sbjct: 445 TRDKYNSGQMQGYGDQHPAFAGRAMGGFQMPEPSTTPGPFNTGLSRNEGTIPGIGVAMPL 504
Query: 494 SIPSFDSSAQGEQKQPLSMPLGAPPLPPGPHPSLLTANQQQGYQQNPPPMPPQQHQGHPQ 553
D S GEQ+ + P P L A QQ Q Q Q
Sbjct: 505 -----DGSDHGEQRPSIPGLPPGQPPLPPGPHPSLLAGGQQ----------QQYQQMQQQ 549
Query: 554 QMPHLAMPPQNMPQLQPPSHLPMLQHPHISRPPPQMPQLGMPSPMPGSLPTPSSHPMSMP 613
PP NMPQLQPP+H ML H SR P +PQL PS P PM P
Sbjct: 550 HPQFPRPPPPNMPQLQPPAH--MLPHAQGSRAP--LPQL--PSMSGPPPVNPPLPPMPHP 603
Query: 614 VPVGMQGSMNQMAPPMQQGHYMGMNPMHSG--GGAPPQVGGFPNGM---QGPPNSSGPQM 668
+ + +QGS NQM P M Q H +GMN H G PP +GGFPNGM QG ++SG Q
Sbjct: 604 MAMQVQGSSNQMMPQMPQ-HLIGMNQTHQGPPSNMPP-MGGFPNGMGNIQGGSSASGMQN 661
Query: 669 YPQGGAFNRPQGQMP--------MMPGYNPFQSG 694
+P GG +NRPQG+MP +PG + +Q G
Sbjct: 662 FPMGGMYNRPQGKMPPQAQAQMTSIPGLSSYQPG 695
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 715 | ||||||
| UNIPROTKB|Q5JKX0 | 527 | B1147A04.35 "cDNA clone:J01300 | 0.451 | 0.612 | 0.832 | 2.1e-178 | |
| DICTYBASE|DDB_G0295793 | 657 | DDB_G0295793 "WD40 repeat-cont | 0.632 | 0.687 | 0.527 | 7.2e-139 | |
| UNIPROTKB|E1BCT7 | 1336 | WDR33 "Uncharacterized protein | 0.563 | 0.301 | 0.530 | 1.2e-134 | |
| UNIPROTKB|F1PV59 | 1336 | WDR33 "Uncharacterized protein | 0.563 | 0.301 | 0.530 | 2e-134 | |
| UNIPROTKB|Q9C0J8 | 1336 | WDR33 "pre-mRNA 3' end process | 0.563 | 0.301 | 0.530 | 2e-134 | |
| MGI|MGI:1921570 | 1330 | Wdr33 "WD repeat domain 33" [M | 0.563 | 0.303 | 0.530 | 5.2e-134 | |
| UNIPROTKB|E1BT84 | 1323 | WDR33 "Uncharacterized protein | 0.602 | 0.325 | 0.504 | 6.7e-134 | |
| UNIPROTKB|I3LTD5 | 1471 | WDR33 "Uncharacterized protein | 0.563 | 0.273 | 0.529 | 1.8e-133 | |
| UNIPROTKB|F1LT09 | 1327 | Wdr33 "Protein Wdr33" [Rattus | 0.563 | 0.303 | 0.530 | 7.6e-133 | |
| FB|FBgn0046222 | 807 | CG1109 [Drosophila melanogaste | 0.594 | 0.526 | 0.517 | 3.9e-124 |
| UNIPROTKB|Q5JKX0 B1147A04.35 "cDNA clone:J013000B23, full insert sequence" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1552 (551.4 bits), Expect = 2.1e-178, Sum P(2) = 2.1e-178
Identities = 273/328 (83%), Positives = 296/328 (90%)
Query: 180 MILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRT 239
MILQAHD A+RSM+WS+N+NWMV+GDDGGAIKYWQ+NMNNVK NK+AH+ESVRDLSFCRT
Sbjct: 1 MILQAHDQAVRSMIWSNNENWMVTGDDGGAIKYWQSNMNNVKVNKTAHRESVRDLSFCRT 60
Query: 240 DLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDA 299
DLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKD LVKLWDA
Sbjct: 61 DLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDYLVKLWDA 120
Query: 300 KSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTA 359
KSGREL SFHGHKN+V CVKWNQNGNWVLTASKDQIIKLYDIR+MKELESFRGH KDVTA
Sbjct: 121 KSGRELRSFHGHKNIVQCVKWNQNGNWVLTASKDQIIKLYDIRSMKELESFRGHNKDVTA 180
Query: 360 LAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSND 419
LAWHPFHEEYFVSGS DG+IFHWLVGHETPQ+EI+N HDN+VWDLAWHP+GYLLCSG ND
Sbjct: 181 LAWHPFHEEYFVSGSYDGAIFHWLVGHETPQIEINNAHDNSVWDLAWHPVGYLLCSGGND 240
Query: 420 HTTKFWCRNRPGDTARDKFNMGQNQGYGEQNAVFAGRMPGNFPLPEGPTTPGPFAPGLTR 479
H T+FWCRNRPGD RDK+N GQ QGYG+Q+ FAGR G F +PE TTPGPF GL+R
Sbjct: 241 HATRFWCRNRPGDLTRDKYNSGQMQGYGDQHPAFAGRAMGGFQMPEPSTTPGPFNTGLSR 300
Query: 480 NEGTIPGVGVAMPLSIPSFDSSAQGEQK 507
NEGTIPG+GVAMPL D S GEQ+
Sbjct: 301 NEGTIPGIGVAMPL-----DGSDHGEQR 323
|
|
| DICTYBASE|DDB_G0295793 DDB_G0295793 "WD40 repeat-containing protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 1315 (468.0 bits), Expect = 7.2e-139, Sum P(2) = 7.2e-139
Identities = 243/461 (52%), Positives = 317/461 (68%)
Query: 52 FHHLPSNPPYDAHGDSFAAKRMRKLTQRRAVDYTSTVVRYMQIRMWQRDSRDRTVLQATP 111
+ H SN Y A + KRMRK R+ VD+ ST+++Y R++QRD RD V+Q
Sbjct: 35 YSHQYSN--YHAAKIVYDGKRMRKAVVRKTVDFNSTLIKYNLARVYQRDYRDFAVVQPDQ 92
Query: 112 AAAIDMLPTVAYTDNPSTSFAAKFVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLW 171
++LP +A NP TS ++F+HTS NK + IN V WTP GRRL+TGS SGEFTLW
Sbjct: 93 LYIREILPPIALESNPITSVCSRFIHTSSNKVKYPINCVSWTPEGRRLVTGSSSGEFTLW 152
Query: 172 NGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKES- 230
NG +FNFE ILQAHD A+RS++WSHN++WMVSGDD G IKYWQ NMNNVK K AH++S
Sbjct: 153 NGLTFNFETILQAHDSAVRSIIWSHNEDWMVSGDDSGNIKYWQPNMNNVKIFK-AHEQSK 211
Query: 231 VRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGK 290
+R LSF TDLK SC+DD +K+WDFARC E+ L GHGWDVK V WHP KSL+VSGGK
Sbjct: 212 IRGLSFSPTDLKLASCADDKIIKIWDFARCTEDNQLVGHGWDVKCVSWHPQKSLIVSGGK 271
Query: 291 DSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESF 350
D+ +K+WDAKS + + + HGHK+ V V+WNQNGNW+++AS DQ++K++DIR MKE+++F
Sbjct: 272 DNNIKIWDAKSSQNITTLHGHKSTVSKVEWNQNGNWIVSASSDQLLKVFDIRTMKEMQTF 331
Query: 351 RGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIG 410
+GH K+VTALA HP+HE+ FVSG DG I +W+VG+ PQ EIH+ HD VW L+WHPIG
Sbjct: 332 KGHGKEVTALALHPYHEDLFVSGDKDGKILYWIVGNPEPQAEIHSAHDADVWSLSWHPIG 391
Query: 411 YLLCSGSNDHTTKFWCRNRPGDTARDKFNMGQNQGYGEQNAVFAGRMPGNFPLPEGPTTP 470
++L SGSNDHTTKFW RNRP DT +DK+N N +N A + LP G + P
Sbjct: 392 HILASGSNDHTTKFWSRNRPADTMKDKYN-NPNASKDIENEEDADDQESDLSLP-GLSLP 449
Query: 471 G--PFAPG-LTRNEGTIPGVGVAMPLSIPSFDSSAQGEQKQ 508
G + P ++ + + +M P Q +Q+Q
Sbjct: 450 GLGSYKPSPQLSSQNILQNLNYSMQQQQPQQQPQQQQQQQQ 490
|
|
| UNIPROTKB|E1BCT7 WDR33 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 1218 (433.8 bits), Expect = 1.2e-134, Sum P(2) = 1.2e-134
Identities = 216/407 (53%), Positives = 278/407 (68%)
Query: 67 SFAAKRMRKLTQRRAVDYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDN 126
+F KRMRK R+ +DY +V++Y++ R+WQRD RD +Q D++P + +N
Sbjct: 42 TFDGKRMRKAVNRKTIDYNPSVIKYLENRIWQRDQRDMRAIQPDAGYYNDLVPPIGMLNN 101
Query: 127 PSTSFAAKFVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHD 186
P + KFV TS NK +C + V WTP GRRL+TG+ SGEFTLWNG +FNFE ILQAHD
Sbjct: 102 PMNAVTTKFVRTSTNKVKCPVFVVRWTPEGRRLVTGASSGEFTLWNGLTFNFETILQAHD 161
Query: 187 HAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSC 246
+R+M WSHND WM++ D GG +KYWQ+NMNNVK + AHKE++R+ SF TD KF +C
Sbjct: 162 SPVRAMTWSHNDMWMLTADHGGYVKYWQSNMNNVKMFQ-AHKEAIREASFSPTDNKFATC 220
Query: 247 SDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSL--VKLWDAKSGRE 304
SDD TV++WDF RC EER L GHG DVK VDWHPTK L+VSG KDS +K WD K+G+
Sbjct: 221 SDDGTVRIWDFLRCHEERILRGHGADVKCVDWHPTKGLVVSGSKDSQQPIKFWDPKTGQS 280
Query: 305 LCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKE-LESFRGHRKDVTALAWH 363
L + H HKN V+ VK N NGNW+LTAS+D + KL+DIR +KE L+ FRGH+K+ TA+AWH
Sbjct: 281 LATLHAHKNTVMEVKLNLNGNWLLTASRDHLCKLFDIRNLKEELQVFRGHKKEATAVAWH 340
Query: 364 PFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTK 423
P HE F SG DGS+ W VG E + H+ +W LAWHP+G++LCSGSNDHT+K
Sbjct: 341 PVHEGLFASGGSDGSLLFWHVGVEKEVGGMEMAHEGMIWSLAWHPLGHILCSGSNDHTSK 400
Query: 424 FWCRNRPGDTARDKFNMGQNQGYGEQNAVFAGRMPGNFPLPEGPTTP 470
FW RNRPGD RD++N+ G E + P + + G P
Sbjct: 401 FWTRNRPGDKMRDRYNLNLLPGMSEDGVEYDDLEPNSLAVIPGMGIP 447
|
|
| UNIPROTKB|F1PV59 WDR33 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 1218 (433.8 bits), Expect = 2.0e-134, Sum P(2) = 2.0e-134
Identities = 216/407 (53%), Positives = 278/407 (68%)
Query: 67 SFAAKRMRKLTQRRAVDYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDN 126
+F KRMRK R+ +DY +V++Y++ R+WQRD RD +Q D++P + +N
Sbjct: 42 TFDGKRMRKAVNRKTIDYNPSVIKYLENRIWQRDQRDMRAIQPDAGYYNDLVPPIGMLNN 101
Query: 127 PSTSFAAKFVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHD 186
P + KFV TS NK +C + V WTP GRRL+TG+ SGEFTLWNG +FNFE ILQAHD
Sbjct: 102 PMNAVTTKFVRTSTNKVKCPVFVVRWTPEGRRLVTGASSGEFTLWNGLTFNFETILQAHD 161
Query: 187 HAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSC 246
+R+M WSHND WM++ D GG +KYWQ+NMNNVK + AHKE++R+ SF TD KF +C
Sbjct: 162 SPVRAMTWSHNDMWMLTADHGGYVKYWQSNMNNVKMFQ-AHKEAIREASFSPTDNKFATC 220
Query: 247 SDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSL--VKLWDAKSGRE 304
SDD TV++WDF RC EER L GHG DVK VDWHPTK L+VSG KDS +K WD K+G+
Sbjct: 221 SDDGTVRIWDFLRCHEERILRGHGADVKCVDWHPTKGLVVSGSKDSQQPIKFWDPKTGQS 280
Query: 305 LCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKE-LESFRGHRKDVTALAWH 363
L + H HKN V+ VK N NGNW+LTAS+D + KL+DIR +KE L+ FRGH+K+ TA+AWH
Sbjct: 281 LATLHAHKNTVMEVKLNLNGNWLLTASRDHLCKLFDIRNLKEELQVFRGHKKEATAVAWH 340
Query: 364 PFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTK 423
P HE F SG DGS+ W VG E + H+ +W LAWHP+G++LCSGSNDHT+K
Sbjct: 341 PVHEGLFASGGSDGSLLFWHVGVEKEVGGMEMAHEGMIWSLAWHPLGHILCSGSNDHTSK 400
Query: 424 FWCRNRPGDTARDKFNMGQNQGYGEQNAVFAGRMPGNFPLPEGPTTP 470
FW RNRPGD RD++N+ G E + P + + G P
Sbjct: 401 FWTRNRPGDKMRDRYNLNLLPGMSEDGVEYDDLEPNSLAVIPGMGIP 447
|
|
| UNIPROTKB|Q9C0J8 WDR33 "pre-mRNA 3' end processing protein WDR33" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 1218 (433.8 bits), Expect = 2.0e-134, Sum P(2) = 2.0e-134
Identities = 216/407 (53%), Positives = 278/407 (68%)
Query: 67 SFAAKRMRKLTQRRAVDYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDN 126
+F KRMRK R+ +DY +V++Y++ R+WQRD RD +Q D++P + +N
Sbjct: 42 TFDGKRMRKAVNRKTIDYNPSVIKYLENRIWQRDQRDMRAIQPDAGYYNDLVPPIGMLNN 101
Query: 127 PSTSFAAKFVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHD 186
P + KFV TS NK +C + V WTP GRRL+TG+ SGEFTLWNG +FNFE ILQAHD
Sbjct: 102 PMNAVTTKFVRTSTNKVKCPVFVVRWTPEGRRLVTGASSGEFTLWNGLTFNFETILQAHD 161
Query: 187 HAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSC 246
+R+M WSHND WM++ D GG +KYWQ+NMNNVK + AHKE++R+ SF TD KF +C
Sbjct: 162 SPVRAMTWSHNDMWMLTADHGGYVKYWQSNMNNVKMFQ-AHKEAIREASFSPTDNKFATC 220
Query: 247 SDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSL--VKLWDAKSGRE 304
SDD TV++WDF RC EER L GHG DVK VDWHPTK L+VSG KDS +K WD K+G+
Sbjct: 221 SDDGTVRIWDFLRCHEERILRGHGADVKCVDWHPTKGLVVSGSKDSQQPIKFWDPKTGQS 280
Query: 305 LCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKE-LESFRGHRKDVTALAWH 363
L + H HKN V+ VK N NGNW+LTAS+D + KL+DIR +KE L+ FRGH+K+ TA+AWH
Sbjct: 281 LATLHAHKNTVMEVKLNLNGNWLLTASRDHLCKLFDIRNLKEELQVFRGHKKEATAVAWH 340
Query: 364 PFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTK 423
P HE F SG DGS+ W VG E + H+ +W LAWHP+G++LCSGSNDHT+K
Sbjct: 341 PVHEGLFASGGSDGSLLFWHVGVEKEVGGMEMAHEGMIWSLAWHPLGHILCSGSNDHTSK 400
Query: 424 FWCRNRPGDTARDKFNMGQNQGYGEQNAVFAGRMPGNFPLPEGPTTP 470
FW RNRPGD RD++N+ G E + P + + G P
Sbjct: 401 FWTRNRPGDKMRDRYNLNLLPGMSEDGVEYDDLEPNSLAVIPGMGIP 447
|
|
| MGI|MGI:1921570 Wdr33 "WD repeat domain 33" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 1218 (433.8 bits), Expect = 5.2e-134, Sum P(2) = 5.2e-134
Identities = 216/407 (53%), Positives = 278/407 (68%)
Query: 67 SFAAKRMRKLTQRRAVDYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDN 126
+F KRMRK R+ +DY +V++Y++ R+WQRD RD +Q D++P + +N
Sbjct: 42 TFDGKRMRKAVNRKTIDYNPSVIKYLENRIWQRDQRDMRAIQPDAGYYNDLVPPIGMLNN 101
Query: 127 PSTSFAAKFVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHD 186
P + KFV TS NK +C + V WTP GRRL+TG+ SGEFTLWNG +FNFE ILQAHD
Sbjct: 102 PMNAVTTKFVRTSTNKVKCPVFVVRWTPEGRRLVTGASSGEFTLWNGLTFNFETILQAHD 161
Query: 187 HAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSC 246
+R+M WSHND WM++ D GG +KYWQ+NMNNVK + AHKE++R+ SF TD KF +C
Sbjct: 162 SPVRAMTWSHNDMWMLTADHGGYVKYWQSNMNNVKMFQ-AHKEAIREASFSPTDNKFATC 220
Query: 247 SDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSL--VKLWDAKSGRE 304
SDD TV++WDF RC EER L GHG DVK VDWHPTK L+VSG KDS +K WD K+G+
Sbjct: 221 SDDGTVRIWDFLRCHEERILRGHGADVKCVDWHPTKGLVVSGSKDSQQPIKFWDPKTGQS 280
Query: 305 LCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKE-LESFRGHRKDVTALAWH 363
L + H HKN V+ VK N NGNW+LTAS+D + KL+DIR +KE L+ FRGH+K+ TA+AWH
Sbjct: 281 LATLHAHKNTVMEVKLNLNGNWLLTASRDHLCKLFDIRNLKEELQVFRGHKKEATAVAWH 340
Query: 364 PFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTK 423
P HE F SG DGS+ W VG E + H+ +W LAWHP+G++LCSGSNDHT+K
Sbjct: 341 PVHEGLFASGGSDGSLLFWHVGVEKEVGGMEMAHEGMIWSLAWHPLGHILCSGSNDHTSK 400
Query: 424 FWCRNRPGDTARDKFNMGQNQGYGEQNAVFAGRMPGNFPLPEGPTTP 470
FW RNRPGD RD++N+ G E + P + + G P
Sbjct: 401 FWTRNRPGDKMRDRYNLNLLPGMSEDGVEYDDLEPNSLAVIPGMGIP 447
|
|
| UNIPROTKB|E1BT84 WDR33 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 1219 (434.2 bits), Expect = 6.7e-134, Sum P(2) = 6.7e-134
Identities = 221/438 (50%), Positives = 290/438 (66%)
Query: 67 SFAAKRMRKLTQRRAVDYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDN 126
+F KRMRK R+ +DY +V++Y++ R+WQRD RD +Q D++P + +N
Sbjct: 42 TFDGKRMRKAVNRKTIDYNPSVIKYLENRVWQRDQRDMRAIQPDAGYYNDLVPPIGMLNN 101
Query: 127 PSTSFAAKFVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHD 186
P + KFV TS NK +C + V WTP GRRL+TG+ SGEFTLWNG +FNFE ILQAHD
Sbjct: 102 PMNAVTTKFVRTSTNKVKCPVFVVRWTPEGRRLVTGASSGEFTLWNGLTFNFETILQAHD 161
Query: 187 HAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSC 246
+R+M WSHND WM++ D GG +KYWQ+NMNNVK + AHKE++R+ SF TD KF +C
Sbjct: 162 SPVRAMTWSHNDMWMLTADHGGYVKYWQSNMNNVKMFQ-AHKEAIREASFSPTDNKFATC 220
Query: 247 SDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSL--VKLWDAKSGRE 304
SDD TV++WDF RC EER L GHG DVK VDWHPTK L+VSG KDS +K WD K+G+
Sbjct: 221 SDDGTVRIWDFLRCHEERILRGHGADVKCVDWHPTKGLVVSGSKDSQQPIKFWDPKTGQS 280
Query: 305 LCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKE-LESFRGHRKDVTALAWH 363
L + H HKN V+ VK N NGNW+LTAS+D + KL+DIR +KE L+ FRGH+K+ TA+AWH
Sbjct: 281 LATLHAHKNTVMEVKLNLNGNWLLTASRDHLCKLFDIRNLKEELQVFRGHKKEATAVAWH 340
Query: 364 PFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTK 423
P HE F SG DGS+ W VG E + H+ +W LAWHP+G++LCSGSNDHT+K
Sbjct: 341 PVHEGLFASGGSDGSLLFWHVGVEKEVGGMEMAHEGMIWSLAWHPLGHILCSGSNDHTSK 400
Query: 424 FWCRNRPGDTARDKFNMGQNQGYGEQNAVFAGRMPGNFPLPEGPTTPGPFAPGLTRNEGT 483
FW RNRPGD RD++N+ G E + P + + G P + + E
Sbjct: 401 FWTRNRPGDKMRDRYNLNLLPGMSEDGVEYDDLEPNSLAVIPGMGIPEQLKIAMEQ-EQM 459
Query: 484 IPGVGVA--MPLSIPSFD 499
+ G + + ++IP D
Sbjct: 460 VKGKDESNDIEMTIPGLD 477
|
|
| UNIPROTKB|I3LTD5 WDR33 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 1209 (430.6 bits), Expect = 1.8e-133, Sum P(2) = 1.8e-133
Identities = 216/408 (52%), Positives = 278/408 (68%)
Query: 67 SFAAKRMRKLTQRRAVDYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDN 126
+F KRMRK R+ +DY +V++Y++ R+WQRD RD +Q D++P + +N
Sbjct: 42 TFDGKRMRKAVNRKTIDYNPSVIKYLENRIWQRDQRDMRAIQPDAGYYNDLVPPIGMLNN 101
Query: 127 PSTSFAAKFVHTSLNKNRCSINRV-LWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAH 185
P + KFV TS NK +C + V WTP GRRL+TG+ SGEFTLWNG +FNFE ILQAH
Sbjct: 102 PMNAVTTKFVRTSTNKVKCPVFVVGWWTPEGRRLVTGASSGEFTLWNGLTFNFETILQAH 161
Query: 186 DHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCS 245
D +R+M WSHND WM++ D GG +KYWQ+NMNNVK + AHKE++R+ SF TD KF +
Sbjct: 162 DSPVRAMTWSHNDMWMLTADHGGYVKYWQSNMNNVKMFQ-AHKEAIREASFSPTDNKFAT 220
Query: 246 CSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSL--VKLWDAKSGR 303
CSDD TV++WDF RC EER L GHG DVK VDWHPTK L+VSG KDS +K WD K+G+
Sbjct: 221 CSDDGTVRIWDFLRCHEERILRGHGADVKCVDWHPTKGLVVSGSKDSQQPIKFWDPKTGQ 280
Query: 304 ELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKE-LESFRGHRKDVTALAW 362
L + H HKN V+ VK N NGNW+LTAS+D + KL+DIR +KE L+ FRGH+K+ TA+AW
Sbjct: 281 SLATLHAHKNTVMEVKLNLNGNWLLTASRDHLCKLFDIRNLKEELQVFRGHKKEATAVAW 340
Query: 363 HPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTT 422
HP HE F SG DGS+ W VG E + H+ +W LAWHP+G++LCSGSNDHT+
Sbjct: 341 HPVHEGLFASGGSDGSLLFWHVGVEKEVGGMEMAHEGMIWSLAWHPLGHILCSGSNDHTS 400
Query: 423 KFWCRNRPGDTARDKFNMGQNQGYGEQNAVFAGRMPGNFPLPEGPTTP 470
KFW RNRPGD RD++N+ G E + P + + G P
Sbjct: 401 KFWTRNRPGDKMRDRYNLNLLPGMSEDGVEYDDLEPNSLAVIPGMGIP 448
|
|
| UNIPROTKB|F1LT09 Wdr33 "Protein Wdr33" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 1218 (433.8 bits), Expect = 7.6e-133, Sum P(2) = 7.6e-133
Identities = 216/407 (53%), Positives = 278/407 (68%)
Query: 67 SFAAKRMRKLTQRRAVDYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDN 126
+F KRMRK R+ +DY +V++Y++ R+WQRD RD +Q D++P + +N
Sbjct: 38 TFDGKRMRKAVNRKTIDYNPSVIKYLENRIWQRDQRDMRAIQPDAGYYNDLVPPIGMLNN 97
Query: 127 PSTSFAAKFVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHD 186
P + KFV TS NK +C + V WTP GRRL+TG+ SGEFTLWNG +FNFE ILQAHD
Sbjct: 98 PMNAVTTKFVRTSTNKVKCPVFVVRWTPEGRRLVTGASSGEFTLWNGLTFNFETILQAHD 157
Query: 187 HAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSC 246
+R+M WSHND WM++ D GG +KYWQ+NMNNVK + AHKE++R+ SF TD KF +C
Sbjct: 158 SPVRAMTWSHNDMWMLTADHGGYVKYWQSNMNNVKMFQ-AHKEAIREASFSPTDNKFATC 216
Query: 247 SDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSL--VKLWDAKSGRE 304
SDD TV++WDF RC EER L GHG DVK VDWHPTK L+VSG KDS +K WD K+G+
Sbjct: 217 SDDGTVRIWDFLRCHEERILRGHGADVKCVDWHPTKGLVVSGSKDSQQPIKFWDPKTGQS 276
Query: 305 LCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKE-LESFRGHRKDVTALAWH 363
L + H HKN V+ VK N NGNW+LTAS+D + KL+DIR +KE L+ FRGH+K+ TA+AWH
Sbjct: 277 LATLHAHKNTVMEVKLNLNGNWLLTASRDHLCKLFDIRNLKEELQVFRGHKKEATAVAWH 336
Query: 364 PFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTK 423
P HE F SG DGS+ W VG E + H+ +W LAWHP+G++LCSGSNDHT+K
Sbjct: 337 PVHEGLFASGGSDGSLLFWHVGVEKEVGGMEMAHEGMIWSLAWHPLGHILCSGSNDHTSK 396
Query: 424 FWCRNRPGDTARDKFNMGQNQGYGEQNAVFAGRMPGNFPLPEGPTTP 470
FW RNRPGD RD++N+ G E + P + + G P
Sbjct: 397 FWTRNRPGDKMRDRYNLNLLPGMSEDGVEYDDLEPNSLAVIPGMGIP 443
|
|
| FB|FBgn0046222 CG1109 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 1220 (434.5 bits), Expect = 3.9e-124, P = 3.9e-124
Identities = 223/431 (51%), Positives = 293/431 (67%)
Query: 60 PYDAHGDSFAAKRMRKLTQRRAVDYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLP 119
P+ D F KR+RK R+ VDY +++++ ++ R++QRD RDR LQ MLP
Sbjct: 62 PFGMSQDDFDGKRLRKSVMRKTVDYNASIIKALENRLYQRDYRDRLALQPDSIYVPHMLP 121
Query: 120 TVAYTDNPSTSFAAKFVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFE 179
AY DNPS + +FV T+ NK RC I + WTP GRRL+TG+ SGEFTLWNG +FNFE
Sbjct: 122 PSAYLDNPSNAVTTRFVKTATNKMRCPIFTLAWTPEGRRLVTGASSGEFTLWNGLTFNFE 181
Query: 180 MILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRT 239
ILQAHD ++R+MVWSHND+WMV+GD GG +KYWQ+NMNNVK + AHKE++R +SF T
Sbjct: 182 TILQAHDISVRTMVWSHNDSWMVTGDHGGYVKYWQSNMNNVKMYQ-AHKEAIRGISFSPT 240
Query: 240 DLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSL--VKLW 297
D KF S SDD T+++WDF RCQEER L GHG DVK V WHP K ++VSG KD+ +K+W
Sbjct: 241 DSKFVSGSDDGTLRIWDFMRCQEERVLRGHGADVKCVHWHPQKGMIVSGSKDNQQPIKIW 300
Query: 298 DAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKE-LESFRGHRKD 356
D KSG L + H HK+ V+ +KWN NGNW++TAS+D ++KL+DIR ++E ++ FRGH+K+
Sbjct: 301 DPKSGIALATLHAHKSTVMDLKWNDNGNWLVTASRDHLLKLFDIRNLREEVQVFRGHKKE 360
Query: 357 VTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSG 416
++++WHP HE F SG DGSI W VG + + HD+ VW LAWHP+G++LCSG
Sbjct: 361 ASSVSWHPIHEGLFCSGGSDGSILFWNVGTDKEIGCVETAHDSIVWTLAWHPLGHILCSG 420
Query: 417 SNDHTTKFWCRNRPGDTARDKFNMGQNQGYGEQNAVFAGRMPGNFPLPEGPTTPGPFAPG 476
SNDHT KFW RNRPGD RDK+N+ N A+ GP F
Sbjct: 421 SNDHTIKFWTRNRPGDLMRDKYNL--NTLPASLAALDECEYDDAIIPGMGPEDRVEFTES 478
Query: 477 LTRNEGTIPGV 487
LT ++G IPG+
Sbjct: 479 LTADKGFIPGL 489
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q6NLV4 | FY_ARATH | No assigned EC number | 0.6867 | 0.8559 | 0.9459 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 715 | |||
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 5e-68 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 1e-61 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 4e-46 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 1e-44 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 1e-43 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 2e-41 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 2e-36 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 8e-34 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 2e-31 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 7e-21 | |
| pfam09770 | 804 | pfam09770, PAT1, Topoisomerase II-associated prote | 3e-15 | |
| pfam09770 | 804 | pfam09770, PAT1, Topoisomerase II-associated prote | 2e-14 | |
| pfam09770 | 804 | pfam09770, PAT1, Topoisomerase II-associated prote | 4e-10 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 6e-09 | |
| pfam09770 | 804 | pfam09770, PAT1, Topoisomerase II-associated prote | 7e-09 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 7e-09 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 2e-08 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 6e-08 | |
| PHA03247 | 3151 | PHA03247, PHA03247, large tegument protein UL36; P | 1e-07 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 3e-07 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 4e-07 | |
| PTZ00420 | 568 | PTZ00420, PTZ00420, coronin; Provisional | 4e-07 | |
| pfam09606 | 768 | pfam09606, Med15, ARC105 or Med15 subunit of Media | 6e-07 | |
| PHA03247 | 3151 | PHA03247, PHA03247, large tegument protein UL36; P | 7e-07 | |
| pfam09606 | 768 | pfam09606, Med15, ARC105 or Med15 subunit of Media | 8e-07 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 2e-06 | |
| PHA03247 | 3151 | PHA03247, PHA03247, large tegument protein UL36; P | 2e-06 | |
| PTZ00421 | 493 | PTZ00421, PTZ00421, coronin; Provisional | 2e-06 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 3e-06 | |
| PLN00181 | 793 | PLN00181, PLN00181, protein SPA1-RELATED; Provisio | 3e-06 | |
| pfam09770 | 804 | pfam09770, PAT1, Topoisomerase II-associated prote | 6e-06 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 8e-06 | |
| TIGR01628 | 562 | TIGR01628, PABP-1234, polyadenylate binding protei | 9e-06 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 1e-05 | |
| pfam03154 | 979 | pfam03154, Atrophin-1, Atrophin-1 family | 1e-05 | |
| pfam03153 | 332 | pfam03153, TFIIA, Transcription factor IIA, alpha/ | 1e-05 | |
| PHA03247 | 3151 | PHA03247, PHA03247, large tegument protein UL36; P | 2e-05 | |
| pfam09606 | 768 | pfam09606, Med15, ARC105 or Med15 subunit of Media | 2e-05 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 3e-05 | |
| pfam09606 | 768 | pfam09606, Med15, ARC105 or Med15 subunit of Media | 3e-05 | |
| TIGR01628 | 562 | TIGR01628, PABP-1234, polyadenylate binding protei | 3e-05 | |
| PRK14086 | 617 | PRK14086, dnaA, chromosomal replication initiation | 3e-05 | |
| pfam07223 | 357 | pfam07223, DUF1421, Protein of unknown function (D | 4e-05 | |
| pfam03153 | 332 | pfam03153, TFIIA, Transcription factor IIA, alpha/ | 1e-04 | |
| PHA03247 | 3151 | PHA03247, PHA03247, large tegument protein UL36; P | 2e-04 | |
| pfam09606 | 768 | pfam09606, Med15, ARC105 or Med15 subunit of Media | 2e-04 | |
| PHA03307 | 1352 | PHA03307, PHA03307, transcriptional regulator ICP4 | 2e-04 | |
| pfam03153 | 332 | pfam03153, TFIIA, Transcription factor IIA, alpha/ | 3e-04 | |
| PTZ00421 | 493 | PTZ00421, PTZ00421, coronin; Provisional | 4e-04 | |
| PRK10263 | 1355 | PRK10263, PRK10263, DNA translocase FtsK; Provisio | 4e-04 | |
| pfam07271 | 279 | pfam07271, Cytadhesin_P30, Cytadhesin P30/P32 | 4e-04 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 5e-04 | |
| PRK14971 | 614 | PRK14971, PRK14971, DNA polymerase III subunits ga | 7e-04 | |
| pfam07223 | 357 | pfam07223, DUF1421, Protein of unknown function (D | 9e-04 | |
| pfam09770 | 804 | pfam09770, PAT1, Topoisomerase II-associated prote | 0.001 | |
| pfam03153 | 332 | pfam03153, TFIIA, Transcription factor IIA, alpha/ | 0.001 | |
| pfam03153 | 332 | pfam03153, TFIIA, Transcription factor IIA, alpha/ | 0.001 | |
| PRK10263 | 1355 | PRK10263, PRK10263, DNA translocase FtsK; Provisio | 0.001 | |
| PHA03378 | 991 | PHA03378, PHA03378, EBNA-3B; Provisional | 0.001 | |
| pfam04652 | 315 | pfam04652, DUF605, Vta1 like | 0.001 | |
| PHA03247 | 3151 | PHA03247, PHA03247, large tegument protein UL36; P | 0.002 | |
| PTZ00420 | 568 | PTZ00420, PTZ00420, coronin; Provisional | 0.002 | |
| pfam03154 | 979 | pfam03154, Atrophin-1, Atrophin-1 family | 0.002 | |
| PHA03378 | 991 | PHA03378, PHA03378, EBNA-3B; Provisional | 0.002 | |
| TIGR01628 | 562 | TIGR01628, PABP-1234, polyadenylate binding protei | 0.003 | |
| PRK10263 | 1355 | PRK10263, PRK10263, DNA translocase FtsK; Provisio | 0.003 | |
| cd06309 | 273 | cd06309, PBP1_YtfQ_like, Periplasmic binding domai | 0.003 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 224 bits (574), Expect = 5e-68
Identities = 84/282 (29%), Positives = 132/282 (46%), Gaps = 2/282 (0%)
Query: 144 RCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVS 203
+ V ++P G+ L TGS G +W+ ++ L+ H +R + S + ++ S
Sbjct: 9 TGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLAS 68
Query: 204 GDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEE 263
G I+ W + H V ++F S S D T+KVWD +
Sbjct: 69 GSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCL 128
Query: 264 RSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQN 323
+L GH V SV + P + + S +D +KLWD ++G+ + + GH V V ++ +
Sbjct: 129 TTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPD 188
Query: 324 GNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWL 383
G +L++S D IKL+D+ K L + RGH V ++A+ P SGS DG+I W
Sbjct: 189 GEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSP-DGYLLASGSEDGTIRVWD 247
Query: 384 VGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFW 425
+ + H N+V LAW P G L SGS D T + W
Sbjct: 248 LRTGECVQTLSG-HTNSVTSLAWSPDGKRLASGSADGTIRIW 288
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 207 bits (530), Expect = 1e-61
Identities = 76/244 (31%), Positives = 124/244 (50%), Gaps = 2/244 (0%)
Query: 182 LQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDL 241
L+ H + + +S + + +G G IK W + H VRD++
Sbjct: 5 LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGT 64
Query: 242 KFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKS 301
S S D T+++WD + R+LTGH V SV + P +L S +D +K+WD ++
Sbjct: 65 YLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVET 124
Query: 302 GRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALA 361
G+ L + GH + V V ++ +G +V ++S+D IKL+D+R K + + GH +V ++A
Sbjct: 125 GKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVA 184
Query: 362 WHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHT 421
+ P E +S S DG+I W + + H+N V +A+ P GYLL SGS D T
Sbjct: 185 FSP-DGEKLLSSSSDGTIKLWDL-STGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGT 242
Query: 422 TKFW 425
+ W
Sbjct: 243 IRVW 246
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 170 bits (431), Expect = 4e-46
Identities = 87/309 (28%), Positives = 147/309 (47%), Gaps = 15/309 (4%)
Query: 126 NPSTSFAAKFVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAH 185
+ + S K + N S+ + + +G L+ +L + S ++L+ H
Sbjct: 9 SENKSKLLKKSELGPSLNSLSLLSLGSSESGILLLALLSDSLVSLPDLSS----LLLRGH 64
Query: 186 DHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNN--VKANKSAHKESVRDLSFCRTDLKF 243
+ +I S+ +S + ++SG G IK W + +K+ + H SV L+ D
Sbjct: 65 EDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNS 124
Query: 244 ---CSCSDDTTVKVWDFARCQEE-RSLTGHGWDVKSVDWHPTKSLLVSGG-KDSLVKLWD 298
S S D TVK+WD + + R+L GH V S+ + P LL SG D +KLWD
Sbjct: 125 ILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWD 184
Query: 299 AKSGRELCSFHGHKNMVLCVKWNQNGNW-VLTASKDQIIKLYDIRAMKELES-FRGHRKD 356
++G+ L + GH + V + ++ +G + + S D I+L+D+ K L S GH
Sbjct: 185 LRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDS 244
Query: 357 VTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSG 416
V + ++ P SGS DG+I W + + + + H ++V +A+ P G LL SG
Sbjct: 245 VVS-SFSP-DGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASG 302
Query: 417 SNDHTTKFW 425
S+D T + W
Sbjct: 303 SSDGTVRLW 311
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 166 bits (420), Expect = 1e-44
Identities = 80/302 (26%), Positives = 141/302 (46%), Gaps = 13/302 (4%)
Query: 134 KFVHTSLNKNRCSINRVLW-TPTGRRLITGSQSGEFT--LWNGQS-FNFEMILQAHDHAI 189
K + + + S++++ +P G ++ S S + T LW+ + L+ H ++
Sbjct: 99 KLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESV 158
Query: 190 RSMVWSHNDNWMVSGDDG-GAIKYWQNNMNNVKANKSAHKESVRDLSFC-RTDLKFCSCS 247
S+ +S + + SG G IK W + + H + V L+F L S S
Sbjct: 159 TSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGS 218
Query: 248 DDTTVKVWDFARCQEERS-LTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGR-EL 305
D T+++WD + + RS L+GH D + P SLL SG D ++LWD +S L
Sbjct: 219 SDGTIRLWDLSTGKLLRSTLSGH-SDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLL 277
Query: 306 CSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKE--LESFRGHRKDVTALAWH 363
+ GH + VL V ++ +G + + S D ++L+D+ K + +GH V++L++
Sbjct: 278 RTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFS 337
Query: 364 PFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTK 423
P GS DG+I W + P + + V +++ P G ++ SGS D T +
Sbjct: 338 PDGSLLVSGGSDDGTIRLWDLRTGKPLKTLE--GHSNVLSVSFSPDGRVVSSGSTDGTVR 395
Query: 424 FW 425
W
Sbjct: 396 LW 397
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 163 bits (413), Expect = 1e-43
Identities = 78/286 (27%), Positives = 137/286 (47%), Gaps = 9/286 (3%)
Query: 146 SINRVLWTPTGRRLITGSQSGEFT-LWNGQSFNFEMILQAHDHAIRSMVWSHNDNWM-VS 203
S+ + ++P G+ L +GS LW+ ++ L H + S+ +S + + S
Sbjct: 157 SVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIAS 216
Query: 204 GDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEE 263
G G I+ W + + + + SF S S D T+++WD
Sbjct: 217 GSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSL 276
Query: 264 -RSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELC--SFHGHKNMVLCVKW 320
R+L+GH V SV + P LL SG D V+LWD ++G+ L + GH+ V + +
Sbjct: 277 LRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSF 336
Query: 321 NQNGNWVLTA-SKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSI 379
+ +G+ +++ S D I+L+D+R K L++ GH +V ++++ P SGS DG++
Sbjct: 337 SPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGH-SNVLSVSFSP-DGRVVSSGSTDGTV 394
Query: 380 FHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFW 425
W + + + H + V L + P G L SGS+D+T + W
Sbjct: 395 RLWDLSTGSLLRNLDG-HTSRVTSLDFSPDGKSLASGSSDNTIRLW 439
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 152 bits (386), Expect = 2e-41
Identities = 62/261 (23%), Positives = 114/261 (43%), Gaps = 16/261 (6%)
Query: 93 QIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSFAAKFVHT----SLNKNRC--- 145
I++W ++ + L T + VA + + + + T L C
Sbjct: 32 TIKVWDLETGE---LLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRT 88
Query: 146 ------SINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDN 199
++ V ++P GR L + S+ +W+ ++ L+ H + S+ +S +
Sbjct: 89 LTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGT 148
Query: 200 WMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFAR 259
++ S G IK W A + H V ++F K S S D T+K+WD +
Sbjct: 149 FVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLST 208
Query: 260 CQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVK 319
+ +L GH V SV + P LL SG +D +++WD ++G + + GH N V +
Sbjct: 209 GKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLA 268
Query: 320 WNQNGNWVLTASKDQIIKLYD 340
W+ +G + + S D I+++D
Sbjct: 269 WSPDGKRLASGSADGTIRIWD 289
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 138 bits (349), Expect = 2e-36
Identities = 48/164 (29%), Positives = 78/164 (47%), Gaps = 2/164 (1%)
Query: 262 EERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWN 321
R+L GH V V + P LL +G D +K+WD ++G L + GH V V +
Sbjct: 1 LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAAS 60
Query: 322 QNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFH 381
+G ++ + S D+ I+L+D+ + + + GH V+++A+ P S S D +I
Sbjct: 61 ADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSP-DGRILSSSSRDKTIKV 119
Query: 382 WLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFW 425
W V + H + V +A+ P G + S S D T K W
Sbjct: 120 WDVETGKCLTTLRG-HTDWVNSVAFSPDGTFVASSSQDGTIKLW 162
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 135 bits (339), Expect = 8e-34
Identities = 74/250 (29%), Positives = 122/250 (48%), Gaps = 9/250 (3%)
Query: 139 SLNKNRCSINRVLWTPTGRRLI-TGSQSGEFTLWNGQSFN-FEMILQAHDHAIRSMVWSH 196
+L + ++ + ++P G LI +GS G LW+ + L H ++ +S
Sbjct: 193 TLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSP 251
Query: 197 NDNWMVSGDDGGAIKYW-QNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVW 255
+ + + SG G I+ W + +++ S H SV ++F S S D TV++W
Sbjct: 252 DGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLW 311
Query: 256 DFA--RCQEERSLTGHGWDVKSVDWHPTKSLLVSGG-KDSLVKLWDAKSGRELCSFHGHK 312
D + +L GH V S+ + P SLLVSGG D ++LWD ++G+ L + GH
Sbjct: 312 DLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHS 371
Query: 313 NMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVS 372
N VL V ++ +G V + S D ++L+D+ L + GH VT+L + P + S
Sbjct: 372 N-VLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSP-DGKSLAS 429
Query: 373 GSLDGSIFHW 382
GS D +I W
Sbjct: 430 GSSDNTIRLW 439
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 128 bits (321), Expect = 2e-31
Identities = 56/213 (26%), Positives = 101/213 (47%), Gaps = 6/213 (2%)
Query: 134 KFVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWN-GQSFNFEMILQAHDHAIRSM 192
K + ++L+ + S+ ++P G L +GS G LW+ S + L H ++ S+
Sbjct: 232 KLLRSTLSGHSDSVVSS-FSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSV 290
Query: 193 VWSHNDNWMVSGDDGGAIKYW--QNNMNNVKANKSAHKESVRDLSFCRTDLKF-CSCSDD 249
+S + + SG G ++ W + H+ V LSF SDD
Sbjct: 291 AFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDD 350
Query: 250 TTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFH 309
T+++WD + ++L GH +V SV + P ++ SG D V+LWD +G L +
Sbjct: 351 GTIRLWDLRTGKPLKTLEGHS-NVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLD 409
Query: 310 GHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIR 342
GH + V + ++ +G + + S D I+L+D++
Sbjct: 410 GHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLK 442
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 95.9 bits (237), Expect = 7e-21
Identities = 51/173 (29%), Positives = 85/173 (49%), Gaps = 4/173 (2%)
Query: 139 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQS--FNFEMILQAHDHAIRSMVWSH 196
+L+ + S+ V ++P G+ L +GS G LW+ ++ + L+ H+ + S+ +S
Sbjct: 279 TLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSP 338
Query: 197 NDNWMVSGD-DGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVW 255
+ + +VSG D G I+ W H +V +SF S S D TV++W
Sbjct: 339 DGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHS-NVLSVSFSPDGRVVSSGSTDGTVRLW 397
Query: 256 DFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSF 308
D + R+L GH V S+D+ P L SG D+ ++LWD K+ + SF
Sbjct: 398 DLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKTSLKSVSF 450
|
Length = 466 |
| >gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 | Back alignment and domain information |
|---|
Score = 79.4 bits (196), Expect = 3e-15
Identities = 32/178 (17%), Positives = 42/178 (23%), Gaps = 5/178 (2%)
Query: 490 AMPLSIPSFDSSAQGEQKQPLSMPLGAPPLPPGPHPSLLTANQQQGYQQNPPPMPPQQHQ 549
+ + + Q Q +P G PP P Q GY Q P P Q
Sbjct: 158 EVEAQLQQRQQAPQLPQPPQQVLPQGMPP-RQAAFPQQGPPEQPPGYPQPPQGHPEQVQP 216
Query: 550 GHPQQMPHLAMPPQNMPQLQPPSHLPMLQHPHISRPPPQMPQLGMPSPMPGSLPTPSSHP 609
P A +P P P+ Q P Q+ P P P P
Sbjct: 217 QQFLPAPSQAPAQPPLPPQLPQQPPPLQQPQ----FPGLSQQMPPPPPQPPQQQQQPPQP 272
Query: 610 MSMPVPVGMQGSMNQMAPPMQQGHYMGMNPMHSGGGAPPQVGGFPNGMQGPPNSSGPQ 667
+ P P + P PQ + Q
Sbjct: 273 QAQPPPQNQPTPHPGLPQGQNAPLPPPQQPQLLPLVQQPQGQQRGPQFREQLVQLSQQ 330
|
Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804 |
| >gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 | Back alignment and domain information |
|---|
Score = 76.7 bits (189), Expect = 2e-14
Identities = 46/200 (23%), Positives = 57/200 (28%), Gaps = 12/200 (6%)
Query: 496 PSFDSSAQGEQKQPLSMPLGAP---PLPPGPHPSLLTANQ---QQGYQQNPPPMPPQQHQ 549
D S G +P P AP P P P +L+ + Q +Q P +P Q
Sbjct: 119 LQPDPSLWGTAPKPEPQPPQAPESQPQPQTPAQKMLSLEEVEAQLQQRQQAPQLPQPPQQ 178
Query: 550 GHPQQMPHLAMP-PQNMPQLQPPSHLPMLQHPHISRPPPQMPQLGMPSPMPGSLPT-PSS 607
PQ MP PQ P QPP + Q P Q +P LP
Sbjct: 179 VLPQGMPPRQAAFPQQGPPEQPPGYPQPPQGHPEQVQPQQFLPAPSQAPAQPPLPPQLPQ 238
Query: 608 HPMSMPVPVGMQGSMNQMAPPMQQGHYMGMNPMHSGGGAP----PQVGGFPNGMQGPPNS 663
P + P S PP Q P P G P G P
Sbjct: 239 QPPPLQQPQFPGLSQQMPPPPPQPPQQQQQPPQPQAQPPPQNQPTPHPGLPQGQNAPLPP 298
Query: 664 SGPQMYPQGGAFNRPQGQMP 683
+ Q + P
Sbjct: 299 PQQPQLLPLVQQPQGQQRGP 318
|
Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804 |
| >gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 | Back alignment and domain information |
|---|
Score = 62.9 bits (153), Expect = 4e-10
Identities = 40/159 (25%), Positives = 44/159 (27%), Gaps = 12/159 (7%)
Query: 485 PGVGVAMPLSIPSFDSSAQGEQKQPLSMPLGAPPLPPGPHP-----SLLTANQQQGYQQN 539
L A Q+ P P G P P G L A Q Q
Sbjct: 172 LPQPPQQVLPQGMPPRQAAFPQQGPPEQPPGYPQPPQGHPEQVQPQQFLPAPSQAPAQPP 231
Query: 540 PPPMPPQQHQGHPQQMPHLAMPPQNMPQLQPPSHLPMLQHPHISR--PPPQMPQLGMPSP 597
PP PQQ P Q P Q MP PP Q P + PPPQ P
Sbjct: 232 LPPQLPQQPP--PLQQPQFPGLSQQMPP-PPPQPPQQQQQPPQPQAQPPPQNQPTPHPGL 288
Query: 598 MPGSLPT--PSSHPMSMPVPVGMQGSMNQMAPPMQQGHY 634
G P P +P+ QG Q
Sbjct: 289 PQGQNAPLPPPQQPQLLPLVQQPQGQQRGPQFREQLVQL 327
|
Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 6e-09
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 301 SGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYD 340
SG L + GH V V ++ +G ++ + S D IKL+D
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 | Back alignment and domain information |
|---|
Score = 59.0 bits (143), Expect = 7e-09
Identities = 28/182 (15%), Positives = 37/182 (20%), Gaps = 8/182 (4%)
Query: 539 NPPPMPPQQHQGHPQQMPHLAMPPQNMPQLQ----PPSHLPMLQHPHISRPPPQMPQLGM 594
P Q P Q P L P P +P ++
Sbjct: 96 KTSTFSPCQSGYEASTDPEYIPDLQPDPSLWGTAPKPEPQPPQAPESQPQPQTPAQKMLS 155
Query: 595 PSPMPGSLPTPSSHPMS-MPVPVGMQGSMNQMAPPMQQGHYMGMNPMHSGGGAPPQVGGF 653
+ L P P + M Q P +
Sbjct: 156 LEEVEAQLQQRQQAPQLPQPPQQVLPQGMPPRQAAFPQQGPPEQPPGYPQPPQGHPEQVQ 215
Query: 654 PNGMQGPPNSSGPQMYPQGGAFNRPQGQMPMMPGYNPFQSGNQSGMAPPPPPGPPPHGQS 713
P P+ + Q PQ P+ P S P PP Q
Sbjct: 216 PQQFLPAPSQAPAQPPLPP---QLPQQPPPLQQPQFPGLSQQMPPPPPQPPQQQQQPPQP 272
Query: 714 QQ 715
Q
Sbjct: 273 QA 274
|
Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 7e-09
Identities = 16/39 (41%), Positives = 22/39 (56%)
Query: 260 CQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWD 298
+ R+L GH V SV + P +LL SG D V++WD
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 2e-08
Identities = 15/38 (39%), Positives = 20/38 (52%)
Query: 261 QEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWD 298
+ ++L GH V SV + P L SG D +KLWD
Sbjct: 3 ELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 6e-08
Identities = 11/39 (28%), Positives = 22/39 (56%)
Query: 302 GRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYD 340
G+ L + GH V V ++ +GN + + S D ++++D
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional | Back alignment and domain information |
|---|
Score = 54.9 bits (132), Expect = 1e-07
Identities = 36/159 (22%), Positives = 45/159 (28%), Gaps = 17/159 (10%)
Query: 467 PTTPGPFAPGLTRNEGTIPG-------------VGVAMPLSIPSFDSSAQGEQKQPLSMP 513
P PGP P L PG A P P + + S
Sbjct: 2840 PPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFA 2899
Query: 514 LGAPPLPPGPHPSLLTANQQQGYQQNPP-PMPPQQHQGHPQQMPHLAMPPQNMPQLQPPS 572
L P P Q Q PP P PP PQ P LA +P
Sbjct: 2900 LPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQ--PPLAPTTDPAGAGEPSG 2957
Query: 573 HLPMLQHPHISRPPPQMPQLGMPSPMPGSLPTPSSHPMS 611
+P + +P+ +P P P S P+S
Sbjct: 2958 AVPQPWLGALVPGRVAVPRFRVPQPAP-SREAPASSTPP 2995
|
Length = 3151 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 3e-07
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 344 MKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHW 382
K L + +GH VT++A+ P SGS DG++ W
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSP-DGNLLASGSDDGTVRVW 38
|
Length = 39 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 4e-07
Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 344 MKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHW 382
+ L++ +GH VT++A+ P +Y SGS DG+I W
Sbjct: 2 GELLKTLKGHTGPVTSVAFSP-DGKYLASGSDDGTIKLW 39
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional | Back alignment and domain information |
|---|
Score = 53.0 bits (127), Expect = 4e-07
Identities = 46/167 (27%), Positives = 73/167 (43%), Gaps = 16/167 (9%)
Query: 200 WMVSGDDG-GAIKYWQNNMNNVKANK-SAHKESVRDLSF--CRTDLKFCSCSDDTTVKVW 255
W V G GAI+ +N M K H S+ DL F C +++ S S+D T++VW
Sbjct: 45 WEVEGGGLIGAIRL-ENQMRKPPVIKLKGHTSSILDLQFNPCFSEI-LASGSEDLTIRVW 102
Query: 256 DFARCQEERS--------LTGHGWDVKSVDWHPTKS-LLVSGGKDSLVKLWDAKSGRELC 306
+ E L GH + +DW+P ++ S G DS V +WD ++ +
Sbjct: 103 EIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAF 162
Query: 307 SFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGH 353
+ K + +KWN GN + + + + D R + SF H
Sbjct: 163 QINMPKKLS-SLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIH 208
|
Length = 568 |
| >gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal | Back alignment and domain information |
|---|
Score = 52.7 bits (126), Expect = 6e-07
Identities = 58/201 (28%), Positives = 68/201 (33%), Gaps = 22/201 (10%)
Query: 532 QQQGYQQNPP--PMPPQQHQGHPQQMPHLAMPPQNMPQLQPPSHLP--MLQHPHISRPPP 587
Q Q QQ M PQQ QG Q+P PPQ PQ LP M Q P + P
Sbjct: 248 QAQMGQQQQGQGGMQPQQMQGGQMQVPMQQQPPQQQPQQSQLGMLPNQMQQMPGGGQGGP 307
Query: 588 QMPQLGMPSPMPGSLPTPSSHPMSMPVPVGMQGSMNQMAPPMQQGHYMGMNPMHSGGGAP 647
P +G P PG++P + V Q + QM +G GG
Sbjct: 308 GQP-MGPPPQRPGAVPQGGQA-VQQGVMSAGQQQLKQMKLRNMRGQQQTQQQQQQQGGNH 365
Query: 648 PQVGGFPNGMQGPPNSSGPQMYPQGGAFNR-----------PQGQMPMMPGYNPFQS--G 694
P Q G QM G + QGQ MM +P
Sbjct: 366 PAAHQQQMNQQVGQ---GGQMVALGYLNIQGNQGGLGANPMQQGQPGMMSSPSPVPQVQT 422
Query: 695 NQSGMAPPPPPGPPPHGQSQQ 715
NQS PP P P P G Q
Sbjct: 423 NQSMPQPPQPSVPSPGGPGSQ 443
|
The approx. 70 residue Med15 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, Med15 is a critical transducer of gene activation signals that control early metazoan development. Length = 768 |
| >gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional | Back alignment and domain information |
|---|
Score = 52.6 bits (126), Expect = 7e-07
Identities = 58/263 (22%), Positives = 70/263 (26%), Gaps = 16/263 (6%)
Query: 455 GRMPGNFPLPEGPTTPGPFAPGLTRNEGTIPGVGVAMPLSIPSFDSSAQGEQKQPLSMPL 514
P P TP P P R A P + G
Sbjct: 2705 PPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPP-------AVPAGPATPGGPARP 2757
Query: 515 GAPPLPPGPHPSLLTANQQQGYQQNPPPMPPQQHQGHPQQMPHLAMP-PQNMPQLQPPSH 573
PP GP A G + + +P P L P +
Sbjct: 2758 ARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAA 2817
Query: 574 LPMLQHPHISRPPPQMPQLGMPSPMPGSLPTPSSHPMSMPVPVGMQGSMNQMAPPMQQGH 633
LP P PPP Q P P PG P P S P+ V G G + + P +
Sbjct: 2818 LPPAASPAGPLPPPTSAQPTAPPPPPG--PPPPSLPLGGSVAPG--GDVRRRPPS-RSPA 2872
Query: 634 YMGMNPMHSGGG--APPQVGGFPNGMQGPPNSSGPQMYPQGGAFNRPQGQMPMMPGYNPF 691
P A P V PP+ PQ +PQ Q P P P
Sbjct: 2873 AKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQP- 2931
Query: 692 QSGNQSGMAPPPPPGPPPHGQSQ 714
PP P P G +
Sbjct: 2932 PPPPPPRPQPPLAPTTDPAGAGE 2954
|
Length = 3151 |
| >gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal | Back alignment and domain information |
|---|
Score = 52.3 bits (125), Expect = 8e-07
Identities = 39/259 (15%), Positives = 53/259 (20%), Gaps = 10/259 (3%)
Query: 466 GPTTPGPFAPGLTRNEGTIPGVGVAMPLSIPSFDSSAQGEQKQPLSMPLGAPPLPPGP-- 523
GP T L G P + + G Q + P P
Sbjct: 106 GPGTASNLLQSLNVRGQMPMGAAGMGPHQMSRVGTMQPGGQAGGMMQQSSGQPQSQQPNQ 165
Query: 524 -----HPSLLTANQQQGYQQNPP--PMPPQQHQGHPQQMPHLAMPPQNMPQLQPPSHLPM 576
+ A QQ P PPQ Q Q P
Sbjct: 166 MGPQQGQAQGQAGGMNQGQQGPVGQQQPPQMGQPGMPGGGGQGQMQQQGQPGGQQQQNPQ 225
Query: 577 LQHPHISRPPPQMPQLGMPSPMPGSLPTPSSHPMSMPVPVGMQGSMNQMAPPMQQGHYMG 636
+Q ++ QM Q P+ + M G M
Sbjct: 226 MQQQLQNQQQQQMDQQQGPADAQAQMGQQQQGQGGMQPQQMQGGQMQVPMQQQPPQQQPQ 285
Query: 637 MNPMHSGGGAPPQVGGFPNGMQGPPNSSGPQMYPQGGAFNRPQGQMPMMPGYNPFQSGNQ 696
+ + Q+ G G G P PQ P Q +M +
Sbjct: 286 QSQLGMLPNQMQQMPGGGQGGPGQPMGPPPQR-PGAVPQGGQAVQQGVMSAGQQQLKQMK 344
Query: 697 SGMAPPPPPGPPPHGQSQQ 715
Q
Sbjct: 345 LRNMRGQQQTQQQQQQQGG 363
|
The approx. 70 residue Med15 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, Med15 is a critical transducer of gene activation signals that control early metazoan development. Length = 768 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 2e-06
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 390 QVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFW 425
+ H V +A+ P G LL SGS+D T + W
Sbjct: 3 LLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVW 38
|
Length = 39 |
| >gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional | Back alignment and domain information |
|---|
Score = 51.1 bits (122), Expect = 2e-06
Identities = 38/192 (19%), Positives = 56/192 (29%), Gaps = 14/192 (7%)
Query: 454 AGRMPGNFPLPEGPTTPGPFAPGLTRNEGTIPGVGVAMPLSIPSFDSSAQGEQKQPLSMP 513
AG + + + P +A ++P S A + P
Sbjct: 2777 AGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQP 2836
Query: 514 LGAPPLPPGPHPSLLTAN---------QQQGYQQNPPPMPPQQHQGHPQQMPHLAMPPQN 564
APP PPGP P L +++ ++P P + +++ A+
Sbjct: 2837 T-APPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRST 2895
Query: 565 MPQLQPPSHLPMLQHPHISRPP---PQMPQLGMPSPMPGSLPTPSSHPMSMPVPVGMQGS 621
PP P PP PQ P P P P P P P G G
Sbjct: 2896 ESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAG-AGE 2954
Query: 622 MNQMAPPMQQGH 633
+ P G
Sbjct: 2955 PSGAVPQPWLGA 2966
|
Length = 3151 |
| >gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional | Back alignment and domain information |
|---|
Score = 50.7 bits (121), Expect = 2e-06
Identities = 27/89 (30%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Query: 266 LTGHGWDVKSVDWHPT-KSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNG 324
L GH V V +HP+ ++L S G D +V +WD + G+ + H + + ++WN +G
Sbjct: 121 LQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDG 180
Query: 325 NWVLTASKDQIIKLYDIRAMKELESFRGH 353
+ + T SKD+ + + D R + S H
Sbjct: 181 SLLCTTSKDKKLNIIDPRDGTIVSSVEAH 209
|
Length = 493 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 3e-06
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 225 SAHKESVRDLSFCRTDLKFCSCSDDTTVKVWD 256
H V ++F S SDD TV+VWD
Sbjct: 8 KGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Score = 50.5 bits (120), Expect = 3e-06
Identities = 42/144 (29%), Positives = 67/144 (46%), Gaps = 6/144 (4%)
Query: 242 KFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTK-SLLVSGGKDSLVKLWDAK 300
+ S + + V+VWD AR Q + H V S+D+ +LL SG D VKLW
Sbjct: 547 QVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSIN 606
Query: 301 SGRELCSFHGHKNMVLCVKW-NQNGNWVLTASKDQIIKLYDIRAMK-ELESFRGHRKDVT 358
G + + N + CV++ +++G + S D + YD+R K L + GH K V+
Sbjct: 607 QGVSIGTIKTKAN-ICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVS 665
Query: 359 ALAWHPFHEEYFVSGSLDGSIFHW 382
+ + VS S D ++ W
Sbjct: 666 YVRF--VDSSTLVSSSTDNTLKLW 687
|
Length = 793 |
| >gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 6e-06
Identities = 37/180 (20%), Positives = 43/180 (23%), Gaps = 26/180 (14%)
Query: 457 MPGNFPLPEGPTTPGPFAPGLTRNEGTIPGVGVAMPLSIPSFDSSAQGEQKQPLSMPLGA 516
+P P P P P P Q P P
Sbjct: 180 LPQGMP-PRQAAFPQQGPPEQPPGYPQPPQGHPEQV--------QPQQFLPAPSQAPAQP 230
Query: 517 PPLPPGPHPSLLTANQQQGYQQNPPPM----PPQQHQGHPQQMPHLAMPPQNMPQLQPPS 572
P P P Q QQ P P PQQ P P P+
Sbjct: 231 PLPPQLP-------QQPPPLQQPQFPGLSQQMPPPPPQPPQQQQQPPQPQAQPPPQNQPT 283
Query: 573 HLP-MLQHPHISRPPPQMPQLGMPSPMPGSLPTPSSHPMSMPVPVGMQGSMNQMAPPMQQ 631
P + Q + PPPQ PQL P +Q S Q Q+
Sbjct: 284 PHPGLPQGQNAPLPPPQQPQLLPLVQQPQGQQRGPQFR-----EQLVQLSQQQREALSQE 338
|
Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 8e-06
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 397 HDNTVWDLAWHPIGYLLCSGSNDHTTKFW 425
H V +A+ P G L SGS+D T K W
Sbjct: 11 HTGPVTSVAFSPDGKYLASGSDDGTIKLW 39
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|130689 TIGR01628, PABP-1234, polyadenylate binding protein, human types 1, 2, 3, 4 family | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 9e-06
Identities = 27/123 (21%), Positives = 32/123 (26%), Gaps = 22/123 (17%)
Query: 587 PQMPQLGMPSPMPGSLPTPSSHPMSMPVPVGMQGSMNQMAPPMQQGHYMGMNPMHSGGGA 646
P+M QL M SPM G++ P P QG Q G
Sbjct: 380 PRMRQLPMGSPMGGAMGQP---------PYYGQGPQ-QQFNGQPLGWPRMSMMP------ 423
Query: 647 PPQVGGFPNGMQGPPNSSGPQMYPQGGAFNRPQGQMPMMPGYNPFQSGNQSGMAPPPPPG 706
P G GP +G A +R P P P
Sbjct: 424 ------TPMGPGGPLRPNGLAPMNAVRAPSRNAQNAAQKPPMQPVMYPPNYQSLPLSQDL 477
Query: 707 PPP 709
P P
Sbjct: 478 PQP 480
|
These eukaryotic proteins recognize the poly-A of mRNA and consists of four tandem RNA recognition domains at the N-terminus (rrm: pfam00076) followed by a PABP-specific domain (pfam00658) at the C-terminus. The protein is involved in the transport of mRNA's from the nucleus to the cytoplasm. There are four paralogs in Homo sapiens which are expressed in testis (GP:11610605_PABP3 ), platelets (SP:Q13310_PABP4 ), broadly expressed (SP:P11940_PABP1) and of unknown tissue range (SP:Q15097_PABP2). Length = 562 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 1e-05
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 225 SAHKESVRDLSFCRTDLKFCSCSDDTTVKVWD 256
H V ++F S SDD T+K+WD
Sbjct: 9 KGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family | Back alignment and domain information |
|---|
Score = 48.5 bits (115), Expect = 1e-05
Identities = 66/246 (26%), Positives = 76/246 (30%), Gaps = 21/246 (8%)
Query: 488 GVAMPLSIPSFDSSAQGEQKQPLSMPLGAPPLPPGPHPSLLTANQQQGYQQNPPPMPPQQ 547
G A+ S P SAQ Q + P P P P L + Q+ P P PP Q
Sbjct: 186 GAALAPSAPPPTPSAQAVPPQGSPIAAQPAPQPQQPSPLSLISAPSLHPQRLPSPHPPLQ 245
Query: 548 HQGHPQQMPHLAMPPQNMPQLQPPSHLPM-------------LQHPHISRPPPQ--MPQL 592
Q QQ P P P Q H P LQHP + P P
Sbjct: 246 PQTASQQSPQPPAPSSRHP--QSSHHGPGPPMPHALQQGPVFLQHPSSNPPQPFGLAQSQ 303
Query: 593 GMPSPMPGSLPTPSSHPMSMPVPVGMQGSMNQMAPPMQQGHYMGMNPMHSGGGAPPQVGG 652
P P+P S P S Q Q PP ++ P P Q
Sbjct: 304 VPPLPLPSQAQPHSHTPPSQSALQPQQPPREQPLPPAPSMPHIKPPPTTPIPQLPNQSHK 363
Query: 653 FPNGMQGP-PNSSGPQMYPQGGA---FNRPQGQMPMMPGYNPFQSGNQSGMAPPPPPGPP 708
P +QGP P P P A + P P Q QS P PP
Sbjct: 364 HPPHLQGPSPFPQMPSNLPPPPALKPLSSLPTHHPPSAHPPPLQLMPQSQPLQSVPAQPP 423
Query: 709 PHGQSQ 714
QSQ
Sbjct: 424 VLTQSQ 429
|
Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979 |
| >gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 1e-05
Identities = 21/136 (15%), Positives = 28/136 (20%), Gaps = 12/136 (8%)
Query: 502 AQGEQKQPLSM----PLGAPPLPPGPHPSLLTANQQQGYQQNPPPM----PPQQHQGHPQ 553
Q + P P LP GP + Q Y P M P P
Sbjct: 82 DQQQHNTPTGSPAANPPATFALPAGPAGPTIQTEPGQLYPVQVPVMVTQNPANSPLDQPA 141
Query: 554 QMPHLAM--PPQNMPQLQPPSHLPMLQHPHISRPPPQMP-QLGMPSPMPGSLPTPSSH-P 609
Q L P + Q P P G+ S
Sbjct: 142 QQRALQQLQQRYGAPASGQLPSQQQSAQKNDESQLQQQPNGETPPQQTDGAGDDESEALV 201
Query: 610 MSMPVPVGMQGSMNQM 625
++ +
Sbjct: 202 RLREADGTLEQRIKGA 217
|
Transcription initiation factor IIA (TFIIA) is a heterotrimer, the three subunits being known as alpha, beta, and gamma, in order of molecular weight. The N and C-terminal domains of the gamma subunit are represented in pfam02268 and pfam02751, respectively. This family represents the precursor that yields both the alpha and beta subunits. The TFIIA heterotrimer is an essential general transcription initiation factor for the expression of genes transcribed by RNA polymerase II. Together with TFIID, TFIIA binds to the promoter region; this is the first step in the formation of a pre-initiation complex (PIC). Binding of the rest of the transcription machinery follows this step. After initiation, the PIC does not completely dissociate from the promoter. Some components, including TFIIA, remain attached and re-initiate a subsequent round of transcription. Length = 332 |
| >gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional | Back alignment and domain information |
|---|
Score = 47.6 bits (113), Expect = 2e-05
Identities = 62/279 (22%), Positives = 81/279 (29%), Gaps = 52/279 (18%)
Query: 454 AGRMPGNF--PLPEGPTTPGPFAPGLTRNEGTIPGVGVAMPLSIPSFDSSAQGEQKQPLS 511
A PG P P+ P P AP + +E V M I + A + P
Sbjct: 2494 AAPDPGGGGPPDPDAPPAPSRLAPAILPDEPVGEPVHPRMLTWIRGLEELASDDAGDP-- 2551
Query: 512 MPLGAPPLPPGPHPSLLTANQQQGYQQNPPPMPP----QQHQGHPQQMPHLAMP------ 561
PPLPP P+ A + P P P P P A P
Sbjct: 2552 ----PPPLPPAAPPA---APDRSVPPPRPAPRPSEPAVTSRARRPDAPPQSARPRAPVDD 2604
Query: 562 PQNMPQLQPPSHLPMLQHPHISRPPPQMPQLGMPSPMPGSLPTPSSHPMSMPVPVGMQGS 621
+ PPS LP H PPP PSP P + P ++P P +
Sbjct: 2605 RGDPRGPAPPSPLPPDTHA--PDPPP-------PSPSPAANEPDPHPPPTVPPP---ERP 2652
Query: 622 MNQMAPPMQQGHYMGMNPMHSGG-----------GAPPQVGGFPNGMQGPPNSSGPQMYP 670
+ AP + A P VG + PP P+
Sbjct: 2653 RDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPE--- 2709
Query: 671 QGGAFNRPQGQMPMMPGYNPFQSGNQSGMAPPPPPGPPP 709
P + P + Q+ A P P PP
Sbjct: 2710 -----PAPHALVSATPLPPGPAAARQASPALPAAPAPPA 2743
|
Length = 3151 |
| >gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal | Back alignment and domain information |
|---|
Score = 47.3 bits (112), Expect = 2e-05
Identities = 58/270 (21%), Positives = 66/270 (24%), Gaps = 42/270 (15%)
Query: 480 NEGTIPGVGVAMPLSIPSFDSSAQGEQKQPLSMPLGAPPLPP------------------ 521
+ + G MP I + + + P P+G P P
Sbjct: 58 AQQQVLQGGQGMPDPINALQNLTGQGTRGPQMGPMGPGPGRPMGQQMGGPGTASNLLQSL 117
Query: 522 -------------GPHPSLLTANQQQGYQQNP--PPMPPQQHQGHPQQMPHLAMPPQNMP 566
GPH Q G Q Q P QM P Q
Sbjct: 118 NVRGQMPMGAAGMGPHQMSRVGTMQPGGQAGGMMQQSSGQPQSQQPNQM----GPQQGQA 173
Query: 567 QLQPPSHLPMLQHPHISRPPPQMPQLGMPSPMPGSLPTPSSHPMSMP--VPVGMQGSMNQ 624
Q Q Q P + PPQM Q GMP P P Q NQ
Sbjct: 174 QGQAGGMNQGQQGPVGQQQPPQMGQPGMPGGGGQGQMQQQGQPGGQQQQNPQMQQQLQNQ 233
Query: 625 MAPPMQQGHYMGMNPMHSGGGAPPQVGGFPNGMQGPPNSSGPQMYPQGGAFNRPQGQMPM 684
M Q G Q G P MQG Q P + Q M
Sbjct: 234 QQQQMDQQQGPADAQAQMGQQQQGQGGMQPQQMQGGQMQVPMQQQPPQQQPQQSQLGMLP 293
Query: 685 MPGYNPFQSGNQSGMAPPPPPGPPPHGQSQ 714
Q P P GPPP
Sbjct: 294 NQ---MQQMPGGGQGGPGQPMGPPPQRPGA 320
|
The approx. 70 residue Med15 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, Med15 is a critical transducer of gene activation signals that control early metazoan development. Length = 768 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 3e-05
Identities = 12/39 (30%), Positives = 19/39 (48%)
Query: 175 SFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYW 213
S L+ H + S+ +S + ++ SG D G IK W
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLW 39
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal | Back alignment and domain information |
|---|
Score = 46.9 bits (111), Expect = 3e-05
Identities = 51/230 (22%), Positives = 57/230 (24%), Gaps = 22/230 (9%)
Query: 503 QGEQKQPLSMPLGAPPLPPGPHPSLLTANQQQGYQQNPPPMPPQQHQGHPQQMPHLA--M 560
Q G + QQQ QQ P QQMP
Sbjct: 247 AQAQMGQQQQGQGGMQPQQMQGGQMQVPMQQQPPQQQPQQSQLGMLPNQMQQMPGGGQGG 306
Query: 561 PPQNMPQLQPPSHLPMLQHPHISRPPPQMPQLGMPSPMPGSLPTPSSHPMSMPVPVGMQG 620
P Q M PP P + G L + QG
Sbjct: 307 PGQPMG---PPPQRPGAVPQGGQAVQQGVMSAGQQQLKQMKLRNMRGQQQTQQ-QQQQQG 362
Query: 621 SMNQMAPPMQQGHYMG----MNPMHSGGGAPPQVGGFPNGMQG--PPNSSGPQMYPQ--G 672
+ A Q +G M + Q G N MQ P S P PQ
Sbjct: 363 GNHPAAHQQQMNQQVGQGGQMVALGYLNIQGNQGGLGANPMQQGQPGMMSSPSPVPQVQT 422
Query: 673 GAFNRPQGQM----PMMPGYNPFQSGNQSGMAPPPP---PGPPPHGQSQQ 715
Q P PG P QS GM P PP P P P
Sbjct: 423 NQSMPQPPQPSVPSPGGPGSQPPQSV-SGGMIPSPPALMPSPSPQMSQSP 471
|
The approx. 70 residue Med15 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, Med15 is a critical transducer of gene activation signals that control early metazoan development. Length = 768 |
| >gnl|CDD|130689 TIGR01628, PABP-1234, polyadenylate binding protein, human types 1, 2, 3, 4 family | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 3e-05
Identities = 27/132 (20%), Positives = 38/132 (28%), Gaps = 17/132 (12%)
Query: 518 PLPPGPHPSLLTANQQQGYQQNPPPMPPQQHQGHPQQMPHLAMPPQNMPQLQP----PSH 573
P P Q Y Q P Q G P+ MP P +
Sbjct: 383 RQLPMGSPMGGAMGQPPYYGQGPQQQFNGQPLGWPRMSM---MPTPMGPGGPLRPNGLAP 439
Query: 574 LPMLQHPHISR-----PPPQMPQLGMPS----PMPGSLPTPSSHPMSMPVPVGMQGSMNQ 624
+ ++ P + PP P + P+ P+ LP P S S +
Sbjct: 440 MNAVRAPSRNAQNAAQKPPMQPVMYPPNYQSLPLSQDLPQPQSTA-SQGGQNKKLAQVLA 498
Query: 625 MAPPMQQGHYMG 636
A P Q +G
Sbjct: 499 SATPQMQKQVLG 510
|
These eukaryotic proteins recognize the poly-A of mRNA and consists of four tandem RNA recognition domains at the N-terminus (rrm: pfam00076) followed by a PABP-specific domain (pfam00658) at the C-terminus. The protein is involved in the transport of mRNA's from the nucleus to the cytoplasm. There are four paralogs in Homo sapiens which are expressed in testis (GP:11610605_PABP3 ), platelets (SP:Q13310_PABP4 ), broadly expressed (SP:P11940_PABP1) and of unknown tissue range (SP:Q15097_PABP2). Length = 562 |
| >gnl|CDD|237605 PRK14086, dnaA, chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 3e-05
Identities = 29/189 (15%), Positives = 46/189 (24%), Gaps = 27/189 (14%)
Query: 456 RMPGNFPLPEGPTTPGPFAPGLTRNEGTIPGVGVA----MPLSIPSFDSSAQ-------- 503
PE P G G+ +P + P++ + Q
Sbjct: 100 PHARRTSEPELPRPGRRPYEGYGGPRADDRPPGLPRQDQLPTARPAYPAYQQRPEPGAWP 159
Query: 504 ------GEQKQPLSMPLGAPPLPPG---PHPSLLTANQQQGYQQNPPPMPPQQHQGHPQQ 554
G Q+Q L P AP P P G + H
Sbjct: 160 RAADDYGWQQQRLGFPPRAPYASPASYAPEQERDREPYDAGRPEYDQRRRDYDHPRPDWD 219
Query: 555 MPHLAMPPQNMPQLQPPSHLPMLQHPHISRPPPQMPQLGMPSPMPGSLPTPSSHPMSMPV 614
P + P+ P + PP+ + P + ++ P P
Sbjct: 220 RPR--RDRTDRPEPPPGAGHV----HRGGPGPPERDDAPVVPIRPSAPGPLAAQPAPAPG 273
Query: 615 PVGMQGSMN 623
P +N
Sbjct: 274 PGEPTARLN 282
|
Length = 617 |
| >gnl|CDD|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421) | Back alignment and domain information |
|---|
Score = 46.1 bits (109), Expect = 4e-05
Identities = 52/237 (21%), Positives = 61/237 (25%), Gaps = 23/237 (9%)
Query: 496 PSFDSSAQGEQKQPLSMPLGAPPLPPGPHPSLLTANQQQGYQQNPPPMPPQQHQGHPQQM 555
P + + LPP P P +QQQ Q P P Q Q
Sbjct: 50 PPAPEQVAKHELADAPLQQVNAALPPAPAPQSPQPDQQQQSQAPPSHQYPSQLPPQQVQS 109
Query: 556 PHLAMPPQNMPQLQPPSHL-----------------PMLQHPHISRPPPQMPQLGMPSPM 598
PQ P PPS + Q PP Q P P
Sbjct: 110 VPQQPTPQQEPYYPPPSQPQPPPAQQPQAQQPQPPPQVPQQQQYQSPPQQPQYQQNPPPQ 169
Query: 599 PGSLPTPSS-HPMSMPVPVGMQGSMNQMAPPMQ-QGHYMGMNPMHSGGGAPPQVGGFPNG 656
S P S +P P + M Q Y G P G P
Sbjct: 170 AQSAPQVSGLYPEESPYQPQSYPPNEPLPSSMAMQPPYSGAPPSQQFYGPPQP----SPY 225
Query: 657 MQGPPNSSGPQMYPQGGAFNRPQGQMPMMPGYNPFQSGNQSGMAPPPPPGPPPHGQS 713
M G P +P G QGQ P GN +A P G +
Sbjct: 226 MYGGPGGRPNSGFPSGQQPPPSQGQEGYGYSGPPPSKGNHGSVASYAPQGSSQSYST 282
|
This family represents a conserved region approximately 350 residues long within a number of plant proteins of unknown function. Length = 357 |
| >gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 1e-04
Identities = 30/191 (15%), Positives = 43/191 (22%), Gaps = 22/191 (11%)
Query: 516 APPLPPGPHPSLLTANQQQGYQQNPPPMPPQQHQGHPQQMPHLAMPPQNMPQLQPPSHLP 575
P P P L Q P QQ P P P P
Sbjct: 54 QAPPPVAQLPQPLPQPPPTQALQ-ALPAGDQQQHNTPTGSPAANPPATFALPAGPAG--- 109
Query: 576 MLQHPHISRPPPQMPQLGMPSPMPGSLPTPSSHPMSMPVPVGMQGSMNQMAPPMQQGHYM 635
P I P Q+ + +P + P + Q A Q Y
Sbjct: 110 ----PTIQTEPGQLYPVQVPVMVTQ-----------NPANSPLDQPAQQRALQQLQQRYG 154
Query: 636 GMNPMHSGGGAPPQVGGFPNGMQGPPNSSGPQMYPQGGAFNRPQGQMPMMPGYNPFQ--- 692
+ +Q PN P G + + + + +
Sbjct: 155 APASGQLPSQQQSAQKNDESQLQQQPNGETPPQQTDGAGDDESEALVRLREADGTLEQRI 214
Query: 693 SGNQSGMAPPP 703
G + G A
Sbjct: 215 KGAEGGGAMKV 225
|
Transcription initiation factor IIA (TFIIA) is a heterotrimer, the three subunits being known as alpha, beta, and gamma, in order of molecular weight. The N and C-terminal domains of the gamma subunit are represented in pfam02268 and pfam02751, respectively. This family represents the precursor that yields both the alpha and beta subunits. The TFIIA heterotrimer is an essential general transcription initiation factor for the expression of genes transcribed by RNA polymerase II. Together with TFIID, TFIIA binds to the promoter region; this is the first step in the formation of a pre-initiation complex (PIC). Binding of the rest of the transcription machinery follows this step. After initiation, the PIC does not completely dissociate from the promoter. Some components, including TFIIA, remain attached and re-initiate a subsequent round of transcription. Length = 332 |
| >gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional | Back alignment and domain information |
|---|
Score = 44.5 bits (105), Expect = 2e-04
Identities = 41/214 (19%), Positives = 55/214 (25%), Gaps = 20/214 (9%)
Query: 462 PLPEGPTTPGPFAPGLTRNEGTIPGVGVAMPLSIPSFDSSAQGEQKQPLSMPLGAPPLPP 521
PTT GP AP P G L+ P+ S ++ + P PP
Sbjct: 2756 RPARPPTTAGPPAPAPPA----APAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAV 2811
Query: 522 GPHPSLLTANQQQGYQQNPPPMPPQQHQGHPQQMPHLAMPP-----------QNMPQLQP 570
+ L PP P P ++P + P P
Sbjct: 2812 LAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSP 2871
Query: 571 PSHLPMLQHPHISR-----PPPQMPQLGMPSPMPGSLPTPSSHPMSMPVPVGMQGSMNQM 625
+ P + R +P P P P + P P P Q
Sbjct: 2872 AAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQP 2931
Query: 626 APPMQQGHYMGMNPMHSGGGAPPQVGGFPNGMQG 659
PP + P GA G P G
Sbjct: 2932 PPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLG 2965
|
Length = 3151 |
| >gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal | Back alignment and domain information |
|---|
Score = 44.6 bits (105), Expect = 2e-04
Identities = 54/265 (20%), Positives = 70/265 (26%), Gaps = 29/265 (10%)
Query: 440 MGQNQGYGEQNAVFAGRMPGNFPLPEGPTTPGPFAPGLTRNEGTIPGVGVAMPLSIPSFD 499
M Q G Q V + P P + + P + G P+ P
Sbjct: 261 MQPQQMQGGQMQVPMQQQP---PQQQPQQSQLGMLPNQMQQMPGGGQGGPGQPMGPPPQR 317
Query: 500 SSAQGEQKQPLSMPLGAPPLPPGPHPSLLTANQQQGYQQNPPPMPPQQHQGHPQQMPHLA 559
A + Q + + + L QQ QQ H QQM
Sbjct: 318 PGAVPQGGQAVQQGVMSAGQQQLKQMKLRNMRGQQQTQQQQQQQGGNHPAAHQQQMNQQV 377
Query: 560 MPPQNM---PQLQPPSHLPMLQHPHISRPPPQMPQLGMPSPMPGSLPTPSSHPMSMPVPV 616
M L + L + + P M M SP P + P P
Sbjct: 378 GQGGQMVALGYLNIQGNQGGLGANPMQQGQPGM----MSSPSPVPQVQTNQSMPQPPQP- 432
Query: 617 GMQGSMNQMAPPMQQGHYMGMNPMHSGGGAPPQVGGFPNGMQGPPNSSGPQMYPQGGAFN 676
S+ P Q SGG P P S PQM Q A
Sbjct: 433 ----SVPSPGGPGSQP-----PQSVSGGMIPSPPALMP--------SPSPQMS-QSPASQ 474
Query: 677 RPQGQMPMMPGYNPFQSGNQSGMAP 701
R Q + PG G S +P
Sbjct: 475 RTIQQDMVSPGGPLNTPGQSSVNSP 499
|
The approx. 70 residue Med15 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, Med15 is a critical transducer of gene activation signals that control early metazoan development. Length = 768 |
| >gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 2e-04
Identities = 38/184 (20%), Positives = 45/184 (24%), Gaps = 8/184 (4%)
Query: 440 MGQNQGYGEQNAVFAGRMPGNFPLPEGPTTPGPFAPGLTRNEGTIPGV--GVAMPLSIPS 497
+ + V AG + P PGP + P P S
Sbjct: 43 LVSDSAELAAVTVVAGAAACDRFEPPTGPPPGPGTEAPANESRSTPTWSLSTLAPASPAR 102
Query: 498 FDSSAQGEQKQPLSMPLGAPPLPPGP-HPSLLTANQQQGYQQNPPP--MPPQQHQGHPQQ 554
S P P PP P P L+ + PPP PP
Sbjct: 103 EGSPTPPGPSSPDPPPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAV 162
Query: 555 MPHLAMPPQNMPQLQ-PPSHLPMLQHPHISRPPPQMPQLGMPSPMPGSLPTPSSHPMSMP 613
A Q L P P PP SP P +P S S P
Sbjct: 163 ASDAASSRQAALPLSSPEETARAPSSP--PAEPPPSTPPAAASPRPPRRSSPISASASSP 220
Query: 614 VPVG 617
P
Sbjct: 221 APAP 224
|
Length = 1352 |
| >gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 3e-04
Identities = 30/195 (15%), Positives = 41/195 (21%), Gaps = 21/195 (10%)
Query: 500 SSAQGEQKQPLSMPLGAPPLPPGPHPSLLTANQQQGYQQNPPPMPPQQHQGHP--QQMPH 557
S L PL PP QQ P P P P
Sbjct: 52 SPQAPPPVAQLPQPLPQPPPTQALQALPAGDQQQHNTPTGSPAANPPATFALPAGPAGPT 111
Query: 558 LAMPPQNMPQLQPPSHLPM------LQHPHISRPPPQMPQLGMPSPMPGSLPTPSSHPMS 611
+ P + +Q P + L P R Q+ Q P S PS +
Sbjct: 112 IQTEPGQLYPVQVPVMVTQNPANSPLDQPAQQRALQQLQQ---RYGAPASGQLPSQQQSA 168
Query: 612 MPVPVGMQGSMNQMAPPMQQGHYMGMNPMHSGGGAPPQVGGFPNGMQGPPNSSGPQMYPQ 671
+ + Q G + G +
Sbjct: 169 QKND---ESQLQQQPNGETP-----PQQTDGAGDDESEALVRLREADGTLEQRIKGA--E 218
Query: 672 GGAFNRPQGQMPMMP 686
GG + Q
Sbjct: 219 GGGAMKVLKQPKKQA 233
|
Transcription initiation factor IIA (TFIIA) is a heterotrimer, the three subunits being known as alpha, beta, and gamma, in order of molecular weight. The N and C-terminal domains of the gamma subunit are represented in pfam02268 and pfam02751, respectively. This family represents the precursor that yields both the alpha and beta subunits. The TFIIA heterotrimer is an essential general transcription initiation factor for the expression of genes transcribed by RNA polymerase II. Together with TFIID, TFIIA binds to the promoter region; this is the first step in the formation of a pre-initiation complex (PIC). Binding of the rest of the transcription machinery follows this step. After initiation, the PIC does not completely dissociate from the promoter. Some components, including TFIIA, remain attached and re-initiate a subsequent round of transcription. Length = 332 |
| >gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 4e-04
Identities = 30/106 (28%), Positives = 48/106 (45%), Gaps = 7/106 (6%)
Query: 245 SCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRE 304
S D V VWD R + + H + S++W+ SLL + KD + + D + G
Sbjct: 143 SAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTI 202
Query: 305 LCSFHGHKNM--VLCVKWNQNGNWVLT--ASKDQI--IKLYDIRAM 344
+ S H + C+ W + + ++T SK Q I L+D R M
Sbjct: 203 VSSVEAHASAKSQRCL-WAKRKDLIITLGCSKSQQRQIMLWDTRKM 247
|
Length = 493 |
| >gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (102), Expect = 4e-04
Identities = 39/134 (29%), Positives = 48/134 (35%), Gaps = 8/134 (5%)
Query: 490 AMPLSIPSFD-SSAQGEQKQPLSMPLGAPPLPPGPHPSLLTANQQQGYQQNPPPMPPQQH 548
A P S+ F+ S + PL P + P P A QQQ Q P P Q+
Sbjct: 719 ANPFSLDDFEFSPMKALLDDGPHEPLFTPIVEPVQQPQQPVAPQQQYQQPQQPVAPQPQY 778
Query: 549 QGHPQQMPHLAMPPQNMPQLQPPSHLPMLQHPHISRPPPQMPQLGMPSPMPGSLPTPSSH 608
Q PQQ +A PQ QP + P Q P P PQ P P P
Sbjct: 779 Q-QPQQ--PVAPQPQYQQPQQPVAPQPQYQQPQ----QPVAPQPQYQQPQQPVAPQPQYQ 831
Query: 609 PMSMPVPVGMQGSM 622
PV Q ++
Sbjct: 832 QPQQPVAPQPQDTL 845
|
Length = 1355 |
| >gnl|CDD|219358 pfam07271, Cytadhesin_P30, Cytadhesin P30/P32 | Back alignment and domain information |
|---|
Score = 42.7 bits (100), Expect = 4e-04
Identities = 53/188 (28%), Positives = 62/188 (32%), Gaps = 40/188 (21%)
Query: 531 NQQQGYQQNPPPMPPQQHQGHPQQMPHLAMPPQNMPQLQPPSHLPMLQHPHISRPPPQMP 590
N+QQ + +P Q P + +A PQ PQ+QP R PQ
Sbjct: 123 NEQQAIEIDPTEEVNTQEPTQPAGVN-VANNPQ--PQVQPQ-----FGPNPQQRINPQRF 174
Query: 591 QLGMPSPMPGSLPTPSSHPMSMPVPVGMQGSMNQMAPPMQQGHYMGMNPMHSGGGAPPQV 650
M M GM+ NQM P H GM P G P
Sbjct: 175 GFPMQPNM------------------GMRPGFNQMPP-----HMPGMPPNQMRPGFNPMP 211
Query: 651 G-----GFPNGMQGPPNSSGPQMYPQGGAFNRP----QGQMPMMPGYNPFQSGNQSGMAP 701
G GF PN + P PQ G FN P M PG+NP Q N
Sbjct: 212 GMPPRPGFNQNPNMMPNMNRPGFRPQPGGFNHPGTPMGPNMQQRPGFNPNQGMNPPPHMA 271
Query: 702 PPPPGPPP 709
P G PP
Sbjct: 272 GPRAGFPP 279
|
This family consists of several Mycoplasma species specific Cytadhesin P32 and P30 proteins. P30 has been found to be membrane associated and localised on the tip organelle. It is thought that it is important in cytadherence and virulence. Length = 279 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 37.7 bits (88), Expect = 5e-04
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 181 ILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYW 213
L+ H + S+ +S + N + SG D G ++ W
Sbjct: 6 TLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVW 38
|
Length = 39 |
| >gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 7e-04
Identities = 22/108 (20%), Positives = 30/108 (27%), Gaps = 17/108 (15%)
Query: 499 DSSAQGEQKQPLSMPLGAPPLPPGPHPSLLTANQQQGYQQNPPPMPPQ-----QHQGHPQ 553
D+S KQ + P P PS A Q + P Q G P
Sbjct: 368 DASGGRGPKQHIKPVFTQPA--AAPQPSAAAAASPSPSQSSAAAQPSAPQSATQPAGTPP 425
Query: 554 QMPHL------AMPPQNMPQLQPPSHLPMLQHPHISRPPPQMPQLGMP 595
+ PP PQ P+ + P ++ LG
Sbjct: 426 TVSVDPPAAVPVNPPSTAPQAVRPAQFKEEKKI----PVSKVSSLGPS 469
|
Length = 614 |
| >gnl|CDD|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421) | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 9e-04
Identities = 38/174 (21%), Positives = 52/174 (29%), Gaps = 8/174 (4%)
Query: 508 QPLSMPLGAPPLPPGPHPSLLTANQQQGYQQNPPPMPPQQHQGHPQQMPHLAMPPQNMPQ 567
QP + PP P + QQ YQQNPPP Q PQ+ P
Sbjct: 135 QPQAQQPQPPPQVP-QQQQYQSPPQQPQYQQNPPPQAQSAPQVSGLYPEESPYQPQSYPP 193
Query: 568 LQPPSHLPMLQHPHISRPPPQ------MPQLGMPSPMPGSLPTPSSHPMSMPVPVGMQGS 621
+P +Q P+ PP Q P M PG P P P Q
Sbjct: 194 NEPLPSSMAMQPPYSGAPPSQQFYGPPQPSPYMYGG-PGGRPNSGFPSGQQPPPSQGQEG 252
Query: 622 MNQMAPPMQQGHYMGMNPMHSGGGAPPQVGGFPNGMQGPPNSSGPQMYPQGGAF 675
PP +G++ + G + +P+ M +
Sbjct: 253 YGYSGPPPSKGNHGSVASYAPQGSSQSYSTAYPSLPAATVLPQALPMSSAPMSG 306
|
This family represents a conserved region approximately 350 residues long within a number of plant proteins of unknown function. Length = 357 |
| >gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 0.001
Identities = 26/146 (17%), Positives = 35/146 (23%), Gaps = 10/146 (6%)
Query: 438 FNMGQNQGYGEQNAVFAGRMPGNFPLPEGPTTPGPFAPGLTRN-EGTIPGVGVAMPLSIP 496
Q + +P P P P + PG+ MP P
Sbjct: 201 PGYPQPPQGHPEQVQPQQFLPAPSQAPAQPPLPPQLPQQPPPLQQPQFPGLSQQMP---P 257
Query: 497 SFDSSAQGEQKQPLSMPLGAPPLPPGPHPSLLTANQQQGYQQNPPPMPPQQHQGHPQQMP 556
Q +Q+ P PP Q PPP PQ Q
Sbjct: 258 PPPQPPQQQQQPPQPQAQP-PPQNQPTPH---PGLPQGQNAPLPPPQQPQLLPLVQQPQG 313
Query: 557 HLAMP--PQNMPQLQPPSHLPMLQHP 580
P + + QL + Q
Sbjct: 314 QQRGPQFREQLVQLSQQQREALSQEE 339
|
Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804 |
| >gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 0.001
Identities = 25/174 (14%), Positives = 34/174 (19%), Gaps = 8/174 (4%)
Query: 458 PGNFPLPEGPTTPGPFAPGLTRNEGTIPGVGVAMPLSIPSFDSSAQGEQKQPLSMPLGAP 517
P P P G + T G A P + + + G Q L
Sbjct: 63 PQPLPQPPPTQALQALPAGDQQQHNTPTGSPAANPPATFALPAGPAGPTIQTEPGQLYPV 122
Query: 518 PLPPGPHPSLLTANQQQGYQQNPPPMPPQQHQGHPQQMPHLAMPPQNMPQLQPPSHLPML 577
+P + + Q QQ QQ G P Q Q Q
Sbjct: 123 QVPVMVTQNPANSPLDQPAQQRALQQ-LQQRYGAPAS-------GQLPSQQQSAQKNDES 174
Query: 578 QHPHISRPPPQMPQLGMPSPMPGSLPTPSSHPMSMPVPVGMQGSMNQMAPPMQQ 631
Q Q ++Q
Sbjct: 175 QLQQQPNGETPPQQTDGAGDDESEALVRLREADGTLEQRIKGAEGGGAMKVLKQ 228
|
Transcription initiation factor IIA (TFIIA) is a heterotrimer, the three subunits being known as alpha, beta, and gamma, in order of molecular weight. The N and C-terminal domains of the gamma subunit are represented in pfam02268 and pfam02751, respectively. This family represents the precursor that yields both the alpha and beta subunits. The TFIIA heterotrimer is an essential general transcription initiation factor for the expression of genes transcribed by RNA polymerase II. Together with TFIID, TFIIA binds to the promoter region; this is the first step in the formation of a pre-initiation complex (PIC). Binding of the rest of the transcription machinery follows this step. After initiation, the PIC does not completely dissociate from the promoter. Some components, including TFIIA, remain attached and re-initiate a subsequent round of transcription. Length = 332 |
| >gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.001
Identities = 21/146 (14%), Positives = 28/146 (19%), Gaps = 28/146 (19%)
Query: 585 PPPQMPQLGMPSPMPGSLPTPSSHPMSMPVPVGMQGSMNQMAPPMQQGHYMGMNPMHSGG 644
P P +P P+P PT + + Q G +
Sbjct: 53 PQAPPPVAQLPQPLPQPPPTQALQAL-------------PAGDQQQHNTPTGSPAANPPA 99
Query: 645 GAPPQVGGFPNGMQGPPNSSGPQMYPQGGAFN-------RPQGQMP--------MMPGYN 689
G +Q P P P N +P Q P
Sbjct: 100 TFALPAGPAGPTIQTEPGQLYPVQVPVMVTQNPANSPLDQPAQQRALQQLQQRYGAPASG 159
Query: 690 PFQSGNQSGMAPPPPPGPPPHGQSQQ 715
S QS
Sbjct: 160 QLPSQQQSAQKNDESQLQQQPNGETP 185
|
Transcription initiation factor IIA (TFIIA) is a heterotrimer, the three subunits being known as alpha, beta, and gamma, in order of molecular weight. The N and C-terminal domains of the gamma subunit are represented in pfam02268 and pfam02751, respectively. This family represents the precursor that yields both the alpha and beta subunits. The TFIIA heterotrimer is an essential general transcription initiation factor for the expression of genes transcribed by RNA polymerase II. Together with TFIID, TFIIA binds to the promoter region; this is the first step in the formation of a pre-initiation complex (PIC). Binding of the rest of the transcription machinery follows this step. After initiation, the PIC does not completely dissociate from the promoter. Some components, including TFIIA, remain attached and re-initiate a subsequent round of transcription. Length = 332 |
| >gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional | Back alignment and domain information |
|---|
Score = 41.6 bits (97), Expect = 0.001
Identities = 41/140 (29%), Positives = 51/140 (36%), Gaps = 13/140 (9%)
Query: 463 LPEGPTTPGPFAPGLTRNEGTIPGVGVAMPLSIPSFDSSAQGEQKQPLSMPLGAPPLPPG 522
L +GP P F P + + V P + Q + +QP P P
Sbjct: 736 LDDGPHEP-LFTPIVEPVQQPQQPVAPQQQYQQPQQPVAPQPQYQQPQQ---PVAPQPQY 791
Query: 523 PHPSLLTANQQQGYQQNPPPMPPQQHQGHPQQMPHLAMPPQNMPQLQPPSHLPM--LQHP 580
P A Q Q YQQ P+ PQ PQQ P P PQ QP + P L HP
Sbjct: 792 QQPQQPVAPQPQ-YQQPQQPVAPQPQYQQPQQ-PVAPQPQYQQPQ-QPVAPQPQDTLLHP 848
Query: 581 HISRP----PPQMPQLGMPS 596
+ R P P +PS
Sbjct: 849 LLMRNGDSRPLHKPTTPLPS 868
|
Length = 1355 |
| >gnl|CDD|223065 PHA03378, PHA03378, EBNA-3B; Provisional | Back alignment and domain information |
|---|
Score = 41.6 bits (97), Expect = 0.001
Identities = 37/173 (21%), Positives = 54/173 (31%), Gaps = 25/173 (14%)
Query: 540 PPPMPPQQHQGHPQQMPHLAMPPQNMPQLQPPSHLPMLQHPHISRPPPQMPQLGMPSPMP 599
PP + ++ Q+ H+ P + LP+ P +PPP+ P P P
Sbjct: 654 PPQVEITPYKPTWTQIGHI---PYQPSPTGANTMLPIQWAPGTMQPPPRAPT---PMRPP 707
Query: 600 GSLPTPSSHPMSMPVPVGMQGSMNQMAPPMQQGHYMGMNPMHSGGGAPPQVGGFPNGMQG 659
+ P + P + A P P + G A P P +
Sbjct: 708 AAPPGRAQRPAAATGR----------ARPPAAAPGRARPPAAAPGRARPPAAA-PGRARP 756
Query: 660 PPNSSGPQMYPQ---GGAFNRPQGQMPMMPGYNPFQSGNQSGMAPPPPPGPPP 709
P + G P G +P Q P P P + P PPP P
Sbjct: 757 PAAAPGRARPPAAAPGAPTPQPPPQAPPAPQQRP-----RGAPTPQPPPQAGP 804
|
Length = 991 |
| >gnl|CDD|218191 pfam04652, DUF605, Vta1 like | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.001
Identities = 30/154 (19%), Positives = 42/154 (27%), Gaps = 19/154 (12%)
Query: 476 GLTRNEGTIPGVGVAMPLSIPSF-DSSAQGEQKQPLSMPLGAPP--LPPGPHPSLLTANQ 532
G N G + D+S GE P S PP P P +
Sbjct: 145 GEDPNPGPPLDEEDEDADVATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDP 204
Query: 533 QQGYQQNPPPMPPQQHQGHPQQMPHLAMPPQNMPQLQPPSHLPMLQHPHISRPPPQMPQL 592
+ PP P PP + PS P P P +
Sbjct: 205 SSPSDSSLPPAPS----SFQSD-----TPPPSPESPTNPSPPP-------GPAAPPPPPV 248
Query: 593 GMPSPMPGSLPTPSSHPMSMPVPVGMQGSMNQMA 626
P+ + PTP S + G+ + +A
Sbjct: 249 QQVPPLSTAKPTPPSASATPAPIGGITLDDDAIA 282
|
Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315 |
| >gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional | Back alignment and domain information |
|---|
Score = 41.5 bits (97), Expect = 0.002
Identities = 58/262 (22%), Positives = 74/262 (28%), Gaps = 18/262 (6%)
Query: 455 GRMPGNFPLPEGPTTPGPFAPGLTRNEGTIPGVGVAMPLSIPSFDSSAQGEQKQPLSMPL 514
GR P+ P + P P P SA P +
Sbjct: 2671 GRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQ 2730
Query: 515 GAPPLPPGPHPSLLTANQQQGYQQNPPPMPPQQHQGHPQQMPHLAMPPQNMPQLQPPSHL 574
+P LP P P + A P PP G P P A P P+ +
Sbjct: 2731 ASPALPAAPAPPAVPAGPATPGGPARPARPPTT-AGPPAPAPP-AAPAAGPPRRLTRPAV 2788
Query: 575 PMLQHPHISRPPPQMPQLGMPSPMPGSLPTPSSHPMSMPV-PVGMQGSMNQMAPPMQQGH 633
L S P P P P P + P + P P+ S APP G
Sbjct: 2789 ASLSESRESLPSPWDPA---DPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGP 2845
Query: 634 YMGMNPMHSGGGAPPQVGGFPNGMQGPPNSSGPQMYPQGGAFNRPQGQMPMMPGYNPFQS 693
P+ GG P G + P S + A RP + P
Sbjct: 2846 PPPSLPL--GGSVAP---GGDVRRRPPSRSPAAKP----AAPARPPVRRLARP---AVSR 2893
Query: 694 GNQSGMAPPPPPGPPPHGQSQQ 715
+S PP P PP Q+
Sbjct: 2894 STESFALPPDQPERPPQPQAPP 2915
|
Length = 3151 |
| >gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional | Back alignment and domain information |
|---|
Score = 40.7 bits (95), Expect = 0.002
Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 8/84 (9%)
Query: 350 FRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVE-------IHNVHDNTVW 402
+GH + L ++P E SGS D +I W + H V+ I H +
Sbjct: 70 LKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129
Query: 403 DLAWHPIGY-LLCSGSNDHTTKFW 425
+ W+P+ Y ++CS D W
Sbjct: 130 IIDWNPMNYYIMCSSGFDSFVNIW 153
|
Length = 568 |
| >gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family | Back alignment and domain information |
|---|
Score = 41.2 bits (96), Expect = 0.002
Identities = 59/234 (25%), Positives = 68/234 (29%), Gaps = 16/234 (6%)
Query: 485 PGVGVAMPLSIPSFDSSAQGEQKQPLSMPLGAPPLPPGPH--PSLLTANQQQGYQQNPPP 542
P A P S SA Q+ P PL PP P PH P T Q Q + P
Sbjct: 308 PLPSQAQPHSHTPPSQSALQPQQPPREQPL--PPAPSMPHIKPPPTTPIPQLPNQSHKHP 365
Query: 543 MPPQQHQGHPQQMPHLAMPPQNMPQLQPPSHLPMLQHPHISRPPPQMPQLGMPSPMPGSL 602
Q PQ +L PP P P+H P HP + PQ L P L
Sbjct: 366 PHLQGPSPFPQMPSNLPPPPALKPLSSLPTHHPPSAHPPPLQLMPQSQPLQSVPAQPPVL 425
Query: 603 PTPSSHPMSMPVPVGMQGSMNQMAPPMQQGHYMGMNPMHSGGGAPPQVGGFPNGMQGPPN 662
S P P Q + G PP + P P
Sbjct: 426 TQSQSLPPKASTHPHSGLHSGPPQSPFAQHPFTSGG--LPAIGPPPSL---PTSTPAAPP 480
Query: 663 SSGPQMYPQGGAFNRPQGQMPMMPGYNPFQ-------SGNQSGMAPPPPPGPPP 709
+ P G A G P P Q + PPPP P P
Sbjct: 481 RASSGSQPPGSALPSSGGCAGPGPPLPPIQIKEEPLDEAEEPESPPPPPRSPSP 534
|
Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979 |
| >gnl|CDD|223065 PHA03378, PHA03378, EBNA-3B; Provisional | Back alignment and domain information |
|---|
Score = 41.6 bits (97), Expect = 0.002
Identities = 36/169 (21%), Positives = 44/169 (26%), Gaps = 11/169 (6%)
Query: 517 PPLPPGP-HPSLLTANQQQGYQQNPPPMPPQQHQGHPQQMPHLAMPPQNMPQLQPPSHLP 575
PP P P P + Q P + P A P P P
Sbjct: 697 PPRAPTPMRPPAAPPGRAQRPAAATGRARPPAAAPGRARPPAAAPGRARPPAAAPGRARP 756
Query: 576 MLQHPHISRPPPQMPQLGMPSPMPGSLPTPSSHPMSMPVPVGMQGSMNQMAPPMQQGHYM 635
P +RPP P P P P + P P P P P PP M
Sbjct: 757 PAAAPGRARPPAAAPGAPTPQPPPQAPPAPQQRPRGAPTP---------QPPPQAGPTSM 807
Query: 636 GMNPMHSGGGAPPQVGGFPNGMQGPPNSSGPQM-YPQGGAFNRPQGQMP 683
+ P + G P + G P + P G P
Sbjct: 808 QLMPRAAPGQQGPTKQILRQLLTGGVKRGRPSLKKPAALERQAAAGPTP 856
|
Length = 991 |
| >gnl|CDD|130689 TIGR01628, PABP-1234, polyadenylate binding protein, human types 1, 2, 3, 4 family | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 0.003
Identities = 19/97 (19%), Positives = 26/97 (26%), Gaps = 15/97 (15%)
Query: 618 MQGSMNQMAPPMQQGHYMGMNPMHSGGGAPPQVGGFPNGMQGPPNSSGPQMYPQGGAFNR 677
+Q Q+ P M+Q +PM G P G Q P +P
Sbjct: 371 LQDQFMQLQPRMRQLPMG--SPM-GGAMGQPPYYGQGPQQQFNGQ---PLGWP------- 417
Query: 678 PQGQMPMMPGYNPFQSGNQSGMAPPPPPGPPPHGQSQ 714
M P +G+AP P
Sbjct: 418 --RMSMMPTPMGPGGPLRPNGLAPMNAVRAPSRNAQN 452
|
These eukaryotic proteins recognize the poly-A of mRNA and consists of four tandem RNA recognition domains at the N-terminus (rrm: pfam00076) followed by a PABP-specific domain (pfam00658) at the C-terminus. The protein is involved in the transport of mRNA's from the nucleus to the cytoplasm. There are four paralogs in Homo sapiens which are expressed in testis (GP:11610605_PABP3 ), platelets (SP:Q13310_PABP4 ), broadly expressed (SP:P11940_PABP1) and of unknown tissue range (SP:Q15097_PABP2). Length = 562 |
| >gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional | Back alignment and domain information |
|---|
Score = 40.8 bits (95), Expect = 0.003
Identities = 35/135 (25%), Positives = 43/135 (31%), Gaps = 21/135 (15%)
Query: 509 PLSMPLGAPPLPPGPHPSLLTANQ----QQGYQQNPPPMPPQQHQGHPQQMP-------H 557
P+ P+ P P P Q Q YQQ P+ PQ PQQ
Sbjct: 747 PIVEPVQQPQQPVAPQQQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQ 806
Query: 558 LAMPPQNMPQLQPPSHL----PMLQHPHISRPPPQMPQLGMPSPMPGSLPTPSSHPMSMP 613
P PQ Q P P Q P P L P M P P + P
Sbjct: 807 PQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQDTLLHPLLMRNGDSRPLHKP-TTP 865
Query: 614 VPVGMQGSMNQMAPP 628
+P S++ + PP
Sbjct: 866 LP-----SLDLLTPP 875
|
Length = 1355 |
| >gnl|CDD|107304 cd06309, PBP1_YtfQ_like, Periplasmic binding domain of ABC-type YtfQ-like transport systems | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 0.003
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 160 ITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDN 199
I SQ+G+FT G+ E +L+AH I V++HND
Sbjct: 158 IVASQTGDFTRAKGKEV-MEALLKAHGDDI-DAVYAHNDE 195
|
Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally. Length = 273 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 715 | |||
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 100.0 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 100.0 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 100.0 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 100.0 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 100.0 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 100.0 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 100.0 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 100.0 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 100.0 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 100.0 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 100.0 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 100.0 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 100.0 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 100.0 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 100.0 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 100.0 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 100.0 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 100.0 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 100.0 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 100.0 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 100.0 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 100.0 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 100.0 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 100.0 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 100.0 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 100.0 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 100.0 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.98 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.98 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.98 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.97 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.97 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 99.97 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 99.97 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 99.97 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.97 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.97 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.97 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.97 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.97 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.97 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.97 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.97 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 99.97 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.97 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.97 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.97 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.97 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.97 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.97 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.97 | |
| PTZ00421 | 493 | coronin; Provisional | 99.97 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.96 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.96 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.96 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.96 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.96 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.96 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.96 | |
| PTZ00420 | 568 | coronin; Provisional | 99.96 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.96 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.96 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.96 | |
| PTZ00421 | 493 | coronin; Provisional | 99.96 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.96 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.96 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.96 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.96 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.96 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.96 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.96 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.95 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.95 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.95 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.95 | |
| PTZ00420 | 568 | coronin; Provisional | 99.95 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.95 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.95 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.95 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.94 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.94 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.94 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.94 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.94 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.94 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.94 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.94 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.94 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.94 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.94 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.94 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.94 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.94 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.93 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.93 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.93 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.93 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.93 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.93 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.93 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.93 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.93 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.93 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.92 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.92 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.92 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.92 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.92 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.92 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.92 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.92 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.92 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.92 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.91 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.91 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.91 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.91 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.9 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.9 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.9 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.89 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.89 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.89 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.89 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.89 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.89 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.89 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.89 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.89 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.89 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.88 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.88 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.88 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.88 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.88 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.88 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.87 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.87 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.87 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.86 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.85 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.85 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.85 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.84 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.84 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.83 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.83 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.83 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.83 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.83 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.82 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.82 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.82 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.82 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.82 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.82 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.81 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.81 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.8 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.8 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.8 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.8 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.8 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.79 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.79 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.78 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.78 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.77 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.77 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.77 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.76 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.76 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.76 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.75 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.75 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.74 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.74 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.74 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.74 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.73 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.72 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.72 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.71 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.71 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.7 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.69 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.69 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.68 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.68 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.68 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.67 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.67 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.67 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.67 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.67 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.67 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.66 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.63 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.63 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.63 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.63 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.63 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.63 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.62 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.62 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.61 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.61 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.61 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.6 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.59 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.58 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 99.56 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 99.56 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.55 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.55 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.54 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.53 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.53 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 99.53 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.52 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.52 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.51 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 99.5 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.5 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 99.49 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.49 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.48 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.48 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.48 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.47 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.47 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 99.46 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.45 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.45 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.45 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 99.44 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 99.44 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 99.42 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.42 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 99.41 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 99.41 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 99.4 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 99.37 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 99.35 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 99.33 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.31 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 99.3 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 99.3 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 99.3 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 99.3 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 99.29 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.29 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.29 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.28 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 99.27 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 99.25 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 99.24 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.24 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 99.23 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 99.22 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 99.21 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.2 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 99.19 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 99.19 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 99.18 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 99.17 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 99.17 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 99.16 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 99.14 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 99.12 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 99.11 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 99.1 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 99.08 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 99.06 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 99.06 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 99.05 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 99.04 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 99.04 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 99.01 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 99.0 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.99 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.98 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 98.97 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 98.96 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.94 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.9 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.89 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 98.86 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.85 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 98.84 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 98.83 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.83 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 98.83 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 98.8 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 98.79 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 98.79 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 98.78 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 98.75 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 98.73 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 98.71 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 98.69 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 98.67 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 98.66 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 98.66 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.64 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.63 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 98.61 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.6 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 98.6 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 98.59 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 98.59 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 98.54 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 98.54 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 98.53 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 98.53 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 98.5 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 98.5 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 98.45 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 98.44 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 98.43 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 98.42 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 98.41 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.4 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 98.4 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 98.34 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 98.34 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 98.33 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 98.32 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 98.3 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 98.27 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 98.24 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 98.22 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 98.21 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 98.21 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.2 | |
| COG1506 | 620 | DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-pept | 98.18 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 98.16 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.15 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 98.15 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 98.15 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 98.14 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 98.12 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 98.06 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 98.04 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 98.03 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 98.02 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 98.02 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 98.0 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 97.99 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 97.96 | |
| PRK10115 | 686 | protease 2; Provisional | 97.9 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 97.89 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 97.82 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 97.8 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 97.79 | |
| PRK10115 | 686 | protease 2; Provisional | 97.76 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 97.75 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 97.71 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 97.7 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 97.69 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 97.66 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 97.62 | |
| COG5276 | 370 | Uncharacterized conserved protein [Function unknow | 97.61 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 97.61 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 97.61 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 97.58 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 97.55 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 97.52 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 97.51 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 97.51 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 97.5 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 97.49 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 97.49 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 97.48 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 97.47 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 97.46 | |
| COG5276 | 370 | Uncharacterized conserved protein [Function unknow | 97.44 | |
| COG1520 | 370 | FOG: WD40-like repeat [Function unknown] | 97.43 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 97.38 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 97.37 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 97.37 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 97.33 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 97.24 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 97.23 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 97.23 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 97.19 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 97.15 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 97.15 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 97.14 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 97.14 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 97.14 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 97.11 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 97.06 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 97.06 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 97.04 | |
| COG1520 | 370 | FOG: WD40-like repeat [Function unknown] | 96.98 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 96.97 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 96.96 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 96.91 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 96.87 | |
| KOG1898 | 1205 | consensus Splicing factor 3b, subunit 3 [RNA proce | 96.85 | |
| smart00036 | 302 | CNH Domain found in NIK1-like kinases, mouse citro | 96.83 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 96.81 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 96.77 | |
| COG3292 | 671 | Predicted periplasmic ligand-binding sensor domain | 96.75 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 96.73 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 96.73 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 96.73 | |
| PRK05560 | 805 | DNA gyrase subunit A; Validated | 96.7 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 96.7 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 96.68 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 96.65 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 96.64 | |
| COG1506 | 620 | DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-pept | 96.6 | |
| PLN02153 | 341 | epithiospecifier protein | 96.55 | |
| PF10433 | 504 | MMS1_N: Mono-functional DNA-alkylating methyl meth | 96.5 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 96.47 | |
| PLN02153 | 341 | epithiospecifier protein | 96.44 | |
| TIGR01063 | 800 | gyrA DNA gyrase, A subunit. This model describes t | 96.31 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 96.26 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 96.26 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 96.26 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 96.25 | |
| PF10214 | 765 | Rrn6: RNA polymerase I-specific transcription-init | 96.24 | |
| KOG2377 | 657 | consensus Uncharacterized conserved protein [Funct | 96.23 | |
| PF10214 | 765 | Rrn6: RNA polymerase I-specific transcription-init | 96.15 | |
| TIGR03548 | 323 | mutarot_permut cyclically-permuted mutatrotase fam | 96.09 | |
| PRK05560 | 805 | DNA gyrase subunit A; Validated | 96.06 | |
| TIGR03548 | 323 | mutarot_permut cyclically-permuted mutatrotase fam | 96.0 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 95.97 | |
| KOG1898 | 1205 | consensus Splicing factor 3b, subunit 3 [RNA proce | 95.96 | |
| TIGR03547 | 346 | muta_rot_YjhT mutatrotase, YjhT family. Members of | 95.94 | |
| TIGR01063 | 800 | gyrA DNA gyrase, A subunit. This model describes t | 95.92 | |
| PRK14131 | 376 | N-acetylneuraminic acid mutarotase; Provisional | 95.91 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 95.9 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 95.88 | |
| COG5290 | 1243 | IkappaB kinase complex, IKAP component [Transcript | 95.88 | |
| PF05935 | 477 | Arylsulfotrans: Arylsulfotransferase (ASST); Inter | 95.86 | |
| KOG1984 | 1007 | consensus Vesicle coat complex COPII, subunit SFB3 | 95.84 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 95.79 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 95.76 | |
| PLN02193 | 470 | nitrile-specifier protein | 95.74 | |
| PF10395 | 670 | Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an | 95.73 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 95.7 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 95.62 | |
| PF10433 | 504 | MMS1_N: Mono-functional DNA-alkylating methyl meth | 95.49 | |
| PF03022 | 287 | MRJP: Major royal jelly protein; InterPro: IPR0035 | 95.39 | |
| PF02333 | 381 | Phytase: Phytase; InterPro: IPR003431 Phytase (3.1 | 95.37 | |
| PRK14131 | 376 | N-acetylneuraminic acid mutarotase; Provisional | 95.36 | |
| PF05935 | 477 | Arylsulfotrans: Arylsulfotransferase (ASST); Inter | 95.3 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 95.29 | |
| TIGR03547 | 346 | muta_rot_YjhT mutatrotase, YjhT family. Members of | 95.29 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 95.19 | |
| KOG2100 | 755 | consensus Dipeptidyl aminopeptidase [Posttranslati | 95.19 | |
| PF03022 | 287 | MRJP: Major royal jelly protein; InterPro: IPR0035 | 95.19 | |
| PF02333 | 381 | Phytase: Phytase; InterPro: IPR003431 Phytase (3.1 | 95.12 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 95.08 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 95.06 | |
| KOG4849 | 498 | consensus mRNA cleavage factor I subunit/CPSF subu | 95.05 | |
| PF10395 | 670 | Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an | 95.03 | |
| PLN02193 | 470 | nitrile-specifier protein | 95.01 | |
| PRK13979 | 957 | DNA topoisomerase IV subunit A; Provisional | 94.93 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 94.86 | |
| KOG1924 | 1102 | consensus RhoA GTPase effector DIA/Diaphanous [Sig | 94.86 | |
| KOG2247 | 615 | consensus WD40 repeat-containing protein [General | 94.85 | |
| KOG1900 | 1311 | consensus Nuclear pore complex, Nup155 component ( | 94.8 | |
| KOG2247 | 615 | consensus WD40 repeat-containing protein [General | 94.71 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 94.7 | |
| KOG1983 | 993 | consensus Tomosyn and related SNARE-interacting pr | 94.63 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 94.6 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 94.59 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 94.59 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 94.58 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 94.54 | |
| PRK13979 | 957 | DNA topoisomerase IV subunit A; Provisional | 94.53 | |
| KOG1900 | 1311 | consensus Nuclear pore complex, Nup155 component ( | 94.41 | |
| KOG2377 | 657 | consensus Uncharacterized conserved protein [Funct | 94.39 | |
| PF08801 | 422 | Nucleoporin_N: Nup133 N terminal like; InterPro: I | 94.23 | |
| smart00036 | 302 | CNH Domain found in NIK1-like kinases, mouse citro | 94.22 | |
| KOG1896 | 1366 | consensus mRNA cleavage and polyadenylation factor | 94.21 |
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-54 Score=438.03 Aligned_cols=373 Identities=60% Similarity=1.085 Sum_probs=356.4
Q ss_pred hhhhcccccccceEeeehhhheeeEEEEEeccCCCccccccCchhhhcCccceeecCCCCCceeeeEEEEecCCCCccEE
Q 005096 69 AAKRMRKLTQRRAVDYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSFAAKFVHTSLNKNRCSIN 148 (715)
Q Consensus 69 ~~~r~~~~~~~~~~~~~~~~~~~~~irvW~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~ 148 (715)
+++|++|...|+.+||.+.+.++.+.|.|+.+ ++...++....+..++++...+..+....+..+|++++.++-++.|.
T Consensus 22 ~g~rlrk~~~Rr~VDy~s~v~~~~~nR~~~~~-~d~~~~~p~~~~~~~~~pp~~~~~dp~~~~~tKf~h~s~NKvkc~V~ 100 (464)
T KOG0284|consen 22 DGKRLRKPVARRTVDYNSPVCNYRQNRRWQYD-RDRALLQPDSSYIIDLVPPSLYLDDPSSAFTTKFVHTSSNKVKCPVN 100 (464)
T ss_pred cCccccchhhhcccCCCcHHHHHHHHHhhccc-ccccccCCCchhhhcccChhhccCCcccccccceEecccccccccee
Confidence 46999999999999999999999999999998 88899999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeecCCC
Q 005096 149 RVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHK 228 (715)
Q Consensus 149 ~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~ 228 (715)
.|.|.|+|+.|++|+..|.+.||+..+.....++..|+..|+++.|+.++.++++|+.+|.|++|+.+...++.....|.
T Consensus 101 ~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~~ahh~ 180 (464)
T KOG0284|consen 101 VVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKIIQAHHA 180 (464)
T ss_pred eEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHHhhHhhh
Confidence 99999999999999999999999999888899999999999999999999999999999999999998887777666677
Q ss_pred CCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEe
Q 005096 229 ESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSF 308 (715)
Q Consensus 229 ~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~ 308 (715)
..|++++|++++..|++|++||+|+|||....+..+.+.+|...|++++|+|...+|+++++|..|++||.++++++.++
T Consensus 181 eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tl 260 (464)
T KOG0284|consen 181 EAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATL 260 (464)
T ss_pred hhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCC
Q 005096 309 HGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHET 388 (715)
Q Consensus 309 ~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~ 388 (715)
..|+..|..+.|++++++|++++.|..+++||+++.+.+.++++|+..|+++.|+|.+..+|++|+.||.|..|.+...+
T Consensus 261 h~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~ 340 (464)
T KOG0284|consen 261 HGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEE 340 (464)
T ss_pred hhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEeccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred ceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCCCCCcccccccccC
Q 005096 389 PQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGDTARDKFNMGQ 442 (715)
Q Consensus 389 ~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~~~~~~~~~~~~ 442 (715)
.+..+..+|+..|++++|+|-|.+|++|+.|.++++|..+++++..........
T Consensus 341 p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~rp~d~~~~~~~~~~ 394 (464)
T KOG0284|consen 341 PLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRNRPGDKNADDVGLSN 394 (464)
T ss_pred cccCCCcccccceeeeeccccceeEeecCCCcceeeeccCCCCCcccccccccc
Confidence 888888999999999999999999999999999999999999988776654433
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-46 Score=377.03 Aligned_cols=328 Identities=26% Similarity=0.466 Sum_probs=292.5
Q ss_pred CCCCCcccchhhhhcccccccceEeeehhhheeeEEEEEeccCCCccccccCchhhhcCccceeecCCCCCceeeeEEEE
Q 005096 59 PPYDAHGDSFAAKRMRKLTQRRAVDYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSFAAKFVHT 138 (715)
Q Consensus 59 ~~~~~h~~~~~~~r~~~~~~~~~~~~~~~~~~~~~irvW~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 138 (715)
..+.+|...+...+|.. +..++.+...+.+.|+||.+.+.. ..
T Consensus 109 sS~~GH~e~Vl~~~fsp-----~g~~l~tGsGD~TvR~WD~~TeTp--------------------------------~~ 151 (480)
T KOG0271|consen 109 SSIAGHGEAVLSVQFSP-----TGSRLVTGSGDTTVRLWDLDTETP--------------------------------LF 151 (480)
T ss_pred cccCCCCCcEEEEEecC-----CCceEEecCCCceEEeeccCCCCc--------------------------------ce
Confidence 34667777766655543 455677888899999999875441 23
Q ss_pred ecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce-EEEEeccCCCEEEEEEcC-----CCCEEEEEeCCCcEEE
Q 005096 139 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNF-EMILQAHDHAIRSMVWSH-----NDNWMVSGDDGGAIKY 212 (715)
Q Consensus 139 ~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~-~~~l~~h~~~V~~l~~sp-----dg~~L~tgs~dg~I~i 212 (715)
+.++|+..|.||+|+|||+.||+|+.||+|++||-++++. .+.+.+|...|++++|.| ..++|++++.||.|+|
T Consensus 152 t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrI 231 (480)
T KOG0271|consen 152 TCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRI 231 (480)
T ss_pred eecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEE
Confidence 6789999999999999999999999999999999888765 567899999999999975 5679999999999999
Q ss_pred EeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCC-----------
Q 005096 213 WQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPT----------- 281 (715)
Q Consensus 213 wd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spd----------- 281 (715)
||+..+.++..+.+|...|+|++|--+ .+|++++.|++|++|+..++...+.+++|...|+.|+++.|
T Consensus 232 Wd~~~~~~~~~lsgHT~~VTCvrwGG~-gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t 310 (480)
T KOG0271|consen 232 WDTKLGTCVRTLSGHTASVTCVRWGGE-GLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHT 310 (480)
T ss_pred EEccCceEEEEeccCccceEEEEEcCC-ceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccc
Confidence 999999999999999999999999744 58999999999999999999999999999999999998732
Q ss_pred -------------------------CCEEEEEeCCCcEEEEECC-CCceeEEeccCCCceEEEEEcCCCCEEEEEECCCe
Q 005096 282 -------------------------KSLLVSGGKDSLVKLWDAK-SGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQI 335 (715)
Q Consensus 282 -------------------------g~~L~sgs~Dg~I~iwDl~-s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~ 335 (715)
+..|++|++|.++.+|+-. +.+++.++.+|...|+.+.||||++|||+++.|+.
T Consensus 311 ~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkS 390 (480)
T KOG0271|consen 311 GRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKS 390 (480)
T ss_pred cccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccc
Confidence 2359999999999999865 45588889999999999999999999999999999
Q ss_pred EEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEE
Q 005096 336 IKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCS 415 (715)
Q Consensus 336 I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~s 415 (715)
|++||.++|+.+.+|++|-..|+.++|+. +.++|++|+.|.++++||+++.+....+. +|.+.|.++.|++||..+++
T Consensus 391 VkLW~g~tGk~lasfRGHv~~VYqvawsa-DsRLlVS~SkDsTLKvw~V~tkKl~~DLp-Gh~DEVf~vDwspDG~rV~s 468 (480)
T KOG0271|consen 391 VKLWDGRTGKFLASFRGHVAAVYQVAWSA-DSRLLVSGSKDSTLKVWDVRTKKLKQDLP-GHADEVFAVDWSPDGQRVAS 468 (480)
T ss_pred eeeeeCCCcchhhhhhhccceeEEEEecc-CccEEEEcCCCceEEEEEeeeeeecccCC-CCCceEEEEEecCCCceeec
Confidence 99999999999999999999999999998 89999999999999999998877655544 69999999999999999999
Q ss_pred EECCCeEEEEe
Q 005096 416 GSNDHTTKFWC 426 (715)
Q Consensus 416 gs~Dg~I~iWd 426 (715)
|+.|..++||.
T Consensus 469 ggkdkv~~lw~ 479 (480)
T KOG0271|consen 469 GGKDKVLRLWR 479 (480)
T ss_pred CCCceEEEeec
Confidence 99999999995
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-45 Score=364.76 Aligned_cols=323 Identities=24% Similarity=0.401 Sum_probs=287.7
Q ss_pred EEEecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005096 136 VHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQN 215 (715)
Q Consensus 136 ~~~~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~ 215 (715)
+..++.||.+.|.|+.|+|+|+.|++|+.|.++++||+.+.....+.++|...|.||+|+||++.||+|+.||+|++||-
T Consensus 107 CssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdp 186 (480)
T KOG0271|consen 107 CSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDP 186 (480)
T ss_pred eccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecC
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCc-eeeeecCCCCCeEEEEEec-----CCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEe
Q 005096 216 NMNN-VKANKSAHKESVRDLSFCR-----TDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGG 289 (715)
Q Consensus 216 ~~~~-~~~~~~~h~~~I~~l~~sp-----d~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs 289 (715)
++++ ....+.+|+..|++|+|.| ..++|++++.||+|+|||+..+.++..+.+|...|+||.|--+ .+|++++
T Consensus 187 ktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~-gliySgS 265 (480)
T KOG0271|consen 187 KTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGE-GLIYSGS 265 (480)
T ss_pred CCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCC-ceEEecC
Confidence 8875 4567899999999999975 5678999999999999999999999999999999999999743 4899999
Q ss_pred CCCcEEEEECCCCceeEEeccCCCceEEEEEcC-----------CC-------------------------CEEEEEECC
Q 005096 290 KDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQ-----------NG-------------------------NWVLTASKD 333 (715)
Q Consensus 290 ~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~sp-----------dg-------------------------~~Lasgs~d 333 (715)
.|++|++|+...|++++++++|..+|+.|+++. .+ ..|++|+.|
T Consensus 266 ~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd 345 (480)
T KOG0271|consen 266 QDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDD 345 (480)
T ss_pred CCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCC
Confidence 999999999999999999999999999999872 23 349999999
Q ss_pred CeEEEEECCC-CeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCE
Q 005096 334 QIIKLYDIRA-MKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYL 412 (715)
Q Consensus 334 g~I~iwDl~t-~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 412 (715)
.++.+|+-.. .+.+....+|...|+.+.|+| ++++||+++.|..|++||-++++.+.. +.+|-..|+.++|+.|.++
T Consensus 346 ~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSP-d~r~IASaSFDkSVkLW~g~tGk~las-fRGHv~~VYqvawsaDsRL 423 (480)
T KOG0271|consen 346 FTLFLWNPFKSKKPITRMTGHQALVNHVSFSP-DGRYIASASFDKSVKLWDGRTGKFLAS-FRGHVAAVYQVAWSADSRL 423 (480)
T ss_pred ceEEEecccccccchhhhhchhhheeeEEECC-CccEEEEeecccceeeeeCCCcchhhh-hhhccceeEEEEeccCccE
Confidence 9999999754 447888999999999999999 999999999999999999999876644 4579999999999999999
Q ss_pred EEEEECCCeEEEEecCCCCCcccccccccCCccccceeeEEeecCCCCccCCCCCC
Q 005096 413 LCSGSNDHTTKFWCRNRPGDTARDKFNMGQNQGYGEQNAVFAGRMPGNFPLPEGPT 468 (715)
Q Consensus 413 L~sgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 468 (715)
|++|+.|.++++|++.+.+.. ...-|+.++...++++.+|...+..+..
T Consensus 424 lVS~SkDsTLKvw~V~tkKl~-------~DLpGh~DEVf~vDwspDG~rV~sggkd 472 (480)
T KOG0271|consen 424 LVSGSKDSTLKVWDVRTKKLK-------QDLPGHADEVFAVDWSPDGQRVASGGKD 472 (480)
T ss_pred EEEcCCCceEEEEEeeeeeec-------ccCCCCCceEEEEEecCCCceeecCCCc
Confidence 999999999999999642221 2235677888888998877766555443
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-44 Score=366.92 Aligned_cols=285 Identities=25% Similarity=0.417 Sum_probs=273.7
Q ss_pred CCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCC--CCEEEEEeCCCcEEEEeCCCC
Q 005096 141 NKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHN--DNWMVSGDDGGAIKYWQNNMN 218 (715)
Q Consensus 141 ~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spd--g~~L~tgs~dg~I~iwd~~~~ 218 (715)
.+-+.+|..+.||.|++.||||+.+|.++||+..+...+.++.+|...|.++.|+|. +..|++|+.||+|++|+++..
T Consensus 172 ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e 251 (459)
T KOG0272|consen 172 VGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQE 251 (459)
T ss_pred ccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCC
Confidence 467789999999999999999999999999999999999999999999999999997 568999999999999999999
Q ss_pred ceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005096 219 NVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWD 298 (715)
Q Consensus 219 ~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwD 298 (715)
..+..+.+|...|..++|+|+|++|++++.|.+-++||++++.++....+|...|.+|+|.+||.++++|+.|..-+|||
T Consensus 252 ~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWD 331 (459)
T KOG0272|consen 252 TPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWD 331 (459)
T ss_pred cchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCc
Q 005096 299 AKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGS 378 (715)
Q Consensus 299 l~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~ 378 (715)
+++++++..+.+|...|.+|+|+|+|..||+|+.|++++|||++..+++..+.+|.+-|+.|+|+|..+.+|+|++.|++
T Consensus 332 lRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t 411 (459)
T KOG0272|consen 332 LRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNT 411 (459)
T ss_pred cccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999989999999999999
Q ss_pred EEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEe
Q 005096 379 IFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWC 426 (715)
Q Consensus 379 I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWd 426 (715)
++||...+...+ +.+.+|++.|.++++++|+.+|++++.|.+|++|.
T Consensus 412 ~kiWs~~~~~~~-ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 412 VKIWSTRTWSPL-KSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred eeeecCCCcccc-hhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 999998776554 55568999999999999999999999999999995
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-41 Score=328.26 Aligned_cols=287 Identities=25% Similarity=0.402 Sum_probs=268.3
Q ss_pred EEecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 005096 137 HTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNN 216 (715)
Q Consensus 137 ~~~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~ 216 (715)
.+.|++|.++|.++.|+.|.++|++++.||.+.|||.-+.+.+..+......|..++|+|.++++++|+-|+...||++.
T Consensus 48 rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls 127 (343)
T KOG0286|consen 48 RRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLS 127 (343)
T ss_pred EEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecc
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CC------ceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcC-CCCEEEEEe
Q 005096 217 MN------NVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHP-TKSLLVSGG 289 (715)
Q Consensus 217 ~~------~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~sp-dg~~L~sgs 289 (715)
+. .+.+.+.+|...+.|+.|.. +..|++++.|.++.+||+++++.+..|.+|.+.|.+++++| +++.+++|+
T Consensus 128 ~~d~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~ 206 (343)
T KOG0286|consen 128 TRDAEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGG 206 (343)
T ss_pred cccccccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecc
Confidence 55 45667889999999999986 56799999999999999999999999999999999999999 999999999
Q ss_pred CCCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeec--CCCCeEEEEEccCCC
Q 005096 290 KDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRG--HRKDVTALAWHPFHE 367 (715)
Q Consensus 290 ~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~--h~~~V~~l~~sp~~~ 367 (715)
.|+..+|||+|.+.++..|.+|...|++|+|.|+|.-|++|+.|+++++||+|....+..+.. ....|++++|+. .+
T Consensus 207 cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~-SG 285 (343)
T KOG0286|consen 207 CDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSK-SG 285 (343)
T ss_pred cccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcc-cc
Confidence 999999999999999999999999999999999999999999999999999999999888873 345799999999 89
Q ss_pred CEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEe
Q 005096 368 EYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWC 426 (715)
Q Consensus 368 ~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWd 426 (715)
++|++|..|.++.+||.-..+. ..++.+|++.|+||..++||.-|++|+.|.+|+||.
T Consensus 286 RlLfagy~d~~c~vWDtlk~e~-vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 286 RLLFAGYDDFTCNVWDTLKGER-VGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred cEEEeeecCCceeEeeccccce-EEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 9999999999999999865554 455668999999999999999999999999999994
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-38 Score=308.25 Aligned_cols=291 Identities=21% Similarity=0.330 Sum_probs=255.3
Q ss_pred EEEEecCCCCccEEEEEEcCC-CCEEEEEeCCCeEEEEeCCC-----CceEEEEeccCCCEEEEEEcCCCCEEEEEeCCC
Q 005096 135 FVHTSLNKNRCSINRVLWTPT-GRRLITGSQSGEFTLWNGQS-----FNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGG 208 (715)
Q Consensus 135 ~~~~~l~~H~~~I~~l~~spd-g~~Latgs~dg~I~Iwd~~~-----~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg 208 (715)
.++.++++|.+.|+.++.... -..|++++.|.+|.+|++.. +...+.+++|+..|..++.++|+++.++++.|+
T Consensus 6 ~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~ 85 (315)
T KOG0279|consen 6 VLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDG 85 (315)
T ss_pred eeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccc
Confidence 456789999999999999987 46788999999999998654 567899999999999999999999999999999
Q ss_pred cEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecc-cCCceEEEEEcCC--CCEE
Q 005096 209 AIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTG-HGWDVKSVDWHPT--KSLL 285 (715)
Q Consensus 209 ~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~-~~~~I~si~~spd--g~~L 285 (715)
++++||+.+++....+.+|...|.+++|++|++.|++|+.|.+|++||+........... +.+.|+|+.|+|+ ..+|
T Consensus 86 ~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~I 165 (315)
T KOG0279|consen 86 TLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPII 165 (315)
T ss_pred eEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEE
Confidence 999999999999999999999999999999999999999999999999866544333333 2789999999998 5699
Q ss_pred EEEeCCCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccC
Q 005096 286 VSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPF 365 (715)
Q Consensus 286 ~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~ 365 (715)
++++.|++|++||+++-+....+.+|...++.+++|+||.++++|+.||.+.+||++.++.+..+. +...|.+++|+|
T Consensus 166 vs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~-a~~~v~sl~fsp- 243 (315)
T KOG0279|consen 166 VSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLE-AFDIVNSLCFSP- 243 (315)
T ss_pred EEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEecc-CCCeEeeEEecC-
Confidence 999999999999999999999999999999999999999999999999999999999999977775 788999999999
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCCceEEEeecc--------CCCEEEEEEcCCCCEEEEEECCCeEEEEecC
Q 005096 366 HEEYFVSGSLDGSIFHWLVGHETPQVEIHNVH--------DNTVWDLAWHPIGYLLCSGSNDHTTKFWCRN 428 (715)
Q Consensus 366 ~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h--------~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~ 428 (715)
+..+|+.+. +..|+|||+++...+..+.... .-...+++|+.||..|++|..|+.|++|.+.
T Consensus 244 nrywL~~at-~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 244 NRYWLCAAT-ATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred CceeEeecc-CCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 666666555 4469999998877655433221 2236788999999999999999999999874
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=311.12 Aligned_cols=296 Identities=22% Similarity=0.361 Sum_probs=273.3
Q ss_pred EEEecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005096 136 VHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQN 215 (715)
Q Consensus 136 ~~~~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~ 215 (715)
+...+.+|.+.|.||++.|.+.+|++|+.|++|+|||+.++++..++.+|-..|..+++|.-..||++++.|+.|+.||+
T Consensus 143 l~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDL 222 (460)
T KOG0285|consen 143 LYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDL 222 (460)
T ss_pred ehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEec
Confidence 34568899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEE
Q 005096 216 NMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVK 295 (715)
Q Consensus 216 ~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~ 295 (715)
+.+++++.+.+|-..|.|++.+|....|++|+.|.+++|||+++...+..+.+|...|.++.+.+.+..+++|+.|++|+
T Consensus 223 e~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvr 302 (460)
T KOG0285|consen 223 EYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVR 302 (460)
T ss_pred hhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999888999999999999
Q ss_pred EEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeC
Q 005096 296 LWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSL 375 (715)
Q Consensus 296 iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~ 375 (715)
+||++.++....+..|+..|.+++.+|+...+|+++.| .|+-|++..+..+..+.+|...|++++.+ .+.++++|++
T Consensus 303 lWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~iintl~~n--sD~v~~~G~d 379 (460)
T KOG0285|consen 303 LWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHNAIINTLSVN--SDGVLVSGGD 379 (460)
T ss_pred EeeeccCceeEeeecccceeeEEecCCchhhhhccCCc-cceeccCCccchhhccccccceeeeeeec--cCceEEEcCC
Confidence 99999999999999999999999999999999998876 69999999999999999999999999998 5789999999
Q ss_pred CCcEEEEEcCCCCceEEEe-------eccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCCCCCcc
Q 005096 376 DGSIFHWLVGHETPQVEIH-------NVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGDTA 434 (715)
Q Consensus 376 DG~I~iwd~~~~~~~~~~~-------~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~~~~ 434 (715)
+|.|.+||.+++....... ...+..|.+.+|...|..|++|..|.+|++|.-++.....
T Consensus 380 ng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~keDe~aT~E 445 (460)
T KOG0285|consen 380 NGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKEDEHATEE 445 (460)
T ss_pred ceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEecccccCcc
Confidence 9999999998876543331 1135579999999999999999999999999876544433
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-38 Score=313.68 Aligned_cols=290 Identities=20% Similarity=0.387 Sum_probs=273.5
Q ss_pred EEEecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005096 136 VHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQN 215 (715)
Q Consensus 136 ~~~~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~ 215 (715)
+...+.+|...|+.+-|+|+-..++++++|++|++||..+++++..+++|...|.+|+|+..|++|++++.|-.+++||.
T Consensus 100 l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~ 179 (406)
T KOG0295|consen 100 LVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDF 179 (406)
T ss_pred chhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeH
Confidence 44567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC-CceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcE
Q 005096 216 NM-NNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLV 294 (715)
Q Consensus 216 ~~-~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I 294 (715)
++ .+++..+.+|+..|.+++|-|.+.+|++++.|.+|+.||+.++.++.++.+|...|..+..+.||.++++++.|.+|
T Consensus 180 ~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl 259 (406)
T KOG0295|consen 180 DTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTL 259 (406)
T ss_pred HHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceE
Confidence 87 56777788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCCCceeEEeccCCCceEEEEEcCC---------------CCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEE
Q 005096 295 KLWDAKSGRELCSFHGHKNMVLCVKWNQN---------------GNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTA 359 (715)
Q Consensus 295 ~iwDl~s~~~~~~~~~~~~~I~sl~~spd---------------g~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~ 359 (715)
++|-+.++.+...++.|...|.|++|.+. +.++++++.|++|++||+.++.++.++.+|...|..
T Consensus 260 ~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~ 339 (406)
T KOG0295|consen 260 RVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRG 339 (406)
T ss_pred EEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeee
Confidence 99999999999999999999999999763 248999999999999999999999999999999999
Q ss_pred EEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEec
Q 005096 360 LAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCR 427 (715)
Q Consensus 360 l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl 427 (715)
++|+| +++||+++.+|++|++||+++..+...+. .|...|++++|+.+..+++||+-|-++++|..
T Consensus 340 ~af~p-~Gkyi~ScaDDktlrvwdl~~~~cmk~~~-ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 340 VAFSP-GGKYILSCADDKTLRVWDLKNLQCMKTLE-AHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred eEEcC-CCeEEEEEecCCcEEEEEeccceeeeccC-CCcceeEEEecCCCCceEEeccccceeeeeec
Confidence 99999 99999999999999999998887765555 79999999999999999999999999999964
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=323.96 Aligned_cols=246 Identities=22% Similarity=0.377 Sum_probs=238.5
Q ss_pred EEecCCCCccEEEEEEcCC--CCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 005096 137 HTSLNKNRCSINRVLWTPT--GRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQ 214 (715)
Q Consensus 137 ~~~l~~H~~~I~~l~~spd--g~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd 214 (715)
..+|.+|...|.++.|+|. +..||+|+.||+|++|++++...+..+.+|...|..++|+|+|++|+|++.|.+-++||
T Consensus 210 ~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD 289 (459)
T KOG0272|consen 210 LQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWD 289 (459)
T ss_pred eEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcc
Confidence 3468999999999999997 66899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcE
Q 005096 215 NNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLV 294 (715)
Q Consensus 215 ~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I 294 (715)
++++.......+|...|.+|+|.+||.++++|+.|..-+|||+++++++..+.+|...|.+|+|+|+|-.|+||+.|+++
T Consensus 290 ~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~ 369 (459)
T KOG0272|consen 290 LETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTC 369 (459)
T ss_pred cccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcE
Confidence 99999988899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCCCceeEEeccCCCceEEEEEcC-CCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEE
Q 005096 295 KLWDAKSGRELCSFHGHKNMVLCVKWNQ-NGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSG 373 (715)
Q Consensus 295 ~iwDl~s~~~~~~~~~~~~~I~sl~~sp-dg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sg 373 (715)
+|||++..+++.++-+|.+.|+.|+|++ .|.+|++++.|++++||..+++.+++++.+|++.|.++.+++ ++.+|+++
T Consensus 370 kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~-d~~~i~t~ 448 (459)
T KOG0272|consen 370 KVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISP-DSQAIATS 448 (459)
T ss_pred EEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEecc-CCceEEEe
Confidence 9999999999999999999999999998 788999999999999999999999999999999999999999 89999999
Q ss_pred eCCCcEEEEE
Q 005096 374 SLDGSIFHWL 383 (715)
Q Consensus 374 s~DG~I~iwd 383 (715)
+.|.+|++|.
T Consensus 449 s~DRT~KLW~ 458 (459)
T KOG0272|consen 449 SFDRTIKLWR 458 (459)
T ss_pred ccCceeeecc
Confidence 9999999995
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-36 Score=310.12 Aligned_cols=287 Identities=30% Similarity=0.520 Sum_probs=264.8
Q ss_pred EecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 005096 138 TSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNM 217 (715)
Q Consensus 138 ~~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~ 217 (715)
..+.+|.+.|++++|++++++|++++.||.|++||+.+.+....+..|...+.++.|++++++|++++.|+.|++||+..
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~ 82 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLET 82 (289)
T ss_pred hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCc
Confidence 35678999999999999999999999999999999999888889999999999999999999999999999999999998
Q ss_pred CceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEE
Q 005096 218 NNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLW 297 (715)
Q Consensus 218 ~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iw 297 (715)
++....+..|...|.+++|+++++++++++.|+.|++||+++.+....+..|...|.+++|++++.+|++++.|+.|++|
T Consensus 83 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~ 162 (289)
T cd00200 83 GECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLW 162 (289)
T ss_pred ccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEE
Confidence 88888888888899999999998888888889999999999888888888898999999999998888888889999999
Q ss_pred ECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCC
Q 005096 298 DAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDG 377 (715)
Q Consensus 298 Dl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG 377 (715)
|+++++.+..+..+...|.+++|+++++.|++++.|+.|++||+++++.+..+..+...+.+++|++ ++.++++++.||
T Consensus 163 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~ 241 (289)
T cd00200 163 DLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSP-DGYLLASGSEDG 241 (289)
T ss_pred EccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcC-CCcEEEEEcCCC
Confidence 9999988888888888999999999999999999999999999999999999988999999999999 588888888899
Q ss_pred cEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEe
Q 005096 378 SIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWC 426 (715)
Q Consensus 378 ~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWd 426 (715)
.|++||+.+......+. .|...|.+++|++++.+|++++.||.|++|+
T Consensus 242 ~i~i~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 242 TIRVWDLRTGECVQTLS-GHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred cEEEEEcCCceeEEEcc-ccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 99999998766554444 6888999999999999999999999999996
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-36 Score=296.38 Aligned_cols=292 Identities=25% Similarity=0.382 Sum_probs=252.4
Q ss_pred CCCCcccchhhhhcccccccceEeeehhhheeeEEEEEeccCCCccccccCchhhhcCccceeecCCCCCceeeeEEEEe
Q 005096 60 PYDAHGDSFAAKRMRKLTQRRAVDYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSFAAKFVHTS 139 (715)
Q Consensus 60 ~~~~h~~~~~~~r~~~~~~~~~~~~~~~~~~~~~irvW~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 139 (715)
.+.+|++++.+.++... ..+.+.+..|+..|.+|++.+.+... -...+.
T Consensus 10 tl~gh~d~Vt~la~~~~----~~~~l~sasrDk~ii~W~L~~dd~~~---------------------------G~~~r~ 58 (315)
T KOG0279|consen 10 TLEGHTDWVTALAIKIK----NSDILVSASRDKTIIVWKLTSDDIKY---------------------------GVPVRR 58 (315)
T ss_pred eecCCCceEEEEEeecC----CCceEEEcccceEEEEEEeccCcccc---------------------------Cceeee
Confidence 47889999988666442 45667778899999999987553111 112447
Q ss_pred cCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc
Q 005096 140 LNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNN 219 (715)
Q Consensus 140 l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~ 219 (715)
+.||+..|+.++.++||++.++++.|+++++||+.+++..+.|.+|...|.+++|++|++.|++|+.|.+|++|++....
T Consensus 59 ~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~c 138 (315)
T KOG0279|consen 59 LTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVC 138 (315)
T ss_pred eeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccE
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999988765
Q ss_pred eeeeecCC-CCCeEEEEEecC--CCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEE
Q 005096 220 VKANKSAH-KESVRDLSFCRT--DLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKL 296 (715)
Q Consensus 220 ~~~~~~~h-~~~I~~l~~spd--~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~i 296 (715)
........ .+.|+|++|+|+ +.+|++++.|++|++||+++.+....+.+|.+.++.++++|||.++++|++||.+.+
T Consensus 139 k~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~L 218 (315)
T KOG0279|consen 139 KYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAML 218 (315)
T ss_pred EEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEE
Confidence 55444443 889999999998 688999999999999999999999999999999999999999999999999999999
Q ss_pred EECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecC---------CCCeEEEEEccCCC
Q 005096 297 WDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGH---------RKDVTALAWHPFHE 367 (715)
Q Consensus 297 wDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h---------~~~V~~l~~sp~~~ 367 (715)
||++.++.+..+. +...|.+++|+|+.-+|+.+. +..|+|||+++..++.+++.. .-...+++|+. ++
T Consensus 219 wdL~~~k~lysl~-a~~~v~sl~fspnrywL~~at-~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~-dG 295 (315)
T KOG0279|consen 219 WDLNEGKNLYSLE-AFDIVNSLCFSPNRYWLCAAT-ATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSA-DG 295 (315)
T ss_pred EEccCCceeEecc-CCCeEeeEEecCCceeEeecc-CCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcC-CC
Confidence 9999999988876 788899999999877666655 556999999999888776522 23356789998 89
Q ss_pred CEEEEEeCCCcEEEEEcC
Q 005096 368 EYFVSGSLDGSIFHWLVG 385 (715)
Q Consensus 368 ~~l~sgs~DG~I~iwd~~ 385 (715)
..|++|..|+.|++|.+.
T Consensus 296 ~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 296 QTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred cEEEeeecCCcEEEEEee
Confidence 999999999999999874
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-36 Score=311.11 Aligned_cols=280 Identities=24% Similarity=0.476 Sum_probs=259.8
Q ss_pred CccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeee
Q 005096 144 RCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKAN 223 (715)
Q Consensus 144 ~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~ 223 (715)
+..|++++|+.+|.+||+|+.||.++||+. ++.++.++..|.+.|.+|.|+.+|+||++++.|+++.+||..++.....
T Consensus 235 nkdVT~L~Wn~~G~~LatG~~~G~~riw~~-~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~ 313 (524)
T KOG0273|consen 235 NKDVTSLDWNNDGTLLATGSEDGEARIWNK-DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQ 313 (524)
T ss_pred cCCcceEEecCCCCeEEEeecCcEEEEEec-CchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEe
Confidence 457999999999999999999999999995 4678889999999999999999999999999999999999999999999
Q ss_pred ecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 005096 224 KSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGR 303 (715)
Q Consensus 224 ~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~ 303 (715)
+..|...-.++.|-.+ ..|++++.|+.|+|+.+.....+.++.+|.+.|.+|.|++.+.+|+++++|++++||+.....
T Consensus 314 f~~~s~~~lDVdW~~~-~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~ 392 (524)
T KOG0273|consen 314 FEFHSAPALDVDWQSN-DEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSN 392 (524)
T ss_pred eeeccCCccceEEecC-ceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCc
Confidence 9888888788899744 568999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEeccCCCceEEEEEcCCC---------CEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEe
Q 005096 304 ELCSFHGHKNMVLCVKWNQNG---------NWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGS 374 (715)
Q Consensus 304 ~~~~~~~~~~~I~sl~~spdg---------~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs 374 (715)
+...+..|...|..+.|+|++ ..|++++.|++|++||+..+.++..|..|...|++|+|++ +++++++|+
T Consensus 393 ~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~-~g~ylAsGs 471 (524)
T KOG0273|consen 393 SVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSP-NGRYLASGS 471 (524)
T ss_pred chhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecC-CCcEEEecC
Confidence 999999999999999999854 4689999999999999999999999999999999999999 999999999
Q ss_pred CCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecC
Q 005096 375 LDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRN 428 (715)
Q Consensus 375 ~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~ 428 (715)
.||.|.||+..+.+...... ..+.|..++|+.+|.+|..+-.|+.+++-|+.
T Consensus 472 ~dg~V~iws~~~~~l~~s~~--~~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 472 LDGCVHIWSTKTGKLVKSYQ--GTGGIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred CCCeeEeccccchheeEeec--CCCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 99999999998887655544 35679999999999999999999999999874
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-36 Score=289.59 Aligned_cols=286 Identities=22% Similarity=0.445 Sum_probs=248.5
Q ss_pred EEEecCCCCccEEEEEEcCC-CCEEEEEeCCCeEEEEeCCC---CceEEEE-eccCCCEEEEEEcCCCCEEEEEeCCCcE
Q 005096 136 VHTSLNKNRCSINRVLWTPT-GRRLITGSQSGEFTLWNGQS---FNFEMIL-QAHDHAIRSMVWSHNDNWMVSGDDGGAI 210 (715)
Q Consensus 136 ~~~~l~~H~~~I~~l~~spd-g~~Latgs~dg~I~Iwd~~~---~~~~~~l-~~h~~~V~~l~~spdg~~L~tgs~dg~I 210 (715)
..+.+.+|+++|..++|+|- |..||+|+.|..|+||+... ..+...+ .+|+..|++++|+|.|++|++++.|.++
T Consensus 6 ~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~ 85 (312)
T KOG0645|consen 6 LEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATV 85 (312)
T ss_pred eEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceE
Confidence 45678999999999999998 89999999999999999884 3344333 3689999999999999999999999999
Q ss_pred EEEeCCCC--ceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECC---CCeeEEEecccCCceEEEEEcCCCCEE
Q 005096 211 KYWQNNMN--NVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFA---RCQEERSLTGHGWDVKSVDWHPTKSLL 285 (715)
Q Consensus 211 ~iwd~~~~--~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~---~~~~~~~l~~~~~~I~si~~spdg~~L 285 (715)
.||.-..+ +++.++.+|...|.|++|+.+|++||+|++|+.|.||.+. ..++...+..|...|..+.|+|...+|
T Consensus 86 ~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL 165 (312)
T KOG0645|consen 86 VIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLL 165 (312)
T ss_pred EEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCccee
Confidence 99986654 6788899999999999999999999999999999999986 345677889999999999999999999
Q ss_pred EEEeCCCcEEEEECC---CCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEE
Q 005096 286 VSGGKDSLVKLWDAK---SGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAW 362 (715)
Q Consensus 286 ~sgs~Dg~I~iwDl~---s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~ 362 (715)
++++.|++|++|+-. ...++.++.+|.+.|.+++|++.|..|++++.|++|+||...+. .-..|...++.+.|
T Consensus 166 ~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~----~~~~~sr~~Y~v~W 241 (312)
T KOG0645|consen 166 FSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD----LSGMHSRALYDVPW 241 (312)
T ss_pred EEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccC----cchhcccceEeeee
Confidence 999999999999765 35688999999999999999999999999999999999987621 11247788999999
Q ss_pred ccCCCCEEEEEeCCCcEEEEEcCCC------CceEEEeeccCCCEEEEEEcCC-CCEEEEEECCCeEEEEecC
Q 005096 363 HPFHEEYFVSGSLDGSIFHWLVGHE------TPQVEIHNVHDNTVWDLAWHPI-GYLLCSGSNDHTTKFWCRN 428 (715)
Q Consensus 363 sp~~~~~l~sgs~DG~I~iwd~~~~------~~~~~~~~~h~~~V~~l~~spd-g~~L~sgs~Dg~I~iWdl~ 428 (715)
. ...|++++.|+.|++|..... ..+.+....|+..|+++.|++. ..+|++++.||.|++|.+.
T Consensus 242 ~---~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 242 D---NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred c---ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 6 678999999999999976542 1223345678899999999995 7899999999999999874
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-35 Score=307.89 Aligned_cols=367 Identities=19% Similarity=0.355 Sum_probs=293.2
Q ss_pred CCCCcccchhhhhcccccccceEeeehhhheeeEEEEEeccCCCccccccCchhhhcCccceeecCC---------CCCc
Q 005096 60 PYDAHGDSFAAKRMRKLTQRRAVDYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDN---------PSTS 130 (715)
Q Consensus 60 ~~~~h~~~~~~~r~~~~~~~~~~~~~~~~~~~~~irvW~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---------~~~~ 130 (715)
.|.+|...+..-|+.. ...|.++....+++|+|+.-..+ ..+.........-+..+.|... ++..
T Consensus 54 iYtEH~~~vtVAkySP-----sG~yiASGD~sG~vRIWdtt~~~-hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrer 127 (603)
T KOG0318|consen 54 IYTEHAHQVTVAKYSP-----SGFYIASGDVSGKVRIWDTTQKE-HILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRER 127 (603)
T ss_pred eeccccceeEEEEeCC-----CceEEeecCCcCcEEEEeccCcc-eeeeeeeeecccccccceeCCCCcEEEEEecCccc
Confidence 3555554444433332 34578888888999999976543 2233332222222333333322 2223
Q ss_pred eeeeEEE------EecCCCCccEEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEE
Q 005096 131 FAAKFVH------TSLNKNRCSINRVLWTPTGR-RLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVS 203 (715)
Q Consensus 131 ~~~~~~~------~~l~~H~~~I~~l~~spdg~-~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~t 203 (715)
|...|+. -++.+|...|++++|-|... +++||++|++|.+|+-.-.+...++..|..-|+|+.|+|||+++++
T Consensus 128 fg~~F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat 207 (603)
T KOG0318|consen 128 FGHVFLWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFAT 207 (603)
T ss_pred eeEEEEecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEE
Confidence 4333432 35789999999999999775 5899999999999999999999999999999999999999999999
Q ss_pred EeCCCcEEEEeCCCCceeeeec---CCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEE---------------
Q 005096 204 GDDGGAIKYWQNNMNNVKANKS---AHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERS--------------- 265 (715)
Q Consensus 204 gs~dg~I~iwd~~~~~~~~~~~---~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~--------------- 265 (715)
++.||.|.|||-.+++.+..+. .|++.|.+|+|+||+..|++++.|.+++|||+.+.+++++
T Consensus 208 ~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~l 287 (603)
T KOG0318|consen 208 AGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCL 287 (603)
T ss_pred ecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEE
Confidence 9999999999999999988887 8999999999999999999999999999999976555332
Q ss_pred ----------------------------ecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEE----------
Q 005096 266 ----------------------------LTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCS---------- 307 (715)
Q Consensus 266 ----------------------------l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~---------- 307 (715)
+.+|...|++++.++|+++|++|+.||.|.-||+.++..-+.
T Consensus 288 Wqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~ 367 (603)
T KOG0318|consen 288 WQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIK 367 (603)
T ss_pred EeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEE
Confidence 347888999999999999999999999999999865432100
Q ss_pred -ec---------------------------cC-------------------------------------------CCceE
Q 005096 308 -FH---------------------------GH-------------------------------------------KNMVL 316 (715)
Q Consensus 308 -~~---------------------------~~-------------------------------------------~~~I~ 316 (715)
+. .+ .....
T Consensus 368 ~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s 447 (603)
T KOG0318|consen 368 GMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESS 447 (603)
T ss_pred EEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccc
Confidence 00 00 01235
Q ss_pred EEEEcCCCCEEEEEECCCeEEEEECCCCeE--EEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEe
Q 005096 317 CVKWNQNGNWVLTASKDQIIKLYDIRAMKE--LESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIH 394 (715)
Q Consensus 317 sl~~spdg~~Lasgs~dg~I~iwDl~t~~~--~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~ 394 (715)
+++++++++.+++|+.|+.|+||.+..+.. ...+..|...|++|+++| ++.+||+|...+.|.+||+.+.+......
T Consensus 448 ~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySp-d~~yla~~Da~rkvv~yd~~s~~~~~~~w 526 (603)
T KOG0318|consen 448 AVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSP-DGAYLAAGDASRKVVLYDVASREVKTNRW 526 (603)
T ss_pred eEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECC-CCcEEEEeccCCcEEEEEcccCceeccee
Confidence 788899999999999999999999986553 334567999999999999 99999999999999999999887766666
Q ss_pred eccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCCCCCc
Q 005096 395 NVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGDT 433 (715)
Q Consensus 395 ~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~~~ 433 (715)
..|...|.+++|+|+..+||||+.|-.|.||+++++.+.
T Consensus 527 ~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~ 565 (603)
T KOG0318|consen 527 AFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKH 565 (603)
T ss_pred eeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhh
Confidence 669999999999999999999999999999999887765
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-36 Score=286.69 Aligned_cols=274 Identities=18% Similarity=0.316 Sum_probs=246.9
Q ss_pred CEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc--eeeeecCCCCCeEEE
Q 005096 157 RRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNN--VKANKSAHKESVRDL 234 (715)
Q Consensus 157 ~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~--~~~~~~~h~~~I~~l 234 (715)
-+|++++.|.+|++|...++.+.+++...++.|+.+.+.+|++.|++++. -.|++||+++++ .+.++.+|...|.++
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaV 89 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAV 89 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEE
Confidence 37899999999999999999999999988999999999999999998875 679999999875 588899999999999
Q ss_pred EEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEec-cCCC
Q 005096 235 SFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFH-GHKN 313 (715)
Q Consensus 235 ~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~-~~~~ 313 (715)
.|..+|+.++++++||+++|||++...+-+.+. +...|++|..+|+...|++|..+|.|+|||+.+..+...+. ....
T Consensus 90 gF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~ 168 (311)
T KOG0315|consen 90 GFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDT 168 (311)
T ss_pred EEeecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCc
Confidence 999999999999999999999999976666665 66999999999999999999999999999999877666553 3456
Q ss_pred ceEEEEEcCCCCEEEEEECCCeEEEEECCCC------eEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCC
Q 005096 314 MVLCVKWNQNGNWVLTASKDQIIKLYDIRAM------KELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHE 387 (715)
Q Consensus 314 ~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~------~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~ 387 (715)
.|.++...+||++|+.+...|..++|++-+. +.+..++.|.+.+..+.+|| +.++|++++.|.+++||+.++-
T Consensus 169 ~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSP-d~k~lat~ssdktv~iwn~~~~ 247 (311)
T KOG0315|consen 169 SIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSP-DVKYLATCSSDKTVKIWNTDDF 247 (311)
T ss_pred ceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECC-CCcEEEeecCCceEEEEecCCc
Confidence 7999999999999999999999999998653 45677889999999999999 8999999999999999999887
Q ss_pred CceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCCCCCc
Q 005096 388 TPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGDT 433 (715)
Q Consensus 388 ~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~~~ 433 (715)
......+.+|...+++++||.|+.||+|++.|+.+++|++...++.
T Consensus 248 ~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v 293 (311)
T KOG0315|consen 248 FKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEV 293 (311)
T ss_pred eeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCcee
Confidence 5666677789999999999999999999999999999999765443
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-35 Score=314.67 Aligned_cols=344 Identities=21% Similarity=0.334 Sum_probs=290.8
Q ss_pred ehhhheeeEEEEEeccCCCccccccCchhhhcCccceeecCCC----CCceeeeEEEEecCCCCccEEEEEEcCCCCEEE
Q 005096 85 TSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNP----STSFAAKFVHTSLNKNRCSINRVLWTPTGRRLI 160 (715)
Q Consensus 85 ~~~~~~~~~irvW~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----~~~~~~~~~~~~l~~H~~~I~~l~~spdg~~La 160 (715)
+.++.+++.+-+|..+.+-...... ....+.-......+.. ...+..+.....++.....|+|.+|++..+.||
T Consensus 204 l~tvskdG~l~~W~~~~~P~~~~~~--~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lv 281 (893)
T KOG0291|consen 204 LYTVSKDGALFVWTCDLRPPELDKA--EKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLV 281 (893)
T ss_pred EEEEecCceEEEEEecCCCcccccc--cccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEE
Confidence 4567889999999987442111111 0001110001111111 112333334455666778999999999999999
Q ss_pred EEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCC-CcEEEEeCCCCceeeeecCCCCCeEEEEEecC
Q 005096 161 TGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDG-GAIKYWQNNMNNVKANKSAHKESVRDLSFCRT 239 (715)
Q Consensus 161 tgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~d-g~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd 239 (715)
+|-.+|.+.||++....++..+...+..|..++|+..|++|+.|+.. |.+.||++.+...+....+|...++++++++|
T Consensus 282 vgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpD 361 (893)
T KOG0291|consen 282 VGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPD 361 (893)
T ss_pred EEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCC
Confidence 99999999999999999999999999999999999999999988765 89999999999999999999999999999999
Q ss_pred CCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccC-CCceEEE
Q 005096 240 DLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGH-KNMVLCV 318 (715)
Q Consensus 240 ~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~-~~~I~sl 318 (715)
|.+||+|++||+|+|||..++-+..+|..|...|+.+.|+..++.|++.+.||+|+.||+...+..+++... .....|+
T Consensus 362 gq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~Qfscv 441 (893)
T KOG0291|consen 362 GQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCV 441 (893)
T ss_pred CcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEE
Confidence 999999999999999999999999999999999999999999999999999999999999999999998743 3457899
Q ss_pred EEcCCCCEEEEEECCC-eEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeecc
Q 005096 319 KWNQNGNWVLTASKDQ-IIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVH 397 (715)
Q Consensus 319 ~~spdg~~Lasgs~dg-~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h 397 (715)
+..+.|.++++|+.|. .|.||++.+|+.+..+.+|+++|.+++|++ .+..|++++.|.+|++||+-......+.+. +
T Consensus 442 avD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~-~~~~LaS~SWDkTVRiW~if~s~~~vEtl~-i 519 (893)
T KOG0291|consen 442 AVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSP-DGSLLASGSWDKTVRIWDIFSSSGTVETLE-I 519 (893)
T ss_pred EEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEcc-ccCeEEeccccceEEEEEeeccCceeeeEe-e
Confidence 9999999999998876 699999999999999999999999999999 888999999999999999977655555553 5
Q ss_pred CCCEEEEEEcCCCCEEEEEECCCeEEEEecCCCCC
Q 005096 398 DNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGD 432 (715)
Q Consensus 398 ~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~~ 432 (715)
...|..++|.|||+.|++++.||.|.+||.+....
T Consensus 520 ~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q 554 (893)
T KOG0291|consen 520 RSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQ 554 (893)
T ss_pred ccceeEEEEcCCCCeEEEEEecceEEEEEhhhcee
Confidence 66899999999999999999999999999876554
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-35 Score=303.89 Aligned_cols=291 Identities=22% Similarity=0.407 Sum_probs=252.3
Q ss_pred EEEecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEe---ccCCCEEEEEEcCCCCEEEEEeCCCcEEE
Q 005096 136 VHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQ---AHDHAIRSMVWSHNDNWMVSGDDGGAIKY 212 (715)
Q Consensus 136 ~~~~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~---~h~~~V~~l~~spdg~~L~tgs~dg~I~i 212 (715)
.+.++..|..-|+|+.|+|||.++|+++.||+|.|||-.+++.+..+. +|.+.|.+|+|+||++.|+|++.|.+++|
T Consensus 182 Fk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KI 261 (603)
T KOG0318|consen 182 FKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKI 261 (603)
T ss_pred eeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEE
Confidence 456788999999999999999999999999999999999999999998 89999999999999999999999999999
Q ss_pred EeCCCCceeeee-------------------------------------------cCCCCCeEEEEEecCCCEEEEEECC
Q 005096 213 WQNNMNNVKANK-------------------------------------------SAHKESVRDLSFCRTDLKFCSCSDD 249 (715)
Q Consensus 213 wd~~~~~~~~~~-------------------------------------------~~h~~~I~~l~~spd~~~Las~s~D 249 (715)
||+.+.+++.++ .+|...|+++..++|+++|++|+.|
T Consensus 262 WdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyD 341 (603)
T KOG0318|consen 262 WDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYD 341 (603)
T ss_pred EEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccC
Confidence 998766554432 4788999999999999999999999
Q ss_pred CcEEEEECCCCeeEE-------------------------------Ee--------------------------------
Q 005096 250 TTVKVWDFARCQEER-------------------------------SL-------------------------------- 266 (715)
Q Consensus 250 g~V~iwdl~~~~~~~-------------------------------~l-------------------------------- 266 (715)
|.|.-||+.++..-+ .+
T Consensus 342 G~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~av 421 (603)
T KOG0318|consen 342 GHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAV 421 (603)
T ss_pred ceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEE
Confidence 999999985432210 00
Q ss_pred ----------cc--------cCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCc--eeEEeccCCCceEEEEEcCCCCE
Q 005096 267 ----------TG--------HGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGR--ELCSFHGHKNMVLCVKWNQNGNW 326 (715)
Q Consensus 267 ----------~~--------~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~--~~~~~~~~~~~I~sl~~spdg~~ 326 (715)
.. ......+++++++++.+++|+.|++|+||.+.... ....+..|.+.|++|+||||+.+
T Consensus 422 v~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~y 501 (603)
T KOG0318|consen 422 VACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAY 501 (603)
T ss_pred EEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcE
Confidence 00 01124678899999999999999999999998654 33345679999999999999999
Q ss_pred EEEEECCCeEEEEECCCCeEE-EEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEE
Q 005096 327 VLTASKDQIIKLYDIRAMKEL-ESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLA 405 (715)
Q Consensus 327 Lasgs~dg~I~iwDl~t~~~~-~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~ 405 (715)
||++...+.|.+||+.+.+.. ..+.-|...|.+++|+| +..++|+|+.|-.|.||+++.....+.+..+|...|+.+.
T Consensus 502 la~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP-~n~~vATGSlDt~Viiysv~kP~~~i~iknAH~~gVn~v~ 580 (603)
T KOG0318|consen 502 LAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSP-NNKLVATGSLDTNVIIYSVKKPAKHIIIKNAHLGGVNSVA 580 (603)
T ss_pred EEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCC-CceEEEeccccceEEEEEccChhhheEeccccccCceeEE
Confidence 999999999999999987764 33445999999999999 8999999999999999999998888889999999999999
Q ss_pred EcCCCCEEEEEECCCeEEEEecC
Q 005096 406 WHPIGYLLCSGSNDHTTKFWCRN 428 (715)
Q Consensus 406 ~spdg~~L~sgs~Dg~I~iWdl~ 428 (715)
|. |...|++.+.|-.|++|++.
T Consensus 581 wl-de~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 581 WL-DESTVVSSGQDANIKVWNVT 602 (603)
T ss_pred Ee-cCceEEeccCcceeEEeccc
Confidence 98 45678999999999999874
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-36 Score=326.60 Aligned_cols=248 Identities=20% Similarity=0.417 Sum_probs=233.5
Q ss_pred cCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC-------------------------------ceEEEEeccCCC
Q 005096 140 LNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSF-------------------------------NFEMILQAHDHA 188 (715)
Q Consensus 140 l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~-------------------------------~~~~~l~~h~~~ 188 (715)
+......++|+.|+.|++.||.|..|..|++|.+... ...+++.+|.+.
T Consensus 374 ~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GP 453 (707)
T KOG0263|consen 374 FHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGP 453 (707)
T ss_pred EEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCc
Confidence 3334567999999999999999999999999986631 123457899999
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecc
Q 005096 189 IRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTG 268 (715)
Q Consensus 189 V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~ 268 (715)
|..+.|+|+.++|+++++|++|++|.+.+...+..+++|..+|+++.|+|.|-+||+++.|++-++|.......++.+.+
T Consensus 454 Vyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifag 533 (707)
T KOG0263|consen 454 VYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAG 533 (707)
T ss_pred eeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEE
Q 005096 269 HGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELE 348 (715)
Q Consensus 269 ~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~ 348 (715)
|.+.|.|+.|+|+.+++++|+.|.+|++||+.+|..++.|.+|.+.|++++|||+|++|++|+.|+.|+|||+.+++.+.
T Consensus 534 hlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~ 613 (707)
T KOG0263|consen 534 HLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVK 613 (707)
T ss_pred cccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCC
Q 005096 349 SFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHET 388 (715)
Q Consensus 349 ~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~ 388 (715)
.+.+|.+.|.+|.|+. ++.+||+|+.|.+|++||+....
T Consensus 614 ~l~~Ht~ti~SlsFS~-dg~vLasgg~DnsV~lWD~~~~~ 652 (707)
T KOG0263|consen 614 QLKGHTGTIYSLSFSR-DGNVLASGGADNSVRLWDLTKVI 652 (707)
T ss_pred hhhcccCceeEEEEec-CCCEEEecCCCCeEEEEEchhhc
Confidence 9999999999999999 89999999999999999986543
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-35 Score=326.42 Aligned_cols=290 Identities=27% Similarity=0.475 Sum_probs=261.0
Q ss_pred EEecCC-CCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc--eEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 005096 137 HTSLNK-NRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFN--FEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYW 213 (715)
Q Consensus 137 ~~~l~~-H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~--~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iw 213 (715)
...+.+ |...|.|+.|+++|++|++++.|+.|++|+..+.+ ....+.+|...|.+++|++++++|++++.|++|+||
T Consensus 151 ~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriw 230 (456)
T KOG0266|consen 151 EQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIW 230 (456)
T ss_pred eeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEe
Confidence 344444 48899999999999999999999999999998777 777888999999999999999999999999999999
Q ss_pred eC-CCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCC
Q 005096 214 QN-NMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDS 292 (715)
Q Consensus 214 d~-~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg 292 (715)
|+ ..+....++++|...|++++|+++++++++|+.|++|+|||+++++++..+.+|...|++++|++++++|++++.|+
T Consensus 231 d~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~ 310 (456)
T KOG0266|consen 231 DLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDG 310 (456)
T ss_pred eccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCc
Confidence 99 45588899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEECCCCc--eeEEeccCCCc--eEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeE---EEEEccC
Q 005096 293 LVKLWDAKSGR--ELCSFHGHKNM--VLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVT---ALAWHPF 365 (715)
Q Consensus 293 ~I~iwDl~s~~--~~~~~~~~~~~--I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~---~l~~sp~ 365 (715)
.|+|||+.++. ++..+..+... ++++.|++++++|++++.|+.+++||++.++.+..+.+|...+. +...+.
T Consensus 311 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~- 389 (456)
T KOG0266|consen 311 TIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLST- 389 (456)
T ss_pred cEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccC-
Confidence 99999999998 55666655555 99999999999999999999999999999999999999888643 333444
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCCceEEEeecc-CCCEEEEEEcCCCCEEEEEE--CCCeEEEEecC
Q 005096 366 HEEYFVSGSLDGSIFHWLVGHETPQVEIHNVH-DNTVWDLAWHPIGYLLCSGS--NDHTTKFWCRN 428 (715)
Q Consensus 366 ~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h-~~~V~~l~~spdg~~L~sgs--~Dg~I~iWdl~ 428 (715)
++.++++|+.|+.|++||+.+...+. ...+| ...|..++|++...++++++ .|+.|++|..+
T Consensus 390 ~~~~i~sg~~d~~v~~~~~~s~~~~~-~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 390 GGKLIYSGSEDGSVYVWDSSSGGILQ-RLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred CCCeEEEEeCCceEEEEeCCccchhh-hhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 88999999999999999998855544 44467 88999999999999999998 79999999864
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-35 Score=287.68 Aligned_cols=286 Identities=22% Similarity=0.420 Sum_probs=256.7
Q ss_pred ecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeC-CCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 005096 139 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNG-QSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNM 217 (715)
Q Consensus 139 ~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~-~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~ 217 (715)
.+.+|++.|+.+.|+|+|.+||+|+.|..|.||++ ...+....+++|.+.|..+.|..|++.|++++.|.+|+.||.++
T Consensus 42 ~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~t 121 (338)
T KOG0265|consen 42 LLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAET 121 (338)
T ss_pred hcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEeccc
Confidence 47799999999999999999999999999999994 44566778889999999999999999999999999999999999
Q ss_pred CceeeeecCCCCCeEEEEEecCC-CEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEE
Q 005096 218 NNVKANKSAHKESVRDLSFCRTD-LKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKL 296 (715)
Q Consensus 218 ~~~~~~~~~h~~~I~~l~~spd~-~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~i 296 (715)
++.....+.|..-|+.+.-+.-+ .++.+++.|++++|||+++...++++. ....++++.|..++..+++|+-|+.|++
T Consensus 122 G~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d~s~qv~sggIdn~ikv 200 (338)
T KOG0265|consen 122 GKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKDTSDQVISGGIDNDIKV 200 (338)
T ss_pred ceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-cceeEEEEEecccccceeeccccCceee
Confidence 99999999999999999976655 456788899999999999888877775 4568999999999999999999999999
Q ss_pred EECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCC----CeEEEEeecCC----CCeEEEEEccCCCC
Q 005096 297 WDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRA----MKELESFRGHR----KDVTALAWHPFHEE 368 (715)
Q Consensus 297 wDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t----~~~~~~~~~h~----~~V~~l~~sp~~~~ 368 (715)
||++.+..+..+.+|.+.|+.+..+++|.++++-+.|.+|++||++- .+++..+.+|. .....++|+| +++
T Consensus 201 Wd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp-~~~ 279 (338)
T KOG0265|consen 201 WDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSP-NGT 279 (338)
T ss_pred eccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccC-CCC
Confidence 99999999999999999999999999999999999999999999985 34577777654 4567889999 899
Q ss_pred EEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEec
Q 005096 369 YFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCR 427 (715)
Q Consensus 369 ~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl 427 (715)
.+.+|+.|..+++||......+ ..+.+|.+.|++++|+|...+|.+++.|.+|++=.+
T Consensus 280 ~i~ags~dr~vyvwd~~~r~~l-yklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lgei 337 (338)
T KOG0265|consen 280 KITAGSADRFVYVWDTTSRRIL-YKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLGEI 337 (338)
T ss_pred ccccccccceEEEeecccccEE-EEcCCcceeEEEeeecCCCcEEEEeccCceeEeecc
Confidence 9999999999999999665544 455589999999999999999999999999987543
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-37 Score=304.90 Aligned_cols=275 Identities=24% Similarity=0.464 Sum_probs=247.3
Q ss_pred CCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceee
Q 005096 143 NRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKA 222 (715)
Q Consensus 143 H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~ 222 (715)
....|+|+.+ |...+++|..|++|+|||.++..+.+++.+|.+.|.|+.|. .+.|++|+.|.+|+|||+++++.+.
T Consensus 196 ~skgVYClQY--DD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~ 271 (499)
T KOG0281|consen 196 NSKGVYCLQY--DDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLN 271 (499)
T ss_pred cCCceEEEEe--cchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhh
Confidence 5678999998 45579999999999999999999999999999999999984 6799999999999999999999999
Q ss_pred eecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCe---eEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 005096 223 NKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQ---EERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDA 299 (715)
Q Consensus 223 ~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~---~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl 299 (715)
++..|.+.|..+.|+ +.++++++.|.+|.+||+.... +.+.+.+|...|+.+.|+ .+++++++.|.+|++|++
T Consensus 272 tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~ 347 (499)
T KOG0281|consen 272 TLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWST 347 (499)
T ss_pred HHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEec
Confidence 999999999999996 5699999999999999996644 335678999999999997 679999999999999999
Q ss_pred CCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcE
Q 005096 300 KSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSI 379 (715)
Q Consensus 300 ~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I 379 (715)
.+++.++++.+|...|.|+.+. ++++++|+.|.+|++||+..|.++..+.+|+.-|.++.| +++.|++|..||+|
T Consensus 348 st~efvRtl~gHkRGIAClQYr--~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRF---d~krIVSGaYDGki 422 (499)
T KOG0281|consen 348 STCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF---DNKRIVSGAYDGKI 422 (499)
T ss_pred cceeeehhhhcccccceehhcc--CeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheee---cCceeeeccccceE
Confidence 9999999999999999999874 899999999999999999999999999999999999999 67899999999999
Q ss_pred EEEEcCCCCce--------EEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCCCCC
Q 005096 380 FHWLVGHETPQ--------VEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGD 432 (715)
Q Consensus 380 ~iwd~~~~~~~--------~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~~ 432 (715)
+|||+...... ......|.+.|..+.|. ...|++++.|.+|.|||+.....
T Consensus 423 kvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD--~fqIvsssHddtILiWdFl~~~~ 481 (499)
T KOG0281|consen 423 KVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD--EFQIISSSHDDTILIWDFLNGPP 481 (499)
T ss_pred EEEecccccCCcccccchHHHhhhhccceeEEEeec--ceEEEeccCCCeEEEEEcCCCCc
Confidence 99999765432 23344588999999994 77899999999999999865433
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-34 Score=288.00 Aligned_cols=288 Identities=19% Similarity=0.310 Sum_probs=255.2
Q ss_pred EEecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 005096 137 HTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNN 216 (715)
Q Consensus 137 ~~~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~ 216 (715)
..++.+|++.|.+++.+|+.++++||+.|..-.||++.+++....+.+|+..|+++.|+.|+.+||||+-+|.|+||+..
T Consensus 57 ~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~s 136 (399)
T KOG0296|consen 57 LVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVS 136 (399)
T ss_pred eeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcc
Confidence 34788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEE
Q 005096 217 MNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKL 296 (715)
Q Consensus 217 ~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~i 296 (715)
++.....+...-+.|.-+.|+|.+..|++|+.||.|.+|.+.+....+.+.+|...+++=.|.|+|++++++..||+|++
T Consensus 137 tg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~ 216 (399)
T KOG0296|consen 137 TGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIV 216 (399)
T ss_pred cCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEE
Confidence 99988888777788999999999999999999999999999998888999999999999999999999999999999999
Q ss_pred EECCCCceeEEeccC---------------------------------------------------CCc---eEEEEEcC
Q 005096 297 WDAKSGRELCSFHGH---------------------------------------------------KNM---VLCVKWNQ 322 (715)
Q Consensus 297 wDl~s~~~~~~~~~~---------------------------------------------------~~~---I~sl~~sp 322 (715)
||++++..+.++... ... |.++.|+.
T Consensus 217 Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss 296 (399)
T KOG0296|consen 217 WNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSS 296 (399)
T ss_pred EecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhccccc
Confidence 999998776655410 001 12223333
Q ss_pred CCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEE
Q 005096 323 NGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVW 402 (715)
Q Consensus 323 dg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~ 402 (715)
.-.+.|+|+.||+|.|||+.+.+....+. |...|+.+.|.. ..+|++++.+|.|++||.+++...... .+|...|.
T Consensus 297 ~lpL~A~G~vdG~i~iyD~a~~~~R~~c~-he~~V~~l~w~~--t~~l~t~c~~g~v~~wDaRtG~l~~~y-~GH~~~Il 372 (399)
T KOG0296|consen 297 KLPLAACGSVDGTIAIYDLAASTLRHICE-HEDGVTKLKWLN--TDYLLTACANGKVRQWDARTGQLKFTY-TGHQMGIL 372 (399)
T ss_pred ccchhhcccccceEEEEecccchhheecc-CCCceEEEEEcC--cchheeeccCceEEeeeccccceEEEE-ecCchhee
Confidence 44677889999999999998776555554 888899999985 788999999999999999998876554 47999999
Q ss_pred EEEEcCCCCEEEEEECCCeEEEEecC
Q 005096 403 DLAWHPIGYLLCSGSNDHTTKFWCRN 428 (715)
Q Consensus 403 ~l~~spdg~~L~sgs~Dg~I~iWdl~ 428 (715)
+++++++.++++|+|.|++.+||++.
T Consensus 373 ~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 373 DFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred EEEEcCCCcEEEEecCCCeEEEEecC
Confidence 99999999999999999999999874
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=271.03 Aligned_cols=289 Identities=18% Similarity=0.317 Sum_probs=247.4
Q ss_pred eeehhhheeeEEEEEeccCCCccccccCchhhhcCccceeecCCCCCceeeeEEEEecCCCCccEEEEEEcCCCCEEEEE
Q 005096 83 DYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSFAAKFVHTSLNKNRCSINRVLWTPTGRRLITG 162 (715)
Q Consensus 83 ~~~~~~~~~~~irvW~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~~l~~spdg~~Latg 162 (715)
-++.+..-+.+||+|+..... +..++.....-|+.+.+++|++.||++
T Consensus 11 viLvsA~YDhTIRfWqa~tG~--------------------------------C~rTiqh~dsqVNrLeiTpdk~~LAaa 58 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGI--------------------------------CSRTIQHPDSQVNRLEITPDKKDLAAA 58 (311)
T ss_pred eEEEeccCcceeeeeehhcCe--------------------------------EEEEEecCccceeeEEEcCCcchhhhc
Confidence 366677788999999865433 334566677789999999999999999
Q ss_pred eCCCeEEEEeCCCCc--eEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCC
Q 005096 163 SQSGEFTLWNGQSFN--FEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTD 240 (715)
Q Consensus 163 s~dg~I~Iwd~~~~~--~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~ 240 (715)
+.- .|+|||+.+.+ .+.++.+|...|+++.|..+|+++++|++||+++|||++...+.+.+ .+...|+++..+++.
T Consensus 59 ~~q-hvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~-~~~spVn~vvlhpnQ 136 (311)
T KOG0315|consen 59 GNQ-HVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNY-QHNSPVNTVVLHPNQ 136 (311)
T ss_pred cCC-eeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhc-cCCCCcceEEecCCc
Confidence 876 59999998865 58899999999999999999999999999999999999986655554 567999999999999
Q ss_pred CEEEEEECCCcEEEEECCCCeeEEEec-ccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC------ceeEEeccCCC
Q 005096 241 LKFCSCSDDTTVKVWDFARCQEERSLT-GHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSG------RELCSFHGHKN 313 (715)
Q Consensus 241 ~~Las~s~Dg~V~iwdl~~~~~~~~l~-~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~------~~~~~~~~~~~ 313 (715)
..|++|..+|.|+|||+.+..+...+. .....|.++++.+||++|+.+...|++++|++-+. +.+.++..|..
T Consensus 137 teLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~ 216 (311)
T KOG0315|consen 137 TELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNG 216 (311)
T ss_pred ceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccc
Confidence 999999999999999998876655543 34467999999999999999999999999998654 34566788999
Q ss_pred ceEEEEEcCCCCEEEEEECCCeEEEEECCCC-eEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEE
Q 005096 314 MVLCVKWNQNGNWVLTASKDQIIKLYDIRAM-KELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVE 392 (715)
Q Consensus 314 ~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~-~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~ 392 (715)
.|..+.+|||+++|++++.|.+++||++++. +....+++|...+..++||. ++.||++++.|+.+++||+..++++..
T Consensus 217 ~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~-dg~YlvTassd~~~rlW~~~~~k~v~q 295 (311)
T KOG0315|consen 217 HILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSA-DGEYLVTASSDHTARLWDLSAGKEVRQ 295 (311)
T ss_pred eEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeecc-CccEEEecCCCCceeecccccCceeee
Confidence 9999999999999999999999999999988 66677889999999999999 899999999999999999988876654
Q ss_pred EeeccCCCEEEEEEc
Q 005096 393 IHNVHDNTVWDLAWH 407 (715)
Q Consensus 393 ~~~~h~~~V~~l~~s 407 (715)
.. +|.....|++..
T Consensus 296 y~-gh~K~~vc~~ln 309 (311)
T KOG0315|consen 296 YQ-GHHKAAVCVALN 309 (311)
T ss_pred cC-CcccccEEEEee
Confidence 44 565555566543
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-34 Score=279.00 Aligned_cols=286 Identities=17% Similarity=0.304 Sum_probs=248.1
Q ss_pred CCCCCcccchhhhhcccccccceEeeehhhheeeEEEEEeccCCCccccccCchhhhcCccceeecCCCCCceeeeEEEE
Q 005096 59 PPYDAHGDSFAAKRMRKLTQRRAVDYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSFAAKFVHT 138 (715)
Q Consensus 59 ~~~~~h~~~~~~~r~~~~~~~~~~~~~~~~~~~~~irvW~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 138 (715)
+.+.+|...|.+-.+.. +.+++.+...++.+.||+.....+..
T Consensus 49 r~LkGH~~Ki~~~~ws~-----Dsr~ivSaSqDGklIvWDs~TtnK~h-------------------------------- 91 (343)
T KOG0286|consen 49 RTLKGHLNKIYAMDWST-----DSRRIVSASQDGKLIVWDSFTTNKVH-------------------------------- 91 (343)
T ss_pred EEecccccceeeeEecC-----CcCeEEeeccCCeEEEEEccccccee--------------------------------
Confidence 44555554444433322 23345556667777788765443222
Q ss_pred ecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC------ceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEE
Q 005096 139 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSF------NFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKY 212 (715)
Q Consensus 139 ~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~------~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~i 212 (715)
.+.--...|..++|+|.|+++|+|+-|+...||++.+. +..+++.+|.+.+.|+.|.. +..|+|++.|.++.+
T Consensus 92 aipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCal 170 (343)
T KOG0286|consen 92 AIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCAL 170 (343)
T ss_pred EEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEE
Confidence 22234567999999999999999999999999998865 45677999999999999986 678899999999999
Q ss_pred EeCCCCceeeeecCCCCCeEEEEEec-CCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCC
Q 005096 213 WQNNMNNVKANKSAHKESVRDLSFCR-TDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKD 291 (715)
Q Consensus 213 wd~~~~~~~~~~~~h~~~I~~l~~sp-d~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~D 291 (715)
||++++..+..+.+|...|.+|+++| +++.+++|+-|+..+|||++.+..+..|.+|...|++|+|.|+|.-|++|++|
T Consensus 171 WDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD 250 (343)
T KOG0286|consen 171 WDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDD 250 (343)
T ss_pred EEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCC
Confidence 99999999999999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEECCCCceeEEecc--CCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCE
Q 005096 292 SLVKLWDAKSGRELCSFHG--HKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEY 369 (715)
Q Consensus 292 g~I~iwDl~s~~~~~~~~~--~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~ 369 (715)
+++++||+|....+..+.. ....|++++||..|++|++|..|.++.+||.-.++.+..+.+|+..|++|..++ ++.-
T Consensus 251 ~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~-DG~a 329 (343)
T KOG0286|consen 251 ATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSP-DGMA 329 (343)
T ss_pred ceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECC-CCcE
Confidence 9999999999988888763 345799999999999999999999999999999999999999999999999999 8999
Q ss_pred EEEEeCCCcEEEEE
Q 005096 370 FVSGSLDGSIFHWL 383 (715)
Q Consensus 370 l~sgs~DG~I~iwd 383 (715)
+++|+.|.+|+||.
T Consensus 330 v~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 330 VATGSWDSTLRIWA 343 (343)
T ss_pred EEecchhHheeecC
Confidence 99999999999994
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-34 Score=294.72 Aligned_cols=284 Identities=21% Similarity=0.445 Sum_probs=254.0
Q ss_pred CCccEEEEEEcCCCC-EEEEEeCCCeEEEEeCCC--CceEE--EEe----------ccCCCEEEEEEcCCCCEEEEEeCC
Q 005096 143 NRCSINRVLWTPTGR-RLITGSQSGEFTLWNGQS--FNFEM--ILQ----------AHDHAIRSMVWSHNDNWMVSGDDG 207 (715)
Q Consensus 143 H~~~I~~l~~spdg~-~Latgs~dg~I~Iwd~~~--~~~~~--~l~----------~h~~~V~~l~~spdg~~L~tgs~d 207 (715)
|...|.+++|+|-.. .|++++.|-..++|++.. ..... .++ ..+..|++++|+.+|++||+|+.|
T Consensus 177 ~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~~ 256 (524)
T KOG0273|consen 177 HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSED 256 (524)
T ss_pred CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEeecC
Confidence 999999999999766 899999999999999764 11111 111 123679999999999999999999
Q ss_pred CcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEE
Q 005096 208 GAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVS 287 (715)
Q Consensus 208 g~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~s 287 (715)
|.++||+.. +.++.++..|++.|.+|.|+.+|++|++++.|+++.+||..+++....+.-|.....+|.|-.+ ..|++
T Consensus 257 G~~riw~~~-G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~-~~F~t 334 (524)
T KOG0273|consen 257 GEARIWNKD-GNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSN-DEFAT 334 (524)
T ss_pred cEEEEEecC-chhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecC-ceEee
Confidence 999999865 6677788999999999999999999999999999999999999999999888877778999854 56899
Q ss_pred EeCCCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCC-
Q 005096 288 GGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFH- 366 (715)
Q Consensus 288 gs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~- 366 (715)
++.|+.|+++.+...+.+.++.+|.+.|.++.|++.+.+|++++.|++++||.+........+..|...|..+.|+|++
T Consensus 335 s~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~ 414 (524)
T KOG0273|consen 335 SSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGP 414 (524)
T ss_pred cCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999853
Q ss_pred -------CCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCC
Q 005096 367 -------EEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNR 429 (715)
Q Consensus 367 -------~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~ 429 (715)
+..|++++.|++|++||+..+..+..+ ..|..+|.+++|+++|++|++|+.||.|.||++..
T Consensus 415 v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f-~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~ 483 (524)
T KOG0273|consen 415 VTSNPNMNLMLASASFDSTVKLWDVESGVPIHTL-MKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKT 483 (524)
T ss_pred ccCCCcCCceEEEeecCCeEEEEEccCCceeEee-ccCCCceEEEEecCCCcEEEecCCCCeeEeccccc
Confidence 457999999999999999888877664 46999999999999999999999999999999865
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-33 Score=331.50 Aligned_cols=285 Identities=17% Similarity=0.317 Sum_probs=245.0
Q ss_pred ecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC----c----eEEEEeccCCCEEEEEEcCC-CCEEEEEeCCCc
Q 005096 139 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSF----N----FEMILQAHDHAIRSMVWSHN-DNWMVSGDDGGA 209 (715)
Q Consensus 139 ~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~----~----~~~~l~~h~~~V~~l~~spd-g~~L~tgs~dg~ 209 (715)
.+..|.+.|++++|++++++||+|+.|++|+|||+.+. . ....+. +...|.+++|++. +++|++++.||+
T Consensus 478 ~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~ 556 (793)
T PLN00181 478 DLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGV 556 (793)
T ss_pred cccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCe
Confidence 45669999999999999999999999999999997542 1 122222 3567999999874 789999999999
Q ss_pred EEEEeCCCCceeeeecCCCCCeEEEEEec-CCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEc-CCCCEEEE
Q 005096 210 IKYWQNNMNNVKANKSAHKESVRDLSFCR-TDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWH-PTKSLLVS 287 (715)
Q Consensus 210 I~iwd~~~~~~~~~~~~h~~~I~~l~~sp-d~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~s-pdg~~L~s 287 (715)
|+|||+.+++.+..+..|...|++++|++ ++.+|++++.|++|++||++++..+..+..+ ..|.++.|+ +++.+|++
T Consensus 557 v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~lat 635 (793)
T PLN00181 557 VQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAF 635 (793)
T ss_pred EEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEE
Confidence 99999999998889999999999999996 7889999999999999999998888887744 579999995 56899999
Q ss_pred EeCCCcEEEEECCCCc-eeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCC------CeEEEEeecCCCCeEEE
Q 005096 288 GGKDSLVKLWDAKSGR-ELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRA------MKELESFRGHRKDVTAL 360 (715)
Q Consensus 288 gs~Dg~I~iwDl~s~~-~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t------~~~~~~~~~h~~~V~~l 360 (715)
|+.|+.|++||+++.+ .+..+.+|...|+++.|. ++.+|++++.|+.|+|||++. .+.+..+.+|...+.++
T Consensus 636 gs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v 714 (793)
T PLN00181 636 GSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFV 714 (793)
T ss_pred EeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEE
Confidence 9999999999998765 466778899999999997 788999999999999999974 35678899999999999
Q ss_pred EEccCCCCEEEEEeCCCcEEEEEcCCCCceEEE------------eeccCCCEEEEEEcCCCCEEEEEECCCeEEEEec
Q 005096 361 AWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEI------------HNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCR 427 (715)
Q Consensus 361 ~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~------------~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl 427 (715)
+|++ ++.+|++|+.|+.|++|+.......... ...+...|.+++|++++..|++++.||.|+||++
T Consensus 715 ~~s~-~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 715 GLSV-SDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EEcC-CCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 9999 7889999999999999998655332211 1234567999999999999999999999999986
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-34 Score=308.17 Aligned_cols=346 Identities=22% Similarity=0.377 Sum_probs=283.7
Q ss_pred EeeehhhheeeEEEEEeccCCCccccccCch--hhhcCccceee------cCCCCCce---eeeEEEEecCCCCccEEEE
Q 005096 82 VDYTSTVVRYMQIRMWQRDSRDRTVLQATPA--AAIDMLPTVAY------TDNPSTSF---AAKFVHTSLNKNRCSINRV 150 (715)
Q Consensus 82 ~~~~~~~~~~~~irvW~~~~~~~~~~~~~~~--~~~~~l~~~~~------~~~~~~~~---~~~~~~~~l~~H~~~I~~l 150 (715)
..|+.+....+.+++|+..+.+....+.... .....+..... .......+ ..-.+.+.+-|..+.|.++
T Consensus 250 ~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm 329 (775)
T KOG0319|consen 250 GEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDM 329 (775)
T ss_pred ceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheee
Confidence 5678888888999999987766544443332 11111111100 00000000 0112345677889999999
Q ss_pred EEc-CCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc----eeeeec
Q 005096 151 LWT-PTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNN----VKANKS 225 (715)
Q Consensus 151 ~~s-pdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~----~~~~~~ 225 (715)
+|- ++.++||+++..+.+++|++.+..+. .+.+|+..|.++....+|.+|++|+.|.++++|.++.+. ++....
T Consensus 330 ~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~ 408 (775)
T KOG0319|consen 330 KFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQAN 408 (775)
T ss_pred eecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhc
Confidence 975 67789999999999999998887666 889999999999966677899999999999999885442 344557
Q ss_pred CCCCCeEEEEEecCC-CEEEEEECCCcEEEEECCCCeeE---E------EecccCCceEEEEEcCCCCEEEEEeCCCcEE
Q 005096 226 AHKESVRDLSFCRTD-LKFCSCSDDTTVKVWDFARCQEE---R------SLTGHGWDVKSVDWHPTKSLLVSGGKDSLVK 295 (715)
Q Consensus 226 ~h~~~I~~l~~spd~-~~Las~s~Dg~V~iwdl~~~~~~---~------~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~ 295 (715)
+|...|.+++++..+ .+|++++.|.+|++|++...+.. . ....|...|+|++++|+.++|+||+.|.+.+
T Consensus 409 gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaK 488 (775)
T KOG0319|consen 409 GHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAK 488 (775)
T ss_pred ccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEeccccccee
Confidence 899999999998755 67999999999999999662221 1 2346899999999999999999999999999
Q ss_pred EEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeC
Q 005096 296 LWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSL 375 (715)
Q Consensus 296 iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~ 375 (715)
||++.....+.++.+|+..|.|+.|++....+++++.|++|+||.+.++.++++|.+|...|..+.|.. ++..|++++.
T Consensus 489 iW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~-~~~qliS~~a 567 (775)
T KOG0319|consen 489 IWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIR-NGKQLISAGA 567 (775)
T ss_pred eecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeee-CCcEEEeccC
Confidence 999999999999999999999999999999999999999999999999999999999999999999998 8999999999
Q ss_pred CCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCCC
Q 005096 376 DGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRP 430 (715)
Q Consensus 376 DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~ 430 (715)
||.|++|+++++.++.. +..|.+.||+++.++....++||+.||.|.+|.-.+.
T Consensus 568 dGliKlWnikt~eC~~t-lD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~Te 621 (775)
T KOG0319|consen 568 DGLIKLWNIKTNECEMT-LDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDVTE 621 (775)
T ss_pred CCcEEEEeccchhhhhh-hhhccceeEEEeecCccceeEecCCCeEEEEeecCcH
Confidence 99999999988877654 4579999999999999999999999999999975443
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=292.84 Aligned_cols=291 Identities=17% Similarity=0.342 Sum_probs=250.3
Q ss_pred EEecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCC---CceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 005096 137 HTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQS---FNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYW 213 (715)
Q Consensus 137 ~~~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~---~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iw 213 (715)
...+..|.+.|.-+.||++|++||+++.|.+..||++.. .++.+++.+|...|.-+.||||+++|++|+.|..+.+|
T Consensus 217 ~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lw 296 (519)
T KOG0293|consen 217 WQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLW 296 (519)
T ss_pred hhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeec
Confidence 456889999999999999999999999999999998554 45688899999999999999999999999999999999
Q ss_pred eCCCCceeeeec-CCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecc-cCCceEEEEEcCCCCEEEEEeCC
Q 005096 214 QNNMNNVKANKS-AHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTG-HGWDVKSVDWHPTKSLLVSGGKD 291 (715)
Q Consensus 214 d~~~~~~~~~~~-~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~-~~~~I~si~~spdg~~L~sgs~D 291 (715)
|+.++++...+. ++...+.+++|+||+..+++|+.|++|..||++.. .+....+ ..-.|.+++.++||+++++.+.|
T Consensus 297 Dv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn-~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d 375 (519)
T KOG0293|consen 297 DVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGN-ILGNWEGVRDPKVHDLAITYDGKYVLLVTVD 375 (519)
T ss_pred cCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcc-hhhcccccccceeEEEEEcCCCcEEEEEecc
Confidence 999998776664 34688999999999999999999999999998654 3333333 23569999999999999999999
Q ss_pred CcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCC--eEEEEEccCCCCE
Q 005096 292 SLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKD--VTALAWHPFHEEY 369 (715)
Q Consensus 292 g~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~--V~~l~~sp~~~~~ 369 (715)
..|++|+.++...+..+. ....|+++++|.|++++++.-.+..|++||++..+.+..+.+|+.. |..-+|.-.+..+
T Consensus 376 ~~i~l~~~e~~~dr~lis-e~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~f 454 (519)
T KOG0293|consen 376 KKIRLYNREARVDRGLIS-EEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKF 454 (519)
T ss_pred cceeeechhhhhhhcccc-ccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcce
Confidence 999999998766554444 4667999999999999999999999999999999999999998865 4444565546689
Q ss_pred EEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCC-CCEEEEEECCCeEEEEecCCC
Q 005096 370 FVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPI-GYLLCSGSNDHTTKFWCRNRP 430 (715)
Q Consensus 370 l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd-g~~L~sgs~Dg~I~iWdl~~~ 430 (715)
+++|++|+.|+||+..+++.+ ..+.+|...|+|++|+|. -..+|++++||+||||.....
T Consensus 455 iaSGSED~kvyIWhr~sgkll-~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~~ 515 (519)
T KOG0293|consen 455 IASGSEDSKVYIWHRISGKLL-AVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSDN 515 (519)
T ss_pred EEecCCCceEEEEEccCCcee-EeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCcc
Confidence 999999999999999877655 556689999999999996 478999999999999987643
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-34 Score=269.35 Aligned_cols=281 Identities=23% Similarity=0.358 Sum_probs=250.7
Q ss_pred ecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 005096 139 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN 218 (715)
Q Consensus 139 ~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~ 218 (715)
.|..|.+.|+++.|+-||+|.++++.|.+|++||...+.+++++.+|...|..++.+.|+..|++|+.|..|.+||++++
T Consensus 12 ~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TG 91 (307)
T KOG0316|consen 12 ILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTG 91 (307)
T ss_pred eecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccC
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCC--CeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEE
Q 005096 219 NVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFAR--CQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKL 296 (715)
Q Consensus 219 ~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~--~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~i 296 (715)
+..+.+.+|...|+.+.|+.+...+++|+.|.+|++||.++ .+.+..+....+.|.+|.++ +..|++|+.||+++.
T Consensus 92 kv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGtvRt 169 (307)
T KOG0316|consen 92 KVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVRT 169 (307)
T ss_pred eeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCCcEEE
Confidence 99999999999999999999999999999999999999965 45677888888899999997 678999999999999
Q ss_pred EECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEE--EEccCCCCEEEEEe
Q 005096 297 WDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTAL--AWHPFHEEYFVSGS 374 (715)
Q Consensus 297 wDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l--~~sp~~~~~l~sgs 374 (715)
||++.|+....+- ..+|+|++|++|++.+++++.|++|++.|-.+++.+..+++|...-..+ +++. ....+++|+
T Consensus 170 ydiR~G~l~sDy~--g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~q-sdthV~sgS 246 (307)
T KOG0316|consen 170 YDIRKGTLSSDYF--GHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQ-SDTHVFSGS 246 (307)
T ss_pred EEeecceeehhhc--CCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecc-cceeEEecc
Confidence 9999998766654 4569999999999999999999999999999999999999998875544 4444 677899999
Q ss_pred CCCcEEEEEcCCCCceEEEeeccCCC-EEEEEEcCCCCEEEEEECCCeEEEEe
Q 005096 375 LDGSIFHWLVGHETPQVEIHNVHDNT-VWDLAWHPIGYLLCSGSNDHTTKFWC 426 (715)
Q Consensus 375 ~DG~I~iwd~~~~~~~~~~~~~h~~~-V~~l~~spdg~~L~sgs~Dg~I~iWd 426 (715)
+||.|++||+.....+.++.. +... |.+++++|....|+++. ++.+.+|.
T Consensus 247 EDG~Vy~wdLvd~~~~sk~~~-~~~v~v~dl~~hp~~~~f~~A~-~~~~~~~~ 297 (307)
T KOG0316|consen 247 EDGKVYFWDLVDETQISKLSV-VSTVIVTDLSCHPTMDDFITAT-GHGDLFWY 297 (307)
T ss_pred CCceEEEEEeccceeeeeecc-CCceeEEeeecccCccceeEec-CCceecee
Confidence 999999999988776666554 4444 89999999977777776 45566664
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=289.48 Aligned_cols=270 Identities=24% Similarity=0.468 Sum_probs=251.1
Q ss_pred EeeehhhheeeEEEEEeccCCCccccccCchhhhcCccceeecCCCCCceeeeEEEEecCCCCccEEEEEEcCCCCEEEE
Q 005096 82 VDYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSFAAKFVHTSLNKNRCSINRVLWTPTGRRLIT 161 (715)
Q Consensus 82 ~~~~~~~~~~~~irvW~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~~l~~spdg~~Lat 161 (715)
.....+..++.+|++|++...+. ...|++|.+.|.+|+|+..|++||+
T Consensus 120 ~~~v~~as~d~tikv~D~~tg~~--------------------------------e~~LrGHt~sv~di~~~a~Gk~l~t 167 (406)
T KOG0295|consen 120 EALVVSASEDATIKVFDTETGEL--------------------------------ERSLRGHTDSVFDISFDASGKYLAT 167 (406)
T ss_pred ceEEEEecCCceEEEEEccchhh--------------------------------hhhhhccccceeEEEEecCccEEEe
Confidence 34445566789999998765541 2368999999999999999999999
Q ss_pred EeCCCeEEEEeCCC-CceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCC
Q 005096 162 GSQSGEFTLWNGQS-FNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTD 240 (715)
Q Consensus 162 gs~dg~I~Iwd~~~-~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~ 240 (715)
++.|=.+++||.++ .++++.+.+|+..|.+++|-|.|++|++++.|.+|+.|++.++.++.++.+|.+.|..++.+.||
T Consensus 168 cSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DG 247 (406)
T KOG0295|consen 168 CSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDG 247 (406)
T ss_pred cCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCe
Confidence 99999999999887 67888899999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCC---------------CCEEEEEeCCCcEEEEECCCCcee
Q 005096 241 LKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPT---------------KSLLVSGGKDSLVKLWDAKSGREL 305 (715)
Q Consensus 241 ~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spd---------------g~~L~sgs~Dg~I~iwDl~s~~~~ 305 (715)
.++++++.|.+|++|-+.+..+...+..|+..|.+++|-+. +.++++++.|++|++||+.++.++
T Consensus 248 ti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL 327 (406)
T KOG0295|consen 248 TIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCL 327 (406)
T ss_pred eEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEE
Confidence 99999999999999999999999999999999999999763 248999999999999999999999
Q ss_pred EEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEc
Q 005096 306 CSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLV 384 (715)
Q Consensus 306 ~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~ 384 (715)
.++.+|.++|..++|+|.|+||+++.+|++|++||+++.++.+.+..|..-|+++.|+. +..++++|+-|-.+++|..
T Consensus 328 ~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~-~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 328 FTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHK-TAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred EEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCC-CCceEEeccccceeeeeec
Confidence 99999999999999999999999999999999999999999999999999999999998 7789999999999999974
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-33 Score=298.98 Aligned_cols=343 Identities=22% Similarity=0.346 Sum_probs=295.8
Q ss_pred CCCCCCCCCCCCCcccchhhhhcccccccceEeeehhhheeeEEEEEeccCCCccccccCchhhhcCccceeecCCCCCc
Q 005096 51 EFHHLPSNPPYDAHGDSFAAKRMRKLTQRRAVDYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTS 130 (715)
Q Consensus 51 ~~~~~p~~~~~~~h~~~~~~~r~~~~~~~~~~~~~~~~~~~~~irvW~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 130 (715)
+++++-.++.+.+|-+.+....+ ..+.+++.+..|+...|+|..+..+.
T Consensus 131 ~~~pFvl~r~~~g~fddi~si~W-----s~DSr~l~~gsrD~s~rl~~v~~~k~-------------------------- 179 (893)
T KOG0291|consen 131 EFNPFVLHRTYLGHFDDITSIDW-----SDDSRLLVTGSRDLSARLFGVDGNKN-------------------------- 179 (893)
T ss_pred ccCcceEeeeecCCccceeEEEe-----ccCCceEEeccccceEEEEEeccccc--------------------------
Confidence 45667778888888777765443 23566777888999999998765442
Q ss_pred eeeeEEEEecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCC-----------------------Cce------EEE
Q 005096 131 FAAKFVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQS-----------------------FNF------EMI 181 (715)
Q Consensus 131 ~~~~~~~~~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~-----------------------~~~------~~~ 181 (715)
+....+.+|++.|.++-|..+...|+|.+.||.|.+|.... ++. ...
T Consensus 180 ----~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k 255 (893)
T KOG0291|consen 180 ----LFTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYK 255 (893)
T ss_pred ----cceEeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEE
Confidence 22346889999999999999999999999999999997651 110 001
Q ss_pred -----EeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECC-CcEEEE
Q 005096 182 -----LQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDD-TTVKVW 255 (715)
Q Consensus 182 -----l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~D-g~V~iw 255 (715)
+......|++.+|++..+.|+++-..|...+|++....++..+......|..++|+..|..|+.++.. |.+.||
T Consensus 256 ~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVw 335 (893)
T KOG0291|consen 256 TKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVW 335 (893)
T ss_pred EEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEE
Confidence 11223679999999999999999999999999999999999999888999999999999999998764 899999
Q ss_pred ECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCe
Q 005096 256 DFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQI 335 (715)
Q Consensus 256 dl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~ 335 (715)
++.+...+.+..+|...+++++++|||.++++|++||+|+|||..++-|+.+|..|++.|+.+.|+.+++.|++.+.||+
T Consensus 336 eWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGt 415 (893)
T KOG0291|consen 336 EWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGT 415 (893)
T ss_pred EeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCe
Confidence 99998888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCCCeEEEEeecCC-CCeEEEEEccCCCCEEEEEeCCC-cEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEE
Q 005096 336 IKLYDIRAMKELESFRGHR-KDVTALAWHPFHEEYFVSGSLDG-SIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLL 413 (715)
Q Consensus 336 I~iwDl~t~~~~~~~~~h~-~~V~~l~~sp~~~~~l~sgs~DG-~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L 413 (715)
|+.||+...+..++|.... ....|++..+ .+.++++|+.|. .|++|++.++..+ .++.+|+++|.+++|++++..|
T Consensus 416 VRAwDlkRYrNfRTft~P~p~QfscvavD~-sGelV~AG~~d~F~IfvWS~qTGqll-DiLsGHEgPVs~l~f~~~~~~L 493 (893)
T KOG0291|consen 416 VRAWDLKRYRNFRTFTSPEPIQFSCVAVDP-SGELVCAGAQDSFEIFVWSVQTGQLL-DILSGHEGPVSGLSFSPDGSLL 493 (893)
T ss_pred EEeeeecccceeeeecCCCceeeeEEEEcC-CCCEEEeeccceEEEEEEEeecCeee-ehhcCCCCcceeeEEccccCeE
Confidence 9999999999999998654 4578889988 788999998887 4999999888654 6777899999999999999999
Q ss_pred EEEECCCeEEEEecCCC
Q 005096 414 CSGSNDHTTKFWCRNRP 430 (715)
Q Consensus 414 ~sgs~Dg~I~iWdl~~~ 430 (715)
+++|.|.+||+||+=..
T Consensus 494 aS~SWDkTVRiW~if~s 510 (893)
T KOG0291|consen 494 ASGSWDKTVRIWDIFSS 510 (893)
T ss_pred EeccccceEEEEEeecc
Confidence 99999999999998544
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-34 Score=312.48 Aligned_cols=252 Identities=24% Similarity=0.454 Sum_probs=231.8
Q ss_pred EEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC-------------------------------ceeeeecCCC
Q 005096 180 MILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN-------------------------------NVKANKSAHK 228 (715)
Q Consensus 180 ~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~-------------------------------~~~~~~~~h~ 228 (715)
.++......++|..|+.|+++||.|..|..|++|.+... ....++.+|.
T Consensus 372 YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~ 451 (707)
T KOG0263|consen 372 YTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHS 451 (707)
T ss_pred EEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCC
Confidence 344445678999999999999999999999999986521 1233457899
Q ss_pred CCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEe
Q 005096 229 ESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSF 308 (715)
Q Consensus 229 ~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~ 308 (715)
+.|..+.|+|+.++|++|+.|++||+|.+.+..++..+.+|...|+++.|+|.|-+||+++.|++-++|.......++.+
T Consensus 452 GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRif 531 (707)
T KOG0263|consen 452 GPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIF 531 (707)
T ss_pred CceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCC
Q 005096 309 HGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHET 388 (715)
Q Consensus 309 ~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~ 388 (715)
.+|.+.|.|+.|+|+.+|+++|+.|.+|++||+.+|..++.|.+|.+.|++|+|+| ++++|++|+.||.|+|||+.++.
T Consensus 532 aghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp-~Gr~LaSg~ed~~I~iWDl~~~~ 610 (707)
T KOG0263|consen 532 AGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSP-CGRYLASGDEDGLIKIWDLANGS 610 (707)
T ss_pred cccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcC-CCceEeecccCCcEEEEEcCCCc
Confidence 99999999999999999999999999999999999999999999999999999999 99999999999999999999887
Q ss_pred ceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCCCCCc
Q 005096 389 PQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGDT 433 (715)
Q Consensus 389 ~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~~~ 433 (715)
.+..+. +|.+.|.++.|+.||.+||+++.|++|++||+......
T Consensus 611 ~v~~l~-~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~ 654 (707)
T KOG0263|consen 611 LVKQLK-GHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIEL 654 (707)
T ss_pred chhhhh-cccCceeEEEEecCCCEEEecCCCCeEEEEEchhhccc
Confidence 766555 58999999999999999999999999999998654443
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=299.48 Aligned_cols=285 Identities=22% Similarity=0.415 Sum_probs=262.4
Q ss_pred EecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 005096 138 TSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNM 217 (715)
Q Consensus 138 ~~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~ 217 (715)
+.+..|+.+|.+|.|+|...+++++-.+|.|.|||.++...++.+...+.+|++..|-...+++++|++|..|+||+.++
T Consensus 7 rk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt 86 (794)
T KOG0276|consen 7 RKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNT 86 (794)
T ss_pred hHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEeccc
Confidence 34566999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCC-CeeEEEecccCCceEEEEEcCC-CCEEEEEeCCCcEE
Q 005096 218 NNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFAR-CQEERSLTGHGWDVKSVDWHPT-KSLLVSGGKDSLVK 295 (715)
Q Consensus 218 ~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~-~~~~~~l~~~~~~I~si~~spd-g~~L~sgs~Dg~I~ 295 (715)
.+.+..+..|.+.|++|+.+|..-+++++++|-+|++||.+. ..+..++.+|..-|.+|+|+|. .+.+++++-|++|+
T Consensus 87 ~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVK 166 (794)
T KOG0276|consen 87 GEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVK 166 (794)
T ss_pred ceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEE
Confidence 999999999999999999999999999999999999999964 5678899999999999999995 56999999999999
Q ss_pred EEECCCCceeEEeccCCCceEEEEEcC--CCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEE
Q 005096 296 LWDAKSGRELCSFHGHKNMVLCVKWNQ--NGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSG 373 (715)
Q Consensus 296 iwDl~s~~~~~~~~~~~~~I~sl~~sp--dg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sg 373 (715)
||.+.+..+..++++|...|+|+.|-+ |.-+|++|+.|.+|+|||..+..++.++.+|...|+.+.|+| .-.+|++|
T Consensus 167 VWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp-~lpiiisg 245 (794)
T KOG0276|consen 167 VWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHP-ELPIIISG 245 (794)
T ss_pred EEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecC-CCcEEEEe
Confidence 999999999999999999999999987 446999999999999999999999999999999999999999 88999999
Q ss_pred eCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEE
Q 005096 374 SLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKF 424 (715)
Q Consensus 374 s~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~i 424 (715)
++||+|+||+..+-+....+. ..-+.|+|++-...+..+++|.++|.|.|
T Consensus 246 sEDGTvriWhs~Ty~lE~tLn-~gleRvW~I~~~k~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 246 SEDGTVRIWNSKTYKLEKTLN-YGLERVWCIAAHKGDGKIAVGFDEGSVTV 295 (794)
T ss_pred cCCccEEEecCcceehhhhhh-cCCceEEEEeecCCCCeEEEeccCCcEEE
Confidence 999999999987655443333 34678999999998888999888877654
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-33 Score=280.62 Aligned_cols=253 Identities=28% Similarity=0.497 Sum_probs=237.7
Q ss_pred CceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEE
Q 005096 176 FNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVW 255 (715)
Q Consensus 176 ~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iw 255 (715)
.++.+.+.+|.+.|.|+++.|.+.+|++|+.|++|+|||+.++.++.++.+|...|..++++....||++++.|+.|+.|
T Consensus 141 wKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCw 220 (460)
T KOG0285|consen 141 WKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCW 220 (460)
T ss_pred ceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEE
Confidence 45677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCe
Q 005096 256 DFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQI 335 (715)
Q Consensus 256 dl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~ 335 (715)
|++..+.++.+.+|-..|.|++.+|.-+.|++|+.|.+++|||+++...+..+.+|...|.++.+.+-.-.+++|+.|++
T Consensus 221 DLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~t 300 (460)
T KOG0285|consen 221 DLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDST 300 (460)
T ss_pred echhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999997778999999999
Q ss_pred EEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEE
Q 005096 336 IKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCS 415 (715)
Q Consensus 336 I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~s 415 (715)
|++||++.++....+..|+..|.+++.+| ....|++++.| .|+-|++-.+..+.. +.+|...|++++.+.|+ ++++
T Consensus 301 vrlWDl~agkt~~tlt~hkksvral~lhP-~e~~fASas~d-nik~w~~p~g~f~~n-lsgh~~iintl~~nsD~-v~~~ 376 (460)
T KOG0285|consen 301 VRLWDLRAGKTMITLTHHKKSVRALCLHP-KENLFASASPD-NIKQWKLPEGEFLQN-LSGHNAIINTLSVNSDG-VLVS 376 (460)
T ss_pred EEEeeeccCceeEeeecccceeeEEecCC-chhhhhccCCc-cceeccCCccchhhc-cccccceeeeeeeccCc-eEEE
Confidence 99999999999999999999999999999 88889998887 789999988876666 66799999999998776 7889
Q ss_pred EECCCeEEEEecCCCCC
Q 005096 416 GSNDHTTKFWCRNRPGD 432 (715)
Q Consensus 416 gs~Dg~I~iWdl~~~~~ 432 (715)
|+++|.+.+||.+..-.
T Consensus 377 G~dng~~~fwdwksg~n 393 (460)
T KOG0285|consen 377 GGDNGSIMFWDWKSGHN 393 (460)
T ss_pred cCCceEEEEEecCcCcc
Confidence 99999999999976444
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-32 Score=278.31 Aligned_cols=281 Identities=25% Similarity=0.423 Sum_probs=246.4
Q ss_pred CCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCC---CEEEEEeCCCcEEEEeCCCC
Q 005096 142 KNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHND---NWMVSGDDGGAIKYWQNNMN 218 (715)
Q Consensus 142 ~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg---~~L~tgs~dg~I~iwd~~~~ 218 (715)
-|.+.|.+|... +++|++|++||.++|||.+ ++..+.+.+|.+.|.+++|.-.+ ..|++++.|.++++|.++.+
T Consensus 103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~-Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~ 179 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDLK-GKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVG 179 (423)
T ss_pred cchhhhhhhccc--CceEEEeecCCeeEEEecC-CceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCc
Confidence 488999999988 7899999999999999965 78899999999999999885433 35999999999999998876
Q ss_pred cee----eeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCC-------------------------CeeEEEeccc
Q 005096 219 NVK----ANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFAR-------------------------CQEERSLTGH 269 (715)
Q Consensus 219 ~~~----~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~-------------------------~~~~~~l~~~ 269 (715)
+.. ....+|+..|.+++...++..+++++.|.+|+||+.++ ...+..+.+|
T Consensus 180 ~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GH 259 (423)
T KOG0313|consen 180 ENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGH 259 (423)
T ss_pred hhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEeccc
Confidence 432 23358999999999999999999999999999999321 1234567899
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCe---E
Q 005096 270 GWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMK---E 346 (715)
Q Consensus 270 ~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~---~ 346 (715)
...|.+|.|+. ...+++++.|.+|+.||+.++.++.++. ....++|+.+++..++|++|+.|..|++||-|++. .
T Consensus 260 t~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~-~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v 337 (423)
T KOG0313|consen 260 TEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLT-TNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVV 337 (423)
T ss_pred ccceeeEEEcC-CCceEeecccceEEEEEeecccceeeee-cCcceeEeecccccceeeecCCCCceeecCCCCCCCcee
Confidence 99999999997 6789999999999999999999988887 45679999999999999999999999999998753 3
Q ss_pred EEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEe
Q 005096 347 LESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWC 426 (715)
Q Consensus 347 ~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWd 426 (715)
...|.+|...|.++.|+|.+...|++++.|+++++||+++.+..+..+.+|.+.|.++.|+ ++.+|++|+.|.+|+|+.
T Consensus 338 ~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~~ 416 (423)
T KOG0313|consen 338 SQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN-EGGLIVSGGADNKLRIFK 416 (423)
T ss_pred EEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc-CCceEEeccCcceEEEec
Confidence 5778899999999999999999999999999999999999986666677899999999998 566899999999999997
Q ss_pred cC
Q 005096 427 RN 428 (715)
Q Consensus 427 l~ 428 (715)
-.
T Consensus 417 ~~ 418 (423)
T KOG0313|consen 417 GS 418 (423)
T ss_pred cc
Confidence 53
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-34 Score=296.65 Aligned_cols=292 Identities=17% Similarity=0.348 Sum_probs=256.7
Q ss_pred eeeEEEEecCCCCccEEEEEEcC-CCCEEEEEeCCCeEEEEeCCC-CceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCc
Q 005096 132 AAKFVHTSLNKNRCSINRVLWTP-TGRRLITGSQSGEFTLWNGQS-FNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGA 209 (715)
Q Consensus 132 ~~~~~~~~l~~H~~~I~~l~~sp-dg~~Latgs~dg~I~Iwd~~~-~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~ 209 (715)
..+-+...+.+|+..|+++.|.+ .+.+|++++.|+.|+||++-. +++++++.+|...|.+++|+.+|..|++++.|+.
T Consensus 202 ~Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~ 281 (503)
T KOG0282|consen 202 LPKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRF 281 (503)
T ss_pred ccHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeeccee
Confidence 34455678999999999999999 889999999999999999776 8899999999999999999999999999999999
Q ss_pred EEEEeCCCCceeeeecCCCCCeEEEEEecCC-CEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEE
Q 005096 210 IKYWQNNMNNVKANKSAHKESVRDLSFCRTD-LKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSG 288 (715)
Q Consensus 210 I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~-~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sg 288 (715)
|++||++++.++..+. ....+.|+.|.+|+ +.|++|+.|+.|+.||+++++.+..+..|.+.|..|.|-++++++++.
T Consensus 282 lKlwDtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFiss 360 (503)
T KOG0282|consen 282 LKLWDTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISS 360 (503)
T ss_pred eeeeccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeee
Confidence 9999999999988874 45678999999998 889999999999999999999999999999999999999999999999
Q ss_pred eCCCcEEEEECCCCceeEEec-cCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCC---eEEEEeecCCC--CeEEEEE
Q 005096 289 GKDSLVKLWDAKSGRELCSFH-GHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAM---KELESFRGHRK--DVTALAW 362 (715)
Q Consensus 289 s~Dg~I~iwDl~s~~~~~~~~-~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~---~~~~~~~~h~~--~V~~l~~ 362 (715)
++|+.++||+.+....+..+. .......||..+|+++++++-+.|+.|.||.+... ...+.|++|.. .-..+.|
T Consensus 361 SDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~f 440 (503)
T KOG0282|consen 361 SDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDF 440 (503)
T ss_pred ccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEE
Confidence 999999999998876554432 23345778999999999999999999999987542 23455667654 4567899
Q ss_pred ccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCC-CCEEEEEECCCeEEEEe
Q 005096 363 HPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPI-GYLLCSGSNDHTTKFWC 426 (715)
Q Consensus 363 sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd-g~~L~sgs~Dg~I~iWd 426 (715)
|| ++.+|++|+.||.+.+||.++.+... .+..|+..+..+.|+|. ...|||++.||.|++|+
T Consensus 441 Sp-DG~~l~SGdsdG~v~~wdwkt~kl~~-~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 441 SP-DGRTLCSGDSDGKVNFWDWKTTKLVS-KLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred cC-CCCeEEeecCCccEEEeechhhhhhh-ccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 99 99999999999999999998876554 44578999999999997 57899999999999996
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-33 Score=299.80 Aligned_cols=320 Identities=19% Similarity=0.268 Sum_probs=260.1
Q ss_pred eeeEEEEecCCCCccEEEEEEcCCCC--EEEEEeCCCeEEEEeCCCCce-EEEEeccCCCEEEEEEcCCCCEEEEEeCCC
Q 005096 132 AAKFVHTSLNKNRCSINRVLWTPTGR--RLITGSQSGEFTLWNGQSFNF-EMILQAHDHAIRSMVWSHNDNWMVSGDDGG 208 (715)
Q Consensus 132 ~~~~~~~~l~~H~~~I~~l~~spdg~--~Latgs~dg~I~Iwd~~~~~~-~~~l~~h~~~V~~l~~spdg~~L~tgs~dg 208 (715)
...++...++||.+.|.++.|+++-+ .|++|..|+.|++||+.+... +..+..|.+.|++++|++|+..++++++|.
T Consensus 135 ~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDk 214 (775)
T KOG0319|consen 135 KNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDK 214 (775)
T ss_pred eCCEEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCc
Confidence 34456778999999999999999765 488999999999999996554 777888999999999999999899999999
Q ss_pred cEEEEeCCCCc---------------------------------------------------------------------
Q 005096 209 AIKYWQNNMNN--------------------------------------------------------------------- 219 (715)
Q Consensus 209 ~I~iwd~~~~~--------------------------------------------------------------------- 219 (715)
.|.|||+...+
T Consensus 215 vi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~ 294 (775)
T KOG0319|consen 215 VIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMS 294 (775)
T ss_pred EEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccC
Confidence 99999851000
Q ss_pred --------------------------------------------------------------eeeeecCCCCCeEEEEEe
Q 005096 220 --------------------------------------------------------------VKANKSAHKESVRDLSFC 237 (715)
Q Consensus 220 --------------------------------------------------------------~~~~~~~h~~~I~~l~~s 237 (715)
....+.+|++.|.+++..
T Consensus 295 ~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~ 374 (775)
T KOG0319|consen 295 QLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVW 374 (775)
T ss_pred ceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeec
Confidence 000112567777777755
Q ss_pred cCCCEEEEEECCCcEEEEECCCCe----eEEEecccCCceEEEEEcCCC-CEEEEEeCCCcEEEEECCCCce---eE---
Q 005096 238 RTDLKFCSCSDDTTVKVWDFARCQ----EERSLTGHGWDVKSVDWHPTK-SLLVSGGKDSLVKLWDAKSGRE---LC--- 306 (715)
Q Consensus 238 pd~~~Las~s~Dg~V~iwdl~~~~----~~~~l~~~~~~I~si~~spdg-~~L~sgs~Dg~I~iwDl~s~~~---~~--- 306 (715)
.+|.+|++|+.|.++++|.+++.. ++....+|.+.|.+|+++..+ .+|++++.|++|++|++...+. ..
T Consensus 375 ~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~ 454 (775)
T KOG0319|consen 375 SSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLT 454 (775)
T ss_pred ccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceeh
Confidence 677899999999999999884432 334567899999999997655 4899999999999999976221 11
Q ss_pred ---EeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEE
Q 005096 307 ---SFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWL 383 (715)
Q Consensus 307 ---~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd 383 (715)
....|...|+|++++++.++|++|+.|++.+||++.....+.++.+|...|.++.|++ .+.+++|+|.|++|+||.
T Consensus 455 ~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~-~dq~laT~SgD~TvKIW~ 533 (775)
T KOG0319|consen 455 CRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSK-NDQLLATCSGDKTVKIWS 533 (775)
T ss_pred hhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEecc-ccceeEeccCCceEEEEE
Confidence 2246899999999999999999999999999999999999999999999999999999 899999999999999999
Q ss_pred cCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCCCCCcccccccccCCccccceeeEEeecCCCC
Q 005096 384 VGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGDTARDKFNMGQNQGYGEQNAVFAGRMPGN 460 (715)
Q Consensus 384 ~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 460 (715)
+.+..+. +.+.+|...|..+.|-.++..|++++.||.|+||++++..-... ...+.++...+.......
T Consensus 534 is~fSCl-kT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~t-------lD~H~DrvWaL~~~~~~~ 602 (775)
T KOG0319|consen 534 ISTFSCL-KTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMT-------LDAHNDRVWALSVSPLLD 602 (775)
T ss_pred eccceee-eeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhh-------hhhccceeEEEeecCccc
Confidence 9776654 55668999999999999999999999999999999976444332 233445555555555443
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-33 Score=285.09 Aligned_cols=272 Identities=20% Similarity=0.361 Sum_probs=233.3
Q ss_pred cCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEE
Q 005096 185 HDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEER 264 (715)
Q Consensus 185 h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~ 264 (715)
-+..|..|.|.++|+.|++|+..|.+.+|+..+......+..|+..|+++.|+.++.++++|+.+|.|++|+.+-.....
T Consensus 95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~ 174 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKI 174 (464)
T ss_pred cccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHH
Confidence 35679999999999999999999999999988777777788999999999999999999999999999999986543333
Q ss_pred EecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCC
Q 005096 265 SLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAM 344 (715)
Q Consensus 265 ~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~ 344 (715)
....|...|++++|+|++..|+++++||+|+|||....+..+.+.+|...|.|+.|+|...+|++++.|..|++||.+++
T Consensus 175 ~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg 254 (464)
T KOG0284|consen 175 IQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSG 254 (464)
T ss_pred hhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCc
Confidence 33445589999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred eEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCC-CCEEEEEECCCeEE
Q 005096 345 KELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPI-GYLLCSGSNDHTTK 423 (715)
Q Consensus 345 ~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd-g~~L~sgs~Dg~I~ 423 (715)
.++.++..|+..|..+.|++ ++++|++++.|..++++|+++-+++ ....+|+..|+++.|+|- ..+|++|+.||.|.
T Consensus 255 ~cl~tlh~HKntVl~~~f~~-n~N~Llt~skD~~~kv~DiR~mkEl-~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvv 332 (464)
T KOG0284|consen 255 SCLATLHGHKNTVLAVKFNP-NGNWLLTGSKDQSCKVFDIRTMKEL-FTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVV 332 (464)
T ss_pred chhhhhhhccceEEEEEEcC-CCCeeEEccCCceEEEEehhHhHHH-HHhhcchhhheeeccccccccceeeccCCCceE
Confidence 99999999999999999999 7799999999999999999955544 445579999999999996 67899999999999
Q ss_pred EEecCCCCCcccccccccCCccccceeeEEeecCCCCccCC
Q 005096 424 FWCRNRPGDTARDKFNMGQNQGYGEQNAVFAGRMPGNFPLP 464 (715)
Q Consensus 424 iWdl~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 464 (715)
.|.+........- ..+++.....+++...|++++.
T Consensus 333 h~~v~~~~p~~~i------~~AHd~~iwsl~~hPlGhil~t 367 (464)
T KOG0284|consen 333 HWVVGLEEPLGEI------PPAHDGEIWSLAYHPLGHILAT 367 (464)
T ss_pred EEeccccccccCC------CcccccceeeeeccccceeEee
Confidence 9999733222211 1233444555555555555554
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-34 Score=285.38 Aligned_cols=239 Identities=25% Similarity=0.471 Sum_probs=216.5
Q ss_pred EecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 005096 138 TSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNM 217 (715)
Q Consensus 138 ~~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~ 217 (715)
..|.||+++|.|+.|. .+.|++|++|.+|+|||+++++.++++..|...|..+.|+ +.++++++.|.+|.|||+..
T Consensus 231 ~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~s 306 (499)
T KOG0281|consen 231 KILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMAS 306 (499)
T ss_pred HhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccC
Confidence 4678999999999994 5699999999999999999999999999999999999997 56999999999999999876
Q ss_pred Cc---eeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcE
Q 005096 218 NN---VKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLV 294 (715)
Q Consensus 218 ~~---~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I 294 (715)
.. +...+.+|...|+.+.| ++++|++++.|.+|++|++.+++.++++.+|...|.|+.+. ++++++|+.|.+|
T Consensus 307 ps~it~rrVLvGHrAaVNvVdf--d~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQYr--~rlvVSGSSDntI 382 (499)
T KOG0281|consen 307 PTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTI 382 (499)
T ss_pred chHHHHHHHHhhhhhheeeecc--ccceEEEecCCceEEEEeccceeeehhhhcccccceehhcc--CeEEEecCCCceE
Confidence 53 44556899999999999 56799999999999999999999999999999999999886 8999999999999
Q ss_pred EEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCe---------EEEEeecCCCCeEEEEEccC
Q 005096 295 KLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMK---------ELESFRGHRKDVTALAWHPF 365 (715)
Q Consensus 295 ~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~---------~~~~~~~h~~~V~~l~~sp~ 365 (715)
++||+..|++++.+++|..-|.||.|. .+.|++|+.||+|+|||+.++. ++..+..|.+.|..+.|
T Consensus 383 Rlwdi~~G~cLRvLeGHEeLvRciRFd--~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--- 457 (499)
T KOG0281|consen 383 RLWDIECGACLRVLEGHEELVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--- 457 (499)
T ss_pred EEEeccccHHHHHHhchHHhhhheeec--CceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEee---
Confidence 999999999999999999999999995 6779999999999999997654 34556678999999999
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCCc
Q 005096 366 HEEYFVSGSLDGSIFHWLVGHETP 389 (715)
Q Consensus 366 ~~~~l~sgs~DG~I~iwd~~~~~~ 389 (715)
+...|++++.|.+|.|||+.+...
T Consensus 458 D~fqIvsssHddtILiWdFl~~~~ 481 (499)
T KOG0281|consen 458 DEFQIISSSHDDTILIWDFLNGPP 481 (499)
T ss_pred cceEEEeccCCCeEEEEEcCCCCc
Confidence 678899999999999999976543
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-33 Score=268.35 Aligned_cols=288 Identities=22% Similarity=0.384 Sum_probs=262.5
Q ss_pred ecCCCCccEEEEEEcC---CCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005096 139 SLNKNRCSINRVLWTP---TGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQN 215 (715)
Q Consensus 139 ~l~~H~~~I~~l~~sp---dg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~ 215 (715)
...+|+.+|..++||+ +|-+|++++.||.-.|-+-+++..+-++.+|.+.|.+.+++.+..+.++++.|-+-+|||.
T Consensus 9 ~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a 88 (334)
T KOG0278|consen 9 TCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDA 88 (334)
T ss_pred EEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhh
Confidence 4679999999999985 8999999999999999999999999999999999999999988888899999999999999
Q ss_pred CCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCe-eEEEecccCCceEEEEEcCCCCEEEEEeCCCcE
Q 005096 216 NMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQ-EERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLV 294 (715)
Q Consensus 216 ~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~-~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I 294 (715)
-++..+..+ .|+.-|..++|+.|.++|++|+.+..++|||++..+ ....+.+|.+.|+.+.|....+.|+++++|++|
T Consensus 89 ~tgdelhsf-~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tV 167 (334)
T KOG0278|consen 89 VTGDELHSF-EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTV 167 (334)
T ss_pred hhhhhhhhh-hhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCce
Confidence 999888776 588899999999999999999999999999997644 456788999999999999999999999999999
Q ss_pred EEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEe
Q 005096 295 KLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGS 374 (715)
Q Consensus 295 ~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs 374 (715)
|+||.++++.+.++. .+..|+++.++.||++|.++ ..+.|.+||..+...++.++ -...|.+.+++| +..++++|+
T Consensus 168 RLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~lKs~k-~P~nV~SASL~P-~k~~fVaGg 243 (334)
T KOG0278|consen 168 RLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSFGLLKSYK-MPCNVESASLHP-KKEFFVAGG 243 (334)
T ss_pred EEEEeccCcEEEEEe-cCCCCcceeeccCCCEEEEe-cCceeEEeccccccceeecc-CccccccccccC-CCceEEecC
Confidence 999999999999987 67789999999999976655 57789999999999988887 456789999999 779999999
Q ss_pred CCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCCCC
Q 005096 375 LDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPG 431 (715)
Q Consensus 375 ~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~ 431 (715)
+|..++.||+.++..+.....+|-++|.|+.|+|||.+.++||.||+|+||......
T Consensus 244 ed~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 244 EDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGK 300 (334)
T ss_pred cceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCC
Confidence 999999999999998887778899999999999999999999999999999886533
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-32 Score=294.85 Aligned_cols=303 Identities=21% Similarity=0.332 Sum_probs=266.6
Q ss_pred EEEecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005096 136 VHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQN 215 (715)
Q Consensus 136 ~~~~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~ 215 (715)
-..++.+|+..|.++++|.|...+++|+. +.|+||+.++.++++++.. +.+.+..|.|.++++++|..+|.+.|||+
T Consensus 365 ~~i~~~GHR~dVRsl~vS~d~~~~~Sga~-~SikiWn~~t~kciRTi~~--~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdl 441 (888)
T KOG0306|consen 365 SNIEIGGHRSDVRSLCVSSDSILLASGAG-ESIKIWNRDTLKCIRTITC--GYILASKFVPGDRYIVLGTKNGELQVFDL 441 (888)
T ss_pred ceeeeccchhheeEEEeecCceeeeecCC-CcEEEEEccCcceeEEecc--ccEEEEEecCCCceEEEeccCCceEEEEe
Confidence 34578899999999999999877777654 5799999999999999875 38899999999999999999999999999
Q ss_pred CCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCC-----CeeEE--Ee-----cccCCceEEEEEcCCCC
Q 005096 216 NMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFAR-----CQEER--SL-----TGHGWDVKSVDWHPTKS 283 (715)
Q Consensus 216 ~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~-----~~~~~--~l-----~~~~~~I~si~~spdg~ 283 (715)
.+..++.++..|.+.|++++.++|++.+++++.|.+|++||+.- +...+ .+ -...+.|.|+++|||++
T Consensus 442 aS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk 521 (888)
T KOG0306|consen 442 ASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGK 521 (888)
T ss_pred ehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCc
Confidence 99999999999999999999999999999999999999999731 11111 11 12457899999999999
Q ss_pred EEEEEeCCCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEc
Q 005096 284 LLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWH 363 (715)
Q Consensus 284 ~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~s 363 (715)
+|+++--|++|+||-+++-+....+-+|.-+|.|+.+++|+++|+||+.|+.|+||-+.-|.|-+++-+|+..|.++.|.
T Consensus 522 ~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~ 601 (888)
T KOG0306|consen 522 LLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFL 601 (888)
T ss_pred EEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCCCCCcccccccccCC
Q 005096 364 PFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGDTARDKFNMGQN 443 (715)
Q Consensus 364 p~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~~~~~~~~~~~~~ 443 (715)
| ...++++++.|+.|+-||-..-..+ ..+.+|...|+|++.+++|.++++++.|.+|++|...++--..++..+....
T Consensus 602 P-~~~~FFt~gKD~kvKqWDg~kFe~i-q~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~tde~~~lEeekE~ErE 679 (888)
T KOG0306|consen 602 P-KTHLFFTCGKDGKVKQWDGEKFEEI-QKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTDEILILEEEKEGERE 679 (888)
T ss_pred c-cceeEEEecCcceEEeechhhhhhh-eeeccchheeeeeEEcCCCCeEEeccCCceeEeeeccCcceeeehhhhhhhH
Confidence 9 8899999999999999998665544 4555799999999999999999999999999999987755544444443333
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-30 Score=268.47 Aligned_cols=244 Identities=28% Similarity=0.497 Sum_probs=226.8
Q ss_pred ecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 005096 139 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN 218 (715)
Q Consensus 139 ~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~ 218 (715)
.+..|...|.++.|++++++|++++.||.|++||+.+.+.+..+..|...|.++.|++++++|++++.|+.|++||+.+.
T Consensus 46 ~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 125 (289)
T cd00200 46 TLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETG 125 (289)
T ss_pred EEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCc
Confidence 45578888999999999999999999999999999998888899999999999999999888888888999999999988
Q ss_pred ceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005096 219 NVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWD 298 (715)
Q Consensus 219 ~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwD 298 (715)
+....+..|...|.+++|++++.++++++.|+.|++||+++.+.+..+..+...|.+++|+++++.|++++.|+.|++||
T Consensus 126 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d 205 (289)
T cd00200 126 KCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWD 205 (289)
T ss_pred EEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEE
Confidence 88888888999999999999988888888899999999998888888888888999999999999999999999999999
Q ss_pred CCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCc
Q 005096 299 AKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGS 378 (715)
Q Consensus 299 l~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~ 378 (715)
+++++.+..+..+...+.+++|++++.++++++.|+.|++||+++++.+..+..|...|.+++|++ ++.+|++++.||.
T Consensus 206 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~ 284 (289)
T cd00200 206 LSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSP-DGKRLASGSADGT 284 (289)
T ss_pred CCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECC-CCCEEEEecCCCe
Confidence 999888888877888999999999988888888899999999999999999999999999999999 7899999999999
Q ss_pred EEEEE
Q 005096 379 IFHWL 383 (715)
Q Consensus 379 I~iwd 383 (715)
|++|+
T Consensus 285 i~iw~ 289 (289)
T cd00200 285 IRIWD 289 (289)
T ss_pred EEecC
Confidence 99996
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-31 Score=254.73 Aligned_cols=289 Identities=17% Similarity=0.296 Sum_probs=247.7
Q ss_pred ecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 005096 139 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN 218 (715)
Q Consensus 139 ~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~ 218 (715)
.|.+|..+|+.|.|+.+|.+|++++.|.++.||-..+++.+-++.+|.+.|+||..+.+.++|++|+.|.+++|||++++
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG 84 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG 84 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeeecCCCCCeEEEEEecCCCEEEEEEC-----CCcEEEEECC-------CCeeEEEecccCCceEEEEEcCCCCEEE
Q 005096 219 NVKANKSAHKESVRDLSFCRTDLKFCSCSD-----DTTVKVWDFA-------RCQEERSLTGHGWDVKSVDWHPTKSLLV 286 (715)
Q Consensus 219 ~~~~~~~~h~~~I~~l~~spd~~~Las~s~-----Dg~V~iwdl~-------~~~~~~~l~~~~~~I~si~~spdg~~L~ 286 (715)
+.+..++ ....|..+.|+.++++++.+++ .+.|.++|++ ..+....+..+...++.+.|.+-+++|+
T Consensus 85 k~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii 163 (327)
T KOG0643|consen 85 KQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETII 163 (327)
T ss_pred cEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEE
Confidence 9998875 5678999999999998887765 3679999997 3445677777889999999999999999
Q ss_pred EEeCCCcEEEEECCCCcee-EEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccC
Q 005096 287 SGGKDSLVKLWDAKSGREL-CSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPF 365 (715)
Q Consensus 287 sgs~Dg~I~iwDl~s~~~~-~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~ 365 (715)
+|.+||.|.+||+++++.+ ...+.|...|+.+.+++|..++++++.|.+-++||+++.+.++++. .+.+|++.+++|.
T Consensus 164 ~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~-te~PvN~aaisP~ 242 (327)
T KOG0643|consen 164 AGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYT-TERPVNTAAISPL 242 (327)
T ss_pred EecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEee-ecccccceecccc
Confidence 9999999999999998554 4457789999999999999999999999999999999999999998 6788999999995
Q ss_pred CCCEEEEEeCCCc-EEEEEcCCCC-----------ceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCC
Q 005096 366 HEEYFVSGSLDGS-IFHWLVGHET-----------PQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNR 429 (715)
Q Consensus 366 ~~~~l~sgs~DG~-I~iwd~~~~~-----------~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~ 429 (715)
.+.+|+.|+.+-. |.--+.+.++ +.+....+|-++|++++|+|+|+..++|++||.|++...+.
T Consensus 243 ~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 243 LDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred cceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEecc
Confidence 5555555544321 2222222221 11233457999999999999999999999999999986643
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-31 Score=295.80 Aligned_cols=248 Identities=27% Similarity=0.492 Sum_probs=228.0
Q ss_pred EEecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeC-CCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005096 137 HTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNG-QSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQN 215 (715)
Q Consensus 137 ~~~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~-~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~ 215 (715)
...+.+|...|++++|++|+++|++++.|++|+|||+ ..+..++++.+|...|++++|++++++|++|+.|++|+|||+
T Consensus 196 ~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~ 275 (456)
T KOG0266|consen 196 LRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDV 275 (456)
T ss_pred hccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEec
Confidence 3455899999999999999999999999999999999 556899999999999999999999999999999999999999
Q ss_pred CCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCe--eEEEecccCCc--eEEEEEcCCCCEEEEEeCC
Q 005096 216 NMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQ--EERSLTGHGWD--VKSVDWHPTKSLLVSGGKD 291 (715)
Q Consensus 216 ~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~--~~~~l~~~~~~--I~si~~spdg~~L~sgs~D 291 (715)
++++++..+..|.+.|++++|++++++|++++.|+.|+|||+.++. +...+..+... ++++.|++++++|++++.|
T Consensus 276 ~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d 355 (456)
T KOG0266|consen 276 RTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLD 355 (456)
T ss_pred cCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCC
Confidence 9999999999999999999999999999999999999999999988 45666666555 9999999999999999999
Q ss_pred CcEEEEECCCCceeEEeccCCCce---EEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecC-CCCeEEEEEccCCC
Q 005096 292 SLVKLWDAKSGRELCSFHGHKNMV---LCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGH-RKDVTALAWHPFHE 367 (715)
Q Consensus 292 g~I~iwDl~s~~~~~~~~~~~~~I---~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h-~~~V~~l~~sp~~~ 367 (715)
+.+++||+++++++..+.+|...+ .+...+..+.++++|+.|+.|++||+.++..+..+.+| ...+..+++++ ..
T Consensus 356 ~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~-~~ 434 (456)
T KOG0266|consen 356 RTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHP-TE 434 (456)
T ss_pred CeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCC-Cc
Confidence 999999999999999998887753 34455678999999999999999999999999999999 89999999999 88
Q ss_pred CEEEEEe--CCCcEEEEEcC
Q 005096 368 EYFVSGS--LDGSIFHWLVG 385 (715)
Q Consensus 368 ~~l~sgs--~DG~I~iwd~~ 385 (715)
+++++++ .|+.|++|..+
T Consensus 435 ~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 435 NLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred CeeeecCcCCCceEEEecCC
Confidence 9999888 78899999764
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-32 Score=270.24 Aligned_cols=286 Identities=23% Similarity=0.351 Sum_probs=255.5
Q ss_pred EecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEE--------eccCCCEEEEEEcCCCCEEEEEeCCCc
Q 005096 138 TSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMIL--------QAHDHAIRSMVWSHNDNWMVSGDDGGA 209 (715)
Q Consensus 138 ~~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l--------~~h~~~V~~l~~spdg~~L~tgs~dg~ 209 (715)
..-.+.+.-+.|..|||||++|++|+.||-|.|||..++++.+.+ --++..|.|+.|+.|...|++|+.||.
T Consensus 207 ~IKFg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGk 286 (508)
T KOG0275|consen 207 SIKFGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGK 286 (508)
T ss_pred heecccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCc
Confidence 334466777899999999999999999999999999998876554 347889999999999999999999999
Q ss_pred EEEEeCCCCceeeeec-CCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEE
Q 005096 210 IKYWQNNMNNVKANKS-AHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSG 288 (715)
Q Consensus 210 I~iwd~~~~~~~~~~~-~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sg 288 (715)
|+||.++++.+++.+. .|...|+|+.|+.|+..+++++.|.+|+|.-+.++++++.+.+|...|+...|++||..++++
T Consensus 287 IKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisa 366 (508)
T KOG0275|consen 287 IKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISA 366 (508)
T ss_pred EEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEe
Confidence 9999999999988886 899999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCcEEEEECCCCceeEEecc--CCCceEEEEEcC-CCCEEEEEECCCeEEEEECCCCeEEEEeecC---CCCeEEEEE
Q 005096 289 GKDSLVKLWDAKSGRELCSFHG--HKNMVLCVKWNQ-NGNWVLTASKDQIIKLYDIRAMKELESFRGH---RKDVTALAW 362 (715)
Q Consensus 289 s~Dg~I~iwDl~s~~~~~~~~~--~~~~I~sl~~sp-dg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h---~~~V~~l~~ 362 (715)
+.||+|++|+.++.+|+.+++. .+..|.++..-| +-..+++|...++|+|.++. |..+++|... .+...+.+.
T Consensus 367 SsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGkREgGdFi~~~l 445 (508)
T KOG0275|consen 367 SSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKREGGDFINAIL 445 (508)
T ss_pred cCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCCccCCceEEEEe
Confidence 9999999999999999998874 455678887777 55789999999999999986 8888888643 355777788
Q ss_pred ccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEe
Q 005096 363 HPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWC 426 (715)
Q Consensus 363 sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWd 426 (715)
+| .++++.+.++|+.++.|.+.+++.. .....|+..|..++-+|..++|++-++||.+++|.
T Consensus 446 Sp-kGewiYcigED~vlYCF~~~sG~LE-~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 446 SP-KGEWIYCIGEDGVLYCFSVLSGKLE-RTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred cC-CCcEEEEEccCcEEEEEEeecCcee-eeeecccccccccccCcccchhhhhcccchhhhcC
Confidence 98 8999999999999999999877655 44556899999999999999999999999999995
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-31 Score=291.26 Aligned_cols=290 Identities=25% Similarity=0.430 Sum_probs=261.5
Q ss_pred ecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 005096 139 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN 218 (715)
Q Consensus 139 ~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~ 218 (715)
.++.-+.+|..++|+|...+|+++-.+|.|.+||..-+.++..|..|++.|..|+|+++..++++|++|-.|+||+..+.
T Consensus 4 kfEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~r 83 (1202)
T KOG0292|consen 4 KFESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTR 83 (1202)
T ss_pred hhhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccc
Confidence 34556778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005096 219 NVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWD 298 (715)
Q Consensus 219 ~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwD 298 (715)
+++.++.+|.+.|+.+.|++.--+|+++|+|-+|+||+..+.+++..+.+|..-|.|..|+|...++++++-|.+|+|||
T Consensus 84 rclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWD 163 (1202)
T KOG0292|consen 84 RCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWD 163 (1202)
T ss_pred eehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCc-----------------------------eeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCe--EE
Q 005096 299 AKSGR-----------------------------ELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMK--EL 347 (715)
Q Consensus 299 l~s~~-----------------------------~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~--~~ 347 (715)
+..-+ ....+++|+..|+-++|++.-.+|++|+.|+.|++|.+...+ ++
T Consensus 164 isGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEv 243 (1202)
T KOG0292|consen 164 ISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEV 243 (1202)
T ss_pred ecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceee
Confidence 85211 123457899999999999999999999999999999987544 46
Q ss_pred EEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEec
Q 005096 348 ESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCR 427 (715)
Q Consensus 348 ~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl 427 (715)
.+.++|...|+++.|+| ..++|++.++|++|+|||+.....+..+.. ..+..|.++.+|..+++++|- |+-+.||.+
T Consensus 244 DtcrgH~nnVssvlfhp-~q~lIlSnsEDksirVwDm~kRt~v~tfrr-endRFW~laahP~lNLfAAgH-DsGm~VFkl 320 (1202)
T KOG0292|consen 244 DTCRGHYNNVSSVLFHP-HQDLILSNSEDKSIRVWDMTKRTSVQTFRR-ENDRFWILAAHPELNLFAAGH-DSGMIVFKL 320 (1202)
T ss_pred hhhhcccCCcceEEecC-ccceeEecCCCccEEEEecccccceeeeec-cCCeEEEEEecCCcceeeeec-CCceEEEEE
Confidence 77889999999999999 899999999999999999988877766654 456899999999998777665 566778887
Q ss_pred CCCC
Q 005096 428 NRPG 431 (715)
Q Consensus 428 ~~~~ 431 (715)
+++.
T Consensus 321 eREr 324 (1202)
T KOG0292|consen 321 ERER 324 (1202)
T ss_pred cccC
Confidence 6543
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-31 Score=256.21 Aligned_cols=280 Identities=23% Similarity=0.410 Sum_probs=238.7
Q ss_pred EEEEEcCC-CCEEEEEe-------CCCeEEEEeCCCCceEEEEec--cCCCEEEEEEcCC-CCEEEEEeCCCcEEEEeCC
Q 005096 148 NRVLWTPT-GRRLITGS-------QSGEFTLWNGQSFNFEMILQA--HDHAIRSMVWSHN-DNWMVSGDDGGAIKYWQNN 216 (715)
Q Consensus 148 ~~l~~spd-g~~Latgs-------~dg~I~Iwd~~~~~~~~~l~~--h~~~V~~l~~spd-g~~L~tgs~dg~I~iwd~~ 216 (715)
.++.|||- .++||++. ..|++.|.++...+-+.++.. -+..+..++|+++ .+.+++++.||+++|||+.
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~ 91 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLT 91 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccC
Confidence 57788882 33454442 368999999875444444432 3578999999986 4678899999999999965
Q ss_pred CC-ceeeeecCCCCCeEEEEEecC-CCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCC-CCEEEEEeCCCc
Q 005096 217 MN-NVKANKSAHKESVRDLSFCRT-DLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPT-KSLLVSGGKDSL 293 (715)
Q Consensus 217 ~~-~~~~~~~~h~~~I~~l~~spd-~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spd-g~~L~sgs~Dg~ 293 (715)
.. ..+..++.|+..|.++.|+.. ...+++++.|++|++||......+.++.+|...|...+|+|. .++|++++.|++
T Consensus 92 ~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~ 171 (311)
T KOG0277|consen 92 MPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGT 171 (311)
T ss_pred CCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCce
Confidence 43 567788999999999999874 456788899999999999999999999999999999999994 679999999999
Q ss_pred EEEEECCCCceeEEeccCCCceEEEEEcC-CCCEEEEEECCCeEEEEECCCCe-EEEEeecCCCCeEEEEEccCCCCEEE
Q 005096 294 VKLWDAKSGRELCSFHGHKNMVLCVKWNQ-NGNWVLTASKDQIIKLYDIRAMK-ELESFRGHRKDVTALAWHPFHEEYFV 371 (715)
Q Consensus 294 I~iwDl~s~~~~~~~~~~~~~I~sl~~sp-dg~~Lasgs~dg~I~iwDl~t~~-~~~~~~~h~~~V~~l~~sp~~~~~l~ 371 (715)
++|||++.......+..|..+|.|+.|+. +.+.|++|+.|+.|++||+++.+ .+.++.+|.-.|+.|+|+|....+|+
T Consensus 172 l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLa 251 (311)
T KOG0277|consen 172 LRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLA 251 (311)
T ss_pred EEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhh
Confidence 99999997544445888999999999998 67889999999999999999865 47888999999999999998899999
Q ss_pred EEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCC-CCEEEEEECCCeEEEEec
Q 005096 372 SGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPI-GYLLCSGSNDHTTKFWCR 427 (715)
Q Consensus 372 sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd-g~~L~sgs~Dg~I~iWdl 427 (715)
+++.|-+++|||.......++....|...|..+.|+.- ..++|+++.|+.++||+-
T Consensus 252 SasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 252 SASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred hccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 99999999999999888777888889999999999884 689999999999999973
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.8e-31 Score=259.36 Aligned_cols=295 Identities=21% Similarity=0.363 Sum_probs=252.0
Q ss_pred eeEEEEecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCC------------------CceEEEEeccCCCEEEEEE
Q 005096 133 AKFVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQS------------------FNFEMILQAHDHAIRSMVW 194 (715)
Q Consensus 133 ~~~~~~~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~------------------~~~~~~l~~h~~~V~~l~~ 194 (715)
.++....+..|+..+.+.+|++||.++++|+.|..|+|.|++. .-.++++..|...|+++.|
T Consensus 101 ~~yEt~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~F 180 (430)
T KOG0640|consen 101 SEYETKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDF 180 (430)
T ss_pred cccceEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceee
Confidence 3455567788999999999999999999999999999999762 1357788889999999999
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCCCceeeeec--CCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEe---ccc
Q 005096 195 SHNDNWMVSGDDGGAIKYWQNNMNNVKANKS--AHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSL---TGH 269 (715)
Q Consensus 195 spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~--~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l---~~~ 269 (715)
+|...+|++++.|++|++||+.....++.++ .....|.+|.|+|.|.+|++|.+..++++||+++.++...- ..|
T Consensus 181 HPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qh 260 (430)
T KOG0640|consen 181 HPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQH 260 (430)
T ss_pred cchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCccccc
Confidence 9999999999999999999998765444332 34568999999999999999999999999999998776544 358
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEec-cC-CCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEE
Q 005096 270 GWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFH-GH-KNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKEL 347 (715)
Q Consensus 270 ~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~-~~-~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~ 347 (715)
.+.|+++.+++.+++.++++.||.|+|||--+++|+.++. .| ...|++..|..+++||++.+.|..|++|.+.+++.+
T Consensus 261 t~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l 340 (430)
T KOG0640|consen 261 TGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRML 340 (430)
T ss_pred ccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceE
Confidence 8899999999999999999999999999999999998885 33 457999999999999999999999999999999999
Q ss_pred EEeecCCC-----CeEEEEEccCCCCEEEEE-eCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCe
Q 005096 348 ESFRGHRK-----DVTALAWHPFHEEYFVSG-SLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHT 421 (715)
Q Consensus 348 ~~~~~h~~-----~V~~l~~sp~~~~~l~sg-s~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~ 421 (715)
.++.+... --+...|+. .+++++.- -..+.+.-||.++.........+|.+.+..+.-+|.+..+++|+.|..
T Consensus 341 ~~YtGAg~tgrq~~rtqAvFNh-tEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~r 419 (430)
T KOG0640|consen 341 KEYTGAGTTGRQKHRTQAVFNH-TEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFR 419 (430)
T ss_pred EEEecCCcccchhhhhhhhhcC-ccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccce
Confidence 99876421 123445655 45555443 345679999999998888888899999999999999999999999999
Q ss_pred EEEEecC
Q 005096 422 TKFWCRN 428 (715)
Q Consensus 422 I~iWdl~ 428 (715)
+++|-..
T Consensus 420 aRFWyrr 426 (430)
T KOG0640|consen 420 ARFWYRR 426 (430)
T ss_pred eeeeeec
Confidence 9999753
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.2e-30 Score=248.79 Aligned_cols=277 Identities=17% Similarity=0.331 Sum_probs=249.6
Q ss_pred EecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEE--EeccCCCEEEEEEcCC-CCEEEEEeCCCcEEEEe
Q 005096 138 TSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMI--LQAHDHAIRSMVWSHN-DNWMVSGDDGGAIKYWQ 214 (715)
Q Consensus 138 ~~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~--l~~h~~~V~~l~~spd-g~~L~tgs~dg~I~iwd 214 (715)
..+.+|...|.+|+|+-+|..|++|+.|+++.||+++..+..+. ..+|.+.|..++|++. .++|++++.|.+|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 56789999999999999999999999999999999987765544 4678899999999875 57899999999999999
Q ss_pred CCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcE
Q 005096 215 NNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLV 294 (715)
Q Consensus 215 ~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I 294 (715)
+..++....+....+.| -+.|+|++.++++++.|..|.+.|.++.+...... ....+..++|+.++++++.....|+|
T Consensus 94 ~r~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~~w~~~nd~Fflt~GlG~v 171 (313)
T KOG1407|consen 94 IRSGKCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEISWNNSNDLFFLTNGLGCV 171 (313)
T ss_pred eccCcEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEecccceeehhc-ccceeeeeeecCCCCEEEEecCCceE
Confidence 99999888876655555 47899999999999999999999998877666554 55678899999888888877778999
Q ss_pred EEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEe
Q 005096 295 KLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGS 374 (715)
Q Consensus 295 ~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs 374 (715)
.|...-+-+.+..++.|.....||.|+|+|+|||+|+.|-.+.+||+...-+++.+..++-.|..|+|+- ++++||+++
T Consensus 172 ~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~-dg~~lASaS 250 (313)
T KOG1407|consen 172 EILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSH-DGRMLASAS 250 (313)
T ss_pred EEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEecc-CcceeeccC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998 999999999
Q ss_pred CCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECC
Q 005096 375 LDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSND 419 (715)
Q Consensus 375 ~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~D 419 (715)
+|..|-|=++.++..+.++. +++....++|+|...+||.+++|
T Consensus 251 EDh~IDIA~vetGd~~~eI~--~~~~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 251 EDHFIDIAEVETGDRVWEIP--CEGPTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred ccceEEeEecccCCeEEEee--ccCCceeEEecCCCceeeEEecC
Confidence 99999999999999888776 57899999999999999988876
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.8e-30 Score=292.71 Aligned_cols=292 Identities=23% Similarity=0.391 Sum_probs=255.2
Q ss_pred cCCCCccEEEEEEcCCCCEEEEEe--CCCeEEEEeCCC------------CceEEEEeccCCCEEEEEEcCCCCEEEEEe
Q 005096 140 LNKNRCSINRVLWTPTGRRLITGS--QSGEFTLWNGQS------------FNFEMILQAHDHAIRSMVWSHNDNWMVSGD 205 (715)
Q Consensus 140 l~~H~~~I~~l~~spdg~~Latgs--~dg~I~Iwd~~~------------~~~~~~l~~h~~~V~~l~~spdg~~L~tgs 205 (715)
+..+...|.+|+.+||+..++||+ .||.++||+.+. .+.+.....|.+.|+|+.|++||++||+|+
T Consensus 9 v~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGS 88 (942)
T KOG0973|consen 9 VNHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGS 88 (942)
T ss_pred cccCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeecc
Confidence 445566799999999999999999 899999998442 234556678999999999999999999999
Q ss_pred CCCcEEEEeCCC------------------CceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEec
Q 005096 206 DGGAIKYWQNNM------------------NNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLT 267 (715)
Q Consensus 206 ~dg~I~iwd~~~------------------~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~ 267 (715)
+|+.|.||+... .+.+..+.+|...|.+++|++++.+|++++.|++|.|||..+.+.+..+.
T Consensus 89 DD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~ 168 (942)
T KOG0973|consen 89 DDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLR 168 (942)
T ss_pred CcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeee
Confidence 999999998762 12566778999999999999999999999999999999999999999999
Q ss_pred ccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccC------CCceEEEEEcCCCCEEEEEE----CCCeEE
Q 005096 268 GHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGH------KNMVLCVKWNQNGNWVLTAS----KDQIIK 337 (715)
Q Consensus 268 ~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~------~~~I~sl~~spdg~~Lasgs----~dg~I~ 337 (715)
+|...|..+.|+|-|++|++-++|++|+||++.+....+.+.++ ...+..+.|||||.+|++.. ...++.
T Consensus 169 ~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~ 248 (942)
T KOG0973|consen 169 GHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIA 248 (942)
T ss_pred cccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeE
Confidence 99999999999999999999999999999998877666666543 23578899999999999864 234799
Q ss_pred EEECCCCeEEEEeecCCCCeEEEEEccC----CC------------CEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCE
Q 005096 338 LYDIRAMKELESFRGHRKDVTALAWHPF----HE------------EYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTV 401 (715)
Q Consensus 338 iwDl~t~~~~~~~~~h~~~V~~l~~sp~----~~------------~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V 401 (715)
|.+-.+++.-..|.+|...+.+++|+|. .. .++|+|+.|++|.||.......++.+.......|
T Consensus 249 IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI 328 (942)
T KOG0973|consen 249 IIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSI 328 (942)
T ss_pred EEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCce
Confidence 9999999999999999999999999883 11 1788999999999999988888777777778899
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEecCCCC
Q 005096 402 WDLAWHPIGYLLCSGSNDHTTKFWCRNRPG 431 (715)
Q Consensus 402 ~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~ 431 (715)
.+++|++||..|+++|.||+|.+..+++.+
T Consensus 329 ~DmsWspdG~~LfacS~DGtV~~i~Fee~E 358 (942)
T KOG0973|consen 329 VDMSWSPDGFSLFACSLDGTVALIHFEEKE 358 (942)
T ss_pred eeeeEcCCCCeEEEEecCCeEEEEEcchHH
Confidence 999999999999999999999999986544
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.9e-30 Score=287.19 Aligned_cols=279 Identities=26% Similarity=0.387 Sum_probs=255.0
Q ss_pred CCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEE-EeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCce
Q 005096 142 KNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMI-LQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNV 220 (715)
Q Consensus 142 ~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~-l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~ 220 (715)
.+...|.+..|. ..++++++.|.+|++||..++..+.. +.+|.+.|.++++...+++|++|+.|.+++|||..++.+
T Consensus 206 ~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C 283 (537)
T KOG0274|consen 206 TDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGEC 283 (537)
T ss_pred cCcchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcE
Confidence 467788999998 55899999999999999999999888 999999999999988789999999999999999999999
Q ss_pred eeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 005096 221 KANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAK 300 (715)
Q Consensus 221 ~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~ 300 (715)
...+.+|.+.|.++... ..++++|+.|.+|++||+.++..+..+.+|.+.|+++.++ +.++++|+.|++|++||++
T Consensus 284 ~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~ 359 (537)
T KOG0274|consen 284 THSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPR 359 (537)
T ss_pred EEEecCCCceEEEEEcc--CceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhh
Confidence 99999999999999874 5678889999999999999999999999999999999998 8899999999999999999
Q ss_pred CCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCC-eEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcE
Q 005096 301 SGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAM-KELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSI 379 (715)
Q Consensus 301 s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~-~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I 379 (715)
+++++.++.+|...|.++.+... +++++|+.|+.|++||+++. +++..+.+|..-|..+.+ .+++|++++.|++|
T Consensus 360 ~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~---~~~~Lvs~~aD~~I 435 (537)
T KOG0274|consen 360 TGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL---RDNFLVSSSADGTI 435 (537)
T ss_pred hceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCccccccccc---ccceeEeccccccE
Confidence 99999999999999999988755 88999999999999999999 999999999999988877 57899999999999
Q ss_pred EEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCCCCC
Q 005096 380 FHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGD 432 (715)
Q Consensus 380 ~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~~ 432 (715)
++||..++..+..+...|...|+.+++. ...+++++.|+++++||+.....
T Consensus 436 k~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~ 486 (537)
T KOG0274|consen 436 KLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTL 486 (537)
T ss_pred EEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEecccCch
Confidence 9999988887766665467889999887 56789999999999999965444
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.1e-29 Score=246.91 Aligned_cols=288 Identities=20% Similarity=0.307 Sum_probs=249.5
Q ss_pred ecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeC--CCcEEEEeCC
Q 005096 139 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDD--GGAIKYWQNN 216 (715)
Q Consensus 139 ~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~--dg~I~iwd~~ 216 (715)
.+....+.|++|.|+.+|.+|++++.|.+|+|||..+++.++++..++..|..++|....+.++.++. |.+|++.++.
T Consensus 9 ~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~ 88 (311)
T KOG1446|consen 9 VFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLH 88 (311)
T ss_pred ccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEee
Confidence 34456789999999999999999999999999999999999999999999999999988888877776 8899999999
Q ss_pred CCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEE
Q 005096 217 MNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKL 296 (715)
Q Consensus 217 ~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~i 296 (715)
+++.++.+.+|...|++|+.+|-++.+++++.|++|++||++..++...+..... ..++|+|+|-++|++.....|+|
T Consensus 89 dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~--pi~AfDp~GLifA~~~~~~~IkL 166 (311)
T KOG1446|consen 89 DNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR--PIAAFDPEGLIFALANGSELIKL 166 (311)
T ss_pred cCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCC--cceeECCCCcEEEEecCCCeEEE
Confidence 9999999999999999999999999999999999999999997777666654333 35789999999999988889999
Q ss_pred EECCCC--ceeEEec---cCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCe---EEEEEccCCCC
Q 005096 297 WDAKSG--RELCSFH---GHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDV---TALAWHPFHEE 368 (715)
Q Consensus 297 wDl~s~--~~~~~~~---~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V---~~l~~sp~~~~ 368 (715)
||+|+- ....++. ....+.+.|.||+||++|+.++..+.+++.|.-+|..+.++..+...- ...+|+| +++
T Consensus 167 yD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftP-ds~ 245 (311)
T KOG1446|consen 167 YDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTP-DSK 245 (311)
T ss_pred EEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECC-CCc
Confidence 999963 3333443 346778999999999999999999999999999999999888765443 6788999 899
Q ss_pred EEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCCCC
Q 005096 369 YFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPG 431 (715)
Q Consensus 369 ~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~ 431 (715)
+|++|+.||+|.+|+++++.........+.+.+.++.|+|....++++ +..+.+|-.+..+
T Consensus 246 Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa--~s~l~fw~p~~~~ 306 (311)
T KOG1446|consen 246 FVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSA--SSNLVFWLPDEDA 306 (311)
T ss_pred EEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeec--CceEEEEeccccc
Confidence 999999999999999999988877776678899999999887666655 5789999765443
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.9e-30 Score=272.82 Aligned_cols=242 Identities=22% Similarity=0.334 Sum_probs=223.9
Q ss_pred ecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 005096 139 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN 218 (715)
Q Consensus 139 ~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~ 218 (715)
++.-..-+|++..|-..-+++++|+.|..|+||+..+++.++.+..|..-|+||+.+|..-+++++++|-+|++||.+.+
T Consensus 50 sfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~ 129 (794)
T KOG0276|consen 50 SFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENE 129 (794)
T ss_pred eeeecccchhhheeeeccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCc
Confidence 44455668888999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred -ceeeeecCCCCCeEEEEEec-CCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCC--CEEEEEeCCCcE
Q 005096 219 -NVKANKSAHKESVRDLSFCR-TDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTK--SLLVSGGKDSLV 294 (715)
Q Consensus 219 -~~~~~~~~h~~~I~~l~~sp-d~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg--~~L~sgs~Dg~I 294 (715)
.+..++.+|...|.+++|.| |.+.+++++.|++|+||.+.+.....++.+|...|+||++.+-| .+|++|++|.+|
T Consensus 130 wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~ti 209 (794)
T KOG0276|consen 130 WACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTI 209 (794)
T ss_pred eeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceE
Confidence 67888999999999999998 55889999999999999999999999999999999999998754 499999999999
Q ss_pred EEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEe
Q 005096 295 KLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGS 374 (715)
Q Consensus 295 ~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs 374 (715)
+|||..+..|+.++++|...|.++.|+|.-.+|++|++||+|+||+..+.+...++.-....|.||+-.+ +++.+++|.
T Consensus 210 KvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k-~~~~i~vG~ 288 (794)
T KOG0276|consen 210 KVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHK-GDGKIAVGF 288 (794)
T ss_pred EEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecC-CCCeEEEec
Confidence 9999999999999999999999999999999999999999999999999999888888889999999888 667788888
Q ss_pred CCCcEEE
Q 005096 375 LDGSIFH 381 (715)
Q Consensus 375 ~DG~I~i 381 (715)
++|.|.|
T Consensus 289 Deg~i~v 295 (794)
T KOG0276|consen 289 DEGSVTV 295 (794)
T ss_pred cCCcEEE
Confidence 7776643
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.5e-29 Score=242.20 Aligned_cols=245 Identities=23% Similarity=0.444 Sum_probs=217.0
Q ss_pred ceEEEEeccCCCEEEEEEcCC-CCEEEEEeCCCcEEEEeCCCC---ceeeee-cCCCCCeEEEEEecCCCEEEEEECCCc
Q 005096 177 NFEMILQAHDHAIRSMVWSHN-DNWMVSGDDGGAIKYWQNNMN---NVKANK-SAHKESVRDLSFCRTDLKFCSCSDDTT 251 (715)
Q Consensus 177 ~~~~~l~~h~~~V~~l~~spd-g~~L~tgs~dg~I~iwd~~~~---~~~~~~-~~h~~~I~~l~~spd~~~Las~s~Dg~ 251 (715)
..++.+.+|.+.|..++|++- |..|++|+.|+.|+||+...+ .++..+ ..|+..|++++|+|.+++|++++.|.+
T Consensus 5 ~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t 84 (312)
T KOG0645|consen 5 ILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDAT 84 (312)
T ss_pred eeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccce
Confidence 456778899999999999998 889999999999999998852 333333 468999999999999999999999999
Q ss_pred EEEEECC--CCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC---ceeEEeccCCCceEEEEEcCCCCE
Q 005096 252 VKVWDFA--RCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSG---RELCSFHGHKNMVLCVKWNQNGNW 326 (715)
Q Consensus 252 V~iwdl~--~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~---~~~~~~~~~~~~I~sl~~spdg~~ 326 (715)
+.||.-. +.+++.++.+|.+.|.|++|+.+|++||+++.|..|-||.+..+ +++..+..|...|..+.|+|...+
T Consensus 85 ~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dl 164 (312)
T KOG0645|consen 85 VVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDL 164 (312)
T ss_pred EEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcce
Confidence 9999864 45778899999999999999999999999999999999998754 467788999999999999999999
Q ss_pred EEEEECCCeEEEEECC---CCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEE
Q 005096 327 VLTASKDQIIKLYDIR---AMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWD 403 (715)
Q Consensus 327 Lasgs~dg~I~iwDl~---t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~ 403 (715)
|++++.|++|++|+-. ...++.++.+|...|.+++|++ .+..|++++.|++|+||.... .+...|+..+..
T Consensus 165 L~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~-~G~rl~s~sdD~tv~Iw~~~~-----~~~~~~sr~~Y~ 238 (312)
T KOG0645|consen 165 LFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDN-IGSRLVSCSDDGTVSIWRLYT-----DLSGMHSRALYD 238 (312)
T ss_pred eEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecC-CCceEEEecCCcceEeeeecc-----CcchhcccceEe
Confidence 9999999999999876 4678999999999999999999 789999999999999998652 334457889999
Q ss_pred EEEcCCCCEEEEEECCCeEEEEecCC
Q 005096 404 LAWHPIGYLLCSGSNDHTTKFWCRNR 429 (715)
Q Consensus 404 l~~spdg~~L~sgs~Dg~I~iWdl~~ 429 (715)
+.|. ...|++++.|+.|+||....
T Consensus 239 v~W~--~~~IaS~ggD~~i~lf~~s~ 262 (312)
T KOG0645|consen 239 VPWD--NGVIASGGGDDAIRLFKESD 262 (312)
T ss_pred eeec--ccceEeccCCCEEEEEEecC
Confidence 9998 55899999999999998864
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.9e-30 Score=251.51 Aligned_cols=252 Identities=25% Similarity=0.387 Sum_probs=222.9
Q ss_pred EEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCC-CceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEEC
Q 005096 179 EMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNM-NNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDF 257 (715)
Q Consensus 179 ~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~-~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl 257 (715)
+..+.+|++.|+.+.|+|+|.+|++|+.|..|.+|++.. .+....+++|++.|..+.|..|++.|++++.|.+|+.||+
T Consensus 40 ~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~ 119 (338)
T KOG0265|consen 40 IMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDA 119 (338)
T ss_pred hhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEec
Confidence 455778999999999999999999999999999999654 3556677899999999999999999999999999999999
Q ss_pred CCCeeEEEecccCCceEEEEEcCCCC-EEEEEeCCCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeE
Q 005096 258 ARCQEERSLTGHGWDVKSVDWHPTKS-LLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQII 336 (715)
Q Consensus 258 ~~~~~~~~l~~~~~~I~si~~spdg~-~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I 336 (715)
++++.++.++.|...|+++.-+.-|. ++.+++.|++++|||+|+...+.++. .+..++++.|..++..+++|+.|+.|
T Consensus 120 ~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d~s~qv~sggIdn~i 198 (338)
T KOG0265|consen 120 ETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKDTSDQVISGGIDNDI 198 (338)
T ss_pred ccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-cceeEEEEEecccccceeeccccCce
Confidence 99999999999999999998655454 67788999999999999988888876 56789999999999999999999999
Q ss_pred EEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCC---CceEEEeeccC----CCEEEEEEcCC
Q 005096 337 KLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHE---TPQVEIHNVHD----NTVWDLAWHPI 409 (715)
Q Consensus 337 ~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~---~~~~~~~~~h~----~~V~~l~~spd 409 (715)
++||++..+.+..+++|...|+.|..++ ++.++.+-+.|.+|++||++.. ...+.++.+|. .....++|+++
T Consensus 199 kvWd~r~~d~~~~lsGh~DtIt~lsls~-~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~ 277 (338)
T KOG0265|consen 199 KVWDLRKNDGLYTLSGHADTITGLSLSR-YGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPN 277 (338)
T ss_pred eeeccccCcceEEeecccCceeeEEecc-CCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCC
Confidence 9999999999999999999999999999 8999999999999999999754 33345554432 34567899999
Q ss_pred CCEEEEEECCCeEEEEecCCCCC
Q 005096 410 GYLLCSGSNDHTTKFWCRNRPGD 432 (715)
Q Consensus 410 g~~L~sgs~Dg~I~iWdl~~~~~ 432 (715)
+..+.+|+.|..+++||....+-
T Consensus 278 ~~~i~ags~dr~vyvwd~~~r~~ 300 (338)
T KOG0265|consen 278 GTKITAGSADRFVYVWDTTSRRI 300 (338)
T ss_pred CCccccccccceEEEeecccccE
Confidence 99999999999999999865443
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-30 Score=264.92 Aligned_cols=276 Identities=17% Similarity=0.329 Sum_probs=232.7
Q ss_pred eEeeehhhheeeEEEEEeccCCCccccccCchhhhcCccceeecCCCCCceeeeEEEEecCCCCccEEEEEEcCCCCEEE
Q 005096 81 AVDYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSFAAKFVHTSLNKNRCSINRVLWTPTGRRLI 160 (715)
Q Consensus 81 ~~~~~~~~~~~~~irvW~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~~l~~spdg~~La 160 (715)
...|+++...+.+..+|....... .-+.+++.+|..+|..|.||||.++|+
T Consensus 235 nGkyLAsaSkD~Taiiw~v~~d~~-----------------------------~kl~~tlvgh~~~V~yi~wSPDdryLl 285 (519)
T KOG0293|consen 235 NGKYLASASKDSTAIIWIVVYDVH-----------------------------FKLKKTLVGHSQPVSYIMWSPDDRYLL 285 (519)
T ss_pred CCeeEeeccCCceEEEEEEecCcc-----------------------------eeeeeeeecccCceEEEEECCCCCeEE
Confidence 456777777777777776542221 123457899999999999999999999
Q ss_pred EEeCCCeEEEEeCCCCceEEEEec-cCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecC
Q 005096 161 TGSQSGEFTLWNGQSFNFEMILQA-HDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRT 239 (715)
Q Consensus 161 tgs~dg~I~Iwd~~~~~~~~~l~~-h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd 239 (715)
+|+.|..+++||+.++.....+.. +...+.+++|.||+..+++|+.|+.|..||++.+....-.......|.+++++.|
T Consensus 286 aCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~D 365 (519)
T KOG0293|consen 286 ACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYD 365 (519)
T ss_pred ecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCC
Confidence 999999999999999988777653 4688999999999999999999999999999866533322233457999999999
Q ss_pred CCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCc--eEE
Q 005096 240 DLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNM--VLC 317 (715)
Q Consensus 240 ~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~--I~s 317 (715)
|+++++.+.|..|++++.++......+. ....|++++++.|++++++.-.+..|.+||++..+.++++.+|+.. |..
T Consensus 366 gk~vl~v~~d~~i~l~~~e~~~dr~lis-e~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIr 444 (519)
T KOG0293|consen 366 GKYVLLVTVDKKIRLYNREARVDRGLIS-EEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIR 444 (519)
T ss_pred CcEEEEEecccceeeechhhhhhhcccc-ccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEE
Confidence 9999999999999999998765544443 5678999999999999999999999999999998889898888754 333
Q ss_pred EEEcC-CCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCC
Q 005096 318 VKWNQ-NGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGH 386 (715)
Q Consensus 318 l~~sp-dg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~ 386 (715)
-+|-- +..++++|++|+.|+||+.++++.+.++.+|...|++++|+|.+..++|++++||+|+||....
T Consensus 445 SCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 445 SCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred eccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 34543 5689999999999999999999999999999999999999999999999999999999997753
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.4e-31 Score=268.22 Aligned_cols=284 Identities=21% Similarity=0.380 Sum_probs=254.3
Q ss_pred EecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc--eEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005096 138 TSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFN--FEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQN 215 (715)
Q Consensus 138 ~~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~--~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~ 215 (715)
..+..|.+.|..+.|-.+...|++|+.|..|++|+....+ .+.++.+..+.|+++.|..+++++++++.|+.+++|++
T Consensus 169 ~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnv 248 (459)
T KOG0288|consen 169 FVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNV 248 (459)
T ss_pred hhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeec
Confidence 4577899999999999998999999999999999977665 67788888899999999999999999999999999999
Q ss_pred CCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEE
Q 005096 216 NMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVK 295 (715)
Q Consensus 216 ~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~ 295 (715)
+...+..++.+|.+.|+++.|......+++++.|.+|++||+.+..+.+++. ....+.+|+.+ ...++++-.|++|+
T Consensus 249 d~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l-~~S~cnDI~~~--~~~~~SgH~DkkvR 325 (459)
T KOG0288|consen 249 DSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVL-PGSQCNDIVCS--ISDVISGHFDKKVR 325 (459)
T ss_pred cchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheecccc-ccccccceEec--ceeeeecccccceE
Confidence 9999999999999999999999887779999999999999999887777665 34456667666 56788999999999
Q ss_pred EEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecC----CCCeEEEEEccCCCCEEE
Q 005096 296 LWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGH----RKDVTALAWHPFHEEYFV 371 (715)
Q Consensus 296 iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h----~~~V~~l~~sp~~~~~l~ 371 (715)
+||+++..++.....+. .|+++..+.++..|++++.|.++.+.|+++......+... ....+.+.||| ++.|++
T Consensus 326 fwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSp-d~~Yva 403 (459)
T KOG0288|consen 326 FWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSP-DGSYVA 403 (459)
T ss_pred EEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECC-CCceee
Confidence 99999999998887554 8999999999999999999999999999999888877632 34589999999 999999
Q ss_pred EEeCCCcEEEEEcCCCCceEEEeeccCC-CEEEEEEcCCCCEEEEEECCCeEEEEe
Q 005096 372 SGSLDGSIFHWLVGHETPQVEIHNVHDN-TVWDLAWHPIGYLLCSGSNDHTTKFWC 426 (715)
Q Consensus 372 sgs~DG~I~iwd~~~~~~~~~~~~~h~~-~V~~l~~spdg~~L~sgs~Dg~I~iWd 426 (715)
+|+.||.|+||++.+++....+...+.. .|++++|++.|..|++++.++.+.+|.
T Consensus 404 AGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 404 AGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred eccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 9999999999999999887777666655 799999999999999999999999993
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-31 Score=266.56 Aligned_cols=288 Identities=21% Similarity=0.343 Sum_probs=246.3
Q ss_pred EEecCCCCccEEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005096 137 HTSLNKNRCSINRVLWTPTG-RRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQN 215 (715)
Q Consensus 137 ~~~l~~H~~~I~~l~~spdg-~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~ 215 (715)
.-.|.+|.+.|.|++=+|.. ..+++|+.||.|+|||+...++..++..|++.|..|++.. ..+++++.|.+|+.|.+
T Consensus 59 v~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~ 136 (433)
T KOG0268|consen 59 VGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKI 136 (433)
T ss_pred hhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeec
Confidence 34679999999999999987 7899999999999999999999999999999999999986 67889999999999988
Q ss_pred CCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCC-EEEEEeCCCcE
Q 005096 216 NMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKS-LLVSGGKDSLV 294 (715)
Q Consensus 216 ~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~-~L~sgs~Dg~I 294 (715)
+.. ...++ ..+..+..|.-+..++.+++|+. .|.|||......+..+......|.++.|+|... +|+++..|+.|
T Consensus 137 ~~~-p~~ti-lg~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsI 212 (433)
T KOG0268|consen 137 DGP-PLHTI-LGKSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSI 212 (433)
T ss_pred cCC-cceee-eccccccccccccccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCce
Confidence 764 33333 33556777777777888998886 499999999899999998889999999999764 67777799999
Q ss_pred EEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCe-EEEEeecCCCCeEEEEEccCCCCEEEEE
Q 005096 295 KLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMK-ELESFRGHRKDVTALAWHPFHEEYFVSG 373 (715)
Q Consensus 295 ~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~-~~~~~~~h~~~V~~l~~sp~~~~~l~sg 373 (715)
.|||++++..+..+. ....-+.|+|+|..-.++++++|..++.||++... .+..+.+|.+.|.++.|+| .+.-|++|
T Consensus 213 vLyD~R~~~Pl~KVi-~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsp-tG~Efvsg 290 (433)
T KOG0268|consen 213 VLYDLRQASPLKKVI-LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSP-TGQEFVSG 290 (433)
T ss_pred EEEecccCCccceee-eeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCC-Ccchhccc
Confidence 999999998887765 34456789999988889999999999999999754 5788889999999999999 78899999
Q ss_pred eCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCCCCC
Q 005096 374 SLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGD 432 (715)
Q Consensus 374 s~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~~ 432 (715)
+.|.+|+||.++............-..|.|+.|+-|.++|++||+|+.|++|.-+..++
T Consensus 291 syDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Asek 349 (433)
T KOG0268|consen 291 SYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEK 349 (433)
T ss_pred cccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecchhhh
Confidence 99999999999877654333333345799999999999999999999999998765443
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.7e-29 Score=274.94 Aligned_cols=294 Identities=23% Similarity=0.401 Sum_probs=245.2
Q ss_pred ecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 005096 139 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN 218 (715)
Q Consensus 139 ~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~ 218 (715)
.+..|.++|..|+|++++.++++|+.|-+|+||+.++.+++.++.+|-+-|..+.|++.--+|+++++|-+|+||++.+.
T Consensus 46 rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr 125 (1202)
T KOG0292|consen 46 RFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSR 125 (1202)
T ss_pred hhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCe-----------------------------eEEEeccc
Q 005096 219 NVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQ-----------------------------EERSLTGH 269 (715)
Q Consensus 219 ~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~-----------------------------~~~~l~~~ 269 (715)
+++..+.+|...|.|..|+|....++++|-|-+|||||+...+ ....+.+|
T Consensus 126 ~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGH 205 (1202)
T KOG0292|consen 126 KCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGH 205 (1202)
T ss_pred ceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeeccc
Confidence 9999999999999999999999999999999999999984211 13456789
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCc--eeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEE
Q 005096 270 GWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGR--ELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKEL 347 (715)
Q Consensus 270 ~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~--~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~ 347 (715)
...|+-++|+|.-.+|++|++|..|++|..+..+ .+-+..+|.+.|+|+-|++..++|++.++|++|+|||+...+.+
T Consensus 206 DRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v 285 (1202)
T KOG0292|consen 206 DRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSV 285 (1202)
T ss_pred ccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccce
Confidence 9999999999999999999999999999987554 34556789999999999999999999999999999999999999
Q ss_pred EEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEE---------------e------------ecc---
Q 005096 348 ESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEI---------------H------------NVH--- 397 (715)
Q Consensus 348 ~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~---------------~------------~~h--- 397 (715)
.+|+........++.+| ..+++++|-+.| +.||.++.+.....+ . ..+
T Consensus 286 ~tfrrendRFW~laahP-~lNLfAAgHDsG-m~VFkleRErpa~~v~~n~LfYvkd~~i~~~d~~t~~d~~v~~lr~~g~ 363 (1202)
T KOG0292|consen 286 QTFRRENDRFWILAAHP-ELNLFAAGHDSG-MIVFKLERERPAYAVNGNGLFYVKDRFIRSYDLRTQKDTAVASLRRPGT 363 (1202)
T ss_pred eeeeccCCeEEEEEecC-CcceeeeecCCc-eEEEEEcccCceEEEcCCEEEEEccceEEeeeccccccceeEeccCCCc
Confidence 99998899999999999 778777765444 445554422211110 0 001
Q ss_pred -CCCEEEEEEcCCCCEEEEE-E-CCCeEEEEecCCCCCcc
Q 005096 398 -DNTVWDLAWHPIGYLLCSG-S-NDHTTKFWCRNRPGDTA 434 (715)
Q Consensus 398 -~~~V~~l~~spdg~~L~sg-s-~Dg~I~iWdl~~~~~~~ 434 (715)
...+.+++++|....+..+ . +.|...++.+.+..+..
T Consensus 364 ~~~~~~smsYNpae~~vlics~~~n~~y~L~~ipk~~~~~ 403 (1202)
T KOG0292|consen 364 LWQPPRSLSYNPAENAVLICSNLDNGEYELVQIPKDSDGV 403 (1202)
T ss_pred ccCCcceeeeccccCeEEEEeccCCCeEEEEEecCccccc
Confidence 2457788888875544444 3 35666677765554433
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-30 Score=270.22 Aligned_cols=288 Identities=15% Similarity=0.302 Sum_probs=248.4
Q ss_pred CCCCcccchhhhhcccccccceEeeehhhheeeEEEEEeccCCCccccccCchhhhcCccceeecCCCCCceeeeEEEEe
Q 005096 60 PYDAHGDSFAAKRMRKLTQRRAVDYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSFAAKFVHTS 139 (715)
Q Consensus 60 ~~~~h~~~~~~~r~~~~~~~~~~~~~~~~~~~~~irvW~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 139 (715)
.+.+|+..+.+.++.. ...-.+.+...+..|+||+..... -+.++
T Consensus 209 ~~~gH~kgvsai~~fp----~~~hLlLS~gmD~~vklW~vy~~~-------------------------------~~lrt 253 (503)
T KOG0282|consen 209 NLSGHTKGVSAIQWFP----KKGHLLLSGGMDGLVKLWNVYDDR-------------------------------RCLRT 253 (503)
T ss_pred eccCCccccchhhhcc----ceeeEEEecCCCceEEEEEEecCc-------------------------------ceehh
Confidence 4688888888877754 345566677788999999875421 12346
Q ss_pred cCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCC-CEEEEEeCCCcEEEEeCCCC
Q 005096 140 LNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHND-NWMVSGDDGGAIKYWQNNMN 218 (715)
Q Consensus 140 l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg-~~L~tgs~dg~I~iwd~~~~ 218 (715)
+.+|+..|.+++|+.+|..+++++.|+.|++||+++++++..+.. ...++|+.|.+|+ +.+++|+.|+.|+.||++++
T Consensus 254 f~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~-~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~ 332 (503)
T KOG0282|consen 254 FKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHL-DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSG 332 (503)
T ss_pred hhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEec-CCCceeeecCCCCCcEEEEecCCCcEEEEeccch
Confidence 889999999999999999999999999999999999999988864 5678999999998 88999999999999999999
Q ss_pred ceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEec-ccCCceEEEEEcCCCCEEEEEeCCCcEEEE
Q 005096 219 NVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLT-GHGWDVKSVDWHPTKSLLVSGGKDSLVKLW 297 (715)
Q Consensus 219 ~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~-~~~~~I~si~~spdg~~L~sgs~Dg~I~iw 297 (715)
+++..+..|-..|..|.|.++++++++.++|++|+||+.+....+..+. .+....-+|..+|+++++++-+.|+.|.||
T Consensus 333 kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~if 412 (503)
T KOG0282|consen 333 KVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIF 412 (503)
T ss_pred HHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEE
Confidence 9999999999999999999999999999999999999998766554433 233456799999999999999999999999
Q ss_pred ECCCC---ceeEEeccCC--CceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEE
Q 005096 298 DAKSG---RELCSFHGHK--NMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVS 372 (715)
Q Consensus 298 Dl~s~---~~~~~~~~~~--~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~s 372 (715)
.+... .....+++|. +.-..+.|||||++|++|+.||.+.+||.++.+.+..++.|+..+..+.|+|.....+|+
T Consensus 413 s~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat 492 (503)
T KOG0282|consen 413 STVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVAT 492 (503)
T ss_pred ecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEe
Confidence 87542 2233455554 345678999999999999999999999999999999999999999999999988899999
Q ss_pred EeCCCcEEEEE
Q 005096 373 GSLDGSIFHWL 383 (715)
Q Consensus 373 gs~DG~I~iwd 383 (715)
|+.||.|++||
T Consensus 493 ~~w~G~Ikiwd 503 (503)
T KOG0282|consen 493 CGWDGLIKIWD 503 (503)
T ss_pred cccCceeEecC
Confidence 99999999996
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-29 Score=272.76 Aligned_cols=280 Identities=23% Similarity=0.379 Sum_probs=243.8
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeee
Q 005096 145 CSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANK 224 (715)
Q Consensus 145 ~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~ 224 (715)
-..+-++|+ ..+.|++|... .|++|+..+++.......++..|+++.|+++|++|++|..+|.|.|||..+.+.+..+
T Consensus 178 fY~nlldWs-s~n~laValg~-~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~ 255 (484)
T KOG0305|consen 178 FYLNLLDWS-SANVLAVALGQ-SVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTL 255 (484)
T ss_pred HhhhHhhcc-cCCeEEEEecc-eEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccc
Confidence 345567888 44467766554 6999999999988877777899999999999999999999999999999999888888
Q ss_pred cC-CCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEE-ecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 005096 225 SA-HKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERS-LTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSG 302 (715)
Q Consensus 225 ~~-h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~-l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~ 302 (715)
.. |...|-+++|. +..+.+|+.|+.|.++|++..+.... +.+|...|..++|++|+++|++|+.|+.|.|||....
T Consensus 256 ~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~ 333 (484)
T KOG0305|consen 256 RGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSP 333 (484)
T ss_pred cCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCc
Confidence 88 99999999997 77899999999999999987665554 8889999999999999999999999999999999888
Q ss_pred ceeEEeccCCCceEEEEEcC-CCCEEEEEE--CCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEe-CCCc
Q 005096 303 RELCSFHGHKNMVLCVKWNQ-NGNWVLTAS--KDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGS-LDGS 378 (715)
Q Consensus 303 ~~~~~~~~~~~~I~sl~~sp-dg~~Lasgs--~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs-~DG~ 378 (715)
+.+..+..|.+.|.+++|+| ...+||+|+ .|++|++||..+++.+..+. ....|.+|.|++...+++.+.+ .++.
T Consensus 334 ~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n~ 412 (484)
T KOG0305|consen 334 EPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSENQ 412 (484)
T ss_pred cccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccc-cCCceeeEEEcCCCCEEEEecCCCCCc
Confidence 88999999999999999999 667888864 79999999999999888876 6778999999995555555543 5678
Q ss_pred EEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCCC
Q 005096 379 IFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRP 430 (715)
Q Consensus 379 I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~ 430 (715)
|.||++.+.+. ...+.+|...|..++++|||..|++|+.|.++++|++-..
T Consensus 413 i~lw~~ps~~~-~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 413 ITLWKYPSMKL-VAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred EEEEeccccce-eeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 99999988444 4555689999999999999999999999999999998654
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-29 Score=263.22 Aligned_cols=290 Identities=21% Similarity=0.305 Sum_probs=245.8
Q ss_pred ecCCCCccEEEEEEcCCCCE-EEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 005096 139 SLNKNRCSINRVLWTPTGRR-LITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNM 217 (715)
Q Consensus 139 ~l~~H~~~I~~l~~spdg~~-Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~ 217 (715)
.+....+.|++|+|+|...+ +|+++ .-.|.||+..+....+.+......|.+++|..||++|++|+..|.|+|||..+
T Consensus 21 ~~~ke~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~ 99 (487)
T KOG0310|consen 21 PVHKEHNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKS 99 (487)
T ss_pred ccccccCcceeEecCCCCCCceEEec-ccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEecccc
Confidence 34445678999999996644 44443 34699999999888888888899999999999999999999999999999777
Q ss_pred CceeeeecCCCCCeEEEEEecCC-CEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCC-EEEEEeCCCcEE
Q 005096 218 NNVKANKSAHKESVRDLSFCRTD-LKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKS-LLVSGGKDSLVK 295 (715)
Q Consensus 218 ~~~~~~~~~h~~~I~~l~~spd~-~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~-~L~sgs~Dg~I~ 295 (715)
...+..+..|...|..+.|++.+ ..|++|++|+.+++||+.+......+.+|.+.|+|.+|++-.. ++++|+.||+|+
T Consensus 100 r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vr 179 (487)
T KOG0310|consen 100 RVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVR 179 (487)
T ss_pred HHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEE
Confidence 77888889999999999999955 5678889999999999999888778999999999999998654 899999999999
Q ss_pred EEECCCC-ceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCe-EEEEeecCCCCeEEEEEccCCCCEEEEE
Q 005096 296 LWDAKSG-RELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMK-ELESFRGHRKDVTALAWHPFHEEYFVSG 373 (715)
Q Consensus 296 iwDl~s~-~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~-~~~~~~~h~~~V~~l~~sp~~~~~l~sg 373 (715)
+||+++. ..+.++. |...|.++.+-+.|..|++++ ...|+|||+.+|. .+..+..|...|+|+++.. ++..|+++
T Consensus 180 l~DtR~~~~~v~eln-hg~pVe~vl~lpsgs~iasAg-Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s-~~~rLlS~ 256 (487)
T KOG0310|consen 180 LWDTRSLTSRVVELN-HGCPVESVLALPSGSLIASAG-GNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLAS-DSTRLLSG 256 (487)
T ss_pred EEEeccCCceeEEec-CCCceeeEEEcCCCCEEEEcC-CCeEEEEEecCCceehhhhhcccceEEEEEeec-CCceEeec
Confidence 9999987 6666666 899999999999999999886 5689999999654 5555666999999999998 77999999
Q ss_pred eCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCCCCCcc
Q 005096 374 SLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGDTA 434 (715)
Q Consensus 374 s~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~~~~ 434 (715)
+-|+.|++||+.+-+...... -.++|.+++.++++..++.|-.||.+.+-+...+.+..
T Consensus 257 sLD~~VKVfd~t~~Kvv~s~~--~~~pvLsiavs~dd~t~viGmsnGlv~~rr~~~k~k~s 315 (487)
T KOG0310|consen 257 SLDRHVKVFDTTNYKVVHSWK--YPGPVLSIAVSPDDQTVVIGMSNGLVSIRRREVKKKPS 315 (487)
T ss_pred ccccceEEEEccceEEEEeee--cccceeeEEecCCCceEEEecccceeeeehhhcccCCC
Confidence 999999999976554443333 46799999999999999999999999887654444433
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.4e-29 Score=250.40 Aligned_cols=245 Identities=20% Similarity=0.290 Sum_probs=215.7
Q ss_pred EecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 005096 138 TSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNM 217 (715)
Q Consensus 138 ~~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~ 217 (715)
..+.+|+++|+|+.||.||.+||||+-+|.|+||+..++.....+...-..|.-+.|+|.+..|+.|+.||.|.+|.+.+
T Consensus 100 ~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~ 179 (399)
T KOG0296|consen 100 GELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPS 179 (399)
T ss_pred eEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCC
Confidence 36789999999999999999999999999999999999999888876778899999999999999999999999999999
Q ss_pred CceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecc-----------------------------
Q 005096 218 NNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTG----------------------------- 268 (715)
Q Consensus 218 ~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~----------------------------- 268 (715)
......+.+|...+++=.|.++|++++++..||+|++||..++..+..+..
T Consensus 180 ~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~ 259 (399)
T KOG0296|consen 180 QALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACG 259 (399)
T ss_pred cceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEE
Confidence 888889999999999999999999999999999999999988776655431
Q ss_pred ----------------------cCC---ceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCceEEEEEcCC
Q 005096 269 ----------------------HGW---DVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQN 323 (715)
Q Consensus 269 ----------------------~~~---~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spd 323 (715)
+.. .|.++.|+.+=.+.++|+-||+|.|||+...+....+. |...|+.+.|.+
T Consensus 260 ~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~-he~~V~~l~w~~- 337 (399)
T KOG0296|consen 260 VNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICE-HEDGVTKLKWLN- 337 (399)
T ss_pred EccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheecc-CCCceEEEEEcC-
Confidence 001 12222333334567889999999999999776555444 888899999998
Q ss_pred CCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcC
Q 005096 324 GNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVG 385 (715)
Q Consensus 324 g~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~ 385 (715)
..+|++++.+|.|++||.|+|.++.++.+|...|.++++++ +.++++|++.|++.+||++.
T Consensus 338 t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~-~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 338 TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSP-QKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcC-CCcEEEEecCCCeEEEEecC
Confidence 78999999999999999999999999999999999999999 89999999999999999874
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-28 Score=266.60 Aligned_cols=271 Identities=22% Similarity=0.362 Sum_probs=226.9
Q ss_pred eccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCee
Q 005096 183 QAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQE 262 (715)
Q Consensus 183 ~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~ 262 (715)
.+|...|.+++++.|...+++|+ .+.|+||+..+.++++++... .+.+..|.|.++++++|..+|.+.+||+.+...
T Consensus 370 ~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi~~~--y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l 446 (888)
T KOG0306|consen 370 GGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTLKCIRTITCG--YILASKFVPGDRYIVLGTKNGELQVFDLASASL 446 (888)
T ss_pred ccchhheeEEEeecCceeeeecC-CCcEEEEEccCcceeEEeccc--cEEEEEecCCCceEEEeccCCceEEEEeehhhh
Confidence 46778899999998776666654 578999999999999888654 889999999999999999999999999999999
Q ss_pred EEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCC-----Cc--eeEEec-----cCCCceEEEEEcCCCCEEEEE
Q 005096 263 ERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKS-----GR--ELCSFH-----GHKNMVLCVKWNQNGNWVLTA 330 (715)
Q Consensus 263 ~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s-----~~--~~~~~~-----~~~~~I~sl~~spdg~~Lasg 330 (715)
+.++.+|.+.|++++.++|++.+++|+.|.+|++||..- +. .+..++ .....|.|+++|||+++|+++
T Consensus 447 ~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVs 526 (888)
T KOG0306|consen 447 VETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVS 526 (888)
T ss_pred hhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEE
Confidence 999999999999999999999999999999999999742 11 111111 245779999999999999999
Q ss_pred ECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCC
Q 005096 331 SKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIG 410 (715)
Q Consensus 331 s~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg 410 (715)
--|.+|+||-+++.+...++.+|.-+|.|+.+++ +..+|+||+.|.+|+||-++-+.+-..++ +|++.|.++.|.|..
T Consensus 527 LLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~-DSklivTgSADKnVKiWGLdFGDCHKS~f-AHdDSvm~V~F~P~~ 604 (888)
T KOG0306|consen 527 LLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISP-DSKLIVTGSADKNVKIWGLDFGDCHKSFF-AHDDSVMSVQFLPKT 604 (888)
T ss_pred eccCeEEEEEecceeeeeeecccccceeEEeccC-CcCeEEeccCCCceEEeccccchhhhhhh-cccCceeEEEEcccc
Confidence 9999999999999999999999999999999999 89999999999999999988777665555 699999999999999
Q ss_pred CEEEEEECCCeEEEEecCCCCCcccccccccCCccccceeeEEeecCCCCccCCC
Q 005096 411 YLLCSGSNDHTTKFWCRNRPGDTARDKFNMGQNQGYGEQNAVFAGRMPGNFPLPE 465 (715)
Q Consensus 411 ~~L~sgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 465 (715)
.++.+++.|+.|+-||-++-..... ..++-....+++...+|.+.+..
T Consensus 605 ~~FFt~gKD~kvKqWDg~kFe~iq~-------L~~H~~ev~cLav~~~G~~vvs~ 652 (888)
T KOG0306|consen 605 HLFFTCGKDGKVKQWDGEKFEEIQK-------LDGHHSEVWCLAVSPNGSFVVSS 652 (888)
T ss_pred eeEEEecCcceEEeechhhhhhhee-------eccchheeeeeEEcCCCCeEEec
Confidence 9999999999999998754333222 12333444455555555444443
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-28 Score=292.27 Aligned_cols=262 Identities=20% Similarity=0.305 Sum_probs=223.6
Q ss_pred CCeEEEEeCCCCceEEEE-----eccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc--------eeeeecCCCCCe
Q 005096 165 SGEFTLWNGQSFNFEMIL-----QAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNN--------VKANKSAHKESV 231 (715)
Q Consensus 165 dg~I~Iwd~~~~~~~~~l-----~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~--------~~~~~~~h~~~I 231 (715)
+|.+++|+..+.+....+ ..|...|.+++|++++++|++|+.|+.|+||+++... ....+ .+...|
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~-~~~~~v 535 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVEL-ASRSKL 535 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEe-cccCce
Confidence 677888988876655443 3488999999999999999999999999999975421 11122 235678
Q ss_pred EEEEEec-CCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeEEec
Q 005096 232 RDLSFCR-TDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHP-TKSLLVSGGKDSLVKLWDAKSGRELCSFH 309 (715)
Q Consensus 232 ~~l~~sp-d~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~sp-dg~~L~sgs~Dg~I~iwDl~s~~~~~~~~ 309 (715)
.+++|++ ++.+|++++.|++|+|||+.+++.+..+.+|...|++++|++ ++.+|++++.|++|+|||++++..+..+.
T Consensus 536 ~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~ 615 (793)
T PLN00181 536 SGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIK 615 (793)
T ss_pred eeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEe
Confidence 9999987 468899999999999999999999999999999999999996 78899999999999999999998888887
Q ss_pred cCCCceEEEEEc-CCCCEEEEEECCCeEEEEECCCCe-EEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCC
Q 005096 310 GHKNMVLCVKWN-QNGNWVLTASKDQIIKLYDIRAMK-ELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHE 387 (715)
Q Consensus 310 ~~~~~I~sl~~s-pdg~~Lasgs~dg~I~iwDl~t~~-~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~ 387 (715)
. ...|.++.|+ +++.+|++|+.|+.|++||+++.+ .+..+.+|...|+++.|. ++.+|++++.|++|+|||++..
T Consensus 616 ~-~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~--~~~~lvs~s~D~~ikiWd~~~~ 692 (793)
T PLN00181 616 T-KANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV--DSSTLVSSSTDNTLKLWDLSMS 692 (793)
T ss_pred c-CCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe--CCCEEEEEECCCEEEEEeCCCC
Confidence 4 4679999995 579999999999999999998866 467788999999999997 5788999999999999999753
Q ss_pred -----CceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCCC
Q 005096 388 -----TPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRP 430 (715)
Q Consensus 388 -----~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~ 430 (715)
...+..+.+|...+++++|++++.+|++|+.|+.|++|+....
T Consensus 693 ~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~ 740 (793)
T PLN00181 693 ISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFP 740 (793)
T ss_pred ccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCC
Confidence 2344556679999999999999999999999999999997654
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-29 Score=240.37 Aligned_cols=251 Identities=22% Similarity=0.337 Sum_probs=223.5
Q ss_pred eEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEEC
Q 005096 178 FEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDF 257 (715)
Q Consensus 178 ~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl 257 (715)
....+..+.+.|..+.|+-||+|.++++.|.+|++|+...+.++.++.+|...|.+++.+.|+..|++|+.|..|.+||+
T Consensus 9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV 88 (307)
T KOG0316|consen 9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDV 88 (307)
T ss_pred hceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEc
Confidence 45667889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC--ceeEEeccCCCceEEEEEcCCCCEEEEEECCCe
Q 005096 258 ARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSG--RELCSFHGHKNMVLCVKWNQNGNWVLTASKDQI 335 (715)
Q Consensus 258 ~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~--~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~ 335 (715)
++++.++.+.+|...|+.+.|+.+...+++|+.|..|++||.++. +.+..+......|.+|.++ +..|++|+.||+
T Consensus 89 ~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGt 166 (307)
T KOG0316|consen 89 NTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGT 166 (307)
T ss_pred ccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCCc
Confidence 999999999999999999999999999999999999999999864 6778888888899999986 567999999999
Q ss_pred EEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCC--EEEEEEcCCCCEE
Q 005096 336 IKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNT--VWDLAWHPIGYLL 413 (715)
Q Consensus 336 I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~--V~~l~~spdg~~L 413 (715)
++.||++.+.....+- ...|++++|++ +++..++++.|++|++.|-.+++.+.. ..+|.+. -..++++.....+
T Consensus 167 vRtydiR~G~l~sDy~--g~pit~vs~s~-d~nc~La~~l~stlrLlDk~tGklL~s-YkGhkn~eykldc~l~qsdthV 242 (307)
T KOG0316|consen 167 VRTYDIRKGTLSSDYF--GHPITSVSFSK-DGNCSLASSLDSTLRLLDKETGKLLKS-YKGHKNMEYKLDCCLNQSDTHV 242 (307)
T ss_pred EEEEEeecceeehhhc--CCcceeEEecC-CCCEEEEeeccceeeecccchhHHHHH-hcccccceeeeeeeecccceeE
Confidence 9999999998776654 56799999999 889999999999999999988776543 3456554 3456777778899
Q ss_pred EEEECCCeEEEEecCCCCCcc
Q 005096 414 CSGSNDHTTKFWCRNRPGDTA 434 (715)
Q Consensus 414 ~sgs~Dg~I~iWdl~~~~~~~ 434 (715)
++|++||.|++||+.......
T Consensus 243 ~sgSEDG~Vy~wdLvd~~~~s 263 (307)
T KOG0316|consen 243 FSGSEDGKVYFWDLVDETQIS 263 (307)
T ss_pred EeccCCceEEEEEeccceeee
Confidence 999999999999996544433
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-29 Score=277.91 Aligned_cols=299 Identities=17% Similarity=0.273 Sum_probs=224.8
Q ss_pred ceeeeEEEEecC-CCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccC----------CCEEEEEEcC--
Q 005096 130 SFAAKFVHTSLN-KNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHD----------HAIRSMVWSH-- 196 (715)
Q Consensus 130 ~~~~~~~~~~l~-~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~----------~~V~~l~~sp-- 196 (715)
.+...++...+. .|++.|.++.||+||+|||+|+.|+.|+||.+...+....-.... +.+.-+..+.
T Consensus 252 elsal~~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~ 331 (712)
T KOG0283|consen 252 ELSALTVVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEK 331 (712)
T ss_pred cceeeEEeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccc
Confidence 344555666777 999999999999999999999999999999876633311111000 0011111111
Q ss_pred -CCC--EEEEEeCCCcEEEEeCC----CCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEeccc
Q 005096 197 -NDN--WMVSGDDGGAIKYWQNN----MNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGH 269 (715)
Q Consensus 197 -dg~--~L~tgs~dg~I~iwd~~----~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~ 269 (715)
.++ ..-.+.....+ +.+.. ..+....+.+|.+.|.+|.|+.+ .+|++++.|.+|++|++...+++..|. |
T Consensus 332 ~~~~~s~~~~~~~s~~~-~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F~-H 408 (712)
T KOG0283|consen 332 ISSRTSSSRKGSQSPCV-LLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVFS-H 408 (712)
T ss_pred ccccccccccccCCccc-cCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEEe-c
Confidence 001 11112222222 22211 13456677899999999999965 689999999999999999999999987 9
Q ss_pred CCceEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEE
Q 005096 270 GWDVKSVDWHP-TKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELE 348 (715)
Q Consensus 270 ~~~I~si~~sp-dg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~ 348 (715)
.+-|+||+|+| |.++|++|+-|+.|+||++...+.+ .+.....-|++++|.|||++.++|+.+|.+++|+++..+...
T Consensus 409 ndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv-~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~ 487 (712)
T KOG0283|consen 409 NDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVV-DWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVS 487 (712)
T ss_pred CCeeEEEEecccCCCcEeecccccceEEeecCcCeeE-eehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEE
Confidence 99999999999 6789999999999999999866544 444456889999999999999999999999999999877765
Q ss_pred Eeec--C------CCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccC-CCEEEEEEcCCCCEEEEEECC
Q 005096 349 SFRG--H------RKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHD-NTVWDLAWHPIGYLLCSGSND 419 (715)
Q Consensus 349 ~~~~--h------~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~-~~V~~l~~spdg~~L~sgs~D 419 (715)
.+.. + ...|+.+.|.+.+.+.|++.+.|..|+|||.++...+.++...+. ..-....|+.||++|+++++|
T Consensus 488 ~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seD 567 (712)
T KOG0283|consen 488 DFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASED 567 (712)
T ss_pred eeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecC
Confidence 4431 1 237999999997777788889999999999977766655553333 234577899999999999999
Q ss_pred CeEEEEecCCCCC
Q 005096 420 HTTKFWCRNRPGD 432 (715)
Q Consensus 420 g~I~iWdl~~~~~ 432 (715)
..|+||+++....
T Consensus 568 s~VYiW~~~~~~~ 580 (712)
T KOG0283|consen 568 SWVYIWKNDSFNS 580 (712)
T ss_pred ceEEEEeCCCCcc
Confidence 9999999865544
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3e-29 Score=259.91 Aligned_cols=283 Identities=18% Similarity=0.303 Sum_probs=246.6
Q ss_pred ecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC---ceEEEEe--ccCCCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 005096 139 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSF---NFEMILQ--AHDHAIRSMVWSHNDNWMVSGDDGGAIKYW 213 (715)
Q Consensus 139 ~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~---~~~~~l~--~h~~~V~~l~~spdg~~L~tgs~dg~I~iw 213 (715)
....|..-|.++.+|...++++||+. |.|+|||+..- ..+..+. ..+..|+++.+.+|++.|++|++-.+|.||
T Consensus 414 ~tL~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiW 492 (705)
T KOG0639|consen 414 NTLAHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIW 492 (705)
T ss_pred hhhccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeee
Confidence 34568999999999999999999986 56999998642 2233333 245679999999999999999999999999
Q ss_pred eCCCCc--eeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCC
Q 005096 214 QNNMNN--VKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKD 291 (715)
Q Consensus 214 d~~~~~--~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~D 291 (715)
|+.... ++..+....-.+.++++++|.+..++|+.||.|.|||+.+...++.|.+|.+.+.||.++.||..|.+|+-|
T Consensus 493 DLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlD 572 (705)
T KOG0639|consen 493 DLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLD 572 (705)
T ss_pred eccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCc
Confidence 987654 444444555678889999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEE
Q 005096 292 SLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFV 371 (715)
Q Consensus 292 g~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~ 371 (715)
++||.||+++++.+.... ..+.|.++.++|+++||++|-.++.|.|.... +.....+..|++.|.++.|.. .+++++
T Consensus 573 ntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMens~vevlh~s-kp~kyqlhlheScVLSlKFa~-cGkwfv 649 (705)
T KOG0639|consen 573 NTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTS-KPEKYQLHLHESCVLSLKFAY-CGKWFV 649 (705)
T ss_pred cceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecccCcEEEEecC-CccceeecccccEEEEEEecc-cCceee
Confidence 999999999998776654 67789999999999999999999999998865 555667778999999999999 899999
Q ss_pred EEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEec
Q 005096 372 SGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCR 427 (715)
Q Consensus 372 sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl 427 (715)
+.+.|..+..|..-.+..++...+ .+.|.++.++.|.++|+||+.|....||.+
T Consensus 650 StGkDnlLnawrtPyGasiFqskE--~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 650 STGKDNLLNAWRTPYGASIFQSKE--SSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred ecCchhhhhhccCccccceeeccc--cCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 999999999999988887766654 678999999999999999999999999875
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.8e-29 Score=254.62 Aligned_cols=283 Identities=21% Similarity=0.360 Sum_probs=253.3
Q ss_pred CccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeee
Q 005096 144 RCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKAN 223 (715)
Q Consensus 144 ~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~ 223 (715)
.-.|+++...+....++||+.|..+.++|..+...+.++++|...|+.+.|+++...+++++.|..|+||..........
T Consensus 219 ~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~ 298 (506)
T KOG0289|consen 219 TPGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTS 298 (506)
T ss_pred CCCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccc
Confidence 35789999998888999999999999999999999999999999999999999999999999999999999988888888
Q ss_pred ecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEeccc--CCceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 005096 224 KSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGH--GWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKS 301 (715)
Q Consensus 224 ~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~--~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s 301 (715)
...|...|+.+..++.+.||++++.|+++.+.|++++..+...... .-.+++.+|+|||.+|.+|..|+.|+|||+++
T Consensus 299 ~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks 378 (506)
T KOG0289|consen 299 SRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKS 378 (506)
T ss_pred cccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCC
Confidence 8899999999999999999999999999999999999888776643 34589999999999999999999999999999
Q ss_pred CceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCC-CCeEEEEEccCCCCEEEEEeCCCcEE
Q 005096 302 GRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHR-KDVTALAWHPFHEEYFVSGSLDGSIF 380 (715)
Q Consensus 302 ~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~-~~V~~l~~sp~~~~~l~sgs~DG~I~ 380 (715)
...+..|.+|.+.|..|+|+.+|-||+++++|+.|++||+|..+.+.++...+ ..|.++.|.. .+.+|+.++.|-.|+
T Consensus 379 ~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~-SGt~L~~~g~~l~Vy 457 (506)
T KOG0289|consen 379 QTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQ-SGTYLGIAGSDLQVY 457 (506)
T ss_pred ccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcC-CCCeEEeecceeEEE
Confidence 99999999999999999999999999999999999999999999888877443 4799999998 888999888877777
Q ss_pred EEEcCCCC-ceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEec
Q 005096 381 HWLVGHET-PQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCR 427 (715)
Q Consensus 381 iwd~~~~~-~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl 427 (715)
+++-.+.. ........|.+..+++.|..+..+|++++.|..++|+.+
T Consensus 458 ~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 458 ICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred EEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 77644332 233445567788999999999999999999999999865
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-27 Score=225.13 Aligned_cols=287 Identities=22% Similarity=0.393 Sum_probs=241.5
Q ss_pred ecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCC------C---------ceEEEEeccCCCEEEEEEcCCCCEEEE
Q 005096 139 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQS------F---------NFEMILQAHDHAIRSMVWSHNDNWMVS 203 (715)
Q Consensus 139 ~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~------~---------~~~~~l~~h~~~V~~l~~spdg~~L~t 203 (715)
.+...+..|.+++|+|.|.+.++|+...+++|..... . ...+.-+.|.+.|.|.+|+++|.+|++
T Consensus 27 ~~l~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliat 106 (350)
T KOG0641|consen 27 NILEDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIAT 106 (350)
T ss_pred EEecchhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEe
Confidence 4445677899999999999999999999999874221 1 122344568899999999999999999
Q ss_pred EeCCCcEEEEeCCCCce-----eeeecCCCCCeEEEEEecC----CCEEEEEE-CCCcEEEEECCCCeeEEEecccCCce
Q 005096 204 GDDGGAIKYWQNNMNNV-----KANKSAHKESVRDLSFCRT----DLKFCSCS-DDTTVKVWDFARCQEERSLTGHGWDV 273 (715)
Q Consensus 204 gs~dg~I~iwd~~~~~~-----~~~~~~h~~~I~~l~~spd----~~~Las~s-~Dg~V~iwdl~~~~~~~~l~~~~~~I 273 (715)
|++|.+|++..++...+ ...+.-|.+.|.+++|..+ +.+|++++ .|..|++-|..++.....+.+|.+-|
T Consensus 107 gsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghi 186 (350)
T KOG0641|consen 107 GSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHI 186 (350)
T ss_pred cCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccE
Confidence 99999999987654322 2345678999999999754 35566654 47788899999999999999999998
Q ss_pred EEE-EEcCCCCEEEEEeCCCcEEEEECCCCceeEEecc-------CCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCe
Q 005096 274 KSV-DWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHG-------HKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMK 345 (715)
Q Consensus 274 ~si-~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~-------~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~ 345 (715)
.++ .|+ +-.|++|+.|.+|++||++-..++.++.. ..+.|.+++..|.|++|++|-.|....+||++.++
T Consensus 187 lalyswn--~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r 264 (350)
T KOG0641|consen 187 LALYSWN--GAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGR 264 (350)
T ss_pred EEEEEec--CcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCc
Confidence 876 454 78999999999999999999888887642 13568999999999999999999999999999999
Q ss_pred EEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCC---CceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeE
Q 005096 346 ELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHE---TPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTT 422 (715)
Q Consensus 346 ~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~---~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I 422 (715)
.+..|..|...|.++.|+| +..++++|+.|..|++-|+... +....+...|++.+..+.|++....+++.+.|.++
T Consensus 265 ~iq~f~phsadir~vrfsp-~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~ 343 (350)
T KOG0641|consen 265 MIQRFHPHSADIRCVRFSP-GAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTA 343 (350)
T ss_pred eeeeeCCCccceeEEEeCC-CceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceE
Confidence 9999999999999999999 9999999999999999998643 23344556799999999999999999999999999
Q ss_pred EEEecC
Q 005096 423 KFWCRN 428 (715)
Q Consensus 423 ~iWdl~ 428 (715)
.+|.++
T Consensus 344 tlwa~~ 349 (350)
T KOG0641|consen 344 TLWALN 349 (350)
T ss_pred EEeccC
Confidence 999874
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.4e-29 Score=245.32 Aligned_cols=293 Identities=19% Similarity=0.287 Sum_probs=253.9
Q ss_pred EEEecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005096 136 VHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQN 215 (715)
Q Consensus 136 ~~~~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~ 215 (715)
+.+.+.||++.|..++.......+.+++.|.+.+||.+++++++..+.+|.+.|++|+|++.+.++++++.|++..||..
T Consensus 140 lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~ 219 (481)
T KOG0300|consen 140 LVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKA 219 (481)
T ss_pred ehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHH
Confidence 55678999999999999988888999999999999999999999999999999999999999999999999999999961
Q ss_pred ------CC------------------------------C----ceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEE
Q 005096 216 ------NM------------------------------N----NVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVW 255 (715)
Q Consensus 216 ------~~------------------------------~----~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iw 255 (715)
.. + ..+..+.+|...|.+..|...+..+++++.|.+..+|
T Consensus 220 av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlw 299 (481)
T KOG0300|consen 220 AVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLW 299 (481)
T ss_pred hhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceee
Confidence 00 0 0123456788889999999999999999999999999
Q ss_pred ECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC-ceeEEeccCCCceEEEEEcCCCCEEEEEECCC
Q 005096 256 DFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSG-RELCSFHGHKNMVLCVKWNQNGNWVLTASKDQ 334 (715)
Q Consensus 256 dl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~-~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg 334 (715)
|+++++.+..+.+|....+.++-+|..+++++.+.|.++++||++.. ..+..|.+|...|+++.|.-|. .+++|+.|.
T Consensus 300 DVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd-~vVSgSDDr 378 (481)
T KOG0300|consen 300 DVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD-RVVSGSDDR 378 (481)
T ss_pred eeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCC-ceeecCCCc
Confidence 99999999999999999999999999999999999999999999843 4567899999999999999765 489999999
Q ss_pred eEEEEECCCCeE-EEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCce---EEEeeccCCCEEEEEEcCCC
Q 005096 335 IIKLYDIRAMKE-LESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQ---VEIHNVHDNTVWDLAWHPIG 410 (715)
Q Consensus 335 ~I~iwDl~t~~~-~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~---~~~~~~h~~~V~~l~~spdg 410 (715)
+|+|||+++.+. +.+++ .++.++.++++. +..+|+.--++..|++||++..... .....+|...|+|++|..+-
T Consensus 379 TvKvWdLrNMRsplATIR-tdS~~NRvavs~-g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eeh 456 (481)
T KOG0300|consen 379 TVKVWDLRNMRSPLATIR-TDSPANRVAVSK-GHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEH 456 (481)
T ss_pred eEEEeeeccccCcceeee-cCCccceeEeec-CCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeeccccC
Confidence 999999998765 44444 678899999997 7788888888899999999654322 22445788999999998763
Q ss_pred --CEEEEEECCCeEEEEecCCCC
Q 005096 411 --YLLCSGSNDHTTKFWCRNRPG 431 (715)
Q Consensus 411 --~~L~sgs~Dg~I~iWdl~~~~ 431 (715)
.-|++++-|..+.-|+++.+.
T Consensus 457 p~cnLftcGFDR~v~gW~in~p~ 479 (481)
T KOG0300|consen 457 PACNLFTCGFDRMVAGWKINTPT 479 (481)
T ss_pred cccccccccccceeeeeEecccC
Confidence 558899999999999998654
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-27 Score=265.46 Aligned_cols=280 Identities=16% Similarity=0.230 Sum_probs=214.6
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC----------ceE---EEEeccCCCEEEEEEcC-CCCEEEEEeCCCcEE
Q 005096 146 SINRVLWTPTGRRLITGSQSGEFTLWNGQSF----------NFE---MILQAHDHAIRSMVWSH-NDNWMVSGDDGGAIK 211 (715)
Q Consensus 146 ~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~----------~~~---~~l~~h~~~V~~l~~sp-dg~~L~tgs~dg~I~ 211 (715)
.|+....+.|+..+++++.+.....|+...+ +.. ..+.+|.+.|.+++|++ ++++|++|+.|++|+
T Consensus 22 ~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIk 101 (493)
T PTZ00421 22 NVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIM 101 (493)
T ss_pred ccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEE
Confidence 3444555556555666666665566654332 211 24778999999999999 789999999999999
Q ss_pred EEeCCCCc-------eeeeecCCCCCeEEEEEecCC-CEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCC
Q 005096 212 YWQNNMNN-------VKANKSAHKESVRDLSFCRTD-LKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKS 283 (715)
Q Consensus 212 iwd~~~~~-------~~~~~~~h~~~I~~l~~spd~-~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~ 283 (715)
|||+.+.. .+..+.+|...|.+++|++++ ++|++++.|++|+|||+++++.+..+..|...|.+++|+++++
T Consensus 102 IWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~ 181 (493)
T PTZ00421 102 GWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGS 181 (493)
T ss_pred EEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCC
Confidence 99987642 456678899999999999975 6899999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCcEEEEECCCCceeEEeccCCCc-eEEEEEcCCCCEEEEEE----CCCeEEEEECCCCeE-EEEeecCC-CC
Q 005096 284 LLVSGGKDSLVKLWDAKSGRELCSFHGHKNM-VLCVKWNQNGNWVLTAS----KDQIIKLYDIRAMKE-LESFRGHR-KD 356 (715)
Q Consensus 284 ~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~-I~sl~~spdg~~Lasgs----~dg~I~iwDl~t~~~-~~~~~~h~-~~ 356 (715)
+|++++.|+.|+|||+++++.+..+..|... +..+.|.+++..|++++ .|+.|+|||+++... +..+..+. ..
T Consensus 182 lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~ 261 (493)
T PTZ00421 182 LLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSA 261 (493)
T ss_pred EEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCc
Confidence 9999999999999999999999888888654 45678898888777654 478999999987653 33333333 34
Q ss_pred eEEEEEccCCCCEEEEEe-CCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecC
Q 005096 357 VTALAWHPFHEEYFVSGS-LDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRN 428 (715)
Q Consensus 357 V~~l~~sp~~~~~l~sgs-~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~ 428 (715)
+....|++ ++++|++++ .|+.|++||+.++.........+...+..++|.+.-. +-...--..|+|.+.
T Consensus 262 ~~~~~~d~-d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk~~--~dv~~~Ei~r~~~l~ 331 (493)
T PTZ00421 262 LFIPFFDE-DTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPKWS--LDTRKCEIARFYALT 331 (493)
T ss_pred eEEEEEcC-CCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEeccccc--ccccceeeeEEEEec
Confidence 55667787 677777776 5999999999887765554444556788888887532 222222345777764
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.8e-28 Score=271.32 Aligned_cols=264 Identities=25% Similarity=0.370 Sum_probs=235.5
Q ss_pred eeEEEEecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEE
Q 005096 133 AKFVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKY 212 (715)
Q Consensus 133 ~~~~~~~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~i 212 (715)
.+++...+.+|.+.|.++++...+++|++|+.|.+++|||+.++++..++.+|.+.|.++... ..++++|+.|.+|++
T Consensus 238 ~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkV 315 (537)
T KOG0274|consen 238 GYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTID--PFLLVSGSRDNTVKV 315 (537)
T ss_pred ceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEcc--CceEeeccCCceEEE
Confidence 345556699999999999999888899999999999999999999999999999999999874 567888999999999
Q ss_pred EeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCC
Q 005096 213 WQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDS 292 (715)
Q Consensus 213 wd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg 292 (715)
|+++++..+..+.+|.+.|+++.+. +.++++|+.|++|+|||+.++++++++.+|...|.++.+... +.+++|+.|+
T Consensus 316 W~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~ 392 (537)
T KOG0274|consen 316 WDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDT 392 (537)
T ss_pred EeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeecc
Confidence 9999999999999999999999996 789999999999999999999999999999999999988755 8999999999
Q ss_pred cEEEEECCCC-ceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeec-CCCCeEEEEEccCCCCEE
Q 005096 293 LVKLWDAKSG-RELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRG-HRKDVTALAWHPFHEEYF 370 (715)
Q Consensus 293 ~I~iwDl~s~-~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~-h~~~V~~l~~sp~~~~~l 370 (715)
+|++||+++. +++..+.+|..-+.++.+ .+++|++++.|++|++||..+++++..+.+ |...|.++++. ...+
T Consensus 393 ~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~---~~~i 467 (537)
T KOG0274|consen 393 TIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG---KEEI 467 (537)
T ss_pred ceEeecCCchhhhhhhhcCCccccccccc--ccceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC---cceE
Confidence 9999999999 999999999988876665 478999999999999999999999999998 67889988874 5788
Q ss_pred EEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEE
Q 005096 371 VSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAW 406 (715)
Q Consensus 371 ~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~ 406 (715)
++++.||.+++||+++......++.........+++
T Consensus 468 l~s~~~~~~~l~dl~~~~~~~~l~~~~~~~~~~~~~ 503 (537)
T KOG0274|consen 468 LCSSDDGSVKLWDLRSGTLIRTLLSTDLGATWGVAP 503 (537)
T ss_pred EEEecCCeeEEEecccCchhhhhhhccccccccccc
Confidence 999999999999999988766664433334444444
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.7e-28 Score=251.91 Aligned_cols=291 Identities=21% Similarity=0.346 Sum_probs=247.1
Q ss_pred EecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEE----E-------------E-eccCCCEEEEEEcCCCC
Q 005096 138 TSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEM----I-------------L-QAHDHAIRSMVWSHNDN 199 (715)
Q Consensus 138 ~~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~----~-------------l-~~h~~~V~~l~~spdg~ 199 (715)
..+..|.-+|.|+++++|++++++++.|++|.-|++.+++..+ . - +.|...|.+++.++|++
T Consensus 136 ~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgk 215 (479)
T KOG0299|consen 136 RVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGK 215 (479)
T ss_pred eeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCc
Confidence 4677899999999999999999999999999999987766331 1 1 26778899999999999
Q ss_pred EEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEc
Q 005096 200 WMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWH 279 (715)
Q Consensus 200 ~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~s 279 (715)
||++|+.|..|.||+..+.+.+..+.+|.+.|.+++|-.....|++++.|++|++|+++....+.++.+|.+.|.+|...
T Consensus 216 ylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL 295 (479)
T KOG0299|consen 216 YLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDAL 295 (479)
T ss_pred EEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeechh
Confidence 99999999999999999999999999999999999999888899999999999999999999999999999999999998
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeec-------
Q 005096 280 PTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRG------- 352 (715)
Q Consensus 280 pdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~------- 352 (715)
.-++.+.+|+.|+++++|++.. +.-..+.++.+.+-|++|-. ...+++|+.||.|.+|++.+.+.+.+...
T Consensus 296 ~reR~vtVGgrDrT~rlwKi~e-esqlifrg~~~sidcv~~In-~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~ 373 (479)
T KOG0299|consen 296 SRERCVTVGGRDRTVRLWKIPE-ESQLIFRGGEGSIDCVAFIN-DEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPE 373 (479)
T ss_pred cccceEEeccccceeEEEeccc-cceeeeeCCCCCeeeEEEec-ccceeeccCCceEEEeeecccCceeEeeccccccCC
Confidence 8888888888999999999953 33445677888999999984 46799999999999999999888776541
Q ss_pred -----CCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEee--ccCCCEEEEEEcCCCCEE-EEEECCCeEEE
Q 005096 353 -----HRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHN--VHDNTVWDLAWHPIGYLL-CSGSNDHTTKF 424 (715)
Q Consensus 353 -----h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~--~h~~~V~~l~~spdg~~L-~sgs~Dg~I~i 424 (715)
+...|++|+..+ +.+++++|+.+|.|++|.+..+...+.++. .-.+.|++|+|+.+|+.| +..+....+--
T Consensus 374 ~~~~~~~~Witsla~i~-~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~sgk~ivagiGkEhRlGR 452 (479)
T KOG0299|consen 374 LDPVNGNFWITSLAVIP-GSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSLVGFVNSLAFSNSGKRIVAGIGKEHRLGR 452 (479)
T ss_pred ccccccccceeeeEecc-cCceEEecCCCCceEEEEecCCccccceeeecccccEEEEEEEccCCCEEEEecccccccce
Confidence 123799999999 999999999999999999988854433332 146789999999999854 44555666666
Q ss_pred EecCCCC
Q 005096 425 WCRNRPG 431 (715)
Q Consensus 425 Wdl~~~~ 431 (715)
|...+..
T Consensus 453 W~~~k~~ 459 (479)
T KOG0299|consen 453 WWCLKSG 459 (479)
T ss_pred eeEeecc
Confidence 7655433
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.4e-28 Score=261.59 Aligned_cols=283 Identities=22% Similarity=0.342 Sum_probs=242.6
Q ss_pred EEEecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceE--EEEeccCCCEEE-EEEcC-CCCEEEEEeCCCcEE
Q 005096 136 VHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFE--MILQAHDHAIRS-MVWSH-NDNWMVSGDDGGAIK 211 (715)
Q Consensus 136 ~~~~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~--~~l~~h~~~V~~-l~~sp-dg~~L~tgs~dg~I~ 211 (715)
+...+.+|+..|..+++..+. .+++++.||+++||+-.....+ ..+.+|.+.|.+ ++|.+ ++..|++|+.|.+|.
T Consensus 6 ls~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~ 84 (745)
T KOG0301|consen 6 LSHELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTII 84 (745)
T ss_pred eEEEeccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEE
Confidence 345789999999999987655 7999999999999997655443 456678888777 88875 445699999999999
Q ss_pred EEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCC
Q 005096 212 YWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKD 291 (715)
Q Consensus 212 iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~D 291 (715)
+|.+...+...++++|+..|.+++...++. +++||.|.++++|.+.. +...+.+|...|++++.-+++ .+++|+.|
T Consensus 85 v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~--l~~~l~gH~asVWAv~~l~e~-~~vTgsaD 160 (745)
T KOG0301|consen 85 VFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGE--LVYSLQGHTASVWAVASLPEN-TYVTGSAD 160 (745)
T ss_pred EEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecchh--hhcccCCcchheeeeeecCCC-cEEeccCc
Confidence 999999999999999999999999887777 99999999999998754 555689999999999999887 79999999
Q ss_pred CcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEE
Q 005096 292 SLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFV 371 (715)
Q Consensus 292 g~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~ 371 (715)
.+|++|.- ++.+++|.+|.+.|+.+++-+++ .|++++.||.|++||+ +++++.++.+|..-|++++... ++..|+
T Consensus 161 KtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~-~~~~Iv 235 (745)
T KOG0301|consen 161 KTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMAL-SDGLIV 235 (745)
T ss_pred ceeeeccC--CchhhhhccchhheeeeEEecCC-CeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecC-CCCeEE
Confidence 99999975 77899999999999999998765 4888999999999999 7999999999999999999766 889999
Q ss_pred EEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCCCCC
Q 005096 372 SGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGD 432 (715)
Q Consensus 372 sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~~ 432 (715)
++++|++++||+.. .+...+......||++.+-.+|. |++|+.||.||||..++...
T Consensus 236 s~gEDrtlriW~~~---e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~k~R~ 292 (745)
T KOG0301|consen 236 STGEDRTLRIWKKD---ECVQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVDKDRK 292 (745)
T ss_pred EecCCceEEEeecC---ceEEEEecCccceEEEEEeeCCC-EEEeccCceEEEEEeccccc
Confidence 99999999999987 33344433345899999988886 67788899999999875544
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.7e-28 Score=252.31 Aligned_cols=288 Identities=20% Similarity=0.362 Sum_probs=228.9
Q ss_pred EEEecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc----eEEEEe-ccCCCEEEEEEcCCCCEEEEEeCCCcE
Q 005096 136 VHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFN----FEMILQ-AHDHAIRSMVWSHNDNWMVSGDDGGAI 210 (715)
Q Consensus 136 ~~~~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~----~~~~l~-~h~~~V~~l~~spdg~~L~tgs~dg~I 210 (715)
....+.+|+..|+++++.+.|.+|++|+.|.+|++||+.... ..+.+. .....|+++.|++.++.|++.+.....
T Consensus 159 hEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqa 238 (641)
T KOG0772|consen 159 HEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQA 238 (641)
T ss_pred ceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcce
Confidence 345688999999999999999999999999999999976532 222222 334679999999999999888888899
Q ss_pred EEEeCCCCceeee------------ecCCCCCeEEEEEecCC-CEEEEEECCCcEEEEECCCCeeEE-Eec-----ccCC
Q 005096 211 KYWQNNMNNVKAN------------KSAHKESVRDLSFCRTD-LKFCSCSDDTTVKVWDFARCQEER-SLT-----GHGW 271 (715)
Q Consensus 211 ~iwd~~~~~~~~~------------~~~h~~~I~~l~~spd~-~~Las~s~Dg~V~iwdl~~~~~~~-~l~-----~~~~ 271 (715)
+|+|.+..+.... .++|...++|.+|+|+. ..|++++.||+++|||+++.+.-. .++ +..-
T Consensus 239 kl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv 318 (641)
T KOG0772|consen 239 KLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRV 318 (641)
T ss_pred eEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCccc
Confidence 9999765544332 25788999999999976 568999999999999997654322 222 2334
Q ss_pred ceEEEEEcCCCCEEEEEeCCCcEEEEECCCCce---eEEeccCCC--ceEEEEEcCCCCEEEEEECCCeEEEEECCCCeE
Q 005096 272 DVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRE---LCSFHGHKN--MVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKE 346 (715)
Q Consensus 272 ~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~---~~~~~~~~~--~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~ 346 (715)
.+++++|++|+++|++|+.||.|.+||..+... ...-..|.. .|+||+||.||++|++-+.|+++++||++..+.
T Consensus 319 ~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kk 398 (641)
T KOG0772|consen 319 PVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKK 398 (641)
T ss_pred CceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeecccccc
Confidence 688999999999999999999999999865321 223345665 899999999999999999999999999998654
Q ss_pred -EEEeecC--CCCeEEEEEccCCCCEEEEEeC------CCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEE
Q 005096 347 -LESFRGH--RKDVTALAWHPFHEEYFVSGSL------DGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGS 417 (715)
Q Consensus 347 -~~~~~~h--~~~V~~l~~sp~~~~~l~sgs~------DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs 417 (715)
+....+. ...-+.++|+| +.++|++|+. .|.+.+||..+-..+.++.. ....|..+.|++.-+.|++++
T Consensus 399 pL~~~tgL~t~~~~tdc~FSP-d~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i-~~aSvv~~~WhpkLNQi~~gs 476 (641)
T KOG0772|consen 399 PLNVRTGLPTPFPGTDCCFSP-DDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDI-STASVVRCLWHPKLNQIFAGS 476 (641)
T ss_pred chhhhcCCCccCCCCccccCC-CceEEEecccccCCCCCceEEEEeccceeeEEEecC-CCceEEEEeecchhhheeeec
Confidence 4444432 33567899999 8899998864 57899999887777666654 467889999999988888899
Q ss_pred CCCeEEEE
Q 005096 418 NDHTTKFW 425 (715)
Q Consensus 418 ~Dg~I~iW 425 (715)
.||+++||
T Consensus 477 gdG~~~vy 484 (641)
T KOG0772|consen 477 GDGTAHVY 484 (641)
T ss_pred CCCceEEE
Confidence 99999986
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.5e-28 Score=243.59 Aligned_cols=244 Identities=25% Similarity=0.426 Sum_probs=211.0
Q ss_pred EecCCCCccEEEEEEcCCCC---EEEEEeCCCeEEEEeCCCCce----EEEEeccCCCEEEEEEcCCCCEEEEEeCCCcE
Q 005096 138 TSLNKNRCSINRVLWTPTGR---RLITGSQSGEFTLWNGQSFNF----EMILQAHDHAIRSMVWSHNDNWMVSGDDGGAI 210 (715)
Q Consensus 138 ~~l~~H~~~I~~l~~spdg~---~Latgs~dg~I~Iwd~~~~~~----~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I 210 (715)
..+.+|.+.|.+++|..... .|++++.|.++++|..+.++. ++...+|+..|.+|....++..+++|+.|..|
T Consensus 138 ~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~l 217 (423)
T KOG0313|consen 138 KTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTML 217 (423)
T ss_pred EEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeeccccee
Confidence 35779999999998865443 599999999999998776543 44456999999999999999999999999999
Q ss_pred EEEeCCC-------------------------CceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEE
Q 005096 211 KYWQNNM-------------------------NNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERS 265 (715)
Q Consensus 211 ~iwd~~~-------------------------~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~ 265 (715)
.||+.++ ...+..+.+|...|.++.|+. ...+++++.|.+|+.||++++..+..
T Consensus 218 kiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~ 296 (423)
T KOG0313|consen 218 KIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKST 296 (423)
T ss_pred eecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccceee
Confidence 9998321 112445678999999999997 77899999999999999999998888
Q ss_pred ecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCc---eeEEeccCCCceEEEEEcCC-CCEEEEEECCCeEEEEEC
Q 005096 266 LTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGR---ELCSFHGHKNMVLCVKWNQN-GNWVLTASKDQIIKLYDI 341 (715)
Q Consensus 266 l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~---~~~~~~~~~~~I~sl~~spd-g~~Lasgs~dg~I~iwDl 341 (715)
+. ....+.|+++++..++|++|+.|..|++||-+++. ....+.+|.++|.++.|+|. ...|++++.|+++++||+
T Consensus 297 ~~-~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDv 375 (423)
T KOG0313|consen 297 LT-TNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDV 375 (423)
T ss_pred ee-cCcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEe
Confidence 87 45578999999999999999999999999998753 34567899999999999994 566889999999999999
Q ss_pred CCCe-EEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcC
Q 005096 342 RAMK-ELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVG 385 (715)
Q Consensus 342 ~t~~-~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~ 385 (715)
|+.+ .+..+.+|...|.++.|+ ++.+|++|+.|.+|+|+...
T Consensus 376 RS~k~plydI~~h~DKvl~vdW~--~~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 376 RSTKAPLYDIAGHNDKVLSVDWN--EGGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred ccCCCcceeeccCCceEEEEecc--CCceEEeccCcceEEEeccc
Confidence 9888 899999999999999998 57899999999999998653
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.6e-29 Score=238.53 Aligned_cols=246 Identities=22% Similarity=0.370 Sum_probs=224.1
Q ss_pred EecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 005096 138 TSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNM 217 (715)
Q Consensus 138 ~~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~ 217 (715)
-++.+|++.|.+..++.+..+.|+++.|-+-+|||.-++..+..+. |..-|.+++|+.|.++|++|+.+..++|||++.
T Consensus 53 gtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdln~ 131 (334)
T KOG0278|consen 53 GTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNR 131 (334)
T ss_pred EeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhccC
Confidence 4688999999999999999999999999999999999998888875 788999999999999999999999999999987
Q ss_pred Cc-eeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEE
Q 005096 218 NN-VKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKL 296 (715)
Q Consensus 218 ~~-~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~i 296 (715)
.+ ....+.+|...|..+.|+..++.|+++++|++||+||.++++.+.++. ....|+++.++.||++|.++ ..+.|++
T Consensus 132 p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTia-~gssV~F 209 (334)
T KOG0278|consen 132 PKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTIA-YGSSVKF 209 (334)
T ss_pred CCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEe-cCCCCcceeeccCCCEEEEe-cCceeEE
Confidence 53 456678999999999999999999999999999999999999999987 66789999999999977665 4578999
Q ss_pred EECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEe-ecCCCCeEEEEEccCCCCEEEEEeC
Q 005096 297 WDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESF-RGHRKDVTALAWHPFHEEYFVSGSL 375 (715)
Q Consensus 297 wDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~-~~h~~~V~~l~~sp~~~~~l~sgs~ 375 (715)
||.++-..++.++ -...|.+.+++|+...+++|++|..++.||..+++.+..+ ++|-+.|.|+.|+| ++.+.++|+.
T Consensus 210 wdaksf~~lKs~k-~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSP-dGE~yAsGSE 287 (334)
T KOG0278|consen 210 WDAKSFGLLKSYK-MPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSP-DGELYASGSE 287 (334)
T ss_pred eccccccceeecc-CccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECC-CCceeeccCC
Confidence 9999988888877 4567999999999999999999999999999999999996 89999999999999 8999999999
Q ss_pred CCcEEEEEcCCCC
Q 005096 376 DGSIFHWLVGHET 388 (715)
Q Consensus 376 DG~I~iwd~~~~~ 388 (715)
||+|+||.....+
T Consensus 288 DGTirlWQt~~~~ 300 (334)
T KOG0278|consen 288 DGTIRLWQTTPGK 300 (334)
T ss_pred CceEEEEEecCCC
Confidence 9999999875543
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-28 Score=263.06 Aligned_cols=278 Identities=23% Similarity=0.403 Sum_probs=242.2
Q ss_pred EEEEc-CCCCEEEEEeCCCeEEEEeCCCCc------eEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC--c
Q 005096 149 RVLWT-PTGRRLITGSQSGEFTLWNGQSFN------FEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN--N 219 (715)
Q Consensus 149 ~l~~s-pdg~~Latgs~dg~I~Iwd~~~~~------~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~--~ 219 (715)
++..+ +.+++|++|+.||.|++|+..... ....++.|...|+.++...+++.|++++.|-+|++|+.... -
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~ 108 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTF 108 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcch
Confidence 33444 356789999999999999976432 36678889999999999999999999999999999998877 5
Q ss_pred eeeeecCCCCCeEEEEE-ecCCCEEEEEECCCcEEEEECCCCee--EE--------Eec-ccCCceEEEEEcCCCCEEEE
Q 005096 220 VKANKSAHKESVRDLSF-CRTDLKFCSCSDDTTVKVWDFARCQE--ER--------SLT-GHGWDVKSVDWHPTKSLLVS 287 (715)
Q Consensus 220 ~~~~~~~h~~~I~~l~~-spd~~~Las~s~Dg~V~iwdl~~~~~--~~--------~l~-~~~~~I~si~~spdg~~L~s 287 (715)
+..++..|++.|.||++ ..+...+|+|+.|+.|++||++++.. +. .+. ++...|.+++.++.+..|++
T Consensus 109 c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivs 188 (735)
T KOG0308|consen 109 CMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVS 188 (735)
T ss_pred hHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEe
Confidence 67788899999999999 77888999999999999999987632 22 222 67788999999999999999
Q ss_pred EeCCCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCC
Q 005096 288 GGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHE 367 (715)
Q Consensus 288 gs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~ 367 (715)
|+.++.|++||.++++.+..+.+|...|.++..+.||+.+++++.||+|++||+...+++.++..|+..|.++..++ +-
T Consensus 189 Ggtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~-sf 267 (735)
T KOG0308|consen 189 GGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSP-SF 267 (735)
T ss_pred cCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCC-Cc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998 88
Q ss_pred CEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecC
Q 005096 368 EYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRN 428 (715)
Q Consensus 368 ~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~ 428 (715)
..+++|+.||.|..-|+++......+.. .+.+|..+..+.+..-+-+++.|+.|+-|...
T Consensus 268 ~~vYsG~rd~~i~~Tdl~n~~~~tlick-~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~ 327 (735)
T KOG0308|consen 268 THVYSGGRDGNIYRTDLRNPAKSTLICK-EDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLE 327 (735)
T ss_pred ceEEecCCCCcEEecccCCchhheEeec-CCCchhhhhhccccCCceeeeccccceecCCc
Confidence 9999999999999999988655444443 45678888887666666888889999999764
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-26 Score=259.45 Aligned_cols=248 Identities=16% Similarity=0.226 Sum_probs=198.2
Q ss_pred EeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCC-CCEEEEEeCCCcEEEEeCCCCc--------eeeeecCCCCCeE
Q 005096 162 GSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHN-DNWMVSGDDGGAIKYWQNNMNN--------VKANKSAHKESVR 232 (715)
Q Consensus 162 gs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spd-g~~L~tgs~dg~I~iwd~~~~~--------~~~~~~~h~~~I~ 232 (715)
|+.++.|+||+..+...+..+.+|.+.|.+++|+++ +++|++|+.|++|+|||+.++. ....+.+|...|.
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~ 129 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence 566889999998888888899999999999999997 7899999999999999987642 2345678999999
Q ss_pred EEEEecCCCE-EEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccC
Q 005096 233 DLSFCRTDLK-FCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGH 311 (715)
Q Consensus 233 ~l~~spd~~~-Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~ 311 (715)
+++|++++.. |++++.|++|+|||+++++.+..+. +...|.+++|+++|++|++++.|+.|+|||+++++.+..+.+|
T Consensus 130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH 208 (568)
T PTZ00420 130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIH 208 (568)
T ss_pred EEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecc
Confidence 9999998875 5789999999999999988777775 5678999999999999999999999999999999999999888
Q ss_pred CCceEE-----EEEcCCCCEEEEEECCC----eEEEEECCC-CeEEEEeecCCC-CeEEEEEccCCCCEEEEEeCCCcEE
Q 005096 312 KNMVLC-----VKWNQNGNWVLTASKDQ----IIKLYDIRA-MKELESFRGHRK-DVTALAWHPFHEEYFVSGSLDGSIF 380 (715)
Q Consensus 312 ~~~I~s-----l~~spdg~~Lasgs~dg----~I~iwDl~t-~~~~~~~~~h~~-~V~~l~~sp~~~~~l~sgs~DG~I~ 380 (715)
.+.+.+ ..|++++++|++++.|+ .|+|||+++ .+.+..+..+.. .+....|.++++.++++|+.|+.|+
T Consensus 209 ~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr 288 (568)
T PTZ00420 209 DGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCR 288 (568)
T ss_pred cCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEE
Confidence 875433 33557889999888664 799999995 455554432221 2222344455788999999999999
Q ss_pred EEEcCCCCceEEEeeccCCCEEEEEEcCCC
Q 005096 381 HWLVGHETPQVEIHNVHDNTVWDLAWHPIG 410 (715)
Q Consensus 381 iwd~~~~~~~~~~~~~h~~~V~~l~~spdg 410 (715)
+|++..+.........+...+.+++|.|+.
T Consensus 289 ~~e~~~~~~~~l~~~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 289 YYQHSLGSIRKVNEYKSCSPFRSFGFLPKQ 318 (568)
T ss_pred EEEccCCcEEeecccccCCCccceEEcccc
Confidence 999976632211122245678899999874
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.7e-27 Score=233.18 Aligned_cols=244 Identities=22% Similarity=0.358 Sum_probs=214.7
Q ss_pred ecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCC--EEEEEeCCCcEEEEeCC
Q 005096 139 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDN--WMVSGDDGGAIKYWQNN 216 (715)
Q Consensus 139 ~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~--~L~tgs~dg~I~iwd~~ 216 (715)
.+..|.+.|+++++ ++.++|+|+.|-+|+|||+.+.+.+..+..|.+.|+++.|.++-. .|++|+.||.|.+|+..
T Consensus 38 ~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~ 115 (362)
T KOG0294|consen 38 AFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVG 115 (362)
T ss_pred cccccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcC
Confidence 56789999999999 588999999999999999999999999999999999999998764 89999999999999999
Q ss_pred CCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEE
Q 005096 217 MNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKL 296 (715)
Q Consensus 217 ~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~i 296 (715)
..+++..++.|...|+.|+++|.+++.++.+.|+.++.||+-+++....+. .....+.|.|++.|.+++.+..+ .|-|
T Consensus 116 ~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~-L~~~at~v~w~~~Gd~F~v~~~~-~i~i 193 (362)
T KOG0294|consen 116 SWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLN-LKNKATLVSWSPQGDHFVVSGRN-KIDI 193 (362)
T ss_pred CeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeec-cCCcceeeEEcCCCCEEEEEecc-EEEE
Confidence 999999999999999999999999999999999999999998887665554 23344569999999999988875 5999
Q ss_pred EECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEcc-CCCCEEEEEeC
Q 005096 297 WDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHP-FHEEYFVSGSL 375 (715)
Q Consensus 297 wDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp-~~~~~l~sgs~ 375 (715)
|.+.+.+....+. ....+.|+.|. ++.+|++|..|+.|++||..+..++..+.+|...|-++.+-. ....+|++++.
T Consensus 194 ~q~d~A~v~~~i~-~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSS 271 (362)
T KOG0294|consen 194 YQLDNASVFREIE-NPKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASS 271 (362)
T ss_pred EecccHhHhhhhh-ccccceeeeec-CCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEecc
Confidence 9998877666555 34668888887 677899999999999999999999999999999999998533 25679999999
Q ss_pred CCcEEEEEcCCCC
Q 005096 376 DGSIFHWLVGHET 388 (715)
Q Consensus 376 DG~I~iwd~~~~~ 388 (715)
||.|+|||++...
T Consensus 272 DG~I~vWd~~~~~ 284 (362)
T KOG0294|consen 272 DGFIKVWDIDMET 284 (362)
T ss_pred CceEEEEEccccc
Confidence 9999999998763
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.9e-27 Score=232.69 Aligned_cols=270 Identities=20% Similarity=0.271 Sum_probs=221.7
Q ss_pred CCCccEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCC-c-eEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 005096 142 KNRCSINRVLWTP-TGRRLITGSQSGEFTLWNGQSF-N-FEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN 218 (715)
Q Consensus 142 ~H~~~I~~l~~sp-dg~~Latgs~dg~I~Iwd~~~~-~-~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~ 218 (715)
.-.+.|.+|+||| ...+|++++.||+||+|+++.. . .-+....|++.|.+++|+.||..+++|+.|+.+++||+.++
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~ 104 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG 104 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC
Confidence 3567899999999 5566779999999999998873 2 23455678999999999999999999999999999999999
Q ss_pred ceeeeecCCCCCeEEEEEecCCC--EEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEE
Q 005096 219 NVKANKSAHKESVRDLSFCRTDL--KFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKL 296 (715)
Q Consensus 219 ~~~~~~~~h~~~I~~l~~spd~~--~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~i 296 (715)
.. ..+..|...|.++.|-+... .|++|+.|++|+.||++....+.++. ..+.+.+++.- ..+++++..+..|.+
T Consensus 105 Q~-~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa~Dv~--~pm~vVata~r~i~v 180 (347)
T KOG0647|consen 105 QV-SQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYAADVL--YPMAVVATAERHIAV 180 (347)
T ss_pred Ce-eeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee-ccceeeehhcc--CceeEEEecCCcEEE
Confidence 54 45578999999999988665 79999999999999999988888876 44566666654 568889999999999
Q ss_pred EECCCCceeEE-e-ccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCC--eEEEEeecCCC---------CeEEEEEc
Q 005096 297 WDAKSGRELCS-F-HGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAM--KELESFRGHRK---------DVTALAWH 363 (715)
Q Consensus 297 wDl~s~~~~~~-~-~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~--~~~~~~~~h~~---------~V~~l~~s 363 (715)
|+|+++..... . ...+-.++||+...|.+..+.|+.+|.+.|..+... +.-.+|++|.. .|++|+|+
T Consensus 181 ynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~Fh 260 (347)
T KOG0647|consen 181 YNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFH 260 (347)
T ss_pred EEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEee
Confidence 99986543322 1 223456899999998888899999999999999876 55566777763 47889999
Q ss_pred cCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEE
Q 005096 364 PFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGS 417 (715)
Q Consensus 364 p~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs 417 (715)
| .-..|+|++.||++.+||-+...++.... .|...|++++|+.+|.+++.+.
T Consensus 261 P-~hgtlvTaGsDGtf~FWDkdar~kLk~s~-~~~qpItcc~fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 261 P-VHGTLVTAGSDGTFSFWDKDARTKLKTSE-THPQPITCCSFNRNGSIFAYAL 312 (347)
T ss_pred c-ccceEEEecCCceEEEecchhhhhhhccC-cCCCccceeEecCCCCEEEEEe
Confidence 9 77889999999999999987766654443 5888999999999999887664
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.9e-28 Score=233.57 Aligned_cols=242 Identities=23% Similarity=0.411 Sum_probs=213.0
Q ss_pred CCccEEEEEEcCC-CCEEEEEeCCCeEEEEeCCC-CceEEEEeccCCCEEEEEEcCC-CCEEEEEeCCCcEEEEeCCCCc
Q 005096 143 NRCSINRVLWTPT-GRRLITGSQSGEFTLWNGQS-FNFEMILQAHDHAIRSMVWSHN-DNWMVSGDDGGAIKYWQNNMNN 219 (715)
Q Consensus 143 H~~~I~~l~~spd-g~~Latgs~dg~I~Iwd~~~-~~~~~~l~~h~~~V~~l~~spd-g~~L~tgs~dg~I~iwd~~~~~ 219 (715)
-.+.+..++|+++ .+.+++++.||+++|||+.. .+.+..++.|+..|.++.|+.. +..+++++.|++|++|+.+..+
T Consensus 59 ~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~ 138 (311)
T KOG0277|consen 59 TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPN 138 (311)
T ss_pred cccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCc
Confidence 4567899999986 46788999999999999543 4578889999999999999975 4566888999999999999999
Q ss_pred eeeeecCCCCCeEEEEEec-CCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcC-CCCEEEEEeCCCcEEEE
Q 005096 220 VKANKSAHKESVRDLSFCR-TDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHP-TKSLLVSGGKDSLVKLW 297 (715)
Q Consensus 220 ~~~~~~~h~~~I~~l~~sp-d~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~sp-dg~~L~sgs~Dg~I~iw 297 (715)
.+.++.+|...|...+|+| ..+.+++++.|+++++||++.......+..|...|.|+.|+. +.+.|+||+.|+.|++|
T Consensus 139 Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~w 218 (311)
T KOG0277|consen 139 SVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGW 218 (311)
T ss_pred ceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEE
Confidence 9999999999999999998 568899999999999999977666666888999999999997 45689999999999999
Q ss_pred ECCCC-ceeEEeccCCCceEEEEEcCC-CCEEEEEECCCeEEEEECCC-CeEEEEeecCCCCeEEEEEccCCCCEEEEEe
Q 005096 298 DAKSG-RELCSFHGHKNMVLCVKWNQN-GNWVLTASKDQIIKLYDIRA-MKELESFRGHRKDVTALAWHPFHEEYFVSGS 374 (715)
Q Consensus 298 Dl~s~-~~~~~~~~~~~~I~sl~~spd-g~~Lasgs~dg~I~iwDl~t-~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs 374 (715)
|+++- ..+.++.+|.-.|+.|+|||. ..+|++++.|-+++|||... ...+.+...|..-|..+.|+.....++|+++
T Consensus 219 Dir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~g 298 (311)
T KOG0277|consen 219 DIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTG 298 (311)
T ss_pred ehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecc
Confidence 99974 467888999999999999994 57899999999999999984 4456777789999999999999999999999
Q ss_pred CCCcEEEEEc
Q 005096 375 LDGSIFHWLV 384 (715)
Q Consensus 375 ~DG~I~iwd~ 384 (715)
.|+.++||+-
T Consensus 299 WDe~l~Vw~p 308 (311)
T KOG0277|consen 299 WDELLYVWNP 308 (311)
T ss_pred cccceeeecc
Confidence 9999999983
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-26 Score=258.38 Aligned_cols=242 Identities=18% Similarity=0.310 Sum_probs=191.3
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEeCCCC----------cee---eeecCCCCCeEEEEEec-CCCEEEEEECCCcEEE
Q 005096 189 IRSMVWSHNDNWMVSGDDGGAIKYWQNNMN----------NVK---ANKSAHKESVRDLSFCR-TDLKFCSCSDDTTVKV 254 (715)
Q Consensus 189 V~~l~~spdg~~L~tgs~dg~I~iwd~~~~----------~~~---~~~~~h~~~I~~l~~sp-d~~~Las~s~Dg~V~i 254 (715)
|+....+.|+..+++++.+.....|+...+ +.. ..+.+|.+.|.+++|++ ++++|++++.|++|+|
T Consensus 23 i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkI 102 (493)
T PTZ00421 23 VTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMG 102 (493)
T ss_pred cccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEE
Confidence 333444445444555555555555553322 211 23568999999999999 8889999999999999
Q ss_pred EECCCC-------eeEEEecccCCceEEEEEcCCC-CEEEEEeCCCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCE
Q 005096 255 WDFARC-------QEERSLTGHGWDVKSVDWHPTK-SLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNW 326 (715)
Q Consensus 255 wdl~~~-------~~~~~l~~~~~~I~si~~spdg-~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~ 326 (715)
||+.+. +.+..+.+|...|.+|+|+|++ ++|++++.|++|+|||+++++.+..+..|...|.+++|++++++
T Consensus 103 Wdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~l 182 (493)
T PTZ00421 103 WGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSL 182 (493)
T ss_pred EecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCE
Confidence 999764 2466788999999999999985 69999999999999999999999999999999999999999999
Q ss_pred EEEEECCCeEEEEECCCCeEEEEeecCCCC-eEEEEEccCCCCEEEEEe----CCCcEEEEEcCCCCceEEEeec-cCCC
Q 005096 327 VLTASKDQIIKLYDIRAMKELESFRGHRKD-VTALAWHPFHEEYFVSGS----LDGSIFHWLVGHETPQVEIHNV-HDNT 400 (715)
Q Consensus 327 Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~-V~~l~~sp~~~~~l~sgs----~DG~I~iwd~~~~~~~~~~~~~-h~~~ 400 (715)
|++++.|+.|+|||+++++.+..+..|... +..+.|.+ ++..|++++ .|+.|++||+++.......... ....
T Consensus 183 Latgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~-~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~ 261 (493)
T PTZ00421 183 LCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAK-RKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSA 261 (493)
T ss_pred EEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcC-CCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCc
Confidence 999999999999999999999999888765 45678888 445555443 4789999999876655544432 3345
Q ss_pred EEEEEEcCCCCEEEEEE-CCCeEEEEecCCCC
Q 005096 401 VWDLAWHPIGYLLCSGS-NDHTTKFWCRNRPG 431 (715)
Q Consensus 401 V~~l~~spdg~~L~sgs-~Dg~I~iWdl~~~~ 431 (715)
+....|++++.+|++++ .|+.|++||+....
T Consensus 262 ~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~ 293 (493)
T PTZ00421 262 LFIPFFDEDTNLLYIGSKGEGNIRCFELMNER 293 (493)
T ss_pred eEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCc
Confidence 66778999999999887 59999999997543
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.6e-28 Score=240.96 Aligned_cols=249 Identities=19% Similarity=0.294 Sum_probs=219.2
Q ss_pred cCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeee--------cCCCCCeEEEEEecCCCEEEEEECCCcEEEEE
Q 005096 185 HDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANK--------SAHKESVRDLSFCRTDLKFCSCSDDTTVKVWD 256 (715)
Q Consensus 185 h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~--------~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwd 256 (715)
....+.|..|+||+++|++|+.||.|.|||..++++...+ .-+.+.|.|++|+.|...|++|+.||.|+||.
T Consensus 212 ~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWr 291 (508)
T KOG0275|consen 212 QKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWR 291 (508)
T ss_pred cccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEE
Confidence 4566889999999999999999999999999988765544 34678999999999999999999999999999
Q ss_pred CCCCeeEEEec-ccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCe
Q 005096 257 FARCQEERSLT-GHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQI 335 (715)
Q Consensus 257 l~~~~~~~~l~-~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~ 335 (715)
++++.+++.|. .|...|+|+.|+.|+..+++++.|.+++|.-+++|++++.+++|.+.|+...|..||.+|++++.||+
T Consensus 292 i~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgt 371 (508)
T KOG0275|consen 292 IETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGT 371 (508)
T ss_pred EecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCcc
Confidence 99999999987 89999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCCCeEEEEeec--CCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeec--cCCCEEEEEEcCCCC
Q 005096 336 IKLYDIRAMKELESFRG--HRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNV--HDNTVWDLAWHPIGY 411 (715)
Q Consensus 336 I~iwDl~t~~~~~~~~~--h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~--h~~~V~~l~~spdg~ 411 (715)
|+||+.++.+++.+|+. .+..|+++...|.+...+++|...++|+|.++... .+..+..+ ..+...+++.++.|.
T Consensus 372 vkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQ-vVrsfsSGkREgGdFi~~~lSpkGe 450 (508)
T KOG0275|consen 372 VKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQ-VVRSFSSGKREGGDFINAILSPKGE 450 (508)
T ss_pred EEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccce-EEeeeccCCccCCceEEEEecCCCc
Confidence 99999999999999884 55678999999988899999999999999887432 22222222 234566778899999
Q ss_pred EEEEEECCCeEEEEecCCCCCcc
Q 005096 412 LLCSGSNDHTTKFWCRNRPGDTA 434 (715)
Q Consensus 412 ~L~sgs~Dg~I~iWdl~~~~~~~ 434 (715)
++++.++|+.++.|.+...+.+.
T Consensus 451 wiYcigED~vlYCF~~~sG~LE~ 473 (508)
T KOG0275|consen 451 WIYCIGEDGVLYCFSVLSGKLER 473 (508)
T ss_pred EEEEEccCcEEEEEEeecCceee
Confidence 99999999999999986655443
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.7e-27 Score=231.64 Aligned_cols=294 Identities=16% Similarity=0.269 Sum_probs=230.2
Q ss_pred CceeeeEEEEecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceE--EEE--eccCCCEEEEEEcCCCCEEE-E
Q 005096 129 TSFAAKFVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFE--MIL--QAHDHAIRSMVWSHNDNWMV-S 203 (715)
Q Consensus 129 ~~~~~~~~~~~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~--~~l--~~h~~~V~~l~~spdg~~L~-t 203 (715)
..|...+....|++|.+.|++++|+.||++|++++.|++|+||++++.... +.+ ...-+.-+.++|++|.+-++ .
T Consensus 71 ~~f~Hpl~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~ 150 (420)
T KOG2096|consen 71 PTFVHPLNVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVS 150 (420)
T ss_pred CCcccchhhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEE
Confidence 345556666789999999999999999999999999999999998874321 111 11123567899999987654 4
Q ss_pred EeCCCcEEEEeCCCCc---ee---------eeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCC
Q 005096 204 GDDGGAIKYWQNNMNN---VK---------ANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGW 271 (715)
Q Consensus 204 gs~dg~I~iwd~~~~~---~~---------~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~ 271 (715)
+-...++++|.+...+ .. ..-+.|.-.|..+-+..++.+|++++.|.+|.+||+. ++.+..+.....
T Consensus 151 ~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~ 229 (420)
T KOG2096|consen 151 VKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQS 229 (420)
T ss_pred EccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeeccccc
Confidence 5566789999754321 11 1113455667778888888999999999999999998 788888887777
Q ss_pred ceEEEEEcCCCCEEEEEeCCCcEEEEECC---CC-----ceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCC
Q 005096 272 DVKSVDWHPTKSLLVSGGKDSLVKLWDAK---SG-----RELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRA 343 (715)
Q Consensus 272 ~I~si~~spdg~~L~sgs~Dg~I~iwDl~---s~-----~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t 343 (715)
.-...+++|+|++|++++..-.|++|.+- .| +.+..+++|...|..++|+++.+.+++.+.||+++|||++-
T Consensus 230 ~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdV 309 (420)
T KOG2096|consen 230 SNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDV 309 (420)
T ss_pred cccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccc
Confidence 78889999999999999999999999863 22 34567889999999999999999999999999999999853
Q ss_pred C-------eEEEEe----ecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCE
Q 005096 344 M-------KELESF----RGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYL 412 (715)
Q Consensus 344 ~-------~~~~~~----~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 412 (715)
. +.+++. ....+.-..+..+| ++..|+... ...|.+|..++++..-.+...|...|.+|+|+++|++
T Consensus 310 rY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP-~g~~lA~s~-gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~ 387 (420)
T KOG2096|consen 310 RYEAGQDPKILKEGSAPLHAAGSEPVRLELSP-SGDSLAVSF-GSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKY 387 (420)
T ss_pred eEecCCCchHhhcCCcchhhcCCCceEEEeCC-CCcEEEeec-CCceEEEEcccCccchhHHHhhcCceeeEEecCCCcE
Confidence 2 122222 12334455899999 777777654 4479999998888877888889999999999999999
Q ss_pred EEEEECCCeEEEEe
Q 005096 413 LCSGSNDHTTKFWC 426 (715)
Q Consensus 413 L~sgs~Dg~I~iWd 426 (715)
+++++ |..++++.
T Consensus 388 ~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 388 IATCG-DRYVRVIR 400 (420)
T ss_pred Eeeec-ceeeeeec
Confidence 99988 67888875
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.8e-27 Score=230.19 Aligned_cols=268 Identities=20% Similarity=0.297 Sum_probs=224.4
Q ss_pred EEEEEeCCCeEEEEeCCCC------------ceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeec
Q 005096 158 RLITGSQSGEFTLWNGQSF------------NFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKS 225 (715)
Q Consensus 158 ~Latgs~dg~I~Iwd~~~~------------~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~ 225 (715)
.|++|++...|.-+++.-. ..+..+..|.+.|++++.+ +.++++|+.|-+|+|||+........+.
T Consensus 3 ~iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll 80 (362)
T KOG0294|consen 3 EIIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILL 80 (362)
T ss_pred eEEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhccee
Confidence 4677887777766654321 1245567899999999985 8999999999999999999999888999
Q ss_pred CCCCCeEEEEEecCCC--EEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 005096 226 AHKESVRDLSFCRTDL--KFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGR 303 (715)
Q Consensus 226 ~h~~~I~~l~~spd~~--~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~ 303 (715)
.|.+.|+++.|.++-. .|++|++||.|.+|+.....++..++.|...|+.|+++|.+++-++.+.|+.+++||+-+|+
T Consensus 81 ~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr 160 (362)
T KOG0294|consen 81 SHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGR 160 (362)
T ss_pred ccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCc
Confidence 9999999999998765 89999999999999999999999999999999999999999999999999999999999888
Q ss_pred eeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEE
Q 005096 304 ELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWL 383 (715)
Q Consensus 304 ~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd 383 (715)
.-..+. -....+.|.|++.|.+++++..+ .|-||.+.+.+....+.. ...+.++.|. ++..|++|.+|+.|.+||
T Consensus 161 ~a~v~~-L~~~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~-~~r~l~~~~l--~~~~L~vG~d~~~i~~~D 235 (362)
T KOG0294|consen 161 VAFVLN-LKNKATLVSWSPQGDHFVVSGRN-KIDIYQLDNASVFREIEN-PKRILCATFL--DGSELLVGGDNEWISLKD 235 (362)
T ss_pred cceeec-cCCcceeeEEcCCCCEEEEEecc-EEEEEecccHhHhhhhhc-cccceeeeec--CCceEEEecCCceEEEec
Confidence 766554 23334559999999999888755 689999987776655553 3567777776 788999999999999999
Q ss_pred cCCCCceEEEeeccCCCEEEEEE--cCCCCEEEEEECCCeEEEEecCCCCCc
Q 005096 384 VGHETPQVEIHNVHDNTVWDLAW--HPIGYLLCSGSNDHTTKFWCRNRPGDT 433 (715)
Q Consensus 384 ~~~~~~~~~~~~~h~~~V~~l~~--spdg~~L~sgs~Dg~I~iWdl~~~~~~ 433 (715)
.+..... ..+.+|...|.++.+ .+++.+|+|++.||.|+|||++...+.
T Consensus 236 ~ds~~~~-~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~k~ 286 (362)
T KOG0294|consen 236 TDSDTPL-TEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMETKK 286 (362)
T ss_pred cCCCccc-eeeecchhheeeeEEEecCCceEEEEeccCceEEEEEccccccC
Confidence 9885444 555579999999985 345789999999999999999766443
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-27 Score=248.48 Aligned_cols=243 Identities=27% Similarity=0.413 Sum_probs=215.2
Q ss_pred EecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCC-CEEEEEeCCCcEEEEeCC
Q 005096 138 TSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHND-NWMVSGDDGGAIKYWQNN 216 (715)
Q Consensus 138 ~~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg-~~L~tgs~dg~I~iwd~~ 216 (715)
+.+...++.|.+++|-.||++|++|+..|.|+|||.++...++.+.+|...|..+.|++.+ ..|++|++|+.+++||+.
T Consensus 62 k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s 141 (487)
T KOG0310|consen 62 KTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLS 141 (487)
T ss_pred hhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcC
Confidence 3455678899999999999999999999999999988877889999999999999999976 466788999999999999
Q ss_pred CCceeeeecCCCCCeEEEEEecCC-CEEEEEECCCcEEEEECCCC-eeEEEecccCCceEEEEEcCCCCEEEEEeCCCcE
Q 005096 217 MNNVKANKSAHKESVRDLSFCRTD-LKFCSCSDDTTVKVWDFARC-QEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLV 294 (715)
Q Consensus 217 ~~~~~~~~~~h~~~I~~l~~spd~-~~Las~s~Dg~V~iwdl~~~-~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I 294 (715)
+..+...+.+|++.|.|.+|++-. ..+++|+.||+|++||++.. ..+.++. |+..|.++.+-+.|.+|++++. ..|
T Consensus 142 ~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-hg~pVe~vl~lpsgs~iasAgG-n~v 219 (487)
T KOG0310|consen 142 TAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-HGCPVESVLALPSGSLIASAGG-NSV 219 (487)
T ss_pred CcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec-CCCceeeEEEcCCCCEEEEcCC-CeE
Confidence 998877899999999999999854 57899999999999999877 5555555 8999999999999999998875 679
Q ss_pred EEEECCCC-ceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEE
Q 005096 295 KLWDAKSG-RELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSG 373 (715)
Q Consensus 295 ~iwDl~s~-~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sg 373 (715)
++||+.+| +.+..+..|...|+|+++..++..|++++-|+.|++||+.+.+.+..++ ..+.|.++++++ ++..++.|
T Consensus 220 kVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~-~~~pvLsiavs~-dd~t~viG 297 (487)
T KOG0310|consen 220 KVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWK-YPGPVLSIAVSP-DDQTVVIG 297 (487)
T ss_pred EEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeee-cccceeeEEecC-CCceEEEe
Confidence 99999965 4455555699999999999999999999999999999999999988887 778999999999 88899999
Q ss_pred eCCCcEEEEEc
Q 005096 374 SLDGSIFHWLV 384 (715)
Q Consensus 374 s~DG~I~iwd~ 384 (715)
..||.+.+-+.
T Consensus 298 msnGlv~~rr~ 308 (487)
T KOG0310|consen 298 MSNGLVSIRRR 308 (487)
T ss_pred cccceeeeehh
Confidence 99999887744
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2e-27 Score=254.86 Aligned_cols=331 Identities=19% Similarity=0.238 Sum_probs=252.1
Q ss_pred cceEeeehhhheeeEEEEEeccCCCccccccCchhhhcCccceeecCCCCCceeeeEEEEecCCCCccEEEEEEcCCCCE
Q 005096 79 RRAVDYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSFAAKFVHTSLNKNRCSINRVLWTPTGRR 158 (715)
Q Consensus 79 ~~~~~~~~~~~~~~~irvW~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~~l~~spdg~~ 158 (715)
+...+.++.+.++..|.+||+..-++.-......++...++.++... .+-|+..--|+ |.+ .
T Consensus 333 det~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p--------------~nv~~~~~acl---p~~-c 394 (1080)
T KOG1408|consen 333 DETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLP--------------CNVHSPTAACL---PRG-C 394 (1080)
T ss_pred cCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeecccc--------------ccccCcccccC---Ccc-c
Confidence 34456677788899999999865543332222222222222211110 01111111111 222 4
Q ss_pred EEEEeCCCeEEEEeCCCCc---e----------EEE------------------------EeccCCCEEEEEEcCCCCEE
Q 005096 159 LITGSQSGEFTLWNGQSFN---F----------EMI------------------------LQAHDHAIRSMVWSHNDNWM 201 (715)
Q Consensus 159 Latgs~dg~I~Iwd~~~~~---~----------~~~------------------------l~~h~~~V~~l~~spdg~~L 201 (715)
++|+++|++|+|||++... . .++ .......|.+++.++++++|
T Consensus 395 F~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhL 474 (1080)
T KOG1408|consen 395 FTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHL 474 (1080)
T ss_pred eeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCccee
Confidence 8999999999999977521 1 000 01123468999999999999
Q ss_pred EEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEec---CCCEEEEEECCCcEEEEECC-CCeeEEEecccCCceEEEE
Q 005096 202 VSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCR---TDLKFCSCSDDTTVKVWDFA-RCQEERSLTGHGWDVKSVD 277 (715)
Q Consensus 202 ~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp---d~~~Las~s~Dg~V~iwdl~-~~~~~~~l~~~~~~I~si~ 277 (715)
++|+..|.|+||++...+....+..|+..|.|+.|+. ..++||+++.|..|.|||+. +...+.++.+|...|++|.
T Consensus 475 AsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvK 554 (1080)
T KOG1408|consen 475 ASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVK 554 (1080)
T ss_pred cccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEE
Confidence 9999999999999999998889999999999999986 34779999999999999995 4556788899999999999
Q ss_pred EcCCC--CEEEEEeCCCcEEEEECCCCceeEEec-----cCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEe
Q 005096 278 WHPTK--SLLVSGGKDSLVKLWDAKSGRELCSFH-----GHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESF 350 (715)
Q Consensus 278 ~spdg--~~L~sgs~Dg~I~iwDl~s~~~~~~~~-----~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~ 350 (715)
|--.| ..+++++.|..|.+--.........+. ..+..+..++..++.+++++++.|+.|+|||+.+++.++.|
T Consensus 555 Fa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~F 634 (1080)
T KOG1408|consen 555 FACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSF 634 (1080)
T ss_pred EeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeee
Confidence 98777 678899999877554332211122221 12456889999999999999999999999999999999999
Q ss_pred ec---CCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEec
Q 005096 351 RG---HRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCR 427 (715)
Q Consensus 351 ~~---h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl 427 (715)
++ |++....+...| .+.||++.+.|.+|.|+|+.+++...... +|...|+.+.|.+|-+.|++++.||.|.||.+
T Consensus 635 Kgs~~~eG~lIKv~lDP-SgiY~atScsdktl~~~Df~sgEcvA~m~-GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~l 712 (1080)
T KOG1408|consen 635 KGSRDHEGDLIKVILDP-SGIYLATSCSDKTLCFVDFVSGECVAQMT-GHSEAVTGVKFLNDCKHLISVSGDGCIFVWKL 712 (1080)
T ss_pred cccccCCCceEEEEECC-CccEEEEeecCCceEEEEeccchhhhhhc-CcchheeeeeecccchhheeecCCceEEEEEC
Confidence 85 567788899999 89999999999999999999888776665 69999999999999999999999999999998
Q ss_pred CC
Q 005096 428 NR 429 (715)
Q Consensus 428 ~~ 429 (715)
..
T Consensus 713 p~ 714 (1080)
T KOG1408|consen 713 PL 714 (1080)
T ss_pred ch
Confidence 65
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.1e-27 Score=254.05 Aligned_cols=240 Identities=24% Similarity=0.463 Sum_probs=219.7
Q ss_pred CccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEec-cCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceee
Q 005096 144 RCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQA-HDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKA 222 (715)
Q Consensus 144 ~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~-h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~ 222 (715)
.+.|+++.|+++|++|++|..+|.|.|||.++.+.+..+.+ |...|-+++|. +..+.+|+.|+.|.++|+...+...
T Consensus 217 ~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~ 294 (484)
T KOG0305|consen 217 EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVV 294 (484)
T ss_pred CCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhh
Confidence 88999999999999999999999999999999999999998 99999999997 7789999999999999998875444
Q ss_pred e-ecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCC-CCEEEEEe--CCCcEEEEE
Q 005096 223 N-KSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPT-KSLLVSGG--KDSLVKLWD 298 (715)
Q Consensus 223 ~-~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spd-g~~L~sgs--~Dg~I~iwD 298 (715)
. +..|...|..++|++|+++||+|+.|+.|.|||......+..+..|...|.+++|+|- ..+||+|+ .|++|++||
T Consensus 295 ~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn 374 (484)
T KOG0305|consen 295 STLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWN 374 (484)
T ss_pred hhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEE
Confidence 4 8889999999999999999999999999999999888889999999999999999995 45788764 699999999
Q ss_pred CCCCceeEEeccCCCceEEEEEcCCCCEEEE--EECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCC
Q 005096 299 AKSGRELCSFHGHKNMVLCVKWNQNGNWVLT--ASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLD 376 (715)
Q Consensus 299 l~s~~~~~~~~~~~~~I~sl~~spdg~~Las--gs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~D 376 (715)
..+++.+..+. ....|++|.|++..+-|++ |..++.|.||+..+.+.+..+.+|...|..++++| ++..|++|+.|
T Consensus 375 ~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SP-dg~~i~t~a~D 452 (484)
T KOG0305|consen 375 TNTGARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSP-DGETIVTGAAD 452 (484)
T ss_pred cCCCcEecccc-cCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECC-CCCEEEEeccc
Confidence 99999988876 5678999999998876765 44677999999999999999999999999999999 89999999999
Q ss_pred CcEEEEEcCCC
Q 005096 377 GSIFHWLVGHE 387 (715)
Q Consensus 377 G~I~iwd~~~~ 387 (715)
.++++|++-..
T Consensus 453 ETlrfw~~f~~ 463 (484)
T KOG0305|consen 453 ETLRFWNLFDE 463 (484)
T ss_pred CcEEeccccCC
Confidence 99999998654
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-26 Score=249.96 Aligned_cols=372 Identities=19% Similarity=0.321 Sum_probs=277.7
Q ss_pred CCCCCCCCcccchhhhhcccccccceEeeehhhheeeEEEEEeccCCCccccccCchhhhcCccceeecCCCCCceeeeE
Q 005096 56 PSNPPYDAHGDSFAAKRMRKLTQRRAVDYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSFAAKF 135 (715)
Q Consensus 56 p~~~~~~~h~~~~~~~r~~~~~~~~~~~~~~~~~~~~~irvW~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 135 (715)
..-..+.||+|+|....|.+... ..-++++...|..||+|++...+... ..........+...............-.
T Consensus 182 ~~v~el~GH~DWIrsl~f~~~~~--~~~~laS~SQD~yIRiW~i~~~~~~~-~~~~e~~~t~~~~~~~f~~l~~i~~~is 258 (764)
T KOG1063|consen 182 ARVAELEGHTDWIRSLAFARLGG--DDLLLASSSQDRYIRIWRIVLGDDED-SNEREDSLTTLSNLPVFMILEEIQYRIS 258 (764)
T ss_pred eEEEEeeccchhhhhhhhhccCC--CcEEEEecCCceEEEEEEEEecCCcc-ccccccccccccCCceeeeeeeEEEEEe
Confidence 33456789999999988877544 34577888899999999986554333 1111111111111000000000001111
Q ss_pred EEEecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC--ceEEE-----EeccCCCEEEEEEcCCCCEEEEEeCCC
Q 005096 136 VHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSF--NFEMI-----LQAHDHAIRSMVWSHNDNWMVSGDDGG 208 (715)
Q Consensus 136 ~~~~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~--~~~~~-----l~~h~~~V~~l~~spdg~~L~tgs~dg 208 (715)
++..+.||.+.|+++.|++++..|++++.|.++.||.-++. --+.. ..+.........|+++++.+++-+..|
T Consensus 259 ~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~G 338 (764)
T KOG1063|consen 259 FEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTG 338 (764)
T ss_pred hhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccC
Confidence 23456699999999999999999999999999999975543 22222 223345688999999999999999999
Q ss_pred cEEEEeCCCC---ceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECC----CCeeEEEecccCCceEEEEEcCC
Q 005096 209 AIKYWQNNMN---NVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFA----RCQEERSLTGHGWDVKSVDWHPT 281 (715)
Q Consensus 209 ~I~iwd~~~~---~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~----~~~~~~~l~~~~~~I~si~~spd 281 (715)
..++|..... .....+.+|.+.|++++|.+.|++|++++.|-+-|+|--- +..++..-..|+..++|++|-+.
T Consensus 339 g~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~ 418 (764)
T KOG1063|consen 339 GFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNE 418 (764)
T ss_pred cEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccC
Confidence 9999983332 2344567899999999999999999999999999998643 12333444568889999999986
Q ss_pred CCEEEEEeCCCcEEEEECCC-------------------------------------------Cce--------------
Q 005096 282 KSLLVSGGKDSLVKLWDAKS-------------------------------------------GRE-------------- 304 (715)
Q Consensus 282 g~~L~sgs~Dg~I~iwDl~s-------------------------------------------~~~-------------- 304 (715)
...|++|.++..+|+|+.-. |..
T Consensus 419 ~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~ 498 (764)
T KOG1063|consen 419 DLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPC 498 (764)
T ss_pred CceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCch
Confidence 67788888888899987310 000
Q ss_pred -------------------eEEeccCCCceEEEEEcCCCCEEEEEECCC-----eEEEEECCCCeEEEEeecCCCCeEEE
Q 005096 305 -------------------LCSFHGHKNMVLCVKWNQNGNWVLTASKDQ-----IIKLYDIRAMKELESFRGHRKDVTAL 360 (715)
Q Consensus 305 -------------------~~~~~~~~~~I~sl~~spdg~~Lasgs~dg-----~I~iwDl~t~~~~~~~~~h~~~V~~l 360 (715)
+.++-+|...|.+++.++++++||+++... .|+||+..++..+..+..|.-.|+.|
T Consensus 499 ~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l 578 (764)
T KOG1063|consen 499 ELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRL 578 (764)
T ss_pred hccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEE
Confidence 111226778899999999999999998554 69999999999999999999999999
Q ss_pred EEccCCCCEEEEEeCCCcEEEEEcCCCCce---EEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCCCC
Q 005096 361 AWHPFHEEYFVSGSLDGSIFHWLVGHETPQ---VEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPG 431 (715)
Q Consensus 361 ~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~---~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~ 431 (715)
+|++ ++++|++.+.|.++.+|........ ....+.|..-|++++|+|++.+|+|+|.|.+|+||......
T Consensus 579 ~FSp-dg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~ 651 (764)
T KOG1063|consen 579 AFSP-DGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLR 651 (764)
T ss_pred EECC-CCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCch
Confidence 9999 9999999999999999988543322 23366799999999999999999999999999999987653
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.8e-26 Score=225.21 Aligned_cols=267 Identities=21% Similarity=0.309 Sum_probs=224.0
Q ss_pred CccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeee
Q 005096 144 RCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKAN 223 (715)
Q Consensus 144 ~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~ 223 (715)
.+.|++|.|++.+..|++++.||++++||+....+...+ .|...+.+++|.. ...+++|+.||.|+++|++++....
T Consensus 13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~-~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~~- 89 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKF-KHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNEDQ- 89 (323)
T ss_pred hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhe-ecCCceeeeeccC-CceEEEeccCceEEEEEecCCccee-
Confidence 678999999999999999999999999999887555444 4889999999985 6788999999999999999887654
Q ss_pred ecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 005096 224 KSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGR 303 (715)
Q Consensus 224 ~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~ 303 (715)
+..|...|.||.++.....+++|++|++|++||.+....+..+. ....|.++... ++.|++|+.|..|.+||+++..
T Consensus 90 igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn~~ 166 (323)
T KOG1036|consen 90 IGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCMDVS--GNRLVVGTSDRKVLIYDLRNLD 166 (323)
T ss_pred eccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccc-cCceEEEEecc--CCEEEEeecCceEEEEEccccc
Confidence 45799999999999988999999999999999998755555554 34488888887 7899999999999999999866
Q ss_pred eeEEe--ccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCC----eEEEEeecCCC---------CeEEEEEccCCCC
Q 005096 304 ELCSF--HGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAM----KELESFRGHRK---------DVTALAWHPFHEE 368 (715)
Q Consensus 304 ~~~~~--~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~----~~~~~~~~h~~---------~V~~l~~sp~~~~ 368 (715)
..... ...+-.++||++.|++.-+++++.||+|.+=.++.. +....|++|.. .|++|+|+| -..
T Consensus 167 ~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp-~~~ 245 (323)
T KOG1036|consen 167 EPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHP-IHG 245 (323)
T ss_pred chhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEecc-ccc
Confidence 54422 234567899999998888999999999988777665 44556666653 489999999 578
Q ss_pred EEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEEC
Q 005096 369 YFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSN 418 (715)
Q Consensus 369 ~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~ 418 (715)
.|+||+.||.|.+||..+.+.+..+... +..|..++|+.||..||+++.
T Consensus 246 tfaTgGsDG~V~~Wd~~~rKrl~q~~~~-~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 246 TFATGGSDGIVNIWDLFNRKRLKQLAKY-ETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred eEEecCCCceEEEccCcchhhhhhccCC-CCceEEEEeccCCCeEEEEec
Confidence 8999999999999999988877666653 667999999999999999875
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-27 Score=255.38 Aligned_cols=320 Identities=19% Similarity=0.274 Sum_probs=260.5
Q ss_pred eeehhhheeeEEEEEeccCCCccccccCchhhhcCccceeecCCCCCceeeeEEEEecCCCCccEEEEEEcCCCCEEEEE
Q 005096 83 DYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSFAAKFVHTSLNKNRCSINRVLWTPTGRRLITG 162 (715)
Q Consensus 83 ~~~~~~~~~~~irvW~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~~l~~spdg~~Latg 162 (715)
+|+-+..|++.||+|+........-.+ ...+++.|.+.|+.++...+++.|+++
T Consensus 38 ryLfTgGRDg~i~~W~~~~d~~~~s~~--------------------------~~asme~HsDWVNDiiL~~~~~tlIS~ 91 (735)
T KOG0308|consen 38 RYLFTGGRDGIIRLWSVTQDSNEPSTP--------------------------YIASMEHHSDWVNDIILCGNGKTLISA 91 (735)
T ss_pred ceEEecCCCceEEEeccccccCCcccc--------------------------hhhhhhhhHhHHhhHHhhcCCCceEEe
Confidence 478889999999999865332111000 122577899999999999999999999
Q ss_pred eCCCeEEEEeCCCC--ceEEEEeccCCCEEEEEE-cCCCCEEEEEeCCCcEEEEeCCCCc--eee--------ee-cCCC
Q 005096 163 SQSGEFTLWNGQSF--NFEMILQAHDHAIRSMVW-SHNDNWMVSGDDGGAIKYWQNNMNN--VKA--------NK-SAHK 228 (715)
Q Consensus 163 s~dg~I~Iwd~~~~--~~~~~l~~h~~~V~~l~~-spdg~~L~tgs~dg~I~iwd~~~~~--~~~--------~~-~~h~ 228 (715)
+.|-+|++|+.... -+..++..|...|.|+++ ..+..++|+|+-|+.|.|||++++. ++. .+ .+++
T Consensus 92 SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k 171 (735)
T KOG0308|consen 92 SSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPK 171 (735)
T ss_pred cCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCc
Confidence 99999999998877 577888999999999999 7788889999999999999999762 211 12 2788
Q ss_pred CCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEe
Q 005096 229 ESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSF 308 (715)
Q Consensus 229 ~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~ 308 (715)
..|.+++..+.+..|++|+.++.|++||.++++.+..+.+|...|+++..+.||..+++++.||+|++||+...+|+.++
T Consensus 172 ~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~ 251 (735)
T KOG0308|consen 172 DSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATY 251 (735)
T ss_pred cceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeE
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCC
Q 005096 309 HGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHET 388 (715)
Q Consensus 309 ~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~ 388 (715)
..|+..|+++..+++-.++++|+.||.|..-|+++......+...+..|..+..+. .++-+.+++.|+.|+-|...-..
T Consensus 252 ~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~-~~~~~WvtTtds~I~rW~~~~~~ 330 (735)
T KOG0308|consen 252 IVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHE-HDNSVWVTTTDSSIKRWKLEPDI 330 (735)
T ss_pred EeccCceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecCCCchhhhhhcc-ccCCceeeeccccceecCCcccc
Confidence 99999999999999999999999999999999998654444444667777777775 34444677788999999653211
Q ss_pred ce-----------------EEE------eeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCC
Q 005096 389 PQ-----------------VEI------HNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNR 429 (715)
Q Consensus 389 ~~-----------------~~~------~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~ 429 (715)
.+ ... .......|...+...|.++++|-..+|.+.+||+-.
T Consensus 331 ~l~~s~~~~~~~T~~~~~~~~~~~tp~~vi~Gg~ai~k~~mL~dkRhVlTkDa~gnv~lwDIl~ 394 (735)
T KOG0308|consen 331 ALSVSGDLDFFSTDSNNHSCDLTNTPDSVIPGGAAIKKHAMLNDKRHVLTKDAKGNVALWDILA 394 (735)
T ss_pred ccccCCCCCcccccCCCccccccCCCceeccCchhhhhhhhhcCcceEeeecCCCCEEEEEeee
Confidence 00 000 000111344455666889999999999999999854
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.1e-26 Score=259.97 Aligned_cols=248 Identities=22% Similarity=0.355 Sum_probs=219.1
Q ss_pred ecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCC------------------CCceEEEEeccCCCEEEEEEcCCCCE
Q 005096 139 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQ------------------SFNFEMILQAHDHAIRSMVWSHNDNW 200 (715)
Q Consensus 139 ~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~------------------~~~~~~~l~~h~~~V~~l~~spdg~~ 200 (715)
....|.+.|+|+.|++||++||+|++|+.|.||+.. .++.+.++.+|+..|.+++|+|++.+
T Consensus 64 ~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~ 143 (942)
T KOG0973|consen 64 TMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSL 143 (942)
T ss_pred eeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccE
Confidence 567899999999999999999999999999999865 23467889999999999999999999
Q ss_pred EEEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccC------CceE
Q 005096 201 MVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHG------WDVK 274 (715)
Q Consensus 201 L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~------~~I~ 274 (715)
|++++.|++|.|||..+.+.+..+.+|...|..+.|.|-|++||+-++|++|+||++.+....+.+.++- .-+.
T Consensus 144 lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~ 223 (942)
T KOG0973|consen 144 LVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFL 223 (942)
T ss_pred EEEecccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceee
Confidence 9999999999999999999999999999999999999999999999999999999998877777776543 3477
Q ss_pred EEEEcCCCCEEEEEeC----CCcEEEEECCCCceeEEeccCCCceEEEEEcCC-----CC------------EEEEEECC
Q 005096 275 SVDWHPTKSLLVSGGK----DSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQN-----GN------------WVLTASKD 333 (715)
Q Consensus 275 si~~spdg~~L~sgs~----Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spd-----g~------------~Lasgs~d 333 (715)
.+.|+|||.+|++... -.++.|.+-.+.+.-..+-+|.+.+.+++|+|. .+ .+|+|+.|
T Consensus 224 RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqD 303 (942)
T KOG0973|consen 224 RLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQD 303 (942)
T ss_pred ecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCC
Confidence 8999999999998643 346889998888888899999999999999871 11 67889999
Q ss_pred CeEEEEECCCCeEEEEee-cCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCC
Q 005096 334 QIIKLYDIRAMKELESFR-GHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHE 387 (715)
Q Consensus 334 g~I~iwDl~t~~~~~~~~-~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~ 387 (715)
++|.||.....+.+..+. .....|.+++|++ ++..|++++.||+|.++.++.+
T Consensus 304 rSlSVW~T~~~RPl~vi~~lf~~SI~DmsWsp-dG~~LfacS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 304 RSLSVWNTALPRPLFVIHNLFNKSIVDMSWSP-DGFSLFACSLDGTVALIHFEEK 357 (942)
T ss_pred ccEEEEecCCCCchhhhhhhhcCceeeeeEcC-CCCeEEEEecCCeEEEEEcchH
Confidence 999999998777765543 4678899999999 8999999999999999998654
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.8e-26 Score=220.01 Aligned_cols=249 Identities=20% Similarity=0.364 Sum_probs=217.8
Q ss_pred EEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceee--eecCCCCCeEEEEEec-CCCEEEEEECCCcEEEEE
Q 005096 180 MILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKA--NKSAHKESVRDLSFCR-TDLKFCSCSDDTTVKVWD 256 (715)
Q Consensus 180 ~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~--~~~~h~~~I~~l~~sp-d~~~Las~s~Dg~V~iwd 256 (715)
+.+.+|...|.+|+|+.+|..|++|+.|+++.||+++..+... ...+|.+.|..++|++ ....|++++.|.+|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 5567888999999999999999999999999999998775433 3467888999999987 457899999999999999
Q ss_pred CCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeE
Q 005096 257 FARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQII 336 (715)
Q Consensus 257 l~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I 336 (715)
++.+++...+....+.| -+.|+|+|+++++++.|..|.+.|.++.+.+...+ ....+..++|+.++++++..+..|+|
T Consensus 94 ~r~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~~w~~~nd~Fflt~GlG~v 171 (313)
T KOG1407|consen 94 IRSGKCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEISWNNSNDLFFLTNGLGCV 171 (313)
T ss_pred eccCcEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEecccceeehhc-ccceeeeeeecCCCCEEEEecCCceE
Confidence 99999998887655554 68899999999999999999999999887776655 56678899999888888888888999
Q ss_pred EEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEE
Q 005096 337 KLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSG 416 (715)
Q Consensus 337 ~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sg 416 (715)
.|......+.+.+++.|.....||.|+| ++++||+|+.|-.+.+||++.--++. .+..++-+|..|+|+.||++||++
T Consensus 172 ~ILsypsLkpv~si~AH~snCicI~f~p-~GryfA~GsADAlvSLWD~~ELiC~R-~isRldwpVRTlSFS~dg~~lASa 249 (313)
T KOG1407|consen 172 EILSYPSLKPVQSIKAHPSNCICIEFDP-DGRYFATGSADALVSLWDVDELICER-CISRLDWPVRTLSFSHDGRMLASA 249 (313)
T ss_pred EEEeccccccccccccCCcceEEEEECC-CCceEeeccccceeeccChhHhhhhe-eeccccCceEEEEeccCcceeecc
Confidence 9999999999999999999999999999 89999999999999999997665554 444588899999999999999999
Q ss_pred ECCCeEEEEecCCCCC
Q 005096 417 SNDHTTKFWCRNRPGD 432 (715)
Q Consensus 417 s~Dg~I~iWdl~~~~~ 432 (715)
++|..|-|=++.+..+
T Consensus 250 SEDh~IDIA~vetGd~ 265 (313)
T KOG1407|consen 250 SEDHFIDIAEVETGDR 265 (313)
T ss_pred CccceEEeEecccCCe
Confidence 9999998887765444
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.8e-25 Score=247.24 Aligned_cols=224 Identities=20% Similarity=0.347 Sum_probs=182.1
Q ss_pred EeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecC-CCEEEEEECCCcEEEEECCCCe--------eEEEecccCCceE
Q 005096 204 GDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRT-DLKFCSCSDDTTVKVWDFARCQ--------EERSLTGHGWDVK 274 (715)
Q Consensus 204 gs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd-~~~Las~s~Dg~V~iwdl~~~~--------~~~~l~~~~~~I~ 274 (715)
|+.++.|++|+......+..+.+|...|.+++|+++ +.+|++|+.|++|+|||+.+.. .+..+.+|...|.
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~ 129 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence 566789999998877778888999999999999996 7899999999999999997532 2346778999999
Q ss_pred EEEEcCCCCE-EEEEeCCCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecC
Q 005096 275 SVDWHPTKSL-LVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGH 353 (715)
Q Consensus 275 si~~spdg~~-L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h 353 (715)
+++|+|++.. |++++.|++|+|||+++++.+..+. +...|.+++|+++|++|++++.|+.|+|||+++++.+.++.+|
T Consensus 130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH 208 (568)
T PTZ00420 130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIH 208 (568)
T ss_pred EEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecc
Confidence 9999999875 5788999999999999998877776 5678999999999999999999999999999999999999999
Q ss_pred CCCeEEEE-----EccCCCCEEEEEeCCC----cEEEEEcCCCCceEEEeec--cCCCEEEEEEcCCCCEEEEEECCCeE
Q 005096 354 RKDVTALA-----WHPFHEEYFVSGSLDG----SIFHWLVGHETPQVEIHNV--HDNTVWDLAWHPIGYLLCSGSNDHTT 422 (715)
Q Consensus 354 ~~~V~~l~-----~sp~~~~~l~sgs~DG----~I~iwd~~~~~~~~~~~~~--h~~~V~~l~~spdg~~L~sgs~Dg~I 422 (715)
.+.+.+.. |++ ++.+|++++.|+ .|+|||++.....+..... +.+.+.......++.++++|+.|++|
T Consensus 209 ~g~~~s~~v~~~~fs~-d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tI 287 (568)
T PTZ00420 209 DGGKNTKNIWIDGLGG-DDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNC 287 (568)
T ss_pred cCCceeEEEEeeeEcC-CCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeE
Confidence 87654433 345 667788777664 7999999865444333322 22333333344558899999999999
Q ss_pred EEEecCC
Q 005096 423 KFWCRNR 429 (715)
Q Consensus 423 ~iWdl~~ 429 (715)
++|++..
T Consensus 288 r~~e~~~ 294 (568)
T PTZ00420 288 RYYQHSL 294 (568)
T ss_pred EEEEccC
Confidence 9999964
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.9e-27 Score=238.36 Aligned_cols=240 Identities=19% Similarity=0.321 Sum_probs=212.4
Q ss_pred EecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 005096 138 TSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNM 217 (715)
Q Consensus 138 ~~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~ 217 (715)
.+|.+-.+.|++++|..+++++++++.|+.+++|++.......++.+|.+.|+++.|......+++|+.|.+|++||+..
T Consensus 213 ~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k 292 (459)
T KOG0288|consen 213 STLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQK 292 (459)
T ss_pred hhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhh
Confidence 36778888999999999999999999999999999999999999999999999999988777799999999999999998
Q ss_pred CceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEE
Q 005096 218 NNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLW 297 (715)
Q Consensus 218 ~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iw 297 (715)
..+..++. ....+.+|+.+ ...++++-.|++|++||+++.........+. .|+++..+.++..|++++.|.++.++
T Consensus 293 ~~C~kt~l-~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~vi 368 (459)
T KOG0288|consen 293 AYCSKTVL-PGSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVI 368 (459)
T ss_pred hheecccc-ccccccceEec--ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeee
Confidence 77666543 34456666664 5678889999999999999999998888665 99999999999999999999999999
Q ss_pred ECCCCceeEEeccC----CCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCC--eEEEEEccCCCCEEE
Q 005096 298 DAKSGRELCSFHGH----KNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKD--VTALAWHPFHEEYFV 371 (715)
Q Consensus 298 Dl~s~~~~~~~~~~----~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~--V~~l~~sp~~~~~l~ 371 (715)
|+++.+....+... ....+.+.|||++.|+++|+.||.|+||++.++++...+...... |++++|++ .+..++
T Consensus 369 DlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~-sG~~Ll 447 (459)
T KOG0288|consen 369 DLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNP-SGSGLL 447 (459)
T ss_pred ecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcC-CCchhh
Confidence 99998877776532 234788999999999999999999999999999999888866655 99999999 889999
Q ss_pred EEeCCCcEEEE
Q 005096 372 SGSLDGSIFHW 382 (715)
Q Consensus 372 sgs~DG~I~iw 382 (715)
+++.++.+.+|
T Consensus 448 sadk~~~v~lW 458 (459)
T KOG0288|consen 448 SADKQKAVTLW 458 (459)
T ss_pred cccCCcceEec
Confidence 99999999999
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.7e-26 Score=242.95 Aligned_cols=315 Identities=20% Similarity=0.304 Sum_probs=247.9
Q ss_pred CccccccCchhhhcCccceeecCCCCCceeeeEEEEecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEE
Q 005096 103 DRTVLQATPAAAIDMLPTVAYTDNPSTSFAAKFVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMIL 182 (715)
Q Consensus 103 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l 182 (715)
.+..+..++...+..||....... | ...+...+.+|++.|.||+..+.|.+|++|+.||+|+||.+.++.+++.+
T Consensus 364 rK~rlniDpe~LiPkLPsp~dLrP----F-Pt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~ 438 (733)
T KOG0650|consen 364 RKMRLNIDPESLIPKLPSPKDLRP----F-PTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTV 438 (733)
T ss_pred ccceecCCHHHhcccCCChhhcCC----C-cceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEE
Confidence 344455556666666664332221 1 12244567899999999999999999999999999999999999999988
Q ss_pred eccCCCEEEEEEcCCCC--EEEEEeCCCcEEEEeCCCC-------------------------------------ceeee
Q 005096 183 QAHDHAIRSMVWSHNDN--WMVSGDDGGAIKYWQNNMN-------------------------------------NVKAN 223 (715)
Q Consensus 183 ~~h~~~V~~l~~spdg~--~L~tgs~dg~I~iwd~~~~-------------------------------------~~~~~ 223 (715)
.. ++.|.||+|++.++ .||++.. ..+.|.+..-+ .-++.
T Consensus 439 ~~-d~~I~~vaw~P~~~~~vLAvA~~-~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~ 516 (733)
T KOG0650|consen 439 QF-DSEIRSVAWNPLSDLCVLAVAVG-ECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCI 516 (733)
T ss_pred ee-cceeEEEEecCCCCceeEEEEec-CceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEE
Confidence 74 66999999999764 3343332 23443331110 01223
Q ss_pred ecCCCCCeEEEEEecCCCEEEEEECC---CcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 005096 224 KSAHKESVRDLSFCRTDLKFCSCSDD---TTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAK 300 (715)
Q Consensus 224 ~~~h~~~I~~l~~spd~~~Las~s~D---g~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~ 300 (715)
...|...|+.+.|+..|.||++...+ ..|.|.++.......-|....+.|.++.|+|...+|++++. ..|+|||+.
T Consensus 517 ~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~ 595 (733)
T KOG0650|consen 517 VIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLS 595 (733)
T ss_pred EEecCCccceeeeecCCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehh
Confidence 34577889999999999999988664 56999999877777777777889999999999999998876 679999999
Q ss_pred CCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCC-eEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcE
Q 005096 301 SGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAM-KELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSI 379 (715)
Q Consensus 301 s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~-~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I 379 (715)
..+.+.++.....+|.++++++.|..|++++.|+.+..||+.-. +..++++.|...|++|+|++ .-.+|++|+.||++
T Consensus 596 kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~-ryPLfas~sdDgtv 674 (733)
T KOG0650|consen 596 KQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHK-RYPLFASGSDDGTV 674 (733)
T ss_pred HHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhcc-ccceeeeecCCCcE
Confidence 88888888878889999999999999999999999999999754 56788899999999999998 88899999999999
Q ss_pred EEEEcC------CC--CceEEEeeccCCC----EEEEEEcCCCCEEEEEECCCeEEEEe
Q 005096 380 FHWLVG------HE--TPQVEIHNVHDNT----VWDLAWHPIGYLLCSGSNDHTTKFWC 426 (715)
Q Consensus 380 ~iwd~~------~~--~~~~~~~~~h~~~----V~~l~~spdg~~L~sgs~Dg~I~iWd 426 (715)
.||.-. .+ -..++.+.+|... |.++.|+|..-+|++++.||+|++|.
T Consensus 675 ~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlfT 733 (733)
T KOG0650|consen 675 IVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLFT 733 (733)
T ss_pred EEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEeeC
Confidence 998432 11 1234455666654 89999999999999999999999993
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.1e-26 Score=236.08 Aligned_cols=246 Identities=25% Similarity=0.466 Sum_probs=207.2
Q ss_pred eccCCCEEEEEEcCCC-CEEEEEeCCCcEEEEeCCCCce----------eeeecCCCCCeEEEEEecCC-CEEEEEECCC
Q 005096 183 QAHDHAIRSMVWSHND-NWMVSGDDGGAIKYWQNNMNNV----------KANKSAHKESVRDLSFCRTD-LKFCSCSDDT 250 (715)
Q Consensus 183 ~~h~~~V~~l~~spdg-~~L~tgs~dg~I~iwd~~~~~~----------~~~~~~h~~~I~~l~~spd~-~~Las~s~Dg 250 (715)
..|.+.|+.+.+-|.. ++|++.+..+.|.|||..+... ...+.+|...-.+|+|+... -+|++++.|+
T Consensus 121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~ 200 (422)
T KOG0264|consen 121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDH 200 (422)
T ss_pred ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCC
Confidence 4689999999998865 5667788899999999765321 12567888878889998854 5689999999
Q ss_pred cEEEEECCCCe-------eEEEecccCCceEEEEEcCCC-CEEEEEeCCCcEEEEECC--CCceeEEeccCCCceEEEEE
Q 005096 251 TVKVWDFARCQ-------EERSLTGHGWDVKSVDWHPTK-SLLVSGGKDSLVKLWDAK--SGRELCSFHGHKNMVLCVKW 320 (715)
Q Consensus 251 ~V~iwdl~~~~-------~~~~l~~~~~~I~si~~spdg-~~L~sgs~Dg~I~iwDl~--s~~~~~~~~~~~~~I~sl~~ 320 (715)
+|++||+.... ....+.+|...|..++|++.. .+|+++++|+.+.|||+| +.+......+|.+.|.|++|
T Consensus 201 ~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~f 280 (422)
T KOG0264|consen 201 TICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAF 280 (422)
T ss_pred cEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEe
Confidence 99999995432 245678899999999999854 588899999999999999 55666777889999999999
Q ss_pred cC-CCCEEEEEECCCeEEEEECCCCe-EEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCc---------
Q 005096 321 NQ-NGNWVLTASKDQIIKLYDIRAMK-ELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETP--------- 389 (715)
Q Consensus 321 sp-dg~~Lasgs~dg~I~iwDl~t~~-~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~--------- 389 (715)
+| ++.+||+|+.|++|.|||+|+.+ .+.++.+|+..|..|.|+|....+|++++.|+++.|||+..-..
T Consensus 281 np~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~d 360 (422)
T KOG0264|consen 281 NPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAED 360 (422)
T ss_pred CCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhcc
Confidence 99 66788899999999999999864 57899999999999999999999999999999999999965332
Q ss_pred ----eEEEeeccCCCEEEEEEcCCC-CEEEEEECCCeEEEEecC
Q 005096 390 ----QVEIHNVHDNTVWDLAWHPIG-YLLCSGSNDHTTKFWCRN 428 (715)
Q Consensus 390 ----~~~~~~~h~~~V~~l~~spdg-~~L~sgs~Dg~I~iWdl~ 428 (715)
++-+..+|...|..+.|+|+. ..|+++++|+.+.||+..
T Consensus 361 gppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 361 GPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred CCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 234566799999999999985 678889999999999886
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.3e-25 Score=246.61 Aligned_cols=277 Identities=19% Similarity=0.346 Sum_probs=236.2
Q ss_pred CCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC-ceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc
Q 005096 141 NKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSF-NFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNN 219 (715)
Q Consensus 141 ~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~-~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~ 219 (715)
..|....+.|+|.++|++|++++.||.|++|+..+. +.-.++..+...|.+++. ++++|++|+.+++|.+|.+..++
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~--~s~~f~~~s~~~tv~~y~fps~~ 87 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIAC--YSNHFLTGSEQNTVLRYKFPSGE 87 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEee--cccceEEeeccceEEEeeCCCCC
Confidence 468899999999999999999999999999997765 444555547777888776 45699999999999999999887
Q ss_pred eeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 005096 220 VKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDA 299 (715)
Q Consensus 220 ~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl 299 (715)
.-..+......+++++|+.+|+++|.|++|-.|++.++.+...+..+.+|...|.+|.|+|++++||+.+.||.|+|||+
T Consensus 88 ~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~ 167 (933)
T KOG1274|consen 88 EDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDL 167 (933)
T ss_pred ccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEc
Confidence 77666777889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeEEecc--------CCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeec--CCCCeEEEEEccCCCCE
Q 005096 300 KSGRELCSFHG--------HKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRG--HRKDVTALAWHPFHEEY 369 (715)
Q Consensus 300 ~s~~~~~~~~~--------~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~--h~~~V~~l~~sp~~~~~ 369 (715)
.++.+...+.+ ....+..++|+|++..|++.+.|+.|++|+..+++....++. +...+.++.|+| ++.|
T Consensus 168 ~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsP-nG~Y 246 (933)
T KOG1274|consen 168 QDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSP-NGKY 246 (933)
T ss_pred ccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcC-CCcE
Confidence 99887666542 134567789999988888888999999999999998887763 444599999999 8999
Q ss_pred EEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEE
Q 005096 370 FVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFW 425 (715)
Q Consensus 370 l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iW 425 (715)
||+++.||.|.|||+++-.. ......|++++|.++...|-.....|...+|
T Consensus 247 iAAs~~~g~I~vWnv~t~~~-----~~~~~~Vc~~aw~p~~n~it~~~~~g~~~~~ 297 (933)
T KOG1274|consen 247 IAASTLDGQILVWNVDTHER-----HEFKRAVCCEAWKPNANAITLITALGTLGVS 297 (933)
T ss_pred EeeeccCCcEEEEecccchh-----ccccceeEEEecCCCCCeeEEEeeccccccC
Confidence 99999999999999987221 2235689999999998766665555655555
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.7e-24 Score=215.29 Aligned_cols=257 Identities=18% Similarity=0.252 Sum_probs=216.7
Q ss_pred CceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEEC--CCcEE
Q 005096 176 FNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSD--DTTVK 253 (715)
Q Consensus 176 ~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~--Dg~V~ 253 (715)
.+..+.+......|+++.|+.+|.+|++++.|.+|+|||..+++...++..++-.|..++|....+.++.++. |.+|+
T Consensus 4 ~~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIr 83 (311)
T KOG1446|consen 4 FRPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIR 83 (311)
T ss_pred cccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceE
Confidence 3455566667789999999999999999999999999999999999999989899999999888888777776 88999
Q ss_pred EEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECC
Q 005096 254 VWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKD 333 (715)
Q Consensus 254 iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~d 333 (715)
..++.+.+.++-|.+|...|++|+.+|-++.+++++.|++|++||++..++...+.... -..++|+|+|-++|++...
T Consensus 84 yLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~--~pi~AfDp~GLifA~~~~~ 161 (311)
T KOG1446|consen 84 YLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSG--RPIAAFDPEGLIFALANGS 161 (311)
T ss_pred EEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCC--CcceeECCCCcEEEEecCC
Confidence 99999999999999999999999999999999999999999999999888877765333 3457899999999999988
Q ss_pred CeEEEEECCCCe--EEEEee---cCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCC---CEEEEE
Q 005096 334 QIIKLYDIRAMK--ELESFR---GHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDN---TVWDLA 405 (715)
Q Consensus 334 g~I~iwDl~t~~--~~~~~~---~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~---~V~~l~ 405 (715)
..|+|||+|... ...++. ......+.|.|++ ++++|+.++..+.+++.|.-++.....+. .+.. .-...+
T Consensus 162 ~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~-dGK~iLlsT~~s~~~~lDAf~G~~~~tfs-~~~~~~~~~~~a~ 239 (311)
T KOG1446|consen 162 ELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSP-DGKSILLSTNASFIYLLDAFDGTVKSTFS-GYPNAGNLPLSAT 239 (311)
T ss_pred CeEEEEEecccCCCCceeEccCCCCccceeeeEEcC-CCCEEEEEeCCCcEEEEEccCCcEeeeEe-eccCCCCcceeEE
Confidence 899999999752 334443 3467899999999 88888888999999999987776443333 2222 225778
Q ss_pred EcCCCCEEEEEECCCeEEEEecCCCCCcccc
Q 005096 406 WHPIGYLLCSGSNDHTTKFWCRNRPGDTARD 436 (715)
Q Consensus 406 ~spdg~~L~sgs~Dg~I~iWdl~~~~~~~~~ 436 (715)
|+||+++|++|+.||+|.+|+++......+.
T Consensus 240 ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~ 270 (311)
T KOG1446|consen 240 FTPDSKFVLSGSDDGTIHVWNLETGKKVAVL 270 (311)
T ss_pred ECCCCcEEEEecCCCcEEEEEcCCCcEeeEe
Confidence 9999999999999999999999665554433
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.9e-24 Score=224.99 Aligned_cols=268 Identities=10% Similarity=0.114 Sum_probs=207.5
Q ss_pred CEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEE-EEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEE
Q 005096 157 RRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWM-VSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLS 235 (715)
Q Consensus 157 ~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L-~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~ 235 (715)
+.+++++.|+.|++||+.+++.+..+..+. .+.+++|+++++.+ ++++.++.|++||..+++....+..+. .+..++
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~ 79 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGP-DPELFA 79 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCC-CccEEE
Confidence 568899999999999999999888887654 46789999999876 566788999999999888776655433 357789
Q ss_pred EecCCCEEEEE-ECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCC-cEEEEECCCCceeEEeccCCC
Q 005096 236 FCRTDLKFCSC-SDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDS-LVKLWDAKSGRELCSFHGHKN 313 (715)
Q Consensus 236 ~spd~~~Las~-s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg-~I~iwDl~s~~~~~~~~~~~~ 313 (715)
|+++++.++++ +.|+.|++||+.+.+.+..+.. ...+.+++|++++++++++..++ .+.+||.++++.+..+. ...
T Consensus 80 ~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~-~~~ 157 (300)
T TIGR03866 80 LHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVL-VDQ 157 (300)
T ss_pred ECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEE-cCC
Confidence 99999877655 5689999999998877776653 34578899999999999888765 46778998877665543 234
Q ss_pred ceEEEEEcCCCCEEEEEE-CCCeEEEEECCCCeEEEEeecCC-------CCeEEEEEccCCCCE-EEEEeCCCcEEEEEc
Q 005096 314 MVLCVKWNQNGNWVLTAS-KDQIIKLYDIRAMKELESFRGHR-------KDVTALAWHPFHEEY-FVSGSLDGSIFHWLV 384 (715)
Q Consensus 314 ~I~sl~~spdg~~Lasgs-~dg~I~iwDl~t~~~~~~~~~h~-------~~V~~l~~sp~~~~~-l~sgs~DG~I~iwd~ 384 (715)
.+.+++|++++++|++++ .++.|++||+++++.+..+..+. .....++|++ ++++ +++.+.++.|.+||+
T Consensus 158 ~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~-dg~~~~~~~~~~~~i~v~d~ 236 (300)
T TIGR03866 158 RPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTK-DGKTAFVALGPANRVAVVDA 236 (300)
T ss_pred CccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECC-CCCEEEEEcCCCCeEEEEEC
Confidence 567899999999886554 68999999999998877665321 1235688999 5555 455566778999999
Q ss_pred CCCCceEEEeeccCCCEEEEEEcCCCCEEEEE-ECCCeEEEEecCCCC
Q 005096 385 GHETPQVEIHNVHDNTVWDLAWHPIGYLLCSG-SNDHTTKFWCRNRPG 431 (715)
Q Consensus 385 ~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sg-s~Dg~I~iWdl~~~~ 431 (715)
++.+....+. +...+++++|++++++|+++ +.++.|++||++...
T Consensus 237 ~~~~~~~~~~--~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~ 282 (300)
T TIGR03866 237 KTYEVLDYLL--VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALK 282 (300)
T ss_pred CCCcEEEEEE--eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCc
Confidence 8765443332 34579999999999998876 468999999997643
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.2e-25 Score=228.44 Aligned_cols=240 Identities=18% Similarity=0.292 Sum_probs=218.5
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEe
Q 005096 187 HAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSL 266 (715)
Q Consensus 187 ~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l 266 (715)
..+.++...+..+.+++|+.|..+.++|...+..+..+.+|...|+.+.++++...+++++.|..|+||......+....
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~ 299 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSS 299 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCcccc
Confidence 45778888777788999999999999999999999999999999999999999999999999999999999887788888
Q ss_pred cccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEecc--CCCceEEEEEcCCCCEEEEEECCCeEEEEECCCC
Q 005096 267 TGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHG--HKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAM 344 (715)
Q Consensus 267 ~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~--~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~ 344 (715)
..|...|+.+..++.|+||++++.|+++.+.|+++++.+..... ..-.+++++|+|||.+|.+|..|+.|+|||+++.
T Consensus 300 ~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~ 379 (506)
T KOG0289|consen 300 RPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQ 379 (506)
T ss_pred ccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCc
Confidence 89999999999999999999999999999999999998877653 3345899999999999999999999999999999
Q ss_pred eEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEE
Q 005096 345 KELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKF 424 (715)
Q Consensus 345 ~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~i 424 (715)
..+..|.+|.+.|..|+|+. ++.+|+++++|+.|++||++..+....+.......|.+++|...|.+|+.++.|=.|++
T Consensus 380 ~~~a~Fpght~~vk~i~FsE-NGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~ 458 (506)
T KOG0289|consen 380 TNVAKFPGHTGPVKAISFSE-NGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYI 458 (506)
T ss_pred cccccCCCCCCceeEEEecc-CceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEE
Confidence 99999999999999999998 99999999999999999999887766666555567999999999999999987766666
Q ss_pred Eec
Q 005096 425 WCR 427 (715)
Q Consensus 425 Wdl 427 (715)
++-
T Consensus 459 ~~k 461 (506)
T KOG0289|consen 459 CKK 461 (506)
T ss_pred Eec
Confidence 653
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4e-24 Score=202.27 Aligned_cols=250 Identities=24% Similarity=0.401 Sum_probs=210.4
Q ss_pred eEEEEecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCC--Cc---eEEEEeccCCCEEEEEEcCC----CCEEEEE
Q 005096 134 KFVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQS--FN---FEMILQAHDHAIRSMVWSHN----DNWMVSG 204 (715)
Q Consensus 134 ~~~~~~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~--~~---~~~~l~~h~~~V~~l~~spd----g~~L~tg 204 (715)
..+.+..+.|++.|.|.+|+++|.+|++|+.|.+|++.-.+. .+ ...++..|++.|..++|..+ +.+|+++
T Consensus 79 ~v~~kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~ 158 (350)
T KOG0641|consen 79 SVLCKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASA 158 (350)
T ss_pred eEEeeeccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEec
Confidence 445667788999999999999999999999999999875433 22 24567889999999999654 3566665
Q ss_pred e-CCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecc-------cCCceEEE
Q 005096 205 D-DGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTG-------HGWDVKSV 276 (715)
Q Consensus 205 s-~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~-------~~~~I~si 276 (715)
+ .|..|++-|...+.-...+.+|.+.|.++ ++.++-.|++|+.|.+|++||++-..++.++.. ....|.++
T Consensus 159 gagdc~iy~tdc~~g~~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav 237 (350)
T KOG0641|consen 159 GAGDCKIYITDCGRGQGFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAV 237 (350)
T ss_pred CCCcceEEEeecCCCCcceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEE
Confidence 4 45667777888888888899999999876 455788999999999999999988777776642 23579999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCC----eEEEEeec
Q 005096 277 DWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAM----KELESFRG 352 (715)
Q Consensus 277 ~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~----~~~~~~~~ 352 (715)
++.|.|++|++|-.|....+||++.++.+..+..|...|.|+.|+|...|+++++.|..|++-|+... -.+.....
T Consensus 238 ~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~e 317 (350)
T KOG0641|consen 238 AVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAE 317 (350)
T ss_pred EECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999998631 12344557
Q ss_pred CCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcC
Q 005096 353 HRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVG 385 (715)
Q Consensus 353 h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~ 385 (715)
|+..+..+.|++ .+-.+++.+.|.++.+|.++
T Consensus 318 hkdk~i~~rwh~-~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 318 HKDKAIQCRWHP-QDFSFISSSADKTATLWALN 349 (350)
T ss_pred ccCceEEEEecC-ccceeeeccCcceEEEeccC
Confidence 899999999999 67778888999999999764
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.7e-26 Score=243.75 Aligned_cols=300 Identities=19% Similarity=0.340 Sum_probs=237.1
Q ss_pred eehhhheeeEEEEEeccCCCccccccCchhhhcCccceeecCCCCC-------ceeeeEEEEecCCCCccEEEEEEcCCC
Q 005096 84 YTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPST-------SFAAKFVHTSLNKNRCSINRVLWTPTG 156 (715)
Q Consensus 84 ~~~~~~~~~~irvW~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-------~~~~~~~~~~l~~H~~~I~~l~~spdg 156 (715)
.+.++..+.+||+|+++...............+++. +.|.+.... ....|. ..++-+-+..|.+|++||+|
T Consensus 394 cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~k-i~y~d~~~q~~~d~~~~~fdka-~~s~~d~r~G~R~~~vSp~g 471 (1080)
T KOG1408|consen 394 CFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSK-IPYEDSTQQIMHDASAGIFDKA-LVSTCDSRFGFRALAVSPDG 471 (1080)
T ss_pred ceeEecCCCcEEEeecccccccceeecccchhhhhc-CccccCchhhhhhccCCccccc-chhhcCcccceEEEEECCCc
Confidence 467778899999999987443333211111111111 111111110 111111 12344567789999999999
Q ss_pred CEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCC---CCEEEEEeCCCcEEEEeCCCC-ceeeeecCCCCCeE
Q 005096 157 RRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHN---DNWMVSGDDGGAIKYWQNNMN-NVKANKSAHKESVR 232 (715)
Q Consensus 157 ~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spd---g~~L~tgs~dg~I~iwd~~~~-~~~~~~~~h~~~I~ 232 (715)
++||+|..-|+|+|||+.+.+....+..|+..|.|+.|+.. .++|++++.|..|.|||+..+ .++.++.+|...|+
T Consensus 472 qhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssIT 551 (1080)
T KOG1408|consen 472 QHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSIT 551 (1080)
T ss_pred ceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhccccccee
Confidence 99999999999999999999999999999999999999863 478999999999999998764 56788899999999
Q ss_pred EEEEecCC--CEEEEEECCCcEEEEECCCCeeEEEec-----ccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCcee
Q 005096 233 DLSFCRTD--LKFCSCSDDTTVKVWDFARCQEERSLT-----GHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGREL 305 (715)
Q Consensus 233 ~l~~spd~--~~Las~s~Dg~V~iwdl~~~~~~~~l~-----~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~ 305 (715)
++.|..++ ..+++++.|+.|.+--.........+. .....+.++++.|..+++++++.|..|+|||+.+++.+
T Consensus 552 svKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~ 631 (1080)
T KOG1408|consen 552 SVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQV 631 (1080)
T ss_pred EEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEecccccee
Confidence 99998877 678999999876643322211122222 12456889999999999999999999999999999999
Q ss_pred EEecc---CCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEE
Q 005096 306 CSFHG---HKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHW 382 (715)
Q Consensus 306 ~~~~~---~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iw 382 (715)
+.|++ |.+....+...|.|.||++.+.|++|.++|+.+++++....+|...|+.+.|.+ +-+.|++.+.||.|.||
T Consensus 632 k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~n-DCkHlISvsgDgCIFvW 710 (1080)
T KOG1408|consen 632 KSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLN-DCKHLISVSGDGCIFVW 710 (1080)
T ss_pred eeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecc-cchhheeecCCceEEEE
Confidence 99974 556788899999999999999999999999999999999999999999999999 78889999999999999
Q ss_pred EcCC
Q 005096 383 LVGH 386 (715)
Q Consensus 383 d~~~ 386 (715)
.+..
T Consensus 711 ~lp~ 714 (1080)
T KOG1408|consen 711 KLPL 714 (1080)
T ss_pred ECch
Confidence 8854
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-24 Score=238.40 Aligned_cols=341 Identities=18% Similarity=0.260 Sum_probs=265.5
Q ss_pred eeehhhheeeEEEEEeccCC-CccccccC-----chhhhc------Cccceee-cCCCC---CceeeeEEEEecCCCCcc
Q 005096 83 DYTSTVVRYMQIRMWQRDSR-DRTVLQAT-----PAAAID------MLPTVAY-TDNPS---TSFAAKFVHTSLNKNRCS 146 (715)
Q Consensus 83 ~~~~~~~~~~~irvW~~~~~-~~~~~~~~-----~~~~~~------~l~~~~~-~~~~~---~~~~~~~~~~~l~~H~~~ 146 (715)
+++.++.....+.+|+.... +...++.. ...... ++..+.. +..+. .++..+-+..++.++...
T Consensus 125 e~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~ 204 (910)
T KOG1539|consen 125 EHLIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITALLHPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSR 204 (910)
T ss_pred ceEEEEEccCcEEEEEeccccccccccceeeeccCCceeeEecchhheeeEEEeecCCcEEEEEeccCcEEEEecccccc
Confidence 45666677788899998773 22122211 111111 1111111 11111 122333455678889999
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEE-EEEeCCCcEEEEeCCCCceeeeec
Q 005096 147 INRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWM-VSGDDGGAIKYWQNNMNNVKANKS 225 (715)
Q Consensus 147 I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L-~tgs~dg~I~iwd~~~~~~~~~~~ 225 (715)
|+++.=+|-=+.+|.|..+|+|.|+|++..+.+.+++...+.|++++|..||+.+ ++|+..|.+.+||++..++...+.
T Consensus 205 IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~ 284 (910)
T KOG1539|consen 205 ITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTR 284 (910)
T ss_pred eeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeee
Confidence 9999999999999999999999999999999999999767999999999999755 677777999999984332221111
Q ss_pred -CC-----------------------------------------------------------------------------
Q 005096 226 -AH----------------------------------------------------------------------------- 227 (715)
Q Consensus 226 -~h----------------------------------------------------------------------------- 227 (715)
.|
T Consensus 285 nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~ 364 (910)
T KOG1539|consen 285 NAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSV 364 (910)
T ss_pred ccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhh
Confidence 11
Q ss_pred --------------------------------------------------------------------------------
Q 005096 228 -------------------------------------------------------------------------------- 227 (715)
Q Consensus 228 -------------------------------------------------------------------------------- 227 (715)
T Consensus 365 ~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~ 444 (910)
T KOG1539|consen 365 ISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRF 444 (910)
T ss_pred hHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccc
Confidence
Q ss_pred ---CCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEe---cccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 005096 228 ---KESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSL---TGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKS 301 (715)
Q Consensus 228 ---~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l---~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s 301 (715)
...+++++.+..|++.+.|+..|.|-+|++.++.....+ ..|...|+.++.+.-++.+++++.+|.+++||.++
T Consensus 445 ~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~ 524 (910)
T KOG1539|consen 445 KKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKK 524 (910)
T ss_pred cccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCC
Confidence 123455566666666667777777777777776666666 37889999999998899999999999999999998
Q ss_pred CceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEE
Q 005096 302 GRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFH 381 (715)
Q Consensus 302 ~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~i 381 (715)
...+..++ -...+.++.++.....++++..|-.|+++|..+.+.++.|.+|...|++++||+ ++++|++++.|++|++
T Consensus 525 k~l~~~l~-l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~-DgrWlisasmD~tIr~ 602 (910)
T KOG1539|consen 525 KVLKKSLR-LGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSP-DGRWLISASMDSTIRT 602 (910)
T ss_pred cceeeeec-cCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCC-CCcEEEEeecCCcEEE
Confidence 87776666 566789999999889999999999999999999999999999999999999999 9999999999999999
Q ss_pred EEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECC-CeEEEEec
Q 005096 382 WLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSND-HTTKFWCR 427 (715)
Q Consensus 382 wd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~D-g~I~iWdl 427 (715)
||+-+...+-.+.. +..++++.|+|+|.+|||+..| .-|++|.-
T Consensus 603 wDlpt~~lID~~~v--d~~~~sls~SPngD~LAT~Hvd~~gIylWsN 647 (910)
T KOG1539|consen 603 WDLPTGTLIDGLLV--DSPCTSLSFSPNGDFLATVHVDQNGIYLWSN 647 (910)
T ss_pred EeccCcceeeeEec--CCcceeeEECCCCCEEEEEEecCceEEEEEc
Confidence 99999887766654 6789999999999999999998 67999964
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-25 Score=232.19 Aligned_cols=252 Identities=23% Similarity=0.437 Sum_probs=210.9
Q ss_pred eEEEEecCCCCccEEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCc----------eEEEEeccCCCEEEEEEcCCC-CEE
Q 005096 134 KFVHTSLNKNRCSINRVLWTPTGR-RLITGSQSGEFTLWNGQSFN----------FEMILQAHDHAIRSMVWSHND-NWM 201 (715)
Q Consensus 134 ~~~~~~l~~H~~~I~~l~~spdg~-~Latgs~dg~I~Iwd~~~~~----------~~~~l~~h~~~V~~l~~spdg-~~L 201 (715)
++.....--|.+.|+.+.+-|... .||+.+..+.|+|||..+.. ...++.+|...-+.|+|+... -+|
T Consensus 114 ~v~i~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~L 193 (422)
T KOG0264|consen 114 KVEISQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTL 193 (422)
T ss_pred ceEEEEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeE
Confidence 444455567999999999999665 55677888999999966532 223788899888889999864 578
Q ss_pred EEEeCCCcEEEEeCCCCc-------eeeeecCCCCCeEEEEEec-CCCEEEEEECCCcEEEEECC--CCeeEEEecccCC
Q 005096 202 VSGDDGGAIKYWQNNMNN-------VKANKSAHKESVRDLSFCR-TDLKFCSCSDDTTVKVWDFA--RCQEERSLTGHGW 271 (715)
Q Consensus 202 ~tgs~dg~I~iwd~~~~~-------~~~~~~~h~~~I~~l~~sp-d~~~Las~s~Dg~V~iwdl~--~~~~~~~l~~~~~ 271 (715)
++++.|+.|++||+.... ....+.+|.+.|.+++|++ +...|+++++|+.+.|||++ +.+......+|..
T Consensus 194 ls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~ 273 (422)
T KOG0264|consen 194 LSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSA 273 (422)
T ss_pred eeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCC
Confidence 999999999999987543 3456789999999999998 45678999999999999999 5666677889999
Q ss_pred ceEEEEEcCCC-CEEEEEeCCCcEEEEECCCC-ceeEEeccCCCceEEEEEcCC-CCEEEEEECCCeEEEEECCCCe---
Q 005096 272 DVKSVDWHPTK-SLLVSGGKDSLVKLWDAKSG-RELCSFHGHKNMVLCVKWNQN-GNWVLTASKDQIIKLYDIRAMK--- 345 (715)
Q Consensus 272 ~I~si~~spdg-~~L~sgs~Dg~I~iwDl~s~-~~~~~~~~~~~~I~sl~~spd-g~~Lasgs~dg~I~iwDl~t~~--- 345 (715)
.|.|++|+|-+ .+||+|+.|++|++||+|+- +++.++.+|...|.+|.|+|+ ...|++++.|+.+.|||+....
T Consensus 274 ~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq 353 (422)
T KOG0264|consen 274 EVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQ 353 (422)
T ss_pred ceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEecccccccc
Confidence 99999999954 58889999999999999974 578889999999999999995 5678889999999999996532
Q ss_pred -----------EEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcC
Q 005096 346 -----------ELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVG 385 (715)
Q Consensus 346 -----------~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~ 385 (715)
.+..-.+|...|..+.|+|.....|++.++|+.+.||+..
T Consensus 354 ~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 354 SPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred ChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 2455668999999999999778889999999999999875
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.6e-25 Score=228.90 Aligned_cols=254 Identities=23% Similarity=0.335 Sum_probs=224.2
Q ss_pred EEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceee----e---e-----------cCCCCCeEEEEEecCC
Q 005096 179 EMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKA----N---K-----------SAHKESVRDLSFCRTD 240 (715)
Q Consensus 179 ~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~----~---~-----------~~h~~~I~~l~~spd~ 240 (715)
...+..|...|.+|++++|++++++++.+++|.-|++.+++... . + +.|...|.++++++|+
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg 214 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG 214 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence 55667899999999999999999999999999999987765321 1 0 2677889999999999
Q ss_pred CEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCceEEEEE
Q 005096 241 LKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKW 320 (715)
Q Consensus 241 ~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~ 320 (715)
++|++|+.|..|.|||..+.+.+..+.+|.+.|.+++|-...+.|++++.|..|++|+++....+.++.+|.+.|..|..
T Consensus 215 kylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~Ida 294 (479)
T KOG0299|consen 215 KYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDA 294 (479)
T ss_pred cEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeech
Confidence 99999999999999999999999999999999999999988889999999999999999988888899999999999999
Q ss_pred cCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccC--
Q 005096 321 NQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHD-- 398 (715)
Q Consensus 321 spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~-- 398 (715)
..-++.+-+|+.|+++++|++. .+....|.++.+.+-|++|- ++..|++|++||.|.+|++-+.+.+......|.
T Consensus 295 L~reR~vtVGgrDrT~rlwKi~-eesqlifrg~~~sidcv~~I--n~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~ 371 (479)
T KOG0299|consen 295 LSRERCVTVGGRDRTVRLWKIP-EESQLIFRGGEGSIDCVAFI--NDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVI 371 (479)
T ss_pred hcccceEEeccccceeEEEecc-ccceeeeeCCCCCeeeEEEe--cccceeeccCCceEEEeeecccCceeEeecccccc
Confidence 8888888888899999999994 55566778899999999998 688999999999999999988887776655542
Q ss_pred ---------CCEEEEEEcCCCCEEEEEECCCeEEEEecCCCCCccc
Q 005096 399 ---------NTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGDTAR 435 (715)
Q Consensus 399 ---------~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~~~~~ 435 (715)
..|++|+..+...++++|+.+|.|++|.++.......
T Consensus 372 ~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~ 417 (479)
T KOG0299|consen 372 PELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAIN 417 (479)
T ss_pred CCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccc
Confidence 2799999999999999999999999999977654333
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.8e-25 Score=211.54 Aligned_cols=237 Identities=18% Similarity=0.279 Sum_probs=211.7
Q ss_pred EEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCC
Q 005096 181 ILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARC 260 (715)
Q Consensus 181 ~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~ 260 (715)
.+.+|+..++.|.|+.+|++|++|+.|.++.||-...++.+.++.+|.+.|+|+++..+.+++++|+.|.++++||++++
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG 84 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG 84 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC
Confidence 46789999999999999999999999999999999899999999999999999999999999999999999999999999
Q ss_pred eeEEEecccCCceEEEEEcCCCCEEEEEeCC-----CcEEEEECC-------CCceeEEeccCCCceEEEEEcCCCCEEE
Q 005096 261 QEERSLTGHGWDVKSVDWHPTKSLLVSGGKD-----SLVKLWDAK-------SGRELCSFHGHKNMVLCVKWNQNGNWVL 328 (715)
Q Consensus 261 ~~~~~l~~~~~~I~si~~spdg~~L~sgs~D-----g~I~iwDl~-------s~~~~~~~~~~~~~I~sl~~spdg~~La 328 (715)
+.+..++ ....|+.+.|+.+|++++.+.++ +.|.++|++ +.+++.++..+.+.++.+.|.+-+++|+
T Consensus 85 k~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii 163 (327)
T KOG0643|consen 85 KQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETII 163 (327)
T ss_pred cEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEE
Confidence 9999987 66789999999999988877653 679999998 3455777777889999999999999999
Q ss_pred EEECCCeEEEEECCCCeE-EEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEc
Q 005096 329 TASKDQIIKLYDIRAMKE-LESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWH 407 (715)
Q Consensus 329 sgs~dg~I~iwDl~t~~~-~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s 407 (715)
+|.+||.|.+||+++++. +.+.+.|...|+.|.+++ +..++++++.|.+-++||+.+-..+..... +.+|++.+++
T Consensus 164 ~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~-d~T~FiT~s~Dttakl~D~~tl~v~Kty~t--e~PvN~aais 240 (327)
T KOG0643|consen 164 AGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSR-DRTYFITGSKDTTAKLVDVRTLEVLKTYTT--ERPVNTAAIS 240 (327)
T ss_pred EecCCCcEEEEEcccCceeeechhhhccccccccccC-CcceEEecccCccceeeeccceeeEEEeee--cccccceecc
Confidence 999999999999999854 566688999999999999 899999999999999999988776655553 6799999999
Q ss_pred CCCCEEEEEECCCe
Q 005096 408 PIGYLLCSGSNDHT 421 (715)
Q Consensus 408 pdg~~L~sgs~Dg~ 421 (715)
|....++.|+....
T Consensus 241 P~~d~VilgGGqeA 254 (327)
T KOG0643|consen 241 PLLDHVILGGGQEA 254 (327)
T ss_pred cccceEEecCCcee
Confidence 98777777765433
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4e-26 Score=248.27 Aligned_cols=284 Identities=20% Similarity=0.356 Sum_probs=231.7
Q ss_pred CccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC----ceEEEEecc---CCCEEEEEEcC-CCCEEEEEeCCCcEEEEeC
Q 005096 144 RCSINRVLWTPTGRRLITGSQSGEFTLWNGQSF----NFEMILQAH---DHAIRSMVWSH-NDNWMVSGDDGGAIKYWQN 215 (715)
Q Consensus 144 ~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~----~~~~~l~~h---~~~V~~l~~sp-dg~~L~tgs~dg~I~iwd~ 215 (715)
+..+++|+.+++-..|++++.. .++||.+... ++...++.. ...+..|.|.. +.++|||++..|.|.+||+
T Consensus 39 k~~~nAIs~nr~~~qiv~AGrs-~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdl 117 (839)
T KOG0269|consen 39 KAKANAISVNRDINQIVVAGRS-LLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDL 117 (839)
T ss_pred ccccceEeecCCcceeEEeccc-ceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEec
Confidence 3456778888888888888765 4777765432 122221111 12355678864 4689999999999999999
Q ss_pred CC---CceeeeecCCCCCeEEEEEecCC-CEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcC-CCCEEEEEeC
Q 005096 216 NM---NNVKANKSAHKESVRDLSFCRTD-LKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHP-TKSLLVSGGK 290 (715)
Q Consensus 216 ~~---~~~~~~~~~h~~~I~~l~~spd~-~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~sp-dg~~L~sgs~ 290 (715)
.. .+.+..+..|+..|.+++|+... ++|++|+.||+|++||++..+...++.+....|++|.|+| .+++|+++.+
T Consensus 118 nk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~d 197 (839)
T KOG0269|consen 118 NKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHD 197 (839)
T ss_pred CccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecC
Confidence 88 56677888999999999999854 7789999999999999999999999998899999999998 4678999999
Q ss_pred CCcEEEEECCC-CceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEee-cCCCCeEEEEEccCCCC
Q 005096 291 DSLVKLWDAKS-GRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFR-GHRKDVTALAWHPFHEE 368 (715)
Q Consensus 291 Dg~I~iwDl~s-~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~-~h~~~V~~l~~sp~~~~ 368 (715)
.|.|.+||+|. .++...+..|.+.|.|+.|+|++.|||+|+.|+.|+|||+.+.+...... .....|.+|+|-|....
T Consensus 198 sG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~ 277 (839)
T KOG0269|consen 198 SGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSY 277 (839)
T ss_pred CceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccc
Confidence 99999999996 45677888999999999999999999999999999999998655433333 24568999999998888
Q ss_pred EEEEEe--CCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcC-CCCEEEEEECCCeEEEEecC
Q 005096 369 YFVSGS--LDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHP-IGYLLCSGSNDHTTKFWCRN 428 (715)
Q Consensus 369 ~l~sgs--~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~L~sgs~Dg~I~iWdl~ 428 (715)
.|++++ .|-.|+|||++........+..|...++.++|.. |...|.+++.||+|..-.++
T Consensus 278 hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~k 340 (839)
T KOG0269|consen 278 HLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFK 340 (839)
T ss_pred hhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHHHhhhh
Confidence 888886 4668999999999998899999999999999976 45678888888887665443
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.7e-23 Score=217.88 Aligned_cols=360 Identities=18% Similarity=0.295 Sum_probs=262.5
Q ss_pred CCCCCCCcccchhhhhcccccccceEeeeh---hhheeeEEEEEeccCCCccccccCchhhhcCccceeecCCCCCceee
Q 005096 57 SNPPYDAHGDSFAAKRMRKLTQRRAVDYTS---TVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSFAA 133 (715)
Q Consensus 57 ~~~~~~~h~~~~~~~r~~~~~~~~~~~~~~---~~~~~~~irvW~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 133 (715)
.++.|.+|++.+.+..+.....+.+..-.. .......+|+|+...-..-.... .....+.+++|+.....+...
T Consensus 96 ~Qr~y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~TL~V~g---~f~~GV~~vaFsk~~~G~~l~ 172 (626)
T KOG2106|consen 96 SQRHYLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLSTLHVIG---FFDRGVTCVAFSKINGGSLLC 172 (626)
T ss_pred hcccccCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeecccccceeeeeec---cccccceeeeecccCCCceEE
Confidence 578899999998776665433333321111 11223578999833221111111 112223333333332222211
Q ss_pred -----------------eEEEEecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEE---EeccC-CCEEEE
Q 005096 134 -----------------KFVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMI---LQAHD-HAIRSM 192 (715)
Q Consensus 134 -----------------~~~~~~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~---l~~h~-~~V~~l 192 (715)
+......+..++.|..+.|+|.+..|++.+..|.+..|+.+.+.+.+. ++.++ ..|.|+
T Consensus 173 ~vD~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v 252 (626)
T KOG2106|consen 173 AVDDSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCV 252 (626)
T ss_pred EecCCCccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEE
Confidence 111112333456788999999888788777788999999998776655 33332 569999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCee----------
Q 005096 193 VWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQE---------- 262 (715)
Q Consensus 193 ~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~---------- 262 (715)
+|.++|+ ++||+.+|.|.||+..+.........|.+.|.+++...+|.+|- |+.|..|..||-+-.+.
T Consensus 253 ~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~y~k~r~~elPe~~G 330 (626)
T KOG2106|consen 253 TFLENGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDNYRKLRETELPEQFG 330 (626)
T ss_pred EEcCCCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEee-cCccceEEeccccccccccccCchhcC
Confidence 9999886 67899999999999988887777779999999999999987555 99999999998311000
Q ss_pred ------------------------------EEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCC
Q 005096 263 ------------------------------ERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHK 312 (715)
Q Consensus 263 ------------------------------~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~ 312 (715)
.....+|......++.+++.+.|++++.|+.++||+ ..+.+.+.. ..
T Consensus 331 ~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~-~~ 407 (626)
T KOG2106|consen 331 PIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKI-IE 407 (626)
T ss_pred CeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEE-ec
Confidence 011235677888999999999999999999999999 444444433 46
Q ss_pred CceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEE
Q 005096 313 NMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVE 392 (715)
Q Consensus 313 ~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~ 392 (715)
..+.|+.|+|.| .||+|+..|...+.|.++...+..-.. ...+++++|++ ++.+||.|+.|+.|+||.++.......
T Consensus 408 d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp-~G~~lAvgs~d~~iyiy~Vs~~g~~y~ 484 (626)
T KOG2106|consen 408 DPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSP-DGAFLAVGSHDNHIYIYRVSANGRKYS 484 (626)
T ss_pred CceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcC-CCCEEEEecCCCeEEEEEECCCCcEEE
Confidence 778999999999 999999999999999998555555444 89999999999 899999999999999999977665544
Q ss_pred Ee-eccCCCEEEEEEcCCCCEEEEEECCCeEEEEec
Q 005096 393 IH-NVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCR 427 (715)
Q Consensus 393 ~~-~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl 427 (715)
.. ..+...|+.|.|+.|+++|.+-+.|-.|.+|+-
T Consensus 485 r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~ 520 (626)
T KOG2106|consen 485 RVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKP 520 (626)
T ss_pred EeeeecCceeEEeeecCCCceEEeccCceEEEEEcc
Confidence 33 334578999999999999999999999999944
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.7e-24 Score=230.35 Aligned_cols=281 Identities=20% Similarity=0.329 Sum_probs=238.9
Q ss_pred CccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC-ceEEEEecc-CCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcee
Q 005096 144 RCSINRVLWTPTGRRLITGSQSGEFTLWNGQSF-NFEMILQAH-DHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVK 221 (715)
Q Consensus 144 ~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~-~~~~~l~~h-~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~ 221 (715)
-..|+|++|+.+.+.||++-.||.|.||++... -+...+.++ +..|.+++|+ ++..|++.+.+|.|.-||+.+.+.+
T Consensus 25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~lk~~ 103 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTLKQK 103 (691)
T ss_pred ccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEecccCcee
Confidence 467999999999999999999999999998763 445556655 4679999999 6677889999999999999999999
Q ss_pred eeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeE--EEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 005096 222 ANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEE--RSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDA 299 (715)
Q Consensus 222 ~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~--~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl 299 (715)
..+....+.|++++.++.+..++++++||.++++++..++.. +.+...++.|.+++|++++..|++|+.||.|++||+
T Consensus 104 ~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~ 183 (691)
T KOG2048|consen 104 YNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDV 183 (691)
T ss_pred EEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEc
Confidence 999999999999999999999999999998888888776654 345556789999999999999999999999999999
Q ss_pred CCCceeEEec-------c-CCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEE
Q 005096 300 KSGRELCSFH-------G-HKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFV 371 (715)
Q Consensus 300 ~s~~~~~~~~-------~-~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~ 371 (715)
.++..+.... . ...-|+++.|..+ ..|++|...|+|.+||...+..+..++.|...|.+++... +++.++
T Consensus 184 ~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~-~~d~vf 261 (691)
T KOG2048|consen 184 KSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVAD-NEDRVF 261 (691)
T ss_pred CCCceEEEeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcC-CCCeEE
Confidence 9988776321 1 2334778888755 4699999999999999999999999999999999999998 889999
Q ss_pred EEeCCCcEEEEEcCCCCc---eEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCC
Q 005096 372 SGSLDGSIFHWLVGHETP---QVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNR 429 (715)
Q Consensus 372 sgs~DG~I~iwd~~~~~~---~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~ 429 (715)
+++.|+.|..|...+.+. .......|...|.+++...+ .|++|+.|..+.+-....
T Consensus 262 saGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~ 320 (691)
T KOG2048|consen 262 SAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSRE 320 (691)
T ss_pred EccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEEccccc
Confidence 999999999998877654 22334557888999998866 899999999988876544
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.9e-25 Score=214.02 Aligned_cols=254 Identities=21% Similarity=0.388 Sum_probs=211.5
Q ss_pred EEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC---ceeeeecCCCCCeEEEEEec--CCCEEEEEECCCcEEEE
Q 005096 181 ILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN---NVKANKSAHKESVRDLSFCR--TDLKFCSCSDDTTVKVW 255 (715)
Q Consensus 181 ~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~---~~~~~~~~h~~~I~~l~~sp--d~~~Las~s~Dg~V~iw 255 (715)
+-..|++.|.++...--|++|+|++.|++|+|+.++.+ .++..+.+|.++|..++|.. -|.+||+|+.||.|.||
T Consensus 6 idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiW 85 (299)
T KOG1332|consen 6 IDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIW 85 (299)
T ss_pred hhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEE
Confidence 34568888999888888999999999999999998764 56788999999999999986 78999999999999999
Q ss_pred ECCCCe--eEEEecccCCceEEEEEcCCC--CEEEEEeCCCcEEEEECCCC---ceeEEeccCCCceEEEEEcCC---C-
Q 005096 256 DFARCQ--EERSLTGHGWDVKSVDWHPTK--SLLVSGGKDSLVKLWDAKSG---RELCSFHGHKNMVLCVKWNQN---G- 324 (715)
Q Consensus 256 dl~~~~--~~~~l~~~~~~I~si~~spdg--~~L~sgs~Dg~I~iwDl~s~---~~~~~~~~~~~~I~sl~~spd---g- 324 (715)
.-+++. .......|...|++|+|-|.+ -.|++++.||.|.|.++++. ...+....|.-.|++++|.|. |
T Consensus 86 ke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~ 165 (299)
T KOG1332|consen 86 KEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGS 165 (299)
T ss_pred ecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCcc
Confidence 987663 344566799999999998864 58999999999999988754 223345678889999999985 4
Q ss_pred ----------CEEEEEECCCeEEEEECCCCe--EEEEeecCCCCeEEEEEccCC---CCEEEEEeCCCcEEEEEcCCCCc
Q 005096 325 ----------NWVLTASKDQIIKLYDIRAMK--ELESFRGHRKDVTALAWHPFH---EEYFVSGSLDGSIFHWLVGHETP 389 (715)
Q Consensus 325 ----------~~Lasgs~dg~I~iwDl~t~~--~~~~~~~h~~~V~~l~~sp~~---~~~l~sgs~DG~I~iwd~~~~~~ 389 (715)
+.|++|+.|..|+||+..+++ .-.++.+|...|+.++|.|.. ...|++++.||+|.||..+.+..
T Consensus 166 ~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e 245 (299)
T KOG1332|consen 166 LVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYE 245 (299)
T ss_pred ccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccC
Confidence 569999999999999998753 345588999999999999954 35899999999999998875433
Q ss_pred e--EEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCCCCCcc
Q 005096 390 Q--VEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGDTA 434 (715)
Q Consensus 390 ~--~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~~~~ 434 (715)
. ..++......++.+.|+..|++|++++.|+.|.+|.-+..++..
T Consensus 246 ~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~~Gkw~ 292 (299)
T KOG1332|consen 246 PWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENVDGKWE 292 (299)
T ss_pred cccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCCCCcEE
Confidence 2 33444466789999999999999999999999999877665543
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.6e-25 Score=219.05 Aligned_cols=297 Identities=20% Similarity=0.315 Sum_probs=233.7
Q ss_pred ccccccceEeeehhhheeeEEEEEeccCCCccccccCchhhhcCccceeecCCCCCceeeeEEEEecCCCCccEEEEEEc
Q 005096 74 RKLTQRRAVDYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSFAAKFVHTSLNKNRCSINRVLWT 153 (715)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~irvW~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~~l~~s 153 (715)
|.+....+..+.++...+..|++.+..+-- ... ...++... .. ...--+.++|-.|.+.|+++.|+
T Consensus 116 R~aafs~DG~lvATGsaD~SIKildverml---aks---~~~em~~~-------~~-qa~hPvIRTlYDH~devn~l~FH 181 (430)
T KOG0640|consen 116 RAAAFSPDGSLVATGSADASIKILDVERML---AKS---KPKEMISG-------DT-QARHPVIRTLYDHVDEVNDLDFH 181 (430)
T ss_pred eeeeeCCCCcEEEccCCcceEEEeehhhhh---hhc---chhhhccC-------Cc-ccCCceEeehhhccCcccceeec
Confidence 334444566677888889999998765321 100 11111110 00 01113456788999999999999
Q ss_pred CCCCEEEEEeCCCeEEEEeCCCCceEEEEe--ccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeee---cCCC
Q 005096 154 PTGRRLITGSQSGEFTLWNGQSFNFEMILQ--AHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANK---SAHK 228 (715)
Q Consensus 154 pdg~~Latgs~dg~I~Iwd~~~~~~~~~l~--~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~---~~h~ 228 (715)
|....|++|+.|++|++||..+-...+.++ .....|.+|.|+|.|++|++|..-.++++||+++..+.... ..|.
T Consensus 182 Pre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht 261 (430)
T KOG0640|consen 182 PRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHT 261 (430)
T ss_pred chhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccc
Confidence 999999999999999999987643333322 23567999999999999999999999999999987765443 4688
Q ss_pred CCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecc-c-CCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeE
Q 005096 229 ESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTG-H-GWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELC 306 (715)
Q Consensus 229 ~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~-~-~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~ 306 (715)
+.|+++.+++.+++.++++.||.|+|||--+.+++.++.. | +..|.+..|..++++|++.+.|..+++|.+.+++.+.
T Consensus 262 ~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~ 341 (430)
T KOG0640|consen 262 GAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLK 341 (430)
T ss_pred cceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEE
Confidence 9999999999999999999999999999988888888753 4 4579999999999999999999999999999999999
Q ss_pred EeccCC-----CceEEEEEcCCCCEEEEEE-CCCeEEEEECCCCeEEEEee-cCCCCeEEEEEccCCCCEEEEEeCCCcE
Q 005096 307 SFHGHK-----NMVLCVKWNQNGNWVLTAS-KDQIIKLYDIRAMKELESFR-GHRKDVTALAWHPFHEEYFVSGSLDGSI 379 (715)
Q Consensus 307 ~~~~~~-----~~I~sl~~spdg~~Lasgs-~dg~I~iwDl~t~~~~~~~~-~h~~~V~~l~~sp~~~~~l~sgs~DG~I 379 (715)
++.+-. .--+...|+....|++.-. ..+.+.-||.|+...+..+. +|++.+..+.-+| .+..+++|+.|-++
T Consensus 342 ~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP-~~p~FmTcsdD~ra 420 (430)
T KOG0640|consen 342 EYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSP-VEPAFMTCSDDFRA 420 (430)
T ss_pred EEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCC-CCCceeeeccccee
Confidence 887531 1234566887888887765 35689999999987766654 7999999999999 88999999999999
Q ss_pred EEEEcC
Q 005096 380 FHWLVG 385 (715)
Q Consensus 380 ~iwd~~ 385 (715)
++|--+
T Consensus 421 RFWyrr 426 (430)
T KOG0640|consen 421 RFWYRR 426 (430)
T ss_pred eeeeec
Confidence 999653
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.2e-24 Score=222.90 Aligned_cols=283 Identities=13% Similarity=0.166 Sum_probs=234.0
Q ss_pred CccEEEEEEcCCCCEEEEEeCCCeEEEEeCC--CCceEEEEeccCCCEEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCce
Q 005096 144 RCSINRVLWTPTGRRLITGSQSGEFTLWNGQ--SFNFEMILQAHDHAIRSMVWSHNDN-WMVSGDDGGAIKYWQNNMNNV 220 (715)
Q Consensus 144 ~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~--~~~~~~~l~~h~~~V~~l~~spdg~-~L~tgs~dg~I~iwd~~~~~~ 220 (715)
.+.|++|.|+|....|++++.|++++||.++ +...+..+......|.+++|.++|. .+++++....+++||+++.++
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~ 292 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV 292 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence 4689999999999999999999999999765 4456677777788999999999998 889999999999999988765
Q ss_pred eeee--cCC-CCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEE
Q 005096 221 KANK--SAH-KESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLW 297 (715)
Q Consensus 221 ~~~~--~~h-~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iw 297 (715)
.... .++ ...+..+.+++++++|++.+..|.|.+....+++.+..++ ..+.|.+++|+.|++.|++++.+|.|.+|
T Consensus 293 ~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~GeV~v~ 371 (514)
T KOG2055|consen 293 TKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSSDSKELLASGGTGEVYVW 371 (514)
T ss_pred ccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEecCCcEEEEEcCCceEEEE
Confidence 4332 222 3467788899999999999999999999999988888887 56789999999999999999999999999
Q ss_pred ECCCCceeEEeccCCC-ceEEEEEcCCCCEEEEEECCCeEEEEECCC------CeEEEEeecCCCCeEEEEEccCCCCEE
Q 005096 298 DAKSGRELCSFHGHKN-MVLCVKWNQNGNWVLTASKDQIIKLYDIRA------MKELESFRGHRKDVTALAWHPFHEEYF 370 (715)
Q Consensus 298 Dl~s~~~~~~~~~~~~-~I~sl~~spdg~~Lasgs~dg~I~iwDl~t------~~~~~~~~~h~~~V~~l~~sp~~~~~l 370 (715)
|++...+++++....+ .-++++.+.++.|||+|+..|.|.|||..+ -+.+..+..-...|+++.|++ +..+|
T Consensus 372 nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~-d~qiL 450 (514)
T KOG2055|consen 372 NLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNH-DAQIL 450 (514)
T ss_pred ecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCc-chhhh
Confidence 9999999998863322 246778889999999999999999999754 345667777778899999999 78888
Q ss_pred EEEeC--CCcEEEEEcCCCCceEEEe--eccCCCEEEEEEcCCCCEEEEEECCCeEEEEecC
Q 005096 371 VSGSL--DGSIFHWLVGHETPQVEIH--NVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRN 428 (715)
Q Consensus 371 ~sgs~--DG~I~iwd~~~~~~~~~~~--~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~ 428 (715)
|.+|. +..+++-.+-+-.....+. ...-+.|+|++|+|.+.+||.|..+|.|.+|.+.
T Consensus 451 AiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 451 AIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred hhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 87764 5578887775433222211 2234579999999999999999999999999875
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.9e-25 Score=210.16 Aligned_cols=250 Identities=21% Similarity=0.348 Sum_probs=209.2
Q ss_pred ecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC---ceEEEEeccCCCEEEEEEcC--CCCEEEEEeCCCcEEEE
Q 005096 139 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSF---NFEMILQAHDHAIRSMVWSH--NDNWMVSGDDGGAIKYW 213 (715)
Q Consensus 139 ~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~---~~~~~l~~h~~~V~~l~~sp--dg~~L~tgs~dg~I~iw 213 (715)
.-..|++.|..+...-.|++|||+++|++|+|+..++. +.+.++.+|.+.|..++|.. -|++|++++.||.|.||
T Consensus 6 idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiW 85 (299)
T KOG1332|consen 6 IDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIW 85 (299)
T ss_pred hhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEE
Confidence 34579999999999999999999999999999997763 57889999999999999986 68999999999999999
Q ss_pred eCCCCc--eeeeecCCCCCeEEEEEecC--CCEEEEEECCCcEEEEECCCC---eeEEEecccCCceEEEEEcCC---C-
Q 005096 214 QNNMNN--VKANKSAHKESVRDLSFCRT--DLKFCSCSDDTTVKVWDFARC---QEERSLTGHGWDVKSVDWHPT---K- 282 (715)
Q Consensus 214 d~~~~~--~~~~~~~h~~~I~~l~~spd--~~~Las~s~Dg~V~iwdl~~~---~~~~~l~~~~~~I~si~~spd---g- 282 (715)
.-+.+. .......|...|++++|.|. +-.|++++.||+|.|+++++. ...+....|.-.|++++|.|. |
T Consensus 86 ke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~ 165 (299)
T KOG1332|consen 86 KEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGS 165 (299)
T ss_pred ecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCcc
Confidence 988773 33445679999999999885 467899999999999998654 334556789999999999985 3
Q ss_pred ----------CEEEEEeCCCcEEEEECCCC--ceeEEeccCCCceEEEEEcCCC----CEEEEEECCCeEEEEECCCCeE
Q 005096 283 ----------SLLVSGGKDSLVKLWDAKSG--RELCSFHGHKNMVLCVKWNQNG----NWVLTASKDQIIKLYDIRAMKE 346 (715)
Q Consensus 283 ----------~~L~sgs~Dg~I~iwDl~s~--~~~~~~~~~~~~I~sl~~spdg----~~Lasgs~dg~I~iwDl~t~~~ 346 (715)
+.|++|+.|+.|+||+..++ +..+++.+|.+.|+.++|.|.- .+|++++.||+|.||..+....
T Consensus 166 ~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e 245 (299)
T KOG1332|consen 166 LVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYE 245 (299)
T ss_pred ccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccC
Confidence 57999999999999998875 3445688999999999999953 5799999999999998763211
Q ss_pred ---EEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCc
Q 005096 347 ---LESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETP 389 (715)
Q Consensus 347 ---~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~ 389 (715)
...++.....+..+.|+. .+++|++++.|+.|.+|.-+...+
T Consensus 246 ~wk~tll~~f~~~~w~vSWS~-sGn~LaVs~GdNkvtlwke~~~Gk 290 (299)
T KOG1332|consen 246 PWKKTLLEEFPDVVWRVSWSL-SGNILAVSGGDNKVTLWKENVDGK 290 (299)
T ss_pred cccccccccCCcceEEEEEec-cccEEEEecCCcEEEEEEeCCCCc
Confidence 233445667899999999 899999999999999997655443
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.8e-24 Score=232.96 Aligned_cols=261 Identities=16% Similarity=0.311 Sum_probs=222.5
Q ss_pred eehhhheeeEEEEEeccCCCccccccCchhhhcCccceeecCCCCCceeeeEEEEecCCCCccEEE-EEEcC-CCCEEEE
Q 005096 84 YTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSFAAKFVHTSLNKNRCSINR-VLWTP-TGRRLIT 161 (715)
Q Consensus 84 ~~~~~~~~~~irvW~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~~-l~~sp-dg~~Lat 161 (715)
...+..|++++++|+...... + -.+.+.+|.+-|.+ +++-. ++-+|++
T Consensus 27 ~i~s~sRd~t~~vw~~~~~~~-------------l-----------------~~~~~~~~~g~i~~~i~y~e~~~~~l~~ 76 (745)
T KOG0301|consen 27 CIISGSRDGTVKVWAKKGKQY-------------L-----------------ETHAFEGPKGFIANSICYAESDKGRLVV 76 (745)
T ss_pred EEeecCCCCceeeeeccCccc-------------c-----------------cceecccCcceeeccceeccccCcceEe
Confidence 566778899999997643331 1 12346677787877 88875 5556999
Q ss_pred EeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCC
Q 005096 162 GSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDL 241 (715)
Q Consensus 162 gs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~ 241 (715)
|+.|.+|.||.....+...++++|...|.|+....++. |++|+.|.+++||... ++...+.+|...|++++..+++
T Consensus 77 g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~--~l~~~l~gH~asVWAv~~l~e~- 152 (745)
T KOG0301|consen 77 GGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIG--ELVYSLQGHTASVWAVASLPEN- 152 (745)
T ss_pred ecccceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecch--hhhcccCCcchheeeeeecCCC-
Confidence 99999999999999999999999999999999887776 9999999999999654 4555689999999999999887
Q ss_pred EEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCceEEEEEc
Q 005096 242 KFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWN 321 (715)
Q Consensus 242 ~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~s 321 (715)
.+++|+.|.+|++|.- ++.+++|.+|.+.|+.+++-+++ .|++++.||.|++||+ +++++.++.+|.+-|.+++..
T Consensus 153 ~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~ 228 (745)
T KOG0301|consen 153 TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMA 228 (745)
T ss_pred cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCC-CeEeecCCceEEEEec-cCceeeeeeccceEEEEEEec
Confidence 8999999999999985 67899999999999999999664 5889999999999999 689999999999999999988
Q ss_pred CCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCC
Q 005096 322 QNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGH 386 (715)
Q Consensus 322 pdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~ 386 (715)
.++..|+++++|++++||+.. ++...+......|.++++-. +++ |++|+.||.|+||..+.
T Consensus 229 ~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~-NgD-Ivvg~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 229 LSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLL-NGD-IVVGGSDGRVRVFTVDK 289 (745)
T ss_pred CCCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEee-CCC-EEEeccCceEEEEEecc
Confidence 888999999999999999976 77777776677899998876 444 67788899999998864
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.8e-24 Score=222.77 Aligned_cols=262 Identities=19% Similarity=0.254 Sum_probs=219.0
Q ss_pred CeEEEEeCCCCceEEEEecc-CCCEEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEE
Q 005096 166 GEFTLWNGQSFNFEMILQAH-DHAIRSMVWSHNDNWMVSGD-DGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKF 243 (715)
Q Consensus 166 g~I~Iwd~~~~~~~~~l~~h-~~~V~~l~~spdg~~L~tgs-~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~L 243 (715)
.++.+||+.++.....+++. ...-.++..- ++++++++. ....|.+|.+.............+.|.+++-+++|.+|
T Consensus 18 ~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l 96 (476)
T KOG0646|consen 18 INCIVWDLRTGTSLLQYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFL 96 (476)
T ss_pred cceeEEecCCCceeEEecCcccccchhhhhh-chhheeeecccCccccccccCchhhhhhhcccccceeeeecCCCceEE
Confidence 45999999999998888875 2222222222 335666554 34578999988766555555667889999999999999
Q ss_pred EEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECC---------CCceeEEeccCCCc
Q 005096 244 CSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAK---------SGRELCSFHGHKNM 314 (715)
Q Consensus 244 as~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~---------s~~~~~~~~~~~~~ 314 (715)
+.++..+.|++|.+.++..+..+.+|...|+|+.|+-|+.+|++|+.||.|.+|++. +-+.+..|..|.-.
T Consensus 97 ~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~Htls 176 (476)
T KOG0646|consen 97 LAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLS 176 (476)
T ss_pred EeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcce
Confidence 999999999999999999999999999999999999999999999999999999763 24567889999999
Q ss_pred eEEEEEcCC--CCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCC----
Q 005096 315 VLCVKWNQN--GNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHET---- 388 (715)
Q Consensus 315 I~sl~~spd--g~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~---- 388 (715)
|+.+..... ..+|++++.|.++++||+..+..+.++. ....+.+++++| .+..+++|+.+|.|.+.++....
T Consensus 177 ITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~-fp~si~av~lDp-ae~~~yiGt~~G~I~~~~~~~~~~~~~ 254 (476)
T KOG0646|consen 177 ITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT-FPSSIKAVALDP-AERVVYIGTEEGKIFQNLLFKLSGQSA 254 (476)
T ss_pred eEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe-cCCcceeEEEcc-cccEEEecCCcceEEeeehhcCCcccc
Confidence 999988764 3689999999999999999999888876 678899999999 89999999999999998874432
Q ss_pred -----------ceEEEeeccCC--CEEEEEEcCCCCEEEEEECCCeEEEEecCCC
Q 005096 389 -----------PQVEIHNVHDN--TVWDLAWHPIGYLLCSGSNDHTTKFWCRNRP 430 (715)
Q Consensus 389 -----------~~~~~~~~h~~--~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~ 430 (715)
..+..+.+|.+ .|+|++++-||.+|++|+.||.|+|||+...
T Consensus 255 ~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~ 309 (476)
T KOG0646|consen 255 GVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSK 309 (476)
T ss_pred cccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchH
Confidence 22345567877 9999999999999999999999999998653
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.4e-24 Score=231.44 Aligned_cols=283 Identities=22% Similarity=0.319 Sum_probs=234.6
Q ss_pred EEEEEEcCC--CCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeee
Q 005096 147 INRVLWTPT--GRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANK 224 (715)
Q Consensus 147 I~~l~~spd--g~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~ 224 (715)
|++|. +|. =+.|+.|+.+|.+.|||+++++.+.++.++...|+++.=+|-=+.+++|..+|+|.|+++..++.+..+
T Consensus 162 Ital~-HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sF 240 (910)
T KOG1539|consen 162 ITALL-HPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSF 240 (910)
T ss_pred eeeEe-cchhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEE
Confidence 66664 443 357899999999999999999999999999999999999998899999999999999999999999999
Q ss_pred cCCCCCeEEEEEecCCCE-EEEEECCCcEEEEECCCCeeEEEec-ccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCC-
Q 005096 225 SAHKESVRDLSFCRTDLK-FCSCSDDTTVKVWDFARCQEERSLT-GHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKS- 301 (715)
Q Consensus 225 ~~h~~~I~~l~~spd~~~-Las~s~Dg~V~iwdl~~~~~~~~l~-~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s- 301 (715)
+...+.|+.++|..||+. +++++..|.+.+||++..+....+. .|.+.|..+.|.+....|++++.|+.+++|=.++
T Consensus 241 k~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~ 320 (910)
T KOG1539|consen 241 KQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSG 320 (910)
T ss_pred EccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCC
Confidence 877799999999999976 5667777999999999888777665 6778888888888888888888888777762221
Q ss_pred -C--ce-------------eEEe---------------------------------------------------------
Q 005096 302 -G--RE-------------LCSF--------------------------------------------------------- 308 (715)
Q Consensus 302 -~--~~-------------~~~~--------------------------------------------------------- 308 (715)
| +. ++-+
T Consensus 321 dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~ 400 (910)
T KOG1539|consen 321 DGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVE 400 (910)
T ss_pred CCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCccee
Confidence 1 00 0000
Q ss_pred -c-------------------------------------c------CCCceEEEEEcCCCCEEEEEECCCeEEEEECCCC
Q 005096 309 -H-------------------------------------G------HKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAM 344 (715)
Q Consensus 309 -~-------------------------------------~------~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~ 344 (715)
. . ....+++++.+..|++.+.|+..|.|.+|++.+|
T Consensus 401 fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSG 480 (910)
T KOG1539|consen 401 FAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSG 480 (910)
T ss_pred eecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccC
Confidence 0 0 0134778889999999999999999999999999
Q ss_pred eEEEEe---ecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCc--------------------------------
Q 005096 345 KELESF---RGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETP-------------------------------- 389 (715)
Q Consensus 345 ~~~~~~---~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~-------------------------------- 389 (715)
-...+| ..|++.|++++..- -++.+++++.+|.+++||+++...
T Consensus 481 i~r~sf~~~~ah~~~V~gla~D~-~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~ 559 (910)
T KOG1539|consen 481 IHRKSFGDSPAHKGEVTGLAVDG-TNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIR 559 (910)
T ss_pred eeecccccCccccCceeEEEecC-CCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEE
Confidence 999888 58999999999986 678899999999999999976431
Q ss_pred --------eEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCCCC
Q 005096 390 --------QVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPG 431 (715)
Q Consensus 390 --------~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~ 431 (715)
+.+.+.+|.+.|++++||+||++|++++.|++|++||+-...
T Consensus 560 vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~ 609 (910)
T KOG1539|consen 560 VVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGT 609 (910)
T ss_pred EEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcc
Confidence 112234588999999999999999999999999999996543
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.9e-24 Score=213.38 Aligned_cols=264 Identities=20% Similarity=0.355 Sum_probs=229.0
Q ss_pred EEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEe
Q 005096 158 RLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFC 237 (715)
Q Consensus 158 ~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~s 237 (715)
.|++.-.+++++ ..+++.+.+|...|..++.......+.+++.|.+.+||.++++.++..+.+|.+.|++|+|+
T Consensus 126 rivssFk~~t~~------~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh 199 (481)
T KOG0300|consen 126 RIVSSFKDGTVK------FRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFH 199 (481)
T ss_pred hheeeecCCcee------EeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEec
Confidence 355555555532 24677788999999999988777888999999999999999999999999999999999999
Q ss_pred cCCCEEEEEECCCcEEEEECC------C----------------------------------CeeEEEecccCCceEEEE
Q 005096 238 RTDLKFCSCSDDTTVKVWDFA------R----------------------------------CQEERSLTGHGWDVKSVD 277 (715)
Q Consensus 238 pd~~~Las~s~Dg~V~iwdl~------~----------------------------------~~~~~~l~~~~~~I~si~ 277 (715)
+.+.++++++.|++-.||... . ...+..+.+|...|.+..
T Consensus 200 ~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~d 279 (481)
T KOG0300|consen 200 NSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACD 279 (481)
T ss_pred cccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehh
Confidence 999999999999999999620 0 011345678888899999
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCC-CeEEEEeecCCCC
Q 005096 278 WHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRA-MKELESFRGHRKD 356 (715)
Q Consensus 278 ~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t-~~~~~~~~~h~~~ 356 (715)
|...++.+++++.|.+..+||+++++.+..+.+|....+.++-+|..+++++.+.|-+.++||++. -..+..|.+|...
T Consensus 280 WL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdt 359 (481)
T KOG0300|consen 280 WLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDT 359 (481)
T ss_pred hhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999984 3457889999999
Q ss_pred eEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCCC
Q 005096 357 VTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRP 430 (715)
Q Consensus 357 V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~ 430 (715)
|+++.|.- +..+++|++|.+|+|||+++-...+..+. .++.++.++.+..+.+|+.--++..|++||++-.
T Consensus 360 VTS~vF~~--dd~vVSgSDDrTvKvWdLrNMRsplATIR-tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~ 430 (481)
T KOG0300|consen 360 VTSVVFNT--DDRVVSGSDDRTVKVWDLRNMRSPLATIR-TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGN 430 (481)
T ss_pred eeEEEEec--CCceeecCCCceEEEeeeccccCcceeee-cCCccceeEeecCCceEEeccCCceEEEEecCCC
Confidence 99999985 67789999999999999987766555554 4779999999988889999999999999999753
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.5e-26 Score=246.84 Aligned_cols=256 Identities=24% Similarity=0.479 Sum_probs=227.8
Q ss_pred CEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEE
Q 005096 157 RRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSF 236 (715)
Q Consensus 157 ~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~ 236 (715)
.+++....+-.++|||... +..|...|.++..-..++.+++|+.|..+-+|.+..-..+..+.+|...|.+|.|
T Consensus 5 ~~~m~~~~~t~Lr~~~~~~------~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f 78 (825)
T KOG0267|consen 5 EFLMKTKRATKLRVWDTRE------FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTF 78 (825)
T ss_pred cccceeeeeeccccccchh------hhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeec
Confidence 3445555566688887653 4467788888888777889999999999999998887777788999999999999
Q ss_pred ecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCceE
Q 005096 237 CRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVL 316 (715)
Q Consensus 237 spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~ 316 (715)
+.+..+|++|+.+|+|++||+++.+.++++.+|...+.++.|+|-+.+++.++.|+.+++||++...|...+++|...+.
T Consensus 79 ~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~ 158 (825)
T KOG0267|consen 79 DTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVD 158 (825)
T ss_pred CcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999899999999999999
Q ss_pred EEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeec
Q 005096 317 CVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNV 396 (715)
Q Consensus 317 sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~ 396 (715)
++.|+|+|+|++.+++|..++|||+..++.+.+|+.|...+.++.|++ .+.++++|+.|++|++||+++-..+.... .
T Consensus 159 ~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp-~e~Lla~Gs~d~tv~f~dletfe~I~s~~-~ 236 (825)
T KOG0267|consen 159 VLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHP-LEVLLAPGSSDRTVRFWDLETFEVISSGK-P 236 (825)
T ss_pred EEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCc-hhhhhccCCCCceeeeeccceeEEeeccC-C
Confidence 999999999999999999999999999999999999999999999999 88999999999999999997654333332 2
Q ss_pred cCCCEEEEEEcCCCCEEEEEECCC
Q 005096 397 HDNTVWDLAWHPIGYLLCSGSNDH 420 (715)
Q Consensus 397 h~~~V~~l~~spdg~~L~sgs~Dg 420 (715)
....|.++.|+++++.+++|..+.
T Consensus 237 ~~~~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 237 ETDGVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred ccCCceeeeecCCceeeecCchhh
Confidence 366899999999999888876554
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.4e-24 Score=208.14 Aligned_cols=285 Identities=18% Similarity=0.290 Sum_probs=222.4
Q ss_pred CCCCccEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCce----------EEE-----EeccCCCEEEEEEcCC-CCEEEE
Q 005096 141 NKNRCSINRVLWTP-TGRRLITGSQSGEFTLWNGQSFNF----------EMI-----LQAHDHAIRSMVWSHN-DNWMVS 203 (715)
Q Consensus 141 ~~H~~~I~~l~~sp-dg~~Latgs~dg~I~Iwd~~~~~~----------~~~-----l~~h~~~V~~l~~spd-g~~L~t 203 (715)
..|.+.|+++.+.+ .|+++++|+.||.|.|||+++... +.+ -.+|...|.++.|-|- ...+.+
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 45889999999987 689999999999999999876430 111 1357788999999884 457788
Q ss_pred EeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecC---CCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcC
Q 005096 204 GDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRT---DLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHP 280 (715)
Q Consensus 204 gs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd---~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~sp 280 (715)
++.|.+++|||.++......++ ..+.|.+-++++- ..+||+|..|-.|++.|+.++...+++.+|...|.++.|+|
T Consensus 120 sSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp 198 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSP 198 (397)
T ss_pred ccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEecc
Confidence 9999999999999987776653 4667888888773 35688888899999999999999999999999999999999
Q ss_pred CCC-EEEEEeCCCcEEEEECCCC-ceeEEec--------------cCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCC
Q 005096 281 TKS-LLVSGGKDSLVKLWDAKSG-RELCSFH--------------GHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAM 344 (715)
Q Consensus 281 dg~-~L~sgs~Dg~I~iwDl~s~-~~~~~~~--------------~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~ 344 (715)
... .|++|+.||.|++||++.- .+...+. .|.+.|..++|+.|+.++++++.|..+++|+..+|
T Consensus 199 ~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G 278 (397)
T KOG4283|consen 199 SSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESG 278 (397)
T ss_pred CceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccC
Confidence 877 5788999999999999864 3444433 45678999999999999999999999999999887
Q ss_pred eEEEEee---cCCCC-eEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCC
Q 005096 345 KELESFR---GHRKD-VTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDH 420 (715)
Q Consensus 345 ~~~~~~~---~h~~~-V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg 420 (715)
+....-. .|... -..+.....+...++---.++.+.++++-.+..+ +.+..|-..|.|.++.++=..+.++..|+
T Consensus 279 ~ntl~~~g~~~~n~~~~~~~~~~~~~s~vfv~~p~~~~lall~~~sgs~i-r~l~~h~k~i~c~~~~~~fq~~~tg~~d~ 357 (397)
T KOG4283|consen 279 RNTLREFGPIIHNQTTSFAVHIQSMDSDVFVLFPNDGSLALLNLLEGSFV-RRLSTHLKRINCAAYRPDFEQCFTGDMNG 357 (397)
T ss_pred cccccccccccccccccceEEEeecccceEEEEecCCeEEEEEccCceEE-EeeecccceeeEEeecCchhhhhccccCC
Confidence 6532211 11111 0111111114445555566788999988766544 45556888999999999988899999999
Q ss_pred eEEEEec
Q 005096 421 TTKFWCR 427 (715)
Q Consensus 421 ~I~iWdl 427 (715)
.|..|..
T Consensus 358 ni~~w~p 364 (397)
T KOG4283|consen 358 NIYMWSP 364 (397)
T ss_pred ccccccc
Confidence 9999976
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.4e-24 Score=230.01 Aligned_cols=283 Identities=21% Similarity=0.367 Sum_probs=219.4
Q ss_pred EEEcC---CCCEEEEEeCCCeEEEEeCCCCceE------EEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCce
Q 005096 150 VLWTP---TGRRLITGSQSGEFTLWNGQSFNFE------MILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNV 220 (715)
Q Consensus 150 l~~sp---dg~~Latgs~dg~I~Iwd~~~~~~~------~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~ 220 (715)
+.|++ ....|+.+.+||.|.|+|.+..... +....|...|..+.|.+....|++++.|.++++||++..++
T Consensus 55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l 134 (720)
T KOG0321|consen 55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRL 134 (720)
T ss_pred ccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeecccee
Confidence 44544 2347889999999999998765443 55678999999999999778899999999999999999988
Q ss_pred eee--ecCCCCCeEEEEEecCC-CEEEEEECCCcEEEEECCCCee---------------------------EEEecccC
Q 005096 221 KAN--KSAHKESVRDLSFCRTD-LKFCSCSDDTTVKVWDFARCQE---------------------------ERSLTGHG 270 (715)
Q Consensus 221 ~~~--~~~h~~~I~~l~~spd~-~~Las~s~Dg~V~iwdl~~~~~---------------------------~~~l~~~~ 270 (715)
... +.+|...|.+++|.+++ ..|++|+.||.|.|||++.... +.....+.
T Consensus 135 ~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s 214 (720)
T KOG0321|consen 135 VGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAAS 214 (720)
T ss_pred ecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccccccccc
Confidence 776 88999999999999966 5689999999999999853221 11112334
Q ss_pred CceEE---EEEcCCCCEEEEEeC-CCcEEEEECCCCceeEEe--------ccC---CCceEEEEEcCCCCEEEEEECCCe
Q 005096 271 WDVKS---VDWHPTKSLLVSGGK-DSLVKLWDAKSGRELCSF--------HGH---KNMVLCVKWNQNGNWVLTASKDQI 335 (715)
Q Consensus 271 ~~I~s---i~~spdg~~L~sgs~-Dg~I~iwDl~s~~~~~~~--------~~~---~~~I~sl~~spdg~~Lasgs~dg~ 335 (715)
..|.+ +.+..|+..||+++. |+.|+|||++........ ..+ ...++++.....|.+|++.+.|+.
T Consensus 215 ~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~s 294 (720)
T KOG0321|consen 215 NTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNS 294 (720)
T ss_pred CceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCc
Confidence 44555 555668889999887 999999999976543322 112 335788888888999999999999
Q ss_pred EEEEECCCCeE--EEEeecCCCCe--EEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCC-C
Q 005096 336 IKLYDIRAMKE--LESFRGHRKDV--TALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPI-G 410 (715)
Q Consensus 336 I~iwDl~t~~~--~~~~~~h~~~V--~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd-g 410 (715)
|++||+.+... +..+.++...- ..-..++ ++.+|++|+.|...++|.+++......++.+|.-.|++++|.+. -
T Consensus 295 Iy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSp-d~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~ 373 (720)
T KOG0321|consen 295 IYFYNMRSLSISPVAEFSGKLNSSFYVKSELSP-DDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSAT 373 (720)
T ss_pred EEEEeccccCcCchhhccCcccceeeeeeecCC-CCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccC
Confidence 99999986543 34444333221 1223456 88999999999999999999988888888899999999999885 3
Q ss_pred CEEEEEECCCeEEEEecCCCCCc
Q 005096 411 YLLCSGSNDHTTKFWCRNRPGDT 433 (715)
Q Consensus 411 ~~L~sgs~Dg~I~iWdl~~~~~~ 433 (715)
.-++++++|..++||++......
T Consensus 374 t~v~TcSdD~~~kiW~l~~~l~e 396 (720)
T KOG0321|consen 374 TPVATCSDDFRVKIWRLSNGLEE 396 (720)
T ss_pred CCceeeccCcceEEEeccCchhh
Confidence 45778899999999999654443
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.92 E-value=8e-26 Score=244.10 Aligned_cols=236 Identities=22% Similarity=0.406 Sum_probs=222.1
Q ss_pred cCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc
Q 005096 140 LNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNN 219 (715)
Q Consensus 140 l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~ 219 (715)
+..|...|.|+..-..++.+++|+.|..+-||.+..-..+..+.+|+..|.+|.|+.+..+|++|+.+|+|++||++..+
T Consensus 24 ~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk 103 (825)
T KOG0267|consen 24 FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAK 103 (825)
T ss_pred hhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhh
Confidence 44577888888887788899999999999999999888888899999999999999999999999999999999999999
Q ss_pred eeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 005096 220 VKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDA 299 (715)
Q Consensus 220 ~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl 299 (715)
.+.++.+|...+..+.|+|-+.+++.++.|+.+++||++...+.+.+.+|...|.++.|+|+|++++.+++|.+++|||+
T Consensus 104 ~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~ 183 (825)
T KOG0267|consen 104 IVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDL 183 (825)
T ss_pred hhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeecc
Confidence 99999999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred CCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCC
Q 005096 300 KSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLD 376 (715)
Q Consensus 300 ~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~D 376 (715)
..|+.+..|+.|...+.++.|++..-+++.|+.|++|++||+++.+.+...+.....|.+++|++ ++..+++|..+
T Consensus 184 ~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~-~~~~~~~G~q~ 259 (825)
T KOG0267|consen 184 TAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNP-DGKIVLSGEQI 259 (825)
T ss_pred cccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCccCCceeeeecC-CceeeecCchh
Confidence 99999999999999999999999999999999999999999999999999998899999999999 77777777654
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2e-24 Score=223.90 Aligned_cols=241 Identities=20% Similarity=0.311 Sum_probs=206.3
Q ss_pred CccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCC-------
Q 005096 144 RCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNN------- 216 (715)
Q Consensus 144 ~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~------- 216 (715)
-+.|.|++-+++|.+|+.|+..|.|++|.+.+++++..+..|-..|+|+.|+-|+.+|++|+.||.|.+|++.
T Consensus 81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~ 160 (476)
T KOG0646|consen 81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADN 160 (476)
T ss_pred ccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeeccccc
Confidence 4579999999999999999999999999999999999999999999999999999999999999999999753
Q ss_pred --CCceeeeecCCCCCeEEEEEecC--CCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCC
Q 005096 217 --MNNVKANKSAHKESVRDLSFCRT--DLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDS 292 (715)
Q Consensus 217 --~~~~~~~~~~h~~~I~~l~~spd--~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg 292 (715)
+-+....+..|.-.|+++.+... ..+|++++.|.+|++||+..+..+.++. ....+++++++|-+..+++|+.+|
T Consensus 161 ~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~-fp~si~av~lDpae~~~yiGt~~G 239 (476)
T KOG0646|consen 161 DHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT-FPSSIKAVALDPAERVVYIGTEEG 239 (476)
T ss_pred CCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe-cCCcceeEEEcccccEEEecCCcc
Confidence 22456778899999999998765 4679999999999999999998888776 667899999999999999999999
Q ss_pred cEEEEECCCC----------------ceeEEeccCCC--ceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCC
Q 005096 293 LVKLWDAKSG----------------RELCSFHGHKN--MVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHR 354 (715)
Q Consensus 293 ~I~iwDl~s~----------------~~~~~~~~~~~--~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~ 354 (715)
.|.+.++... ..+..+.+|.+ .|+|++++-||.+|++|+.||.|+|||+.+.++++++....
T Consensus 240 ~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~k 319 (476)
T KOG0646|consen 240 KIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSK 319 (476)
T ss_pred eEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhc
Confidence 9999877532 23456677877 99999999999999999999999999999999999988888
Q ss_pred CCeEEEEEccCCCCEEEEEeCCCcEEEEEcC
Q 005096 355 KDVTALAWHPFHEEYFVSGSLDGSIFHWLVG 385 (715)
Q Consensus 355 ~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~ 385 (715)
+.|+.+.+.+.....+..-...-.+-+|++.
T Consensus 320 gpVtnL~i~~~~~~~~l~~~~~ps~~~~~lk 350 (476)
T KOG0646|consen 320 GPVTNLQINPLERGIILFEHKQPSLPNPHLK 350 (476)
T ss_pred cccceeEeeccccceecccccCccCCchHhh
Confidence 9999999977433333333333345555543
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.8e-24 Score=223.29 Aligned_cols=257 Identities=17% Similarity=0.302 Sum_probs=203.5
Q ss_pred CceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCce-----eeeecCCCCCeEEEEEecCCCEEEEEECCC
Q 005096 176 FNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNV-----KANKSAHKESVRDLSFCRTDLKFCSCSDDT 250 (715)
Q Consensus 176 ~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~-----~~~~~~h~~~I~~l~~spd~~~Las~s~Dg 250 (715)
+.....+.+|...|.++++.+.|..|++|+.|-+|++||+..... ..........|+++.|++.+..|++.+...
T Consensus 157 ~shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~a 236 (641)
T KOG0772|consen 157 GSHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSA 236 (641)
T ss_pred ccceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCc
Confidence 345566788899999999999999999999999999999875321 122234566899999999999999999999
Q ss_pred cEEEEECCCCeeEEE------------ecccCCceEEEEEcCCCC-EEEEEeCCCcEEEEECCCCc-eeEEec-----cC
Q 005096 251 TVKVWDFARCQEERS------------LTGHGWDVKSVDWHPTKS-LLVSGGKDSLVKLWDAKSGR-ELCSFH-----GH 311 (715)
Q Consensus 251 ~V~iwdl~~~~~~~~------------l~~~~~~I~si~~spdg~-~L~sgs~Dg~I~iwDl~s~~-~~~~~~-----~~ 311 (715)
..+|+|-...+.... .++|...++|.+|+|+.+ .|++++.||+++|||+++.+ .+..++ +.
T Consensus 237 qakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~ 316 (641)
T KOG0772|consen 237 QAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGK 316 (641)
T ss_pred ceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCc
Confidence 999999654443332 247888999999999765 88999999999999998643 233332 23
Q ss_pred CCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeE---EEEeecCCC--CeEEEEEccCCCCEEEEEeCCCcEEEEEcCC
Q 005096 312 KNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKE---LESFRGHRK--DVTALAWHPFHEEYFVSGSLDGSIFHWLVGH 386 (715)
Q Consensus 312 ~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~---~~~~~~h~~--~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~ 386 (715)
.-.+++++|++|+++||+|+.||.|.+||.++... ...-..|.. .|+||+|+. ++++|++-+.|+++++||++.
T Consensus 317 Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~-dg~~LlSRg~D~tLKvWDLrq 395 (641)
T KOG0772|consen 317 RVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSY-DGNYLLSRGFDDTLKVWDLRQ 395 (641)
T ss_pred ccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEecc-ccchhhhccCCCceeeeeccc
Confidence 44689999999999999999999999999865433 233346776 899999999 899999999999999999998
Q ss_pred CCceEEEeec--cCCCEEEEEEcCCCCEEEEEEC------CCeEEEEecCCCCCc
Q 005096 387 ETPQVEIHNV--HDNTVWDLAWHPIGYLLCSGSN------DHTTKFWCRNRPGDT 433 (715)
Q Consensus 387 ~~~~~~~~~~--h~~~V~~l~~spdg~~L~sgs~------Dg~I~iWdl~~~~~~ 433 (715)
-+..+....+ ....-+.++|+|+.++|++|+. .|++.+||..+....
T Consensus 396 ~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v 450 (641)
T KOG0772|consen 396 FKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTV 450 (641)
T ss_pred cccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeE
Confidence 7766554433 2335678999999999999864 578999987654443
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.4e-24 Score=234.19 Aligned_cols=203 Identities=13% Similarity=0.322 Sum_probs=174.5
Q ss_pred EecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcC-CCCEEEEEeCCCcEEEEeCC
Q 005096 138 TSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSH-NDNWMVSGDDGGAIKYWQNN 216 (715)
Q Consensus 138 ~~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~sp-dg~~L~tgs~dg~I~iwd~~ 216 (715)
..+.||.+.|.+|.||.++ +|++++.|.+|+||++...++++.|. |..-|+||+|+| |++||++|+-||.|+||++.
T Consensus 363 ~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~ 440 (712)
T KOG0283|consen 363 CEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDDRYFISGSLDGKVRLWSIS 440 (712)
T ss_pred hhhhccchhheecccccCC-eeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCCCcEeecccccceEEeecC
Confidence 3578999999999999876 89999999999999999999999886 899999999999 67899999999999999998
Q ss_pred CCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecc--------cCCceEEEEEcCCC-CEEEE
Q 005096 217 MNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTG--------HGWDVKSVDWHPTK-SLLVS 287 (715)
Q Consensus 217 ~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~--------~~~~I~si~~spdg-~~L~s 287 (715)
..++.... ...+-|++++|+|||+..++|+.+|.+++|++...+....+.. ....|+.+.|.+.. ..|++
T Consensus 441 d~~Vv~W~-Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLV 519 (712)
T KOG0283|consen 441 DKKVVDWN-DLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLV 519 (712)
T ss_pred cCeeEeeh-hhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEE
Confidence 87776654 4458999999999999999999999999999988776544321 12379999998744 36888
Q ss_pred EeCCCcEEEEECCCCceeEEeccCCC--ceEEEEEcCCCCEEEEEECCCeEEEEECCC
Q 005096 288 GGKDSLVKLWDAKSGRELCSFHGHKN--MVLCVKWNQNGNWVLTASKDQIIKLYDIRA 343 (715)
Q Consensus 288 gs~Dg~I~iwDl~s~~~~~~~~~~~~--~I~sl~~spdg~~Lasgs~dg~I~iwDl~t 343 (715)
.+.|..|+|||+++.+.+.+|++..+ .-....|+.||++|+++++|..|+||++..
T Consensus 520 TSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 520 TSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDS 577 (712)
T ss_pred ecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCC
Confidence 88999999999998888888886543 335678899999999999999999999843
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.6e-23 Score=207.16 Aligned_cols=283 Identities=15% Similarity=0.278 Sum_probs=218.1
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeecC
Q 005096 147 INRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSA 226 (715)
Q Consensus 147 I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~~ 226 (715)
-.|+.|++.|.+||+|+.||.|.|||+.+...-+.+.+|...|++++||+||+.|+|++.|..|.+||+..+.....+ .
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~ri-r 104 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRI-R 104 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEE-E
Confidence 789999999999999999999999999999999999999999999999999999999999999999999999877665 4
Q ss_pred CCCCeEEEEEecCC-CEEEEEECCCcEEEEECCCCeeEEEeccc----CCceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 005096 227 HKESVRDLSFCRTD-LKFCSCSDDTTVKVWDFARCQEERSLTGH----GWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKS 301 (715)
Q Consensus 227 h~~~I~~l~~spd~-~~Las~s~Dg~V~iwdl~~~~~~~~l~~~----~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s 301 (715)
....|+.+.|++.. +.++++-.+..-.+.++...+....-... .....+..|++.|+++++|...|.+.+||..+
T Consensus 105 f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t 184 (405)
T KOG1273|consen 105 FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAET 184 (405)
T ss_pred ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecch
Confidence 57889999999854 33333333444555555442221111111 11223446889999999999999999999999
Q ss_pred CceeEEeccCC-CceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEE---------EEee--cCCCCeEEEEEccCCCCE
Q 005096 302 GRELCSFHGHK-NMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKEL---------ESFR--GHRKDVTALAWHPFHEEY 369 (715)
Q Consensus 302 ~~~~~~~~~~~-~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~---------~~~~--~h~~~V~~l~~sp~~~~~ 369 (715)
.+++..++... ..|..|.|+..|+.|++-+.|+.||.|+++..... .++. ..+..-.+++|+. ++.+
T Consensus 185 ~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~-dgeY 263 (405)
T KOG1273|consen 185 LECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSG-DGEY 263 (405)
T ss_pred heeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecC-CccE
Confidence 99998887655 77999999999999999999999999998732211 1111 1122345678887 6777
Q ss_pred EEEEe-CCCcEEEEEcCCCCceEEEeeccC-CCEEEEEEcCCCCEEEEEECCCeEEEEecCCCCCc
Q 005096 370 FVSGS-LDGSIFHWLVGHETPQVEIHNVHD-NTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGDT 433 (715)
Q Consensus 370 l~sgs-~DG~I~iwd~~~~~~~~~~~~~h~-~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~~~ 433 (715)
+++++ ....++||....+..+ +++.+.+ ....++.|++-...|++. ..|.|+||........
T Consensus 264 v~a~s~~aHaLYIWE~~~GsLV-KILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~~~enw 327 (405)
T KOG1273|consen 264 VCAGSARAHALYIWEKSIGSLV-KILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAVVQVENW 327 (405)
T ss_pred EEeccccceeEEEEecCCccee-eeecCCchhheeecccccceeeeeec-cCCceEEEEeecccch
Confidence 76665 3456999998776654 5555555 678899999998888887 6899999998765543
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.8e-23 Score=229.19 Aligned_cols=244 Identities=18% Similarity=0.349 Sum_probs=208.8
Q ss_pred eccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC-ceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCe
Q 005096 183 QAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN-NVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQ 261 (715)
Q Consensus 183 ~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~-~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~ 261 (715)
..|....+.|+|.++|++|++++.||.|++|+.... +.-..+..+...|.+++. ++++|++++.+++|.+|.+.+++
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~--~s~~f~~~s~~~tv~~y~fps~~ 87 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIAC--YSNHFLTGSEQNTVLRYKFPSGE 87 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEee--cccceEEeeccceEEEeeCCCCC
Confidence 468888999999999999999999999999987765 444444446777777776 45699999999999999998887
Q ss_pred eEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEEC
Q 005096 262 EERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDI 341 (715)
Q Consensus 262 ~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl 341 (715)
.-..+....-.+++++|+-+|++++.|++|-.|++.++.+......+++|++.|.+|.|+|++++||+.+.||.|+|||+
T Consensus 88 ~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~ 167 (933)
T KOG1274|consen 88 EDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDL 167 (933)
T ss_pred ccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEc
Confidence 77677777788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEeecC--------CCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccC-CCEEEEEEcCCCCE
Q 005096 342 RAMKELESFRGH--------RKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHD-NTVWDLAWHPIGYL 412 (715)
Q Consensus 342 ~t~~~~~~~~~h--------~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~-~~V~~l~~spdg~~ 412 (715)
.++.+..++.+- ...+..++|+|+++. |+....|+.|++|+.........+...+. ..++++.|+|+|.|
T Consensus 168 ~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~-la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~Y 246 (933)
T KOG1274|consen 168 QDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGT-LAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKY 246 (933)
T ss_pred ccchhhhhcccCCccccccccceeeeeeecCCCCe-EEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcE
Confidence 998876665421 345778999995454 55556688999999988877777655443 34999999999999
Q ss_pred EEEEECCCeEEEEecCC
Q 005096 413 LCSGSNDHTTKFWCRNR 429 (715)
Q Consensus 413 L~sgs~Dg~I~iWdl~~ 429 (715)
||+++.||.|.|||+++
T Consensus 247 iAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 247 IAASTLDGQILVWNVDT 263 (933)
T ss_pred EeeeccCCcEEEEeccc
Confidence 99999999999999985
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.4e-22 Score=208.74 Aligned_cols=256 Identities=12% Similarity=0.113 Sum_probs=195.2
Q ss_pred cEEEEEEcCCCCEE-EEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEE-eCCCcEEEEeCCCCceeee
Q 005096 146 SINRVLWTPTGRRL-ITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSG-DDGGAIKYWQNNMNNVKAN 223 (715)
Q Consensus 146 ~I~~l~~spdg~~L-atgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tg-s~dg~I~iwd~~~~~~~~~ 223 (715)
.+.+++|+++++.| ++++.++.|++||..+++.+..+..+. .+..++|+++++.|+++ ..++.|++||+.+.+.+..
T Consensus 32 ~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~ 110 (300)
T TIGR03866 32 RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGP-DPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAE 110 (300)
T ss_pred CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCC-CccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeE
Confidence 36789999999977 566788999999999988877776543 35688999999977654 5689999999998776665
Q ss_pred ecCCCCCeEEEEEecCCCEEEEEECCC-cEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEE-eCCCcEEEEECCC
Q 005096 224 KSAHKESVRDLSFCRTDLKFCSCSDDT-TVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSG-GKDSLVKLWDAKS 301 (715)
Q Consensus 224 ~~~h~~~I~~l~~spd~~~Las~s~Dg-~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sg-s~Dg~I~iwDl~s 301 (715)
+.. ...+.+++|+++++++++++.++ .+.+||.++.+.+..+. ....+.+++|++++++|+++ ..++.|++||+++
T Consensus 111 ~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~ 188 (300)
T TIGR03866 111 IPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVL-VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVAT 188 (300)
T ss_pred eeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEE-cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCc
Confidence 542 34568899999999999988765 56778998877665543 23456789999999988655 4589999999999
Q ss_pred CceeEEeccCC-------CceEEEEEcCCCCEEEEE-ECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEE
Q 005096 302 GRELCSFHGHK-------NMVLCVKWNQNGNWVLTA-SKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSG 373 (715)
Q Consensus 302 ~~~~~~~~~~~-------~~I~sl~~spdg~~Lasg-s~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sg 373 (715)
++.+..+..+. .....++|++++++++++ ..++.|.+||+++++.+..+. +...+.+++|++ ++.+|+++
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~-~g~~l~~~ 266 (300)
T TIGR03866 189 RKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLL-VGQRVWQLAFTP-DEKYLLTT 266 (300)
T ss_pred ceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE-eCCCcceEEECC-CCCEEEEE
Confidence 88776654221 123568899999986654 456789999999888776654 445799999999 66666665
Q ss_pred -eCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcC
Q 005096 374 -SLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHP 408 (715)
Q Consensus 374 -s~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~sp 408 (715)
..+|.|++||+++...+..+.. ....+.+++++
T Consensus 267 ~~~~~~i~v~d~~~~~~~~~~~~--~~~~~~~~~~~ 300 (300)
T TIGR03866 267 NGVSNDVSVIDVAALKVIKSIKV--GRLPWGVVVRP 300 (300)
T ss_pred cCCCCeEEEEECCCCcEEEEEEc--ccccceeEeCC
Confidence 5689999999998776666643 35668887753
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.3e-25 Score=219.87 Aligned_cols=246 Identities=22% Similarity=0.386 Sum_probs=215.3
Q ss_pred eEEEEeccCCCEEEEEEcCCC-CEEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEE
Q 005096 178 FEMILQAHDHAIRSMVWSHND-NWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWD 256 (715)
Q Consensus 178 ~~~~l~~h~~~V~~l~~spdg-~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwd 256 (715)
.+..+.+|.+.|.|++=+++. ..+++|+.||.|+|||+...++...+..|.+.|..|++.. ..+++++.|.+|+.|.
T Consensus 58 Fv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk 135 (433)
T KOG0268|consen 58 FVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWK 135 (433)
T ss_pred chhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeee
Confidence 455567899999999999887 7889999999999999999999999999999999999976 7799999999999999
Q ss_pred CCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCceEEEEEcCCC-CEEEEEECCCe
Q 005096 257 FARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNG-NWVLTASKDQI 335 (715)
Q Consensus 257 l~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg-~~Lasgs~dg~ 335 (715)
++. ..++++. ....+..|+-+..++.++|++. .|.|||......+..+......|.++.|++.. ..|++|.+|+.
T Consensus 136 ~~~-~p~~til-g~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrs 211 (433)
T KOG0268|consen 136 IDG-PPLHTIL-GKSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRS 211 (433)
T ss_pred ccC-Ccceeee-ccccccccccccccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCc
Confidence 865 3556655 3445677777777788888875 59999999888999998888899999999955 56677779999
Q ss_pred EEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEE
Q 005096 336 IKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCS 415 (715)
Q Consensus 336 I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~s 415 (715)
|.|||+++...+..+. ....-+.|+|+| ....|+++++|..++.||++.-.....+..+|.+.|.+++|+|.|.-|++
T Consensus 212 IvLyD~R~~~Pl~KVi-~~mRTN~IswnP-eafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~Efvs 289 (433)
T KOG0268|consen 212 IVLYDLRQASPLKKVI-LTMRTNTICWNP-EAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVS 289 (433)
T ss_pred eEEEecccCCccceee-eeccccceecCc-cccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhcc
Confidence 9999999999887765 445568899999 88899999999999999999998888899999999999999999999999
Q ss_pred EECCCeEEEEecCCCC
Q 005096 416 GSNDHTTKFWCRNRPG 431 (715)
Q Consensus 416 gs~Dg~I~iWdl~~~~ 431 (715)
||.|.+|+||.++...
T Consensus 290 gsyDksIRIf~~~~~~ 305 (433)
T KOG0268|consen 290 GSYDKSIRIFPVNHGH 305 (433)
T ss_pred ccccceEEEeecCCCc
Confidence 9999999999987543
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.92 E-value=5e-23 Score=203.38 Aligned_cols=265 Identities=19% Similarity=0.400 Sum_probs=199.2
Q ss_pred cCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCC----CCceEEEEeccCCCEEEEEEcC--CCCEEEEEeCCCcEEEE
Q 005096 140 LNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQ----SFNFEMILQAHDHAIRSMVWSH--NDNWMVSGDDGGAIKYW 213 (715)
Q Consensus 140 l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~----~~~~~~~l~~h~~~V~~l~~sp--dg~~L~tgs~dg~I~iw 213 (715)
..+|.+-|+|+.|...|+++|+|+.|.+|+|||.+ +..+....+.|++.|..|.|.+ -|+.+|+++.|++|.||
T Consensus 9 ~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iW 88 (361)
T KOG2445|consen 9 DSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIW 88 (361)
T ss_pred ccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeee
Confidence 45799999999999999999999999999999954 3567778899999999999965 37999999999999999
Q ss_pred eCCC---------CceeeeecCCCCCeEEEEEec--CCCEEEEEECCCcEEEEECCCC------eeEEEec-------cc
Q 005096 214 QNNM---------NNVKANKSAHKESVRDLSFCR--TDLKFCSCSDDTTVKVWDFARC------QEERSLT-------GH 269 (715)
Q Consensus 214 d~~~---------~~~~~~~~~h~~~I~~l~~sp--d~~~Las~s~Dg~V~iwdl~~~------~~~~~l~-------~~ 269 (715)
.-.. -....++......|++++|.| -|..||+++.||+||||+.-+- .....+. .+
T Consensus 89 EE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~ 168 (361)
T KOG2445|consen 89 EEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKN 168 (361)
T ss_pred eecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccc
Confidence 7521 123455677888999999998 4678999999999999986432 2222222 35
Q ss_pred CCceEEEEEcCC---CCEEEEEeCC-----CcEEEEECCCC----ceeEEeccCCCceEEEEEcCC----CCEEEEEECC
Q 005096 270 GWDVKSVDWHPT---KSLLVSGGKD-----SLVKLWDAKSG----RELCSFHGHKNMVLCVKWNQN----GNWVLTASKD 333 (715)
Q Consensus 270 ~~~I~si~~spd---g~~L~sgs~D-----g~I~iwDl~s~----~~~~~~~~~~~~I~sl~~spd----g~~Lasgs~d 333 (715)
.....||.|++. ..+|++|+.+ +.++||....+ ..+.++.+|...|+.|+|.|+ -..||+++.|
T Consensus 169 ~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kD 248 (361)
T KOG2445|consen 169 KQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKD 248 (361)
T ss_pred cCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecC
Confidence 567789999974 3478888766 47889876532 345566789999999999995 3578999999
Q ss_pred CeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEE
Q 005096 334 QIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLL 413 (715)
Q Consensus 334 g~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L 413 (715)
| |+||.++....-. . .+..+ +.+.-+.+.| ..+..+..|.+.|+.+.|+-.|..|
T Consensus 249 g-v~I~~v~~~~s~i-~---------------~ee~~-~~~~~~~l~v-------~~vs~~~~H~~~VWrv~wNmtGtiL 303 (361)
T KOG2445|consen 249 G-VRIFKVKVARSAI-E---------------EEEVL-APDLMTDLPV-------EKVSELDDHNGEVWRVRWNMTGTIL 303 (361)
T ss_pred c-EEEEEEeeccchh-h---------------hhccc-CCCCccccce-------EEeeeccCCCCceEEEEEeeeeeEE
Confidence 9 9999987432111 0 00111 0111111111 2234566799999999999999999
Q ss_pred EEEECCCeEEEEecCC
Q 005096 414 CSGSNDHTTKFWCRNR 429 (715)
Q Consensus 414 ~sgs~Dg~I~iWdl~~ 429 (715)
++.+.||+||+|..+-
T Consensus 304 sStGdDG~VRLWkany 319 (361)
T KOG2445|consen 304 SSTGDDGCVRLWKANY 319 (361)
T ss_pred eecCCCceeeehhhhh
Confidence 9999999999998754
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.8e-24 Score=221.50 Aligned_cols=238 Identities=19% Similarity=0.314 Sum_probs=209.2
Q ss_pred CCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc--eEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCce
Q 005096 143 NRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFN--FEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNV 220 (715)
Q Consensus 143 H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~--~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~ 220 (715)
....|+++.+.+||+.|++|++-.+|.|||+..-. +...+....-...+++.++|.+..++++.||.|.|||+....+
T Consensus 464 rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~ 543 (705)
T KOG0639|consen 464 RDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTL 543 (705)
T ss_pred cccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEccccee
Confidence 35568999999999999999999999999987543 3344444445678899999999999999999999999999999
Q ss_pred eeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 005096 221 KANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAK 300 (715)
Q Consensus 221 ~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~ 300 (715)
++.+.+|.+.+.||.++.||..|-+|+-|++||.||++++..+.... ....|.++..+|++.+|++|-+++.+.|....
T Consensus 544 VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMens~vevlh~s 622 (705)
T KOG0639|consen 544 VRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTS 622 (705)
T ss_pred eecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecccCcEEEEecC
Confidence 99999999999999999999999999999999999999887665543 56789999999999999999999999988866
Q ss_pred CCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEE
Q 005096 301 SGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIF 380 (715)
Q Consensus 301 s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~ 380 (715)
+.....+..|.+-|.++.|...|+|+++.+.|+.+..|.+--|..+...+ ..+.|.++.++. ++++|+||+.|....
T Consensus 623 -kp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqsk-E~SsVlsCDIS~-ddkyIVTGSGdkkAT 699 (705)
T KOG0639|consen 623 -KPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISF-DDKYIVTGSGDKKAT 699 (705)
T ss_pred -CccceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeecc-ccCcceeeeecc-CceEEEecCCCcceE
Confidence 44456667789999999999999999999999999999998888887766 567799999998 899999999999888
Q ss_pred EEEc
Q 005096 381 HWLV 384 (715)
Q Consensus 381 iwd~ 384 (715)
||.+
T Consensus 700 VYeV 703 (705)
T KOG0639|consen 700 VYEV 703 (705)
T ss_pred EEEE
Confidence 8875
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.4e-22 Score=200.82 Aligned_cols=264 Identities=19% Similarity=0.336 Sum_probs=208.0
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEE
Q 005096 186 DHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERS 265 (715)
Q Consensus 186 ~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~ 265 (715)
...|++|.|++.++.|++++.||++++||+....+...+ .|...+.+++|.. ...+++|+.||.|+++|++++... .
T Consensus 13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~-~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~-~ 89 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKF-KHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNED-Q 89 (323)
T ss_pred hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhe-ecCCceeeeeccC-CceEEEeccCceEEEEEecCCcce-e
Confidence 578999999999999999999999999999988665554 6889999999985 578999999999999999887554 4
Q ss_pred ecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCe
Q 005096 266 LTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMK 345 (715)
Q Consensus 266 l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~ 345 (715)
+..|...|.||.+++....+++|+.|++|++||.+....+..+. ....|.|+..+ ++.|++|+.|..|.+||+++.+
T Consensus 90 igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn~~ 166 (323)
T KOG1036|consen 90 IGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCMDVS--GNRLVVGTSDRKVLIYDLRNLD 166 (323)
T ss_pred eccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccc-cCceEEEEecc--CCEEEEeecCceEEEEEccccc
Confidence 55699999999999988999999999999999999755555555 34478888775 7789999999999999999877
Q ss_pred EEEEee--cCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCce---EEEeeccC---------CCEEEEEEcCCCC
Q 005096 346 ELESFR--GHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQ---VEIHNVHD---------NTVWDLAWHPIGY 411 (715)
Q Consensus 346 ~~~~~~--~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~---~~~~~~h~---------~~V~~l~~spdg~ 411 (715)
.....+ ..+-.+.+|++.| ++.-+++++-||+|.+=.++..... .-.+..|. .+|++|+|+|-..
T Consensus 167 ~~~q~reS~lkyqtR~v~~~p-n~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~ 245 (323)
T KOG1036|consen 167 EPFQRRESSLKYQTRCVALVP-NGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHG 245 (323)
T ss_pred chhhhccccceeEEEEEEEec-CCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccc
Confidence 655332 3445689999999 7888888999999988766655111 11122232 2699999999999
Q ss_pred EEEEEECCCeEEEEecCCCCCcccccccccCCccccceeeEEeecCCCCccC
Q 005096 412 LLCSGSNDHTTKFWCRNRPGDTARDKFNMGQNQGYGEQNAVFAGRMPGNFPL 463 (715)
Q Consensus 412 ~L~sgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 463 (715)
.|+||+.||.|.+||+...++ +....+|......++++.+|..++
T Consensus 246 tfaTgGsDG~V~~Wd~~~rKr-------l~q~~~~~~SI~slsfs~dG~~LA 290 (323)
T KOG1036|consen 246 TFATGGSDGIVNIWDLFNRKR-------LKQLAKYETSISSLSFSMDGSLLA 290 (323)
T ss_pred eEEecCCCceEEEccCcchhh-------hhhccCCCCceEEEEeccCCCeEE
Confidence 999999999999999854222 233455655566677776655543
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.4e-24 Score=234.46 Aligned_cols=242 Identities=26% Similarity=0.511 Sum_probs=204.7
Q ss_pred cEEEEEEcC-CCCEEEEEeCCCeEEEEeCCC---CceEEEEeccCCCEEEEEEcCCC-CEEEEEeCCCcEEEEeCCCCce
Q 005096 146 SINRVLWTP-TGRRLITGSQSGEFTLWNGQS---FNFEMILQAHDHAIRSMVWSHND-NWMVSGDDGGAIKYWQNNMNNV 220 (715)
Q Consensus 146 ~I~~l~~sp-dg~~Latgs~dg~I~Iwd~~~---~~~~~~l~~h~~~V~~l~~spdg-~~L~tgs~dg~I~iwd~~~~~~ 220 (715)
.+..|.|+. +.++|||++.+|.|.+||+.. .+.+..|..|+..|+++.|+... ++|++|+.||+|++||++..+.
T Consensus 89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S 168 (839)
T KOG0269|consen 89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS 168 (839)
T ss_pred ehhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccc
Confidence 466778875 567899999999999999987 56677889999999999998764 7889999999999999999998
Q ss_pred eeeecCCCCCeEEEEEec-CCCEEEEEECCCcEEEEECCCC-eeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005096 221 KANKSAHKESVRDLSFCR-TDLKFCSCSDDTTVKVWDFARC-QEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWD 298 (715)
Q Consensus 221 ~~~~~~h~~~I~~l~~sp-d~~~Las~s~Dg~V~iwdl~~~-~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwD 298 (715)
+.++.+..+.|+++.|++ .+.+|+++.+.|.|.+||++.. +....+.+|.+.|.|+.|+|++.+||+|+.|+.|+|||
T Consensus 169 ~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd 248 (839)
T KOG0269|consen 169 KSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWD 248 (839)
T ss_pred cccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEe
Confidence 888889999999999998 5688999999999999999754 45677889999999999999999999999999999999
Q ss_pred CCCCce--eEEeccCCCceEEEEEcCCCCE-EEEEE--CCCeEEEEECCCC-eEEEEeecCCCCeEEEEEccCCCCEEEE
Q 005096 299 AKSGRE--LCSFHGHKNMVLCVKWNQNGNW-VLTAS--KDQIIKLYDIRAM-KELESFRGHRKDVTALAWHPFHEEYFVS 372 (715)
Q Consensus 299 l~s~~~--~~~~~~~~~~I~sl~~spdg~~-Lasgs--~dg~I~iwDl~t~-~~~~~~~~h~~~V~~l~~sp~~~~~l~s 372 (715)
..+.+. +.++. ....|.+|+|-|+..+ |++++ .|-.|+|||++.- -...++..|...++.++|...+...|.+
T Consensus 249 ~t~~~~~~~~tIn-Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s 327 (839)
T KOG0269|consen 249 MTDSRAKPKHTIN-TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWS 327 (839)
T ss_pred ccCCCccceeEEe-ecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEe
Confidence 986543 33333 4578999999997654 55555 5678999999754 3467888999999999998766778899
Q ss_pred EeCCCcEEEEEcCCCC
Q 005096 373 GSLDGSIFHWLVGHET 388 (715)
Q Consensus 373 gs~DG~I~iwd~~~~~ 388 (715)
++.||+|..-.+++..
T Consensus 328 ~sKD~tv~qh~~knat 343 (839)
T KOG0269|consen 328 CSKDGTVLQHLFKNAT 343 (839)
T ss_pred ecCccHHHHhhhhccc
Confidence 9999988766555443
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-22 Score=200.64 Aligned_cols=243 Identities=20% Similarity=0.382 Sum_probs=193.2
Q ss_pred ccCCCEEEEEEcC-CCCEEEEEeCCCcEEEEeCCCC-ce-eeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCC
Q 005096 184 AHDHAIRSMVWSH-NDNWMVSGDDGGAIKYWQNNMN-NV-KANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARC 260 (715)
Q Consensus 184 ~h~~~V~~l~~sp-dg~~L~tgs~dg~I~iwd~~~~-~~-~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~ 260 (715)
.-++.|.+|+||| ...+|++++.|++|++|+++.. .. -+....|...|.+++|+.|+..+++++.|+.+++||+.++
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~ 104 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG 104 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC
Confidence 4567899999999 4566679999999999998873 22 2344678999999999999999999999999999999998
Q ss_pred eeEEEecccCCceEEEEEcCCCC--EEEEEeCCCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEE
Q 005096 261 QEERSLTGHGWDVKSVDWHPTKS--LLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKL 338 (715)
Q Consensus 261 ~~~~~l~~~~~~I~si~~spdg~--~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~i 338 (715)
.+..+..|...|.++.|-+... .|++|+.|.+|+.||+|....+.++. ....+.++..- ..+++++..++.|.+
T Consensus 105 -Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa~Dv~--~pm~vVata~r~i~v 180 (347)
T KOG0647|consen 105 -QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYAADVL--YPMAVVATAERHIAV 180 (347)
T ss_pred -CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee-ccceeeehhcc--CceeEEEecCCcEEE
Confidence 5566778999999999987665 89999999999999999998888887 45556666543 457888999999999
Q ss_pred EECCCCeEEE-Eee-cCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCC--CceEEEeeccC---------CCEEEEE
Q 005096 339 YDIRAMKELE-SFR-GHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHE--TPQVEIHNVHD---------NTVWDLA 405 (715)
Q Consensus 339 wDl~t~~~~~-~~~-~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~--~~~~~~~~~h~---------~~V~~l~ 405 (715)
|++++..... ... ..+-.++||++.. +.+..+.|+-+|++.|..++.. +.-+. +.-|. ..|++|+
T Consensus 181 ynL~n~~te~k~~~SpLk~Q~R~va~f~-d~~~~alGsiEGrv~iq~id~~~~~~nFt-FkCHR~~~~~~~~VYaVNsi~ 258 (347)
T KOG0647|consen 181 YNLENPPTEFKRIESPLKWQTRCVACFQ-DKDGFALGSIEGRVAIQYIDDPNPKDNFT-FKCHRSTNSVNDDVYAVNSIA 258 (347)
T ss_pred EEcCCCcchhhhhcCcccceeeEEEEEe-cCCceEeeeecceEEEEecCCCCccCcee-EEEeccCCCCCCceEEecceE
Confidence 9997654322 111 2334588999888 5666699999999999988775 22222 22233 2588999
Q ss_pred EcCCCCEEEEEECCCeEEEEecCCCCC
Q 005096 406 WHPIGYLLCSGSNDHTTKFWCRNRPGD 432 (715)
Q Consensus 406 ~spdg~~L~sgs~Dg~I~iWdl~~~~~ 432 (715)
|+|....|+|++.||++.+||-+...+
T Consensus 259 FhP~hgtlvTaGsDGtf~FWDkdar~k 285 (347)
T KOG0647|consen 259 FHPVHGTLVTAGSDGTFSFWDKDARTK 285 (347)
T ss_pred eecccceEEEecCCceEEEecchhhhh
Confidence 999989999999999999999765333
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.4e-21 Score=203.71 Aligned_cols=287 Identities=17% Similarity=0.239 Sum_probs=228.5
Q ss_pred CCCCccEEEEEEcC--CCCEEEEEe--CCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 005096 141 NKNRCSINRVLWTP--TGRRLITGS--QSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNN 216 (715)
Q Consensus 141 ~~H~~~I~~l~~sp--dg~~Latgs--~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~ 216 (715)
......|.|++||+ .|.+|+... .+..+.|||...+......+..++.|....|+|.+..|++....+.+.+|+++
T Consensus 151 g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~ 230 (626)
T KOG2106|consen 151 GFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLR 230 (626)
T ss_pred ccccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEcc
Confidence 35667899999997 355555553 35568999999988888888888999999999987666555567899999998
Q ss_pred CCceeeee----cCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCC
Q 005096 217 MNNVKANK----SAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDS 292 (715)
Q Consensus 217 ~~~~~~~~----~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg 292 (715)
.+.+.+.. +..+..|.|++|.+++. +++|..+|.|.||+..+.+..+....|.+.|.+++.-.+|.+|- |+.|.
T Consensus 231 ~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllS-GgKDR 308 (626)
T KOG2106|consen 231 GGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLS-GGKDR 308 (626)
T ss_pred CCceEEEeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEee-cCccc
Confidence 87655443 22346799999999886 77999999999999998888888779999999999999887555 99999
Q ss_pred cEEEEECCCCc--e---------eE-----------------------------EeccCCCceEEEEEcCCCCEEEEEEC
Q 005096 293 LVKLWDAKSGR--E---------LC-----------------------------SFHGHKNMVLCVKWNQNGNWVLTASK 332 (715)
Q Consensus 293 ~I~iwDl~s~~--~---------~~-----------------------------~~~~~~~~I~sl~~spdg~~Lasgs~ 332 (715)
.|..||-+-.+ . ++ ...+|......++.+++.+.+++++.
T Consensus 309 ki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gq 388 (626)
T KOG2106|consen 309 KIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQ 388 (626)
T ss_pred eEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccC
Confidence 99999832110 0 00 11245667788999999999999999
Q ss_pred CCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCE
Q 005096 333 DQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYL 412 (715)
Q Consensus 333 dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 412 (715)
|+.++||+ ..+.+.+. .....+.|+.|+| .+ .|+.|+..|...+.|.++ ...+.+... ...+++++|+++|.+
T Consensus 389 dk~v~lW~--~~k~~wt~-~~~d~~~~~~fhp-sg-~va~Gt~~G~w~V~d~e~-~~lv~~~~d-~~~ls~v~ysp~G~~ 461 (626)
T KOG2106|consen 389 DKHVRLWN--DHKLEWTK-IIEDPAECADFHP-SG-VVAVGTATGRWFVLDTET-QDLVTIHTD-NEQLSVVRYSPDGAF 461 (626)
T ss_pred cceEEEcc--CCceeEEE-EecCceeEeeccC-cc-eEEEeeccceEEEEeccc-ceeEEEEec-CCceEEEEEcCCCCE
Confidence 99999999 33444333 3567889999999 55 999999999999999988 444455544 789999999999999
Q ss_pred EEEEECCCeEEEEecCCCCCcccc
Q 005096 413 LCSGSNDHTTKFWCRNRPGDTARD 436 (715)
Q Consensus 413 L~sgs~Dg~I~iWdl~~~~~~~~~ 436 (715)
||.|+.|+.|+||.++..+.....
T Consensus 462 lAvgs~d~~iyiy~Vs~~g~~y~r 485 (626)
T KOG2106|consen 462 LAVGSHDNHIYIYRVSANGRKYSR 485 (626)
T ss_pred EEEecCCCeEEEEEECCCCcEEEE
Confidence 999999999999999887765543
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.7e-22 Score=206.36 Aligned_cols=291 Identities=18% Similarity=0.262 Sum_probs=225.2
Q ss_pred EEEecCCCCccEEEEEEcCCC--CEEEEEeCCCeEEEEeCCC----CceEEEEeccCCCEEEEEEcCCC-CEEEEEeCCC
Q 005096 136 VHTSLNKNRCSINRVLWTPTG--RRLITGSQSGEFTLWNGQS----FNFEMILQAHDHAIRSMVWSHND-NWMVSGDDGG 208 (715)
Q Consensus 136 ~~~~l~~H~~~I~~l~~spdg--~~Latgs~dg~I~Iwd~~~----~~~~~~l~~h~~~V~~l~~spdg-~~L~tgs~dg 208 (715)
....++-+.++|++++|+|.. ++||+|+.-|.|-+||+.+ ...+..+..|...|.+|.|+|.+ ..+++.+.||
T Consensus 178 ~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDG 257 (498)
T KOG4328|consen 178 ILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDG 257 (498)
T ss_pred ecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCc
Confidence 344566789999999999965 4788999999999999942 33466778899999999999964 6888999999
Q ss_pred cEEEEeCCCCceeeeec--CCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCee-EEEecccCCceEEEEEcCCCC-E
Q 005096 209 AIKYWQNNMNNVKANKS--AHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQE-ERSLTGHGWDVKSVDWHPTKS-L 284 (715)
Q Consensus 209 ~I~iwd~~~~~~~~~~~--~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~-~~~l~~~~~~I~si~~spdg~-~ 284 (715)
+|++-|++.......+. .....+.++.|+.+...++++..-|.+.+||+++... ...+.-|...|++|+++|-.. +
T Consensus 258 tiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~ 337 (498)
T KOG4328|consen 258 TIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWF 337 (498)
T ss_pred eeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchh
Confidence 99999998875443333 3556678888888888888888888999999987655 556677888999999999764 8
Q ss_pred EEEEeCCCcEEEEECCCC--ce--eEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECC----CCeEEEEeecCC--
Q 005096 285 LVSGGKDSLVKLWDAKSG--RE--LCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIR----AMKELESFRGHR-- 354 (715)
Q Consensus 285 L~sgs~Dg~I~iwDl~s~--~~--~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~----t~~~~~~~~~h~-- 354 (715)
|++++.|++++|||++.- +. +.....|...|.+..|||++-.|++.+.|..|+|||.. ....+.++. |.
T Consensus 338 laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~-Hn~~ 416 (498)
T KOG4328|consen 338 LATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIP-HNNR 416 (498)
T ss_pred eeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceee-ccCc
Confidence 899999999999999853 22 23345699999999999988779999999999999984 233333333 22
Q ss_pred --C--CeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEE-EEEcCCCC-EEEEEECCCeEEEEecC
Q 005096 355 --K--DVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWD-LAWHPIGY-LLCSGSNDHTTKFWCRN 428 (715)
Q Consensus 355 --~--~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~-l~~spdg~-~L~sgs~Dg~I~iWdl~ 428 (715)
. ......|.| +..+|++|..-..|-|+|-+.+..+.++.......|.+ ..|+|-+. +++-++..|.|+||.-+
T Consensus 417 t~RwlT~fKA~W~P-~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 417 TGRWLTPFKAAWDP-DYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTNK 495 (498)
T ss_pred ccccccchhheeCC-CccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEecC
Confidence 2 244568999 89999999999999999987776555544433334544 47999887 44555567889988643
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.8e-22 Score=209.78 Aligned_cols=261 Identities=17% Similarity=0.300 Sum_probs=214.6
Q ss_pred EEEEEEcCCCCEEEEE--eCCCeEEEEeCCC--CceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceee
Q 005096 147 INRVLWTPTGRRLITG--SQSGEFTLWNGQS--FNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKA 222 (715)
Q Consensus 147 I~~l~~spdg~~Latg--s~dg~I~Iwd~~~--~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~ 222 (715)
|.++.|+.... |+++ +.|..|++|.-.. .+....-+.....-.|++......|+++|+..+.|+|||+....+.+
T Consensus 37 ~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr 115 (673)
T KOG4378|consen 37 DFSFNWQRRNF-LVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHR 115 (673)
T ss_pred ceeeeccccce-EEEeecCCceeEEEecccCCCCccceeeccccchHHHHhhhhcceeeeccCcCceeeehhhHHHHHhh
Confidence 88999988774 4444 5577888996332 22222222222244455555555899999999999999999888888
Q ss_pred eecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEeccc-CCceEEEEEcCCCC-EEEEEeCCCcEEEEECC
Q 005096 223 NKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGH-GWDVKSVDWHPTKS-LLVSGGKDSLVKLWDAK 300 (715)
Q Consensus 223 ~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~-~~~I~si~~spdg~-~L~sgs~Dg~I~iwDl~ 300 (715)
.+++|.+.|+++.+...+.+||+++..|.|.|..+.++.....|... ...|+-+.|++..+ +|.+++++|.|.+||+.
T Consensus 116 ~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~ 195 (673)
T KOG4378|consen 116 FLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQ 195 (673)
T ss_pred hccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEecc
Confidence 99999999999999999999999999999999999988887777654 44567899999776 66788999999999999
Q ss_pred CCceeEEe-ccCCCceEEEEEcC-CCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCc
Q 005096 301 SGRELCSF-HGHKNMVLCVKWNQ-NGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGS 378 (715)
Q Consensus 301 s~~~~~~~-~~~~~~I~sl~~sp-dg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~ 378 (715)
....+..+ +.|......|+|+| +..+|++.+.|..|.+||++..+....+. .+...+.++|++ ++.+|++|+..|.
T Consensus 196 g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~-y~~Plstvaf~~-~G~~L~aG~s~G~ 273 (673)
T KOG4378|consen 196 GMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLT-YSHPLSTVAFSE-CGTYLCAGNSKGE 273 (673)
T ss_pred CCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceee-ecCCcceeeecC-CceEEEeecCCce
Confidence 77766654 57899999999999 55678889999999999999766666554 667899999999 9999999999999
Q ss_pred EEEEEcCCCCceEEEeeccCCCEEEEEEcCCC
Q 005096 379 IFHWLVGHETPQVEIHNVHDNTVWDLAWHPIG 410 (715)
Q Consensus 379 I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg 410 (715)
|+.||++..+..+.+...|+..|++++|-+.-
T Consensus 274 ~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 274 LIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred EEEEecccCCCCceEeeecccceeEEEeeecc
Confidence 99999999999999999999999999998764
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.4e-22 Score=205.32 Aligned_cols=280 Identities=22% Similarity=0.368 Sum_probs=209.4
Q ss_pred EEEEEcCCCCEEEEEeCCC-----eEEEEeCCCCceEEEEeccC----CCEEEEEEcC-------CCCEEEEEeCCCcEE
Q 005096 148 NRVLWTPTGRRLITGSQSG-----EFTLWNGQSFNFEMILQAHD----HAIRSMVWSH-------NDNWMVSGDDGGAIK 211 (715)
Q Consensus 148 ~~l~~spdg~~Latgs~dg-----~I~Iwd~~~~~~~~~l~~h~----~~V~~l~~sp-------dg~~L~tgs~dg~I~ 211 (715)
-.+.+-|+.++|+++-.+. .|+||+-... ..+..|+ ..-.|++|.. .|+++|+|+.|..|.
T Consensus 129 de~~V~psDnlIl~ar~eddvs~LEvYVyn~~e~---nlYvHHD~ilpafPLC~ewld~~~~~~~~gNyvAiGtmdp~Ie 205 (463)
T KOG0270|consen 129 DEEQVKPSDNLILCARNEDDVSYLEVYVYNEEEE---NLYVHHDFILPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIE 205 (463)
T ss_pred ccceeccCCcEEEEeeccCCceEEEEEEEcCCCc---ceeEecceeccCcchhhhhhhcCCCCCCCcceEEEeccCceeE
Confidence 3455667666777775432 3566664431 1222232 2235677743 258999999999999
Q ss_pred EEeCCCCce---------------------eeeecCCCCCeEEEEEecCC-CEEEEEECCCcEEEEECCCCeeEEEeccc
Q 005096 212 YWQNNMNNV---------------------KANKSAHKESVRDLSFCRTD-LKFCSCSDDTTVKVWDFARCQEERSLTGH 269 (715)
Q Consensus 212 iwd~~~~~~---------------------~~~~~~h~~~I~~l~~spd~-~~Las~s~Dg~V~iwdl~~~~~~~~l~~~ 269 (715)
|||+.-... .....+|++.|.+|+|+.+- +.||+|+.|.+|++||+.++++..++..|
T Consensus 206 IWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~ 285 (463)
T KOG0270|consen 206 IWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHH 285 (463)
T ss_pred EeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhc
Confidence 999753210 00113588888899998754 56899999999999999999999999999
Q ss_pred CCceEEEEEcCCC-CEEEEEeCCCcEEEEECCCCceeEEeccCCCceEEEEEcCC-CCEEEEEECCCeEEEEECCCC-eE
Q 005096 270 GWDVKSVDWHPTK-SLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQN-GNWVLTASKDQIIKLYDIRAM-KE 346 (715)
Q Consensus 270 ~~~I~si~~spdg-~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spd-g~~Lasgs~dg~I~iwDl~t~-~~ 346 (715)
...|.+++|++.. .+|++|+.|++|.++|+|........-...+.|..++|.+. ...+++++.||+|+-+|+|.. +.
T Consensus 286 ~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~ 365 (463)
T KOG0270|consen 286 GKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKP 365 (463)
T ss_pred CCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCc
Confidence 9999999999864 58999999999999999953332222225678999999995 467778889999999999975 89
Q ss_pred EEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEE-EeeccCCCEEEEEEcCC-CCEEEEEECCCeEEE
Q 005096 347 LESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVE-IHNVHDNTVWDLAWHPI-GYLLCSGSNDHTTKF 424 (715)
Q Consensus 347 ~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~-~~~~h~~~V~~l~~spd-g~~L~sgs~Dg~I~i 424 (715)
+.+++.|+..|.+|+++.....++++++.|+.|++|++........ .....-+...|.++.++ -.+|+.|+..+.++|
T Consensus 366 vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~v 445 (463)
T KOG0270|consen 366 VWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRV 445 (463)
T ss_pred eeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEE
Confidence 9999999999999999998889999999999999999865443211 11111234667777777 357788888889999
Q ss_pred EecCCC
Q 005096 425 WCRNRP 430 (715)
Q Consensus 425 Wdl~~~ 430 (715)
||+...
T Consensus 446 wd~~~~ 451 (463)
T KOG0270|consen 446 WDIFTN 451 (463)
T ss_pred eecccC
Confidence 998653
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.5e-22 Score=197.03 Aligned_cols=215 Identities=23% Similarity=0.375 Sum_probs=179.6
Q ss_pred eecCCCCCeEEEEEec-CCCEEEEEECCCcEEEEECCCCee----------EE-----EecccCCceEEEEEcC-CCCEE
Q 005096 223 NKSAHKESVRDLSFCR-TDLKFCSCSDDTTVKVWDFARCQE----------ER-----SLTGHGWDVKSVDWHP-TKSLL 285 (715)
Q Consensus 223 ~~~~h~~~I~~l~~sp-d~~~Las~s~Dg~V~iwdl~~~~~----------~~-----~l~~~~~~I~si~~sp-dg~~L 285 (715)
....|.+.|+++.+.+ .++++++|+.||.|.+||+++... +. .-.+|+..|.++.|.| |...|
T Consensus 38 ~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmF 117 (397)
T KOG4283|consen 38 FVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMF 117 (397)
T ss_pred eeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCcee
Confidence 3456889999999876 678999999999999999965331 11 1135778899999998 44588
Q ss_pred EEEeCCCcEEEEECCCCceeEEeccCCCceEEEEEcCC---CCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEE
Q 005096 286 VSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQN---GNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAW 362 (715)
Q Consensus 286 ~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spd---g~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~ 362 (715)
.+++.|.++++||.++......|+ ..+.|.+-+++|- --+||+|..|-.|++.|+.+|..-.++.+|...|.++.|
T Consensus 118 tssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~W 196 (397)
T KOG4283|consen 118 TSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEW 196 (397)
T ss_pred ecccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEe
Confidence 889999999999999988888887 5677888888883 347788888999999999999999999999999999999
Q ss_pred ccCCCCEEEEEeCCCcEEEEEcCCCCceEEE--------------eeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecC
Q 005096 363 HPFHEEYFVSGSLDGSIFHWLVGHETPQVEI--------------HNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRN 428 (715)
Q Consensus 363 sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~--------------~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~ 428 (715)
+|..+.+|++|+.||.|++||++.....+.. ...|.+.|+.++|+.|+.++++++.|..+++|+..
T Consensus 197 sp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~ 276 (397)
T KOG4283|consen 197 SPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNME 276 (397)
T ss_pred ccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecc
Confidence 9988889999999999999999865333222 33577889999999999999999999999999998
Q ss_pred CCCCcccccc
Q 005096 429 RPGDTARDKF 438 (715)
Q Consensus 429 ~~~~~~~~~~ 438 (715)
......++-.
T Consensus 277 ~G~ntl~~~g 286 (397)
T KOG4283|consen 277 SGRNTLREFG 286 (397)
T ss_pred cCcccccccc
Confidence 8777666533
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.7e-21 Score=210.07 Aligned_cols=317 Identities=20% Similarity=0.336 Sum_probs=232.6
Q ss_pred EEEEecCCCCccEEEEEEcCCCC---EEEEEeCCCeEEEEeCCCCce--EEEEeccCCCEEEEEEcCCCCEEEEEeCCCc
Q 005096 135 FVHTSLNKNRCSINRVLWTPTGR---RLITGSQSGEFTLWNGQSFNF--EMILQAHDHAIRSMVWSHNDNWMVSGDDGGA 209 (715)
Q Consensus 135 ~~~~~l~~H~~~I~~l~~spdg~---~Latgs~dg~I~Iwd~~~~~~--~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~ 209 (715)
.+.+++.+|..+|+|+.|-++.+ ++++|+.|+.|++|.++.... +..+.+|. +.++++........+.+.|+.
T Consensus 45 ~i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~~--~~~~cv~a~~~~~~~~~ad~~ 122 (764)
T KOG1063|consen 45 LIVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQGHC--KECVCVVARSSVMTCKAADGT 122 (764)
T ss_pred eeEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeecCcc--eeEEEEEeeeeEEEeeccCce
Confidence 45678999999999999999887 899999999999999884433 34445544 445555433333333368999
Q ss_pred EEEEeCCCCc--eeeeecCCCCC--eEEEEEecCC-CE-EEEEECCCcEEEEECC--CCeeEEEecccCCceEEEEEcCC
Q 005096 210 IKYWQNNMNN--VKANKSAHKES--VRDLSFCRTD-LK-FCSCSDDTTVKVWDFA--RCQEERSLTGHGWDVKSVDWHPT 281 (715)
Q Consensus 210 I~iwd~~~~~--~~~~~~~h~~~--I~~l~~spd~-~~-Las~s~Dg~V~iwdl~--~~~~~~~l~~~~~~I~si~~spd 281 (715)
+.+||.+..+ +...+...... -.|+++.++. .+ ++.|+.+..|.++.-. +.+.+..+.+|.+.|.+|+|...
T Consensus 123 v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~ 202 (764)
T KOG1063|consen 123 VSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARL 202 (764)
T ss_pred EEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhcc
Confidence 9999995555 22222222222 2355555533 33 4556667777777643 34667888999999999999875
Q ss_pred CC---EEEEEeCCCcEEEEECCCCc---------------------eeEE----------eccCCCceEEEEEcCCCCEE
Q 005096 282 KS---LLVSGGKDSLVKLWDAKSGR---------------------ELCS----------FHGHKNMVLCVKWNQNGNWV 327 (715)
Q Consensus 282 g~---~L~sgs~Dg~I~iwDl~s~~---------------------~~~~----------~~~~~~~I~sl~~spdg~~L 327 (715)
+. +|++++.|..||||.+.-+. .+.. +.+|.++|.++.|++.+..|
T Consensus 203 ~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~L 282 (764)
T KOG1063|consen 203 GGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDL 282 (764)
T ss_pred CCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhh
Confidence 44 88999999999999764221 0111 13899999999999999999
Q ss_pred EEEECCCeEEEEECCCC--eEEE-----EeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCC--ceEEEeeccC
Q 005096 328 LTASKDQIIKLYDIRAM--KELE-----SFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHET--PQVEIHNVHD 398 (715)
Q Consensus 328 asgs~dg~I~iwDl~t~--~~~~-----~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~--~~~~~~~~h~ 398 (715)
++++.|.++.||.-.+. --+. ...+.........|++ +++.|++-+..|..++|...... .......+|.
T Consensus 283 LSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~-n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~ 361 (764)
T KOG1063|consen 283 LSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSP-NSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHV 361 (764)
T ss_pred eecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcC-CCCEEEEecccCcEEEEeccCccceeecccccccc
Confidence 99999999999976543 2222 2223445688999999 88999999999999999832221 2234567899
Q ss_pred CCEEEEEEcCCCCEEEEEECCCeEEEEecCCCCCcccccccccCCccccceeeEEee
Q 005096 399 NTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGDTARDKFNMGQNQGYGEQNAVFAG 455 (715)
Q Consensus 399 ~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 455 (715)
+.|.+++|++.|.+|++++.|-+-|||-.. ..+..++++.+..++||+..+..+..
T Consensus 362 ~~V~dv~W~psGeflLsvs~DQTTRlFa~w-g~q~~wHEiaRPQiHGyDl~c~~~vn 417 (764)
T KOG1063|consen 362 DGVKDVDWDPSGEFLLSVSLDQTTRLFARW-GRQQEWHEIARPQIHGYDLTCLSFVN 417 (764)
T ss_pred ccceeeeecCCCCEEEEeccccceeeeccc-ccccceeeecccccccccceeeehcc
Confidence 999999999999999999999999999876 33444888888999999887776665
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.4e-22 Score=207.64 Aligned_cols=270 Identities=15% Similarity=0.200 Sum_probs=215.1
Q ss_pred EEeCCCeEEEEeCCCCceEEEEeccC--CCEEEEEEcCCCCEE-EEEeCCCcEEEEeCCCC--ceeeeecCCCCCeEEEE
Q 005096 161 TGSQSGEFTLWNGQSFNFEMILQAHD--HAIRSMVWSHNDNWM-VSGDDGGAIKYWQNNMN--NVKANKSAHKESVRDLS 235 (715)
Q Consensus 161 tgs~dg~I~Iwd~~~~~~~~~l~~h~--~~V~~l~~spdg~~L-~tgs~dg~I~iwd~~~~--~~~~~~~~h~~~I~~l~ 235 (715)
+++...+++|||....+....+..|+ -.+.+++|+....++ ++.+.|..|++|.-+.. ++...-+...+.-.|++
T Consensus 7 ~aS~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~ 86 (673)
T KOG4378|consen 7 VASTGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVA 86 (673)
T ss_pred eeccCCceEEeecccccCccccccCCCCCcceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccchHHHHh
Confidence 33334469999988776665555443 348999998765432 34456788999965433 23222233333455566
Q ss_pred EecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccC-CCc
Q 005096 236 FCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGH-KNM 314 (715)
Q Consensus 236 ~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~-~~~ 314 (715)
......++++++..++|+|||++...+.+.+++|...|+++.++-.+.+|++++..|.|.|..+.++.....|... ...
T Consensus 87 ~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqs 166 (673)
T KOG4378|consen 87 CASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQS 166 (673)
T ss_pred hhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCe
Confidence 5566689999999999999999987788889999999999999999999999999999999999998877777644 445
Q ss_pred eEEEEEcCCCCE-EEEEECCCeEEEEECCCCeEEEEe-ecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEE
Q 005096 315 VLCVKWNQNGNW-VLTASKDQIIKLYDIRAMKELESF-RGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVE 392 (715)
Q Consensus 315 I~sl~~spdg~~-Lasgs~dg~I~iwDl~t~~~~~~~-~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~ 392 (715)
|+-+.|++..+. |.+++.+|.|.+||+.....+..+ +.|......|+|+|.+..+|++.+.|..|.+||++.......
T Consensus 167 vRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~ 246 (673)
T KOG4378|consen 167 VRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDR 246 (673)
T ss_pred EEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccce
Confidence 678999997665 557889999999999877766554 579999999999999999999999999999999997776666
Q ss_pred EeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCCCCC
Q 005096 393 IHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGD 432 (715)
Q Consensus 393 ~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~~ 432 (715)
+.. +.+.+.++|.++|.+|++|+..|.|..||+.....
T Consensus 247 l~y--~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~ 284 (673)
T KOG4378|consen 247 LTY--SHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKA 284 (673)
T ss_pred eee--cCCcceeeecCCceEEEeecCCceEEEEecccCCC
Confidence 665 44889999999999999999999999999965544
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.2e-21 Score=195.05 Aligned_cols=291 Identities=21% Similarity=0.307 Sum_probs=224.0
Q ss_pred eEEEEecCCCCccEEEEEEcC----CC-CEEEEEeCCCeEEEEeCCCCceEEEEe-----ccCCCEEEEEEcCCC----C
Q 005096 134 KFVHTSLNKNRCSINRVLWTP----TG-RRLITGSQSGEFTLWNGQSFNFEMILQ-----AHDHAIRSMVWSHND----N 199 (715)
Q Consensus 134 ~~~~~~l~~H~~~I~~l~~sp----dg-~~Latgs~dg~I~Iwd~~~~~~~~~l~-----~h~~~V~~l~~spdg----~ 199 (715)
++.......|+..|..++|+. +. ..+++++. ..+.||+......++.+. .|++....++|+-|. -
T Consensus 28 k~t~~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p 106 (385)
T KOG1034|consen 28 KYTNHLKEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNP 106 (385)
T ss_pred EeeeehhccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCe
Confidence 444556778999999999985 22 34555554 468888865433233322 367788899997653 3
Q ss_pred EEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCC-CEEEEEECCCcEEEEECCCCeeEEEe---cccCCceEE
Q 005096 200 WMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTD-LKFCSCSDDTTVKVWDFARCQEERSL---TGHGWDVKS 275 (715)
Q Consensus 200 ~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~-~~Las~s~Dg~V~iwdl~~~~~~~~l---~~~~~~I~s 275 (715)
+||+++.-|.|+|.|+.++++...+.+|...|+.|.++|+. ++|++++.|.+|++||+.+..++..+ .+|.+.|.+
T Consensus 107 ~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLS 186 (385)
T KOG1034|consen 107 FLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLS 186 (385)
T ss_pred eEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEE
Confidence 78888999999999999999999999999999999999976 68899999999999999999998887 468999999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCce------eE----------------------EeccCCCceEEEEEcCCCCEE
Q 005096 276 VDWHPTKSLLVSGGKDSLVKLWDAKSGRE------LC----------------------SFHGHKNMVLCVKWNQNGNWV 327 (715)
Q Consensus 276 i~~spdg~~L~sgs~Dg~I~iwDl~s~~~------~~----------------------~~~~~~~~I~sl~~spdg~~L 327 (715)
++|+.++.+|++++.|..|++|++...+. .. +...|...|.|+.|- |+++
T Consensus 187 vD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~i 264 (385)
T KOG1034|consen 187 VDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFI 264 (385)
T ss_pred EEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhhe
Confidence 99999999999999999999999974211 00 112355666777775 6889
Q ss_pred EEEECCCeEEEEECC-CC-------------eEEEEeecCCCCeEEEEEccC-CCCEEEEEeCCCcEEEEEcCCCCceEE
Q 005096 328 LTASKDQIIKLYDIR-AM-------------KELESFRGHRKDVTALAWHPF-HEEYFVSGSLDGSIFHWLVGHETPQVE 392 (715)
Q Consensus 328 asgs~dg~I~iwDl~-t~-------------~~~~~~~~h~~~V~~l~~sp~-~~~~l~sgs~DG~I~iwd~~~~~~~~~ 392 (715)
++-+-++.|..|..- -. ..+.++......|..|.|.-+ -.++||.|...|.|++||++.......
T Consensus 265 lSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ 344 (385)
T KOG1034|consen 265 LSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKC 344 (385)
T ss_pred eecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccC
Confidence 998889999999872 11 123444555556666655431 467899999999999999987665321
Q ss_pred ---EeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEec
Q 005096 393 ---IHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCR 427 (715)
Q Consensus 393 ---~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl 427 (715)
........|...+|+.|+.+|+..++|++|.-||.
T Consensus 345 ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 345 TTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred ceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence 22223457999999999999999999999999986
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.5e-21 Score=199.35 Aligned_cols=290 Identities=19% Similarity=0.314 Sum_probs=224.1
Q ss_pred CCccEEEEEEcCCCC-EEEEEeCCCeEEEEeCCCC---------ceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEE
Q 005096 143 NRCSINRVLWTPTGR-RLITGSQSGEFTLWNGQSF---------NFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKY 212 (715)
Q Consensus 143 H~~~I~~l~~spdg~-~Latgs~dg~I~Iwd~~~~---------~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~i 212 (715)
...+|.++.|..+.. +|+||+.|..|+||.++.. +....+..|...|++|.|+++|++|++|+++|.|.+
T Consensus 12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~l 91 (434)
T KOG1009|consen 12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFL 91 (434)
T ss_pred CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEE
Confidence 456899999998776 9999999999999975532 234567789999999999999999999999999999
Q ss_pred EeCC--------C--------CceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEE
Q 005096 213 WQNN--------M--------NNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSV 276 (715)
Q Consensus 213 wd~~--------~--------~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si 276 (715)
|... + ......+.+|...|..++|++|+.++++++.|+.+++||+..+..+..+..|...+..+
T Consensus 92 Wk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgv 171 (434)
T KOG1009|consen 92 WKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGV 171 (434)
T ss_pred EEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeecccccccccee
Confidence 9755 2 12445567899999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCceeEEec----------c---------C----CCceEEEEEcCCCCEEEEEE--
Q 005096 277 DWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFH----------G---------H----KNMVLCVKWNQNGNWVLTAS-- 331 (715)
Q Consensus 277 ~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~----------~---------~----~~~I~sl~~spdg~~Lasgs-- 331 (715)
+|.|-+.++++-+.|...+++++...+.+.... . | ..-...++|+|||.+|++.+
T Consensus 172 awDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~ 251 (434)
T KOG1009|consen 172 AWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGL 251 (434)
T ss_pred ecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccce
Confidence 999999999999999877777765433322111 0 1 12245688999999998754
Q ss_pred --CCC-----eEEEEECCCC-eEEEEeecCCCCeEEEEEccC-----------------CCCEEEEEeCCCcEEEEEcCC
Q 005096 332 --KDQ-----IIKLYDIRAM-KELESFRGHRKDVTALAWHPF-----------------HEEYFVSGSLDGSIFHWLVGH 386 (715)
Q Consensus 332 --~dg-----~I~iwDl~t~-~~~~~~~~h~~~V~~l~~sp~-----------------~~~~l~sgs~DG~I~iwd~~~ 386 (715)
.++ ..++|+-... +.+..+.+....+..+.|+|. .+..++.++ ...|+|||..+
T Consensus 252 ~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt-~~svyvydtq~ 330 (434)
T KOG1009|consen 252 FKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIAT-KNSVYVYDTQT 330 (434)
T ss_pred eeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEee-cceEEEecccc
Confidence 122 2345543322 223444444445555544431 223445555 45899999999
Q ss_pred CCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCCCCCc
Q 005096 387 ETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGDT 433 (715)
Q Consensus 387 ~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~~~ 433 (715)
......+...|-..|++++|+.||..|+..|.||.+.+-.++..+..
T Consensus 331 ~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~elg 377 (434)
T KOG1009|consen 331 LEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWELG 377 (434)
T ss_pred ccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEEEEEcchhcc
Confidence 88888888899999999999999999999999999988877654443
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.7e-22 Score=199.56 Aligned_cols=245 Identities=25% Similarity=0.465 Sum_probs=193.6
Q ss_pred EEecCCCCccEEEEEEcCCCC--EEEEEeCCCeEEEEeCCC----------------CceEEEEeccCCCEEEEEEcCCC
Q 005096 137 HTSLNKNRCSINRVLWTPTGR--RLITGSQSGEFTLWNGQS----------------FNFEMILQAHDHAIRSMVWSHND 198 (715)
Q Consensus 137 ~~~l~~H~~~I~~l~~spdg~--~Latgs~dg~I~Iwd~~~----------------~~~~~~l~~h~~~V~~l~~spdg 198 (715)
....-.|.+.|+.+..++-++ +.++-+..|.|.|||+.. .+.+.++.+|...=+.|+||+-.
T Consensus 144 ~~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~ 223 (440)
T KOG0302|consen 144 EMKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIK 223 (440)
T ss_pred cccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccc
Confidence 334557888888888887654 445557789999998542 34567788899999999999843
Q ss_pred -CEEEEEeCCCcEEEEeCCCCcee---eeecCCCCCeEEEEEecCC-CEEEEEECCCcEEEEECCCCee--EEEecccCC
Q 005096 199 -NWMVSGDDGGAIKYWQNNMNNVK---ANKSAHKESVRDLSFCRTD-LKFCSCSDDTTVKVWDFARCQE--ERSLTGHGW 271 (715)
Q Consensus 199 -~~L~tgs~dg~I~iwd~~~~~~~---~~~~~h~~~I~~l~~spd~-~~Las~s~Dg~V~iwdl~~~~~--~~~l~~~~~ 271 (715)
..|++|..-+.|++|...++.-. .-+.+|+..|.+|+|+|.. ..|++|+.||+|+|||++.+.. ....+.|..
T Consensus 224 ~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~s 303 (440)
T KOG0302|consen 224 TGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNS 303 (440)
T ss_pred ccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCC
Confidence 35888888899999998876432 2346799999999999954 6789999999999999988722 223378999
Q ss_pred ceEEEEEcCCCCEEEEEeCCCcEEEEECCC---CceeEEeccCCCceEEEEEcC-CCCEEEEEECCCeEEEEECCCCeE-
Q 005096 272 DVKSVDWHPTKSLLVSGGKDSLVKLWDAKS---GRELCSFHGHKNMVLCVKWNQ-NGNWVLTASKDQIIKLYDIRAMKE- 346 (715)
Q Consensus 272 ~I~si~~spdg~~L~sgs~Dg~I~iwDl~s---~~~~~~~~~~~~~I~sl~~sp-dg~~Lasgs~dg~I~iwDl~t~~~- 346 (715)
.|+.|.|+.+..+|++|++||+++|||+|. ++.+..|+-|+..|+||.|+| +...|++++.|..|.|||+.....
T Consensus 304 DVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ 383 (440)
T KOG0302|consen 304 DVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADE 383 (440)
T ss_pred ceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCCh
Confidence 999999999888999999999999999985 567889999999999999999 456788888999999999864221
Q ss_pred -----------------EEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEE
Q 005096 347 -----------------LESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFH 381 (715)
Q Consensus 347 -----------------~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~i 381 (715)
+.-+......|..+.|++....+|++.+.||.-.+
T Consensus 384 ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGfnVf 435 (440)
T KOG0302|consen 384 EEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGFNVF 435 (440)
T ss_pred hhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccceeEE
Confidence 11111234568889999988899999999985443
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=9e-21 Score=204.46 Aligned_cols=244 Identities=18% Similarity=0.282 Sum_probs=206.6
Q ss_pred cCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCce-eeeec-CCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCee
Q 005096 185 HDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNV-KANKS-AHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQE 262 (715)
Q Consensus 185 h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~-~~~~~-~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~ 262 (715)
....|.+++|+.+.+.||++-.||.|.||++..+-. ...+. .....|.+|+|+ ++..|++.+.+|.|.-||+.+.+.
T Consensus 24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~lk~ 102 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTLKQ 102 (691)
T ss_pred eccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEecccCce
Confidence 457899999999999999999999999999987633 33333 345689999999 667789999999999999999999
Q ss_pred EEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEE--eccCCCceEEEEEcCCCCEEEEEECCCeEEEEE
Q 005096 263 ERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCS--FHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYD 340 (715)
Q Consensus 263 ~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~--~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwD 340 (715)
+..+....+.|++++.++.+..+++||+||.+++++...++.... +...++.|.+++|++++..|+.|+.||.|++||
T Consensus 103 ~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd 182 (691)
T KOG2048|consen 103 KYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWD 182 (691)
T ss_pred eEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEE
Confidence 999999999999999999999999999999888888887765543 344568899999999999999999999999999
Q ss_pred CCCCeEEEEee-----c---CCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCE
Q 005096 341 IRAMKELESFR-----G---HRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYL 412 (715)
Q Consensus 341 l~t~~~~~~~~-----~---h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 412 (715)
..++..+.... . ...-|.++.+- ....|++|...|+|.+||...+...... ..|...|.+++.+.++..
T Consensus 183 ~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~L--rd~tI~sgDS~G~V~FWd~~~gTLiqS~-~~h~adVl~Lav~~~~d~ 259 (691)
T KOG2048|consen 183 VKSGQTLHIITMQLDRLSKREPTIVWSVLFL--RDSTIASGDSAGTVTFWDSIFGTLIQSH-SCHDADVLALAVADNEDR 259 (691)
T ss_pred cCCCceEEEeeecccccccCCceEEEEEEEe--ecCcEEEecCCceEEEEcccCcchhhhh-hhhhcceeEEEEcCCCCe
Confidence 99988876322 1 22346777776 4788999999999999999877655444 458999999999999999
Q ss_pred EEEEECCCeEEEEecCCCCC
Q 005096 413 LCSGSNDHTTKFWCRNRPGD 432 (715)
Q Consensus 413 L~sgs~Dg~I~iWdl~~~~~ 432 (715)
|++++.|+.|..|..+..+.
T Consensus 260 vfsaGvd~~ii~~~~~~~~~ 279 (691)
T KOG2048|consen 260 VFSAGVDPKIIQYSLTTNKS 279 (691)
T ss_pred EEEccCCCceEEEEecCCcc
Confidence 99999999999999876655
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.1e-19 Score=196.67 Aligned_cols=291 Identities=27% Similarity=0.520 Sum_probs=240.4
Q ss_pred ecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc-eEEEEeccC-CCEEEEEE-cCCCC-EEEEEeC-CCcEEEE
Q 005096 139 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFN-FEMILQAHD-HAIRSMVW-SHNDN-WMVSGDD-GGAIKYW 213 (715)
Q Consensus 139 ~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~-~~~~l~~h~-~~V~~l~~-spdg~-~L~tgs~-dg~I~iw 213 (715)
.+..|...|.++.|..++..++.++.|+.+.+|+..... ....+..+. ..+..+.+ +.++. +++..+. |+.+.+|
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 139 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLW 139 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEE
Confidence 467899999999999999999999999999999998886 666666644 37777777 77777 5555444 8999999
Q ss_pred eCCC-CceeeeecCCCCCeEEEEEecCCCEEEEEEC-CCcEEEEECCCCeeEEEecccCCceEEEEEcCCCC-EEEEEeC
Q 005096 214 QNNM-NNVKANKSAHKESVRDLSFCRTDLKFCSCSD-DTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKS-LLVSGGK 290 (715)
Q Consensus 214 d~~~-~~~~~~~~~h~~~I~~l~~spd~~~Las~s~-Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~-~L~sgs~ 290 (715)
+... ......+..|...|.+++|++++..+++++. |+.+++|++.....+..+..|...|.+++|++++. ++++++.
T Consensus 140 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 219 (466)
T COG2319 140 DLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSS 219 (466)
T ss_pred EecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecC
Confidence 9998 7788888899999999999999998888885 99999999998888888888999999999999988 5555589
Q ss_pred CCcEEEEECCCCceeE-EeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeE-EEEeecCCCCeEEEEEccCCCC
Q 005096 291 DSLVKLWDAKSGRELC-SFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKE-LESFRGHRKDVTALAWHPFHEE 368 (715)
Q Consensus 291 Dg~I~iwDl~s~~~~~-~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~-~~~~~~h~~~V~~l~~sp~~~~ 368 (715)
|+.|++||...+..+. .+..|...+ ...|++++.++++++.|+.+++||++.... +..+..|...|.++.|++ ++.
T Consensus 220 d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~ 297 (466)
T COG2319 220 DGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSP-DGK 297 (466)
T ss_pred CCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECC-CCC
Confidence 9999999999887777 577777765 448999998899999999999999987665 455567889999999999 677
Q ss_pred EEEEEeCCCcEEEEEcCCCCceEEEe-eccCCCEEEEEEcCCCCEEEEE-ECCCeEEEEecCCCC
Q 005096 369 YFVSGSLDGSIFHWLVGHETPQVEIH-NVHDNTVWDLAWHPIGYLLCSG-SNDHTTKFWCRNRPG 431 (715)
Q Consensus 369 ~l~sgs~DG~I~iwd~~~~~~~~~~~-~~h~~~V~~l~~spdg~~L~sg-s~Dg~I~iWdl~~~~ 431 (715)
.+++++.|+.+.+||........... ..|...|..+.|.+++..++.+ ..|+.+.+|++....
T Consensus 298 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 362 (466)
T COG2319 298 LLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK 362 (466)
T ss_pred EEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc
Confidence 77778888889999887776555544 4577779999994232455555 688999999997765
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1e-22 Score=231.05 Aligned_cols=282 Identities=21% Similarity=0.403 Sum_probs=221.1
Q ss_pred EEEEEcCCCC-EEEEE----------eCCCeEEEEeCCCC--c----eEEEEeccCCCEEEEEEcCCCCE----EEEEeC
Q 005096 148 NRVLWTPTGR-RLITG----------SQSGEFTLWNGQSF--N----FEMILQAHDHAIRSMVWSHNDNW----MVSGDD 206 (715)
Q Consensus 148 ~~l~~spdg~-~Latg----------s~dg~I~Iwd~~~~--~----~~~~l~~h~~~V~~l~~spdg~~----L~tgs~ 206 (715)
..++|+|++. +|++| +.+.++.||.+... + .+..+. .....+.++|.+.+.. |+.|.+
T Consensus 10 a~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~-s~~rF~kL~W~~~g~~~~GlIaGG~e 88 (1049)
T KOG0307|consen 10 ATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQ-SSNRFNKLAWGSYGSHSHGLIAGGLE 88 (1049)
T ss_pred ceEEecCCCchhhHHHhhhhccccccccccccceeeecccCcccccccccccc-ccccceeeeecccCCCccceeecccc
Confidence 4578999886 55554 23455666654322 2 122221 3467889999987765 888999
Q ss_pred CCcEEEEeCCC------CceeeeecCCCCCeEEEEEecCCC-EEEEEECCCcEEEEECCCCeeEEEec--ccCCceEEEE
Q 005096 207 GGAIKYWQNNM------NNVKANKSAHKESVRDLSFCRTDL-KFCSCSDDTTVKVWDFARCQEERSLT--GHGWDVKSVD 277 (715)
Q Consensus 207 dg~I~iwd~~~------~~~~~~~~~h~~~I~~l~~spd~~-~Las~s~Dg~V~iwdl~~~~~~~~l~--~~~~~I~si~ 277 (715)
||.|.+||... ..++..+..|.+.|..|.|++... .||+|+.||.|.|||+++.+.-..+. ...+.|.+|+
T Consensus 89 dG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~ls 168 (1049)
T KOG0307|consen 89 DGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLS 168 (1049)
T ss_pred CCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEec
Confidence 99999999654 235666788999999999999665 99999999999999998755444432 2457899999
Q ss_pred EcCCC-CEEEEEeCCCcEEEEECCCCceeEEeccCCC--ceEEEEEcCCC-CEEEEEECCC---eEEEEECCCC-eEEEE
Q 005096 278 WHPTK-SLLVSGGKDSLVKLWDAKSGRELCSFHGHKN--MVLCVKWNQNG-NWVLTASKDQ---IIKLYDIRAM-KELES 349 (715)
Q Consensus 278 ~spdg-~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~--~I~sl~~spdg-~~Lasgs~dg---~I~iwDl~t~-~~~~~ 349 (715)
|+..- .+|++++.+|.+.|||+|..+.+..+..+.. .+..|+|+|+. ..|++++.|. .|.+||+|.- ..+++
T Consensus 169 WNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~ 248 (1049)
T KOG0307|consen 169 WNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKI 248 (1049)
T ss_pred cchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhh
Confidence 99754 4788899999999999999888887765544 47889999976 4566666554 7999999864 45788
Q ss_pred eecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCC-EEEEEECCCeEEEEecC
Q 005096 350 FRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGY-LLCSGSNDHTTKFWCRN 428 (715)
Q Consensus 350 ~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~-~L~sgs~Dg~I~iWdl~ 428 (715)
+.+|...|.++.|++.|.++|++++.|++|.+|+.++++.+..+-. ..+.+..+.|++..- +|++++-||.|.||.+.
T Consensus 249 ~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~-~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~ 327 (1049)
T KOG0307|consen 249 LEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPA-QGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQ 327 (1049)
T ss_pred hcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCC-CCcceeeeeecCCCcchhhhheeccceeeeeee
Confidence 8999999999999998889999999999999999999877666654 577899999999764 88899999999999986
Q ss_pred CCC
Q 005096 429 RPG 431 (715)
Q Consensus 429 ~~~ 431 (715)
...
T Consensus 328 ~~~ 330 (1049)
T KOG0307|consen 328 GTD 330 (1049)
T ss_pred cCC
Confidence 554
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=4e-21 Score=190.43 Aligned_cols=283 Identities=14% Similarity=0.188 Sum_probs=207.9
Q ss_pred EEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceee----eecCCCCCeEEEEEecCCCEEEE-EECCCcEEE
Q 005096 180 MILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKA----NKSAHKESVRDLSFCRTDLKFCS-CSDDTTVKV 254 (715)
Q Consensus 180 ~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~----~~~~h~~~I~~l~~spd~~~Las-~s~Dg~V~i 254 (715)
..+++|.+.|++++|+.||++|++++.|++|+||+++...... ......+.-+.+.|.+|-+.++. +-...+|++
T Consensus 80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~v 159 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCV 159 (420)
T ss_pred hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEE
Confidence 3467999999999999999999999999999999987643211 11122345678999999876554 445668999
Q ss_pred EECCCCee---EE---------EecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCceEEEEEcC
Q 005096 255 WDFARCQE---ER---------SLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQ 322 (715)
Q Consensus 255 wdl~~~~~---~~---------~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~sp 322 (715)
|.+...+. .. .-+.|.-.|.++-...++++|.+++.|..|.|||++ |+.+..+......-+..+.||
T Consensus 160 yk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP 238 (420)
T KOG2096|consen 160 YKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSP 238 (420)
T ss_pred EEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCC
Confidence 98743211 11 112355566777777788899999999999999999 888988887777788899999
Q ss_pred CCCEEEEEECCCeEEEEECC---CC-----eEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCc-----
Q 005096 323 NGNWVLTASKDQIIKLYDIR---AM-----KELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETP----- 389 (715)
Q Consensus 323 dg~~Lasgs~dg~I~iwDl~---t~-----~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~----- 389 (715)
+|++|++++..-.|+||.+- .| +.+..+++|...|..++|++ +...+++.+.||+++|||.+-...
T Consensus 239 ~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn-~S~r~vtvSkDG~wriwdtdVrY~~~qDp 317 (420)
T KOG2096|consen 239 DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSN-SSTRAVTVSKDGKWRIWDTDVRYEAGQDP 317 (420)
T ss_pred CCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCC-CcceeEEEecCCcEEEeeccceEecCCCc
Confidence 99999999999999999863 22 34677899999999999999 889999999999999999853211
Q ss_pred -eEE----EeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCCCCCcccccccccCCccccceeeEEeecCCCCccCC
Q 005096 390 -QVE----IHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGDTARDKFNMGQNQGYGEQNAVFAGRMPGNFPLP 464 (715)
Q Consensus 390 -~~~----~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 464 (715)
+.+ .+....+.-..|+.+|+|..|+.+. ...|++|..++.++... + . ..++.....+++..+|.+++.
T Consensus 318 k~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~--~--e--~~h~~~Is~is~~~~g~~~at 390 (420)
T KOG2096|consen 318 KILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPE--L--E--DIHSTTISSISYSSDGKYIAT 390 (420)
T ss_pred hHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEcccCccchh--H--H--HhhcCceeeEEecCCCcEEee
Confidence 111 1112233445899999999888765 56799998766333221 1 1 223345566677777888877
Q ss_pred CCCCCCC
Q 005096 465 EGPTTPG 471 (715)
Q Consensus 465 ~~~~~~g 471 (715)
++.+-+.
T Consensus 391 cGdr~vr 397 (420)
T KOG2096|consen 391 CGDRYVR 397 (420)
T ss_pred ecceeee
Confidence 7665444
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.4e-21 Score=207.84 Aligned_cols=121 Identities=11% Similarity=0.203 Sum_probs=102.4
Q ss_pred ecCCCCccEEEEEEcCC-CCEEEEEeCCCeEEEEeCCCCce------EEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEE
Q 005096 139 SLNKNRCSINRVLWTPT-GRRLITGSQSGEFTLWNGQSFNF------EMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIK 211 (715)
Q Consensus 139 ~l~~H~~~I~~l~~spd-g~~Latgs~dg~I~Iwd~~~~~~------~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~ 211 (715)
.|.+|.+.|+.+.|++- ..+||+|+.|..|+||.+..+.. ...+...+-.|.|+.|++..+-|+..+..|+++
T Consensus 74 ~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~a~g~v~ 153 (1012)
T KOG1445|consen 74 ILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILASGAHGSVY 153 (1012)
T ss_pred eeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEeccCceEE
Confidence 46789999999999994 45788999999999999874321 222334455688999999876666666779999
Q ss_pred EEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCC
Q 005096 212 YWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFAR 259 (715)
Q Consensus 212 iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~ 259 (715)
|||+.+.+....+..|.+.|.+..|+.||++|++++.|..|+|||-+.
T Consensus 154 i~D~stqk~~~el~~h~d~vQSa~WseDG~llatscKdkqirifDPRa 201 (1012)
T KOG1445|consen 154 ITDISTQKTAVELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRA 201 (1012)
T ss_pred EEEcccCceeecccCCchhhhccccccCCceEeeecCCcceEEeCCcc
Confidence 999999999999999999999999999999999999999999999753
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.8e-19 Score=191.56 Aligned_cols=290 Identities=29% Similarity=0.534 Sum_probs=237.2
Q ss_pred EEEEecCCCCccEEEEEEcCCCCEEEEEeC-CCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCC-EEEEEeCCCcEEE
Q 005096 135 FVHTSLNKNRCSINRVLWTPTGRRLITGSQ-SGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDN-WMVSGDDGGAIKY 212 (715)
Q Consensus 135 ~~~~~l~~H~~~I~~l~~spdg~~Latgs~-dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~-~L~tgs~dg~I~i 212 (715)
.....+..|...|.+++|+++++++++++. |+.+++|+..+.+.+..+..|...|.+++|++++. ++++++.|+.|++
T Consensus 146 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~ 225 (466)
T COG2319 146 KLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRL 225 (466)
T ss_pred eEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEE
Confidence 345567899999999999999998988886 99999999999889999999999999999999887 5555599999999
Q ss_pred EeCCCCceee-eecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCee-EEEecccCCceEEEEEcCCCCEEEEEeC
Q 005096 213 WQNNMNNVKA-NKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQE-ERSLTGHGWDVKSVDWHPTKSLLVSGGK 290 (715)
Q Consensus 213 wd~~~~~~~~-~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~-~~~l~~~~~~I~si~~spdg~~L~sgs~ 290 (715)
||...+.... .+..|...+ ...|++++.++++++.|+.+++||+..... ...+..|...|.++.|++++..+++++.
T Consensus 226 wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 304 (466)
T COG2319 226 WDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSS 304 (466)
T ss_pred EECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeC
Confidence 9988777777 577777775 448999998899999999999999976654 4444567889999999998888888999
Q ss_pred CCcEEEEECCCCceeEEec--cCCCceEEEEEcCCCCEEEEE-ECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCC
Q 005096 291 DSLVKLWDAKSGRELCSFH--GHKNMVLCVKWNQNGNWVLTA-SKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHE 367 (715)
Q Consensus 291 Dg~I~iwDl~s~~~~~~~~--~~~~~I~sl~~spdg~~Lasg-s~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~ 367 (715)
|+.+.+||+++........ .|...+..+.|.+++..++.+ ..|+.+.+|++.............. +..+.+.. +
T Consensus 305 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~- 381 (466)
T COG2319 305 DGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSN-VLSVSFSP-D- 381 (466)
T ss_pred CCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCceeEEecCCce-EEEEEECC-C-
Confidence 9889999999887766665 677779999994232556655 6789999999988773333332222 88999998 7
Q ss_pred CEEEE-EeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCC
Q 005096 368 EYFVS-GSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNR 429 (715)
Q Consensus 368 ~~l~s-gs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~ 429 (715)
..++. +..++.+.+|+.............+ ..+..+.++.++..+++++.++.+++|++..
T Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 382 GRVVSSGSTDGTVRLWDLSTGSLLRNLDGHT-SRVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred CCEEEEecCCCceEEEecccCeeeeeccCCC-CcEEEEEECCCCcEEEEecCCCcEEEEeccC
Confidence 55555 8899999999998876655554322 6899999999999999999999999999976
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.5e-22 Score=226.76 Aligned_cols=245 Identities=20% Similarity=0.370 Sum_probs=204.8
Q ss_pred CccEEEEEEcCCCCE----EEEEeCCCeEEEEeCCC------CceEEEEeccCCCEEEEEEcCCC-CEEEEEeCCCcEEE
Q 005096 144 RCSINRVLWTPTGRR----LITGSQSGEFTLWNGQS------FNFEMILQAHDHAIRSMVWSHND-NWMVSGDDGGAIKY 212 (715)
Q Consensus 144 ~~~I~~l~~spdg~~----Latgs~dg~I~Iwd~~~------~~~~~~l~~h~~~V~~l~~spdg-~~L~tgs~dg~I~i 212 (715)
..+.++++|++.+.. ||.|.+||.|.+||... ...+..+..|++.|..+.|++.. ++|++|+.||.|.|
T Consensus 64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~i 143 (1049)
T KOG0307|consen 64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILI 143 (1049)
T ss_pred cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEE
Confidence 345678999987766 88999999999999665 23466678899999999999975 59999999999999
Q ss_pred EeCCCCceeeee--cCCCCCeEEEEEecCC-CEEEEEECCCcEEEEECCCCeeEEEecccCC--ceEEEEEcCCCC-EEE
Q 005096 213 WQNNMNNVKANK--SAHKESVRDLSFCRTD-LKFCSCSDDTTVKVWDFARCQEERSLTGHGW--DVKSVDWHPTKS-LLV 286 (715)
Q Consensus 213 wd~~~~~~~~~~--~~h~~~I~~l~~spd~-~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~--~I~si~~spdg~-~L~ 286 (715)
||++.-+.-... ....+.|.+|+|+..- ..|++++.+|++.|||++..+.+..+..+.. .+..|+|+|++. .|+
T Consensus 144 WDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~ 223 (1049)
T KOG0307|consen 144 WDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLL 223 (1049)
T ss_pred eccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeee
Confidence 999875544333 2356789999998744 5688899999999999998888877765554 477999999875 566
Q ss_pred EEeCCC---cEEEEECCC-CceeEEeccCCCceEEEEEcCCC-CEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEE
Q 005096 287 SGGKDS---LVKLWDAKS-GRELCSFHGHKNMVLCVKWNQNG-NWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALA 361 (715)
Q Consensus 287 sgs~Dg---~I~iwDl~s-~~~~~~~~~~~~~I~sl~~spdg-~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~ 361 (715)
++++|. .|.+||+|. ...++++++|...|.++.|++.+ ++|++++.|+.|.+|+.++++.+..+......+..+.
T Consensus 224 ~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~ 303 (1049)
T KOG0307|consen 224 VASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQ 303 (1049)
T ss_pred eecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeee
Confidence 666554 599999985 45677788999999999999955 8999999999999999999999999999999999999
Q ss_pred EccCCCCEEEEEeCCCcEEEEEcCCCC
Q 005096 362 WHPFHEEYFVSGSLDGSIFHWLVGHET 388 (715)
Q Consensus 362 ~sp~~~~~l~sgs~DG~I~iwd~~~~~ 388 (715)
|++.+..+|++++-||.|.||.+....
T Consensus 304 w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 304 WCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred ecCCCcchhhhheeccceeeeeeecCC
Confidence 999888899999999999999886543
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.1e-21 Score=193.66 Aligned_cols=243 Identities=21% Similarity=0.388 Sum_probs=190.7
Q ss_pred eccCCCEEEEEEcCCC--CEEEEEeCCCcEEEEeCCC----------------CceeeeecCCCCCeEEEEEecCC-CEE
Q 005096 183 QAHDHAIRSMVWSHND--NWMVSGDDGGAIKYWQNNM----------------NNVKANKSAHKESVRDLSFCRTD-LKF 243 (715)
Q Consensus 183 ~~h~~~V~~l~~spdg--~~L~tgs~dg~I~iwd~~~----------------~~~~~~~~~h~~~I~~l~~spd~-~~L 243 (715)
..|.+.|+.+..++-+ .+.++=+..|.|+||++.. .+.+.++.+|...=..|+||+-. ..|
T Consensus 148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~L 227 (440)
T KOG0302|consen 148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRL 227 (440)
T ss_pred cccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccccc
Confidence 3566777777666543 4556667889999999632 23456677888888999999832 347
Q ss_pred EEEECCCcEEEEECCCCeeE---EEecccCCceEEEEEcCCC-CEEEEEeCCCcEEEEECCCC---ceeEEeccCCCceE
Q 005096 244 CSCSDDTTVKVWDFARCQEE---RSLTGHGWDVKSVDWHPTK-SLLVSGGKDSLVKLWDAKSG---RELCSFHGHKNMVL 316 (715)
Q Consensus 244 as~s~Dg~V~iwdl~~~~~~---~~l~~~~~~I~si~~spdg-~~L~sgs~Dg~I~iwDl~s~---~~~~~~~~~~~~I~ 316 (715)
++|.--+.|++|...++.-. ..+.+|...|..|+|+|.. ..|++|+.|++|+|||+|++ .++. .+.|.+.|+
T Consensus 228 lsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~-~kAh~sDVN 306 (440)
T KOG0302|consen 228 LSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVS-TKAHNSDVN 306 (440)
T ss_pred ccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeE-eeccCCcee
Confidence 78877888999998775432 3466799999999999965 48999999999999999987 3343 378999999
Q ss_pred EEEEcCCCCEEEEEECCCeEEEEECCC---CeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCc----
Q 005096 317 CVKWNQNGNWVLTASKDQIIKLYDIRA---MKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETP---- 389 (715)
Q Consensus 317 sl~~spdg~~Lasgs~dg~I~iwDl~t---~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~---- 389 (715)
.|+|+.+..+||+|+.||+++|||+|. ++.+..|+-|...|++|.|+|.....|++++.|..|.|||+.....
T Consensus 307 VISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~ 386 (440)
T KOG0302|consen 307 VISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEI 386 (440)
T ss_pred eEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhh
Confidence 999999888999999999999999986 4568899999999999999998889999999999999999864432
Q ss_pred -----------eEEEeecc--CCCEEEEEEcCC-CCEEEEEECCCeEEEEe
Q 005096 390 -----------QVEIHNVH--DNTVWDLAWHPI-GYLLCSGSNDHTTKFWC 426 (715)
Q Consensus 390 -----------~~~~~~~h--~~~V~~l~~spd-g~~L~sgs~Dg~I~iWd 426 (715)
.-.++..| ...|..+.|++. -.+|++.+.||.-.+.-
T Consensus 387 ~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGfnVfkt 437 (440)
T KOG0302|consen 387 DQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGFNVFKT 437 (440)
T ss_pred ccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccceeEEEe
Confidence 01122234 346888999986 46788888888654443
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.6e-21 Score=204.80 Aligned_cols=272 Identities=16% Similarity=0.332 Sum_probs=222.4
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeec
Q 005096 146 SINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKS 225 (715)
Q Consensus 146 ~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~ 225 (715)
.|+.++|-|||..|+.+..| .+.|||..++.....+++|.+.|+|++|+.||+++++|+.|..|.||+-.....+. .
T Consensus 14 ci~d~afkPDGsqL~lAAg~-rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~Lk--Y 90 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGS-RLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILK--Y 90 (1081)
T ss_pred chheeEECCCCceEEEecCC-EEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccceee--e
Confidence 89999999999999888766 59999999999999999999999999999999999999999999999865444333 3
Q ss_pred CCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCcee
Q 005096 226 AHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGREL 305 (715)
Q Consensus 226 ~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~ 305 (715)
.|.+.|.|+.|+|-...|++|+-+ ..-+|..+.... ...+ ....|.+++|..||.+|+.|-.||+|.|-+.. ++..
T Consensus 91 SH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~V-~K~k-ss~R~~~CsWtnDGqylalG~~nGTIsiRNk~-gEek 166 (1081)
T KOG1538|consen 91 SHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKSV-SKHK-SSSRIICCSWTNDGQYLALGMFNGTISIRNKN-GEEK 166 (1081)
T ss_pred ccCCeeeEeecCchHHHhhhcchh-hccccChhhhhH-Hhhh-hheeEEEeeecCCCcEEEEeccCceEEeecCC-CCcc
Confidence 689999999999999999998865 477887654322 2221 34568899999999999999999999998654 4443
Q ss_pred EEec---cCCCceEEEEEcCCC-----CEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCC
Q 005096 306 CSFH---GHKNMVLCVKWNQNG-----NWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDG 377 (715)
Q Consensus 306 ~~~~---~~~~~I~sl~~spdg-----~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG 377 (715)
..+. +.++.|.+|+|+++. ..+++.....++.+|.+. |+.+..-+.-.-.-.|+.+.+ ++.+++.|+.|+
T Consensus 167 ~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~-NGEy~LiGGsdk 244 (1081)
T KOG1538|consen 167 VKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDRALNFDPCCISYFT-NGEYILLGGSDK 244 (1081)
T ss_pred eEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeecccccCCCCchhheecc-CCcEEEEccCCC
Confidence 3443 467889999999953 578888888999999886 777766555666678889988 899999999999
Q ss_pred cEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecC
Q 005096 378 SIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRN 428 (715)
Q Consensus 378 ~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~ 428 (715)
.+.+|.-+ + .........+..||.+...|++.+++.|+.||+|..|++-
T Consensus 245 ~L~~fTR~-G-vrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 245 QLSLFTRD-G-VRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLI 293 (1081)
T ss_pred ceEEEeec-C-eEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhH
Confidence 99999642 2 2223333467799999999999999999999999999864
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.6e-21 Score=197.79 Aligned_cols=245 Identities=15% Similarity=0.306 Sum_probs=205.4
Q ss_pred ecCCCCccEEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCceEEE--EeccC-CCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 005096 139 SLNKNRCSINRVLWTPTGR-RLITGSQSGEFTLWNGQSFNFEMI--LQAHD-HAIRSMVWSHNDNWMVSGDDGGAIKYWQ 214 (715)
Q Consensus 139 ~l~~H~~~I~~l~~spdg~-~Latgs~dg~I~Iwd~~~~~~~~~--l~~h~-~~V~~l~~spdg~~L~tgs~dg~I~iwd 214 (715)
++.--+.+|.+++|.++|. .+++++....++.||+.+.+..+. ..+++ ..+.....++++++|++.+..|.|.|..
T Consensus 252 S~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLh 331 (514)
T KOG2055|consen 252 SIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLH 331 (514)
T ss_pred eeeeccCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeeh
Confidence 3444577899999999999 888999999999999998776544 33333 4577888999999999999999999999
Q ss_pred CCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCC-ceEEEEEcCCCCEEEEEeCCCc
Q 005096 215 NNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGW-DVKSVDWHPTKSLLVSGGKDSL 293 (715)
Q Consensus 215 ~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~-~I~si~~spdg~~L~sgs~Dg~ 293 (715)
..+++.+..++ ..+.|.+++|+.|++.|++++.+|.|++||++...+++.+...++ .-++++.+.++.+||+|+..|.
T Consensus 332 akT~eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~Gi 410 (514)
T KOG2055|consen 332 AKTKELITSFK-IEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGI 410 (514)
T ss_pred hhhhhhhheee-eccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcce
Confidence 99998887764 467899999999999999999999999999999988888874432 2357888899999999999999
Q ss_pred EEEEECCC------CceeEEeccCCCceEEEEEcCCCCEEEEEE--CCCeEEEEECCCCeEEEEeecC---CCCeEEEEE
Q 005096 294 VKLWDAKS------GRELCSFHGHKNMVLCVKWNQNGNWVLTAS--KDQIIKLYDIRAMKELESFRGH---RKDVTALAW 362 (715)
Q Consensus 294 I~iwDl~s------~~~~~~~~~~~~~I~sl~~spdg~~Lasgs--~dg~I~iwDl~t~~~~~~~~~h---~~~V~~l~~ 362 (715)
|.|||.++ .+.+..+......|+++.|++|..+||.++ .+..+++..+-+......+... -+.|+|++|
T Consensus 411 VNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aF 490 (514)
T KOG2055|consen 411 VNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAF 490 (514)
T ss_pred EEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEe
Confidence 99999654 345666666677899999999999999887 4568999988877776666543 356899999
Q ss_pred ccCCCCEEEEEeCCCcEEEEEcC
Q 005096 363 HPFHEEYFVSGSLDGSIFHWLVG 385 (715)
Q Consensus 363 sp~~~~~l~sgs~DG~I~iwd~~ 385 (715)
+| ++.++|.|..+|+|.+|.+.
T Consensus 491 SP-~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 491 SP-NSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred cC-CCceEEeecCCCceeeEeec
Confidence 99 89999999999999999874
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.8e-20 Score=184.00 Aligned_cols=282 Identities=19% Similarity=0.345 Sum_probs=216.0
Q ss_pred CCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC------------ceEEEEe-ccCCCEEEEEEc-------CCCCEEE
Q 005096 143 NRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSF------------NFEMILQ-AHDHAIRSMVWS-------HNDNWMV 202 (715)
Q Consensus 143 H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~------------~~~~~l~-~h~~~V~~l~~s-------pdg~~L~ 202 (715)
-..-...+.|+|||..|++-+.|..+.+|++-.. +...+++ .....|...+|- |+.++++
T Consensus 48 p~nf~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a 127 (406)
T KOG2919|consen 48 PLNFLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFA 127 (406)
T ss_pred chhhhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceee
Confidence 3444667899999999999999999999985421 1111222 123567787875 4678899
Q ss_pred EEeCCCcEEEEeCCCCceeeeecC--CCC---CeEEEEEecCCCEEEEEECCCcEEEEEC-CCCeeEE---Ee----ccc
Q 005096 203 SGDDGGAIKYWQNNMNNVKANKSA--HKE---SVRDLSFCRTDLKFCSCSDDTTVKVWDF-ARCQEER---SL----TGH 269 (715)
Q Consensus 203 tgs~dg~I~iwd~~~~~~~~~~~~--h~~---~I~~l~~spd~~~Las~s~Dg~V~iwdl-~~~~~~~---~l----~~~ 269 (715)
+.+.+.-|++||.-++++...+.. |.+ ...+|+|++||..|++|. ..+|+|||+ +.+.... ++ .+.
T Consensus 128 ~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~~k~gq 206 (406)
T KOG2919|consen 128 VSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKGKFGQ 206 (406)
T ss_pred eccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhhhcccccc
Confidence 999999999999999988877643 333 456899999999998765 568999999 3333221 11 123
Q ss_pred CCceEEEEEcCCCC-EEEEEeCCCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEE-CCCeEEEEECCCCe-E
Q 005096 270 GWDVKSVDWHPTKS-LLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTAS-KDQIIKLYDIRAMK-E 346 (715)
Q Consensus 270 ~~~I~si~~spdg~-~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs-~dg~I~iwDl~t~~-~ 346 (715)
.+.|.+++|+|... .+++++....+-||.-...+.+..+-+|.+.|+.+.|.++|+.|++|+ .|-.|..||+|..+ .
T Consensus 207 ~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~p 286 (406)
T KOG2919|consen 207 KGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDP 286 (406)
T ss_pred cceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccch
Confidence 56789999999654 899999999999998888899999999999999999999999999988 46789999999644 4
Q ss_pred EEEeecCCC-CeEEEEE--ccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEE
Q 005096 347 LESFRGHRK-DVTALAW--HPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTK 423 (715)
Q Consensus 347 ~~~~~~h~~-~V~~l~~--sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~ 423 (715)
+..+..|.. .-..|.| .+ .+++|++|+.||.|++||++.-.........++..|+.++++|.-.+++|++.. +
T Consensus 287 v~~L~rhv~~TNQRI~FDld~-~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGq---r 362 (406)
T KOG2919|consen 287 VYALERHVGDTNQRILFDLDP-KGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQ---R 362 (406)
T ss_pred hhhhhhhccCccceEEEecCC-CCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccCc---e
Confidence 555665555 3333444 45 788999999999999999988666566666789999999999998888888754 3
Q ss_pred EEecCC
Q 005096 424 FWCRNR 429 (715)
Q Consensus 424 iWdl~~ 429 (715)
+|...+
T Consensus 363 ~f~~~~ 368 (406)
T KOG2919|consen 363 IFKYPK 368 (406)
T ss_pred eecCCC
Confidence 444433
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.5e-21 Score=204.49 Aligned_cols=250 Identities=16% Similarity=0.287 Sum_probs=195.9
Q ss_pred ecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEE--EeccCCCEEEEEEcCCC-CEEEEEeCCCcEEEEeC
Q 005096 139 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMI--LQAHDHAIRSMVWSHND-NWMVSGDDGGAIKYWQN 215 (715)
Q Consensus 139 ~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~--l~~h~~~V~~l~~spdg-~~L~tgs~dg~I~iwd~ 215 (715)
....|...|..+.|.+....|++++.|.++++||+++.+++.. +.+|.+.|.+++|.+++ ..|++|+.||.|.|||+
T Consensus 95 ~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~ 174 (720)
T KOG0321|consen 95 KPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDC 174 (720)
T ss_pred ccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEE
Confidence 3457999999999999778899999999999999999888776 89999999999999976 56789999999999996
Q ss_pred CCCce---------------------------eeeecCCCCCeEE---EEEecCCCEEEEEEC-CCcEEEEECCCCeeEE
Q 005096 216 NMNNV---------------------------KANKSAHKESVRD---LSFCRTDLKFCSCSD-DTTVKVWDFARCQEER 264 (715)
Q Consensus 216 ~~~~~---------------------------~~~~~~h~~~I~~---l~~spd~~~Las~s~-Dg~V~iwdl~~~~~~~ 264 (715)
..... +.....+...|.. +.+..|+..||+++. |+.|+||||++.....
T Consensus 175 R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~ 254 (720)
T KOG0321|consen 175 RCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAY 254 (720)
T ss_pred eccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeeccccccc
Confidence 43220 0111233444555 566678899999888 9999999997654432
Q ss_pred Ee--------ccc---CCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCc--eeEEeccCCC--ceEEEEEcCCCCEEEE
Q 005096 265 SL--------TGH---GWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGR--ELCSFHGHKN--MVLCVKWNQNGNWVLT 329 (715)
Q Consensus 265 ~l--------~~~---~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~--~~~~~~~~~~--~I~sl~~spdg~~Las 329 (715)
.. ..+ ...+.++..+..|.+|++.+.|+.|++||+.+.. .+..+.++.. ....-..++|+.+|++
T Consensus 255 r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~S 334 (720)
T KOG0321|consen 255 RQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLS 334 (720)
T ss_pred ccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEec
Confidence 21 122 3457888888889999999999999999998643 3333433221 1223346889999999
Q ss_pred EECCCeEEEEECCCCeE-EEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCC
Q 005096 330 ASKDQIIKLYDIRAMKE-LESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHET 388 (715)
Q Consensus 330 gs~dg~I~iwDl~t~~~-~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~ 388 (715)
|+.|...++|.+.+.+. ...+.+|...|++++|.+....-++++++|.+++||++..+.
T Consensus 335 gSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l 394 (720)
T KOG0321|consen 335 GSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNGL 394 (720)
T ss_pred cCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCch
Confidence 99999999999987554 566789999999999999777888999999999999996543
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.9e-21 Score=198.39 Aligned_cols=244 Identities=18% Similarity=0.288 Sum_probs=193.2
Q ss_pred EEEEEcC-------CCCEEEEEeCCCeEEEEeCCCCce---EE------------------EEeccCCCEEEEEEcCC-C
Q 005096 148 NRVLWTP-------TGRRLITGSQSGEFTLWNGQSFNF---EM------------------ILQAHDHAIRSMVWSHN-D 198 (715)
Q Consensus 148 ~~l~~sp-------dg~~Latgs~dg~I~Iwd~~~~~~---~~------------------~l~~h~~~V~~l~~spd-g 198 (715)
.|++|.. .|+++|.|+.|..|.|||+.-... .. .-.+|+..|.+++|+.+ .
T Consensus 177 LC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~ 256 (463)
T KOG0270|consen 177 LCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFR 256 (463)
T ss_pred hhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccc
Confidence 4666643 368999999999999999652111 00 12358888889999876 4
Q ss_pred CEEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecC-CCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEE
Q 005096 199 NWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRT-DLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVD 277 (715)
Q Consensus 199 ~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd-~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~ 277 (715)
+.||+|+.|.+|++||+++++...++..|...|.++.|++. ..+|++|+.|++|.+.|++........-...+.|..++
T Consensus 257 nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~ 336 (463)
T KOG0270|consen 257 NVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVA 336 (463)
T ss_pred eeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEE
Confidence 67899999999999999999999999999999999999985 47799999999999999985333332223557899999
Q ss_pred EcCCC-CEEEEEeCCCcEEEEECCCC-ceeEEeccCCCceEEEEEcCC-CCEEEEEECCCeEEEEECCCCeE--EEEeec
Q 005096 278 WHPTK-SLLVSGGKDSLVKLWDAKSG-RELCSFHGHKNMVLCVKWNQN-GNWVLTASKDQIIKLYDIRAMKE--LESFRG 352 (715)
Q Consensus 278 ~spdg-~~L~sgs~Dg~I~iwDl~s~-~~~~~~~~~~~~I~sl~~spd-g~~Lasgs~dg~I~iwDl~t~~~--~~~~~~ 352 (715)
|++.. ..++++..||+|+-+|+|+. +++.+++.|...|.+|+++.. -.+|++++.|+.|++|++..... +..-.-
T Consensus 337 w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~ 416 (463)
T KOG0270|consen 337 WDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSF 416 (463)
T ss_pred ecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccc
Confidence 99865 47778889999999999974 899999999999999999984 46788999999999999874332 222222
Q ss_pred CCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceE
Q 005096 353 HRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQV 391 (715)
Q Consensus 353 h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~ 391 (715)
.-+...|.++.++...+++.|+..+.++|||+.+.....
T Consensus 417 ~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V~ 455 (463)
T KOG0270|consen 417 KLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPVR 455 (463)
T ss_pred cccceeecccCCCcceEEEecCccceEEEeecccChhHH
Confidence 223477888888777889999999999999997765443
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1e-19 Score=180.31 Aligned_cols=240 Identities=16% Similarity=0.275 Sum_probs=187.8
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecc
Q 005096 189 IRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTG 268 (715)
Q Consensus 189 V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~ 268 (715)
..|+.|++.|.+||+|+.||.|.|||+.+......+..|...|++++|++||++|++++.|..|.+||+..+..++.+.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir- 104 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR- 104 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE-
Confidence 7799999999999999999999999999999989999999999999999999999999999999999999999888876
Q ss_pred cCCceEEEEEcCCCC-EEEEEeCCCcEEEEECCCCceeEEecc----CCCceEEEEEcCCCCEEEEEECCCeEEEEECCC
Q 005096 269 HGWDVKSVDWHPTKS-LLVSGGKDSLVKLWDAKSGRELCSFHG----HKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRA 343 (715)
Q Consensus 269 ~~~~I~si~~spdg~-~L~sgs~Dg~I~iwDl~s~~~~~~~~~----~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t 343 (715)
....|+.+.|+|... .+++.-.+..-.+.++...+....-.. .+....+..|.+.|++|++|...|.+.++|..+
T Consensus 105 f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t 184 (405)
T KOG1273|consen 105 FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAET 184 (405)
T ss_pred ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecch
Confidence 678999999998554 333333334345555554322111111 112234456889999999999999999999999
Q ss_pred CeEEEEeecCC-CCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCce---EEEee-------ccCCCEEEEEEcCCCCE
Q 005096 344 MKELESFRGHR-KDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQ---VEIHN-------VHDNTVWDLAWHPIGYL 412 (715)
Q Consensus 344 ~~~~~~~~~h~-~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~---~~~~~-------~h~~~V~~l~~spdg~~ 412 (715)
.+++..++... ..|..|.++- .++.|+.-+.|..|+.|+++.-... ..... ..+..-.+++|+.||.+
T Consensus 185 ~e~vas~rits~~~IK~I~~s~-~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeY 263 (405)
T KOG1273|consen 185 LECVASFRITSVQAIKQIIVSR-KGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEY 263 (405)
T ss_pred heeeeeeeechheeeeEEEEec-cCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccE
Confidence 99999998776 7899999988 8999999999999999988631111 01110 01223467889999999
Q ss_pred EEEEEC-CCeEEEEecCCC
Q 005096 413 LCSGSN-DHTTKFWCRNRP 430 (715)
Q Consensus 413 L~sgs~-Dg~I~iWdl~~~ 430 (715)
++.++. -..++||..+..
T Consensus 264 v~a~s~~aHaLYIWE~~~G 282 (405)
T KOG1273|consen 264 VCAGSARAHALYIWEKSIG 282 (405)
T ss_pred EEeccccceeEEEEecCCc
Confidence 988774 568999987543
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.8e-20 Score=192.54 Aligned_cols=258 Identities=20% Similarity=0.291 Sum_probs=201.8
Q ss_pred EeCCCCceEEEEeccCCCEEEEEEcCCC--CEEEEEeCCCcEEEEeCCC----CceeeeecCCCCCeEEEEEecCC-CEE
Q 005096 171 WNGQSFNFEMILQAHDHAIRSMVWSHND--NWMVSGDDGGAIKYWQNNM----NNVKANKSAHKESVRDLSFCRTD-LKF 243 (715)
Q Consensus 171 wd~~~~~~~~~l~~h~~~V~~l~~spdg--~~L~tgs~dg~I~iwd~~~----~~~~~~~~~h~~~I~~l~~spd~-~~L 243 (715)
+|+.+......++.+.+.|++++|+|.. +++++|+..|.|-+||+.+ ..-+..+..|...|.+|.|+|.+ ..|
T Consensus 171 l~l~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i 250 (498)
T KOG4328|consen 171 LDLDDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQI 250 (498)
T ss_pred cccccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhhe
Confidence 4455555666677789999999999975 5788999999999999953 23455567899999999999954 679
Q ss_pred EEEECCCcEEEEECCCCeeEEEecc--cCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCce-eEEeccCCCceEEEEE
Q 005096 244 CSCSDDTTVKVWDFARCQEERSLTG--HGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRE-LCSFHGHKNMVLCVKW 320 (715)
Q Consensus 244 as~s~Dg~V~iwdl~~~~~~~~l~~--~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~-~~~~~~~~~~I~sl~~ 320 (715)
++.+.||+|++-|+++......+.. ....+.++.|+.+...++++..=|.+.+||+++++. ...+..|+..|++|++
T Consensus 251 ~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~ 330 (498)
T KOG4328|consen 251 YSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVAL 330 (498)
T ss_pred eeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeec
Confidence 9999999999999987654433333 555678889998888888888878999999998654 6667778889999999
Q ss_pred cCC-CCEEEEEECCCeEEEEECCCCeE----EEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcC----CCCceE
Q 005096 321 NQN-GNWVLTASKDQIIKLYDIRAMKE----LESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVG----HETPQV 391 (715)
Q Consensus 321 spd-g~~Lasgs~dg~I~iwDl~t~~~----~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~----~~~~~~ 391 (715)
+|- ..+||+++.|++++|||+|.... +.....|...|.+..|||.++. |+|.+.|..|+|||.. ......
T Consensus 331 NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gt-l~TT~~D~~IRv~dss~~sa~~~p~~ 409 (498)
T KOG4328|consen 331 NPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGT-LLTTCQDNEIRVFDSSCISAKDEPLG 409 (498)
T ss_pred CCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCc-eEeeccCCceEEeecccccccCCccc
Confidence 994 46788999999999999986543 2344569999999999997777 8899999999999984 222333
Q ss_pred EEeeccCC----CEEEEEEcCCCCEEEEEECCCeEEEEecCC
Q 005096 392 EIHNVHDN----TVWDLAWHPIGYLLCSGSNDHTTKFWCRNR 429 (715)
Q Consensus 392 ~~~~~h~~----~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~ 429 (715)
.+...+.. ......|.|+..+|++|-.-..|-|+|-+.
T Consensus 410 ~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~ 451 (498)
T KOG4328|consen 410 TIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNG 451 (498)
T ss_pred eeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCC
Confidence 33322211 244568999999999999988999997643
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.4e-21 Score=211.89 Aligned_cols=286 Identities=18% Similarity=0.268 Sum_probs=236.5
Q ss_pred EEecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 005096 137 HTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNN 216 (715)
Q Consensus 137 ~~~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~ 216 (715)
.+.|.+|...|+|+.|...|.+|++|+.|..|+||..++..++..+.+|.+.|+.++.+.+..++++++.|..|++|.+.
T Consensus 183 ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~ 262 (1113)
T KOG0644|consen 183 IKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLP 262 (1113)
T ss_pred HHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecC
Confidence 35688999999999999999999999999999999999999999999999999999999998999999999999999999
Q ss_pred CCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEe-----cccCCceEEEEEcCCCCEEEEEeCC
Q 005096 217 MNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSL-----TGHGWDVKSVDWHPTKSLLVSGGKD 291 (715)
Q Consensus 217 ~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l-----~~~~~~I~si~~spdg~~L~sgs~D 291 (715)
.+..+..+.+|.+.|++|+|+|-. +.+.||++++||.+ ....... ......+.++.|..++..+++++.|
T Consensus 263 ~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r-~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d 337 (1113)
T KOG0644|consen 263 DGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDAR-LEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRD 337 (1113)
T ss_pred CCchHHHHhccccceeeeccCccc----cCCCCCceEecccc-ccccccCCCCCCcccccceeeeeccccccccccccCC
Confidence 999999999999999999999854 77889999999987 1111111 1234567788888888899999999
Q ss_pred CcEEEEECCCCceeEEeccCCCceEEEEEcCCC-CEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEE
Q 005096 292 SLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNG-NWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYF 370 (715)
Q Consensus 292 g~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg-~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l 370 (715)
+.-..|.+.... .+...+.-+.++.|- .+.+++-.+-.+++|++.++..++.+.+|...+..+.++|.+..+.
T Consensus 338 ~ea~n~e~~~l~------~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~ 411 (1113)
T KOG0644|consen 338 GEARNHEFEQLA------WRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIA 411 (1113)
T ss_pred cccccchhhHhh------hhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhh
Confidence 999888765311 111111112222222 4566677788999999999999999999999999999999999999
Q ss_pred EEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCCCCCcc
Q 005096 371 VSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGDTA 434 (715)
Q Consensus 371 ~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~~~~ 434 (715)
.+++.||.+.|||+-.+........+ .+.+.+.+|+.||..++....-|.+.|......+...
T Consensus 412 msag~dgst~iwdi~eg~pik~y~~g-h~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~s~k 474 (1113)
T KOG0644|consen 412 MSAGYDGSTIIWDIWEGIPIKHYFIG-HGKLVDGKFSQDGTSIALSDDHGQLYILGTGQSKSQK 474 (1113)
T ss_pred hhccCCCceEeeecccCCcceeeecc-cceeeccccCCCCceEecCCCCCceEEeccCCCcccc
Confidence 99999999999999888777666655 5577788999999999999889999999875544433
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.2e-20 Score=196.25 Aligned_cols=252 Identities=17% Similarity=0.312 Sum_probs=208.5
Q ss_pred eEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCE--EEEEECCCcEEEE
Q 005096 178 FEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLK--FCSCSDDTTVKVW 255 (715)
Q Consensus 178 ~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~--Las~s~Dg~V~iw 255 (715)
+...+.+|++.|.+|...+.|.+|++|+.||+|+||.+.++.++.++. ..+.|.||+|++.... ||++. +.++.|.
T Consensus 392 ~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~-~~~~~iv 469 (733)
T KOG0650|consen 392 CALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAV-GECVLIV 469 (733)
T ss_pred eeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEe-cCceEEe
Confidence 455678999999999999999999999999999999999999988874 4668999999997643 44333 3334444
Q ss_pred ECCCC-------------------------------------eeEEEecccCCceEEEEEcCCCCEEEEEeCC---CcEE
Q 005096 256 DFARC-------------------------------------QEERSLTGHGWDVKSVDWHPTKSLLVSGGKD---SLVK 295 (715)
Q Consensus 256 dl~~~-------------------------------------~~~~~l~~~~~~I~si~~spdg~~L~sgs~D---g~I~ 295 (715)
+..-+ .-++....|...|+.|.|+.+|.||++..-+ ..|.
T Consensus 470 np~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~Vl 549 (733)
T KOG0650|consen 470 NPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVL 549 (733)
T ss_pred CccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEE
Confidence 32110 0022333577889999999999999998764 4689
Q ss_pred EEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeC
Q 005096 296 LWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSL 375 (715)
Q Consensus 296 iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~ 375 (715)
|+++...+...-|....+.|.++.|+|...+|++++ ...|+|||+...+.++.+......|.++++++ ++.-|+.++.
T Consensus 550 iHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaT-q~~vRiYdL~kqelvKkL~tg~kwiS~msihp-~GDnli~gs~ 627 (733)
T KOG0650|consen 550 IHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVAT-QRSVRIYDLSKQELVKKLLTGSKWISSMSIHP-NGDNLILGSY 627 (733)
T ss_pred EEecccccccCchhhcCCceeEEEecCCCceEEEEe-ccceEEEehhHHHHHHHHhcCCeeeeeeeecC-CCCeEEEecC
Confidence 999988777777776788899999999999999887 56899999999888888888889999999999 7888889999
Q ss_pred CCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCCCCCc
Q 005096 376 DGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGDT 433 (715)
Q Consensus 376 DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~~~ 433 (715)
|+.++.||++......+.+..|...|++++|+..-.++++|+.||++.||--.-..+.
T Consensus 628 d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl 685 (733)
T KOG0650|consen 628 DKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDL 685 (733)
T ss_pred CCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhh
Confidence 9999999999988888888889999999999999999999999999999865444443
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.7e-20 Score=183.79 Aligned_cols=271 Identities=16% Similarity=0.249 Sum_probs=201.2
Q ss_pred CEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCC--CCEEEEEeCCCcEEEEeCCCCceeeee--cCCC-CCe
Q 005096 157 RRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHN--DNWMVSGDDGGAIKYWQNNMNNVKANK--SAHK-ESV 231 (715)
Q Consensus 157 ~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spd--g~~L~tgs~dg~I~iwd~~~~~~~~~~--~~h~-~~I 231 (715)
..+|++.++|.|+|||..+++.+..++++...++.+.|..+ ...+.+|+.||+|++||+++......+ ..+. ...
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 57899999999999999999999999999999999999873 578899999999999999886544433 2333 456
Q ss_pred EEEEEecCCCEEEEEEC----CCcEEEEECCCCee-EEE-ecccCCceEEEEEcCCC-CEEEEEeCCCcEEEEECCCCce
Q 005096 232 RDLSFCRTDLKFCSCSD----DTTVKVWDFARCQE-ERS-LTGHGWDVKSVDWHPTK-SLLVSGGKDSLVKLWDAKSGRE 304 (715)
Q Consensus 232 ~~l~~spd~~~Las~s~----Dg~V~iwdl~~~~~-~~~-l~~~~~~I~si~~spdg-~~L~sgs~Dg~I~iwDl~s~~~ 304 (715)
.+++...+++.+++|+. |-.|.+||++..+. +.. ...|.+.|++|.|+|.. ++|++|+.||.|.|||++....
T Consensus 121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~E 200 (376)
T KOG1188|consen 121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNE 200 (376)
T ss_pred eEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcc
Confidence 67777667777887754 67899999987766 444 35799999999999965 6999999999999999985432
Q ss_pred ---eEEeccCCCceEEEEEcCCC-CEEEEEECCCeEEEEECCCCeEEEEeecCCCC----------eEEE-EEccCCCCE
Q 005096 305 ---LCSFHGHKNMVLCVKWNQNG-NWVLTASKDQIIKLYDIRAMKELESFRGHRKD----------VTAL-AWHPFHEEY 369 (715)
Q Consensus 305 ---~~~~~~~~~~I~sl~~spdg-~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~----------V~~l-~~sp~~~~~ 369 (715)
+...-.+...|.++.|..++ +.|.+-+......+|+++.+.+...+....-. -+-| ..++.+...
T Consensus 201 eDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~ 280 (376)
T KOG1188|consen 201 EDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDT 280 (376)
T ss_pred hhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcce
Confidence 22222367789999999876 45888889999999999988765544322100 0111 122334455
Q ss_pred EEEEeC-CCcEEEEEcC------CCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEec
Q 005096 370 FVSGSL-DGSIFHWLVG------HETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCR 427 (715)
Q Consensus 370 l~sgs~-DG~I~iwd~~------~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl 427 (715)
++.++. -+...++-+. .......+..+|...|.++.|...+.+++||++||.|.+|..
T Consensus 281 ~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 281 CALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred EEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEec
Confidence 554444 5555555433 122333344457888999999988999999999999999986
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=4e-19 Score=180.07 Aligned_cols=294 Identities=14% Similarity=0.233 Sum_probs=225.2
Q ss_pred eeEEEEecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC------ceEEEEe-ccCCCEEEEEEcCCCCEEEEEe
Q 005096 133 AKFVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSF------NFEMILQ-AHDHAIRSMVWSHNDNWMVSGD 205 (715)
Q Consensus 133 ~~~~~~~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~------~~~~~l~-~h~~~V~~l~~spdg~~L~tgs 205 (715)
..++.+.+.+|.+.|++|.|+.++++|++|+.|..++||+++.. +.+.... .|...|.|++|....++|++|.
T Consensus 45 R~~~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~ 124 (609)
T KOG4227|consen 45 RPFCQKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGE 124 (609)
T ss_pred cchhhhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCC
Confidence 34566788999999999999999999999999999999997642 3333333 3558899999999899999999
Q ss_pred CCCcEEEEeCCCCceeeeec--CCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCe---eEEEecccCCceEEEEEcC
Q 005096 206 DGGAIKYWQNNMNNVKANKS--AHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQ---EERSLTGHGWDVKSVDWHP 280 (715)
Q Consensus 206 ~dg~I~iwd~~~~~~~~~~~--~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~---~~~~l~~~~~~I~si~~sp 280 (715)
.+++|.+.|+++.+.+..+. ...+.|..+..+|.++.|++.+.++.|.+||++... ....+........++.|+|
T Consensus 125 ~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P 204 (609)
T KOG4227|consen 125 RWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHP 204 (609)
T ss_pred CcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecC
Confidence 99999999999988766653 233589999999999999999999999999997654 1223334556678899999
Q ss_pred CC-CEEEEEeCCCcEEEEECCCCc-eeEEe---ccC---CCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEE-EEee
Q 005096 281 TK-SLLVSGGKDSLVKLWDAKSGR-ELCSF---HGH---KNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKEL-ESFR 351 (715)
Q Consensus 281 dg-~~L~sgs~Dg~I~iwDl~s~~-~~~~~---~~~---~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~-~~~~ 351 (715)
.. .+|++.+..+-+.+||++... .+... ++. ...-.++.|+++|+.|++.-....-.+||+-+.++. ..+.
T Consensus 205 ~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D 284 (609)
T KOG4227|consen 205 ETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSD 284 (609)
T ss_pred CCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEecc
Confidence 65 477888888899999998532 22211 111 122356789999999988877777788898765443 2222
Q ss_pred c------CCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCC----------------------CceEEEeeccCCCEEE
Q 005096 352 G------HRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHE----------------------TPQVEIHNVHDNTVWD 403 (715)
Q Consensus 352 ~------h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~----------------------~~~~~~~~~h~~~V~~ 403 (715)
. ....+.+++|. ++..|++|+.+-.|++|.+-.. ...+.++.+|.+.++.
T Consensus 285 ~N~~GY~N~~T~KS~~F~--~D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQ 362 (609)
T KOG4227|consen 285 HNPNGYCNIKTIKSMTFI--DDYTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQ 362 (609)
T ss_pred CCCCcceeeeeeeeeeee--cceeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccc
Confidence 1 12346677776 5566999999999999987321 1224467789999999
Q ss_pred EEEcCCCCEEEEEECCCeEEEEecC
Q 005096 404 LAWHPIGYLLCSGSNDHTTKFWCRN 428 (715)
Q Consensus 404 l~~spdg~~L~sgs~Dg~I~iWdl~ 428 (715)
+.|++...+|++.+..+.++||.--
T Consensus 363 VRF~~H~~~l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 363 VRFSQHNNLLVSSGVENSFKLWSDH 387 (609)
T ss_pred eeecCCcceEeccchhhheeccccc
Confidence 9999999999999999999999754
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2e-18 Score=165.78 Aligned_cols=270 Identities=15% Similarity=0.243 Sum_probs=201.2
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCeEEEEeCCC----------CceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 005096 145 CSINRVLWTPTGRRLITGSQSGEFTLWNGQS----------FNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQ 214 (715)
Q Consensus 145 ~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~----------~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd 214 (715)
..|.+-+|+|.+++|++|..+|.|.+..+++ ...+....+|++.|+.++|. +.+|++|+ ||.|+-|.
T Consensus 11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~ 87 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWE 87 (325)
T ss_pred HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEee
Confidence 3466778999999999999999999998654 22344568999999999998 45677665 49999997
Q ss_pred CCCCce----eeee----c-----CCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCC
Q 005096 215 NNMNNV----KANK----S-----AHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPT 281 (715)
Q Consensus 215 ~~~~~~----~~~~----~-----~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spd 281 (715)
.+.... +..+ . ..--.|+++.+.|..+.|++++.|+.++.||+++++..+.+++|.+-|.+++--..
T Consensus 88 W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~ 167 (325)
T KOG0649|consen 88 WNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNA 167 (325)
T ss_pred ehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeeccc
Confidence 654322 1100 1 11236889999988888888889999999999999999999999999999998656
Q ss_pred CCEEEEEeCCCcEEEEECCCCceeEEeccC----------CCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEee
Q 005096 282 KSLLVSGGKDSLVKLWDAKSGRELCSFHGH----------KNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFR 351 (715)
Q Consensus 282 g~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~----------~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~ 351 (715)
...+++|++||++||||+++++++..+... ..+|-+++.+ .++|++|+ ...+.+|.++..++...|.
T Consensus 168 ~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~--edWlvCGg-Gp~lslwhLrsse~t~vfp 244 (325)
T KOG0649|consen 168 NGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVN--EDWLVCGG-GPKLSLWHLRSSESTCVFP 244 (325)
T ss_pred CcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEecc--CceEEecC-CCceeEEeccCCCceEEEe
Confidence 667999999999999999999998877532 3456677654 66888775 5689999999988887776
Q ss_pred cCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCC-CEEEEEECCCeEEEEe
Q 005096 352 GHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIG-YLLCSGSNDHTTKFWC 426 (715)
Q Consensus 352 ~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg-~~L~sgs~Dg~I~iWd 426 (715)
....+..+.| .++.+++++..+.|.-|.++.... ..........++..|+..- ++|..++....+.|+.
T Consensus 245 -ipa~v~~v~F---~~d~vl~~G~g~~v~~~~l~Gvl~--a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~~ 314 (325)
T KOG0649|consen 245 -IPARVHLVDF---VDDCVLIGGEGNHVQSYTLNGVLQ--ANIPVESTACYSASWQTSPIKFISIAGFSNKLHILK 314 (325)
T ss_pred -cccceeEeee---ecceEEEeccccceeeeeeccEEE--EeccCCccceeeecccCCceEEEEecccceeeeeee
Confidence 4556777777 467788888888899998753221 2222223345566665443 4555566667777663
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.1e-19 Score=175.03 Aligned_cols=243 Identities=21% Similarity=0.395 Sum_probs=187.5
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc-------------eeeeecCCCCCeEEEEEe-------cCCCEEEEEE
Q 005096 188 AIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNN-------------VKANKSAHKESVRDLSFC-------RTDLKFCSCS 247 (715)
Q Consensus 188 ~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~-------------~~~~~~~h~~~I~~l~~s-------pd~~~Las~s 247 (715)
-...+.|+|||..|++-+.|..+.+|++.... ...........|.+.+|- |+.+++++.+
T Consensus 51 f~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ss 130 (406)
T KOG2919|consen 51 FLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSS 130 (406)
T ss_pred hhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecc
Confidence 34578999999999999999999999864211 111112234567777775 5678899999
Q ss_pred CCCcEEEEECCCCeeEEEecc--cCC---ceEEEEEcCCCCEEEEEeCCCcEEEEEC-CCCceeEEe-------ccCCCc
Q 005096 248 DDTTVKVWDFARCQEERSLTG--HGW---DVKSVDWHPTKSLLVSGGKDSLVKLWDA-KSGRELCSF-------HGHKNM 314 (715)
Q Consensus 248 ~Dg~V~iwdl~~~~~~~~l~~--~~~---~I~si~~spdg~~L~sgs~Dg~I~iwDl-~s~~~~~~~-------~~~~~~ 314 (715)
.|.-|++||.-+++....+.. |.. ...+++|++||..|++|. ..+|++||+ |.|+....+ .+..+.
T Consensus 131 r~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~~k~gq~gi 209 (406)
T KOG2919|consen 131 RDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGI 209 (406)
T ss_pred ccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhhhcccccccce
Confidence 999999999999988777654 222 356899999999998775 588999999 555432211 123667
Q ss_pred eEEEEEcC-CCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEe-CCCcEEEEEcCCCCceEE
Q 005096 315 VLCVKWNQ-NGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGS-LDGSIFHWLVGHETPQVE 392 (715)
Q Consensus 315 I~sl~~sp-dg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs-~DG~I~iwd~~~~~~~~~ 392 (715)
|.|++|+| +.+.+++++....+-||.-...+.+..+-+|.+.|+.+.|.+ +++.|++|. .|-.|..||++.....+.
T Consensus 210 isc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~e-dGn~lfsGaRk~dkIl~WDiR~~~~pv~ 288 (406)
T KOG2919|consen 210 ISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCE-DGNKLFSGARKDDKILCWDIRYSRDPVY 288 (406)
T ss_pred eeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEecc-CcCeecccccCCCeEEEEeehhccchhh
Confidence 99999999 566899999999999999999999999999999999999999 555555555 577899999988776555
Q ss_pred EeeccCC-CEEEE--EEcCCCCEEEEEECCCeEEEEecCCCCC
Q 005096 393 IHNVHDN-TVWDL--AWHPIGYLLCSGSNDHTTKFWCRNRPGD 432 (715)
Q Consensus 393 ~~~~h~~-~V~~l--~~spdg~~L~sgs~Dg~I~iWdl~~~~~ 432 (715)
.+..|.+ .-..| ...+++++|++|+.||.|++||++..++
T Consensus 289 ~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn 331 (406)
T KOG2919|consen 289 ALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGN 331 (406)
T ss_pred hhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCC
Confidence 5555544 33334 4567799999999999999999988666
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.1e-19 Score=189.12 Aligned_cols=180 Identities=16% Similarity=0.272 Sum_probs=140.9
Q ss_pred CCCcEEEEECCCCeeE-----EEecccCCceEEEEEcC-CCCEEEEEeCCCcEEEEECCCC-------ceeEEeccCCCc
Q 005096 248 DDTTVKVWDFARCQEE-----RSLTGHGWDVKSVDWHP-TKSLLVSGGKDSLVKLWDAKSG-------RELCSFHGHKNM 314 (715)
Q Consensus 248 ~Dg~V~iwdl~~~~~~-----~~l~~~~~~I~si~~sp-dg~~L~sgs~Dg~I~iwDl~s~-------~~~~~~~~~~~~ 314 (715)
..|.|.||+++.-..+ -.+. .+..|+++.|+| |...|+++++||.|+||.+..+ .....++.|...
T Consensus 601 ~gG~iai~el~~PGrLPDgv~p~l~-Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eK 679 (1012)
T KOG1445|consen 601 SGGVIAIYELNEPGRLPDGVMPGLF-NGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEK 679 (1012)
T ss_pred CCceEEEEEcCCCCCCCcccccccc-cCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccce
Confidence 3456777777542221 1111 345799999999 5678999999999999988653 234567789999
Q ss_pred eEEEEEcC-CCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEE
Q 005096 315 VLCVKWNQ-NGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEI 393 (715)
Q Consensus 315 I~sl~~sp-dg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~ 393 (715)
|++|.|+| -.+.|++++.|-+|+|||+++++....+.+|.+.|.+++|++ +++.+++.+.||+|++|+-++....+..
T Consensus 680 I~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSp-dGr~~AtVcKDg~~rVy~Prs~e~pv~E 758 (1012)
T KOG1445|consen 680 ITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSP-DGRRIATVCKDGTLRVYEPRSREQPVYE 758 (1012)
T ss_pred EEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECC-CCcceeeeecCceEEEeCCCCCCCcccc
Confidence 99999999 567899999999999999999999999999999999999999 8999999999999999998877654443
Q ss_pred eec-cCCCEEEEEEcCCCCEEEEEECCC----eEEEEecCC
Q 005096 394 HNV-HDNTVWDLAWHPIGYLLCSGSNDH----TTKFWCRNR 429 (715)
Q Consensus 394 ~~~-h~~~V~~l~~spdg~~L~sgs~Dg----~I~iWdl~~ 429 (715)
-.+ -...--.|.|.-||++|++.+-|. .|.+|+-..
T Consensus 759 g~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~ 799 (1012)
T KOG1445|consen 759 GKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQT 799 (1012)
T ss_pred CCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhh
Confidence 222 123345678888999988877654 477776543
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.83 E-value=8e-19 Score=172.23 Aligned_cols=263 Identities=18% Similarity=0.294 Sum_probs=197.7
Q ss_pred CCeEEEEeCCCCc---eEEEEeccCCCEEEEEEcCCCC-EEEEEeCC-------CcEEEEeCCCCc---------eeeee
Q 005096 165 SGEFTLWNGQSFN---FEMILQAHDHAIRSMVWSHNDN-WMVSGDDG-------GAIKYWQNNMNN---------VKANK 224 (715)
Q Consensus 165 dg~I~Iwd~~~~~---~~~~l~~h~~~V~~l~~spdg~-~L~tgs~d-------g~I~iwd~~~~~---------~~~~~ 224 (715)
|+.|.+.+++... ..+.|..|.+.|..|+-+|-+. +|+|+..+ -.+.||.+.... ++..+
T Consensus 39 dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~L 118 (370)
T KOG1007|consen 39 DNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASL 118 (370)
T ss_pred cceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcC
Confidence 5667776655432 2345666788999999998654 55555432 236799875432 22222
Q ss_pred c-CCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCee-EEEec-----ccCCceEEEEEcC--CCCEEEEEeCCCcEE
Q 005096 225 S-AHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQE-ERSLT-----GHGWDVKSVDWHP--TKSLLVSGGKDSLVK 295 (715)
Q Consensus 225 ~-~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~-~~~l~-----~~~~~I~si~~sp--dg~~L~sgs~Dg~I~ 295 (715)
. .+-+.|.|+.|.|++..+++.. |..|.+|++.+... +..+. .+....++-+|+| +++.+++. .|+++.
T Consensus 119 dteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~ 196 (370)
T KOG1007|consen 119 DTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQ 196 (370)
T ss_pred CHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEE
Confidence 2 3445899999999999998876 77899999977665 33322 2455678889998 67777665 579999
Q ss_pred EEECCCCceeEEec-cCCCceEEEEEcCCCC-EEEEEECCCeEEEEECCCC-eEEEEeecCCCCeEEEEEccCCCCEEEE
Q 005096 296 LWDAKSGRELCSFH-GHKNMVLCVKWNQNGN-WVLTASKDQIIKLYDIRAM-KELESFRGHRKDVTALAWHPFHEEYFVS 372 (715)
Q Consensus 296 iwDl~s~~~~~~~~-~~~~~I~sl~~spdg~-~Lasgs~dg~I~iwDl~t~-~~~~~~~~h~~~V~~l~~sp~~~~~l~s 372 (715)
.||+|+.++...++ .|...|..+.|+|+.. +|++|+.||.|+|||.|+- ..+.++..|...|.++.|++..+.+|++
T Consensus 197 ~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs 276 (370)
T KOG1007|consen 197 FWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILS 276 (370)
T ss_pred EEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEe
Confidence 99999988777664 6778899999999765 5778899999999999864 4688899999999999999999999999
Q ss_pred EeCCCcEEEEEcCCCC----------------------------ceEEEeeccCCCEEEEEEcCC-CCEEEEEECCCeEE
Q 005096 373 GSLDGSIFHWLVGHET----------------------------PQVEIHNVHDNTVWDLAWHPI-GYLLCSGSNDHTTK 423 (715)
Q Consensus 373 gs~DG~I~iwd~~~~~----------------------------~~~~~~~~h~~~V~~l~~spd-g~~L~sgs~Dg~I~ 423 (715)
++.|..|.+|....-. ..+..+..|++.|.+++|+.- --+|++-+.||.+.
T Consensus 277 ~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRvi 356 (370)
T KOG1007|consen 277 GGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVI 356 (370)
T ss_pred cCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEE
Confidence 9999999999653210 112345568999999999875 56788999999999
Q ss_pred EEecCC
Q 005096 424 FWCRNR 429 (715)
Q Consensus 424 iWdl~~ 429 (715)
|=++.+
T Consensus 357 Is~V~r 362 (370)
T KOG1007|consen 357 ISSVPR 362 (370)
T ss_pred eecCCh
Confidence 877643
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.4e-19 Score=174.84 Aligned_cols=247 Identities=22% Similarity=0.401 Sum_probs=191.9
Q ss_pred EEecCCCCccEEEEEEcCCCCE-EEEEeCC-------CeEEEEeCCC---------CceEEEEe-ccCCCEEEEEEcCCC
Q 005096 137 HTSLNKNRCSINRVLWTPTGRR-LITGSQS-------GEFTLWNGQS---------FNFEMILQ-AHDHAIRSMVWSHND 198 (715)
Q Consensus 137 ~~~l~~H~~~I~~l~~spdg~~-Latgs~d-------g~I~Iwd~~~---------~~~~~~l~-~h~~~V~~l~~spdg 198 (715)
.+.+..|.+.|..|+-+|.... |+++..+ ..+.||.+.. .+.+..+. .+-+.|.||.|.|++
T Consensus 56 skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns 135 (370)
T KOG1007|consen 56 SKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNS 135 (370)
T ss_pred hhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCC
Confidence 3457788999999999996554 5555432 2478998653 23344444 455789999999999
Q ss_pred CEEEEEeCCCcEEEEeCCCCce-eeee-----cCCCCCeEEEEEec--CCCEEEEEECCCcEEEEECCCCeeEEEec-cc
Q 005096 199 NWMVSGDDGGAIKYWQNNMNNV-KANK-----SAHKESVRDLSFCR--TDLKFCSCSDDTTVKVWDFARCQEERSLT-GH 269 (715)
Q Consensus 199 ~~L~tgs~dg~I~iwd~~~~~~-~~~~-----~~h~~~I~~l~~sp--d~~~Las~s~Dg~V~iwdl~~~~~~~~l~-~~ 269 (715)
..|++-. |..|.+|+++.... ...+ ..+....++-+|++ |++.+++ ..|+++..||+++.++...+. .|
T Consensus 136 ~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~t-t~d~tl~~~D~RT~~~~~sI~dAH 213 (370)
T KOG1007|consen 136 DKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVAT-TSDSTLQFWDLRTMKKNNSIEDAH 213 (370)
T ss_pred CeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEE-eCCCcEEEEEccchhhhcchhhhh
Confidence 9988765 78999999987654 2222 12455678888988 5666655 458899999999887766664 68
Q ss_pred CCceEEEEEcCCCC-EEEEEeCCCcEEEEECCC-CceeEEeccCCCceEEEEEcC-CCCEEEEEECCCeEEEEECCCC--
Q 005096 270 GWDVKSVDWHPTKS-LLVSGGKDSLVKLWDAKS-GRELCSFHGHKNMVLCVKWNQ-NGNWVLTASKDQIIKLYDIRAM-- 344 (715)
Q Consensus 270 ~~~I~si~~spdg~-~L~sgs~Dg~I~iwDl~s-~~~~~~~~~~~~~I~sl~~sp-dg~~Lasgs~dg~I~iwDl~t~-- 344 (715)
...|.++.|+|+.. +|++|++||.|+|||+|. ...+.++.+|..+|.++.|++ ...+|++++.|..|.+|...+-
T Consensus 214 gq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSS 293 (370)
T KOG1007|consen 214 GQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSS 293 (370)
T ss_pred cceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEecccccc
Confidence 88899999999876 788999999999999986 456888999999999999999 4568889999999999965321
Q ss_pred ---------------------------eEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcC
Q 005096 345 ---------------------------KELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVG 385 (715)
Q Consensus 345 ---------------------------~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~ 385 (715)
..+.++..|+..|++++|+..+..+|++-++||++.|=.+.
T Consensus 294 E~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 294 EQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred ccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence 12456778999999999999888899999999999887764
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.7e-19 Score=174.99 Aligned_cols=282 Identities=18% Similarity=0.231 Sum_probs=205.1
Q ss_pred ecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEe-ccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 005096 139 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQ-AHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNM 217 (715)
Q Consensus 139 ~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~-~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~ 217 (715)
.|+.|.+.|+|+.|..+++ |.+|...|.|++|++.+.+....++ .+...|+.+.-.++ +.|.+-+.|..+.+|++..
T Consensus 9 vLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~ 86 (323)
T KOG0322|consen 9 VLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAY 86 (323)
T ss_pred Eeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEccC
Confidence 4569999999999998885 9999999999999999988888888 56778998888877 5678889999999999987
Q ss_pred CceeeeecCCCCCeEEEEEecC-----CC----EEEEEECCC-cEEEEECCCCeeEEEe----cccCCceEEEEEcCC-C
Q 005096 218 NNVKANKSAHKESVRDLSFCRT-----DL----KFCSCSDDT-TVKVWDFARCQEERSL----TGHGWDVKSVDWHPT-K 282 (715)
Q Consensus 218 ~~~~~~~~~h~~~I~~l~~spd-----~~----~Las~s~Dg-~V~iwdl~~~~~~~~l----~~~~~~I~si~~spd-g 282 (715)
...+.. |.-.++++.|++. .+ .++.-++.. .+.+-|..+...+... ....+.+.|..|.-+ +
T Consensus 87 s~~i~i---~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~ 163 (323)
T KOG0322|consen 87 SAFISI---HSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACG 163 (323)
T ss_pred cceEEE---eeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeecccccc
Confidence 554433 3334455555432 11 111111100 1222222221112211 123456777775443 2
Q ss_pred C--EEEEEeCCCcEEEEECCCCce----------eEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCC--e--E
Q 005096 283 S--LLVSGGKDSLVKLWDAKSGRE----------LCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAM--K--E 346 (715)
Q Consensus 283 ~--~L~sgs~Dg~I~iwDl~s~~~----------~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~--~--~ 346 (715)
+ +|++|.++|.|.+||+.++.. +.....|...|.++.|.+..+.=++|+.+..+..|++... . .
T Consensus 164 s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~ 243 (323)
T KOG0322|consen 164 STFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQI 243 (323)
T ss_pred ceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccc
Confidence 2 667888999999999998733 3334568889999999876666677888888889887632 2 2
Q ss_pred EEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEe
Q 005096 347 LESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWC 426 (715)
Q Consensus 347 ~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWd 426 (715)
-.+++..+-.|..+.+-+ +++++|+++.|++|+||..++...+. ++..|.+.|++++|+++..++|+++.|+.|.+|+
T Consensus 244 ~~e~~lknpGv~gvrIRp-D~KIlATAGWD~RiRVyswrtl~pLA-VLkyHsagvn~vAfspd~~lmAaaskD~rISLWk 321 (323)
T KOG0322|consen 244 RKEITLKNPGVSGVRIRP-DGKILATAGWDHRIRVYSWRTLNPLA-VLKYHSAGVNAVAFSPDCELMAAASKDARISLWK 321 (323)
T ss_pred cceEEecCCCccceEEcc-CCcEEeecccCCcEEEEEeccCCchh-hhhhhhcceeEEEeCCCCchhhhccCCceEEeee
Confidence 233444556788889988 89999999999999999998877654 4556999999999999999999999999999998
Q ss_pred c
Q 005096 427 R 427 (715)
Q Consensus 427 l 427 (715)
+
T Consensus 322 L 322 (323)
T KOG0322|consen 322 L 322 (323)
T ss_pred c
Confidence 6
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.82 E-value=2e-18 Score=169.65 Aligned_cols=276 Identities=16% Similarity=0.291 Sum_probs=201.5
Q ss_pred cEEEEEEcC---CCCEEEEEeC----CCeEEEEeCC--CCceEEEE-eccCCCEEEEEEcCCCC-----EEEEEeCCCcE
Q 005096 146 SINRVLWTP---TGRRLITGSQ----SGEFTLWNGQ--SFNFEMIL-QAHDHAIRSMVWSHNDN-----WMVSGDDGGAI 210 (715)
Q Consensus 146 ~I~~l~~sp---dg~~Latgs~----dg~I~Iwd~~--~~~~~~~l-~~h~~~V~~l~~spdg~-----~L~tgs~dg~I 210 (715)
.+.++.|+. ...+||.|+. .+.|.|..++ +++.+..- ..|...++.+.|.|+.+ +|||++ -.+
T Consensus 46 ~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~L 123 (364)
T KOG0290|consen 46 PLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSS--DFL 123 (364)
T ss_pred ceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhccc--CeE
Confidence 467777773 2346777764 4566665443 34333222 35788999999999863 555544 579
Q ss_pred EEEeCCCCcee----ee-----ecCCCCCeEEEEEec-CCCEEEEEECCCcEEEEECCCCe---eEEEecccCCceEEEE
Q 005096 211 KYWQNNMNNVK----AN-----KSAHKESVRDLSFCR-TDLKFCSCSDDTTVKVWDFARCQ---EERSLTGHGWDVKSVD 277 (715)
Q Consensus 211 ~iwd~~~~~~~----~~-----~~~h~~~I~~l~~sp-d~~~Las~s~Dg~V~iwdl~~~~---~~~~l~~~~~~I~si~ 277 (715)
++|.+...+.. .. ...+...++++.|+. |-++|.+++-|.++.|||++++. ....+.+|...|.+|+
T Consensus 124 RlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIa 203 (364)
T KOG0290|consen 124 RLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIA 203 (364)
T ss_pred EEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEE
Confidence 99988743211 11 123556889999987 45788999999999999998763 4667788999999999
Q ss_pred EcCCC-CEEEEEeCCCcEEEEECCCCceeEEe-c--cCCCceEEEEEcC-CCCEEEEEECC-CeEEEEECCC-CeEEEEe
Q 005096 278 WHPTK-SLLVSGGKDSLVKLWDAKSGRELCSF-H--GHKNMVLCVKWNQ-NGNWVLTASKD-QIIKLYDIRA-MKELESF 350 (715)
Q Consensus 278 ~spdg-~~L~sgs~Dg~I~iwDl~s~~~~~~~-~--~~~~~I~sl~~sp-dg~~Lasgs~d-g~I~iwDl~t-~~~~~~~ 350 (715)
|..++ +.|++++.||.||+||+|..+.-..+ + ........++|+. |-+++|+-..| ..|.|.|+|. ...+.++
T Consensus 204 f~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L 283 (364)
T KOG0290|consen 204 FLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARL 283 (364)
T ss_pred eccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehh
Confidence 99865 48899999999999999976543333 2 2245688899998 55788876544 5799999986 5668899
Q ss_pred ecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCc-----eEEEeeccCCCEEEEEEcCC-CCEEEEEECCCeEEE
Q 005096 351 RGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETP-----QVEIHNVHDNTVWDLAWHPI-GYLLCSGSNDHTTKF 424 (715)
Q Consensus 351 ~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~-----~~~~~~~h~~~V~~l~~spd-g~~L~sgs~Dg~I~i 424 (715)
+.|...|+.|+|.|.....|+++++|..+.|||+..-.. .+... ...+.|+.|.|++. ...|+.+. ++++.|
T Consensus 284 ~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay-~a~~EVNqi~Ws~~~~Dwiai~~-~kklei 361 (364)
T KOG0290|consen 284 RNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAY-TAGGEVNQIQWSSSQPDWIAICF-GKKLEI 361 (364)
T ss_pred hcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhh-hccceeeeeeecccCCCEEEEEe-cCeeeE
Confidence 999999999999998899999999999999999965432 11112 24668999999965 56777766 444444
Q ss_pred E
Q 005096 425 W 425 (715)
Q Consensus 425 W 425 (715)
-
T Consensus 362 L 362 (364)
T KOG0290|consen 362 L 362 (364)
T ss_pred E
Confidence 3
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.82 E-value=8.7e-20 Score=193.46 Aligned_cols=252 Identities=25% Similarity=0.359 Sum_probs=199.5
Q ss_pred ecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCC--------CceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcE
Q 005096 139 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQS--------FNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAI 210 (715)
Q Consensus 139 ~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~--------~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I 210 (715)
++..|.+.|++++|.+....|++++.||+|++|++.+ .+.+.+|.+|.+.|.|+++..++..+++|+.||+|
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I 368 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTI 368 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCcee
Confidence 7888999999999999999999999999999999832 34577899999999999999999999999999999
Q ss_pred EEEeCCC----------CceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEeccc--CCceEEEEE
Q 005096 211 KYWQNNM----------NNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGH--GWDVKSVDW 278 (715)
Q Consensus 211 ~iwd~~~----------~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~--~~~I~si~~ 278 (715)
+.|++.. ..+...+.+|.+.|+.++++.....|++|+.||+|++|+...... .++... .+--.++++
T Consensus 369 ~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~ 447 (577)
T KOG0642|consen 369 RCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDR 447 (577)
T ss_pred eeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcceEee
Confidence 9996432 134556789999999999999999999999999999999866554 333322 223345555
Q ss_pred cCCC-CEEEEEeCCCcEEEEECCCCceeEEecc-------CCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEe
Q 005096 279 HPTK-SLLVSGGKDSLVKLWDAKSGRELCSFHG-------HKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESF 350 (715)
Q Consensus 279 spdg-~~L~sgs~Dg~I~iwDl~s~~~~~~~~~-------~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~ 350 (715)
.... ...++...-+.-.++|++....+..+.. ....+.-+.+++...+.+++..|+.|+++|..+++.+...
T Consensus 448 ~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~ 527 (577)
T KOG0642|consen 448 TSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSM 527 (577)
T ss_pred ccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchhe
Confidence 4332 2223333333334445554444444431 1235778889999999999999999999999999999999
Q ss_pred ecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEE
Q 005096 351 RGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVE 392 (715)
Q Consensus 351 ~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~ 392 (715)
..|...++++++.+ ++-+|++++.|+.|++|.+....+...
T Consensus 528 ~a~~~svtslai~~-ng~~l~s~s~d~sv~l~kld~k~~~~e 568 (577)
T KOG0642|consen 528 VAHKDSVTSLAIDP-NGPYLMSGSHDGSVRLWKLDVKTCVLE 568 (577)
T ss_pred eeccceecceeecC-CCceEEeecCCceeehhhccchheeec
Confidence 99999999999999 999999999999999999876654433
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.9e-18 Score=193.61 Aligned_cols=289 Identities=17% Similarity=0.306 Sum_probs=216.5
Q ss_pred cCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccC---CCEEEEEEcC--CCCEEEEEeCCCcEEEEe
Q 005096 140 LNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHD---HAIRSMVWSH--NDNWMVSGDDGGAIKYWQ 214 (715)
Q Consensus 140 l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~---~~V~~l~~sp--dg~~L~tgs~dg~I~iwd 214 (715)
..+....-..+.|++-...|+++...-.|+|||.+.++....|..+. ..|+.+++.. |..+|++|+.||.|+||+
T Consensus 1060 ~~~n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk 1139 (1387)
T KOG1517|consen 1060 MTGNNQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWK 1139 (1387)
T ss_pred HhcCCCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEec
Confidence 34445567788999999999999988899999999998887776543 5689998865 346889999999999997
Q ss_pred CCC-----CceeeeecC-------CCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEec-ccCCceEEEEEcC-
Q 005096 215 NNM-----NNVKANKSA-------HKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLT-GHGWDVKSVDWHP- 280 (715)
Q Consensus 215 ~~~-----~~~~~~~~~-------h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~-~~~~~I~si~~sp- 280 (715)
-.. .+++..+.. ..+.-.-++|-....+|+++++-..|+|||.+...++..+. +....|+++.-+-
T Consensus 1140 ~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~ 1219 (1387)
T KOG1517|consen 1140 DYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLV 1219 (1387)
T ss_pred ccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeeccccc
Confidence 322 233332221 11122445676666777777778899999998877776664 3445577766544
Q ss_pred CCCEEEEEeCCCcEEEEECCCC---ceeEEeccCCCc--eEEEEEcCCCC-EEEEEECCCeEEEEECCCCeEE--EEeec
Q 005096 281 TKSLLVSGGKDSLVKLWDAKSG---RELCSFHGHKNM--VLCVKWNQNGN-WVLTASKDQIIKLYDIRAMKEL--ESFRG 352 (715)
Q Consensus 281 dg~~L~sgs~Dg~I~iwDl~s~---~~~~~~~~~~~~--I~sl~~spdg~-~Lasgs~dg~I~iwDl~t~~~~--~~~~~ 352 (715)
.|+.|++|..||.|++||.+.. ..+..++.|... |..+.+.+.|- .|++|+.||.|++||+|..... ..+..
T Consensus 1220 ~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~ 1299 (1387)
T KOG1517|consen 1220 HGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVA 1299 (1387)
T ss_pred CCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeee
Confidence 3689999999999999998853 346677788887 99999998664 4999999999999999974222 22222
Q ss_pred C---CCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEE-----EeeccCCCEEEEEEcCCCCEEEEEECCCeEEE
Q 005096 353 H---RKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVE-----IHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKF 424 (715)
Q Consensus 353 h---~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~-----~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~i 424 (715)
| .+.++++.++. ...+||+|+. +.|+||++........ +.....+.+.|++|+|..-+||+|+.|.+|.|
T Consensus 1300 ~~~yGs~lTal~VH~-hapiiAsGs~-q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~i 1377 (1387)
T KOG1517|consen 1300 HWEYGSALTALTVHE-HAPIIASGSA-QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSI 1377 (1387)
T ss_pred ccccCccceeeeecc-CCCeeeecCc-ceEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEE
Confidence 2 23599999998 8999999998 8999999865433222 12223457899999999999999999999999
Q ss_pred EecCCC
Q 005096 425 WCRNRP 430 (715)
Q Consensus 425 Wdl~~~ 430 (715)
|...+.
T Consensus 1378 Ys~~k~ 1383 (1387)
T KOG1517|consen 1378 YSCEKP 1383 (1387)
T ss_pred eecCCc
Confidence 987654
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=8.1e-18 Score=187.08 Aligned_cols=287 Identities=17% Similarity=0.275 Sum_probs=219.7
Q ss_pred CCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCC----CceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 005096 142 KNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQS----FNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNM 217 (715)
Q Consensus 142 ~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~----~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~ 217 (715)
.|...++|.++|++++++|++..||.|.||.-.. ......+.-|...|.+++|+.+|.+|++|+.+|.+.+|.+++
T Consensus 203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T 282 (792)
T KOG1963|consen 203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLET 282 (792)
T ss_pred hhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecC
Confidence 4666799999999999999999999999996332 234556777899999999999999999999999999999999
Q ss_pred CceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEeccc-----------CCceEEEEEcCCCCEEE
Q 005096 218 NNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGH-----------GWDVKSVDWHPTKSLLV 286 (715)
Q Consensus 218 ~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~-----------~~~I~si~~spdg~~L~ 286 (715)
++ ...+......|..+.+++|+.+.+....|+.|.+....+.+...++.+. .+-.+.++++|.-+.++
T Consensus 283 ~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~v 361 (792)
T KOG1963|consen 283 GK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLV 361 (792)
T ss_pred CC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCcee
Confidence 88 6666778899999999999999999999999999988666555544332 33467788999777888
Q ss_pred EEeCCCcEEEEECCCCceeEEecc-----------CCCceEEEEEcCCCCEEEEEE--------CCC--eEEEEECCCCe
Q 005096 287 SGGKDSLVKLWDAKSGRELCSFHG-----------HKNMVLCVKWNQNGNWVLTAS--------KDQ--IIKLYDIRAMK 345 (715)
Q Consensus 287 sgs~Dg~I~iwDl~s~~~~~~~~~-----------~~~~I~sl~~spdg~~Lasgs--------~dg--~I~iwDl~t~~ 345 (715)
..+..+.|.+||+-+.+.+..+.. +...+++++.+.+|++++|.- .|| .+++|-.....
T Consensus 362 ln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~ 441 (792)
T KOG1963|consen 362 LNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNS 441 (792)
T ss_pred ecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCc
Confidence 889999999999988776665531 122467788888899999864 233 57788654332
Q ss_pred ----EEEE-eecCCCCeEEEEEccCCCC-EEEEEeCCCcEEEEEcCCCC---------ceEEEeeccCCCEEEEEEcCCC
Q 005096 346 ----ELES-FRGHRKDVTALAWHPFHEE-YFVSGSLDGSIFHWLVGHET---------PQVEIHNVHDNTVWDLAWHPIG 410 (715)
Q Consensus 346 ----~~~~-~~~h~~~V~~l~~sp~~~~-~l~sgs~DG~I~iwd~~~~~---------~~~~~~~~h~~~V~~l~~spdg 410 (715)
...+ ...|+..+...++...... .+++++.||.++||.+.... .+..+-..|...+++++|+.||
T Consensus 442 kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dG 521 (792)
T KOG1963|consen 442 KTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDG 521 (792)
T ss_pred ceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCC
Confidence 2222 2356666655555443333 89999999999999883322 2222333478899999999999
Q ss_pred CEEEEEECCCeEEEEecCCC
Q 005096 411 YLLCSGSNDHTTKFWCRNRP 430 (715)
Q Consensus 411 ~~L~sgs~Dg~I~iWdl~~~ 430 (715)
. |++++.|++|.+||..+.
T Consensus 522 s-lla~s~~~~Itiwd~~~~ 540 (792)
T KOG1963|consen 522 S-LLAVSFDDTITIWDYDTK 540 (792)
T ss_pred c-EEEEecCCEEEEecCCCh
Confidence 6 555667899999999773
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.8e-19 Score=176.68 Aligned_cols=241 Identities=14% Similarity=0.245 Sum_probs=191.7
Q ss_pred CCCccEEEEEEcCC----CCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCC-CEEEEEeCCCcEEEEeCC
Q 005096 142 KNRCSINRVLWTPT----GRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHND-NWMVSGDDGGAIKYWQNN 216 (715)
Q Consensus 142 ~H~~~I~~l~~spd----g~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg-~~L~tgs~dg~I~iwd~~ 216 (715)
.|......++|+-| ..+||+|+.-|.|+|.|+.++++...+.+|...|+.|.+.|+. ++|++++.|.+|++|++.
T Consensus 87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~ 166 (385)
T KOG1034|consen 87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQ 166 (385)
T ss_pred CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEecc
Confidence 47778888898765 3478999999999999999999999999999999999999976 788999999999999999
Q ss_pred CCceeeee---cCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEE----------------------------E
Q 005096 217 MNNVKANK---SAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEER----------------------------S 265 (715)
Q Consensus 217 ~~~~~~~~---~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~----------------------------~ 265 (715)
+..++..+ .+|.+.|.++.|+.++.+|++++.|.+|++|++...+... +
T Consensus 167 ~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst 246 (385)
T KOG1034|consen 167 TDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFST 246 (385)
T ss_pred CCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccc
Confidence 99888876 6799999999999999999999999999999997321110 1
Q ss_pred ecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECC-CCc-------------eeEEeccCCCceEEEE--EcCCCCEEEE
Q 005096 266 LTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAK-SGR-------------ELCSFHGHKNMVLCVK--WNQNGNWVLT 329 (715)
Q Consensus 266 l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~-s~~-------------~~~~~~~~~~~I~sl~--~spdg~~Las 329 (715)
-..|.+.|-|+.|- |+++++-+.++.|..|..- -++ .+.++.-....|+-|. |.+-.++||.
T Consensus 247 ~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~ 324 (385)
T KOG1034|consen 247 TDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLAL 324 (385)
T ss_pred cccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhh
Confidence 12355566666676 7889998889999999761 111 1233333344455554 4556789999
Q ss_pred EECCCeEEEEECCCCeEE--EEe--ecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcC
Q 005096 330 ASKDQIIKLYDIRAMKEL--ESF--RGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVG 385 (715)
Q Consensus 330 gs~dg~I~iwDl~t~~~~--~~~--~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~ 385 (715)
|...|.|.+||++..+.. .++ ......|...+|+. ++.+|+..++|++|.-||..
T Consensus 325 gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~-dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 325 GNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSR-DGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred ccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecc-cCcEEEEEeCCCcEEEEEee
Confidence 999999999999977652 122 23346789999998 89999999999999999863
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.6e-17 Score=175.13 Aligned_cols=269 Identities=10% Similarity=0.104 Sum_probs=183.2
Q ss_pred EEEeCCCeEEEEeCCC-Cc--eEEEEeccCCCEEEEEEcCCCCEEEEEe-CCCcEEEEeCCC-Cceeee-ecCCCCCeEE
Q 005096 160 ITGSQSGEFTLWNGQS-FN--FEMILQAHDHAIRSMVWSHNDNWMVSGD-DGGAIKYWQNNM-NNVKAN-KSAHKESVRD 233 (715)
Q Consensus 160 atgs~dg~I~Iwd~~~-~~--~~~~l~~h~~~V~~l~~spdg~~L~tgs-~dg~I~iwd~~~-~~~~~~-~~~h~~~I~~ 233 (715)
++...++.|++||+.+ ++ .+..+. +.+....+++++++++|++++ .++.|.+|+++. +.+... ..........
T Consensus 6 ~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~ 84 (330)
T PRK11028 6 IASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTH 84 (330)
T ss_pred EEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceE
Confidence 3446789999999964 33 334443 346678899999999987654 578899999873 332211 1123345678
Q ss_pred EEEecCCCEEEEEEC-CCcEEEEECCCCe----eEEEecccCCceEEEEEcCCCCEEEEEe-CCCcEEEEECCCCceeEE
Q 005096 234 LSFCRTDLKFCSCSD-DTTVKVWDFARCQ----EERSLTGHGWDVKSVDWHPTKSLLVSGG-KDSLVKLWDAKSGRELCS 307 (715)
Q Consensus 234 l~~spd~~~Las~s~-Dg~V~iwdl~~~~----~~~~l~~~~~~I~si~~spdg~~L~sgs-~Dg~I~iwDl~s~~~~~~ 307 (715)
+++++++++|++++. ++.|.+||+++.. .+..+. +.....++++++++++|++++ .++.|.+||+++...+..
T Consensus 85 i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~ 163 (330)
T PRK11028 85 ISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVA 163 (330)
T ss_pred EEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccc
Confidence 999999999888775 8899999996422 222222 233567889999999886555 568999999986433211
Q ss_pred -----ec-cCCCceEEEEEcCCCCEEEEEEC-CCeEEEEECCC--C--eEEEEeecC------CCCeEEEEEccCCCCEE
Q 005096 308 -----FH-GHKNMVLCVKWNQNGNWVLTASK-DQIIKLYDIRA--M--KELESFRGH------RKDVTALAWHPFHEEYF 370 (715)
Q Consensus 308 -----~~-~~~~~I~sl~~spdg~~Lasgs~-dg~I~iwDl~t--~--~~~~~~~~h------~~~V~~l~~sp~~~~~l 370 (715)
.. ........++|++|+++|++++. ++.|.+||++. + +.+..+... ......+.++| ++++|
T Consensus 164 ~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~p-dg~~l 242 (330)
T PRK11028 164 QEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITP-DGRHL 242 (330)
T ss_pred cCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECC-CCCEE
Confidence 11 12344678999999999988876 89999999973 2 334443321 12234688999 67777
Q ss_pred EEEe-CCCcEEEEEcCCCCceEEEeec--cCCCEEEEEEcCCCCEEEEEEC-CCeEEEEecCCCC
Q 005096 371 VSGS-LDGSIFHWLVGHETPQVEIHNV--HDNTVWDLAWHPIGYLLCSGSN-DHTTKFWCRNRPG 431 (715)
Q Consensus 371 ~sgs-~DG~I~iwd~~~~~~~~~~~~~--h~~~V~~l~~spdg~~L~sgs~-Dg~I~iWdl~~~~ 431 (715)
+++. .++.|.+|+++......++... -....+.+.|++||++|+++.. +++|.+|+++...
T Consensus 243 yv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~~~ 307 (330)
T PRK11028 243 YACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDGET 307 (330)
T ss_pred EEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEcCCC
Confidence 6664 4789999999765433222211 1224568899999999988775 8999999987543
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1e-16 Score=162.67 Aligned_cols=280 Identities=13% Similarity=0.197 Sum_probs=210.1
Q ss_pred CCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCC--CcEEEEeCCCCce
Q 005096 143 NRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDG--GAIKYWQNNMNNV 220 (715)
Q Consensus 143 H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~d--g~I~iwd~~~~~~ 220 (715)
....|+.+.|+.|...|.+|+.|| .++|+.+..............|.-+-|+ ..++|..+.+ +.++++++..+..
T Consensus 4 ~~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFS--SSLvaiV~~~qpr~Lkv~~~Kk~~~ 80 (391)
T KOG2110|consen 4 KKPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFS--SSLVAIVSIKQPRKLKVVHFKKKTT 80 (391)
T ss_pred CCcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeecc--cceeEEEecCCCceEEEEEcccCce
Confidence 345678888999999999999998 7899887765533333333445555665 4566655544 4589999888877
Q ss_pred eeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEeccc---CCceEEEEEcCCCCEEEEEe--CCCcEE
Q 005096 221 KANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGH---GWDVKSVDWHPTKSLLVSGG--KDSLVK 295 (715)
Q Consensus 221 ~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~---~~~I~si~~spdg~~L~sgs--~Dg~I~ 295 (715)
+..+. ....|.++.++. ++|+++-.+. |+|||+++.+.++++... ...+.+++++.++.+|+.-+ ..|.|.
T Consensus 81 ICe~~-fpt~IL~VrmNr--~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~ 156 (391)
T KOG2110|consen 81 ICEIF-FPTSILAVRMNR--KRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVV 156 (391)
T ss_pred EEEEe-cCCceEEEEEcc--ceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEE
Confidence 76653 466788888854 5677776664 999999999998887643 44567777777777888643 468899
Q ss_pred EEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCe-EEEEECCCCeEEEEeecCC--CCeEEEEEccCCCCEEEE
Q 005096 296 LWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQI-IKLYDIRAMKELESFRGHR--KDVTALAWHPFHEEYFVS 372 (715)
Q Consensus 296 iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~-I~iwDl~t~~~~~~~~~h~--~~V~~l~~sp~~~~~l~s 372 (715)
|||+.+-+.+..+..|++.+.|++|+++|.+||++++.|+ ||||++.++..+.+|+... ..|.+|+|++ +..+|++
T Consensus 157 l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~-ds~~L~~ 235 (391)
T KOG2110|consen 157 LFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSP-DSQFLAA 235 (391)
T ss_pred EEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECC-CCCeEEE
Confidence 9999999999999999999999999999999999999986 6999999999999998544 4588999999 8889999
Q ss_pred EeCCCcEEEEEcCCCCce------------------------------------EEEeecc-CC--CEEEEEEcCCCCEE
Q 005096 373 GSLDGSIFHWLVGHETPQ------------------------------------VEIHNVH-DN--TVWDLAWHPIGYLL 413 (715)
Q Consensus 373 gs~DG~I~iwd~~~~~~~------------------------------------~~~~~~h-~~--~V~~l~~spdg~~L 413 (715)
.++.++|.||.++..... +...... .+ .+..+.-......+
T Consensus 236 sS~TeTVHiFKL~~~~~~~~~~p~~~~~~~~~~sk~~~sylps~V~~~~~~~R~FAt~~l~~s~~~~~~~l~~~~~~~~v 315 (391)
T KOG2110|consen 236 SSNTETVHIFKLEKVSNNPPESPTAGTSWFGKVSKAATSYLPSQVSSVLDQSRKFATAKLPESGRKNICSLSSIQKIPRV 315 (391)
T ss_pred ecCCCeEEEEEecccccCCCCCCCCCCcccchhhhhhhhhcchhhhhhhhhccceeEEEccCCCccceEEeeccCCCCEE
Confidence 999999999988542100 0000000 11 22233323467889
Q ss_pred EEEECCCeEEEEecCCC
Q 005096 414 CSGSNDHTTKFWCRNRP 430 (715)
Q Consensus 414 ~sgs~Dg~I~iWdl~~~ 430 (715)
.+++.||.++.|.++..
T Consensus 316 ~vas~dG~~y~y~l~~~ 332 (391)
T KOG2110|consen 316 LVASYDGHLYSYRLPPK 332 (391)
T ss_pred EEEEcCCeEEEEEcCCC
Confidence 99999999999999764
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.6e-18 Score=182.01 Aligned_cols=263 Identities=13% Similarity=0.280 Sum_probs=199.3
Q ss_pred CCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEE----c----CCCCEEEEEeCCCcEEEE
Q 005096 142 KNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVW----S----HNDNWMVSGDDGGAIKYW 213 (715)
Q Consensus 142 ~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~----s----pdg~~L~tgs~dg~I~iw 213 (715)
.|...|.|+.|+.+...+.+++ |..+.+|+.-+.+....+...+..|....+ + ...+.|+.++.||.+.|.
T Consensus 12 r~~e~vc~v~w~~~eei~~~~d-Dh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il 90 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSD-DHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVIL 90 (737)
T ss_pred ccceeEEeecccccceEEEecc-CceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEe
Confidence 5677778999998876555555 445555543332222222222222221111 0 123578889999999888
Q ss_pred eCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCc
Q 005096 214 QNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSL 293 (715)
Q Consensus 214 d~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~ 293 (715)
+- .+++...+..|.+.|.+-.|++||.-|+++++||.|++|. +++-...++.-....|.|++|.|+.+.++.+. .+.
T Consensus 91 ~k-~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~-g~h 167 (737)
T KOG1524|consen 91 NK-SARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWAPNSNSIVFCQ-GGH 167 (737)
T ss_pred cc-cchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEECCCCCceEEec-CCe
Confidence 63 4566777789999999999999999999999999999998 44544455555677899999999988666654 366
Q ss_pred EEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEE
Q 005096 294 VKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSG 373 (715)
Q Consensus 294 I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sg 373 (715)
+.|=.+.-...+..++.|++-|.|+.|++..++|++|++|-..+|||-. |..+..-..|+..|++++|+| + ..++.+
T Consensus 168 ~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~ITSva~np-d-~~~~v~ 244 (737)
T KOG1524|consen 168 ISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEYAITSVAFNP-E-KDYLLW 244 (737)
T ss_pred EEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc-CcccccCChhccceeeeeecc-c-cceeee
Confidence 8888888777888899999999999999999999999999999999975 888888888999999999999 4 555555
Q ss_pred eCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEE
Q 005096 374 SLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKF 424 (715)
Q Consensus 374 s~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~i 424 (715)
+.+ +++ +.....+.|..++|++||..++.|+..|.|.+
T Consensus 245 S~n-t~R------------~~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 245 SYN-TAR------------FSSPRVGSIFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred eee-eee------------ecCCCccceEEEEEcCCCceeeccccCceEEE
Confidence 533 333 33345778999999999999999999998766
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.6e-17 Score=184.80 Aligned_cols=264 Identities=19% Similarity=0.268 Sum_probs=200.6
Q ss_pred CeEEEEeCCCCceEEEEeccCCCEEEEEEcCC-CCEEEEEeCCCcEEEEeCCCCce--e----eeecCCCCCeEEEEEec
Q 005096 166 GEFTLWNGQSFNFEMILQAHDHAIRSMVWSHN-DNWMVSGDDGGAIKYWQNNMNNV--K----ANKSAHKESVRDLSFCR 238 (715)
Q Consensus 166 g~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spd-g~~L~tgs~dg~I~iwd~~~~~~--~----~~~~~h~~~I~~l~~sp 238 (715)
+.+.||+++..............|.|++|++. .++|+.|..+|.|.+||+..+.. . .....|...|+.+.|..
T Consensus 222 ~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~ 301 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQ 301 (555)
T ss_pred ceEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEec
Confidence 47999999887444444445788999999986 46778899999999999987654 2 22356889999999977
Q ss_pred CCCE--EEEEECCCcEEEEECCCCeeEE------Eec------ccCCceEEEEEcCCC-CEEEEEeCCCcEEEEEC---C
Q 005096 239 TDLK--FCSCSDDTTVKVWDFARCQEER------SLT------GHGWDVKSVDWHPTK-SLLVSGGKDSLVKLWDA---K 300 (715)
Q Consensus 239 d~~~--Las~s~Dg~V~iwdl~~~~~~~------~l~------~~~~~I~si~~spdg-~~L~sgs~Dg~I~iwDl---~ 300 (715)
+..- |++++.||.|..|+++...... ... .....+++++|.+.. +.|++|+++|.|..-+- +
T Consensus 302 ~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~ 381 (555)
T KOG1587|consen 302 NEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYT 381 (555)
T ss_pred cCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCc
Confidence 5444 9999999999999986433210 111 123468899998744 57899999999877332 2
Q ss_pred CCc-----eeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECC-CCeEEEEeecCCCCeEEEEEccCCCCEEEEEe
Q 005096 301 SGR-----ELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIR-AMKELESFRGHRKDVTALAWHPFHEEYFVSGS 374 (715)
Q Consensus 301 s~~-----~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~-t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs 374 (715)
... ....+..|.+.|+++.++|-+..++..+.|.+|+||... ....+..+..+...|++++|||....+|+++.
T Consensus 382 ~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d 461 (555)
T KOG1587|consen 382 PAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVD 461 (555)
T ss_pred ccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEc
Confidence 222 123445688999999999976655555559999999988 77778888888888999999998889999999
Q ss_pred CCCcEEEEEcCCCCc-eEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCC
Q 005096 375 LDGSIFHWLVGHETP-QVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNR 429 (715)
Q Consensus 375 ~DG~I~iwd~~~~~~-~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~ 429 (715)
.||.|.|||+..... .......+....+.+.|+.+|++|++|...|++.+|++..
T Consensus 462 ~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 462 GDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred CCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 999999999965432 2222223356677888998999999999999999999953
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.80 E-value=6e-18 Score=173.26 Aligned_cols=280 Identities=20% Similarity=0.297 Sum_probs=205.4
Q ss_pred eehhhheeeEEEEEeccCCCccccccCchhhhcCccceeecCCCCCceeeeEEEEecCCCCccEEEEEEcCCCCEEEEEe
Q 005096 84 YTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSFAAKFVHTSLNKNRCSINRVLWTPTGRRLITGS 163 (715)
Q Consensus 84 ~~~~~~~~~~irvW~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~~l~~spdg~~Latgs 163 (715)
.+.+...+.+||+|...+.+...-. ........|..|...|++|.|+++|++||+|+
T Consensus 28 ~laT~G~D~~iriW~v~r~~~~~~~-----------------------~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~ 84 (434)
T KOG1009|consen 28 KLATAGGDKDIRIWKVNRSEPGGGD-----------------------MKVEYLSSLSRHTRAVNVVRFSPDGELLASGG 84 (434)
T ss_pred ceecccCccceeeeeeeecCCCCCc-----------------------eeEEEeecccCCcceeEEEEEcCCcCeeeecC
Confidence 5667778889999987655422110 11123457889999999999999999999999
Q ss_pred CCCeEEEEeCC--------C--------CceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeecCC
Q 005096 164 QSGEFTLWNGQ--------S--------FNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAH 227 (715)
Q Consensus 164 ~dg~I~Iwd~~--------~--------~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~~h 227 (715)
.+|.|.||... + +...+.+.+|...|..++|++|+.++++++.|..+++||+..+.+...+..|
T Consensus 85 D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh 164 (434)
T KOG1009|consen 85 DGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDH 164 (434)
T ss_pred CCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeecccc
Confidence 99999999654 2 3456778889999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEec----------c---------c----CCceEEEEEcCCCCE
Q 005096 228 KESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLT----------G---------H----GWDVKSVDWHPTKSL 284 (715)
Q Consensus 228 ~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~----------~---------~----~~~I~si~~spdg~~ 284 (715)
...+..++|.+-+.++++-+.|...+++++.....+.... . | ......++|+|||.+
T Consensus 165 ~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~l 244 (434)
T KOG1009|consen 165 EHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSL 244 (434)
T ss_pred ccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcE
Confidence 9999999999999999999988877777664332221111 0 1 122456789999998
Q ss_pred EEEEeC----CC-----cEEEEECCC-CceeEEeccCCCceEEEEEcC------------------CCCEEEEEECCCeE
Q 005096 285 LVSGGK----DS-----LVKLWDAKS-GRELCSFHGHKNMVLCVKWNQ------------------NGNWVLTASKDQII 336 (715)
Q Consensus 285 L~sgs~----Dg-----~I~iwDl~s-~~~~~~~~~~~~~I~sl~~sp------------------dg~~Lasgs~dg~I 336 (715)
|++.+. ++ +.++|+-+. .+.+..+.........+.|++ -+-.+|+++ .+.|
T Consensus 245 lvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt-~~sv 323 (434)
T KOG1009|consen 245 LVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIAT-KNSV 323 (434)
T ss_pred EEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEee-cceE
Confidence 887542 22 234444322 223333433334444444432 222344554 5689
Q ss_pred EEEECCCCeEEEEee-cCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCC
Q 005096 337 KLYDIRAMKELESFR-GHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHET 388 (715)
Q Consensus 337 ~iwDl~t~~~~~~~~-~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~ 388 (715)
.|||..+.+.+.... .|-..|+.++|+. ++..|+..+.||...+..++..+
T Consensus 324 yvydtq~~~P~~~v~nihy~~iTDiaws~-dg~~l~vSS~DGyCS~vtfe~~e 375 (434)
T KOG1009|consen 324 YVYDTQTLEPLAVVDNIHYSAITDIAWSD-DGSVLLVSSTDGFCSLVTFEPWE 375 (434)
T ss_pred EEeccccccceEEEeeeeeeeecceeecC-CCcEEEEeccCCceEEEEEcchh
Confidence 999999888776654 5778999999998 89999999999988877765543
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.5e-18 Score=172.14 Aligned_cols=207 Identities=23% Similarity=0.403 Sum_probs=168.4
Q ss_pred eecCCCCCeEEEEEec-CCCEEEEEECCCcEEEEECCCC-------eeEEEecccCCceEEEEEcCCC-CEEEEEeCCCc
Q 005096 223 NKSAHKESVRDLSFCR-TDLKFCSCSDDTTVKVWDFARC-------QEERSLTGHGWDVKSVDWHPTK-SLLVSGGKDSL 293 (715)
Q Consensus 223 ~~~~h~~~I~~l~~sp-d~~~Las~s~Dg~V~iwdl~~~-------~~~~~l~~~~~~I~si~~spdg-~~L~sgs~Dg~ 293 (715)
.+.+|...|.+++|+| ++..||+|++|.+|.||++-.. +.+..+.+|...|..|+|+|.. +.|++++.|.+
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 4578999999999999 5677999999999999998443 3467788999999999999964 58899999999
Q ss_pred EEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCC-eEEEEEccCCCCEEEE
Q 005096 294 VKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKD-VTALAWHPFHEEYFVS 372 (715)
Q Consensus 294 I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~-V~~l~~sp~~~~~l~s 372 (715)
|.|||+.+++.+.++. |...|.+++|+.||.+|++.+.|+.|+|||.++++.+.+-.+|.+. -..+.|.. ++.++.|
T Consensus 156 v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~-~g~i~tT 233 (472)
T KOG0303|consen 156 VSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLA-SGKIFTT 233 (472)
T ss_pred EEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEec-cCceeee
Confidence 9999999999999988 9999999999999999999999999999999999999998888753 33444544 5665555
Q ss_pred Ee---CCCcEEEEEcCCCCceEEEe-eccCCCEEEEEEcCCCCEEEEEE-CCCeEEEEecCCCC
Q 005096 373 GS---LDGSIFHWLVGHETPQVEIH-NVHDNTVWDLAWHPIGYLLCSGS-NDHTTKFWCRNRPG 431 (715)
Q Consensus 373 gs---~DG~I~iwd~~~~~~~~~~~-~~h~~~V~~l~~spdg~~L~sgs-~Dg~I~iWdl~~~~ 431 (715)
|- .+..+-+||-.+-.....+. ....+.|.---|.+|..+|+.++ .|+.||.|.+..+.
T Consensus 234 Gfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 234 GFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred ccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence 53 46789999986655443332 23455677777888887776655 59999999987655
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.3e-18 Score=181.64 Aligned_cols=238 Identities=16% Similarity=0.306 Sum_probs=193.9
Q ss_pred EecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 005096 138 TSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNM 217 (715)
Q Consensus 138 ~~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~ 217 (715)
.++++|++.|+|++|+.||+++|+|+.|..|.||+-+-...++ ..|.+.|.|+.|+|-...|++++-+ ..-+|..+.
T Consensus 47 qtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~Lk--YSH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~q 123 (1081)
T KOG1538|consen 47 QPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILK--YSHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQ 123 (1081)
T ss_pred cccccccceEEEEEEccCCceeccCCCceeEEEecccccceee--eccCCeeeEeecCchHHHhhhcchh-hccccChhh
Confidence 4789999999999999999999999999999999855322222 3589999999999999999988763 567897765
Q ss_pred CceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEec---ccCCceEEEEEcCCC-----CEEEEEe
Q 005096 218 NNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLT---GHGWDVKSVDWHPTK-----SLLVSGG 289 (715)
Q Consensus 218 ~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~---~~~~~I~si~~spdg-----~~L~sgs 289 (715)
..+... .....|.+++|..||.+|+.|-.||+|.|-+-. ++....+. +....|.+|+|+|.. ..+++..
T Consensus 124 K~V~K~--kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~-gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~D 200 (1081)
T KOG1538|consen 124 KSVSKH--KSSSRIICCSWTNDGQYLALGMFNGTISIRNKN-GEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVAD 200 (1081)
T ss_pred hhHHhh--hhheeEEEeeecCCCcEEEEeccCceEEeecCC-CCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEe
Confidence 544332 345678999999999999999999999998753 33333333 366789999999863 4788888
Q ss_pred CCCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCE
Q 005096 290 KDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEY 369 (715)
Q Consensus 290 ~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~ 369 (715)
...++.+|.+. |+.+.+-+...-.-.|+.+.++|.+++.|+.|+.+++|. +.|-.+.++...+..|..++..| ++.+
T Consensus 201 W~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~P-NsQ~ 277 (1081)
T KOG1538|consen 201 WGQTLSFYQLS-GKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQAKP-NSQY 277 (1081)
T ss_pred ccceeEEEEec-ceeecccccCCCCchhheeccCCcEEEEccCCCceEEEe-ecCeEEeeccccceeEEEEEEcc-CCce
Confidence 88899988876 555544444455678999999999999999999999997 55888888888899999999999 8999
Q ss_pred EEEEeCCCcEEEEEc
Q 005096 370 FVSGSLDGSIFHWLV 384 (715)
Q Consensus 370 l~sgs~DG~I~iwd~ 384 (715)
++.|+.||+|..|++
T Consensus 278 v~~GCqDGTiACyNl 292 (1081)
T KOG1538|consen 278 VVVGCQDGTIACYNL 292 (1081)
T ss_pred EEEEEccCeeehhhh
Confidence 999999999988865
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.6e-17 Score=165.57 Aligned_cols=232 Identities=16% Similarity=0.272 Sum_probs=181.7
Q ss_pred CCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCC---CceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCC
Q 005096 143 NRCSINRVLWTPTGRRLITGSQSGEFTLWNGQS---FNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQN-NMN 218 (715)
Q Consensus 143 H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~---~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~-~~~ 218 (715)
-..+|+|.+|+.|+..+|++..+..|.||.... .+...++..|+..|+.|+|++..+.|++|+.|..-+||.. +.+
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~ 88 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGG 88 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCC
Confidence 457899999999999999999999999998654 4578889999999999999999999999999999999988 433
Q ss_pred c--eeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeE----EEecccCCceEEEEEcCCCCEEEEEeCCC
Q 005096 219 N--VKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEE----RSLTGHGWDVKSVDWHPTKSLLVSGGKDS 292 (715)
Q Consensus 219 ~--~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~----~~l~~~~~~I~si~~spdg~~L~sgs~Dg 292 (715)
+ ....+..++..++++.|+|.++.||+++....|.||-++....- +.-+.+...|++++|++++-+|++|+.|+
T Consensus 89 ~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~ 168 (361)
T KOG1523|consen 89 TWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDG 168 (361)
T ss_pred eeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCc
Confidence 2 33445567889999999999999999999999999988653321 12233567899999999999999999999
Q ss_pred cEEEEEC-----CC-------------CceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCe-EEEEeecC
Q 005096 293 LVKLWDA-----KS-------------GRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMK-ELESFRGH 353 (715)
Q Consensus 293 ~I~iwDl-----~s-------------~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~-~~~~~~~h 353 (715)
..++|.. ++ |..+.++....++|..+.|+++|+.|+..+.|..|.+-|..... .+..+...
T Consensus 169 k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~~~~~ 248 (361)
T KOG1523|consen 169 KCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQSVATA 248 (361)
T ss_pred ceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhccchhhc
Confidence 9999853 21 12233444567889999999999999999999999999987654 34444434
Q ss_pred CCCeEEEEEccCCCCEEEEEeCC
Q 005096 354 RKDVTALAWHPFHEEYFVSGSLD 376 (715)
Q Consensus 354 ~~~V~~l~~sp~~~~~l~sgs~D 376 (715)
.-...++.|.. +..++.++.|
T Consensus 249 ~lP~ls~~~is--e~~vv~ag~~ 269 (361)
T KOG1523|consen 249 QLPLLSVSWIS--ENSVVAAGYD 269 (361)
T ss_pred cCCceeeEeec--CCceeecCCC
Confidence 45666666653 3334444443
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.3e-18 Score=184.71 Aligned_cols=251 Identities=21% Similarity=0.324 Sum_probs=192.5
Q ss_pred eEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCC--------CceeeeecCCCCCeEEEEEecCCCEEEEEECC
Q 005096 178 FEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNM--------NNVKANKSAHKESVRDLSFCRTDLKFCSCSDD 249 (715)
Q Consensus 178 ~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~--------~~~~~~~~~h~~~I~~l~~spd~~~Las~s~D 249 (715)
...++..|...|+.++|.+....|++++.||+|++|++.. -+.+.++.+|.+.|.|+++..++..+++|+.|
T Consensus 286 ik~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~D 365 (577)
T KOG0642|consen 286 IKFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGID 365 (577)
T ss_pred eeeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccC
Confidence 3446777889999999999999999999999999999832 13566788999999999999999999999999
Q ss_pred CcEEEEECC------C----CeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCC--CceEE
Q 005096 250 TTVKVWDFA------R----CQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHK--NMVLC 317 (715)
Q Consensus 250 g~V~iwdl~------~----~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~--~~I~s 317 (715)
|+|+.|++- + ......+.+|.+.|+.++++.....|++++.||++++|+...... +++.... ..-.+
T Consensus 366 g~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Pls 444 (577)
T KOG0642|consen 366 GTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLS 444 (577)
T ss_pred ceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcce
Confidence 999999652 1 123456788999999999999999999999999999999876554 3343222 22344
Q ss_pred EEEcCCC-CEEEEEECCCeEEEEECCCCeEEEEeecC-------CCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCc
Q 005096 318 VKWNQNG-NWVLTASKDQIIKLYDIRAMKELESFRGH-------RKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETP 389 (715)
Q Consensus 318 l~~spdg-~~Lasgs~dg~I~iwDl~t~~~~~~~~~h-------~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~ 389 (715)
+.+-... ...++...-+.-.++|+.....+..+... ...+..+.+++ +..+.+++..|+.|+++|..++..
T Consensus 445 vd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~-~~~~~~~~hed~~Ir~~dn~~~~~ 523 (577)
T KOG0642|consen 445 VDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHP-TADITFTAHEDRSIRFFDNKTGKI 523 (577)
T ss_pred EeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecC-CCCeeEecccCCceeccccccccc
Confidence 5554322 22223333333444455544444444321 23477888888 779999999999999999988887
Q ss_pred eEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCCCC
Q 005096 390 QVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPG 431 (715)
Q Consensus 390 ~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~ 431 (715)
+.... .|...|+++++.++|-+|++++.|+.|++|+++...
T Consensus 524 l~s~~-a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~ 564 (577)
T KOG0642|consen 524 LHSMV-AHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKT 564 (577)
T ss_pred chhee-eccceecceeecCCCceEEeecCCceeehhhccchh
Confidence 76665 588999999999999999999999999999986533
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.2e-17 Score=168.23 Aligned_cols=246 Identities=20% Similarity=0.267 Sum_probs=185.4
Q ss_pred EEeccCCCEEEEEEcCC-CCEEEEEeCCCcEEEEeCCCC-------ceeeeecCCCCCeEEEEEecCC-CEEEEEECCCc
Q 005096 181 ILQAHDHAIRSMVWSHN-DNWMVSGDDGGAIKYWQNNMN-------NVKANKSAHKESVRDLSFCRTD-LKFCSCSDDTT 251 (715)
Q Consensus 181 ~l~~h~~~V~~l~~spd-g~~L~tgs~dg~I~iwd~~~~-------~~~~~~~~h~~~I~~l~~spd~-~~Las~s~Dg~ 251 (715)
.+.+|.+.|..++|+|. +..||+|++|.+|.||++-.+ +.+..+.+|...|-.+.|++.. +.|++++.|.+
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 46789999999999984 577899999999999997654 3466778999999999999964 67899999999
Q ss_pred EEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCC-ceEEEEEcCCCCEEEEE
Q 005096 252 VKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKN-MVLCVKWNQNGNWVLTA 330 (715)
Q Consensus 252 V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~-~I~sl~~spdg~~Lasg 330 (715)
|.|||+.+++.+.++. |.+.|.+++|+.||.+|++++.|..|+|||.++++.+..-.+|.+ .-..+.|..+++++-+|
T Consensus 156 v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTG 234 (472)
T KOG0303|consen 156 VSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTG 234 (472)
T ss_pred EEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeec
Confidence 9999999999998888 999999999999999999999999999999999999988766654 34556677788855555
Q ss_pred E---CCCeEEEEECCCCeEEEEee--cCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeec--cCCCEEE
Q 005096 331 S---KDQIIKLYDIRAMKELESFR--GHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNV--HDNTVWD 403 (715)
Q Consensus 331 s---~dg~I~iwDl~t~~~~~~~~--~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~--h~~~V~~ 403 (715)
. .+..|-|||-.+.+.-..+. ...+.|.---|.++..-+.++|-.|+.|+.|.+......+..+.. ....-..
T Consensus 235 fsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S~epQRG 314 (472)
T KOG0303|consen 235 FSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSSKEPQRG 314 (472)
T ss_pred cccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEecccccCCcccc
Confidence 3 56789999987655432222 234456666677744445556668999999999887755554432 2334556
Q ss_pred EEEcCCCCEEEEEECCCeEEEEecCC
Q 005096 404 LAWHPIGYLLCSGSNDHTTKFWCRNR 429 (715)
Q Consensus 404 l~~spdg~~L~sgs~Dg~I~iWdl~~ 429 (715)
+.|-|...+ -.+.....++|++..
T Consensus 315 ~g~mPKRGl--~Vs~cEI~rfyKl~~ 338 (472)
T KOG0303|consen 315 MGFMPKRGL--DVSKCEIARFYKLHE 338 (472)
T ss_pred ccccccccc--cchHHHHHHHHHhhc
Confidence 667665322 223333455555543
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.8e-17 Score=161.97 Aligned_cols=205 Identities=22% Similarity=0.384 Sum_probs=162.3
Q ss_pred ecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECC----CCeeEEEecccCCceEEEEEcC--CCCEEEEEeCCCcEEEE
Q 005096 224 KSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFA----RCQEERSLTGHGWDVKSVDWHP--TKSLLVSGGKDSLVKLW 297 (715)
Q Consensus 224 ~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~----~~~~~~~l~~~~~~I~si~~sp--dg~~L~sgs~Dg~I~iw 297 (715)
..+|.+-|.++.|...|+++|+|+.|.+|+|||.+ +..+....+.|.+.|..|.|.+ -|..+++++.|+++.||
T Consensus 9 ~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iW 88 (361)
T KOG2445|consen 9 DSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIW 88 (361)
T ss_pred ccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeee
Confidence 35788999999999999999999999999999964 3456667788999999999965 47899999999999999
Q ss_pred ECC---------CCceeEEeccCCCceEEEEEcC--CCCEEEEEECCCeEEEEECCC------CeEEEEee-------cC
Q 005096 298 DAK---------SGRELCSFHGHKNMVLCVKWNQ--NGNWVLTASKDQIIKLYDIRA------MKELESFR-------GH 353 (715)
Q Consensus 298 Dl~---------s~~~~~~~~~~~~~I~sl~~sp--dg~~Lasgs~dg~I~iwDl~t------~~~~~~~~-------~h 353 (715)
.-. ......++......|+.|+|.| -|-.|++++.||.||||+.-. +....++. .+
T Consensus 89 EE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~ 168 (361)
T KOG2445|consen 89 EEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKN 168 (361)
T ss_pred eecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccc
Confidence 641 1223455667788999999999 467899999999999998643 33333333 45
Q ss_pred CCCeEEEEEccC--CCCEEEEEeCC-----CcEEEEEcCCCCc---eEEEeeccCCCEEEEEEcCC-C---CEEEEEECC
Q 005096 354 RKDVTALAWHPF--HEEYFVSGSLD-----GSIFHWLVGHETP---QVEIHNVHDNTVWDLAWHPI-G---YLLCSGSND 419 (715)
Q Consensus 354 ~~~V~~l~~sp~--~~~~l~sgs~D-----G~I~iwd~~~~~~---~~~~~~~h~~~V~~l~~spd-g---~~L~sgs~D 419 (715)
.....|+.|++. ...+|++|+.+ +.++||..+.... .+..+.+|...|++|+|.|+ | .+||+++.|
T Consensus 169 ~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kD 248 (361)
T KOG2445|consen 169 KQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKD 248 (361)
T ss_pred cCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecC
Confidence 667889999873 24578888876 5899998876552 22234578999999999997 3 689999999
Q ss_pred CeEEEEecCC
Q 005096 420 HTTKFWCRNR 429 (715)
Q Consensus 420 g~I~iWdl~~ 429 (715)
| |+||++..
T Consensus 249 g-v~I~~v~~ 257 (361)
T KOG2445|consen 249 G-VRIFKVKV 257 (361)
T ss_pred c-EEEEEEee
Confidence 9 99999974
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.2e-18 Score=179.74 Aligned_cols=291 Identities=21% Similarity=0.313 Sum_probs=224.3
Q ss_pred EEEecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEE-eccCCCEEEEEEcCC--CCEEEEEeCCCcEEE
Q 005096 136 VHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMIL-QAHDHAIRSMVWSHN--DNWMVSGDDGGAIKY 212 (715)
Q Consensus 136 ~~~~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l-~~h~~~V~~l~~spd--g~~L~tgs~dg~I~i 212 (715)
+...|.+|.+.|+.|.|+..|..|++|+.|..|.+||..+.+....+ .+|...|....|-|. ...|++++.||.|++
T Consensus 134 l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~ 213 (559)
T KOG1334|consen 134 LQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRV 213 (559)
T ss_pred hhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceee
Confidence 45678999999999999999999999999999999999887766554 468888888888764 578899999999998
Q ss_pred EeCCCC-ce--eeeecCCCCCeEEEEEecCC-CEEEEEECCCcEEEEECCCCeeEEEec---ccCC---ceEEEEEcCCC
Q 005096 213 WQNNMN-NV--KANKSAHKESVRDLSFCRTD-LKFCSCSDDTTVKVWDFARCQEERSLT---GHGW---DVKSVDWHPTK 282 (715)
Q Consensus 213 wd~~~~-~~--~~~~~~h~~~I~~l~~spd~-~~Las~s~Dg~V~iwdl~~~~~~~~l~---~~~~---~I~si~~spdg 282 (715)
=.+... .+ ...+..|.+.|..++.-|+. ..|.+++.|+.|.-+|++.......+. .+.. ...+|+.+|..
T Consensus 214 s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~n 293 (559)
T KOG1334|consen 214 SEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRN 293 (559)
T ss_pred eeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCC
Confidence 875443 22 33456789999999999876 458999999999999997654433332 2222 46788888866
Q ss_pred C-EEEEEeCCCcEEEEECCCCce------eEEec------cCCCceEEEEEcCCCCEEEEEECCCeEEEEECCC--C---
Q 005096 283 S-LLVSGGKDSLVKLWDAKSGRE------LCSFH------GHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRA--M--- 344 (715)
Q Consensus 283 ~-~L~sgs~Dg~I~iwDl~s~~~------~~~~~------~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t--~--- 344 (715)
. .+++++.|-.+++||.+.-.. +..+. ...-.|+|++|+.++.-|+++..|-.|++|.-.. +
T Consensus 294 t~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p 373 (559)
T KOG1334|consen 294 TNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEP 373 (559)
T ss_pred ccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCC
Confidence 5 899999999999999875221 22222 2334699999998887777777888999995322 2
Q ss_pred -------eEEEE-eecCCC--CeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEE
Q 005096 345 -------KELES-FRGHRK--DVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLC 414 (715)
Q Consensus 345 -------~~~~~-~~~h~~--~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~ 414 (715)
..+.. +++|.. .|..+.|---..+++++|++-|.|.||+-.+...+..+. +....|+||.-+|.--+||
T Consensus 374 ~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~Me-gDr~VVNCLEpHP~~PvLA 452 (559)
T KOG1334|consen 374 DPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFME-GDRHVVNCLEPHPHLPVLA 452 (559)
T ss_pred CCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhh-cccceEeccCCCCCCchhh
Confidence 12233 777764 477777643268999999999999999987776554444 3444899999999999999
Q ss_pred EEECCCeEEEEec
Q 005096 415 SGSNDHTTKFWCR 427 (715)
Q Consensus 415 sgs~Dg~I~iWdl 427 (715)
+++.|..|+||.-
T Consensus 453 sSGid~DVKIWTP 465 (559)
T KOG1334|consen 453 SSGIDHDVKIWTP 465 (559)
T ss_pred ccCCccceeeecC
Confidence 9999999999976
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.9e-16 Score=176.27 Aligned_cols=301 Identities=18% Similarity=0.262 Sum_probs=226.8
Q ss_pred eeeeEEEEecCCCCccEEEEEEcCCC---CEEEEEeCCCeEEEEeCCCCceEEEE-------------------------
Q 005096 131 FAAKFVHTSLNKNRCSINRVLWTPTG---RRLITGSQSGEFTLWNGQSFNFEMIL------------------------- 182 (715)
Q Consensus 131 ~~~~~~~~~l~~H~~~I~~l~~spdg---~~Latgs~dg~I~Iwd~~~~~~~~~l------------------------- 182 (715)
..+..+.+.+.+|...++.+.+.+.. .++++++.||+|++||...+++++++
T Consensus 44 ~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s 123 (792)
T KOG1963|consen 44 TATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPVHALVYKPAQADISANVYVS 123 (792)
T ss_pred cchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCceeEEEechhHhCccceeEee
Confidence 33444556889999999999998854 46779999999999986654332221
Q ss_pred ------------------------------------------------------------------------------ec
Q 005096 183 ------------------------------------------------------------------------------QA 184 (715)
Q Consensus 183 ------------------------------------------------------------------------------~~ 184 (715)
..
T Consensus 124 ~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~ 203 (792)
T KOG1963|consen 124 VEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIVHMCKIHIYFVPKHTKHTSSRDITVH 203 (792)
T ss_pred cccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEEEeeeEEEEEecccceeeccchhhhh
Confidence 12
Q ss_pred cCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCC----CceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCC
Q 005096 185 HDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNM----NNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARC 260 (715)
Q Consensus 185 h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~----~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~ 260 (715)
|...++|.++++++++++++..||.|.+|.-.. ......+.-|.+.|.+++|+.+|.+|++|+.++.+.+|.++++
T Consensus 204 Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~ 283 (792)
T KOG1963|consen 204 HTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETG 283 (792)
T ss_pred hcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCC
Confidence 334568899999999999999999999996432 2344566789999999999999999999999999999999998
Q ss_pred eeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEecc-----------CCCceEEEEEcCCCCEEEE
Q 005096 261 QEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHG-----------HKNMVLCVKWNQNGNWVLT 329 (715)
Q Consensus 261 ~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~-----------~~~~I~sl~~spdg~~Las 329 (715)
+ ...+..-...|..+.+++|+++.++...|+.|.+....+.....++.+ ..+-.+.++++|.-+.++.
T Consensus 284 ~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vl 362 (792)
T KOG1963|consen 284 K-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVL 362 (792)
T ss_pred C-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceee
Confidence 7 555666788999999999999999999999999997755444333322 1334677889997777888
Q ss_pred EECCCeEEEEECCCCeEEEEeec-----CC------CCeEEEEEccCCCCEEEEEe--------CCC--cEEEEEcCCCC
Q 005096 330 ASKDQIIKLYDIRAMKELESFRG-----HR------KDVTALAWHPFHEEYFVSGS--------LDG--SIFHWLVGHET 388 (715)
Q Consensus 330 gs~dg~I~iwDl~t~~~~~~~~~-----h~------~~V~~l~~sp~~~~~l~sgs--------~DG--~I~iwd~~~~~ 388 (715)
.+..+.|.+||+-+.+.+..+.. +. ..++.++.+. .+.+++|.- .|| .+++|-.+...
T Consensus 363 n~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~-~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~ 441 (792)
T KOG1963|consen 363 NGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSR-FGSWMATLEARIDKFNFFDGEVSLKFWQYNPNS 441 (792)
T ss_pred cCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhc-cceEEEEeeeeehhhhccCceEEEEEEEEcCCc
Confidence 88999999999988777655531 12 2366777777 488888763 233 58899776554
Q ss_pred ce----EEEeeccCCCEEEEEEcCC-C-CEEEEEECCCeEEEEecCCCCCc
Q 005096 389 PQ----VEIHNVHDNTVWDLAWHPI-G-YLLCSGSNDHTTKFWCRNRPGDT 433 (715)
Q Consensus 389 ~~----~~~~~~h~~~V~~l~~spd-g-~~L~sgs~Dg~I~iWdl~~~~~~ 433 (715)
.. .++...|+..+...++... . ..+++++.||.++||.+....+.
T Consensus 442 kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~ 492 (792)
T KOG1963|consen 442 KTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNI 492 (792)
T ss_pred ceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEeccccc
Confidence 33 3355668877777666543 2 37999999999999999655443
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.3e-17 Score=167.60 Aligned_cols=197 Identities=19% Similarity=0.280 Sum_probs=164.8
Q ss_pred EEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEec--
Q 005096 232 RDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFH-- 309 (715)
Q Consensus 232 ~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~-- 309 (715)
.+++|+.++..|++++.||++|||+..+...+.....|...|.+++|++|+++|++.+.| ..+|||++++..+....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~ 226 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF 226 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence 789999999999999999999999988888888888899999999999999999999999 89999999997776654
Q ss_pred cCCCceEEEEEcCCC---CE--EEEEECCCeEEEEECCCCeE-----EEEeecCCCCeEEEEEccCCCCEEEEEeCCCcE
Q 005096 310 GHKNMVLCVKWNQNG---NW--VLTASKDQIIKLYDIRAMKE-----LESFRGHRKDVTALAWHPFHEEYFVSGSLDGSI 379 (715)
Q Consensus 310 ~~~~~I~sl~~spdg---~~--Lasgs~dg~I~iwDl~t~~~-----~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I 379 (715)
..+..+..+.|+.|+ .+ ++.....+.|++||+..++. ..........|++++++. ++++++.|+.||.|
T Consensus 227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~-dGkf~AlGT~dGsV 305 (398)
T KOG0771|consen 227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSD-DGKFLALGTMDGSV 305 (398)
T ss_pred ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcC-CCcEEEEeccCCcE
Confidence 234457778888877 33 23333456777777754433 222233456899999998 99999999999999
Q ss_pred EEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCCC
Q 005096 380 FHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRP 430 (715)
Q Consensus 380 ~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~ 430 (715)
.|++..+-.....+...|...|+.+.|+||.+++++.+.|..+.|..+.-+
T Consensus 306 ai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~vd 356 (398)
T KOG0771|consen 306 AIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAVD 356 (398)
T ss_pred EEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEeec
Confidence 999999888888888899999999999999999999999999999988653
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.9e-16 Score=159.43 Aligned_cols=238 Identities=16% Similarity=0.220 Sum_probs=187.4
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECC--CcEEEEECCCCeeE
Q 005096 186 DHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDD--TTVKVWDFARCQEE 263 (715)
Q Consensus 186 ~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~D--g~V~iwdl~~~~~~ 263 (715)
...+..+.|+.|...|.+|+.|| .++|+.+..............|..+-|+ ..++|..+.+ ..+++++++....+
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFS--SSLvaiV~~~qpr~Lkv~~~Kk~~~I 81 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFS--SSLVAIVSIKQPRKLKVVHFKKKTTI 81 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeecc--cceeEEEecCCCceEEEEEcccCceE
Confidence 34567778998888899999887 4778776655433333334445555564 4456655554 45999999888777
Q ss_pred EEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEecc---CCCceEEEEEcCCCCEEEEE--ECCCeEEE
Q 005096 264 RSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHG---HKNMVLCVKWNQNGNWVLTA--SKDQIIKL 338 (715)
Q Consensus 264 ~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~---~~~~I~sl~~spdg~~Lasg--s~dg~I~i 338 (715)
..+. ....|.+|.++ .++|+++-++. |+|||+++.+.+.++.. +...+.+++++.++.||+.- ...|.|.|
T Consensus 82 Ce~~-fpt~IL~VrmN--r~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l 157 (391)
T KOG2110|consen 82 CEIF-FPTSILAVRMN--RKRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVL 157 (391)
T ss_pred EEEe-cCCceEEEEEc--cceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEE
Confidence 7765 56678899987 45677776655 99999999998887753 34457777777777898863 35789999
Q ss_pred EECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCc-EEEEEcCCCCceEEEeeccC-CCEEEEEEcCCCCEEEEE
Q 005096 339 YDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGS-IFHWLVGHETPQVEIHNVHD-NTVWDLAWHPIGYLLCSG 416 (715)
Q Consensus 339 wDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~-I~iwd~~~~~~~~~~~~~h~-~~V~~l~~spdg~~L~sg 416 (715)
||+.+.+.+..+..|++.+-+++|++ ++.+|||+++.|+ ||||.+.++..+.++..+-. ..|.+|+|++|+.+|++.
T Consensus 158 ~d~~nl~~v~~I~aH~~~lAalafs~-~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~s 236 (391)
T KOG2110|consen 158 FDTINLQPVNTINAHKGPLAALAFSP-DGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAAS 236 (391)
T ss_pred EEcccceeeeEEEecCCceeEEEECC-CCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEe
Confidence 99999999999999999999999999 9999999999997 89999999988888776532 468899999999999999
Q ss_pred ECCCeEEEEecCCCC
Q 005096 417 SNDHTTKFWCRNRPG 431 (715)
Q Consensus 417 s~Dg~I~iWdl~~~~ 431 (715)
++.++|+||++++..
T Consensus 237 S~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 237 SNTETVHIFKLEKVS 251 (391)
T ss_pred cCCCeEEEEEecccc
Confidence 999999999997654
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.5e-15 Score=163.29 Aligned_cols=239 Identities=9% Similarity=0.124 Sum_probs=163.2
Q ss_pred ccEEEEEEcCCCCEEEEEe-CCCeEEEEeCCC-Cce--EEEEeccCCCEEEEEEcCCCCEEEEEeC-CCcEEEEeCCCCc
Q 005096 145 CSINRVLWTPTGRRLITGS-QSGEFTLWNGQS-FNF--EMILQAHDHAIRSMVWSHNDNWMVSGDD-GGAIKYWQNNMNN 219 (715)
Q Consensus 145 ~~I~~l~~spdg~~Latgs-~dg~I~Iwd~~~-~~~--~~~l~~h~~~V~~l~~spdg~~L~tgs~-dg~I~iwd~~~~~ 219 (715)
+....+++++++++|++++ .++.|.+|+++. ++. +.... .......++|++++++|++++. ++.|.+|++++..
T Consensus 35 ~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g 113 (330)
T PRK11028 35 GQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDG 113 (330)
T ss_pred CCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCC
Confidence 4567889999999988765 478899999863 332 22222 2345678999999998887764 7899999987432
Q ss_pred ----eeeeecCCCCCeEEEEEecCCCEEEEEE-CCCcEEEEECCCCeeEEE-----ec-ccCCceEEEEEcCCCCEEEEE
Q 005096 220 ----VKANKSAHKESVRDLSFCRTDLKFCSCS-DDTTVKVWDFARCQEERS-----LT-GHGWDVKSVDWHPTKSLLVSG 288 (715)
Q Consensus 220 ----~~~~~~~h~~~I~~l~~spd~~~Las~s-~Dg~V~iwdl~~~~~~~~-----l~-~~~~~I~si~~spdg~~L~sg 288 (715)
....+ .+.....+++++++++++++++ .++.|.+||+++...+.. .. ........++|++++++|+++
T Consensus 114 ~~~~~~~~~-~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~ 192 (330)
T PRK11028 114 IPVAPIQII-EGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCV 192 (330)
T ss_pred CCCCceeec-cCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEE
Confidence 12222 2234567788999999886655 569999999976332211 11 123456789999999999888
Q ss_pred eC-CCcEEEEECCC--Cc--eeEEeccC------CCceEEEEEcCCCCEEEEEEC-CCeEEEEECCCCe----EEEEeec
Q 005096 289 GK-DSLVKLWDAKS--GR--ELCSFHGH------KNMVLCVKWNQNGNWVLTASK-DQIIKLYDIRAMK----ELESFRG 352 (715)
Q Consensus 289 s~-Dg~I~iwDl~s--~~--~~~~~~~~------~~~I~sl~~spdg~~Lasgs~-dg~I~iwDl~t~~----~~~~~~~ 352 (715)
.. ++.|.+||++. ++ .+..+... ......+.|++++++|+++.. ++.|.+||+.... .+..+..
T Consensus 193 ~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~ 272 (330)
T PRK11028 193 NELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPT 272 (330)
T ss_pred ecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEec
Confidence 76 89999999973 32 23333211 123346889999999999864 6899999986433 2222222
Q ss_pred CCCCeEEEEEccCCCCEEEEEe-CCCcEEEEEcCCC
Q 005096 353 HRKDVTALAWHPFHEEYFVSGS-LDGSIFHWLVGHE 387 (715)
Q Consensus 353 h~~~V~~l~~sp~~~~~l~sgs-~DG~I~iwd~~~~ 387 (715)
......+.+++ ++++|++++ .+++|.+|+++..
T Consensus 273 -~~~p~~~~~~~-dg~~l~va~~~~~~v~v~~~~~~ 306 (330)
T PRK11028 273 -ETQPRGFNIDH-SGKYLIAAGQKSHHISVYEIDGE 306 (330)
T ss_pred -cccCCceEECC-CCCEEEEEEccCCcEEEEEEcCC
Confidence 23556889999 566555544 5899999988643
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.5e-16 Score=151.41 Aligned_cols=231 Identities=17% Similarity=0.232 Sum_probs=178.6
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC----------ceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEEC
Q 005096 188 AIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN----------NVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDF 257 (715)
Q Consensus 188 ~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~----------~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl 257 (715)
.|.+-+|++.+++|++|+.+|.|.+..+++. ..+.....|+..|..++|. +.+|++|+ ||.|+-|..
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W 88 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEW 88 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEeee
Confidence 4556689999999999999999999987531 2344457899999999997 34566665 599999987
Q ss_pred CCCeeEEE------e-------cccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCceEEEEEcCCC
Q 005096 258 ARCQEERS------L-------TGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNG 324 (715)
Q Consensus 258 ~~~~~~~~------l-------~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg 324 (715)
+...+... + ...--.|+++.+.|..+.|++++.|+.++.||+++|+..+++++|.+.|.++.--...
T Consensus 89 ~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~ 168 (325)
T KOG0649|consen 89 NEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNAN 168 (325)
T ss_pred hhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccC
Confidence 54333110 0 0122368899999988888888899999999999999999999999999999985555
Q ss_pred CEEEEEECCCeEEEEECCCCeEEEEeecC----------CCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEe
Q 005096 325 NWVLTASKDQIIKLYDIRAMKELESFRGH----------RKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIH 394 (715)
Q Consensus 325 ~~Lasgs~dg~I~iwDl~t~~~~~~~~~h----------~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~ 394 (715)
..|++|++||++||||+++.+++..+... ...|-+++. +++++++|+. -.+.+|.++..+....+.
T Consensus 169 ~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~---~edWlvCGgG-p~lslwhLrsse~t~vfp 244 (325)
T KOG0649|consen 169 GQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV---NEDWLVCGGG-PKLSLWHLRSSESTCVFP 244 (325)
T ss_pred cceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec---cCceEEecCC-CceeEEeccCCCceEEEe
Confidence 67999999999999999999998877532 234666665 5678777764 478999998877655544
Q ss_pred eccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCC
Q 005096 395 NVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNR 429 (715)
Q Consensus 395 ~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~ 429 (715)
. ...|..+.|. .+.+++++..+.|.-|.++-
T Consensus 245 i--pa~v~~v~F~--~d~vl~~G~g~~v~~~~l~G 275 (325)
T KOG0649|consen 245 I--PARVHLVDFV--DDCVLIGGEGNHVQSYTLNG 275 (325)
T ss_pred c--ccceeEeeee--cceEEEeccccceeeeeecc
Confidence 3 5578888886 44688888888899998753
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.5e-16 Score=179.47 Aligned_cols=291 Identities=15% Similarity=0.201 Sum_probs=207.7
Q ss_pred EEEEecCCCCccEEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCc-------eEEEEeccCCCEEEEEEcCCCCEEEEEeC
Q 005096 135 FVHTSLNKNRCSINRVLWTPTG-RRLITGSQSGEFTLWNGQSFN-------FEMILQAHDHAIRSMVWSHNDNWMVSGDD 206 (715)
Q Consensus 135 ~~~~~l~~H~~~I~~l~~spdg-~~Latgs~dg~I~Iwd~~~~~-------~~~~l~~h~~~V~~l~~spdg~~L~tgs~ 206 (715)
.+...|..|+..|..++.+.+. .++++|+.||+|+|||+.+.. ...++......+.++....+++.+|+++.
T Consensus 1039 ~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~ 1118 (1431)
T KOG1240|consen 1039 ILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTK 1118 (1431)
T ss_pred eEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcC
Confidence 3455788899999999998766 999999999999999976422 22333335678999999999999999999
Q ss_pred CCcEEEEeCCCCce-------eeeecCC--CCCeEEEEEecC-CC-EEEEEECCCcEEEEECCCCeeEEEec--ccCCce
Q 005096 207 GGAIKYWQNNMNNV-------KANKSAH--KESVRDLSFCRT-DL-KFCSCSDDTTVKVWDFARCQEERSLT--GHGWDV 273 (715)
Q Consensus 207 dg~I~iwd~~~~~~-------~~~~~~h--~~~I~~l~~spd-~~-~Las~s~Dg~V~iwdl~~~~~~~~l~--~~~~~I 273 (715)
||.|++.+++..+. ......+ ...|...++... .. .|+.+...+.|..||++.......++ ...+.|
T Consensus 1119 DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~v 1198 (1431)
T KOG1240|consen 1119 DGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLV 1198 (1431)
T ss_pred CCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccce
Confidence 99999998876321 1111122 223333444332 23 67888889999999997765544443 345689
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEec-cCCCceEEEEEcC---CCCEEEEEE--CCCeEEEEECCCCeEE
Q 005096 274 KSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFH-GHKNMVLCVKWNQ---NGNWVLTAS--KDQIIKLYDIRAMKEL 347 (715)
Q Consensus 274 ~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~-~~~~~I~sl~~sp---dg~~Lasgs--~dg~I~iwDl~t~~~~ 347 (715)
++++.++.++++++|+..|.+.+||+|-+..+..+. .+..+|+.+..++ ...++++++ ..+.|.+|++.++.+-
T Consensus 1199 TSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~ 1278 (1431)
T KOG1240|consen 1199 TSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQ 1278 (1431)
T ss_pred eEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcce
Confidence 999999999999999999999999999888888775 3446777777766 234555544 5778999999998766
Q ss_pred EEeecCCC-------------------CeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCce------------------
Q 005096 348 ESFRGHRK-------------------DVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQ------------------ 390 (715)
Q Consensus 348 ~~~~~h~~-------------------~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~------------------ 390 (715)
..+...++ ......+.. .+.++.+|+.|..|+.||.......
T Consensus 1279 ~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~-~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~~~~~~s~ 1357 (1431)
T KOG1240|consen 1279 TVLWASDGAPILSYALPSNDARKPDSLAGISCGVCE-KNGFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSYSTNSESY 1357 (1431)
T ss_pred EEEEcCCCCcchhhhcccccCCCCCcccceeeeccc-CCceeeecCCccceeeccCCCcccccccccCccccccccchhc
Confidence 55543311 111222222 5678899999999999998542211
Q ss_pred -----------------------------EE--------EeeccCCCEEEEEEcCC-CCEEEEEECCCeEEEEe
Q 005096 391 -----------------------------VE--------IHNVHDNTVWDLAWHPI-GYLLCSGSNDHTTKFWC 426 (715)
Q Consensus 391 -----------------------------~~--------~~~~h~~~V~~l~~spd-g~~L~sgs~Dg~I~iWd 426 (715)
.. ....|...|+++++... ..+|++++.||.|+||.
T Consensus 1358 ~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1358 DLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred cccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCccEEEEecCCCeeeecC
Confidence 00 00125667888887665 46899999999999994
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.6e-15 Score=149.93 Aligned_cols=278 Identities=16% Similarity=0.243 Sum_probs=195.6
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEE-EEeCC------CcEEEEeCCCC
Q 005096 146 SINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMV-SGDDG------GAIKYWQNNMN 218 (715)
Q Consensus 146 ~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~-tgs~d------g~I~iwd~~~~ 218 (715)
...+++|+.|...+++|.++| ++||+++-.+.......+.+.+.-+...-..++|+ +|+.+ ..|.|||-...
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~ 85 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKE 85 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccC
Confidence 345599999999999999998 99999987665444444444433333222346664 44433 47999996666
Q ss_pred ceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECC-CCeeEEEeccc--CCceEEEEEcCCCCEEEE-EeCCCcE
Q 005096 219 NVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFA-RCQEERSLTGH--GWDVKSVDWHPTKSLLVS-GGKDSLV 294 (715)
Q Consensus 219 ~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~-~~~~~~~l~~~--~~~I~si~~spdg~~L~s-gs~Dg~I 294 (715)
.++.++ .....|.++.+..+ .|++.- ++.|+||... +.+.++.+... ...+.+++-+.+..+|+. |-.-|.|
T Consensus 86 ~~i~el-~f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~Gqv 161 (346)
T KOG2111|consen 86 RCIIEL-SFNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQV 161 (346)
T ss_pred cEEEEE-EeccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceE
Confidence 666655 45778999999765 455544 5689999986 55555555432 233545544444445554 4456899
Q ss_pred EEEECCCCce--eEEeccCCCceEEEEEcCCCCEEEEEECCCe-EEEEECCCCeEEEEeec--CCCCeEEEEEccCCCCE
Q 005096 295 KLWDAKSGRE--LCSFHGHKNMVLCVKWNQNGNWVLTASKDQI-IKLYDIRAMKELESFRG--HRKDVTALAWHPFHEEY 369 (715)
Q Consensus 295 ~iwDl~s~~~--~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~-I~iwDl~t~~~~~~~~~--h~~~V~~l~~sp~~~~~ 369 (715)
.|-|+...+. ...+..|.+.|.|++++-+|..||+++..|+ |||||..+++.+.+++. ....|.+|+|++ +..+
T Consensus 162 Qi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp-~~s~ 240 (346)
T KOG2111|consen 162 QIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSP-NSSW 240 (346)
T ss_pred EEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCC-CccE
Confidence 9999987655 4678899999999999999999999999996 79999999999999874 346799999999 9999
Q ss_pred EEEEeCCCcEEEEEcCCCCceEE----------E-------------eeccCCCEEEEEEcCCCCEEEEEECCCeEEEEe
Q 005096 370 FVSGSLDGSIFHWLVGHETPQVE----------I-------------HNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWC 426 (715)
Q Consensus 370 l~sgs~DG~I~iwd~~~~~~~~~----------~-------------~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWd 426 (715)
|+++|+.|+|.||.++....... + +....+....++|-.+.+.++..+.||..+-+.
T Consensus 241 LavsSdKgTlHiF~l~~~~~~~~~~SSl~~~~~~lpky~~S~wS~~~f~l~~~~~~~~~fg~~~nsvi~i~~Dgsy~k~~ 320 (346)
T KOG2111|consen 241 LAVSSDKGTLHIFSLRDTENTEDESSSLSFKRLVLPKYFSSEWSFAKFQLPQGTQCIIAFGSETNTVIAICADGSYYKFK 320 (346)
T ss_pred EEEEcCCCeEEEEEeecCCCCccccccccccccccchhcccceeEEEEEccCCCcEEEEecCCCCeEEEEEeCCcEEEEE
Confidence 99999999999998865321111 0 001123445566766656666666777766555
Q ss_pred cCC
Q 005096 427 RNR 429 (715)
Q Consensus 427 l~~ 429 (715)
++.
T Consensus 321 f~~ 323 (346)
T KOG2111|consen 321 FDP 323 (346)
T ss_pred ecc
Confidence 544
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.4e-16 Score=175.44 Aligned_cols=235 Identities=11% Similarity=0.112 Sum_probs=166.3
Q ss_pred CCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCC---CcEEEEeCCCCceeeeecCCCCCeEEEEEecCCC
Q 005096 165 SGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDG---GAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDL 241 (715)
Q Consensus 165 dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~d---g~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~ 241 (715)
+..|+|||.+..+ ...+..+...+.+.+|++|++.|+.++.+ ..|++||+.+++.... .........++|++|++
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l-~~~~g~~~~~~wSPDG~ 260 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVV-ASFRGHNGAPAFSPDGS 260 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEE-ecCCCccCceeECCCCC
Confidence 4689999987655 55677788889999999999999877643 3699999988754322 22233345789999999
Q ss_pred EEEEEE-CCCcEEEE--ECCCCeeEEEecccCCceEEEEEcCCCCEEEEEe-CCCcEEEEECCCC-ceeEEeccCCCceE
Q 005096 242 KFCSCS-DDTTVKVW--DFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGG-KDSLVKLWDAKSG-RELCSFHGHKNMVL 316 (715)
Q Consensus 242 ~Las~s-~Dg~V~iw--dl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs-~Dg~I~iwDl~s~-~~~~~~~~~~~~I~ 316 (715)
.|+.++ .+|.+.|| |+.+++ ...+..+...+.+.+|++|++.|+.++ .++...||+++.. .....+ .+.. .
T Consensus 261 ~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~ 336 (429)
T PRK01742 261 RLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG--Y 336 (429)
T ss_pred EEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--C
Confidence 888765 57765555 665554 455556666788999999999777655 5778888876532 222333 2333 4
Q ss_pred EEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcC-CCCceEEEee
Q 005096 317 CVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVG-HETPQVEIHN 395 (715)
Q Consensus 317 sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~-~~~~~~~~~~ 395 (715)
+++|++||++|++.+.++ |.+||+.+++........ ...++.|+| ++++|++++.++.+.+|++. ........+.
T Consensus 337 ~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sP-dG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~ 412 (429)
T PRK01742 337 SAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTF--LDESPSISP-NGIMIIYSSTQGLGKVLQLVSADGRFKARLP 412 (429)
T ss_pred CccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCC--CCCCceECC-CCCEEEEEEcCCCceEEEEEECCCCceEEcc
Confidence 678999999999887765 566999988754333222 345788999 88899988889988888763 2233334445
Q ss_pred ccCCCEEEEEEcCC
Q 005096 396 VHDNTVWDLAWHPI 409 (715)
Q Consensus 396 ~h~~~V~~l~~spd 409 (715)
.|.+.+...+|++-
T Consensus 413 ~~~g~~~~p~wsp~ 426 (429)
T PRK01742 413 GSDGQVKFPAWSPY 426 (429)
T ss_pred CCCCCCCCcccCCC
Confidence 67788899999874
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.4e-16 Score=156.73 Aligned_cols=238 Identities=16% Similarity=0.338 Sum_probs=181.8
Q ss_pred EEEecCCCCccEEEEEEcCCCC-----EEEEEeCCCeEEEEeCCCCc--e--EEEE-----eccCCCEEEEEEcC-CCCE
Q 005096 136 VHTSLNKNRCSINRVLWTPTGR-----RLITGSQSGEFTLWNGQSFN--F--EMIL-----QAHDHAIRSMVWSH-NDNW 200 (715)
Q Consensus 136 ~~~~l~~H~~~I~~l~~spdg~-----~Latgs~dg~I~Iwd~~~~~--~--~~~l-----~~h~~~V~~l~~sp-dg~~ 200 (715)
+...-..|.-+++.+.|.|+.. +|||++ | .++||.+...+ . ...+ ..+...+++..|+. |-++
T Consensus 88 ~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~-D-~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~ 165 (364)
T KOG0290|consen 88 VEDANFDHPYPVTKLMWIPDSKGVYPDLLATSS-D-FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNL 165 (364)
T ss_pred eccCCCCCCCCccceEecCCccccCcchhhccc-C-eEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcce
Confidence 3334457889999999999863 444443 3 59999877422 1 1111 23456789999986 4578
Q ss_pred EEEEeCCCcEEEEeCCCC---ceeeeecCCCCCeEEEEEecCC-CEEEEEECCCcEEEEECCCCeeEEEeccc---CCce
Q 005096 201 MVSGDDGGAIKYWQNNMN---NVKANKSAHKESVRDLSFCRTD-LKFCSCSDDTTVKVWDFARCQEERSLTGH---GWDV 273 (715)
Q Consensus 201 L~tgs~dg~I~iwd~~~~---~~~~~~~~h~~~I~~l~~spd~-~~Las~s~Dg~V~iwdl~~~~~~~~l~~~---~~~I 273 (715)
|.+++-|-+..|||++++ .++..+..|...|.+|+|..++ ..||+++.||.||+||++..+....+... ....
T Consensus 166 igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pL 245 (364)
T KOG0290|consen 166 IGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPL 245 (364)
T ss_pred eEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcc
Confidence 899999999999999986 3577888999999999999865 56899999999999999876654444322 3467
Q ss_pred EEEEEcCCC-CEEEEEeCC-CcEEEEECCC-CceeEEeccCCCceEEEEEcC-CCCEEEEEECCCeEEEEECCCCeE---
Q 005096 274 KSVDWHPTK-SLLVSGGKD-SLVKLWDAKS-GRELCSFHGHKNMVLCVKWNQ-NGNWVLTASKDQIIKLYDIRAMKE--- 346 (715)
Q Consensus 274 ~si~~spdg-~~L~sgs~D-g~I~iwDl~s-~~~~~~~~~~~~~I~sl~~sp-dg~~Lasgs~dg~I~iwDl~t~~~--- 346 (715)
..++|+... +++++-..| ..|.|.|+|. ...+.+++.|.+.|+.|+|.| ....|++++.|..+.|||+...-.
T Consensus 246 lRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~ 325 (364)
T KOG0290|consen 246 LRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENG 325 (364)
T ss_pred eeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCC
Confidence 789998754 577765544 5799999996 467888999999999999999 557899999999999999975322
Q ss_pred ---EEEeecCCCCeEEEEEccCCCCEEEEEeCC
Q 005096 347 ---LESFRGHRKDVTALAWHPFHEEYFVSGSLD 376 (715)
Q Consensus 347 ---~~~~~~h~~~V~~l~~sp~~~~~l~sgs~D 376 (715)
+..+. ....|+.|.|++...++|+.+..+
T Consensus 326 ~dPilay~-a~~EVNqi~Ws~~~~Dwiai~~~k 357 (364)
T KOG0290|consen 326 EDPILAYT-AGGEVNQIQWSSSQPDWIAICFGK 357 (364)
T ss_pred CCchhhhh-ccceeeeeeecccCCCEEEEEecC
Confidence 22233 667899999998888898887754
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.2e-16 Score=175.83 Aligned_cols=218 Identities=14% Similarity=0.148 Sum_probs=160.2
Q ss_pred ecCCCCccEEEEEEcCCCCEEEEEeCC---CeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEe-CCCcEEEE-
Q 005096 139 SLNKNRCSINRVLWTPTGRRLITGSQS---GEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGD-DGGAIKYW- 213 (715)
Q Consensus 139 ~l~~H~~~I~~l~~spdg~~Latgs~d---g~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs-~dg~I~iw- 213 (715)
.+..|...|.+.+|||||++|++++.+ ..|++||+.+++.... ....+...+++|++|++.|+++. .+|.+.||
T Consensus 198 ~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l-~~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~ 276 (429)
T PRK01742 198 IVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVV-ASFRGHNGAPAFSPDGSRLAFASSKDGVLNIYV 276 (429)
T ss_pred EeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEE-ecCCCccCceeECCCCCEEEEEEecCCcEEEEE
Confidence 355678889999999999999987654 3699999988754332 22233345789999999887764 67876655
Q ss_pred -eCCCCceeeeecCCCCCeEEEEEecCCCEEEEEE-CCCcEEEEECCCC-eeEEEecccCCceEEEEEcCCCCEEEEEeC
Q 005096 214 -QNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCS-DDTTVKVWDFARC-QEERSLTGHGWDVKSVDWHPTKSLLVSGGK 290 (715)
Q Consensus 214 -d~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s-~Dg~V~iwdl~~~-~~~~~l~~~~~~I~si~~spdg~~L~sgs~ 290 (715)
|+.++.. ..+..+...+.+.+|++|++.|+.++ .++.+.||+++.. .....+ .+.. .+++|++|+++|++++.
T Consensus 277 ~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG~~ia~~~~ 352 (429)
T PRK01742 277 MGANGGTP-SQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG--YSAQISADGKTLVMING 352 (429)
T ss_pred EECCCCCe-EeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--CCccCCCCCCEEEEEcC
Confidence 5655554 34455666788999999999877665 5788888876432 222223 3332 46789999999988877
Q ss_pred CCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEEC--CCCeEEEEeecCCCCeEEEEEcc
Q 005096 291 DSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDI--RAMKELESFRGHRKDVTALAWHP 364 (715)
Q Consensus 291 Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl--~t~~~~~~~~~h~~~V~~l~~sp 364 (715)
++ |.+||+.+++....... ....++.|+||+++|++++.++.+.+|++ .+++.+..+..+...+..++|+|
T Consensus 353 ~~-i~~~Dl~~g~~~~lt~~--~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~wsp 425 (429)
T PRK01742 353 DN-VVKQDLTSGSTEVLSST--FLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFPAWSP 425 (429)
T ss_pred CC-EEEEECCCCCeEEecCC--CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCCCCCCCCcccCC
Confidence 65 66699998875533322 23467889999999999999998888875 35888888888888899999998
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.74 E-value=8.9e-18 Score=174.30 Aligned_cols=273 Identities=16% Similarity=0.272 Sum_probs=222.0
Q ss_pred CccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeee
Q 005096 144 RCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKAN 223 (715)
Q Consensus 144 ~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~ 223 (715)
...-..+.++.+|++|+.|+..|.|-.+|..++++...+.. ...|.++.|..+..+||++- ...++|||-...+ +..
T Consensus 129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v-~Etv~Dv~~LHneq~~AVAQ-K~y~yvYD~~GtE-lHC 205 (545)
T KOG1272|consen 129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV-METVRDVTFLHNEQFFAVAQ-KKYVYVYDNNGTE-LHC 205 (545)
T ss_pred ccCCeeeeecCCccEEEecCCccceeeeecccceeeeeeeh-hhhhhhhhhhcchHHHHhhh-hceEEEecCCCcE-Eee
Confidence 34567899999999999999999999999999999888765 56789999999988888764 5789999866444 333
Q ss_pred ecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 005096 224 KSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGR 303 (715)
Q Consensus 224 ~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~ 303 (715)
++. ...|..+.|.|..-+|++++..|.++.-|+.+++.+..+....+.+..++-+|-+..+-+|..+|+|.+|.-.+.+
T Consensus 206 lk~-~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~ske 284 (545)
T KOG1272|consen 206 LKR-HIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKE 284 (545)
T ss_pred hhh-cCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcc
Confidence 333 3568889999999999999999999999999999999999888999999999999999999999999999999999
Q ss_pred eeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEE
Q 005096 304 ELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWL 383 (715)
Q Consensus 304 ~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd 383 (715)
.+..+..|.+.|.+|++.++|+|++|.+.|..|+|||+++...+.++.. ......+++| ...+||.+ ....|.||.
T Consensus 285 PLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~S--qkglLA~~-~G~~v~iw~ 360 (545)
T KOG1272|consen 285 PLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLS--QKGLLALS-YGDHVQIWK 360 (545)
T ss_pred hHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec-CCCccccccc--cccceeee-cCCeeeeeh
Confidence 9999889999999999999999999999999999999999998887775 5567777776 34455544 445899994
Q ss_pred cCCC----CceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEE
Q 005096 384 VGHE----TPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKF 424 (715)
Q Consensus 384 ~~~~----~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~i 424 (715)
-... .....+.....+.|.++.|.|-..+|-+|...|.-.|
T Consensus 361 d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~tsi 405 (545)
T KOG1272|consen 361 DALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGITSI 405 (545)
T ss_pred hhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCCceeE
Confidence 3211 1111122223458999999998777777766665444
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=2e-16 Score=167.99 Aligned_cols=294 Identities=14% Similarity=0.232 Sum_probs=216.9
Q ss_pred CCCccEEEEEEcCCCCEEE-EEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCce
Q 005096 142 KNRCSINRVLWTPTGRRLI-TGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNV 220 (715)
Q Consensus 142 ~H~~~I~~l~~spdg~~La-tgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~ 220 (715)
.|...-+.|..++||+||+ +|...-.|++||+.+..+...-......|.-..++.|-..++.-..|.+|.+..-.....
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy 128 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHY 128 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeee
Confidence 4666778899999999865 777888999999987655444333344455555565555556666677776643221111
Q ss_pred eeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 005096 221 KANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAK 300 (715)
Q Consensus 221 ~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~ 300 (715)
... ....-.+++++.-..-|++++....|+-++++.+..+..+......+++|..++...+|++|+.||.|..||.+
T Consensus 129 ~~R---IP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR 205 (703)
T KOG2321|consen 129 RTR---IPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPR 205 (703)
T ss_pred eee---cCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecch
Confidence 111 12233456666544556666667789999999999999998888999999999999999999999999999999
Q ss_pred CCceeEEecc------CC-----CceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEee-cCCCCeEEEEEccCCCC
Q 005096 301 SGRELCSFHG------HK-----NMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFR-GHRKDVTALAWHPFHEE 368 (715)
Q Consensus 301 s~~~~~~~~~------~~-----~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~-~h~~~V~~l~~sp~~~~ 368 (715)
+...+.++.. +. ..|++++|+.||-.+++|+.+|.|.|||+++.+.+..-. ...-.|..+.|.+.+..
T Consensus 206 ~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q 285 (703)
T KOG2321|consen 206 DKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQ 285 (703)
T ss_pred hhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCC
Confidence 8776665542 22 249999999999999999999999999999888765543 34567889999774433
Q ss_pred EEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCCCCCcccccccc
Q 005096 369 YFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGDTARDKFNM 440 (715)
Q Consensus 369 ~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~~~~~~~~~~ 440 (715)
-.+...+...++|||-.+++....+.. ...++.+|+-+++.+++++-.+..+..|=+...+...+.+.-+
T Consensus 286 ~~v~S~Dk~~~kiWd~~~Gk~~asiEp--t~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~LGPaPrWCSfL 355 (703)
T KOG2321|consen 286 NKVVSMDKRILKIWDECTGKPMASIEP--TSDLNDFCFVPGSGMFFTANESSKMHTYYIPSLGPAPRWCSFL 355 (703)
T ss_pred ceEEecchHHhhhcccccCCceeeccc--cCCcCceeeecCCceEEEecCCCcceeEEccccCCCchhhhHH
Confidence 333334456899999998887766654 3459999999999999999999999988887777655554433
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.5e-16 Score=158.37 Aligned_cols=230 Identities=15% Similarity=0.251 Sum_probs=173.0
Q ss_pred CEEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecC--CCEEEEEECCCcEEEEECCCCeeEEEec--ccC-Cce
Q 005096 199 NWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRT--DLKFCSCSDDTTVKVWDFARCQEERSLT--GHG-WDV 273 (715)
Q Consensus 199 ~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd--~~~Las~s~Dg~V~iwdl~~~~~~~~l~--~~~-~~I 273 (715)
+.+|++..+|.|++||..++..+..++++...++.+.|..+ ...+.+|+.||+|++||++.......+. .+. ...
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 57888899999999999999999999999999999999873 4679999999999999998776655443 333 356
Q ss_pred EEEEEcCCCCEEEEEeC----CCcEEEEECCCCce-eEEe-ccCCCceEEEEEcC-CCCEEEEEECCCeEEEEECCCCeE
Q 005096 274 KSVDWHPTKSLLVSGGK----DSLVKLWDAKSGRE-LCSF-HGHKNMVLCVKWNQ-NGNWVLTASKDQIIKLYDIRAMKE 346 (715)
Q Consensus 274 ~si~~spdg~~L~sgs~----Dg~I~iwDl~s~~~-~~~~-~~~~~~I~sl~~sp-dg~~Lasgs~dg~I~iwDl~t~~~ 346 (715)
.+++.+-.++++++|+. |-.|.+||+|..+. +..+ ..|...|++|.|+| +-++|++|+.||.|.|||++....
T Consensus 121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~E 200 (376)
T KOG1188|consen 121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNE 200 (376)
T ss_pred eEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcc
Confidence 67777767788888753 66799999998766 5444 57999999999999 668999999999999999976533
Q ss_pred ---EEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeecc-----------CCCEEEEEEcCCCCE
Q 005096 347 ---LESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVH-----------DNTVWDLAWHPIGYL 412 (715)
Q Consensus 347 ---~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h-----------~~~V~~l~~spdg~~ 412 (715)
+.....+...|.++.|.....+.|.+-+...+..+|+++.+.....+.... ...+...-...+...
T Consensus 201 eDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~ 280 (376)
T KOG1188|consen 201 EDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDT 280 (376)
T ss_pred hhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcce
Confidence 333345778899999997555678888999999999998876544433210 111222222334455
Q ss_pred EEEEEC-CCeEEEEecC
Q 005096 413 LCSGSN-DHTTKFWCRN 428 (715)
Q Consensus 413 L~sgs~-Dg~I~iWdl~ 428 (715)
+++++. -+...++-++
T Consensus 281 ~~l~g~~~n~~~~~~~~ 297 (376)
T KOG1188|consen 281 CALAGTDSNKGTIFPLV 297 (376)
T ss_pred EEEeccccCceeEEEee
Confidence 555554 6677777665
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=7.6e-16 Score=162.10 Aligned_cols=209 Identities=22% Similarity=0.358 Sum_probs=173.0
Q ss_pred CCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEE
Q 005096 156 GRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLS 235 (715)
Q Consensus 156 g~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~ 235 (715)
...|+.+++||.+.|.+ +.++..+.+..|.+.|.|-.|++||.-|+++++||.|++|.. ++-+..++......|.|++
T Consensus 75 ~d~~~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSr-sGMLRStl~Q~~~~v~c~~ 152 (737)
T KOG1524|consen 75 SDTLLICSNDGRFVILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSR-SGMLRSTVVQNEESIRCAR 152 (737)
T ss_pred cceEEEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEec-cchHHHHHhhcCceeEEEE
Confidence 35688899999999987 557788889999999999999999999999999999999974 4555555556778999999
Q ss_pred EecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCce
Q 005096 236 FCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMV 315 (715)
Q Consensus 236 ~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I 315 (715)
|.++.+.++.|.. +.+.|=-+.....+...+.|.+-|.+++|++..+++++|++|-..+|||.. |..+..-..|...|
T Consensus 153 W~p~S~~vl~c~g-~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~I 230 (737)
T KOG1524|consen 153 WAPNSNSIVFCQG-GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEYAI 230 (737)
T ss_pred ECCCCCceEEecC-CeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc-CcccccCChhccce
Confidence 9999887776654 467777777777788889999999999999999999999999999999976 67777777899999
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEE
Q 005096 316 LCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHW 382 (715)
Q Consensus 316 ~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iw 382 (715)
++++|+|+ +.+++++. .++++= +...+.|..++|++ ++..+++|+..|.|.+-
T Consensus 231 TSva~npd-~~~~v~S~-nt~R~~-----------~p~~GSifnlsWS~-DGTQ~a~gt~~G~v~~A 283 (737)
T KOG1524|consen 231 TSVAFNPE-KDYLLWSY-NTARFS-----------SPRVGSIFNLSWSA-DGTQATCGTSTGQLIVA 283 (737)
T ss_pred eeeeeccc-cceeeeee-eeeeec-----------CCCccceEEEEEcC-CCceeeccccCceEEEe
Confidence 99999999 55666653 344421 23456799999999 89999999999887653
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.6e-16 Score=164.11 Aligned_cols=195 Identities=18% Similarity=0.256 Sum_probs=159.7
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeec--
Q 005096 148 NRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKS-- 225 (715)
Q Consensus 148 ~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~-- 225 (715)
.+++|+.+|..|++++.||++|||+..+...+.....|...|.++.|++|+++|++-+.| ..+||+++++..+..+.
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~ 226 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF 226 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence 789999999999999999999999999888888888999999999999999999999999 99999999986655543
Q ss_pred CCCCCeEEEEEecCC---CE--EEEEECCCcEEEEECCCCee-----EEEecccCCceEEEEEcCCCCEEEEEeCCCcEE
Q 005096 226 AHKESVRDLSFCRTD---LK--FCSCSDDTTVKVWDFARCQE-----ERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVK 295 (715)
Q Consensus 226 ~h~~~I~~l~~spd~---~~--Las~s~Dg~V~iwdl~~~~~-----~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~ 295 (715)
..+..+..+.|+.|+ .+ ++.....+.|+.||+...+. .++.......|++++++.||++++.|+.||.|.
T Consensus 227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVa 306 (398)
T KOG0771|consen 227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVA 306 (398)
T ss_pred ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEE
Confidence 334556778888777 33 33334456777777643322 122223445799999999999999999999999
Q ss_pred EEECCCCceeEEe-ccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCC
Q 005096 296 LWDAKSGRELCSF-HGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRA 343 (715)
Q Consensus 296 iwDl~s~~~~~~~-~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t 343 (715)
|++..+-+.+..+ +.|...|+.|.|+||.+++++.+.|..+.|..+.-
T Consensus 307 i~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 307 IYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred EEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 9999987777655 46888999999999999999999998888877653
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.3e-16 Score=163.75 Aligned_cols=218 Identities=13% Similarity=0.196 Sum_probs=158.4
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce----EEEEeccCCCEEEEEE-----cCCCCEEEEEeCCCcEEEEeCC
Q 005096 146 SINRVLWTPTGRRLITGSQSGEFTLWNGQSFNF----EMILQAHDHAIRSMVW-----SHNDNWMVSGDDGGAIKYWQNN 216 (715)
Q Consensus 146 ~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~----~~~l~~h~~~V~~l~~-----spdg~~L~tgs~dg~I~iwd~~ 216 (715)
.++...++-.|++|+..-.+ .+++|+...+.. +.........-.|-+| .+++--|++|-..|.|.++|..
T Consensus 125 ~~~~~~~~~~gd~lcFnvg~-~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~ 203 (636)
T KOG2394|consen 125 IVTNTNQSGKGDRLCFNVGR-ELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPI 203 (636)
T ss_pred ceeeccccCCCCEEEEecCC-eEEEEEccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEecch
Confidence 45555666677777765443 588888763211 1111111122223333 2345567778888999998865
Q ss_pred CCceeeee----cCCCCCeEEEEEecCC-CEEEEEECCCcEEEEECCC--------------Cee--------------E
Q 005096 217 MNNVKANK----SAHKESVRDLSFCRTD-LKFCSCSDDTTVKVWDFAR--------------CQE--------------E 263 (715)
Q Consensus 217 ~~~~~~~~----~~h~~~I~~l~~spd~-~~Las~s~Dg~V~iwdl~~--------------~~~--------------~ 263 (715)
..+..+.+ ...+..|+||.|-+.+ ..++++-.+|.+++||.+. +.. +
T Consensus 204 ~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv 283 (636)
T KOG2394|consen 204 NFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPV 283 (636)
T ss_pred hhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCcc
Confidence 53322211 2345789999999854 5567777899999997621 111 1
Q ss_pred EEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCC
Q 005096 264 RSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRA 343 (715)
Q Consensus 264 ~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t 343 (715)
..+....+.|..++|++||++||+.+.||.+||||..+.+.+..++..-+...|++|||||+||++|++|..|.||.+..
T Consensus 284 ~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~e 363 (636)
T KOG2394|consen 284 ARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEE 363 (636)
T ss_pred ceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEecc
Confidence 11112345788999999999999999999999999999888888887788899999999999999999999999999999
Q ss_pred CeEEEEeecCCCCeEEEEEcc
Q 005096 344 MKELESFRGHRKDVTALAWHP 364 (715)
Q Consensus 344 ~~~~~~~~~h~~~V~~l~~sp 364 (715)
.+.+..-.+|++.|+.|+|.|
T Consensus 364 rRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 364 RRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred ceEEEeccccccceeeEeecc
Confidence 999999999999999999986
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.4e-15 Score=169.32 Aligned_cols=243 Identities=17% Similarity=0.266 Sum_probs=184.2
Q ss_pred CCccEEEEEEcCC-CCEEEEEeCCCeEEEEeCCCCce--EE----EEeccCCCEEEEEEcCCC--CEEEEEeCCCcEEEE
Q 005096 143 NRCSINRVLWTPT-GRRLITGSQSGEFTLWNGQSFNF--EM----ILQAHDHAIRSMVWSHND--NWMVSGDDGGAIKYW 213 (715)
Q Consensus 143 H~~~I~~l~~spd-g~~Latgs~dg~I~Iwd~~~~~~--~~----~l~~h~~~V~~l~~spdg--~~L~tgs~dg~I~iw 213 (715)
-...|+|++|++. ..+||.|+.+|.|.+||+..+.. .. ....|...|+.+.|..+. .-|++++.||.|+.|
T Consensus 241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W 320 (555)
T KOG1587|consen 241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSW 320 (555)
T ss_pred cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeee
Confidence 3567999999995 56788889999999999887655 22 234588899999997754 448999999999999
Q ss_pred eCCCCceee------eec------CCCCCeEEEEEecC-CCEEEEEECCCcEEEEEC---CCCe-----eEEEecccCCc
Q 005096 214 QNNMNNVKA------NKS------AHKESVRDLSFCRT-DLKFCSCSDDTTVKVWDF---ARCQ-----EERSLTGHGWD 272 (715)
Q Consensus 214 d~~~~~~~~------~~~------~h~~~I~~l~~spd-~~~Las~s~Dg~V~iwdl---~~~~-----~~~~l~~~~~~ 272 (715)
+++.-.... ... .....+++++|.+. -..|++|+++|.|..-+- .... ....+..|.+.
T Consensus 321 ~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~ 400 (555)
T KOG1587|consen 321 DTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGP 400 (555)
T ss_pred eccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcc
Confidence 876532210 111 22346788899874 467899999999887332 2221 12345568899
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECC-CCceeEEeccCCCceEEEEEcCCC-CEEEEEECCCeEEEEECCCC--eEEE
Q 005096 273 VKSVDWHPTKSLLVSGGKDSLVKLWDAK-SGRELCSFHGHKNMVLCVKWNQNG-NWVLTASKDQIIKLYDIRAM--KELE 348 (715)
Q Consensus 273 I~si~~spdg~~L~sgs~Dg~I~iwDl~-s~~~~~~~~~~~~~I~sl~~spdg-~~Lasgs~dg~I~iwDl~t~--~~~~ 348 (715)
|.++.++|-+..++..+.|-+|+||... ....+..+..+...|++++||+.. ..|+++..||.|.|||+... +.+.
T Consensus 401 v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~ 480 (555)
T KOG1587|consen 401 VYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVL 480 (555)
T ss_pred eEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcc
Confidence 9999999987755555559999999988 667777788788889999999954 57778888999999999653 3455
Q ss_pred EeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCC
Q 005096 349 SFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGH 386 (715)
Q Consensus 349 ~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~ 386 (715)
+.+.+....+.+.|++ .+.+|++|+..|+|++|++..
T Consensus 481 s~~~~~~~l~~~~~s~-~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 481 SQKVCSPALTRVRWSP-NGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred cccccccccceeecCC-CCcEEEEecCCCcEEEEEcCc
Confidence 5555566677788887 899999999999999999954
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.3e-15 Score=154.76 Aligned_cols=251 Identities=18% Similarity=0.200 Sum_probs=187.4
Q ss_pred EEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC------ceeeee-cCCCCCeEEEEEecCCCEEEEEECCCc
Q 005096 179 EMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN------NVKANK-SAHKESVRDLSFCRTDLKFCSCSDDTT 251 (715)
Q Consensus 179 ~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~------~~~~~~-~~h~~~I~~l~~spd~~~Las~s~Dg~ 251 (715)
.+.+.+|.+.|++|.|+.++++|++|+.|..++||+++.. +.+... ..|...|.|++|...+.+|++|..+++
T Consensus 49 qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~ 128 (609)
T KOG4227|consen 49 QKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGT 128 (609)
T ss_pred hhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcce
Confidence 3446689999999999999999999999999999997642 222222 346689999999999999999999999
Q ss_pred EEEEECCCCeeEEEecc--cCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCc---eeEEeccCCCceEEEEEcCC-CC
Q 005096 252 VKVWDFARCQEERSLTG--HGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGR---ELCSFHGHKNMVLCVKWNQN-GN 325 (715)
Q Consensus 252 V~iwdl~~~~~~~~l~~--~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~---~~~~~~~~~~~I~sl~~spd-g~ 325 (715)
|.+.|+++.+.+..+.. ..+.|..+..+|..+.|++.+.++.|.+||++... .+...........++.|+|. -.
T Consensus 129 VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~ 208 (609)
T KOG4227|consen 129 VIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPA 208 (609)
T ss_pred eEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCce
Confidence 99999999888877753 23489999999999999999999999999998654 22333345566888999994 57
Q ss_pred EEEEEECCCeEEEEECCCCeE-EEE------eecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeecc-
Q 005096 326 WVLTASKDQIIKLYDIRAMKE-LES------FRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVH- 397 (715)
Q Consensus 326 ~Lasgs~dg~I~iwDl~t~~~-~~~------~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h- 397 (715)
+|++.+..+-+.|||++.-.. +.. +......-.++.|++ +++.|++.-....-.+||+-+..+.+... .|
T Consensus 209 Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~-~G~Q~msiRR~~~P~~~D~~S~R~~V~k~-D~N 286 (609)
T KOG4227|consen 209 LILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSP-SGNQFMSIRRGKCPLYFDFISQRCFVLKS-DHN 286 (609)
T ss_pred eEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCC-CCCeehhhhccCCCEEeeeecccceeEec-cCC
Confidence 888899999999999986432 111 111122335788999 66666665555556677876644332222 22
Q ss_pred ------CCCEEEEEEcCCCCEEEEEECCCeEEEEecCCCCC
Q 005096 398 ------DNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGD 432 (715)
Q Consensus 398 ------~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~~ 432 (715)
...+.+++|..|. .+++|+.+-.|++|.+....+
T Consensus 287 ~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~d 326 (609)
T KOG4227|consen 287 PNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRAND 326 (609)
T ss_pred CCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCcc
Confidence 2246778887554 499999999999999865443
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.5e-17 Score=180.79 Aligned_cols=244 Identities=19% Similarity=0.321 Sum_probs=195.8
Q ss_pred ceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEE
Q 005096 177 NFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWD 256 (715)
Q Consensus 177 ~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwd 256 (715)
+.++.+.+|...|+|+.|...|.+|++|++|..|+||..++..+.....+|...|+.++.+.++.++++++.|..|++|.
T Consensus 181 k~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWr 260 (1113)
T KOG0644|consen 181 KNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWR 260 (1113)
T ss_pred HHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEe
Confidence 34556778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeE-----EeccCCCceEEEEEcCCCCEEEEEE
Q 005096 257 FARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELC-----SFHGHKNMVLCVKWNQNGNWVLTAS 331 (715)
Q Consensus 257 l~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~-----~~~~~~~~I~sl~~spdg~~Lasgs 331 (715)
+.++..+..+.+|.+.|++|+|+|-. +.+.||++++||.+-.-.+. .+. .+..+.++.|..++..+++++
T Consensus 261 l~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~-~~~~~~s~~~~~~~~~f~Tgs 335 (1113)
T KOG0644|consen 261 LPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFT-EKDLVDSILFENNGDRFLTGS 335 (1113)
T ss_pred cCCCchHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcc-cccceeeeecccccccccccc
Confidence 99999999999999999999999854 77899999999988211111 111 235577888888889999999
Q ss_pred CCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCC-
Q 005096 332 KDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIG- 410 (715)
Q Consensus 332 ~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg- 410 (715)
.|+.-..|.+.... .+...+.-+..+.+...+.+++-.+-.+++|++.++... ....+|...+..|.+++-+
T Consensus 336 ~d~ea~n~e~~~l~------~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~-H~l~ghsd~~yvLd~Hpfn~ 408 (1113)
T KOG0644|consen 336 RDGEARNHEFEQLA------WRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLL-HNLMGHSDEVYVLDVHPFNP 408 (1113)
T ss_pred CCcccccchhhHhh------hhccceEEEeccccccccceeeeeeeEeeeeecccchhh-hhhcccccceeeeeecCCCc
Confidence 99999888765321 112222222222223456677777888999999776544 4455789999999999965
Q ss_pred CEEEEEECCCeEEEEecCCCCC
Q 005096 411 YLLCSGSNDHTTKFWCRNRPGD 432 (715)
Q Consensus 411 ~~L~sgs~Dg~I~iWdl~~~~~ 432 (715)
++..+++.||.+.|||+.+...
T Consensus 409 ri~msag~dgst~iwdi~eg~p 430 (1113)
T KOG0644|consen 409 RIAMSAGYDGSTIIWDIWEGIP 430 (1113)
T ss_pred HhhhhccCCCceEeeecccCCc
Confidence 5567889999999999965443
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.5e-15 Score=148.20 Aligned_cols=245 Identities=11% Similarity=0.193 Sum_probs=189.9
Q ss_pred ccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc---eeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEEC-CC
Q 005096 184 AHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNN---VKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDF-AR 259 (715)
Q Consensus 184 ~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~---~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl-~~ 259 (715)
.....|+|.+|+.|...++++..+..|.||...... ...++..|...|++|+|++..+.|++|+.|..-+||.. ..
T Consensus 8 ~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~ 87 (361)
T KOG1523|consen 8 RLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSG 87 (361)
T ss_pred eccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCC
Confidence 345789999999999999999999999999876654 66778899999999999999999999999999999998 33
Q ss_pred --CeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCcee----EEeccCCCceEEEEEcCCCCEEEEEECC
Q 005096 260 --CQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGREL----CSFHGHKNMVLCVKWNQNGNWVLTASKD 333 (715)
Q Consensus 260 --~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~----~~~~~~~~~I~sl~~spdg~~Lasgs~d 333 (715)
.+....+..++..+++|.|+|.++.|++|+....|.||-++..+.- ..-+.+.+.|++++|++++-+|++|+.|
T Consensus 88 ~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D 167 (361)
T KOG1523|consen 88 GTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTD 167 (361)
T ss_pred CeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccC
Confidence 3445566678899999999999999999999999999988754322 1223456789999999999999999999
Q ss_pred CeEEEEECC-----C-------------CeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEee
Q 005096 334 QIIKLYDIR-----A-------------MKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHN 395 (715)
Q Consensus 334 g~I~iwDl~-----t-------------~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~ 395 (715)
+..+||..- . |..+.++....+.|..+.|++ .++.|+-.+.|..|.+-|............
T Consensus 168 ~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~-sG~~lawv~Hds~v~~~da~~p~~~v~~~~ 246 (361)
T KOG1523|consen 168 GKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSP-SGNRLAWVGHDSTVSFVDAAGPSERVQSVA 246 (361)
T ss_pred cceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCC-CCCEeeEecCCCceEEeecCCCchhccchh
Confidence 999998642 1 223444545677899999999 899999999999999999876653333322
Q ss_pred ccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCCC
Q 005096 396 VHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRP 430 (715)
Q Consensus 396 ~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~ 430 (715)
...-+..++.|-.+.. ++.++.|..=.++..+++
T Consensus 247 ~~~lP~ls~~~ise~~-vv~ag~~c~P~lf~~~~~ 280 (361)
T KOG1523|consen 247 TAQLPLLSVSWISENS-VVAAGYDCGPVLFVTDEE 280 (361)
T ss_pred hccCCceeeEeecCCc-eeecCCCCCceEEEeccc
Confidence 2235777777775543 445555544444444433
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.6e-14 Score=153.76 Aligned_cols=285 Identities=11% Similarity=0.123 Sum_probs=186.4
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCceeeeec
Q 005096 147 INRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGD-DGGAIKYWQNNMNNVKANKS 225 (715)
Q Consensus 147 I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs-~dg~I~iwd~~~~~~~~~~~ 225 (715)
-..+.|++||+++++++.||.|.++|+.+.+.++++.... ...++++++||+++++++ .++.|.|+|.++.+.+..+.
T Consensus 39 h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~-~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~ 117 (369)
T PF02239_consen 39 HAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG-NPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIP 117 (369)
T ss_dssp EEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS-EEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE
T ss_pred eeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC-CcceEEEcCCCCEEEEEecCCCceeEeccccccceeecc
Confidence 4557899999999999999999999999999999987644 467899999999998665 67999999999988877764
Q ss_pred C-------CCCCeEEEEEecCCCEEEEEEC-CCcEEEEECCCCeeEE-EecccCCceEEEEEcCCCCEEEEE-eCCCcEE
Q 005096 226 A-------HKESVRDLSFCRTDLKFCSCSD-DTTVKVWDFARCQEER-SLTGHGWDVKSVDWHPTKSLLVSG-GKDSLVK 295 (715)
Q Consensus 226 ~-------h~~~I~~l~~spd~~~Las~s~-Dg~V~iwdl~~~~~~~-~l~~~~~~I~si~~spdg~~L~sg-s~Dg~I~ 295 (715)
. ....+..|..++....++..-. .+.|.+.|..+.+.+. .............|++++++++++ ..++.|.
T Consensus 118 ~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~ 197 (369)
T PF02239_consen 118 TGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIA 197 (369)
T ss_dssp --EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEE
T ss_pred cccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeE
Confidence 3 2346778888888886666555 4889888987654332 222345567889999999987665 5567899
Q ss_pred EEECCCCceeEEecc----CCCceEEE-------EEcC--CCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEE
Q 005096 296 LWDAKSGRELCSFHG----HKNMVLCV-------KWNQ--NGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAW 362 (715)
Q Consensus 296 iwDl~s~~~~~~~~~----~~~~I~sl-------~~sp--dg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~ 362 (715)
++|+++++.+..+.. |...+..+ .|.. .+...++.-....+.+||..+++.+.++...... ..+..
T Consensus 198 viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~t 276 (369)
T PF02239_consen 198 VIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKT 276 (369)
T ss_dssp EEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE-
T ss_pred EEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeec
Confidence 999999887766532 22222221 1221 2233323233346678999999999999987777 88889
Q ss_pred ccCCCCEEEEE----eCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECC--CeEEEEecCCCCCcc
Q 005096 363 HPFHEEYFVSG----SLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSND--HTTKFWCRNRPGDTA 434 (715)
Q Consensus 363 sp~~~~~l~sg----s~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~D--g~I~iWdl~~~~~~~ 434 (715)
+| +++++.+. ..++.|.++|.++.+....+.......+..+.|++||+.+..+..| +.|.+||..+.+...
T Consensus 277 hP-~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~ 353 (369)
T PF02239_consen 277 HP-DSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKK 353 (369)
T ss_dssp -T-T-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEE
T ss_pred CC-CCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEE
Confidence 99 67777766 4557899999988755444443333459999999999877665543 369999986644433
|
... |
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.68 E-value=6.3e-15 Score=165.78 Aligned_cols=243 Identities=18% Similarity=0.268 Sum_probs=182.1
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeecCC---CCCeEEEEEec--CCCEEEEEECCCcEEEEECC-C--
Q 005096 188 AIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAH---KESVRDLSFCR--TDLKFCSCSDDTTVKVWDFA-R-- 259 (715)
Q Consensus 188 ~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~~h---~~~I~~l~~sp--d~~~Las~s~Dg~V~iwdl~-~-- 259 (715)
.-..+.|++-...+++++..-.|+|||.+.++....+..+ ...|+.+++.. |..++++|+.||.|+||+-- +
T Consensus 1066 ~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~ 1145 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKW 1145 (1387)
T ss_pred CCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccccccc
Confidence 4456788888889999998889999999999887777543 45788888876 44679999999999999752 1
Q ss_pred --CeeEEEecc-------cCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEec-cCCCceEEEEEcC-CCCEEE
Q 005096 260 --CQEERSLTG-------HGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFH-GHKNMVLCVKWNQ-NGNWVL 328 (715)
Q Consensus 260 --~~~~~~l~~-------~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~-~~~~~I~sl~~sp-dg~~La 328 (715)
.+.+..+.+ ..+.-.-++|.....+|+++++-..|+|||+....++..+- +....|++++-+- .|+.|+
T Consensus 1146 ~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~ 1225 (1387)
T KOG1517|consen 1146 KKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIA 1225 (1387)
T ss_pred CCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEE
Confidence 222222221 11112456787776777777778999999999877766653 3445577766544 579999
Q ss_pred EEECCCeEEEEECCCCe---EEEEeecCCCC--eEEEEEccCCCCEEEEEeCCCcEEEEEcCCCC-ceEEEeeccC--C-
Q 005096 329 TASKDQIIKLYDIRAMK---ELESFRGHRKD--VTALAWHPFHEEYFVSGSLDGSIFHWLVGHET-PQVEIHNVHD--N- 399 (715)
Q Consensus 329 sgs~dg~I~iwDl~t~~---~~~~~~~h~~~--V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~-~~~~~~~~h~--~- 399 (715)
+|..||.|++||.|... .+...+.|... |..+.+.+.+-..|++|+.||.|++||++... ........|. +
T Consensus 1226 AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs 1305 (1387)
T KOG1517|consen 1226 AGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGS 1305 (1387)
T ss_pred EeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCc
Confidence 99999999999998643 46777888877 99999988555679999999999999998842 2222222222 3
Q ss_pred CEEEEEEcCCCCEEEEEECCCeEEEEecCCCC
Q 005096 400 TVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPG 431 (715)
Q Consensus 400 ~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~ 431 (715)
.++++..+.+..+||+|+. +.|+||++.-+.
T Consensus 1306 ~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~ 1336 (1387)
T KOG1517|consen 1306 ALTALTVHEHAPIIASGSA-QLIKIYSLSGEQ 1336 (1387)
T ss_pred cceeeeeccCCCeeeecCc-ceEEEEecChhh
Confidence 5999999999999999998 999999986433
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.6e-16 Score=164.11 Aligned_cols=211 Identities=21% Similarity=0.381 Sum_probs=162.9
Q ss_pred EEEecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEE-eccCCCEEEEEEcCC--CCEEEEEeCCCcEEE
Q 005096 136 VHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMIL-QAHDHAIRSMVWSHN--DNWMVSGDDGGAIKY 212 (715)
Q Consensus 136 ~~~~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l-~~h~~~V~~l~~spd--g~~L~tgs~dg~I~i 212 (715)
+...|.||.+.|+|+.|+.||.+|++|+.|-.|.|||....+++..+ ++|...|.++.|-|. ++++++|..|..|+|
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l 121 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL 121 (758)
T ss_pred hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence 34578999999999999999999999999999999998877766655 589999999999884 568899999999999
Q ss_pred EeCCC----------CceeeeecCCCCCeEEEEEecCC-CEEEEEECCCcEEEEECCCCeeE----------EEecccCC
Q 005096 213 WQNNM----------NNVKANKSAHKESVRDLSFCRTD-LKFCSCSDDTTVKVWDFARCQEE----------RSLTGHGW 271 (715)
Q Consensus 213 wd~~~----------~~~~~~~~~h~~~I~~l~~spd~-~~Las~s~Dg~V~iwdl~~~~~~----------~~l~~~~~ 271 (715)
+|+.. .+....+..|...|..|+..+++ +.+.++++||+|+-+|++..... ..+....-
T Consensus 122 fdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~li 201 (758)
T KOG1310|consen 122 FDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLI 201 (758)
T ss_pred EecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhh
Confidence 99874 23344557889999999999998 78999999999999999763211 11112223
Q ss_pred ceEEEEEcCCC-CEEEEEeCCCcEEEEECCC--------Cc----------eeEEec-cC--------CCc---eEEEEE
Q 005096 272 DVKSVDWHPTK-SLLVSGGKDSLVKLWDAKS--------GR----------ELCSFH-GH--------KNM---VLCVKW 320 (715)
Q Consensus 272 ~I~si~~spdg-~~L~sgs~Dg~I~iwDl~s--------~~----------~~~~~~-~~--------~~~---I~sl~~ 320 (715)
...|++++|.. .+|++|+.|-..++||.+. ++ ++..+. +| ... ++-++|
T Consensus 202 elk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtf 281 (758)
T KOG1310|consen 202 ELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTF 281 (758)
T ss_pred eeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEE
Confidence 56789999865 5899999999999999532 11 222221 11 112 456789
Q ss_pred cCCCCEEEEEECCCeEEEEECCCCeE
Q 005096 321 NQNGNWVLTASKDQIIKLYDIRAMKE 346 (715)
Q Consensus 321 spdg~~Lasgs~dg~I~iwDl~t~~~ 346 (715)
+|+|.-|++.-....|+++|+..++.
T Consensus 282 npNGtElLvs~~gEhVYlfdvn~~~~ 307 (758)
T KOG1310|consen 282 NPNGTELLVSWGGEHVYLFDVNEDKS 307 (758)
T ss_pred CCCCcEEEEeeCCeEEEEEeecCCCC
Confidence 99998888777677899999976543
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.4e-14 Score=144.92 Aligned_cols=280 Identities=15% Similarity=0.239 Sum_probs=192.3
Q ss_pred CCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEe-ccCCCEEEEEEcCCC-CEEEEEeCCCcEEEEeCCCC--
Q 005096 143 NRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQ-AHDHAIRSMVWSHND-NWMVSGDDGGAIKYWQNNMN-- 218 (715)
Q Consensus 143 H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~-~h~~~V~~l~~spdg-~~L~tgs~dg~I~iwd~~~~-- 218 (715)
....+..++|++.-..+|++..|-.|+|||-+. +....++ .....|+|++|-|.+ +.|++|+. +-|+||..+..
T Consensus 97 s~~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr-~gIciW~~s~tln 174 (445)
T KOG2139|consen 97 SEIDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCR-AGICIWSDSRTLN 174 (445)
T ss_pred hhcceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeec-ceeEEEEcCcccc
Confidence 345688999999888899999999999999777 4444444 345789999999975 56777776 45899975431
Q ss_pred --ce----------eeeecCCCCCeEEEEEecCCCEEEEEEC-CCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEE
Q 005096 219 --NV----------KANKSAHKESVRDLSFCRTDLKFCSCSD-DTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLL 285 (715)
Q Consensus 219 --~~----------~~~~~~h~~~I~~l~~spd~~~Las~s~-Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L 285 (715)
.. +....+| ..|+++.|.+|+..+++++. |..|.|||.+++..+.......+.++-+.|+||+.+|
T Consensus 175 ~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~l 253 (445)
T KOG2139|consen 175 ANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVL 253 (445)
T ss_pred cccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEE
Confidence 11 1111233 68999999999999999876 6789999999988877665567789999999999999
Q ss_pred EEEeCCCcEEEEECC-CCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCC----C--------eE---EEE
Q 005096 286 VSGGKDSLVKLWDAK-SGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRA----M--------KE---LES 349 (715)
Q Consensus 286 ~sgs~Dg~I~iwDl~-s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t----~--------~~---~~~ 349 (715)
+++.-|+..++|+.. +..+.+-.. ..+.|...+|+|+|++|+.++. |.-+||.+.- . +. +..
T Consensus 254 faAt~davfrlw~e~q~wt~erw~l-gsgrvqtacWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~~~k~~lliaD 331 (445)
T KOG2139|consen 254 FAATCDAVFRLWQENQSWTKERWIL-GSGRVQTACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQSIKRVLLIAD 331 (445)
T ss_pred EEecccceeeeehhcccceecceec-cCCceeeeeecCCCCEEEEEEc-CCceEEEEeecCCCccccCcccceeeeeecc
Confidence 999999999999554 333333333 3458999999999998776653 3334444321 0 00 111
Q ss_pred ee---------cCCCCeEEEEEccCCCCEEEEEeCCC--------cEEEEEcCCCCceEEEeec--cCCCEEEEEEcC--
Q 005096 350 FR---------GHRKDVTALAWHPFHEEYFVSGSLDG--------SIFHWLVGHETPQVEIHNV--HDNTVWDLAWHP-- 408 (715)
Q Consensus 350 ~~---------~h~~~V~~l~~sp~~~~~l~sgs~DG--------~I~iwd~~~~~~~~~~~~~--h~~~V~~l~~sp-- 408 (715)
+. ...+.+.+++|.| .+++|++.-..+ .|.+||.+..-.......+ ....-..|+|++
T Consensus 332 L~e~ti~ag~~l~cgeaq~lawDp-sGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~ 410 (445)
T KOG2139|consen 332 LQEVTICAGQRLCCGEAQCLAWDP-SGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLK 410 (445)
T ss_pred chhhhhhcCcccccCccceeeECC-CCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecc
Confidence 10 1245688999999 788888765443 3667777654433222111 111233445544
Q ss_pred -CCCEEEEEECCCeEEEEecC
Q 005096 409 -IGYLLCSGSNDHTTKFWCRN 428 (715)
Q Consensus 409 -dg~~L~sgs~Dg~I~iWdl~ 428 (715)
++.+|.++=..|.|.-|++.
T Consensus 411 n~g~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 411 NEGRLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred cCCcEEEEEeccCceEeeeeE
Confidence 46777777778888888764
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.67 E-value=9.6e-15 Score=166.82 Aligned_cols=259 Identities=18% Similarity=0.249 Sum_probs=189.9
Q ss_pred CCceEEEEeccCCCEEEEEEcCCC-CEEEEEeCCCcEEEEeCCCC-------ceeeeecCCCCCeEEEEEecCCCEEEEE
Q 005096 175 SFNFEMILQAHDHAIRSMVWSHND-NWMVSGDDGGAIKYWQNNMN-------NVKANKSAHKESVRDLSFCRTDLKFCSC 246 (715)
Q Consensus 175 ~~~~~~~l~~h~~~V~~l~~spdg-~~L~tgs~dg~I~iwd~~~~-------~~~~~~~~h~~~I~~l~~spd~~~Las~ 246 (715)
+|.++..+..|...|..++.+.+. .+|++|+.||+|++||+..- +...++......+.++..+.++..+|++
T Consensus 1037 ~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~ 1116 (1431)
T KOG1240|consen 1037 RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVS 1116 (1431)
T ss_pred cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEE
Confidence 366788888899999999988765 89999999999999997542 2334444567889999999999999999
Q ss_pred ECCCcEEEEECCCCee-------EEEec--ccCCceEEEEEcCC-CC-EEEEEeCCCcEEEEECCCCceeEEec--cCCC
Q 005096 247 SDDTTVKVWDFARCQE-------ERSLT--GHGWDVKSVDWHPT-KS-LLVSGGKDSLVKLWDAKSGRELCSFH--GHKN 313 (715)
Q Consensus 247 s~Dg~V~iwdl~~~~~-------~~~l~--~~~~~I~si~~spd-g~-~L~sgs~Dg~I~iwDl~s~~~~~~~~--~~~~ 313 (715)
+.||.|++.+++.... .+... ..+.-|..-+|... .. .|+.+...+.|..||+++...+.+++ ...+
T Consensus 1117 t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG 1196 (1431)
T KOG1240|consen 1117 TKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHG 1196 (1431)
T ss_pred cCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCcccc
Confidence 9999999999865211 11111 12222333344332 23 68888888999999999876665543 3457
Q ss_pred ceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEee-cCCCCeEEEEEccCCC--CEEEEEe--CCCcEEEEEcCCCC
Q 005096 314 MVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFR-GHRKDVTALAWHPFHE--EYFVSGS--LDGSIFHWLVGHET 388 (715)
Q Consensus 314 ~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~-~h~~~V~~l~~sp~~~--~~l~sgs--~DG~I~iwd~~~~~ 388 (715)
.|++++.++.++|+++|+..|.+.+||+|-...+.++. .+...|..+..++... .+.++++ ..+.|.+|++.++.
T Consensus 1197 ~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~ 1276 (1431)
T KOG1240|consen 1197 LVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGL 1276 (1431)
T ss_pred ceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCc
Confidence 79999999999999999999999999999888887776 4557788888877554 5555544 46789999998876
Q ss_pred ceEEEeec------------------cCCCEEEEEEcCCCCEEEEEECCCeEEEEecCCCCCc
Q 005096 389 PQVEIHNV------------------HDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGDT 433 (715)
Q Consensus 389 ~~~~~~~~------------------h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~~~ 433 (715)
....+... +.-....+++...+.++.+|+.|..|+.||.......
T Consensus 1277 ~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~s 1339 (1431)
T KOG1240|consen 1277 RQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEIS 1339 (1431)
T ss_pred ceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccc
Confidence 55444432 0111223344445678999999999999998765443
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.67 E-value=6.3e-15 Score=147.25 Aligned_cols=273 Identities=11% Similarity=0.255 Sum_probs=196.9
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEE-EEeCCCcEEEEeCCCCceeeeecCC
Q 005096 149 RVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMV-SGDDGGAIKYWQNNMNNVKANKSAH 227 (715)
Q Consensus 149 ~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~-tgs~dg~I~iwd~~~~~~~~~~~~h 227 (715)
-++|||+|++||+++.- .+.|-|.++.+....+.. -..|.-|.|..|..+++ ....|+.|.+|++...+-...+...
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~c-ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg 90 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLC-LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEG 90 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHH-HHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccC
Confidence 36799999999999876 788999888776555443 35677889998887665 4577889999999998888888888
Q ss_pred CCCeEEEEEecCCCEEE-EEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCC---------------
Q 005096 228 KESVRDLSFCRTDLKFC-SCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKD--------------- 291 (715)
Q Consensus 228 ~~~I~~l~~spd~~~La-s~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~D--------------- 291 (715)
...+..++|+|||+.|+ +...|-.|.||.+.+.+.... .-.+..+..++|++||++.+.++.-
T Consensus 91 ~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~-~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ 169 (447)
T KOG4497|consen 91 QAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLL-PHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWI 169 (447)
T ss_pred CCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEe-cccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHH
Confidence 89999999999996655 556688999999987655433 3344556889999999887766531
Q ss_pred ---------------------CcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEE-
Q 005096 292 ---------------------SLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELES- 349 (715)
Q Consensus 292 ---------------------g~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~- 349 (715)
+.|.+||.--.-.+..++ ..-.+..++|+|.+++|++|+.|+.+||.+--+++.+.+
T Consensus 170 ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe-~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~ef 248 (447)
T KOG4497|consen 170 LLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYE-RGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEF 248 (447)
T ss_pred HHHhcCCCcccccCceECCCCcEEEEecchhhheeeeee-eccceeEEEeccccceEEeeccchhhhhhceeeeeehhhh
Confidence 223444422111111222 234588899999999999999999998876543332111
Q ss_pred -----------------------------------------------------------ee------cCCCCeEEEEEcc
Q 005096 350 -----------------------------------------------------------FR------GHRKDVTALAWHP 364 (715)
Q Consensus 350 -----------------------------------------------------------~~------~h~~~V~~l~~sp 364 (715)
++ ...-.+.-++|++
T Consensus 249 lhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~ 328 (447)
T KOG4497|consen 249 LHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSC 328 (447)
T ss_pred ccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecC
Confidence 00 0112356789998
Q ss_pred CCCCEEEEEeCC--CcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecC
Q 005096 365 FHEEYFVSGSLD--GSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRN 428 (715)
Q Consensus 365 ~~~~~l~sgs~D--G~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~ 428 (715)
+..+++|-.+. +.+.+||+...+....+. ....|....|+|....|+.+.....+++|...
T Consensus 329 -Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi--Qk~piraf~WdP~~prL~vctg~srLY~W~ps 391 (447)
T KOG4497|consen 329 -DSTYAATRNDKYPNALWLWDLQNLKLHAVLI--QKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPS 391 (447)
T ss_pred -CceEEeeecCCCCceEEEEechhhhhhhhhh--hccceeEEEeCCCCceEEEEcCCceEEEEcCC
Confidence 77787776543 468999997765433333 35689999999998888888888889999764
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.5e-14 Score=141.91 Aligned_cols=240 Identities=13% Similarity=0.153 Sum_probs=174.2
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEE-CC------CcEEEEECCCC
Q 005096 188 AIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCS-DD------TTVKVWDFARC 260 (715)
Q Consensus 188 ~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s-~D------g~V~iwdl~~~ 260 (715)
...+++|+.|...++++.++| .+||+.+--+.......+...+.-+...-..++|+..+ .+ ++|.|||-...
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~ 85 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKE 85 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccC
Confidence 345699999999999888766 79998876433222222222222122112334554433 22 57999997666
Q ss_pred eeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECC-CCceeEEecc--CCCceEEEEEcCCCCEEEE-EECCCeE
Q 005096 261 QEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAK-SGRELCSFHG--HKNMVLCVKWNQNGNWVLT-ASKDQII 336 (715)
Q Consensus 261 ~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~-s~~~~~~~~~--~~~~I~sl~~spdg~~Las-gs~dg~I 336 (715)
+++.++. ....|.+|.+.. +.|++.. ++.|+||... +-+.++.+.. ....+.+++-..+..+||. |..-|.|
T Consensus 86 ~~i~el~-f~~~I~~V~l~r--~riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~Gqv 161 (346)
T KOG2111|consen 86 RCIIELS-FNSEIKAVKLRR--DRIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQV 161 (346)
T ss_pred cEEEEEE-eccceeeEEEcC--CeEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceE
Confidence 7777765 667899999985 4566654 4789999987 4555655542 2334555554445556665 4467999
Q ss_pred EEEECCCCeE--EEEeecCCCCeEEEEEccCCCCEEEEEeCCCc-EEEEEcCCCCceEEEeecc-CCCEEEEEEcCCCCE
Q 005096 337 KLYDIRAMKE--LESFRGHRKDVTALAWHPFHEEYFVSGSLDGS-IFHWLVGHETPQVEIHNVH-DNTVWDLAWHPIGYL 412 (715)
Q Consensus 337 ~iwDl~t~~~--~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~-I~iwd~~~~~~~~~~~~~h-~~~V~~l~~spdg~~ 412 (715)
.|-|+...+. ...+..|++.|.|++.+- .+.+|||+|..|+ |+|||..++..+.++..+- ...|.+++|+++..+
T Consensus 162 Qi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~-~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~ 240 (346)
T KOG2111|consen 162 QIVDLASTKPNAPSIINAHDSDIACVALNL-QGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSW 240 (346)
T ss_pred EEEEhhhcCcCCceEEEcccCceeEEEEcC-CccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccE
Confidence 9999987665 478889999999999998 8999999999998 8999999999888877653 357999999999999
Q ss_pred EEEEECCCeEEEEecCCCCCc
Q 005096 413 LCSGSNDHTTKFWCRNRPGDT 433 (715)
Q Consensus 413 L~sgs~Dg~I~iWdl~~~~~~ 433 (715)
|+++|+.|+|+||.+......
T Consensus 241 LavsSdKgTlHiF~l~~~~~~ 261 (346)
T KOG2111|consen 241 LAVSSDKGTLHIFSLRDTENT 261 (346)
T ss_pred EEEEcCCCeEEEEEeecCCCC
Confidence 999999999999999764433
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.4e-16 Score=164.30 Aligned_cols=245 Identities=16% Similarity=0.262 Sum_probs=169.0
Q ss_pred CceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeee-cCCCCCeEEEEEec--CCCEEEEEECCCcE
Q 005096 176 FNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANK-SAHKESVRDLSFCR--TDLKFCSCSDDTTV 252 (715)
Q Consensus 176 ~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~-~~h~~~I~~l~~sp--d~~~Las~s~Dg~V 252 (715)
.....++.+|.+.|+|++|+.||.+|++|++|-.|.|||.-..+++..+ .+|...|.++.|-| +++.+++|..|..|
T Consensus 40 L~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i 119 (758)
T KOG1310|consen 40 LDLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLI 119 (758)
T ss_pred cchhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceE
Confidence 3456788999999999999999999999999999999998766655544 68999999999988 56789999999999
Q ss_pred EEEECCCC----------eeEEEecccCCceEEEEEcCCC-CEEEEEeCCCcEEEEECCCCce----------eEEeccC
Q 005096 253 KVWDFARC----------QEERSLTGHGWDVKSVDWHPTK-SLLVSGGKDSLVKLWDAKSGRE----------LCSFHGH 311 (715)
Q Consensus 253 ~iwdl~~~----------~~~~~l~~~~~~I~si~~spdg-~~L~sgs~Dg~I~iwDl~s~~~----------~~~~~~~ 311 (715)
+++|+.+. +....+..|...|+.|+..+++ +.+.++++||+|+-||++.... +..+...
T Consensus 120 ~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~ 199 (758)
T KOG1310|consen 120 KLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQ 199 (758)
T ss_pred EEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchh
Confidence 99999742 2344556788899999999988 7999999999999999986321 1111222
Q ss_pred CCceEEEEEcC-CCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCce
Q 005096 312 KNMVLCVKWNQ-NGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQ 390 (715)
Q Consensus 312 ~~~I~sl~~sp-dg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~ 390 (715)
--...|+.++| +..+|++|+.|-..++||.+.. +..+..... ..++|- -.++.|+-|.-...+..
T Consensus 200 lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~--lks~~s~~~----~~~~pp--------~~~~cv~yf~p~hlkn~ 265 (758)
T KOG1310|consen 200 LIELKCLTISPSRPYYLAVGGSDPFARLYDRRRV--LKSFRSDGT----MNTCPP--------KDCRCVRYFSPGHLKNS 265 (758)
T ss_pred hheeeeeeecCCCCceEEecCCCchhhhhhhhhh--ccCCCCCcc----ccCCCC--------cccchhheecCccccCc
Confidence 23567899999 5578999999999999996432 111111000 000000 01122222221111000
Q ss_pred EEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCCCCCcc
Q 005096 391 VEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGDTA 434 (715)
Q Consensus 391 ~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~~~~ 434 (715)
......--..++-+.|+|+|.-|++.-....|+++|++......
T Consensus 266 ~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~ 309 (758)
T KOG1310|consen 266 QGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPT 309 (758)
T ss_pred ccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCce
Confidence 00000011246778999998766665556689999998765543
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.8e-16 Score=164.63 Aligned_cols=235 Identities=17% Similarity=0.252 Sum_probs=201.2
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEE
Q 005096 186 DHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERS 265 (715)
Q Consensus 186 ~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~ 265 (715)
+..-..+.++.+|++|+.|+..|.|..+|+.++.+...+. ....|.++.|..+..+||++- ...++||| +.+.+++.
T Consensus 129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~-v~Etv~Dv~~LHneq~~AVAQ-K~y~yvYD-~~GtElHC 205 (545)
T KOG1272|consen 129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEIN-VMETVRDVTFLHNEQFFAVAQ-KKYVYVYD-NNGTELHC 205 (545)
T ss_pred ccCCeeeeecCCccEEEecCCccceeeeecccceeeeeee-hhhhhhhhhhhcchHHHHhhh-hceEEEec-CCCcEEee
Confidence 4455688999999999999999999999999998887764 466789999998888777664 55799999 56778888
Q ss_pred ecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCe
Q 005096 266 LTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMK 345 (715)
Q Consensus 266 l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~ 345 (715)
++.+ ..|..+.|-|..-+|++++..|.++.-|+.+|+.+..+....+.+..++-+|-...+-+|..+|+|.+|.-.+.+
T Consensus 206 lk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~ske 284 (545)
T KOG1272|consen 206 LKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKE 284 (545)
T ss_pred hhhc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcc
Confidence 8754 478999999999999999999999999999999999998888899999999988889999999999999999999
Q ss_pred EEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEE
Q 005096 346 ELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFW 425 (715)
Q Consensus 346 ~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iW 425 (715)
.+..+.+|.+.|.+|++.+ +++|++|.+.|..|+|||++.-..+..+.. ......+++|..| +++++....|.||
T Consensus 285 PLvKiLcH~g~V~siAv~~-~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t--p~~a~~ls~Sqkg--lLA~~~G~~v~iw 359 (545)
T KOG1272|consen 285 PLVKILCHRGPVSSIAVDR-GGRYMATTGLDRKVKIWDLRNFYQLHTYRT--PHPASNLSLSQKG--LLALSYGDHVQIW 359 (545)
T ss_pred hHHHHHhcCCCcceEEECC-CCcEEeecccccceeEeeeccccccceeec--CCCcccccccccc--ceeeecCCeeeee
Confidence 9999999999999999999 999999999999999999998776555554 3467788888666 4445556689999
Q ss_pred ecCC
Q 005096 426 CRNR 429 (715)
Q Consensus 426 dl~~ 429 (715)
.-..
T Consensus 360 ~d~~ 363 (545)
T KOG1272|consen 360 KDAL 363 (545)
T ss_pred hhhh
Confidence 6433
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=6.8e-14 Score=139.96 Aligned_cols=274 Identities=14% Similarity=0.261 Sum_probs=194.2
Q ss_pred ccEEEEEEcCCCCEEEEE-eCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEE-EEEeCCCcEEEEeCCCCceee
Q 005096 145 CSINRVLWTPTGRRLITG-SQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWM-VSGDDGGAIKYWQNNMNNVKA 222 (715)
Q Consensus 145 ~~I~~l~~spdg~~Latg-s~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L-~tgs~dg~I~iwd~~~~~~~~ 222 (715)
+.|.-|.|..|..+++++ ..|+.|.+|++..-+....+......+.+++|||||+.| .+...+-.|.||.+.+.+...
T Consensus 49 dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~ 128 (447)
T KOG4497|consen 49 DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL 128 (447)
T ss_pred HHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE
Confidence 346667788888776654 668899999999988888888888999999999999655 567778999999998876544
Q ss_pred eecCCCCCeEEEEEecCCCEEEEEECC------------------------------------CcEEEEECCCCeeEEEe
Q 005096 223 NKSAHKESVRDLSFCRTDLKFCSCSDD------------------------------------TTVKVWDFARCQEERSL 266 (715)
Q Consensus 223 ~~~~h~~~I~~l~~spd~~~Las~s~D------------------------------------g~V~iwdl~~~~~~~~l 266 (715)
. ...+..+..++|++|+++.+.+++. ..+.|||.--.-.+..+
T Consensus 129 ~-~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aY 207 (447)
T KOG4497|consen 129 L-PHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAY 207 (447)
T ss_pred e-cccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeee
Confidence 3 3345566889999999887766542 22444443211111122
Q ss_pred cccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEE---------------------------------------
Q 005096 267 TGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCS--------------------------------------- 307 (715)
Q Consensus 267 ~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~--------------------------------------- 307 (715)
. .+-.+..++|+|.+++|++|+.|+.+||.+--+.+.+.+
T Consensus 208 e-~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a 286 (447)
T KOG4497|consen 208 E-RGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEA 286 (447)
T ss_pred e-eccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCcccc
Confidence 1 235689999999999999999999988865322111000
Q ss_pred ---------------------ec------cCCCceEEEEEcCCCCEEEEEECC--CeEEEEECCCCeEEEEeecCCCCeE
Q 005096 308 ---------------------FH------GHKNMVLCVKWNQNGNWVLTASKD--QIIKLYDIRAMKELESFRGHRKDVT 358 (715)
Q Consensus 308 ---------------------~~------~~~~~I~sl~~spdg~~Lasgs~d--g~I~iwDl~t~~~~~~~~~h~~~V~ 358 (715)
++ .....+.-++|++|..++++-... +.+.|||++..+....+ .....|.
T Consensus 287 ~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avL-iQk~pir 365 (447)
T KOG4497|consen 287 HIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVL-IQKHPIR 365 (447)
T ss_pred CccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhh-hhcccee
Confidence 00 012235678999999998887533 57999999976554433 4678899
Q ss_pred EEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEE
Q 005096 359 ALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKF 424 (715)
Q Consensus 359 ~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~i 424 (715)
...|+| +...|+.+....++++|...... .+... ...-.|..+.|+-+|..++..+.|....-
T Consensus 366 af~WdP-~~prL~vctg~srLY~W~psg~~-~V~vP-~~GF~i~~l~W~~~g~~i~l~~kDafc~a 428 (447)
T KOG4497|consen 366 AFEWDP-GRPRLVVCTGKSRLYFWAPSGPR-VVGVP-KKGFNIQKLQWLQPGEFIVLCGKDAFCVA 428 (447)
T ss_pred EEEeCC-CCceEEEEcCCceEEEEcCCCce-EEecC-CCCceeeeEEecCCCcEEEEEcCCceEEE
Confidence 999999 66666666667789999875532 22222 23458999999999999999999975544
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=6.9e-14 Score=155.56 Aligned_cols=219 Identities=11% Similarity=0.138 Sum_probs=157.7
Q ss_pred cCCCCccEEEEEEcCCCCEEEEEeC---CCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEE-eCCC--cEEEE
Q 005096 140 LNKNRCSINRVLWTPTGRRLITGSQ---SGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSG-DDGG--AIKYW 213 (715)
Q Consensus 140 l~~H~~~I~~l~~spdg~~Latgs~---dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tg-s~dg--~I~iw 213 (715)
+..+...+.+.+|||||+.|+..+. +..|++||+.+++.... ....+.+..++|++||+.|+.. +.+| .|++|
T Consensus 194 lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l-~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~ 272 (429)
T PRK03629 194 VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQV-ASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVM 272 (429)
T ss_pred eecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEc-cCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEE
Confidence 3445667899999999999987653 35799999988764433 3334445678999999988754 4455 48889
Q ss_pred eCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECC-C--cEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeC
Q 005096 214 QNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDD-T--TVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGK 290 (715)
Q Consensus 214 d~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~D-g--~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~ 290 (715)
|+++++..... .+...+....|++|++.|+..+.+ + .|+++|+.+++. ..+......+.+.+|++||++|+..+.
T Consensus 273 d~~tg~~~~lt-~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~SpDG~~Ia~~~~ 350 (429)
T PRK03629 273 DLASGQIRQVT-DGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSS 350 (429)
T ss_pred ECCCCCEEEcc-CCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe-EEeecCCCCccCEEECCCCCEEEEEEc
Confidence 99887665443 344567889999999998877764 3 455557766544 334434445678999999998887664
Q ss_pred C---CcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCe---EEEEECCCCeEEEEeecCCCCeEEEEEcc
Q 005096 291 D---SLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQI---IKLYDIRAMKELESFRGHRKDVTALAWHP 364 (715)
Q Consensus 291 D---g~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~---I~iwDl~t~~~~~~~~~h~~~V~~l~~sp 364 (715)
+ ..|.+||+++++.. .+.. ........|++||++|++++.++. +.++++ +++....+..+...+...+|+|
T Consensus 351 ~~g~~~I~~~dl~~g~~~-~Lt~-~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~-~G~~~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 351 NGGQQHIAKQDLATGGVQ-VLTD-TFLDETPSIAPNGTMVIYSSSQGMGSVLNLVST-DGRFKARLPATDGQVKFPAWSP 427 (429)
T ss_pred cCCCceEEEEECCCCCeE-EeCC-CCCCCCceECCCCCEEEEEEcCCCceEEEEEEC-CCCCeEECccCCCCcCCcccCC
Confidence 3 35888999887643 3332 223457889999999999887764 677777 4666777777888899999987
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.7e-14 Score=146.17 Aligned_cols=261 Identities=14% Similarity=0.206 Sum_probs=196.2
Q ss_pred CCccEEEEEEcCCCC--EEEEEeCCCeEEEEeCCCCceEEEE------eccCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 005096 143 NRCSINRVLWTPTGR--RLITGSQSGEFTLWNGQSFNFEMIL------QAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQ 214 (715)
Q Consensus 143 H~~~I~~l~~spdg~--~Latgs~dg~I~Iwd~~~~~~~~~l------~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd 214 (715)
....|++++|.-|++ .|+..+.|..+..+++....+...+ ......|..++.. +..|++|..+|.+.+|.
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~~ 131 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA--DGTLITCVSSGNLQVRH 131 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc--CCEEEEEecCCcEEEEe
Confidence 455788888887664 3444446666777777665554443 3345566666654 45788889999999999
Q ss_pred CCCCc----eeeeecCCCCCeEEEEEecCCCE-EEEEECC--CcEEEEECCCCeeEEEeccc---------CCceEEEEE
Q 005096 215 NNMNN----VKANKSAHKESVRDLSFCRTDLK-FCSCSDD--TTVKVWDFARCQEERSLTGH---------GWDVKSVDW 278 (715)
Q Consensus 215 ~~~~~----~~~~~~~h~~~I~~l~~spd~~~-Las~s~D--g~V~iwdl~~~~~~~~l~~~---------~~~I~si~~ 278 (715)
.+.+. ....+ .....+..+.-++...+ +++|+.. ..+.|||++..+.+..-+.- .-.++++.|
T Consensus 132 ~k~~d~hss~l~~l-a~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~F 210 (412)
T KOG3881|consen 132 DKSGDLHSSKLIKL-ATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRF 210 (412)
T ss_pred ccCCccccccceee-ecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeecccee
Confidence 87443 11222 22345556666655544 5568888 88999999887555443321 124678889
Q ss_pred cCC--CCEEEEEeCCCcEEEEECCCC-ceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEE-eecCC
Q 005096 279 HPT--KSLLVSGGKDSLVKLWDAKSG-RELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELES-FRGHR 354 (715)
Q Consensus 279 spd--g~~L~sgs~Dg~I~iwDl~s~-~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~-~~~h~ 354 (715)
.+. ...|++++.-+.|++||.+.+ +.+..+.-....|+++...+++++|++|...+.+..||++.++.+.. +++..
T Consensus 211 l~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~t 290 (412)
T KOG3881|consen 211 LEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGIT 290 (412)
T ss_pred cCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCcc
Confidence 887 789999999999999999975 56777877788999999999999999999999999999999999877 88999
Q ss_pred CCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCC
Q 005096 355 KDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPI 409 (715)
Q Consensus 355 ~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd 409 (715)
+.|++|..++ ...+|++++.|..|+|+|+.+...+..++. ...+++|.+..+
T Consensus 291 Gsirsih~hp-~~~~las~GLDRyvRIhD~ktrkll~kvYv--Ks~lt~il~~~~ 342 (412)
T KOG3881|consen 291 GSIRSIHCHP-THPVLASCGLDRYVRIHDIKTRKLLHKVYV--KSRLTFILLRDD 342 (412)
T ss_pred CCcceEEEcC-CCceEEeeccceeEEEeecccchhhhhhhh--hccccEEEecCC
Confidence 9999999999 889999999999999999998666555543 456777777554
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=5e-14 Score=156.76 Aligned_cols=237 Identities=11% Similarity=0.093 Sum_probs=153.8
Q ss_pred CeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCC---CcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCE
Q 005096 166 GEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDG---GAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLK 242 (715)
Q Consensus 166 g~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~d---g~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~ 242 (715)
..|.+||.+. ...+.+..+...+.+.+|++|++.|+..+.+ ..|.+||+.+++.... ......+.+.+|++|++.
T Consensus 176 ~~L~~~D~dG-~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l-~~~~g~~~~~~~SPDG~~ 253 (427)
T PRK02889 176 YQLQISDADG-QNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVV-ANFKGSNSAPAWSPDGRT 253 (427)
T ss_pred cEEEEECCCC-CCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEe-ecCCCCccceEECCCCCE
Confidence 4678888743 4444555677889999999999999876643 3599999988865433 334456678999999998
Q ss_pred EE-EEECCCcEEEEE--CCCCeeEEEecccCCceEEEEEcCCCCEEEEEeC-CCcEEEE--ECCCCceeEEeccCCCceE
Q 005096 243 FC-SCSDDTTVKVWD--FARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGK-DSLVKLW--DAKSGRELCSFHGHKNMVL 316 (715)
Q Consensus 243 La-s~s~Dg~V~iwd--l~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~-Dg~I~iw--Dl~s~~~~~~~~~~~~~I~ 316 (715)
|+ +.+.++...||. +..+. ...+..+...+.+.+|++||+.|+..+. ++...|| |+.+++... +........
T Consensus 254 la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~-lt~~g~~~~ 331 (427)
T PRK02889 254 LAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQR-VTFTGSYNT 331 (427)
T ss_pred EEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEE-EecCCCCcC
Confidence 86 456777766665 44433 4555555555678899999998876654 4555666 445544322 222233345
Q ss_pred EEEEcCCCCEEEEEECCC---eEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEE-EEeCCCcEEEEEcCCCCceEE
Q 005096 317 CVKWNQNGNWVLTASKDQ---IIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFV-SGSLDGSIFHWLVGHETPQVE 392 (715)
Q Consensus 317 sl~~spdg~~Lasgs~dg---~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~-sgs~DG~I~iwd~~~~~~~~~ 392 (715)
..+|++||++|+..+.++ .|.+||+.+++... +.. ........|++ +++.|+ +...+|.-.+|-+........
T Consensus 332 ~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~-~~~~~~p~~sp-dg~~l~~~~~~~g~~~l~~~~~~g~~~~ 408 (427)
T PRK02889 332 SPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA-LTD-TTRDESPSFAP-NGRYILYATQQGGRSVLAAVSSDGRIKQ 408 (427)
T ss_pred ceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE-ccC-CCCccCceECC-CCCEEEEEEecCCCEEEEEEECCCCceE
Confidence 689999999999877654 69999998876543 322 23446789999 555554 444444433333322233333
Q ss_pred EeeccCCCEEEEEEcCC
Q 005096 393 IHNVHDNTVWDLAWHPI 409 (715)
Q Consensus 393 ~~~~h~~~V~~l~~spd 409 (715)
....+.+.+...+|+|-
T Consensus 409 ~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 409 RLSVQGGDVREPSWGPF 425 (427)
T ss_pred EeecCCCCCCCCccCCC
Confidence 33345667777888763
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=6.1e-15 Score=155.81 Aligned_cols=170 Identities=19% Similarity=0.403 Sum_probs=136.7
Q ss_pred cCCCCEEEEEeCCCeEEEEeCCCCceEEEEe----ccCCCEEEEEEcCCC-CEEEEEeCCCcEEEEeCCCC---------
Q 005096 153 TPTGRRLITGSQSGEFTLWNGQSFNFEMILQ----AHDHAIRSMVWSHND-NWMVSGDDGGAIKYWQNNMN--------- 218 (715)
Q Consensus 153 spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~----~h~~~V~~l~~spdg-~~L~tgs~dg~I~iwd~~~~--------- 218 (715)
.+++--|++|-..|.|.+.|....+..+.+. .....|+|+.|-+.+ ..++++-.+|.+++||.+..
T Consensus 182 ~~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~ 261 (636)
T KOG2394|consen 182 TPKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQ 261 (636)
T ss_pred CCCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCccc
Confidence 4566678888888999999866533322221 234789999998865 45667788999999975211
Q ss_pred -----c--------------eeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEc
Q 005096 219 -----N--------------VKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWH 279 (715)
Q Consensus 219 -----~--------------~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~s 279 (715)
. .+..+......|..++|++|+++||+.+.||.+||||..+.+.+..++..-+...|++|+
T Consensus 262 ~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWS 341 (636)
T KOG2394|consen 262 ALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWS 341 (636)
T ss_pred ccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEc
Confidence 0 111112234578899999999999999999999999999988888888778899999999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCceEEEEEcC
Q 005096 280 PTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQ 322 (715)
Q Consensus 280 pdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~sp 322 (715)
|||++|++|++|..|.||.+...+.+..-.+|+++|+.|+|.+
T Consensus 342 PDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 342 PDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred CCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence 9999999999999999999999999999999999999999986
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=9.7e-14 Score=154.87 Aligned_cols=234 Identities=13% Similarity=0.094 Sum_probs=158.7
Q ss_pred CeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCC---CcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCE
Q 005096 166 GEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDG---GAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLK 242 (715)
Q Consensus 166 g~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~d---g~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~ 242 (715)
..|+|||.... ..+.+..+...+.+.+|++|++.|+.++.+ ..|++||+.+++.... ........+++|++|++.
T Consensus 184 ~~l~i~D~~g~-~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l-~~~~g~~~~~~~SpDG~~ 261 (433)
T PRK04922 184 YALQVADSDGY-NPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELV-ASFRGINGAPSFSPDGRR 261 (433)
T ss_pred EEEEEECCCCC-CceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEe-ccCCCCccCceECCCCCE
Confidence 36899998644 445566677789999999999999877643 4699999988765433 333445567899999988
Q ss_pred EE-EEECCC--cEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeC-CCc--EEEEECCCCceeEEeccCCCceE
Q 005096 243 FC-SCSDDT--TVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGK-DSL--VKLWDAKSGRELCSFHGHKNMVL 316 (715)
Q Consensus 243 La-s~s~Dg--~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~-Dg~--I~iwDl~s~~~~~~~~~~~~~I~ 316 (715)
|+ +.+.++ .|++||+.+++. ..+..+......++|++|++.|++++. ++. |+++|+.+++... +........
T Consensus 262 l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt~~g~~~~ 339 (433)
T PRK04922 262 LALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-LTFQGNYNA 339 (433)
T ss_pred EEEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-eecCCCCcc
Confidence 76 445555 599999987764 445545555678999999998887764 444 7777877765433 322334455
Q ss_pred EEEEcCCCCEEEEEECCC---eEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeC-CC--cEEEEEcCCCCce
Q 005096 317 CVKWNQNGNWVLTASKDQ---IIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSL-DG--SIFHWLVGHETPQ 390 (715)
Q Consensus 317 sl~~spdg~~Lasgs~dg---~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~-DG--~I~iwd~~~~~~~ 390 (715)
.++|++||++|+..+.++ .|.+||+.+++.. .+. +........|++ ++++|+..+. .+ .|.+++++.. .
T Consensus 340 ~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~sp-dG~~i~~~s~~~g~~~L~~~~~~g~--~ 414 (433)
T PRK04922 340 RASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAP-NGSMVLYATREGGRGVLAAVSTDGR--V 414 (433)
T ss_pred CEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECC-CCCEEEEEEecCCceEEEEEECCCC--c
Confidence 789999999998876443 6999999877654 333 223455679999 6665554443 33 4666666432 2
Q ss_pred EEEeeccCCCEEEEEEcC
Q 005096 391 VEIHNVHDNTVWDLAWHP 408 (715)
Q Consensus 391 ~~~~~~h~~~V~~l~~sp 408 (715)
...+..+.+.+...+|++
T Consensus 415 ~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 415 RQRLVSADGEVREPAWSP 432 (433)
T ss_pred eEEcccCCCCCCCCccCC
Confidence 233333456677778875
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=8.2e-14 Score=155.04 Aligned_cols=219 Identities=13% Similarity=0.146 Sum_probs=153.1
Q ss_pred cCCCCccEEEEEEcCCCCEEEEEeCC---CeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEE-EEeCCCcEEEEe-
Q 005096 140 LNKNRCSINRVLWTPTGRRLITGSQS---GEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMV-SGDDGGAIKYWQ- 214 (715)
Q Consensus 140 l~~H~~~I~~l~~spdg~~Latgs~d---g~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~-tgs~dg~I~iwd- 214 (715)
+..+...|.+.+|+|||+.|+..+.+ ..|++||+.+++... +....+.+.+.+|++|++.|+ +.+.++...||.
T Consensus 191 l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~ 269 (427)
T PRK02889 191 ALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTV 269 (427)
T ss_pred eccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCCceEEEE
Confidence 34567789999999999999987653 359999999887654 333456677899999999886 567778766665
Q ss_pred -CCCCceeeeecCCCCCeEEEEEecCCCEEEEEEC-CCcEEEEEC--CCCeeEEEecccCCceEEEEEcCCCCEEEEEeC
Q 005096 215 -NNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSD-DTTVKVWDF--ARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGK 290 (715)
Q Consensus 215 -~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~-Dg~V~iwdl--~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~ 290 (715)
+..+. ...+..+...+....|++|++.|+..+. ++...||.+ .+++... +..........+|++||++|+..+.
T Consensus 270 d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~-lt~~g~~~~~~~~SpDG~~Ia~~s~ 347 (427)
T PRK02889 270 NADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQR-VTFTGSYNTSPRISPDGKLLAYISR 347 (427)
T ss_pred ECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEE-EecCCCCcCceEECCCCCEEEEEEc
Confidence 44444 3344445555677899999998887664 455566654 4443322 2222334456899999999988776
Q ss_pred CC---cEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCC---eEEEEECCCCeEEEEeecCCCCeEEEEEcc
Q 005096 291 DS---LVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQ---IIKLYDIRAMKELESFRGHRKDVTALAWHP 364 (715)
Q Consensus 291 Dg---~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg---~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp 364 (715)
++ .|.+||+.+++... +.. ......++|++|++.|+.++.++ .+.+.|+ +++....+..+.+.+...+|+|
T Consensus 348 ~~g~~~I~v~d~~~g~~~~-lt~-~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~g~~~~p~wsp 424 (427)
T PRK02889 348 VGGAFKLYVQDLATGQVTA-LTD-TTRDESPSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRLSVQGGDVREPSWGP 424 (427)
T ss_pred cCCcEEEEEEECCCCCeEE-ccC-CCCccCceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEeecCCCCCCCCccCC
Confidence 54 59999998876543 332 23457889999999998877544 3666666 4666666666677788888876
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.4e-13 Score=153.66 Aligned_cols=219 Identities=14% Similarity=0.144 Sum_probs=156.2
Q ss_pred cCCCCccEEEEEEcCCCCEEEEEeCC---CeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEE-EEeCCC--cEEEE
Q 005096 140 LNKNRCSINRVLWTPTGRRLITGSQS---GEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMV-SGDDGG--AIKYW 213 (715)
Q Consensus 140 l~~H~~~I~~l~~spdg~~Latgs~d---g~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~-tgs~dg--~I~iw 213 (715)
+..+...|.+.+|+|||+.|++++.+ ..|++||+.+++... +....+...+++|++|++.|+ +.+.+| .|++|
T Consensus 199 lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~ 277 (433)
T PRK04922 199 ILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVM 277 (433)
T ss_pred eecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCEEEEEEeCCCCceEEEE
Confidence 44567789999999999999988743 469999998876543 334455566889999998775 445555 59999
Q ss_pred eCCCCceeeeecCCCCCeEEEEEecCCCEEEEEEC-CCc--EEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeC
Q 005096 214 QNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSD-DTT--VKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGK 290 (715)
Q Consensus 214 d~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~-Dg~--V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~ 290 (715)
|+.+++... +..+.......+|++|++.|+.++. ++. |+++|+.+++... +.........++|++||++|+..+.
T Consensus 278 d~~~g~~~~-lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt~~g~~~~~~~~SpDG~~Ia~~~~ 355 (433)
T PRK04922 278 DLGSRQLTR-LTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-LTFQGNYNARASVSPDGKKIAMVHG 355 (433)
T ss_pred ECCCCCeEE-CccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-eecCCCCccCEEECCCCCEEEEEEC
Confidence 998877543 4444555677899999999887764 444 7777776665433 2223344557899999999887754
Q ss_pred CC---cEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECC---CeEEEEECCCCeEEEEeecCCCCeEEEEEcc
Q 005096 291 DS---LVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKD---QIIKLYDIRAMKELESFRGHRKDVTALAWHP 364 (715)
Q Consensus 291 Dg---~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~d---g~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp 364 (715)
++ .|.+||+.+++.. .+. +......+.|++||++|+..+.+ +.|.++|+. +.....+..+.+.+...+|+|
T Consensus 356 ~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~-g~~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 356 SGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTD-GRVRQRLVSADGEVREPAWSP 432 (433)
T ss_pred CCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEEcccCCCCCCCCccCC
Confidence 43 5999999877654 343 22345678999999998877653 468888885 455666665666777778875
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.61 E-value=2e-14 Score=140.09 Aligned_cols=238 Identities=19% Similarity=0.219 Sum_probs=165.1
Q ss_pred CCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcC-----CC----CEEEEEeCCCc-EE
Q 005096 142 KNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSH-----ND----NWMVSGDDGGA-IK 211 (715)
Q Consensus 142 ~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~sp-----dg----~~L~tgs~dg~-I~ 211 (715)
.|+..|+.+.-.++ +.|.+-+.|+.+.+|++.....+.+ |.-.++++.|.+ +. ..++.-++... +.
T Consensus 54 ~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~~i~i---~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h 129 (323)
T KOG0322|consen 54 FGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSAFISI---HSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETH 129 (323)
T ss_pred hccceeeceeecCC-cchhhcCCCceEEEEEccCcceEEE---eeeeccccccccceeccCCCcchhheecCCcccchhh
Confidence 35667788887777 4688999999999999887554443 233344444432 11 11111111100 11
Q ss_pred EEeCCCCceeeee----cCCCCCeEEEEEec-CCC--EEEEEECCCcEEEEECCCCeeE----------EEecccCCceE
Q 005096 212 YWQNNMNNVKANK----SAHKESVRDLSFCR-TDL--KFCSCSDDTTVKVWDFARCQEE----------RSLTGHGWDVK 274 (715)
Q Consensus 212 iwd~~~~~~~~~~----~~h~~~I~~l~~sp-d~~--~Las~s~Dg~V~iwdl~~~~~~----------~~l~~~~~~I~ 274 (715)
+-|......+... ....+.+.|..+.. +++ +|++|.++|.|.+||+.++..+ .....|...|.
T Consensus 130 ~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvl 209 (323)
T KOG0322|consen 130 KQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVL 209 (323)
T ss_pred hhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcce
Confidence 1111111111111 12345666666533 232 3667888999999999887443 33456888999
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCC--ce--eEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEe
Q 005096 275 SVDWHPTKSLLVSGGKDSLVKLWDAKSG--RE--LCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESF 350 (715)
Q Consensus 275 si~~spdg~~L~sgs~Dg~I~iwDl~s~--~~--~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~ 350 (715)
++.+.+..+.=++++.+..+..|+++.. .. -..++..+-.|..+.+-+|++.+|+++.|++||||..++...+..+
T Consensus 210 sldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVL 289 (323)
T KOG0322|consen 210 SLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVL 289 (323)
T ss_pred eeeechhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhh
Confidence 9999877677778888889999988643 21 1122223445888999999999999999999999999999999999
Q ss_pred ecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEc
Q 005096 351 RGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLV 384 (715)
Q Consensus 351 ~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~ 384 (715)
+-|...|++++|++ +.+++|+++.|++|.+|++
T Consensus 290 kyHsagvn~vAfsp-d~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 290 KYHSAGVNAVAFSP-DCELMAAASKDARISLWKL 322 (323)
T ss_pred hhhhcceeEEEeCC-CCchhhhccCCceEEeeec
Confidence 99999999999999 7899999999999999986
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.1e-13 Score=150.40 Aligned_cols=234 Identities=14% Similarity=0.111 Sum_probs=161.0
Q ss_pred CeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEe---CCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCE
Q 005096 166 GEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGD---DGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLK 242 (715)
Q Consensus 166 g~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs---~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~ 242 (715)
..|.+||.+..+.. .+..+...+.+.+|++||+.|+..+ .+..|.+|++.+++.... ......+..++|++|++.
T Consensus 179 ~~l~~~d~dg~~~~-~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l-~~~~~~~~~~~~SPDG~~ 256 (429)
T PRK03629 179 YELRVSDYDGYNQF-VVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQV-ASFPRHNGAPAFSPDGSK 256 (429)
T ss_pred eeEEEEcCCCCCCE-EeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEc-cCCCCCcCCeEECCCCCE
Confidence 36999998765543 3445677899999999999887654 235789999988764432 233344567899999998
Q ss_pred EEEE-ECCC--cEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCC-C--cEEEEECCCCceeEEeccCCCceE
Q 005096 243 FCSC-SDDT--TVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKD-S--LVKLWDAKSGRELCSFHGHKNMVL 316 (715)
Q Consensus 243 Las~-s~Dg--~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~D-g--~I~iwDl~s~~~~~~~~~~~~~I~ 316 (715)
|+.. +.++ .|++||+++++... +..+...+...+|+||++.|+.++.+ + .|+++|+.+++. ..+......+.
T Consensus 257 La~~~~~~g~~~I~~~d~~tg~~~~-lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~ 334 (429)
T PRK03629 257 LAFALSKTGSLNLYVMDLASGQIRQ-VTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQ 334 (429)
T ss_pred EEEEEcCCCCcEEEEEECCCCCEEE-ccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe-EEeecCCCCcc
Confidence 8765 4444 59999998876544 44445567899999999988877654 3 455557776654 33333444567
Q ss_pred EEEEcCCCCEEEEEECC---CeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCc---EEEEEcCCCCce
Q 005096 317 CVKWNQNGNWVLTASKD---QIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGS---IFHWLVGHETPQ 390 (715)
Q Consensus 317 sl~~spdg~~Lasgs~d---g~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~---I~iwd~~~~~~~ 390 (715)
+.+|++||++|+..+.+ ..|.+||+.+++.. .+.. ........|++ ++++|+.++.++. +.+++++... .
T Consensus 335 ~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~-~~~~~~p~~Sp-DG~~i~~~s~~~~~~~l~~~~~~G~~-~ 410 (429)
T PRK03629 335 DADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTD-TFLDETPSIAP-NGTMVIYSSSQGMGSVLNLVSTDGRF-K 410 (429)
T ss_pred CEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCC-CCCCCCceECC-CCCEEEEEEcCCCceEEEEEECCCCC-e
Confidence 88999999999887644 35889999887643 3332 22345678999 7777777776664 5666663332 2
Q ss_pred EEEeeccCCCEEEEEEcC
Q 005096 391 VEIHNVHDNTVWDLAWHP 408 (715)
Q Consensus 391 ~~~~~~h~~~V~~l~~sp 408 (715)
..+..|.+.+...+|+|
T Consensus 411 -~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 411 -ARLPATDGQVKFPAWSP 427 (429)
T ss_pred -EECccCCCCcCCcccCC
Confidence 33345777888899986
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.1e-13 Score=150.99 Aligned_cols=233 Identities=12% Similarity=0.067 Sum_probs=160.3
Q ss_pred CeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeC---CCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCE
Q 005096 166 GEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDD---GGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLK 242 (715)
Q Consensus 166 g~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~---dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~ 242 (715)
..|++||.+.. ..+.+..+...+.+.+|++||+.|+..+. +..|.+||+.+++.. .+..+...+.+.+|++|++.
T Consensus 182 ~~l~~~d~dg~-~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~ 259 (435)
T PRK05137 182 KRLAIMDQDGA-NVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRK 259 (435)
T ss_pred eEEEEECCCCC-CcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCE
Confidence 37889998544 44566678889999999999998877653 468999999887654 33445667788999999988
Q ss_pred EE-EEECCCc--EEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeC-CC--cEEEEECCCCceeEEeccCCCceE
Q 005096 243 FC-SCSDDTT--VKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGK-DS--LVKLWDAKSGRELCSFHGHKNMVL 316 (715)
Q Consensus 243 La-s~s~Dg~--V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~-Dg--~I~iwDl~s~~~~~~~~~~~~~I~ 316 (715)
|+ +.+.++. |++||+++++. ..+..+.....+.+|++|++.|+..+. ++ .|++||+.+++.. .+......+.
T Consensus 260 la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~-~lt~~~~~~~ 337 (435)
T PRK05137 260 VVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR-RISFGGGRYS 337 (435)
T ss_pred EEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE-EeecCCCccc
Confidence 76 4455554 78889887654 445556566778999999998887764 33 6888898766543 3433455577
Q ss_pred EEEEcCCCCEEEEEECC---CeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeC-CC-----cEEEEEcCCC
Q 005096 317 CVKWNQNGNWVLTASKD---QIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSL-DG-----SIFHWLVGHE 387 (715)
Q Consensus 317 sl~~spdg~~Lasgs~d---g~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~-DG-----~I~iwd~~~~ 387 (715)
...|++||++|+..+.+ ..|.+||+.++.. ..+. ....+..+.|+| +++.|+..+. .+ .|+++|++..
T Consensus 338 ~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt-~~~~~~~p~~sp-DG~~i~~~~~~~~~~~~~~L~~~dl~g~ 414 (435)
T PRK05137 338 TPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILT-SGFLVEGPTWAP-NGRVIMFFRQTPGSGGAPKLYTVDLTGR 414 (435)
T ss_pred CeEECCCCCEEEEEEcCCCceEEEEEECCCCce-Eecc-CCCCCCCCeECC-CCCEEEEEEccCCCCCcceEEEEECCCC
Confidence 78999999999887644 3688899865443 3333 233577889999 5665554433 32 4677777554
Q ss_pred CceEEEeeccCCCEEEEEEcC
Q 005096 388 TPQVEIHNVHDNTVWDLAWHP 408 (715)
Q Consensus 388 ~~~~~~~~~h~~~V~~l~~sp 408 (715)
.. ..+. ..+.+...+|++
T Consensus 415 ~~--~~l~-~~~~~~~p~Wsp 432 (435)
T PRK05137 415 NE--REVP-TPGDASDPAWSP 432 (435)
T ss_pred ce--EEcc-CCCCccCcccCC
Confidence 33 2222 234566677765
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1e-13 Score=139.53 Aligned_cols=274 Identities=18% Similarity=0.338 Sum_probs=184.7
Q ss_pred CCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc-----eEEEEeccC------------CCEEEEEEcCCC--CEEEE
Q 005096 143 NRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFN-----FEMILQAHD------------HAIRSMVWSHND--NWMVS 203 (715)
Q Consensus 143 H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~-----~~~~l~~h~------------~~V~~l~~spdg--~~L~t 203 (715)
..+-|.+|.|..+|.+||||+.+|.|.++.-+... ....+..|+ ..|..+.|..++ ..++.
T Consensus 24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLl 103 (433)
T KOG1354|consen 24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL 103 (433)
T ss_pred hhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence 34568999999999999999999999999644322 333444443 468889998876 45677
Q ss_pred EeCCCcEEEEeCCCCceeee-----ecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEe-cccCCceEEEE
Q 005096 204 GDDGGAIKYWQNNMNNVKAN-----KSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSL-TGHGWDVKSVD 277 (715)
Q Consensus 204 gs~dg~I~iwd~~~~~~~~~-----~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l-~~~~~~I~si~ 277 (715)
.+.|.+|++|.+........ .......|..+..- +.+..|-.|. ..+.+.+ .+|..-|++|.
T Consensus 104 stNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p------~~~~~~~~ve------a~prRv~aNaHtyhiNSIS 171 (433)
T KOG1354|consen 104 STNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLP------VEGRHDLEVE------ASPRRVYANAHTYHINSIS 171 (433)
T ss_pred ecCCcceeeeeeeccccccccccccccCCCCccceeece------eeccccceee------eeeeeeccccceeEeeeee
Confidence 88899999998765433221 01111222222211 1111111000 0111222 35778899999
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCC-ce--eEEeccC-----CCceEEEEEcC-CCCEEEEEECCCeEEEEECCCCeEEE
Q 005096 278 WHPTKSLLVSGGKDSLVKLWDAKSG-RE--LCSFHGH-----KNMVLCVKWNQ-NGNWVLTASKDQIIKLYDIRAMKELE 348 (715)
Q Consensus 278 ~spdg~~L~sgs~Dg~I~iwDl~s~-~~--~~~~~~~-----~~~I~sl~~sp-dg~~Lasgs~dg~I~iwDl~t~~~~~ 348 (715)
++.|...++++ +|=.|.+|+++-. .. +..++.+ ..-|++..|+| ..++++..+..|+|+|.|+|......
T Consensus 172 ~NsD~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd 250 (433)
T KOG1354|consen 172 VNSDKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCD 250 (433)
T ss_pred ecCccceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhc
Confidence 99999988876 5678999998742 22 2223322 34589999999 56888899999999999998533211
Q ss_pred ----E------------eecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCC------------C
Q 005096 349 ----S------------FRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDN------------T 400 (715)
Q Consensus 349 ----~------------~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~------------~ 400 (715)
. |..--..|..+.|+. ++++|++-+. -+|++||++.....+.....|.. .
T Consensus 251 ~hsKlfEepedp~~rsffseiIsSISDvKFs~-sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~ 328 (433)
T KOG1354|consen 251 AHSKLFEEPEDPSSRSFFSEIISSISDVKFSH-SGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDA 328 (433)
T ss_pred chhhhhccccCCcchhhHHHHhhhhhceEEcc-CCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccc
Confidence 1 122235688999998 8899987654 48999999877776666555532 2
Q ss_pred ---EEEEEEcCCCCEEEEEECCCeEEEEecCCCC
Q 005096 401 ---VWDLAWHPIGYLLCSGSNDHTTKFWCRNRPG 431 (715)
Q Consensus 401 ---V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~ 431 (715)
-..++|+.++.+++||+..+.+++|++.+..
T Consensus 329 IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 329 IFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred hhheeEEEEcCCcceEecccccceEEEecCCCCc
Confidence 2467899999999999999999999965443
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.7e-13 Score=138.88 Aligned_cols=234 Identities=16% Similarity=0.275 Sum_probs=168.0
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCC-CEEEEEECCCcEEEEECCCCee--
Q 005096 186 DHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTD-LKFCSCSDDTTVKVWDFARCQE-- 262 (715)
Q Consensus 186 ~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~-~~Las~s~Dg~V~iwdl~~~~~-- 262 (715)
+..+..++|++.-..++++..|-.|++||-+..............|+|++|-|.+ +.|++++..| |.||.......
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~ksst~pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~ 176 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSSTCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNAN 176 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCCCCCceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCcccccc
Confidence 3457788999877778899999999999987754444445566789999999965 5677777665 89998632111
Q ss_pred ------------EEEecccCCceEEEEEcCCCCEEEEEeC-CCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEE
Q 005096 263 ------------ERSLTGHGWDVKSVDWHPTKSLLVSGGK-DSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLT 329 (715)
Q Consensus 263 ------------~~~l~~~~~~I~si~~spdg~~L~sgs~-Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Las 329 (715)
+....+| ..|+++.|.+||..+++++. |..|.|||.+++..+.......+.++-+.||||+.+|++
T Consensus 177 r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfa 255 (445)
T KOG2139|consen 177 RNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFA 255 (445)
T ss_pred cccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEE
Confidence 1111233 57999999999999998875 568999999998877665445677999999999999999
Q ss_pred EECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceE---------EEe------
Q 005096 330 ASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQV---------EIH------ 394 (715)
Q Consensus 330 gs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~---------~~~------ 394 (715)
++-|+..++|...............+.|...+|+|.+..+|++++..-.|+-..+..+.... .+.
T Consensus 256 At~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ 335 (445)
T KOG2139|consen 256 ATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEV 335 (445)
T ss_pred ecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeeccchhh
Confidence 99999999996554444444444555999999999666667777665555443332211110 000
Q ss_pred ---e---ccCCCEEEEEEcCCCCEEEEEECCCe
Q 005096 395 ---N---VHDNTVWDLAWHPIGYLLCSGSNDHT 421 (715)
Q Consensus 395 ---~---~h~~~V~~l~~spdg~~L~sgs~Dg~ 421 (715)
. .-.+.+.+++|.+.|.+|++.-..+.
T Consensus 336 ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~ 368 (445)
T KOG2139|consen 336 TICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQS 368 (445)
T ss_pred hhhcCcccccCccceeeECCCCCEEEEEEcCCc
Confidence 0 01457889999999999999876543
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=5.1e-13 Score=149.23 Aligned_cols=219 Identities=13% Similarity=0.128 Sum_probs=156.5
Q ss_pred ecCCCCccEEEEEEcCCCCEEEEEeC---CCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEE-EEeCCCc--EEE
Q 005096 139 SLNKNRCSINRVLWTPTGRRLITGSQ---SGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMV-SGDDGGA--IKY 212 (715)
Q Consensus 139 ~l~~H~~~I~~l~~spdg~~Latgs~---dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~-tgs~dg~--I~i 212 (715)
.+..|...|.+.+|+|||+.|+..+. +..|++||+.+++.. .+..+.+.+.+.+|++||+.|+ +.+.++. |.+
T Consensus 196 ~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~ 274 (435)
T PRK05137 196 YLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYT 274 (435)
T ss_pred EEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEEEEEEecCCCceEEE
Confidence 45567889999999999999998764 468999999887654 4555667788999999998875 5555555 777
Q ss_pred EeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEEC-CC--cEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEe
Q 005096 213 WQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSD-DT--TVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGG 289 (715)
Q Consensus 213 wd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~-Dg--~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs 289 (715)
||++++.... +..+.......+|++|++.|+..+. ++ .|++||+..++.. .+......+....|+|||+.|+...
T Consensus 275 ~d~~~~~~~~-Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~-~lt~~~~~~~~~~~SpdG~~ia~~~ 352 (435)
T PRK05137 275 MDLRSGTTTR-LTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR-RISFGGGRYSTPVWSPRGDLIAFTK 352 (435)
T ss_pred EECCCCceEE-ccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE-EeecCCCcccCeEECCCCCEEEEEE
Confidence 7888776543 4445556778999999999887764 33 6888898765443 3433455677789999999998876
Q ss_pred CC---CcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECC------CeEEEEECCCCeEEEEeecCCCCeEEE
Q 005096 290 KD---SLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKD------QIIKLYDIRAMKELESFRGHRKDVTAL 360 (715)
Q Consensus 290 ~D---g~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~d------g~I~iwDl~t~~~~~~~~~h~~~V~~l 360 (715)
.+ ..|.+||+.++. ...+.. ...+..+.|++||++|+..+.+ ..|.++|+..++. ..+. ....+...
T Consensus 353 ~~~~~~~i~~~d~~~~~-~~~lt~-~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~-~~~~~~~p 428 (435)
T PRK05137 353 QGGGQFSIGVMKPDGSG-ERILTS-GFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE-REVP-TPGDASDP 428 (435)
T ss_pred cCCCceEEEEEECCCCc-eEeccC-CCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce-EEcc-CCCCccCc
Confidence 53 358888986554 334432 3357789999999998876543 3578888865544 3443 34456677
Q ss_pred EEcc
Q 005096 361 AWHP 364 (715)
Q Consensus 361 ~~sp 364 (715)
+|++
T Consensus 429 ~Wsp 432 (435)
T PRK05137 429 AWSP 432 (435)
T ss_pred ccCC
Confidence 7776
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.56 E-value=6.2e-13 Score=131.67 Aligned_cols=261 Identities=15% Similarity=0.248 Sum_probs=184.1
Q ss_pred CCeEEEEeCCCCceEE---EEeccCCCEEEEEEcC---CCC-EEEEEeCCCcEEEEeCCCCceeeeecCCC------CCe
Q 005096 165 SGEFTLWNGQSFNFEM---ILQAHDHAIRSMVWSH---NDN-WMVSGDDGGAIKYWQNNMNNVKANKSAHK------ESV 231 (715)
Q Consensus 165 dg~I~Iwd~~~~~~~~---~l~~h~~~V~~l~~sp---dg~-~L~tgs~dg~I~iwd~~~~~~~~~~~~h~------~~I 231 (715)
.|++.+|++++.+... ........+..+.|.- ++. .|+.+..+|.|.++..........+.... ...
T Consensus 45 ~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~ 124 (339)
T KOG0280|consen 45 SGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEA 124 (339)
T ss_pred ccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheee
Confidence 4678999887765433 2223345677778863 444 55667788999999876554444443221 124
Q ss_pred EEEEEecCCCEEEEEECCCcEEEEECCCCeeEE--EecccCCceEEEEEcCC-CCEEEEEeCCCcEEEEECCC-CceeEE
Q 005096 232 RDLSFCRTDLKFCSCSDDTTVKVWDFARCQEER--SLTGHGWDVKSVDWHPT-KSLLVSGGKDSLVKLWDAKS-GRELCS 307 (715)
Q Consensus 232 ~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~--~l~~~~~~I~si~~spd-g~~L~sgs~Dg~I~iwDl~s-~~~~~~ 307 (715)
.++.|+..+..++++..+|.+.+.+........ ..+.|...++..+|+.. .+++.+|++|+.+..||+|. ++.+..
T Consensus 125 lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~ 204 (339)
T KOG0280|consen 125 LSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWH 204 (339)
T ss_pred eEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeee
Confidence 577888888889999999999977765554444 77889999999999864 46889999999999999993 444433
Q ss_pred -eccCCCceEEEEEcC-CCCEEEEEECCCeEEEEECCC-CeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEc
Q 005096 308 -FHGHKNMVLCVKWNQ-NGNWVLTASKDQIIKLYDIRA-MKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLV 384 (715)
Q Consensus 308 -~~~~~~~I~sl~~sp-dg~~Lasgs~dg~I~iwDl~t-~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~ 384 (715)
.+.|...|.+|.-++ +..+|++|+.|..|++||.|+ ++.+..-. ..+.|..+.++|.....++.++.-.-.+|.+.
T Consensus 205 n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~-v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~ 283 (339)
T KOG0280|consen 205 NSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK-VGGGVWRIKHHPEIFHRLLAACMHNGAKILDS 283 (339)
T ss_pred cceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCc-cccceEEEEecchhhhHHHHHHHhcCceEEEe
Confidence 456888899998887 678999999999999999995 45554433 44889999999966555554554555667776
Q ss_pred CCCCce----EEEeeccCCCEEEEEEcCCCCEEEEEE-CCCeEE-EEe
Q 005096 385 GHETPQ----VEIHNVHDNTVWDLAWHPIGYLLCSGS-NDHTTK-FWC 426 (715)
Q Consensus 385 ~~~~~~----~~~~~~h~~~V~~l~~spdg~~L~sgs-~Dg~I~-iWd 426 (715)
+.+... ......|.+-+..-.|.....+|+|++ .|..++ +|-
T Consensus 284 ~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl 331 (339)
T KOG0280|consen 284 SDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWL 331 (339)
T ss_pred cccccchheeeeccccccceeeccccccccceeeeeeccccceeeeee
Confidence 554433 345566777777888855556788865 355544 664
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.9e-12 Score=138.28 Aligned_cols=272 Identities=12% Similarity=0.206 Sum_probs=174.9
Q ss_pred CccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEE-----eC-----CCcEEEE
Q 005096 144 RCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSG-----DD-----GGAIKYW 213 (715)
Q Consensus 144 ~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tg-----s~-----dg~I~iw 213 (715)
...++..++|++|++++.+.. ..|+|++..+.+.+.+... ..+.++.|++.+++|.+= .. .-.+.+|
T Consensus 34 ~~~~~v~~~S~~G~lfA~~~~-~~v~i~~~~~~~~~lt~~~--~~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~ 110 (566)
T KOG2315|consen 34 SRPCNVFAYSNNGRLFAYSDN-QVVKVFEIATLKVVLCVEL--KKTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVY 110 (566)
T ss_pred CCcceeEEEcCCCcEEEEEcC-CeEEEEEccCCcEEEEecc--ceeeeeeecccccccccccccccccCCCCCCCceeee
Confidence 445788899999987777665 4699999888764444333 388999999999988752 11 2347799
Q ss_pred eCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceE-------------------
Q 005096 214 QNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVK------------------- 274 (715)
Q Consensus 214 d~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~------------------- 274 (715)
+++++.....+......-+++.|+.|+.+.+ --..+.|.+||+.+.+.+.. .-|...|+
T Consensus 111 ~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~a-rlv~nev~f~~~~~f~~~~~-kl~~~~i~~f~lSpgp~~~~vAvyvPe 188 (566)
T KOG2315|consen 111 NVETGVQRSQIQKKMQNGWVPQFSIDESLAA-RLVSNEVQFYDLGSFKTIQH-KLSVSGITMLSLSPGPEPPFVAVYVPE 188 (566)
T ss_pred eeccceehhheehhhhcCcccccccchhhhh-hhhcceEEEEecCCccceee-eeeccceeeEEecCCCCCceEEEEccC
Confidence 9988544333332222225677776654322 22234566666644222111 01122223
Q ss_pred ---------------------------------EEEEcCCCC-EEEEEe--CC---------CcEEEEECCCCceeEEec
Q 005096 275 ---------------------------------SVDWHPTKS-LLVSGG--KD---------SLVKLWDAKSGRELCSFH 309 (715)
Q Consensus 275 ---------------------------------si~~spdg~-~L~sgs--~D---------g~I~iwDl~s~~~~~~~~ 309 (715)
.+.|+.-+. +|+.++ -| .+++++++....+...+.
T Consensus 189 ~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~ 268 (566)
T KOG2315|consen 189 KKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL 268 (566)
T ss_pred CCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC
Confidence 344554443 222221 12 246666666333333333
Q ss_pred cCCCceEEEEEcCCCCEEEE--EECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeC---CCcEEEEEc
Q 005096 310 GHKNMVLCVKWNQNGNWVLT--ASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSL---DGSIFHWLV 384 (715)
Q Consensus 310 ~~~~~I~sl~~spdg~~Las--gs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~---DG~I~iwd~ 384 (715)
..+.|.++.|+++++-+++ |-+-.++.|||++ ++.+..+ ..+.-+++-|+| .+++|+.++- -|.|-|||+
T Consensus 269 -k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df--~egpRN~~~fnp-~g~ii~lAGFGNL~G~mEvwDv 343 (566)
T KOG2315|consen 269 -KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDF--PEGPRNTAFFNP-HGNIILLAGFGNLPGDMEVWDV 343 (566)
T ss_pred -CCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeC--CCCCccceEECC-CCCEEEEeecCCCCCceEEEec
Confidence 5788999999999976654 5567799999987 6666555 456778899999 7888877764 478999999
Q ss_pred CCCCceEEEeeccCCCEEEEEEcCCCCEEEEEEC------CCeEEEEecC
Q 005096 385 GHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSN------DHTTKFWCRN 428 (715)
Q Consensus 385 ~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~------Dg~I~iWdl~ 428 (715)
.+.+.+..+. ...-+-+.|+|||.+|+|++. |+.++||++.
T Consensus 344 ~n~K~i~~~~---a~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt 390 (566)
T KOG2315|consen 344 PNRKLIAKFK---AANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT 390 (566)
T ss_pred cchhhccccc---cCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEec
Confidence 8855544443 234567899999999999876 7889999984
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.4e-12 Score=138.40 Aligned_cols=268 Identities=11% Similarity=0.083 Sum_probs=175.2
Q ss_pred EEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecC
Q 005096 160 ITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRT 239 (715)
Q Consensus 160 atgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd 239 (715)
++-..+|.|.|.|..+.+.+.++.........++|++|++++++++.||.|.++|+.+.+.+..+... ....++++++|
T Consensus 10 V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G-~~~~~i~~s~D 88 (369)
T PF02239_consen 10 VVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVG-GNPRGIAVSPD 88 (369)
T ss_dssp EEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-S-SEEEEEEE--T
T ss_pred EEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecC-CCcceEEEcCC
Confidence 45567899999999999999999875544455789999999999999999999999999988887654 45688999999
Q ss_pred CCEEEEEE-CCCcEEEEECCCCeeEEEeccc-------CCceEEEEEcCCCCEEEEEeC-CCcEEEEECCCCceeE-Eec
Q 005096 240 DLKFCSCS-DDTTVKVWDFARCQEERSLTGH-------GWDVKSVDWHPTKSLLVSGGK-DSLVKLWDAKSGRELC-SFH 309 (715)
Q Consensus 240 ~~~Las~s-~Dg~V~iwdl~~~~~~~~l~~~-------~~~I~si~~spdg~~L~sgs~-Dg~I~iwDl~s~~~~~-~~~ 309 (715)
|+++++++ .++.|.|+|.++.+.+..+... ...+..|..++....+++.-. .+.|.+.|....+.+. ...
T Consensus 89 G~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i 168 (369)
T PF02239_consen 89 GKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTI 168 (369)
T ss_dssp TTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEE
T ss_pred CCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeee
Confidence 99988765 5899999999999988877532 346778888888886666555 4788888987654432 222
Q ss_pred cCCCceEEEEEcCCCCEEEEE-ECCCeEEEEECCCCeEEEEeec----CCCCeEEE-------EEccC-CCCEEEEEeCC
Q 005096 310 GHKNMVLCVKWNQNGNWVLTA-SKDQIIKLYDIRAMKELESFRG----HRKDVTAL-------AWHPF-HEEYFVSGSLD 376 (715)
Q Consensus 310 ~~~~~I~sl~~spdg~~Lasg-s~dg~I~iwDl~t~~~~~~~~~----h~~~V~~l-------~~sp~-~~~~l~sgs~D 376 (715)
..........|+++++|++++ ..++.|-++|.++++.+..+.. |...+..+ .|... .+...++.-..
T Consensus 169 ~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~ 248 (369)
T PF02239_consen 169 KVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGT 248 (369)
T ss_dssp E--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE-
T ss_pred cccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccC
Confidence 244567889999999988775 4667999999999988776643 22333332 12111 11222122222
Q ss_pred CcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEE----ECCCeEEEEecCCC
Q 005096 377 GSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSG----SNDHTTKFWCRNRP 430 (715)
Q Consensus 377 G~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sg----s~Dg~I~iWdl~~~ 430 (715)
..+.+||....+.+..+.. .... ..+..+|++++|.+. ..++.|.++|.+..
T Consensus 249 ~~v~v~d~~~wkvv~~I~~-~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl 304 (369)
T PF02239_consen 249 DPVSVHDDYAWKVVKTIPT-QGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTL 304 (369)
T ss_dssp -TTT-STTTBTSEEEEEE--SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGT
T ss_pred CccccchhhcCeEEEEEEC-CCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCc
Confidence 3555677766665555554 3444 788889999999998 45689999999765
|
... |
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.55 E-value=4.5e-13 Score=142.73 Aligned_cols=245 Identities=16% Similarity=0.168 Sum_probs=181.9
Q ss_pred cCCCEEEEEEcCCCCEE-EEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeE
Q 005096 185 HDHAIRSMVWSHNDNWM-VSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEE 263 (715)
Q Consensus 185 h~~~V~~l~~spdg~~L-~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~ 263 (715)
+....+.|..++||+|| ++|...-.|++||+....+..........|.-.-++.|-..++.-..|.+|-+..-......
T Consensus 50 ~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy~ 129 (703)
T KOG2321|consen 50 MPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHYR 129 (703)
T ss_pred CccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeeee
Confidence 56677899999999987 67778889999999887776665555556666666666667777777877766543221111
Q ss_pred EEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCC
Q 005096 264 RSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRA 343 (715)
Q Consensus 264 ~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t 343 (715)
..+. ..-.+++++.-.--|++++....|+-++++.|+-+..+......+++|..++...+|++|+.+|.|..||.++
T Consensus 130 ~RIP---~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ 206 (703)
T KOG2321|consen 130 TRIP---KFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRD 206 (703)
T ss_pred eecC---cCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchh
Confidence 1111 2234555554333344555557799999999999999987888999999999889999999999999999998
Q ss_pred CeEEEEeecCC-----------CCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCC--C
Q 005096 344 MKELESFRGHR-----------KDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPI--G 410 (715)
Q Consensus 344 ~~~~~~~~~h~-----------~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd--g 410 (715)
...+.++.... ..|+++.|+. ++-.+++|+.+|.|.|||++....+........-.|..+.|... .
T Consensus 207 ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d-~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q 285 (703)
T KOG2321|consen 207 KSRVGTLDAASSVNSHPGGDAAPSVTALKFRD-DGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQ 285 (703)
T ss_pred hhhheeeecccccCCCccccccCcceEEEecC-CceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCC
Confidence 77766654322 2499999996 68899999999999999999998877766666678999999765 3
Q ss_pred CEEEEEECCCeEEEEecCCCCCcc
Q 005096 411 YLLCSGSNDHTTKFWCRNRPGDTA 434 (715)
Q Consensus 411 ~~L~sgs~Dg~I~iWdl~~~~~~~ 434 (715)
..|++. +...++|||-.......
T Consensus 286 ~~v~S~-Dk~~~kiWd~~~Gk~~a 308 (703)
T KOG2321|consen 286 NKVVSM-DKRILKIWDECTGKPMA 308 (703)
T ss_pred ceEEec-chHHhhhcccccCCcee
Confidence 445544 46789999986655433
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.54 E-value=6.3e-11 Score=128.21 Aligned_cols=272 Identities=11% Similarity=0.129 Sum_probs=179.5
Q ss_pred EEEEeCC----CeEEEEeC--CCCceEEEEe-ccCCCEEEEEEcCCCCEEEEEeC----CCcEEEEeCCCC--c--eeee
Q 005096 159 LITGSQS----GEFTLWNG--QSFNFEMILQ-AHDHAIRSMVWSHNDNWMVSGDD----GGAIKYWQNNMN--N--VKAN 223 (715)
Q Consensus 159 Latgs~d----g~I~Iwd~--~~~~~~~~l~-~h~~~V~~l~~spdg~~L~tgs~----dg~I~iwd~~~~--~--~~~~ 223 (715)
+++|+.+ +.|++|++ +++++...-. ........+++++++++|+++.+ ++.|..|++... . .+..
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~ 81 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNS 81 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeee
Confidence 5566665 67888877 4444433221 23456778999999999988876 578999987764 2 2233
Q ss_pred ecCCCCCeEEEEEecCCCEEEEEEC-CCcEEEEECCC-CeeEEE---ec----------ccCCceEEEEEcCCCCEEEEE
Q 005096 224 KSAHKESVRDLSFCRTDLKFCSCSD-DTTVKVWDFAR-CQEERS---LT----------GHGWDVKSVDWHPTKSLLVSG 288 (715)
Q Consensus 224 ~~~h~~~I~~l~~spd~~~Las~s~-Dg~V~iwdl~~-~~~~~~---l~----------~~~~~I~si~~spdg~~L~sg 288 (715)
..........+++++++++|+++.. +|+|.++++.. +..... +. .......++.|+||+++|++.
T Consensus 82 ~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~ 161 (345)
T PF10282_consen 82 VPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVP 161 (345)
T ss_dssp EEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEE
T ss_pred eccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEE
Confidence 3334556678999999999998875 89999999976 333222 11 123457799999999988876
Q ss_pred eC-CCcEEEEECCCCc--ee--EEe-ccCCCceEEEEEcCCCCEEEEEE-CCCeEEEEECC--CCe--EEEEeecC----
Q 005096 289 GK-DSLVKLWDAKSGR--EL--CSF-HGHKNMVLCVKWNQNGNWVLTAS-KDQIIKLYDIR--AMK--ELESFRGH---- 353 (715)
Q Consensus 289 s~-Dg~I~iwDl~s~~--~~--~~~-~~~~~~I~sl~~spdg~~Lasgs-~dg~I~iwDl~--t~~--~~~~~~~h---- 353 (715)
.. ...|++|+++... .. ..+ ......-+.++|+++++++++.+ .++.|.+|++. +++ .+..+...
T Consensus 162 dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~ 241 (345)
T PF10282_consen 162 DLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGF 241 (345)
T ss_dssp ETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTS
T ss_pred ecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccc
Confidence 53 4579999987654 21 122 23445678999999999887766 56789999988 443 23333221
Q ss_pred --CCCeEEEEEccCCCCEE-EEEeCCCcEEEEEcCCC-CceEE--EeeccCCCEEEEEEcCCCCEEEEEE-CCCeEEEEe
Q 005096 354 --RKDVTALAWHPFHEEYF-VSGSLDGSIFHWLVGHE-TPQVE--IHNVHDNTVWDLAWHPIGYLLCSGS-NDHTTKFWC 426 (715)
Q Consensus 354 --~~~V~~l~~sp~~~~~l-~sgs~DG~I~iwd~~~~-~~~~~--~~~~h~~~V~~l~~spdg~~L~sgs-~Dg~I~iWd 426 (715)
......|++++ ++++| ++...++.|.+|+++.. ..+.. .........+.++++++|++|+++. .++.|.+|+
T Consensus 242 ~~~~~~~~i~isp-dg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~ 320 (345)
T PF10282_consen 242 TGENAPAEIAISP-DGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFD 320 (345)
T ss_dssp CSSSSEEEEEE-T-TSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEE
T ss_pred cccCCceeEEEec-CCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEE
Confidence 12578999999 55555 45556778999999543 22222 2222244589999999999998877 577999999
Q ss_pred cCCCC
Q 005096 427 RNRPG 431 (715)
Q Consensus 427 l~~~~ 431 (715)
++...
T Consensus 321 ~d~~t 325 (345)
T PF10282_consen 321 IDPDT 325 (345)
T ss_dssp EETTT
T ss_pred EeCCC
Confidence 97543
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.53 E-value=7.2e-13 Score=135.86 Aligned_cols=240 Identities=14% Similarity=0.218 Sum_probs=184.1
Q ss_pred CCCEEEEEEcCCCC--EEEEEeCCCcEEEEeCCCCceeeee------cCCCCCeEEEEEecCCCEEEEEECCCcEEEEEC
Q 005096 186 DHAIRSMVWSHNDN--WMVSGDDGGAIKYWQNNMNNVKANK------SAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDF 257 (715)
Q Consensus 186 ~~~V~~l~~spdg~--~L~tgs~dg~I~iwd~~~~~~~~~~------~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl 257 (715)
...|..++|.-+++ .|+.++.|..+.++.+....+...+ ......|..++.. +..|++|..+|.+.+|.+
T Consensus 55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~~~ 132 (412)
T KOG3881|consen 55 LDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA--DGTLITCVSSGNLQVRHD 132 (412)
T ss_pred hhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc--CCEEEEEecCCcEEEEec
Confidence 45677888876553 4444446667777766665443332 2344556666553 457888999999999998
Q ss_pred CCCe----eEEEecccCCceEEEEEcCCCC-EEEEEeCC--CcEEEEECCCCceeEEeccC---------CCceEEEEEc
Q 005096 258 ARCQ----EERSLTGHGWDVKSVDWHPTKS-LLVSGGKD--SLVKLWDAKSGRELCSFHGH---------KNMVLCVKWN 321 (715)
Q Consensus 258 ~~~~----~~~~l~~~~~~I~si~~spdg~-~L~sgs~D--g~I~iwDl~s~~~~~~~~~~---------~~~I~sl~~s 321 (715)
+.+. .+..+. ....+..+.-++... ++++|+.. ..++|||+...+.+..-+.- .-+++++.|.
T Consensus 133 k~~d~hss~l~~la-~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl 211 (412)
T KOG3881|consen 133 KSGDLHSSKLIKLA-TGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFL 211 (412)
T ss_pred cCCccccccceeee-cCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceec
Confidence 7432 233333 234566666665444 56668888 88999999988666554321 2367889998
Q ss_pred CC--CCEEEEEECCCeEEEEECCCCe-EEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccC
Q 005096 322 QN--GNWVLTASKDQIIKLYDIRAMK-ELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHD 398 (715)
Q Consensus 322 pd--g~~Lasgs~dg~I~iwDl~t~~-~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~ 398 (715)
+. ...|++++.-+.|++||.+.++ .+..|...+..|+++...+ ++++|++|...|.+..||++........+.+-.
T Consensus 212 ~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p-~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~t 290 (412)
T KOG3881|consen 212 EGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTP-SGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGIT 290 (412)
T ss_pred CCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecC-CCcEEEEecccchhheecccCceeeccccCCcc
Confidence 87 7899999999999999999764 5788888899999999999 899999999999999999999988888788889
Q ss_pred CCEEEEEEcCCCCEEEEEECCCeEEEEecCC
Q 005096 399 NTVWDLAWHPIGYLLCSGSNDHTTKFWCRNR 429 (715)
Q Consensus 399 ~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~ 429 (715)
+.|++|..++...+|++++.|..|||+|+++
T Consensus 291 Gsirsih~hp~~~~las~GLDRyvRIhD~kt 321 (412)
T KOG3881|consen 291 GSIRSIHCHPTHPVLASCGLDRYVRIHDIKT 321 (412)
T ss_pred CCcceEEEcCCCceEEeeccceeEEEeeccc
Confidence 9999999999999999999999999999976
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.9e-12 Score=141.32 Aligned_cols=204 Identities=13% Similarity=0.119 Sum_probs=141.6
Q ss_pred CeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCC---CcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCE
Q 005096 166 GEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDG---GAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLK 242 (715)
Q Consensus 166 g~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~d---g~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~ 242 (715)
..|.++|....+ .+.+..+...+.+.+|++|+++|+.+..+ ..|++||+.+++.... ..+...+.+++|++|++.
T Consensus 170 ~~l~~~d~~g~~-~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~-~~~~~~~~~~~~spDg~~ 247 (417)
T TIGR02800 170 YELQVADYDGAN-PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKV-ASFPGMNGAPAFSPDGSK 247 (417)
T ss_pred ceEEEEcCCCCC-CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEe-ecCCCCccceEECCCCCE
Confidence 468888876444 44455567778999999999999876643 4799999988765433 334556677999999988
Q ss_pred EEEE-ECCC--cEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCC-C--cEEEEECCCCceeEEeccCCCceE
Q 005096 243 FCSC-SDDT--TVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKD-S--LVKLWDAKSGRELCSFHGHKNMVL 316 (715)
Q Consensus 243 Las~-s~Dg--~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~D-g--~I~iwDl~s~~~~~~~~~~~~~I~ 316 (715)
|+.. +.++ .|++||+.++.. ..+..+.......+|++|++.|+.++.. + .|++||+++++.. .+..+...+.
T Consensus 248 l~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~~~~~~ 325 (417)
T TIGR02800 248 LAVSLSKDGNPDIYVMDLDGKQL-TRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFRGGYNA 325 (417)
T ss_pred EEEEECCCCCccEEEEECCCCCE-EECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCCCcc
Confidence 7654 4443 589999987654 3344444455678999999988776543 3 5888898876643 3443456677
Q ss_pred EEEEcCCCCEEEEEECCC---eEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCC
Q 005096 317 CVKWNQNGNWVLTASKDQ---IIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLD 376 (715)
Q Consensus 317 sl~~spdg~~Lasgs~dg---~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~D 376 (715)
.+.|++++++|+.++.++ .|.+||+.++... .+.. ........|++ +++.|+..+.+
T Consensus 326 ~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~-~~~~~~p~~sp-dg~~l~~~~~~ 385 (417)
T TIGR02800 326 SPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER-VLTD-TGLDESPSFAP-NGRMILYATTR 385 (417)
T ss_pred CeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE-EccC-CCCCCCceECC-CCCEEEEEEeC
Confidence 889999999999988776 8999999875443 2222 22345668999 55555544443
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.53 E-value=6.1e-13 Score=134.17 Aligned_cols=246 Identities=16% Similarity=0.287 Sum_probs=183.5
Q ss_pred EEecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCceEEEEe-ccCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 005096 137 HTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWN-GQSFNFEMILQ-AHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQ 214 (715)
Q Consensus 137 ~~~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd-~~~~~~~~~l~-~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd 214 (715)
...++||.+.|++...-+...-+++.+.|.+++||- .+.++.-..+. .....++++.+..+...|++|-.+|++.-+.
T Consensus 17 l~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs 96 (404)
T KOG1409|consen 17 LSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFA 96 (404)
T ss_pred hhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEE
Confidence 446789999999999999888899999999999995 44444433332 2357789999999999999999999999886
Q ss_pred CC----CCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeC
Q 005096 215 NN----MNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGK 290 (715)
Q Consensus 215 ~~----~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~ 290 (715)
+. .....+....|...|..+.|+...+.+++.+.|..+.---.+.+..+..+. .....+++.+.-. +...|..
T Consensus 97 ~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~-~~~~~t~~~~d~~--~~fvGd~ 173 (404)
T KOG1409|consen 97 LSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYN-FETPASALQFDAL--YAFVGDH 173 (404)
T ss_pred hhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceE-eeccCCCCceeeE--EEEeccc
Confidence 54 334555667899999999999888999999998766543334443332221 0111112222211 4555666
Q ss_pred CCcEEEEECC--CCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeE-EEEeecCCCCeEEEEEccCCC
Q 005096 291 DSLVKLWDAK--SGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKE-LESFRGHRKDVTALAWHPFHE 367 (715)
Q Consensus 291 Dg~I~iwDl~--s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~-~~~~~~h~~~V~~l~~sp~~~ 367 (715)
.|.|.+..+. .-..+.++.+|.+.+++++|.+....|++|..|..|.+||+--.+- ..++.+|...|..+.... .-
T Consensus 174 ~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~-~t 252 (404)
T KOG1409|consen 174 SGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQ-HT 252 (404)
T ss_pred ccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhh-hh
Confidence 6666665443 4456788999999999999999999999999999999999975443 456678889998888776 67
Q ss_pred CEEEEEeCCCcEEEEEcCC
Q 005096 368 EYFVSGSLDGSIFHWLVGH 386 (715)
Q Consensus 368 ~~l~sgs~DG~I~iwd~~~ 386 (715)
..+++++.||.|.+|+.+.
T Consensus 253 ~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 253 RQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred eeeeeccCCCeEEEEeccc
Confidence 8899999999999999864
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.52 E-value=4.1e-13 Score=152.30 Aligned_cols=275 Identities=15% Similarity=0.184 Sum_probs=191.2
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccC-CCEEEE--EEcCCCCEEEEEeCCCcEEEEeCCCCceee
Q 005096 146 SINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHD-HAIRSM--VWSHNDNWMVSGDDGGAIKYWQNNMNNVKA 222 (715)
Q Consensus 146 ~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~-~~V~~l--~~spdg~~L~tgs~dg~I~iwd~~~~~~~~ 222 (715)
.+++..+-. ++|++|.. -.|.+||+.++..+..+.... ..+... ...-.+.+++++..-+.+.+-+.+..
T Consensus 9 ~l~~~~~~~--~~llag~g-p~i~~yd~~s~~li~~~~~~~~~~~H~~e~~~~l~~~~~v~~~~~~~v~~~~~~~~---- 81 (967)
T KOG0974|consen 9 PLNLPQLVS--DYLLAGSG-PEILVYDLSSGCLIRHLIQSKILEVHRGEGKVKLLSGKIVTCAKSDEVYVKEASNQ---- 81 (967)
T ss_pred cccchhhcc--ceeeecCC-CceEEeeCCchhHhhhhhhhcccccccccccceeccceEEEEEeecceeecchhhh----
Confidence 344444443 46665544 359999998876654433211 111100 00012345555554444433222211
Q ss_pred eecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCc----eEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005096 223 NKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWD----VKSVDWHPTKSLLVSGGKDSLVKLWD 298 (715)
Q Consensus 223 ~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~----I~si~~spdg~~L~sgs~Dg~I~iwD 298 (715)
.+....+.|....+..+++.++.++.++.+.+||.........+...... ..-+-++.+.-++++|+.-+.|.+|+
T Consensus 82 ~~~~~s~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~ 161 (967)
T KOG0974|consen 82 IIERFSDWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWK 161 (967)
T ss_pred hhhhccccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEe
Confidence 11223344555666668888999999999999999877666655433221 11223345555889999999999999
Q ss_pred CCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEE-EeecCCCCeEEEEEccCCCCEEEEEeCCC
Q 005096 299 AKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELE-SFRGHRKDVTALAWHPFHEEYFVSGSLDG 377 (715)
Q Consensus 299 l~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~-~~~~h~~~V~~l~~sp~~~~~l~sgs~DG 377 (715)
....+.-..+.+|.+.|.++.|+.||+++++.++|.++++|++++.+.+. ..-+|...|..++|.+ + .|++++.|-
T Consensus 162 ~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~-n--~i~t~gedc 238 (967)
T KOG0974|consen 162 PHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLP-N--RIITVGEDC 238 (967)
T ss_pred ccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEecc-c--eeEEeccce
Confidence 88444444688999999999999999999999999999999999988876 5668999999999987 3 999999999
Q ss_pred cEEEEEcCCCCceEEEeecc-CCCEEEEEEcCCCCEEEEEECCCeEEEEecCCCCC
Q 005096 378 SIFHWLVGHETPQVEIHNVH-DNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGD 432 (715)
Q Consensus 378 ~I~iwd~~~~~~~~~~~~~h-~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~~ 432 (715)
+.++|+.+..... .+..| ...|+.++...+...++|++.|+.+++|++...+.
T Consensus 239 tcrvW~~~~~~l~--~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r~~ 292 (967)
T KOG0974|consen 239 TCRVWGVNGTQLE--VYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGRGL 292 (967)
T ss_pred EEEEEecccceeh--hhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhcccc
Confidence 9999976544332 44444 45799999999999999999999999999865443
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=7.8e-12 Score=139.59 Aligned_cols=233 Identities=12% Similarity=0.058 Sum_probs=151.8
Q ss_pred eEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCC---CcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEE
Q 005096 167 EFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDG---GAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKF 243 (715)
Q Consensus 167 ~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~d---g~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~L 243 (715)
.|.++|.+..+. +.+..+...+...+|++|++.|+..+.+ ..|.+||+.+++.... ......+...+|++|++.|
T Consensus 180 ~l~~~d~~g~~~-~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l-~~~~g~~~~~~~SpDG~~l 257 (430)
T PRK00178 180 TLQRSDYDGARA-VTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQI-TNFEGLNGAPAWSPDGSKL 257 (430)
T ss_pred EEEEECCCCCCc-eEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEc-cCCCCCcCCeEECCCCCEE
Confidence 477888875544 4555667788999999999998765533 3688999988765443 2334455678999999988
Q ss_pred EE-EECCC--cEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeC-CC--cEEEEECCCCceeEEeccCCCceEE
Q 005096 244 CS-CSDDT--TVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGK-DS--LVKLWDAKSGRELCSFHGHKNMVLC 317 (715)
Q Consensus 244 as-~s~Dg--~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~-Dg--~I~iwDl~s~~~~~~~~~~~~~I~s 317 (715)
+. .+.++ .|++||+.+++.. .+..+........|++|++.|+..+. ++ .|+++|+.+++...... .......
T Consensus 258 a~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~-~~~~~~~ 335 (430)
T PRK00178 258 AFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTF-VGNYNAR 335 (430)
T ss_pred EEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec-CCCCccc
Confidence 74 44454 5888899876543 44445556677899999998776654 33 57788888776433222 2233456
Q ss_pred EEEcCCCCEEEEEECC-C--eEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEE-EEeCCCc--EEEEEcCCCCceE
Q 005096 318 VKWNQNGNWVLTASKD-Q--IIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFV-SGSLDGS--IFHWLVGHETPQV 391 (715)
Q Consensus 318 l~~spdg~~Lasgs~d-g--~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~-sgs~DG~--I~iwd~~~~~~~~ 391 (715)
..|++|+++|+..+.+ + .|.+||+.+++... +.. ........|++ ++++|+ +...++. |.+++++.. ..
T Consensus 336 ~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~-lt~-~~~~~~p~~sp-dg~~i~~~~~~~g~~~l~~~~~~g~--~~ 410 (430)
T PRK00178 336 PRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRI-LTD-TSLDESPSVAP-NGTMLIYATRQQGRGVLMLVSINGR--VR 410 (430)
T ss_pred eEECCCCCEEEEEEccCCceEEEEEECCCCCEEE-ccC-CCCCCCceECC-CCCEEEEEEecCCceEEEEEECCCC--ce
Confidence 7899999999887653 2 58889998876432 222 22233568999 555555 4444444 555555332 22
Q ss_pred EEeeccCCCEEEEEEcC
Q 005096 392 EIHNVHDNTVWDLAWHP 408 (715)
Q Consensus 392 ~~~~~h~~~V~~l~~sp 408 (715)
..+..+.+.+...+|++
T Consensus 411 ~~l~~~~g~~~~p~ws~ 427 (430)
T PRK00178 411 LPLPTAQGEVREPSWSP 427 (430)
T ss_pred EECcCCCCCcCCCccCC
Confidence 22323455667777765
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.2e-10 Score=125.95 Aligned_cols=261 Identities=11% Similarity=0.147 Sum_probs=172.3
Q ss_pred ccEEEEEEcCCCCEEEEEeC----CCeEEEEeCCCC--ce--EEEEeccCCCEEEEEEcCCCCEEEEEe-CCCcEEEEeC
Q 005096 145 CSINRVLWTPTGRRLITGSQ----SGEFTLWNGQSF--NF--EMILQAHDHAIRSMVWSHNDNWMVSGD-DGGAIKYWQN 215 (715)
Q Consensus 145 ~~I~~l~~spdg~~Latgs~----dg~I~Iwd~~~~--~~--~~~l~~h~~~V~~l~~spdg~~L~tgs-~dg~I~iwd~ 215 (715)
..-..|++++++++|+++.+ ++.|..|++... ++ +............+++++++++|+++. .+|.|.++++
T Consensus 37 ~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l 116 (345)
T PF10282_consen 37 ENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPL 116 (345)
T ss_dssp SSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred CCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEc
Confidence 34566889999999999877 468988887653 33 333333445667899999999998876 4899999999
Q ss_pred CCC-ceeee---e----------cCCCCCeEEEEEecCCCEEEEEEC-CCcEEEEECCCCe--eE--EEe-cccCCceEE
Q 005096 216 NMN-NVKAN---K----------SAHKESVRDLSFCRTDLKFCSCSD-DTTVKVWDFARCQ--EE--RSL-TGHGWDVKS 275 (715)
Q Consensus 216 ~~~-~~~~~---~----------~~h~~~I~~l~~spd~~~Las~s~-Dg~V~iwdl~~~~--~~--~~l-~~~~~~I~s 275 (715)
+.. .+... + ........++.+++|+++|++... ...|++|+++... .. ..+ ......-+.
T Consensus 117 ~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh 196 (345)
T PF10282_consen 117 DDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRH 196 (345)
T ss_dssp CTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEE
T ss_pred cCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcE
Confidence 873 33222 1 112345778999999999887654 4579999997654 21 222 234566789
Q ss_pred EEEcCCCCEEEEEe-CCCcEEEEECC--CCce--eEEecc------CCCceEEEEEcCCCCEEEEEE-CCCeEEEEECCC
Q 005096 276 VDWHPTKSLLVSGG-KDSLVKLWDAK--SGRE--LCSFHG------HKNMVLCVKWNQNGNWVLTAS-KDQIIKLYDIRA 343 (715)
Q Consensus 276 i~~spdg~~L~sgs-~Dg~I~iwDl~--s~~~--~~~~~~------~~~~I~sl~~spdg~~Lasgs-~dg~I~iwDl~t 343 (715)
++|+++++++++.. .++.|.+|++. +++. +..+.. .......|++++|+++|+++. .++.|.+|+++.
T Consensus 197 ~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~ 276 (345)
T PF10282_consen 197 LAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDP 276 (345)
T ss_dssp EEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECT
T ss_pred EEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEec
Confidence 99999999876665 46789999888 3422 222211 122578999999999998876 456899999932
Q ss_pred --C--eEEEEeecCCCCeEEEEEccCCCCEEEEE-eCCCcEEEEEcCCCCceEEEe--eccCCCEEEEEE
Q 005096 344 --M--KELESFRGHRKDVTALAWHPFHEEYFVSG-SLDGSIFHWLVGHETPQVEIH--NVHDNTVWDLAW 406 (715)
Q Consensus 344 --~--~~~~~~~~h~~~V~~l~~sp~~~~~l~sg-s~DG~I~iwd~~~~~~~~~~~--~~h~~~V~~l~~ 406 (715)
+ +.+..+.......+.+++++ ++++|+++ ..++.|.+|+++...-.+... ...-....||.|
T Consensus 277 ~~g~l~~~~~~~~~G~~Pr~~~~s~-~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~f 345 (345)
T PF10282_consen 277 ATGTLTLVQTVPTGGKFPRHFAFSP-DGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVCIVF 345 (345)
T ss_dssp TTTTEEEEEEEEESSSSEEEEEE-T-TSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEEEEEE
T ss_pred CCCceEEEEEEeCCCCCccEEEEeC-CCCEEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCCEEEeC
Confidence 2 44555555566689999999 56655555 467789999886443322222 223446667765
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.50 E-value=6.1e-12 Score=132.91 Aligned_cols=277 Identities=14% Similarity=0.199 Sum_probs=190.1
Q ss_pred CCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCC--------------
Q 005096 143 NRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGG-------------- 208 (715)
Q Consensus 143 H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg-------------- 208 (715)
-.-++..++|||.|++|++....| |.+|+...+..+..+. ...|..+.|+|+++||.+=+...
T Consensus 31 ~~~p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~l~~~~--~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~ 107 (561)
T COG5354 31 ENWPVAYVSESPLGTYLFSEHAAG-VECWGGPSKAKLVRFR--HPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSK 107 (561)
T ss_pred cCcchhheeecCcchheehhhccc-eEEccccchhheeeee--cCCceecccCcccceeeeeccCCccChhhccCCcccc
Confidence 556788999999999999988877 9999988877555554 46789999999999999865433
Q ss_pred -cEEEEeCCCCceeeeecCCCC---------------------------------------------CeEEEEEecCCC-
Q 005096 209 -AIKYWQNNMNNVKANKSAHKE---------------------------------------------SVRDLSFCRTDL- 241 (715)
Q Consensus 209 -~I~iwd~~~~~~~~~~~~h~~---------------------------------------------~I~~l~~spd~~- 241 (715)
.+.|||+.++.++..+..... .|....|++.++
T Consensus 108 n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~t~n~~~~p~~~lr~~gi~dFsisP~~n~ 187 (561)
T COG5354 108 NNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGSSLYIHEITDNIEEHPFKNLRPVGILDFSISPEGNH 187 (561)
T ss_pred CceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhccCeEEEEecCCccccCchhhccccceeeEEecCCCCC
Confidence 489999988776655433222 244444554321
Q ss_pred -EEEE-----EECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEe-----------CCCcEEEEECCCCce
Q 005096 242 -KFCS-----CSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGG-----------KDSLVKLWDAKSGRE 304 (715)
Q Consensus 242 -~Las-----~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs-----------~Dg~I~iwDl~s~~~ 304 (715)
.||. ...++.++||.+...+.+.+..-....-..+.|...|++|++-. .+.+++|++++.. .
T Consensus 188 ~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~-~ 266 (561)
T COG5354 188 DELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITER-S 266 (561)
T ss_pred ceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeeccc-c
Confidence 1222 23345566666654444433322223334678888888765431 1356888888843 3
Q ss_pred eEEeccCCCceEEEEEcCCCCEEEEEE--CCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCC---CcE
Q 005096 305 LCSFHGHKNMVLCVKWNQNGNWVLTAS--KDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLD---GSI 379 (715)
Q Consensus 305 ~~~~~~~~~~I~sl~~spdg~~Lasgs--~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~D---G~I 379 (715)
+.......+.|...+|.|+++.+++.+ .+-.+.++|++.. .. +......-+.+.|+| ..++++.++-| |.|
T Consensus 267 i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~--~~~Pe~~rNT~~fsp-~~r~il~agF~nl~gni 342 (561)
T COG5354 267 IPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LR--FYFPEQKRNTIFFSP-HERYILFAGFDNLQGNI 342 (561)
T ss_pred cceeccccccceeeeecccCCceeEEecccccceeecccccc-eE--EecCCcccccccccC-cccEEEEecCCccccce
Confidence 333335688999999999888776654 7889999999855 33 333445556788999 78888876655 679
Q ss_pred EEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEEC------CCeEEEEecCC
Q 005096 380 FHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSN------DHTTKFWCRNR 429 (715)
Q Consensus 380 ~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~------Dg~I~iWdl~~ 429 (715)
.|||..........+.+ ....-+.|++|+.++.+... |..|+||++..
T Consensus 343 ~i~~~~~rf~~~~~~~~--~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g 396 (561)
T COG5354 343 EIFDPAGRFKVAGAFNG--LNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYG 396 (561)
T ss_pred EEeccCCceEEEEEeec--CCceEeeccCCceEEEecCCCcccccCcceEEEEecC
Confidence 99999887766644432 24556789999998887653 78899999854
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.9e-12 Score=126.58 Aligned_cols=156 Identities=16% Similarity=0.350 Sum_probs=113.8
Q ss_pred EEEEEcCCCCEEEEEeC----------CCcEEEEeCCCC-ceeeeec-CCCCCeEEEEEecCCCEEEEEE--CCCcEEEE
Q 005096 190 RSMVWSHNDNWMVSGDD----------GGAIKYWQNNMN-NVKANKS-AHKESVRDLSFCRTDLKFCSCS--DDTTVKVW 255 (715)
Q Consensus 190 ~~l~~spdg~~L~tgs~----------dg~I~iwd~~~~-~~~~~~~-~h~~~I~~l~~spd~~~Las~s--~Dg~V~iw 255 (715)
..+.|+++|++|++-.. -+...||.++.. .....+. .....|.+++|+|+++.|+++. .++.|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 46788999887764322 133555555332 2222222 2345699999999999876654 56799999
Q ss_pred ECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCC---CcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEEC
Q 005096 256 DFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKD---SLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASK 332 (715)
Q Consensus 256 dl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~D---g~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~ 332 (715)
|++ .+.+..+. ...+..|.|+|+|++|++++.+ |.|.+||+++.+.+.+++ + ..++.++|+|||++|+++..
T Consensus 89 d~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~-~~~t~~~WsPdGr~~~ta~t 163 (194)
T PF08662_consen 89 DVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-H-SDATDVEWSPDGRYLATATT 163 (194)
T ss_pred cCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-c-CcEEEEEEcCCCCEEEEEEe
Confidence 996 55666654 4577899999999999998754 569999999888887765 3 34789999999999998874
Q ss_pred ------CCeEEEEECCCCeEEEEee
Q 005096 333 ------DQIIKLYDIRAMKELESFR 351 (715)
Q Consensus 333 ------dg~I~iwDl~t~~~~~~~~ 351 (715)
|+.++||+.. |+.+....
T Consensus 164 ~~r~~~dng~~Iw~~~-G~~l~~~~ 187 (194)
T PF08662_consen 164 SPRLRVDNGFKIWSFQ-GRLLYKKP 187 (194)
T ss_pred ccceeccccEEEEEec-CeEeEecc
Confidence 7889999985 77665543
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.49 E-value=5.8e-12 Score=136.79 Aligned_cols=306 Identities=14% Similarity=0.218 Sum_probs=210.0
Q ss_pred CCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC---------------ceEEEEeccCCCEEEEEEcCCCCEEEEEeCC
Q 005096 143 NRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSF---------------NFEMILQAHDHAIRSMVWSHNDNWMVSGDDG 207 (715)
Q Consensus 143 H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~---------------~~~~~l~~h~~~V~~l~~spdg~~L~tgs~d 207 (715)
....+.|++|+.+..+|++|+.||.++|..+.+. ..-.++.+|++.|..+.|+.+...|-+.+.+
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~ 92 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTS 92 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCC
Confidence 4567899999999999999999999999976542 1234578999999999999999999999999
Q ss_pred CcEEEEeCCCCceeeee--cCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEE
Q 005096 208 GAIKYWQNNMNNVKANK--SAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLL 285 (715)
Q Consensus 208 g~I~iwd~~~~~~~~~~--~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L 285 (715)
|.|.||-+-.+.-.... ...++.|.+++|..||..|+....||.|.|=.++..+.... .-...-...+.|++|.+.+
T Consensus 93 GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgK-eLkg~~l~hv~ws~D~~~~ 171 (1189)
T KOG2041|consen 93 GLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGK-ELKGQLLAHVLWSEDLEQA 171 (1189)
T ss_pred ceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecch-hcchheccceeecccHHHH
Confidence 99999988776533322 34567899999999999999999999998877654332211 1112234578999999998
Q ss_pred EEEeCCCcEEEEECCCC-------ceeEE----eccCCCceEEEEEc--------CCCCEEEEEECCCeEEEEECCCCeE
Q 005096 286 VSGGKDSLVKLWDAKSG-------RELCS----FHGHKNMVLCVKWN--------QNGNWVLTASKDQIIKLYDIRAMKE 346 (715)
Q Consensus 286 ~sgs~Dg~I~iwDl~s~-------~~~~~----~~~~~~~I~sl~~s--------pdg~~Lasgs~dg~I~iwDl~t~~~ 346 (715)
+.+-.+|.+.+||.... .+... +......|..+.|. ||.-.|+++..+|.+.|..-.+...
T Consensus 172 Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~ 251 (1189)
T KOG2041|consen 172 LFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPE 251 (1189)
T ss_pred HhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCC
Confidence 88989999999997532 11111 12223346667774 3677899999999998876554443
Q ss_pred EEEeecCCCCeEEEEEccCCCCEEEEEeCCC---------cEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEE
Q 005096 347 LESFRGHRKDVTALAWHPFHEEYFVSGSLDG---------SIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGS 417 (715)
Q Consensus 347 ~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG---------~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs 417 (715)
-..+. ..-.|..+.|++ ++.+|++++.+. .|.+|.- -......+......|++++|-..|-.++.+-
T Consensus 252 Pvv~d-tgm~~vgakWnh-~G~vLAvcG~~~da~~~~d~n~v~Fysp--~G~i~gtlkvpg~~It~lsWEg~gLriA~Av 327 (1189)
T KOG2041|consen 252 PVVVD-TGMKIVGAKWNH-NGAVLAVCGNDSDADEPTDSNKVHFYSP--YGHIVGTLKVPGSCITGLSWEGTGLRIAIAV 327 (1189)
T ss_pred CeEEe-cccEeecceecC-CCcEEEEccCcccccCccccceEEEecc--chhheEEEecCCceeeeeEEcCCceEEEEEe
Confidence 33333 236688899999 888998887653 3444432 1223344445567888888876664444332
Q ss_pred CCC--------------------------------eEEEEecCCCCCcccccccccCCccccceeeEEe
Q 005096 418 NDH--------------------------------TTKFWCRNRPGDTARDKFNMGQNQGYGEQNAVFA 454 (715)
Q Consensus 418 ~Dg--------------------------------~I~iWdl~~~~~~~~~~~~~~~~~g~~~~~~~~~ 454 (715)
|+ .|.+||.....+..+...+.....-+++.+....
T Consensus 328 -dsfiyfanIRP~ykWgy~e~TvVy~y~~~e~p~y~i~Fwdtk~nek~vK~V~~~~~~a~~~ehCvL~~ 395 (1189)
T KOG2041|consen 328 -DSFIYFANIRPEYKWGYIEETVVYVYQKEELPQYGIMFWDTKTNEKTVKTVTHFENMAFYREHCVLIN 395 (1189)
T ss_pred -cceEEEEeecccceEEEeeeEEEEEEccCCCcceEEEEEecccChhhhhhhcceeehheecccEEEEe
Confidence 22 3556777666665555555544444544444333
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.49 E-value=3e-13 Score=141.75 Aligned_cols=254 Identities=19% Similarity=0.264 Sum_probs=188.1
Q ss_pred CceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeee-cCCCCCeEEEEEec--CCCEEEEEECCCcE
Q 005096 176 FNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANK-SAHKESVRDLSFCR--TDLKFCSCSDDTTV 252 (715)
Q Consensus 176 ~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~-~~h~~~I~~l~~sp--d~~~Las~s~Dg~V 252 (715)
..+...+..|.+.|..|.|+..|..|++|+.|..|.+||+.....+..+ .+|...|.-..|.| +...|++++.||.|
T Consensus 132 ~~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqv 211 (559)
T KOG1334|consen 132 LRLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQV 211 (559)
T ss_pred hhhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCce
Confidence 3455678899999999999999999999999999999999887655544 57888888777876 45679999999999
Q ss_pred EEEECCC-Cee--EEEecccCCceEEEEEcCCC-CEEEEEeCCCcEEEEECCCCceeEEe---ccCCC---ceEEEEEcC
Q 005096 253 KVWDFAR-CQE--ERSLTGHGWDVKSVDWHPTK-SLLVSGGKDSLVKLWDAKSGRELCSF---HGHKN---MVLCVKWNQ 322 (715)
Q Consensus 253 ~iwdl~~-~~~--~~~l~~~~~~I~si~~spdg-~~L~sgs~Dg~I~iwDl~s~~~~~~~---~~~~~---~I~sl~~sp 322 (715)
++=.+.. +.. ...+..|.+.|.-++..|+. ..|.+++.|+.+.-+|++.+....++ +.+.. ....|+..|
T Consensus 212 r~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P 291 (559)
T KOG1334|consen 212 RVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDP 291 (559)
T ss_pred eeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCC
Confidence 9887633 222 34556788999999999875 47889999999999999976543332 22233 467888888
Q ss_pred CC-CEEEEEECCCeEEEEECCCCeE------EEEee------cCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCC-
Q 005096 323 NG-NWVLTASKDQIIKLYDIRAMKE------LESFR------GHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHET- 388 (715)
Q Consensus 323 dg-~~Lasgs~dg~I~iwDl~t~~~------~~~~~------~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~- 388 (715)
.. ..+++++.|-.++|||.+.... +..+. ...-.|++++++.+.+.+|++- .|-.|+++.-..+.
T Consensus 292 ~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSY-nDe~IYLF~~~~~~G 370 (559)
T KOG1334|consen 292 RNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASY-NDEDIYLFNKSMGDG 370 (559)
T ss_pred CCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeee-cccceEEeccccccC
Confidence 44 5899999999999999876432 22222 2334699999997566666655 46678888543221
Q ss_pred -----------ceEEEeeccCC--CEEEEEE-cCCCCEEEEEECCCeEEEEecCCC
Q 005096 389 -----------PQVEIHNVHDN--TVWDLAW-HPIGYLLCSGSNDHTTKFWCRNRP 430 (715)
Q Consensus 389 -----------~~~~~~~~h~~--~V~~l~~-spdg~~L~sgs~Dg~I~iWdl~~~ 430 (715)
....++++|.+ .|.++-| -|...++++|++-|.|.||+.+..
T Consensus 371 ~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~ 426 (559)
T KOG1334|consen 371 SEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTG 426 (559)
T ss_pred CCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchh
Confidence 12233566654 4666665 566799999999999999997543
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.7e-12 Score=125.80 Aligned_cols=155 Identities=19% Similarity=0.332 Sum_probs=112.9
Q ss_pred EEEEEcCCCCEEEEEeC----------CCeEEEEeCCC-CceEEEEec-cCCCEEEEEEcCCCCEEEEE--eCCCcEEEE
Q 005096 148 NRVLWTPTGRRLITGSQ----------SGEFTLWNGQS-FNFEMILQA-HDHAIRSMVWSHNDNWMVSG--DDGGAIKYW 213 (715)
Q Consensus 148 ~~l~~spdg~~Latgs~----------dg~I~Iwd~~~-~~~~~~l~~-h~~~V~~l~~spdg~~L~tg--s~dg~I~iw 213 (715)
..+.|+++|++|++-.. -+...||.++. ......+.. .++.|.+++|+|+++.|++. ..++.|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 45789999988775433 13355554422 223333333 34579999999999987654 456799999
Q ss_pred eCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECC---CcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeC
Q 005096 214 QNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDD---TTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGK 290 (715)
Q Consensus 214 d~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~D---g~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~ 290 (715)
|++ .+.+..+ ....++.|.|+|+|++|++++.+ |.|.+||+++.+.+..+. | ..++.++|+|||++|+++..
T Consensus 89 d~~-~~~i~~~--~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~-~~~t~~~WsPdGr~~~ta~t 163 (194)
T PF08662_consen 89 DVK-GKKIFSF--GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-H-SDATDVEWSPDGRYLATATT 163 (194)
T ss_pred cCc-ccEeEee--cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-c-CcEEEEEEcCCCCEEEEEEe
Confidence 997 4444443 45678899999999999998754 679999999888877765 3 34789999999999998864
Q ss_pred ------CCcEEEEECCCCceeEEe
Q 005096 291 ------DSLVKLWDAKSGRELCSF 308 (715)
Q Consensus 291 ------Dg~I~iwDl~s~~~~~~~ 308 (715)
|+.++||+.. |+.+...
T Consensus 164 ~~r~~~dng~~Iw~~~-G~~l~~~ 186 (194)
T PF08662_consen 164 SPRLRVDNGFKIWSFQ-GRLLYKK 186 (194)
T ss_pred ccceeccccEEEEEec-CeEeEec
Confidence 7889999985 6666544
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.8e-11 Score=136.99 Aligned_cols=234 Identities=14% Similarity=0.075 Sum_probs=149.6
Q ss_pred eEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeC-CC--cEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEE
Q 005096 167 EFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDD-GG--AIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKF 243 (715)
Q Consensus 167 ~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~-dg--~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~L 243 (715)
.|.++|.+..+. +.+..+...+.+..|++||+.|+..+. ++ .|++||+.+++.... ..........+|++|++.|
T Consensus 199 ~l~i~d~dG~~~-~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~l-t~~~g~~~~~~wSPDG~~L 276 (448)
T PRK04792 199 QLMIADYDGYNE-QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKV-TSFPGINGAPRFSPDGKKL 276 (448)
T ss_pred EEEEEeCCCCCc-eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEe-cCCCCCcCCeeECCCCCEE
Confidence 577778665443 455566778899999999998876543 33 588889887765332 2223344578999999987
Q ss_pred EE-EECCCc--EEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeC-CC--cEEEEECCCCceeEEeccCCCceEE
Q 005096 244 CS-CSDDTT--VKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGK-DS--LVKLWDAKSGRELCSFHGHKNMVLC 317 (715)
Q Consensus 244 as-~s~Dg~--V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~-Dg--~I~iwDl~s~~~~~~~~~~~~~I~s 317 (715)
+. .+.++. |++||+++++. ..+..+...+...+|++|++.|+..+. ++ .|+++|+++++..... ........
T Consensus 277 a~~~~~~g~~~Iy~~dl~tg~~-~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt-~~g~~~~~ 354 (448)
T PRK04792 277 ALVLSKDGQPEIYVVDIATKAL-TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLT-FEGEQNLG 354 (448)
T ss_pred EEEEeCCCCeEEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEe-cCCCCCcC
Confidence 65 455664 88888877654 344445556678999999998876654 33 4777788877644332 12233456
Q ss_pred EEEcCCCCEEEEEECC-C--eEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCc--EEEEEcCCCCceEE
Q 005096 318 VKWNQNGNWVLTASKD-Q--IIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGS--IFHWLVGHETPQVE 392 (715)
Q Consensus 318 l~~spdg~~Lasgs~d-g--~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~--I~iwd~~~~~~~~~ 392 (715)
.+|++||++|+..+.+ + .|.++|+.+++... +... .......|++++..++++...++. |++++.+. . ...
T Consensus 355 ~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G-~-~~~ 430 (448)
T PRK04792 355 GSITPDGRSMIMVNRTNGKFNIARQDLETGAMQV-LTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDG-R-FKA 430 (448)
T ss_pred eeECCCCCEEEEEEecCCceEEEEEECCCCCeEE-ccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECCC-C-ceE
Confidence 7999999999876653 3 46667888776432 2222 122345899944444555555554 55556532 2 223
Q ss_pred EeeccCCCEEEEEEcC
Q 005096 393 IHNVHDNTVWDLAWHP 408 (715)
Q Consensus 393 ~~~~h~~~V~~l~~sp 408 (715)
.+..+.+.+...+|+|
T Consensus 431 ~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 431 RLPAGQGEVKSPAWSP 446 (448)
T ss_pred ECcCCCCCcCCCccCC
Confidence 3333456677778876
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.1e-11 Score=138.28 Aligned_cols=219 Identities=16% Similarity=0.146 Sum_probs=150.6
Q ss_pred cCCCCccEEEEEEcCCCCEEEEEeCC---CeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEE-EEeCCC--cEEEE
Q 005096 140 LNKNRCSINRVLWTPTGRRLITGSQS---GEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMV-SGDDGG--AIKYW 213 (715)
Q Consensus 140 l~~H~~~I~~l~~spdg~~Latgs~d---g~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~-tgs~dg--~I~iw 213 (715)
+..+...+.+.+|+|||++|+..+.+ ..|++||+.+++.... ....+.+...+|++||+.|+ +.+.++ .|++|
T Consensus 194 l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l-~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~ 272 (430)
T PRK00178 194 LLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQI-TNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVM 272 (430)
T ss_pred EecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEc-cCCCCCcCCeEECCCCCEEEEEEccCCCceEEEE
Confidence 44567788999999999999877644 3699999988765443 33345566789999999886 444455 58888
Q ss_pred eCCCCceeeeecCCCCCeEEEEEecCCCEEEEEEC-CC--cEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeC
Q 005096 214 QNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSD-DT--TVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGK 290 (715)
Q Consensus 214 d~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~-Dg--~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~ 290 (715)
|+++++... +..+........|++|++.|+..+. ++ .|+++|+.+++...... ........+|++|++.|+..+.
T Consensus 273 d~~~~~~~~-lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~-~~~~~~~~~~Spdg~~i~~~~~ 350 (430)
T PRK00178 273 DLASRQLSR-VTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTF-VGNYNARPRLSADGKTLVMVHR 350 (430)
T ss_pred ECCCCCeEE-cccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec-CCCCccceEECCCCCEEEEEEc
Confidence 998876543 3445555677899999998877664 33 58888887766433322 2233456789999999887765
Q ss_pred C-C--cEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECC---CeEEEEECCCCeEEEEeecCCCCeEEEEEcc
Q 005096 291 D-S--LVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKD---QIIKLYDIRAMKELESFRGHRKDVTALAWHP 364 (715)
Q Consensus 291 D-g--~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~d---g~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp 364 (715)
+ + .|.+||+.+++.. .+.. ........|++||++|+..+.+ ..|.++++. +.....+....+.+...+|++
T Consensus 351 ~~~~~~l~~~dl~tg~~~-~lt~-~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~-g~~~~~l~~~~g~~~~p~ws~ 427 (430)
T PRK00178 351 QDGNFHVAAQDLQRGSVR-ILTD-TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSIN-GRVRLPLPTAQGEVREPSWSP 427 (430)
T ss_pred cCCceEEEEEECCCCCEE-EccC-CCCCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEECcCCCCCcCCCccCC
Confidence 3 3 4888999887643 3332 2233467899999999877654 357777775 444445555556677777776
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.47 E-value=4e-12 Score=144.40 Aligned_cols=199 Identities=16% Similarity=0.236 Sum_probs=163.2
Q ss_pred CCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCE----EEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 005096 142 KNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAI----RSMVWSHNDNWMVSGDDGGAIKYWQNNM 217 (715)
Q Consensus 142 ~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V----~~l~~spdg~~L~tgs~dg~I~iwd~~~ 217 (715)
...+.|....+.-+.+.++.++.++.+.|||.........+...+... .-+.++.+.-++++|+.-+.|.+|+...
T Consensus 85 ~~s~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~ 164 (967)
T KOG0974|consen 85 RFSDWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHE 164 (967)
T ss_pred hccccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccc
Confidence 344556666777788899999999999999998877766665443322 1223455666889999999999999885
Q ss_pred CceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEE-EecccCCceEEEEEcCCCCEEEEEeCCCcEEE
Q 005096 218 NNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEER-SLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKL 296 (715)
Q Consensus 218 ~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~-~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~i 296 (715)
.+.-..+.+|++.|..+.|+.|+.+++++|+|.++++|++++.+... ..-+|...|..++|+++ ++++++.|.+.++
T Consensus 165 dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrv 242 (967)
T KOG0974|consen 165 DNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRV 242 (967)
T ss_pred cCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEE
Confidence 55445688999999999999999999999999999999999988776 66789999999999977 8999999999999
Q ss_pred EECCCCceeEEeccCC-CceEEEEEcCCCCEEEEEECCCeEEEEECCC
Q 005096 297 WDAKSGRELCSFHGHK-NMVLCVKWNQNGNWVLTASKDQIIKLYDIRA 343 (715)
Q Consensus 297 wDl~s~~~~~~~~~~~-~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t 343 (715)
|+.+ ++.+.+++.|. ..|..++...+.-++++++.|+.+++||+..
T Consensus 243 W~~~-~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 243 WGVN-GTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred Eecc-cceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 9765 45555676664 4699999999999999999999999999864
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.2e-11 Score=137.50 Aligned_cols=217 Identities=16% Similarity=0.167 Sum_probs=150.0
Q ss_pred cCCCCccEEEEEEcCCCCEEEEEeCC---CeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEE-EeCCC--cEEEE
Q 005096 140 LNKNRCSINRVLWTPTGRRLITGSQS---GEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVS-GDDGG--AIKYW 213 (715)
Q Consensus 140 l~~H~~~I~~l~~spdg~~Latgs~d---g~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~t-gs~dg--~I~iw 213 (715)
+..+...+.+.+|++||++|+.++.+ ..|++||+.+++.... ..+...+.+++|++|++.|+. .+.++ .|++|
T Consensus 185 l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~-~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~ 263 (417)
T TIGR02800 185 ITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKV-ASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVM 263 (417)
T ss_pred eecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEe-ecCCCCccceEECCCCCEEEEEECCCCCccEEEE
Confidence 44466678899999999999987654 4799999998765443 345566778999999987764 44444 58888
Q ss_pred eCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECC-C--cEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeC
Q 005096 214 QNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDD-T--TVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGK 290 (715)
Q Consensus 214 d~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~D-g--~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~ 290 (715)
|+.++..... ..+........|++|++.|+.++.. + .|++||+.+++.. .+..+...+..++|++++++|+.++.
T Consensus 264 d~~~~~~~~l-~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~~~~~~~~~~spdg~~i~~~~~ 341 (417)
T TIGR02800 264 DLDGKQLTRL-TNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFRGGYNASPSWSPDGDLIAFVHR 341 (417)
T ss_pred ECCCCCEEEC-CCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCCCccCeEECCCCCEEEEEEc
Confidence 9887755433 3344445577899999988876653 3 5888888766543 34445566778999999999998887
Q ss_pred CC---cEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCC---eEEEEECCCCeEEEEeecCCCCeEEEEE
Q 005096 291 DS---LVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQ---IIKLYDIRAMKELESFRGHRKDVTALAW 362 (715)
Q Consensus 291 Dg---~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg---~I~iwDl~t~~~~~~~~~h~~~V~~l~~ 362 (715)
++ .|.+||+.++.. ..+... ......+|++|+++|+..+.++ .+++.+.. ++....+......+..++|
T Consensus 342 ~~~~~~i~~~d~~~~~~-~~l~~~-~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~g~~~~~~w 416 (417)
T TIGR02800 342 EGGGFNIAVMDLDGGGE-RVLTDT-GLDESPSFAPNGRMILYATTRGGRGVLGLVSTD-GRFRARLPLGNGDVREPAW 416 (417)
T ss_pred cCCceEEEEEeCCCCCe-EEccCC-CCCCCceECCCCCEEEEEEeCCCcEEEEEEECC-CceeeECCCCCCCcCCCCC
Confidence 76 789999987544 333322 2345678999999988877654 45555543 4555555444444444444
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=99.46 E-value=4.9e-11 Score=130.82 Aligned_cols=262 Identities=11% Similarity=0.032 Sum_probs=176.0
Q ss_pred CCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEE
Q 005096 156 GRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLS 235 (715)
Q Consensus 156 g~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~ 235 (715)
+..|++++.+|.|+.+|..+++.+..+............ +++.+++++.++.|..+|.++++++....... .+.+..
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~~~~p 141 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA--DGGLVFVGTEKGEVIALDAEDGKELWRAKLSS-EVLSPP 141 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE--cCCEEEEEcCCCEEEEEECCCCcEeeeeccCc-eeecCC
Confidence 568899999999999999999988776654432223333 46778888899999999999998876654332 222211
Q ss_pred EecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCce-----EEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEecc
Q 005096 236 FCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDV-----KSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHG 310 (715)
Q Consensus 236 ~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I-----~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~ 310 (715)
.. .+..++.++.++.|+.||.++++.+..+......+ .+..+. +..++++..++.|..+|+++++.+.....
T Consensus 142 ~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~~~W~~~~ 218 (377)
T TIGR03300 142 LV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--DGGVLVGFAGGKLVALDLQTGQPLWEQRV 218 (377)
T ss_pred EE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--CCEEEEECCCCEEEEEEccCCCEeeeecc
Confidence 11 34567778889999999999998877665432211 111222 34678888889999999999987765431
Q ss_pred CC----Cc------e-EEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcE
Q 005096 311 HK----NM------V-LCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSI 379 (715)
Q Consensus 311 ~~----~~------I-~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I 379 (715)
.. .. + .+..+ .+..+++++.+|.++.||.++++.+...... ....... .+..|++++.||.|
T Consensus 219 ~~~~g~~~~~~~~~~~~~p~~--~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~--~~~~p~~---~~~~vyv~~~~G~l 291 (377)
T TIGR03300 219 ALPKGRTELERLVDVDGDPVV--DGGQVYAVSYQGRVAALDLRSGRVLWKRDAS--SYQGPAV---DDNRLYVTDADGVV 291 (377)
T ss_pred ccCCCCCchhhhhccCCccEE--ECCEEEEEEcCCEEEEEECCCCcEEEeeccC--CccCceE---eCCEEEEECCCCeE
Confidence 10 00 0 11112 3567888889999999999999988776522 1222222 35677777889999
Q ss_pred EEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCCCCC
Q 005096 380 FHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGD 432 (715)
Q Consensus 380 ~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~~ 432 (715)
+.+|..+++.+.+........+..... .+..|++++.||.|++||.++.+.
T Consensus 292 ~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~ 342 (377)
T TIGR03300 292 VALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSF 342 (377)
T ss_pred EEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCE
Confidence 999998887665442211222222233 356889999999999999765433
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.45 E-value=2e-10 Score=122.11 Aligned_cols=258 Identities=10% Similarity=0.023 Sum_probs=168.9
Q ss_pred CeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeC----------CCcEEEEeCCCCceeeeecCCC-------
Q 005096 166 GEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDD----------GGAIKYWQNNMNNVKANKSAHK------- 228 (715)
Q Consensus 166 g~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~----------dg~I~iwd~~~~~~~~~~~~h~------- 228 (715)
++|.|.|..+.+.+..+..-...-. + +++|++.|+++.. +..|.+||..+.+.+..+..-.
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~~-~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~ 104 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPNP-V-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVG 104 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCce-e-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhcc
Confidence 7899999999999888876444432 4 9999998876654 7899999999999887775422
Q ss_pred CCeEEEEEecCCCEEEEEE-C-CCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCC-Ccee
Q 005096 229 ESVRDLSFCRTDLKFCSCS-D-DTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKS-GREL 305 (715)
Q Consensus 229 ~~I~~l~~spd~~~Las~s-~-Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s-~~~~ 305 (715)
..-..+++++||++|++.. . +..|.++|+.+++.+..+..-. ...-+..+.+..+ +-+.||......+.+ ++..
T Consensus 105 ~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~t~e~~~~--~~~~Dg~~~~v~~d~~g~~~ 181 (352)
T TIGR02658 105 TYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFPTANDTFF--MHCRDGSLAKVGYGTKGNPK 181 (352)
T ss_pred CccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEEecCCccE--EEeecCceEEEEecCCCceE
Confidence 2334789999999998776 3 6899999999999988876422 2223333322222 223445544433332 2211
Q ss_pred -EE---eccCCCce-EEEEEcC-CCCEEEEEECCCeEEEEECCCC-----eEEEEeec-------CCCCeEEEEEccCCC
Q 005096 306 -CS---FHGHKNMV-LCVKWNQ-NGNWVLTASKDQIIKLYDIRAM-----KELESFRG-------HRKDVTALAWHPFHE 367 (715)
Q Consensus 306 -~~---~~~~~~~I-~sl~~sp-dg~~Lasgs~dg~I~iwDl~t~-----~~~~~~~~-------h~~~V~~l~~sp~~~ 367 (715)
.. +...+..+ ..-.|++ +++++++..+ |.|.+.|+... +.+..+.. ....+.-++++++++
T Consensus 182 ~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~ 260 (352)
T TIGR02658 182 IKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARD 260 (352)
T ss_pred EeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCC
Confidence 11 11100000 0113455 8888877776 99999996432 22222221 122344599999555
Q ss_pred CEEEEEe---------CCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCC-EEEEEE-CCCeEEEEecCCCC
Q 005096 368 EYFVSGS---------LDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGY-LLCSGS-NDHTTKFWCRNRPG 431 (715)
Q Consensus 368 ~~l~sgs---------~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~-~L~sgs-~Dg~I~iWdl~~~~ 431 (715)
++++... ..+.|.++|..+.+.+.++..+ ..++.+++++|++ +|++.+ .++.|.++|....+
T Consensus 261 ~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG--~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k 333 (352)
T TIGR02658 261 RIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELG--HEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGK 333 (352)
T ss_pred EEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCC--CceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCe
Confidence 5555331 2257999999888887777753 4899999999999 777666 57889999986543
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=6.3e-11 Score=131.57 Aligned_cols=238 Identities=14% Similarity=0.132 Sum_probs=150.2
Q ss_pred CeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEE---EEEeCCC--cEEEEeCCCCceeeeecCCCCCeEEEEEecCC
Q 005096 166 GEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWM---VSGDDGG--AIKYWQNNMNNVKANKSAHKESVRDLSFCRTD 240 (715)
Q Consensus 166 g~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L---~tgs~dg--~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~ 240 (715)
..|.+.|.+..+.. .+......+.+-+|+|||+.+ ++...+| .|.+.++..++.... ..........+|+|||
T Consensus 165 ~~l~~~d~dG~~~~-~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~l-t~~~g~~~~p~wSPDG 242 (428)
T PRK01029 165 GELWSVDYDGQNLR-PLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKI-LALQGNQLMPTFSPRK 242 (428)
T ss_pred ceEEEEcCCCCCce-EcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEe-ecCCCCccceEECCCC
Confidence 46778887665543 344455667788999999752 3555554 467778877654433 2344455678999999
Q ss_pred CEEEEEEC-CC----cEEEEECCCC---eeEEEecccCCceEEEEEcCCCCEEEEEe-CCCcEEEE--ECCC-CceeEEe
Q 005096 241 LKFCSCSD-DT----TVKVWDFARC---QEERSLTGHGWDVKSVDWHPTKSLLVSGG-KDSLVKLW--DAKS-GRELCSF 308 (715)
Q Consensus 241 ~~Las~s~-Dg----~V~iwdl~~~---~~~~~l~~~~~~I~si~~spdg~~L~sgs-~Dg~I~iw--Dl~s-~~~~~~~ 308 (715)
+.|+..+. +| .+.+||+..+ +...............+|+|||+.|+..+ .++...|| ++.. +.....+
T Consensus 243 ~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~l 322 (428)
T PRK01029 243 KLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLL 322 (428)
T ss_pred CEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEe
Confidence 99887653 22 3444776542 22223322233456789999999877765 45654444 5542 3334445
Q ss_pred ccCCCceEEEEEcCCCCEEEEEECC---CeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEE-EEeCC--CcEEEE
Q 005096 309 HGHKNMVLCVKWNQNGNWVLTASKD---QIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFV-SGSLD--GSIFHW 382 (715)
Q Consensus 309 ~~~~~~I~sl~~spdg~~Lasgs~d---g~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~-sgs~D--G~I~iw 382 (715)
......+....|+|||++|+..+.+ ..|.+||+.+++.... ......+....|++ +++.|+ ++..+ ..|++|
T Consensus 323 t~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~L-t~~~~~~~~p~wSp-DG~~L~f~~~~~g~~~L~~v 400 (428)
T PRK01029 323 TKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQL-TTSPENKESPSWAI-DSLHLVYSAGNSNESELYLI 400 (428)
T ss_pred ccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEc-cCCCCCccceEECC-CCCEEEEEECCCCCceEEEE
Confidence 5455567889999999999877643 3799999988876443 33345677899999 555554 44433 457788
Q ss_pred EcCCCCceEEEeeccCCCEEEEEEcCC
Q 005096 383 LVGHETPQVEIHNVHDNTVWDLAWHPI 409 (715)
Q Consensus 383 d~~~~~~~~~~~~~h~~~V~~l~~spd 409 (715)
|+..++.. .+. ...+.+...+|++-
T Consensus 401 dl~~g~~~-~Lt-~~~g~~~~p~Ws~~ 425 (428)
T PRK01029 401 SLITKKTR-KIV-IGSGEKRFPSWGAF 425 (428)
T ss_pred ECCCCCEE-Eee-cCCCcccCceecCC
Confidence 88665432 222 23455667788764
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.8e-11 Score=136.89 Aligned_cols=217 Identities=13% Similarity=0.119 Sum_probs=146.6
Q ss_pred CCCccEEEEEEcCCCCEEEEEeCC---CeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEE-EeCCCc--EEEEeC
Q 005096 142 KNRCSINRVLWTPTGRRLITGSQS---GEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVS-GDDGGA--IKYWQN 215 (715)
Q Consensus 142 ~H~~~I~~l~~spdg~~Latgs~d---g~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~t-gs~dg~--I~iwd~ 215 (715)
.+...+.+.+|+|||++|+..+.+ ..|++||+.+++.... ....+.....+|++|++.|+. .+.++. |++||+
T Consensus 215 ~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~l-t~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl 293 (448)
T PRK04792 215 RSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKV-TSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDI 293 (448)
T ss_pred cCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEe-cCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEEC
Confidence 345567889999999999876543 3588999988765433 323344557899999998864 556665 777788
Q ss_pred CCCceeeeecCCCCCeEEEEEecCCCEEEEEEC-CC--cEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCC-
Q 005096 216 NMNNVKANKSAHKESVRDLSFCRTDLKFCSCSD-DT--TVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKD- 291 (715)
Q Consensus 216 ~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~-Dg--~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~D- 291 (715)
++++... +..+...+...+|++|++.|+..+. ++ .|+++|+++++.... ..........+|++||++|+..+.+
T Consensus 294 ~tg~~~~-lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~L-t~~g~~~~~~~~SpDG~~l~~~~~~~ 371 (448)
T PRK04792 294 ATKALTR-ITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRL-TFEGEQNLGGSITPDGRSMIMVNRTN 371 (448)
T ss_pred CCCCeEE-CccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEE-ecCCCCCcCeeECCCCCEEEEEEecC
Confidence 8776543 3344556678899999998877654 33 477778877654433 2222334567999999988776553
Q ss_pred C--cEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECC-C--eEEEEECCCCeEEEEeecCCCCeEEEEEcc
Q 005096 292 S--LVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKD-Q--IIKLYDIRAMKELESFRGHRKDVTALAWHP 364 (715)
Q Consensus 292 g--~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~d-g--~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp 364 (715)
+ .|.++|+++++.. .+... .......|++||+.|+..+.+ + .|+++|. +++....+......+...+|+|
T Consensus 372 g~~~I~~~dl~~g~~~-~lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 372 GKFNIARQDLETGAMQ-VLTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLPAGQGEVKSPAWSP 446 (448)
T ss_pred CceEEEEEECCCCCeE-EccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEECcCCCCCcCCCccCC
Confidence 3 4566788877643 33322 223356899999988876643 3 4777786 4666666766667778888876
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.9e-11 Score=131.69 Aligned_cols=188 Identities=18% Similarity=0.227 Sum_probs=156.2
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCceeeeecC---CCCCeEEEEEe--------------------cCCCEEEEEECCCcEE
Q 005096 197 NDNWMVSGDDGGAIKYWQNNMNNVKANKSA---HKESVRDLSFC--------------------RTDLKFCSCSDDTTVK 253 (715)
Q Consensus 197 dg~~L~tgs~dg~I~iwd~~~~~~~~~~~~---h~~~I~~l~~s--------------------pd~~~Las~s~Dg~V~ 253 (715)
-..++|....||.++||+..++++...+.. ..+..++..|. .|...|+-|...|.|.
T Consensus 4 ~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~ 83 (541)
T KOG4547|consen 4 ALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVL 83 (541)
T ss_pred hhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEE
Confidence 356889999999999999998877666532 23344455442 1335578888899999
Q ss_pred EEECCCCeeEEEec--ccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEE
Q 005096 254 VWDFARCQEERSLT--GHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTAS 331 (715)
Q Consensus 254 iwdl~~~~~~~~l~--~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs 331 (715)
+|++..++....+. .|.+.|.++.++.+-..|.+++.|+.+..|+..+.+.++.++.....+.++++++|+..|++++
T Consensus 84 ~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~as 163 (541)
T KOG4547|consen 84 LYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTAS 163 (541)
T ss_pred EEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEecc
Confidence 99999998888776 5888999999998889999999999999999999999999999999999999999999999886
Q ss_pred CCCeEEEEECCCCeEEEEeecCCCCeEEEEEccC-----CCCEEEEEeCCCcEEEEEcCC
Q 005096 332 KDQIIKLYDIRAMKELESFRGHRKDVTALAWHPF-----HEEYFVSGSLDGSIFHWLVGH 386 (715)
Q Consensus 332 ~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~-----~~~~l~sgs~DG~I~iwd~~~ 386 (715)
+.|++||+++.+.+..|.+|.+.|+++.|... +..+|.+...+..|.+|-++.
T Consensus 164 --~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 164 --RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred --ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 68999999999999999999999999999773 234455555666788887654
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.44 E-value=2e-11 Score=131.58 Aligned_cols=188 Identities=15% Similarity=0.219 Sum_probs=157.0
Q ss_pred CCCCEEEEEeCCCeEEEEeCCCCceEEEEec---cCCCEEEEEEc------C--------------CCCEEEEEeCCCcE
Q 005096 154 PTGRRLITGSQSGEFTLWNGQSFNFEMILQA---HDHAIRSMVWS------H--------------NDNWMVSGDDGGAI 210 (715)
Q Consensus 154 pdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~---h~~~V~~l~~s------p--------------dg~~L~tgs~dg~I 210 (715)
+...++|....||.++|||..+.+....+.. -.+..++..|. + |...|+-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 4456899999999999999998877666543 13344444442 1 33467888899999
Q ss_pred EEEeCCCCceeeeec--CCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEE
Q 005096 211 KYWQNNMNNVKANKS--AHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSG 288 (715)
Q Consensus 211 ~iwd~~~~~~~~~~~--~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sg 288 (715)
.+|++..+++...+. .|.+.|.++.++.+-..|.+++.|+.|..|+..++..++.+......+.++++++|++.|+++
T Consensus 83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~a 162 (541)
T KOG4547|consen 83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTA 162 (541)
T ss_pred EEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEec
Confidence 999999998887775 688999999999999999999999999999999999999999999999999999999999988
Q ss_pred eCCCcEEEEECCCCceeEEeccCCCceEEEEEcCC-----CCEEEEE-ECCCeEEEEECCC
Q 005096 289 GKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQN-----GNWVLTA-SKDQIIKLYDIRA 343 (715)
Q Consensus 289 s~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spd-----g~~Lasg-s~dg~I~iwDl~t 343 (715)
+ +.|++||+++++.+..|.+|.+.|+++.|..+ |.+++++ ..+..|.+|-++.
T Consensus 163 s--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 163 S--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred c--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 7 68999999999999999999999999999876 6666654 3555677776654
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.6e-10 Score=126.67 Aligned_cols=255 Identities=13% Similarity=0.042 Sum_probs=170.2
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeecCCCCCe---
Q 005096 155 TGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESV--- 231 (715)
Q Consensus 155 dg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I--- 231 (715)
++..+++++.+|.|+.+|.++++.+............... .++.+++++.++.|..||.++++.+.........+
T Consensus 104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~ 181 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPLV--ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLR 181 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCEE--ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeec
Confidence 4668889999999999999999887765543222111222 34567778889999999999998776654433221
Q ss_pred --EEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCC----c------e-EEEEEcCCCCEEEEEeCCCcEEEEE
Q 005096 232 --RDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGW----D------V-KSVDWHPTKSLLVSGGKDSLVKLWD 298 (715)
Q Consensus 232 --~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~----~------I-~si~~spdg~~L~sgs~Dg~I~iwD 298 (715)
.+..+ .+..++.+..++.|..+|.++++.+........ . + .+..+ .+..+++++.++.++.||
T Consensus 182 ~~~sp~~--~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~--~~~~vy~~~~~g~l~a~d 257 (377)
T TIGR03300 182 GSASPVI--ADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV--DGGQVYAVSYQGRVAALD 257 (377)
T ss_pred CCCCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE--ECCEEEEEEcCCEEEEEE
Confidence 11112 234677888899999999998877654321100 0 1 11122 256788888899999999
Q ss_pred CCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCC-CCeEEEEEccCCCCEEEEEeCCC
Q 005096 299 AKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHR-KDVTALAWHPFHEEYFVSGSLDG 377 (715)
Q Consensus 299 l~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~-~~V~~l~~sp~~~~~l~sgs~DG 377 (715)
.++++.+..... ........ ++..|++++.||.|..+|..+++.+....... ....+... .+..|++++.+|
T Consensus 258 ~~tG~~~W~~~~--~~~~~p~~--~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i---~g~~l~~~~~~G 330 (377)
T TIGR03300 258 LRSGRVLWKRDA--SSYQGPAV--DDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV---VGGYLVVGDFEG 330 (377)
T ss_pred CCCCcEEEeecc--CCccCceE--eCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE---ECCEEEEEeCCC
Confidence 999988776652 11222222 46778888899999999999999887764322 22233333 356888889999
Q ss_pred cEEEEEcCCCCceEEEeeccCCCE-EEEEEcCCCCEEEEEECCCeEEEE
Q 005096 378 SIFHWLVGHETPQVEIHNVHDNTV-WDLAWHPIGYLLCSGSNDHTTKFW 425 (715)
Q Consensus 378 ~I~iwd~~~~~~~~~~~~~h~~~V-~~l~~spdg~~L~sgs~Dg~I~iW 425 (715)
.|+++|.++++.+.+... +...+ ....+. + ..|+.++.||.|+.|
T Consensus 331 ~l~~~d~~tG~~~~~~~~-~~~~~~~sp~~~-~-~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 331 YLHWLSREDGSFVARLKT-DGSGIASPPVVV-G-DGLLVQTRDGDLYAF 376 (377)
T ss_pred EEEEEECCCCCEEEEEEc-CCCccccCCEEE-C-CEEEEEeCCceEEEe
Confidence 999999988877665543 33233 233333 3 458889999999876
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=5.5e-11 Score=132.03 Aligned_cols=222 Identities=12% Similarity=0.107 Sum_probs=144.8
Q ss_pred cCCCCccEEEEEEcCCCCEEE---EEeCC--CeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeC-CC----c
Q 005096 140 LNKNRCSINRVLWTPTGRRLI---TGSQS--GEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDD-GG----A 209 (715)
Q Consensus 140 l~~H~~~I~~l~~spdg~~La---tgs~d--g~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~-dg----~ 209 (715)
+......+.+-+|||||+.++ +...+ ..|++.++.+++.... ....+.....+|+|||+.|+..+. +| .
T Consensus 180 lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~l-t~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~ 258 (428)
T PRK01029 180 LTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKI-LALQGNQLMPTFSPRKKLLAFISDRYGNPDLF 258 (428)
T ss_pred cccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEe-ecCCCCccceEECCCCCEEEEEECCCCCccee
Confidence 333455667889999997532 34334 3588889887765443 334555667899999998876543 23 3
Q ss_pred EEEEeCCCC---ceeeeecCCCCCeEEEEEecCCCEEEEEE-CCCcEEEE--ECCC-CeeEEEecccCCceEEEEEcCCC
Q 005096 210 IKYWQNNMN---NVKANKSAHKESVRDLSFCRTDLKFCSCS-DDTTVKVW--DFAR-CQEERSLTGHGWDVKSVDWHPTK 282 (715)
Q Consensus 210 I~iwd~~~~---~~~~~~~~h~~~I~~l~~spd~~~Las~s-~Dg~V~iw--dl~~-~~~~~~l~~~~~~I~si~~spdg 282 (715)
+.+|++..+ ............+...+|++||+.|+..+ .++...|| ++.. +.....+......+...+|+|||
T Consensus 259 ~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG 338 (428)
T PRK01029 259 IQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDG 338 (428)
T ss_pred EEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCC
Confidence 444666542 22222222233456789999999888766 45654555 4432 23344455455567889999999
Q ss_pred CEEEEEeCC---CcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEEC---CCeEEEEECCCCeEEEEeecCCCC
Q 005096 283 SLLVSGGKD---SLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASK---DQIIKLYDIRAMKELESFRGHRKD 356 (715)
Q Consensus 283 ~~L~sgs~D---g~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~---dg~I~iwDl~t~~~~~~~~~h~~~ 356 (715)
+.|+..+.+ ..|.+||+.+++... +......+....|++||++|+..+. +..|++||+.+++..... .....
T Consensus 339 ~~Laf~~~~~g~~~I~v~dl~~g~~~~-Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt-~~~g~ 416 (428)
T PRK01029 339 KKIAFCSVIKGVRQICVYDLATGRDYQ-LTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIV-IGSGE 416 (428)
T ss_pred CEEEEEEcCCCCcEEEEEECCCCCeEE-ccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee-cCCCc
Confidence 988876543 369999999887544 3333446788999999998886543 357889999877654433 34455
Q ss_pred eEEEEEcc
Q 005096 357 VTALAWHP 364 (715)
Q Consensus 357 V~~l~~sp 364 (715)
+...+|+|
T Consensus 417 ~~~p~Ws~ 424 (428)
T PRK01029 417 KRFPSWGA 424 (428)
T ss_pred ccCceecC
Confidence 67778876
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.6e-10 Score=135.21 Aligned_cols=286 Identities=13% Similarity=0.190 Sum_probs=198.5
Q ss_pred CCCccEEEEEEcCCCCEEEEEeCCCeEEEE----eCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCC-
Q 005096 142 KNRCSINRVLWTPTGRRLITGSQSGEFTLW----NGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNN- 216 (715)
Q Consensus 142 ~H~~~I~~l~~spdg~~Latgs~dg~I~Iw----d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~- 216 (715)
...+.|.++.|-.+...|+++..+|.|.++ |..+.. +.....-+..|.+++||||+.+|+..+.+++|.+.+.+
T Consensus 73 ~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~-~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~f 151 (928)
T PF04762_consen 73 DPNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDE-IEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDF 151 (928)
T ss_pred CCCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCce-eEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccc
Confidence 455789999999999999999999999999 544433 33334457899999999999999999888888776421
Q ss_pred ---------C---C----------ceeeeecC------------------------CCCCeEEEEEecCCCEEEEEEC--
Q 005096 217 ---------M---N----------NVKANKSA------------------------HKESVRDLSFCRTDLKFCSCSD-- 248 (715)
Q Consensus 217 ---------~---~----------~~~~~~~~------------------------h~~~I~~l~~spd~~~Las~s~-- 248 (715)
. + +....+.+ ..+.-..|+|..||.+||+.+.
T Consensus 152 d~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~ 231 (928)
T PF04762_consen 152 DPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEP 231 (928)
T ss_pred eEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEc
Confidence 0 0 00000000 2334567889999999998774
Q ss_pred -C---CcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeC---CCcEEEEECCCCceeEEe----ccCCCceEE
Q 005096 249 -D---TTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGK---DSLVKLWDAKSGRELCSF----HGHKNMVLC 317 (715)
Q Consensus 249 -D---g~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~---Dg~I~iwDl~s~~~~~~~----~~~~~~I~s 317 (715)
+ ..|+||+-+ +....+.....+--.+++|.|.|++|++.-. ...|.+|.-+ |-.-..| ......|..
T Consensus 232 ~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErN-GLrhgeF~l~~~~~~~~v~~ 309 (928)
T PF04762_consen 232 ETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERN-GLRHGEFTLRFDPEEEKVIE 309 (928)
T ss_pred CCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecC-CcEeeeEecCCCCCCceeeE
Confidence 2 579999854 5554444444444568999999999998764 3457777743 4333333 234567999
Q ss_pred EEEcCCCCEEEEEECCCeEEEEECCCCe--EEEEeecC-CCCeEEEEEccCCCCEEEEEeCCCcEEEEEc----CCCC--
Q 005096 318 VKWNQNGNWVLTASKDQIIKLYDIRAMK--ELESFRGH-RKDVTALAWHPFHEEYFVSGSLDGSIFHWLV----GHET-- 388 (715)
Q Consensus 318 l~~spdg~~Lasgs~dg~I~iwDl~t~~--~~~~~~~h-~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~----~~~~-- 388 (715)
|.|+.|+..||+...|. |.+|-..+.. ...++... ...+..+.|++.+...|...+.+|.+.++++ ....
T Consensus 310 l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~ 388 (928)
T PF04762_consen 310 LAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGS 388 (928)
T ss_pred EEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCC
Confidence 99999999999987665 9999988754 23333322 3345569999987788888887777765543 2110
Q ss_pred -----ceEEEee-----------------------ccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCCCC
Q 005096 389 -----PQVEIHN-----------------------VHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPG 431 (715)
Q Consensus 389 -----~~~~~~~-----------------------~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~ 431 (715)
....+.. .....|.+++|++++..+++...||.|.+|......
T Consensus 389 ~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~ 459 (928)
T PF04762_consen 389 SPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKN 459 (928)
T ss_pred CccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCC
Confidence 0111111 134579999999998889999999999999965543
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.41 E-value=7.5e-12 Score=126.44 Aligned_cols=252 Identities=15% Similarity=0.281 Sum_probs=195.8
Q ss_pred ceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEe-CCCCceeeee-cCCCCCeEEEEEecCCCEEEEEECCCcEEE
Q 005096 177 NFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQ-NNMNNVKANK-SAHKESVRDLSFCRTDLKFCSCSDDTTVKV 254 (715)
Q Consensus 177 ~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd-~~~~~~~~~~-~~h~~~I~~l~~spd~~~Las~s~Dg~V~i 254 (715)
.+...+++|.+.|++...-+...-+++.+.|.+++||- .+.++....+ ......++++.+..+...|+++-.+|++.-
T Consensus 15 ~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvte 94 (404)
T KOG1409|consen 15 ELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTE 94 (404)
T ss_pred hhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEE
Confidence 35566788888899888888888899999999999995 3334333222 334678899999999999999999999998
Q ss_pred EEC----CCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEE
Q 005096 255 WDF----ARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTA 330 (715)
Q Consensus 255 wdl----~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasg 330 (715)
+.+ ++....+....|...|..+-|+-..+.+++.+.|..+.---.+++..+..+. .....+++.+.-. +.++|
T Consensus 95 fs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~-~~~~~t~~~~d~~--~~fvG 171 (404)
T KOG1409|consen 95 FALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYN-FETPASALQFDAL--YAFVG 171 (404)
T ss_pred EEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceE-eeccCCCCceeeE--EEEec
Confidence 866 3445566677899999999999888999999999887655555555443322 1111122222211 55667
Q ss_pred ECCCeEEEEEC--CCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcC
Q 005096 331 SKDQIIKLYDI--RAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHP 408 (715)
Q Consensus 331 s~dg~I~iwDl--~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~sp 408 (715)
...|.|.+..+ .....+.++.+|...+++++|.+ ...+|.+|..|..|.+||+...........+|.+.|..+....
T Consensus 172 d~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~-~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~ 250 (404)
T KOG1409|consen 172 DHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDP-GQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQ 250 (404)
T ss_pred ccccceEEEEEeecCCceEEEEcCcccceEEEEEcC-CCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhh
Confidence 67776666544 34567889999999999999999 8999999999999999999888888888888999999999988
Q ss_pred CCCEEEEEECCCeEEEEecCCCCC
Q 005096 409 IGYLLCSGSNDHTTKFWCRNRPGD 432 (715)
Q Consensus 409 dg~~L~sgs~Dg~I~iWdl~~~~~ 432 (715)
.-+.|++++.||.|.+|+++-...
T Consensus 251 ~t~~l~S~~edg~i~~w~mn~~r~ 274 (404)
T KOG1409|consen 251 HTRQLISCGEDGGIVVWNMNVKRV 274 (404)
T ss_pred hheeeeeccCCCeEEEEeccceee
Confidence 889999999999999999976444
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.40 E-value=7.3e-11 Score=125.69 Aligned_cols=279 Identities=17% Similarity=0.325 Sum_probs=197.9
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeC-----------CCcEEEEeC
Q 005096 147 INRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDD-----------GGAIKYWQN 215 (715)
Q Consensus 147 I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~-----------dg~I~iwd~ 215 (715)
=+-+.|||.|.||+|-...| |.+|-.++...+..+. | -.|.-+.|||+.+||+|-+. ...|+|||+
T Consensus 213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-H-p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI 289 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-H-PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDI 289 (698)
T ss_pred eeeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc-C-CCceeeecCCccceEEEecCCccccCcccCCCceEEEEEc
Confidence 46789999999999999988 9999988877776664 2 46888999999999998542 257999999
Q ss_pred CCCceeeeecCCCC--C-eEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeC--
Q 005096 216 NMNNVKANKSAHKE--S-VRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGK-- 290 (715)
Q Consensus 216 ~~~~~~~~~~~h~~--~-I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~-- 290 (715)
.+|.+.+.+....+ . -.-+.||.|++++|....| .|.||+..+...+..-.-.-..|....|+|.+++||.=..
T Consensus 290 ~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~-sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~ 368 (698)
T KOG2314|consen 290 ATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN-SISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPET 368 (698)
T ss_pred cccchhcceeccCCCccccceEEeccCCceeEEeccc-eEEEEecCceeeecccccCCccccCcccCCCcceEEEEcccc
Confidence 99998887765322 2 2346899999999887764 6999998765444333334567899999999998875432
Q ss_pred ---CCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEEC-------C---CeEEEEECCCCeEEEEeecCCCCe
Q 005096 291 ---DSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASK-------D---QIIKLYDIRAMKELESFRGHRKDV 357 (715)
Q Consensus 291 ---Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~-------d---g~I~iwDl~t~~~~~~~~~h~~~V 357 (715)
-..+.|..+-+++.+++.+.+.-.-..+-|-.+|++|++--. . ..+.|+.++....-.....-...|
T Consensus 369 ~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~v 448 (698)
T KOG2314|consen 369 NNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESV 448 (698)
T ss_pred cCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchhe
Confidence 235778888888888777666555566788889998886321 1 135566666544433333456778
Q ss_pred EEEEEccCCCCEEEEEeC--CCcEEEEEcCCCCceEE-EeeccCCCEEEEEEcCCCCEEEEEE---CCCeEEEEecCC
Q 005096 358 TALAWHPFHEEYFVSGSL--DGSIFHWLVGHETPQVE-IHNVHDNTVWDLAWHPIGYLLCSGS---NDHTTKFWCRNR 429 (715)
Q Consensus 358 ~~l~~sp~~~~~l~sgs~--DG~I~iwd~~~~~~~~~-~~~~h~~~V~~l~~spdg~~L~sgs---~Dg~I~iWdl~~ 429 (715)
...+|-|.++++.+..+. ..+|.+|.+++.....+ +........+.+.|+|.|++++.+. ..|.+.++|++.
T Consensus 449 i~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~ 526 (698)
T KOG2314|consen 449 IAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDY 526 (698)
T ss_pred eeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcccccceEEEcCCCcEEEEEEecccccceEEEecch
Confidence 999999944444333333 34689998874322222 2222345678899999999988765 468999999874
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=99.37 E-value=8.9e-10 Score=115.49 Aligned_cols=172 Identities=13% Similarity=0.140 Sum_probs=131.8
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCC-cEEEEeCCCCceeeeecCCCCCeEE
Q 005096 155 TGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGG-AIKYWQNNMNNVKANKSAHKESVRD 233 (715)
Q Consensus 155 dg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg-~I~iwd~~~~~~~~~~~~h~~~I~~ 233 (715)
+|++++..+. |...|.+...+-.+. -++...|.-..+.-+.+-++.|..|| .|-|+|.++++.... ...-+.|.+
T Consensus 331 ~Gd~ia~VSR-GkaFi~~~~~~~~iq--v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~-e~~lg~I~a 406 (668)
T COG4946 331 NGDYIALVSR-GKAFIMRPWDGYSIQ--VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRI-EKDLGNIEA 406 (668)
T ss_pred CCcEEEEEec-CcEEEECCCCCeeEE--cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEe-eCCccceEE
Confidence 3455555543 344454433332222 24566788888888888899999998 899999998876654 456678999
Q ss_pred EEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCC----cEEEEECCCCceeEEec
Q 005096 234 LSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDS----LVKLWDAKSGRELCSFH 309 (715)
Q Consensus 234 l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg----~I~iwDl~s~~~~~~~~ 309 (715)
+..+++|++++++.....|.++|+++++....-+...+-|+.++|++++++||.+--+| .|++||+.+++......
T Consensus 407 v~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT 486 (668)
T COG4946 407 VKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT 486 (668)
T ss_pred EEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecC
Confidence 99999999999999999999999999887766667778899999999999999887665 58999999877655443
Q ss_pred cCCCceEEEEEcCCCCEEEEEE
Q 005096 310 GHKNMVLCVKWNQNGNWVLTAS 331 (715)
Q Consensus 310 ~~~~~I~sl~~spdg~~Lasgs 331 (715)
..+.-.+-+|.+|+++|..-+
T Consensus 487 -~ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 487 -PTAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred -CcccccCcccCCCCcEEEEEe
Confidence 445556788999999888655
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.5e-10 Score=121.63 Aligned_cols=277 Identities=14% Similarity=0.257 Sum_probs=192.8
Q ss_pred cEEEEEEcCCCCEEEEEeC-----------CCeEEEEeCCCCceEEEEeccC--CCEE-EEEEcCCCCEEEEEeCCCcEE
Q 005096 146 SINRVLWTPTGRRLITGSQ-----------SGEFTLWNGQSFNFEMILQAHD--HAIR-SMVWSHNDNWMVSGDDGGAIK 211 (715)
Q Consensus 146 ~I~~l~~spdg~~Latgs~-----------dg~I~Iwd~~~~~~~~~l~~h~--~~V~-~l~~spdg~~L~tgs~dg~I~ 211 (715)
.|.-+.|||+.+||+|-+. ...|+|||+.+|.+.+.+.... ..+. -+.||.|++++|.-.. ..|.
T Consensus 251 ~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sis 329 (698)
T KOG2314|consen 251 GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSIS 329 (698)
T ss_pred CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEE
Confidence 5888999999999998653 2469999999999988887633 2233 4589999999987655 5799
Q ss_pred EEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEEC-----CCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEE
Q 005096 212 YWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSD-----DTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLV 286 (715)
Q Consensus 212 iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~-----Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~ 286 (715)
||+..+..++.........|....|+|.++.||--+. -..+.+..+-+...+++..-+.-.=..+.|-.+|.+|+
T Consensus 330 IyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLc 409 (698)
T KOG2314|consen 330 IYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLC 409 (698)
T ss_pred EEecCceeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEE
Confidence 9998876666655566778999999999988875432 13577777777777776655544445677878888877
Q ss_pred EEeC----------CCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEEC---CCeEEEEECCC-C---eEEEE
Q 005096 287 SGGK----------DSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASK---DQIIKLYDIRA-M---KELES 349 (715)
Q Consensus 287 sgs~----------Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~---dg~I~iwDl~t-~---~~~~~ 349 (715)
+--. -..+.|+.++....-.........|...+|-|.|+.+++.+. ..+|.+|.+++ . +.+..
T Consensus 410 vkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~ 489 (698)
T KOG2314|consen 410 VKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKE 489 (698)
T ss_pred EEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhh
Confidence 5321 124667777655443333335677899999999988876553 35788888873 2 22333
Q ss_pred eecCCCCeEEEEEccCCCCEEEEE---eCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEEC------CC
Q 005096 350 FRGHRKDVTALAWHPFHEEYFVSG---SLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSN------DH 420 (715)
Q Consensus 350 ~~~h~~~V~~l~~sp~~~~~l~sg---s~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~------Dg 420 (715)
+ .....+.|.|+| .+.+++.+ |..|.+.++|.+.......-.. .....+.+.|.|.|+|++|++. |.
T Consensus 490 ~--dk~~~N~vfwsP-kG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~-eh~~at~veWDPtGRYvvT~ss~wrhk~d~ 565 (698)
T KOG2314|consen 490 L--DKKFANTVFWSP-KGRFVVVAALVSRRGDLEFYDTDYADLKDTASP-EHFAATEVEWDPTGRYVVTSSSSWRHKVDN 565 (698)
T ss_pred h--cccccceEEEcC-CCcEEEEEEecccccceEEEecchhhhhhccCc-cccccccceECCCCCEEEEeeehhhhcccc
Confidence 3 235678899999 67776655 4568899999875322222121 2235678999999999999986 34
Q ss_pred eEEEEec
Q 005096 421 TTKFWCR 427 (715)
Q Consensus 421 ~I~iWdl 427 (715)
-.+||++
T Consensus 566 GYri~tf 572 (698)
T KOG2314|consen 566 GYRIFTF 572 (698)
T ss_pred ceEEEEe
Confidence 4555654
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.33 E-value=5.1e-12 Score=133.61 Aligned_cols=281 Identities=14% Similarity=0.179 Sum_probs=195.0
Q ss_pred EecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCC-------CceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcE
Q 005096 138 TSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQS-------FNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAI 210 (715)
Q Consensus 138 ~~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~-------~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I 210 (715)
..+.||..+|.+++--.+.+-+++++.|.+|++|.++. ..+..++..|+..|.++.|..+.++++++ ||.|
T Consensus 729 ~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~gi 806 (1034)
T KOG4190|consen 729 CNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGI 806 (1034)
T ss_pred ecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCcc
Confidence 35789999999999888888999999999999998653 23566788999999999999888887764 7889
Q ss_pred EEEeCCCCceeeee-----cCCCCCeEEEEEecCCCE-EEEEECCCcEEEEECCCCeeEEEec-----ccCCceEEEEEc
Q 005096 211 KYWQNNMNNVKANK-----SAHKESVRDLSFCRTDLK-FCSCSDDTTVKVWDFARCQEERSLT-----GHGWDVKSVDWH 279 (715)
Q Consensus 211 ~iwd~~~~~~~~~~-----~~h~~~I~~l~~spd~~~-Las~s~Dg~V~iwdl~~~~~~~~l~-----~~~~~I~si~~s 279 (715)
.+||--.+...... .+....|.|+.-- +... ++.|+...+|+++|.+.++....++ +....++++++.
T Consensus 807 HlWDPFigr~Laq~~dapk~~a~~~ikcl~nv-~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa 885 (1034)
T KOG4190|consen 807 HLWDPFIGRLLAQMEDAPKEGAGGNIKCLENV-DRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVA 885 (1034)
T ss_pred eeecccccchhHhhhcCcccCCCceeEecccC-cchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEec
Confidence 99997666544422 1222334443221 2233 4445788999999998877665554 334568999999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEE-EECCCCeEEEEeecCCCCeE
Q 005096 280 PTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKL-YDIRAMKELESFRGHRKDVT 358 (715)
Q Consensus 280 pdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~i-wDl~t~~~~~~~~~h~~~V~ 358 (715)
+.|+.++++-.+|+|.+.|.++|+.+..++.-......++- |....|+....|..+.| |...++......+.......
T Consensus 886 ~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqlaa-psdq~L~~saldHslaVnWhaldgimh~q~kpppepah 964 (1034)
T KOG4190|consen 886 DKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLAA-PSDQALAQSALDHSLAVNWHALDGIMHLQDKPPPEPAH 964 (1034)
T ss_pred cCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhcC-chhHHHHhhcccceeEeeehhcCCeeeeccCCCCcchh
Confidence 99999999999999999999999999888755554544442 44556777777888888 87666655544442222211
Q ss_pred EEEEccCCCCEEEEEeCCCcEEEEEcCCCC----ceEEE-eeccCCCEEEEEEcCCCCEEEEEECCCeEEEE
Q 005096 359 ALAWHPFHEEYFVSGSLDGSIFHWLVGHET----PQVEI-HNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFW 425 (715)
Q Consensus 359 ~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~----~~~~~-~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iW 425 (715)
.+. .-+..|++......+.+|.-.... .+.++ .....+..++++.-|-+.-+..|.+.|.|.+.
T Consensus 965 flq---svgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~G~IaLl 1033 (1034)
T KOG4190|consen 965 FLQ---SVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHGAIALL 1033 (1034)
T ss_pred hhh---ccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccccchhhccCCCCceeec
Confidence 111 124456666666677777432111 11111 12235678888888888788888888988763
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.31 E-value=1e-08 Score=105.40 Aligned_cols=265 Identities=9% Similarity=0.124 Sum_probs=175.3
Q ss_pred CCCccEEEEEEcCCCCEEEEEeCC---CeEEEEeCCC--CceEEEE--eccCCCEEEEEEcCCCCEEEEEeC-CCcEEEE
Q 005096 142 KNRCSINRVLWTPTGRRLITGSQS---GEFTLWNGQS--FNFEMIL--QAHDHAIRSMVWSHNDNWMVSGDD-GGAIKYW 213 (715)
Q Consensus 142 ~H~~~I~~l~~spdg~~Latgs~d---g~I~Iwd~~~--~~~~~~l--~~h~~~V~~l~~spdg~~L~tgs~-dg~I~iw 213 (715)
.+...++-|+|++++++|.++..+ |.|..|.++. +++...- ......-+.+++++++++|+++.. .|.|.++
T Consensus 37 ~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~ 116 (346)
T COG2706 37 AELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVY 116 (346)
T ss_pred cccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEE
Confidence 355667889999999999988665 6677766554 4443322 122233478999999999988765 4889999
Q ss_pred eCCC-Cceee--eecCCCCC----------eEEEEEecCCCEEEEEEC-CCcEEEEECCCCeeEEEe---cccCCceEEE
Q 005096 214 QNNM-NNVKA--NKSAHKES----------VRDLSFCRTDLKFCSCSD-DTTVKVWDFARCQEERSL---TGHGWDVKSV 276 (715)
Q Consensus 214 d~~~-~~~~~--~~~~h~~~----------I~~l~~spd~~~Las~s~-Dg~V~iwdl~~~~~~~~l---~~~~~~I~si 276 (715)
-+.. +.+.. .+..|.+. +....+.|++++|++++. ...|.+|++++++....- ...+..-+.|
T Consensus 117 p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi 196 (346)
T COG2706 117 PLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHI 196 (346)
T ss_pred EcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceE
Confidence 8865 33221 12234433 788899999999988764 347999999876554321 1345667899
Q ss_pred EEcCCCCEEEEEe-CCCcEEEEECCCC-ceeEEec---------cCCCceEEEEEcCCCCEEEEEEC-CCeEEEEECCC-
Q 005096 277 DWHPTKSLLVSGG-KDSLVKLWDAKSG-RELCSFH---------GHKNMVLCVKWNQNGNWVLTASK-DQIIKLYDIRA- 343 (715)
Q Consensus 277 ~~spdg~~L~sgs-~Dg~I~iwDl~s~-~~~~~~~---------~~~~~I~sl~~spdg~~Lasgs~-dg~I~iwDl~t- 343 (715)
.|+|++++..+.+ -+++|.+|+.+.. ..+..+. ....+...|.+++||++|+++.. ...|.+|.+..
T Consensus 197 ~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~ 276 (346)
T COG2706 197 VFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPD 276 (346)
T ss_pred EEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCC
Confidence 9999999877665 4889999988763 2222222 13456788999999999998763 23677777653
Q ss_pred -CeE--EEEeecCCCCeEEEEEccCCCCEEEEEeCC-CcEEEEEcCCCCceEEEee--ccCCCEEEEEEc
Q 005096 344 -MKE--LESFRGHRKDVTALAWHPFHEEYFVSGSLD-GSIFHWLVGHETPQVEIHN--VHDNTVWDLAWH 407 (715)
Q Consensus 344 -~~~--~~~~~~h~~~V~~l~~sp~~~~~l~sgs~D-G~I~iwd~~~~~~~~~~~~--~h~~~V~~l~~s 407 (715)
++. +.....+...-+...+++ ++++|+++..| ..|.+|.++...-.+.... .......|+.|.
T Consensus 277 ~g~L~~~~~~~teg~~PR~F~i~~-~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~~~~p~Pvcv~f~ 345 (346)
T COG2706 277 GGKLELVGITPTEGQFPRDFNINP-SGRFLIAANQKSDNITVFERDKETGRLTLLGRYAVVPEPVCVKFL 345 (346)
T ss_pred CCEEEEEEEeccCCcCCccceeCC-CCCEEEEEccCCCcEEEEEEcCCCceEEecccccCCCCcEEEEEc
Confidence 322 222233444578889999 66766666544 5699998876554444332 223345566653
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.3e-11 Score=145.63 Aligned_cols=202 Identities=19% Similarity=0.329 Sum_probs=165.5
Q ss_pred EEecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEec-cCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005096 137 HTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQA-HDHAIRSMVWSHNDNWMVSGDDGGAIKYWQN 215 (715)
Q Consensus 137 ~~~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~-h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~ 215 (715)
...++.+-..|.++.=+|...+.+||+.||.|++|....+..+..++. -...|+.+.|+.+|+.+.++..||.+.+|..
T Consensus 2201 ~~~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~ 2280 (2439)
T KOG1064|consen 2201 SVMIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQA 2280 (2439)
T ss_pred eeEeecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeeccc
Confidence 345666778899999999999999999999999999888777766653 3478999999999999999999999999998
Q ss_pred CCCceeeeecCCCCCeEEEEEecCCCEEEEEE---CCCcEEEEECCC-CeeEEEecccCCceEEEEEcCCCCEEEEEeCC
Q 005096 216 NMNNVKANKSAHKESVRDLSFCRTDLKFCSCS---DDTTVKVWDFAR-CQEERSLTGHGWDVKSVDWHPTKSLLVSGGKD 291 (715)
Q Consensus 216 ~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s---~Dg~V~iwdl~~-~~~~~~l~~~~~~I~si~~spdg~~L~sgs~D 291 (715)
. .+.....+.|.....++.|.. ..+++++ +++.+.+||..- ......-..|...++++++-|...+|++|+.+
T Consensus 2281 ~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~ 2357 (2439)
T KOG1064|consen 2281 S-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRK 2357 (2439)
T ss_pred C-CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCc
Confidence 7 555666788998888888875 5566654 478999999732 11222227899999999999999999999999
Q ss_pred CcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEee
Q 005096 292 SLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFR 351 (715)
Q Consensus 292 g~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~ 351 (715)
|.|++||++..+.+..+.. +. ...+|++++..|.|+||++.....+.++.
T Consensus 2358 G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2358 GEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred CcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEEccccchhhcCc
Confidence 9999999998777766653 44 56789999999999999999877776664
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.7e-11 Score=133.95 Aligned_cols=285 Identities=20% Similarity=0.360 Sum_probs=198.5
Q ss_pred CCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCC-CceEEEEecc-CCCEEEEEEcCCC--CEEEEEeCCCcEEEEeCCC-
Q 005096 143 NRCSINRVLWTPTGRRLITGSQSGEFTLWNGQS-FNFEMILQAH-DHAIRSMVWSHND--NWMVSGDDGGAIKYWQNNM- 217 (715)
Q Consensus 143 H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~-~~~~~~l~~h-~~~V~~l~~spdg--~~L~tgs~dg~I~iwd~~~- 217 (715)
-.+.+.++.++|.|+-+|.++.-| +.|.|+.. +...+-+..- .-.|-.+.|++.. .+-++......-.||++..
T Consensus 23 v~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~s 101 (1081)
T KOG0309|consen 23 VDGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKS 101 (1081)
T ss_pred ecCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcC
Confidence 356788999999999999999988 66677664 3333322211 2236677887753 3445555556667898754
Q ss_pred --CceeeeecCCCCCeEEEEEecCC-CEEEEEECCCcEEEEECCCCe-eEEEecccCCceEEEEEcCCCCEEEEEeCCCc
Q 005096 218 --NNVKANKSAHKESVRDLSFCRTD-LKFCSCSDDTTVKVWDFARCQ-EERSLTGHGWDVKSVDWHPTKSLLVSGGKDSL 293 (715)
Q Consensus 218 --~~~~~~~~~h~~~I~~l~~spd~-~~Las~s~Dg~V~iwdl~~~~-~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~ 293 (715)
..+...+.+|...|+++.|.+.. ..+++++.|..|..||+++-. .+..+..-......|+|+-....+++.+..+.
T Consensus 102 s~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~ 181 (1081)
T KOG0309|consen 102 SSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGND 181 (1081)
T ss_pred CccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCc
Confidence 34566778999999999999865 568999999999999997643 34455555566788999876666666777788
Q ss_pred EEEEECCCC-ceeEEeccCCCceEEEEEcC-CCCEEEEEECCCeEEEEECCCCeEEEE-eecCCCCeEEEEEccCCCCEE
Q 005096 294 VKLWDAKSG-RELCSFHGHKNMVLCVKWNQ-NGNWVLTASKDQIIKLYDIRAMKELES-FRGHRKDVTALAWHPFHEEYF 370 (715)
Q Consensus 294 I~iwDl~s~-~~~~~~~~~~~~I~sl~~sp-dg~~Lasgs~dg~I~iwDl~t~~~~~~-~~~h~~~V~~l~~sp~~~~~l 370 (715)
|++||++.+ ..+..+++|...|..+.|+. ....+.+++.|++|++||..+...... ....+..|..-++.|.++.++
T Consensus 182 i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~ 261 (1081)
T KOG0309|consen 182 IFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYC 261 (1081)
T ss_pred eEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeE
Confidence 999999975 46777888888999999876 335688899999999999875433222 222334455555555443333
Q ss_pred EEE----------eCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCC----------CCEEEEEECCCeEEEEecC
Q 005096 371 VSG----------SLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPI----------GYLLCSGSNDHTTKFWCRN 428 (715)
Q Consensus 371 ~sg----------s~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd----------g~~L~sgs~Dg~I~iWdl~ 428 (715)
+-- .-+.....|++.+....+..+.+|++.|....|-.. ...|+|-+.|..+++|-++
T Consensus 262 ~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~ 339 (1081)
T KOG0309|consen 262 IMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPID 339 (1081)
T ss_pred eccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeecc
Confidence 221 122233445555566666777889998877766432 2479999999999999875
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.30 E-value=5.6e-11 Score=118.45 Aligned_cols=277 Identities=18% Similarity=0.313 Sum_probs=181.0
Q ss_pred CCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc-----eEEEEeccC------------CCEEEEEEcCCC--CEEEE
Q 005096 143 NRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFN-----FEMILQAHD------------HAIRSMVWSHND--NWMVS 203 (715)
Q Consensus 143 H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~-----~~~~l~~h~------------~~V~~l~~spdg--~~L~t 203 (715)
..+.|+++.|...|.+|++|...|.|.+|..+... ....++.|+ ..|..|.|..++ +.++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 45679999999999999999999999999755432 233344543 467889998764 46677
Q ss_pred EeCCCcEEEEeCCCCceeeeecC-CCCCeEEEEEecCCC-------EEEEEEC-CCcEEEEECCCCeeEEEe-cccCCce
Q 005096 204 GDDGGAIKYWQNNMNNVKANKSA-HKESVRDLSFCRTDL-------KFCSCSD-DTTVKVWDFARCQEERSL-TGHGWDV 273 (715)
Q Consensus 204 gs~dg~I~iwd~~~~~~~~~~~~-h~~~I~~l~~spd~~-------~Las~s~-Dg~V~iwdl~~~~~~~~l-~~~~~~I 273 (715)
.+.|.+|++|.+....+...... ..+. +.+--.|. .+--++. |..|.. +..+.. ..|..-|
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~---~~~~~~g~~~s~~~l~lprls~hd~iiaa------~p~rvyaNaH~yhi 175 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDS---FHSPMGGPLTSTKELLLPRLSEHDEIIAA------KPCRVYANAHPYHI 175 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccc---cccccCCCcCCHHHhhcccccccceEEEe------ccceeccccceeEe
Confidence 78899999999876543322111 0010 00000110 0000011 111111 111112 4577889
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCc---eeEEeccCC-----CceEEEEEcC-CCCEEEEEECCCeEEEEECCCC
Q 005096 274 KSVDWHPTKSLLVSGGKDSLVKLWDAKSGR---ELCSFHGHK-----NMVLCVKWNQ-NGNWVLTASKDQIIKLYDIRAM 344 (715)
Q Consensus 274 ~si~~spdg~~L~sgs~Dg~I~iwDl~s~~---~~~~~~~~~-----~~I~sl~~sp-dg~~Lasgs~dg~I~iwDl~t~ 344 (715)
.+|.|+.|...++++ +|-.|.+|+++--. .+..++.|. ..|++..|+| ..+.+...+..|.|++-|+|..
T Consensus 176 NSiS~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~ 254 (460)
T COG5170 176 NSISFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQS 254 (460)
T ss_pred eeeeecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhh
Confidence 999999988877765 56789999886422 223333333 4588999999 4567778888999999999843
Q ss_pred eEE----------------EEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccC----------
Q 005096 345 KEL----------------ESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHD---------- 398 (715)
Q Consensus 345 ~~~----------------~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~---------- 398 (715)
... .-+..-.+.|..+.|++ ++++|++-+.- +|+|||++..+..+.....|.
T Consensus 255 alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~-ngryIlsRdyl-tvkiwDvnm~k~pikTi~~h~~l~~~l~d~Y 332 (460)
T COG5170 255 ALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSD-NGRYILSRDYL-TVKIWDVNMAKNPIKTIPMHCDLMDELNDVY 332 (460)
T ss_pred hhccCchhhhhhccCcccchhHHHHhhhhcceEEcC-CCcEEEEeccc-eEEEEecccccCCceeechHHHHHHHHHhhh
Confidence 211 11223345788999998 88888876654 899999998877666553332
Q ss_pred --CCE---EEEEEcCCCCEEEEEECCCeEEEEecCCCC
Q 005096 399 --NTV---WDLAWHPIGYLLCSGSNDHTTKFWCRNRPG 431 (715)
Q Consensus 399 --~~V---~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~ 431 (715)
..| ..+.|+.|.+.+.+|+..+..-||-....+
T Consensus 333 EnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~~ssg 370 (460)
T COG5170 333 ENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPTDSSG 370 (460)
T ss_pred hccceeeeEEEEecCCcccccccccccceeeeccccCC
Confidence 223 357889999999999999998888755433
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.30 E-value=3e-10 Score=112.92 Aligned_cols=226 Identities=13% Similarity=0.114 Sum_probs=160.3
Q ss_pred CCCcEEEEeCCCCceee---eecCCCCCeEEEEEec---CCC-EEEEEECCCcEEEEECCCCeeEEEecccCC------c
Q 005096 206 DGGAIKYWQNNMNNVKA---NKSAHKESVRDLSFCR---TDL-KFCSCSDDTTVKVWDFARCQEERSLTGHGW------D 272 (715)
Q Consensus 206 ~dg~I~iwd~~~~~~~~---~~~~h~~~I~~l~~sp---d~~-~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~------~ 272 (715)
..|.+.+|+++..+... ........+..+.|+. ++. .++-+..+|.|.++..........+.+-.. .
T Consensus 44 R~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~ 123 (339)
T KOG0280|consen 44 RSGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVE 123 (339)
T ss_pred eccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhhee
Confidence 34678888877654432 2233445667777764 344 466677789999998765555444443221 2
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCcee--EEeccCCCceEEEEEcC-CCCEEEEEECCCeEEEEECC-CCeEEE
Q 005096 273 VKSVDWHPTKSLLVSGGKDSLVKLWDAKSGREL--CSFHGHKNMVLCVKWNQ-NGNWVLTASKDQIIKLYDIR-AMKELE 348 (715)
Q Consensus 273 I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~--~~~~~~~~~I~sl~~sp-dg~~Lasgs~dg~I~iwDl~-t~~~~~ 348 (715)
..++.|+..+..++++..+|.+.+.+....... ..++.|..+++..+|+. +.+++++|+.|+.+..||+| .++.+.
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~ 203 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIW 203 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceee
Confidence 457889988889999999999997766655443 37889999999999987 45789999999999999999 444444
Q ss_pred E-eecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCc-eEEEeeccCCCEEEEEEcCCC-CEEEEEECCCeEEEE
Q 005096 349 S-FRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETP-QVEIHNVHDNTVWDLAWHPIG-YLLCSGSNDHTTKFW 425 (715)
Q Consensus 349 ~-~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~-~~~~~~~h~~~V~~l~~spdg-~~L~sgs~Dg~I~iW 425 (715)
. .+.|...|.+|.-++....+|++|++|-.|++||.++-.+ +.... -.+.|+.+.+++.- ..|+.++.-+-++|-
T Consensus 204 ~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~--v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~ 281 (339)
T KOG0280|consen 204 HNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK--VGGGVWRIKHHPEIFHRLLAACMHNGAKIL 281 (339)
T ss_pred ecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCc--cccceEEEEecchhhhHHHHHHHhcCceEE
Confidence 4 5679999999999998889999999999999999985443 33322 24789999999863 233333334446666
Q ss_pred ecCCCCCc
Q 005096 426 CRNRPGDT 433 (715)
Q Consensus 426 dl~~~~~~ 433 (715)
+.+....+
T Consensus 282 ~~~~~~~e 289 (339)
T KOG0280|consen 282 DSSDKVLE 289 (339)
T ss_pred Eecccccc
Confidence 66544333
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.4e-10 Score=124.55 Aligned_cols=245 Identities=14% Similarity=0.223 Sum_probs=175.1
Q ss_pred EEEEecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEE--eccCCCEEEEEEcCCCCEEEEEeCCCcEEE
Q 005096 135 FVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMIL--QAHDHAIRSMVWSHNDNWMVSGDDGGAIKY 212 (715)
Q Consensus 135 ~~~~~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l--~~h~~~V~~l~~spdg~~L~tgs~dg~I~i 212 (715)
.+..+|.||+..|.-+.|+.+...|-+...+|.|.||-+-++...... ....+.|.+++|+.||..|+....||.|.|
T Consensus 62 smNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIV 141 (1189)
T KOG2041|consen 62 SMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIV 141 (1189)
T ss_pred chhhhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEE
Confidence 356789999999999999999999999999999999987766543222 234567899999999999999999999988
Q ss_pred EeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCe-------eE----EEecccCCceEEEEEc--
Q 005096 213 WQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQ-------EE----RSLTGHGWDVKSVDWH-- 279 (715)
Q Consensus 213 wd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~-------~~----~~l~~~~~~I~si~~s-- 279 (715)
=.++.++... ......-...+.|++|.+.++.+-.+|.+.++|....- +. ..+......|..+.|.
T Consensus 142 GsvdGNRIwg-KeLkg~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g 220 (1189)
T KOG2041|consen 142 GSVDGNRIWG-KELKGQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTG 220 (1189)
T ss_pred Eeeccceecc-hhcchheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccC
Confidence 7776544322 12222334578899999998888899999999974321 11 1122233447777775
Q ss_pred ------CCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCC---------eEEEEECCCC
Q 005096 280 ------PTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQ---------IIKLYDIRAM 344 (715)
Q Consensus 280 ------pdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg---------~I~iwDl~t~ 344 (715)
||...|+++..+|.+.|-.-.+......+. ..-.|..+.|+++|..|++++.+. .|.+|.. -|
T Consensus 221 ~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~d-tgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp-~G 298 (1189)
T KOG2041|consen 221 PYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVD-TGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSP-YG 298 (1189)
T ss_pred ccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEe-cccEeecceecCCCcEEEEccCcccccCccccceEEEecc-ch
Confidence 366789999999999887554433333333 236689999999999999987543 4555554 47
Q ss_pred eEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEc
Q 005096 345 KELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLV 384 (715)
Q Consensus 345 ~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~ 384 (715)
+.+.+++.....|++++|-. .+-.++. ..|+.|++=++
T Consensus 299 ~i~gtlkvpg~~It~lsWEg-~gLriA~-AvdsfiyfanI 336 (1189)
T KOG2041|consen 299 HIVGTLKVPGSCITGLSWEG-TGLRIAI-AVDSFIYFANI 336 (1189)
T ss_pred hheEEEecCCceeeeeEEcC-CceEEEE-EecceEEEEee
Confidence 88899999999999999975 3323332 23445544433
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.4e-08 Score=104.31 Aligned_cols=269 Identities=12% Similarity=0.139 Sum_probs=182.6
Q ss_pred CCeEEEEeCCCCce---EEEEeccCCCEEEEEEcCCCCEEEEEeC---CCcEEEEeCCC--Ccee--eeecCCCCCeEEE
Q 005096 165 SGEFTLWNGQSFNF---EMILQAHDHAIRSMVWSHNDNWMVSGDD---GGAIKYWQNNM--NNVK--ANKSAHKESVRDL 234 (715)
Q Consensus 165 dg~I~Iwd~~~~~~---~~~l~~h~~~V~~l~~spdg~~L~tgs~---dg~I~iwd~~~--~~~~--~~~~~h~~~I~~l 234 (715)
+.-|++|++++..- ...+-...+..+-|+|+++.++|.++.. +|.|..|.++. +++. .........-+.+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 34599999874221 1122345678899999999999988754 47788777765 4332 2222233344889
Q ss_pred EEecCCCEEEEEEC-CCcEEEEECCC-CeeEE--EecccCCc----------eEEEEEcCCCCEEEEEeC-CCcEEEEEC
Q 005096 235 SFCRTDLKFCSCSD-DTTVKVWDFAR-CQEER--SLTGHGWD----------VKSVDWHPTKSLLVSGGK-DSLVKLWDA 299 (715)
Q Consensus 235 ~~spd~~~Las~s~-Dg~V~iwdl~~-~~~~~--~l~~~~~~----------I~si~~spdg~~L~sgs~-Dg~I~iwDl 299 (715)
++++++++|+++.. .|.|.++-+.+ +.... .+..|.+. +....++|++++|++.+. ...|.+|++
T Consensus 95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~ 174 (346)
T COG2706 95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDL 174 (346)
T ss_pred EECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEc
Confidence 99999999988876 57899999855 33221 12224433 788999999999888764 346999999
Q ss_pred CCCceeEEe---ccCCCceEEEEEcCCCCEEEEEE-CCCeEEEEECCCC-eEEEEee---------cCCCCeEEEEEccC
Q 005096 300 KSGRELCSF---HGHKNMVLCVKWNQNGNWVLTAS-KDQIIKLYDIRAM-KELESFR---------GHRKDVTALAWHPF 365 (715)
Q Consensus 300 ~s~~~~~~~---~~~~~~I~sl~~spdg~~Lasgs-~dg~I~iwDl~t~-~~~~~~~---------~h~~~V~~l~~sp~ 365 (715)
..++....- ......-+.|.|+|++++.++.+ .+++|.+|+.... ..+..+. ........|.+++
T Consensus 175 ~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~- 253 (346)
T COG2706 175 DDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISP- 253 (346)
T ss_pred ccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECC-
Confidence 977543221 12445678999999999988766 5889999998763 2222222 1234577889999
Q ss_pred CCCEEEEEeC-CCcEEEEEcCCCCceEEEe---eccCCCEEEEEEcCCCCEEEEEECC-CeEEEEecCCCCCcc
Q 005096 366 HEEYFVSGSL-DGSIFHWLVGHETPQVEIH---NVHDNTVWDLAWHPIGYLLCSGSND-HTTKFWCRNRPGDTA 434 (715)
Q Consensus 366 ~~~~l~sgs~-DG~I~iwd~~~~~~~~~~~---~~h~~~V~~l~~spdg~~L~sgs~D-g~I~iWdl~~~~~~~ 434 (715)
++++|.++.. ...|.+|.++.......+. ..+...-.++.|++++++|+++..| ..|.+|.++...-..
T Consensus 254 dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L 327 (346)
T COG2706 254 DGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRL 327 (346)
T ss_pred CCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceE
Confidence 7888777653 3478888887664444433 2233346789999999999888764 579999987654444
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.2e-10 Score=117.83 Aligned_cols=235 Identities=19% Similarity=0.324 Sum_probs=155.5
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc-----eeeeecCC------------CCCeEEEEEecCC--CEEEEE
Q 005096 186 DHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNN-----VKANKSAH------------KESVRDLSFCRTD--LKFCSC 246 (715)
Q Consensus 186 ~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~-----~~~~~~~h------------~~~I~~l~~spd~--~~Las~ 246 (715)
...|.+|.|..+|++|+||+.+|.|.++.-+... ....+..| ...|..+.|..++ ..++..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 4568899999999999999999999999644322 22223222 3568889999866 457788
Q ss_pred ECCCcEEEEECCCCeeEEE---e--cccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEe-ccCCCceEEEEE
Q 005096 247 SDDTTVKVWDFARCQEERS---L--TGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSF-HGHKNMVLCVKW 320 (715)
Q Consensus 247 s~Dg~V~iwdl~~~~~~~~---l--~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~-~~~~~~I~sl~~ 320 (715)
+.|.+|++|.+........ + .+....|+++. +.+.+..|-.+. ..+.+.+ ..|..-|++|++
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr------~p~~~~~~~~ve------a~prRv~aNaHtyhiNSIS~ 172 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLR------LPVEGRHDLEVE------ASPRRVYANAHTYHINSISV 172 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCccceee------ceeeccccceee------eeeeeeccccceeEeeeeee
Confidence 8999999999865333220 0 00111122221 111111111111 1122222 457888999999
Q ss_pred cCCCCEEEEEECCCeEEEEECCCCeE---EEEeecC-----CCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEE
Q 005096 321 NQNGNWVLTASKDQIIKLYDIRAMKE---LESFRGH-----RKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVE 392 (715)
Q Consensus 321 spdg~~Lasgs~dg~I~iwDl~t~~~---~~~~~~h-----~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~ 392 (715)
+.|...++++. |-.|.+|+++-... +..++.+ ..-|++..|+|...++|+..+..|+|++.|++....+..
T Consensus 173 NsD~Et~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~ 251 (433)
T KOG1354|consen 173 NSDKETFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDA 251 (433)
T ss_pred cCccceEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcc
Confidence 99999888774 88999999874332 2222322 245889999998899999999999999999984322211
Q ss_pred ---------------EeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCCCCCcc
Q 005096 393 ---------------IHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGDTA 434 (715)
Q Consensus 393 ---------------~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~~~~ 434 (715)
++..--..|.++.|+.+|+++++-+. -+|+|||++.+.+..
T Consensus 252 hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv 307 (433)
T KOG1354|consen 252 HSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPV 307 (433)
T ss_pred hhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcc
Confidence 11112246889999999999987653 689999998776644
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.28 E-value=4e-09 Score=112.31 Aligned_cols=237 Identities=8% Similarity=0.021 Sum_probs=154.4
Q ss_pred EcCCCCEEEEEeC----------CCeEEEEeCCCCceEEEEeccCC-------CEEEEEEcCCCCEEEEEe-C-CCcEEE
Q 005096 152 WTPTGRRLITGSQ----------SGEFTLWNGQSFNFEMILQAHDH-------AIRSMVWSHNDNWMVSGD-D-GGAIKY 212 (715)
Q Consensus 152 ~spdg~~Latgs~----------dg~I~Iwd~~~~~~~~~l~~h~~-------~V~~l~~spdg~~L~tgs-~-dg~I~i 212 (715)
+|+|++.|+++.. +..|.|||..+.+.+..+..-.. ....+++++||++|++.. . +..|.|
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~V 132 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGV 132 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEE
Confidence 9999999887765 68899999999999988875322 234789999999998776 3 689999
Q ss_pred EeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCC-CeeE-E---EecccCCceE-EEEEcC-CCCEE
Q 005096 213 WQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFAR-CQEE-R---SLTGHGWDVK-SVDWHP-TKSLL 285 (715)
Q Consensus 213 wd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~-~~~~-~---~l~~~~~~I~-si~~sp-dg~~L 285 (715)
+|+.+++.+..+..-. ...-+..+ +...+ +-+.||......+++ ++.. . .+......+. .-.|.+ +++++
T Consensus 133 vD~~~~kvv~ei~vp~-~~~vy~t~-e~~~~-~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~ 209 (352)
T TIGR02658 133 VDLEGKAFVRMMDVPD-CYHIFPTA-NDTFF-MHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLV 209 (352)
T ss_pred EECCCCcEEEEEeCCC-CcEEEEec-CCccE-EEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEE
Confidence 9999999888775422 22222222 22222 223444444433322 1111 1 1111000000 003344 77777
Q ss_pred EEEeCCCcEEEEECCCC-----ceeEEecc-------CCCceEEEEEcCCCCEEEEEE----------CCCeEEEEECCC
Q 005096 286 VSGGKDSLVKLWDAKSG-----RELCSFHG-------HKNMVLCVKWNQNGNWVLTAS----------KDQIIKLYDIRA 343 (715)
Q Consensus 286 ~sgs~Dg~I~iwDl~s~-----~~~~~~~~-------~~~~I~sl~~spdg~~Lasgs----------~dg~I~iwDl~t 343 (715)
++..+ |.|.+.|+... +.+..+.. ....+.-++++++++.|++.. ..+.|.++|..+
T Consensus 210 ~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t 288 (352)
T TIGR02658 210 WPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKT 288 (352)
T ss_pred EEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCC
Confidence 77766 99999996543 22222211 122344599999999888853 125799999999
Q ss_pred CeEEEEeecCCCCeEEEEEccCCCCEEEEEe-CCCcEEEEEcCCCCceEEE
Q 005096 344 MKELESFRGHRKDVTALAWHPFHEEYFVSGS-LDGSIFHWLVGHETPQVEI 393 (715)
Q Consensus 344 ~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs-~DG~I~iwd~~~~~~~~~~ 393 (715)
++.+..+.. ...+..|++++++..+|++.+ .++.|.++|..+.+.+..+
T Consensus 289 ~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 289 GKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred CeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 999999874 568999999995442666555 6788999999888766665
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.27 E-value=8.8e-10 Score=121.47 Aligned_cols=289 Identities=13% Similarity=0.171 Sum_probs=196.9
Q ss_pred EecCCCCccEEEEEEcCCC------------CEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcC---CC-CEE
Q 005096 138 TSLNKNRCSINRVLWTPTG------------RRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSH---ND-NWM 201 (715)
Q Consensus 138 ~~l~~H~~~I~~l~~spdg------------~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~sp---dg-~~L 201 (715)
.++..|...|+.|.|.|.. -+||++...|.|.|||......+..+..|...|..++|-+ +. ..|
T Consensus 49 qsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~L 128 (1062)
T KOG1912|consen 49 QSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVL 128 (1062)
T ss_pred hccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchhee
Confidence 3577899999999998732 2567788889999999999999999999999999999965 23 456
Q ss_pred EEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEec-CCCEEEEEECCCcEEEEEC-----------------------
Q 005096 202 VSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCR-TDLKFCSCSDDTTVKVWDF----------------------- 257 (715)
Q Consensus 202 ~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp-d~~~Las~s~Dg~V~iwdl----------------------- 257 (715)
++-....+|.+|+..+|+....+........|+.+.| |.+.++..+..|.|.+.+.
T Consensus 129 laIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~ 208 (1062)
T KOG1912|consen 129 LAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLA 208 (1062)
T ss_pred EEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchh
Confidence 6666678999999999988877766666666677766 3445555555555544433
Q ss_pred ---------------------------------------------------CCCeeEEEecccCCceEEEEEcCCC--CE
Q 005096 258 ---------------------------------------------------ARCQEERSLTGHGWDVKSVDWHPTK--SL 284 (715)
Q Consensus 258 ---------------------------------------------------~~~~~~~~l~~~~~~I~si~~spdg--~~ 284 (715)
+-...+..+.-..+.+.-+.|-|+. ..
T Consensus 209 ~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~ 288 (1062)
T KOG1912|consen 209 HLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDA 288 (1062)
T ss_pred hhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCCCcce
Confidence 1111111111222334445565654 47
Q ss_pred EEEEeCCCcEEEEECCC----------------Cce---eEEec------------------------------------
Q 005096 285 LVSGGKDSLVKLWDAKS----------------GRE---LCSFH------------------------------------ 309 (715)
Q Consensus 285 L~sgs~Dg~I~iwDl~s----------------~~~---~~~~~------------------------------------ 309 (715)
|++.-.||.+.||-.+. ++. ++.++
T Consensus 289 LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri 368 (1062)
T KOG1912|consen 289 LFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRI 368 (1062)
T ss_pred EEEEecCCeEEEEEeeccCccccccchhhccccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCc
Confidence 88888899999885433 110 11000
Q ss_pred ------------------------------------cCCCceEEEEEc-----------CCC-------CEEEEEECCCe
Q 005096 310 ------------------------------------GHKNMVLCVKWN-----------QNG-------NWVLTASKDQI 335 (715)
Q Consensus 310 ------------------------------------~~~~~I~sl~~s-----------pdg-------~~Lasgs~dg~ 335 (715)
+|....++.... +.+ .++|+|+..|+
T Consensus 369 ~~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGT 448 (1062)
T KOG1912|consen 369 HLDYRSSSIELVLPFDFNLSTKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGT 448 (1062)
T ss_pred CcccccccccccccccccCceeehhhccccchhhcCCCCCCceeeecccCcccceeecCCCCCccceeeeeEEeecCCce
Confidence 001111111111 111 25778999999
Q ss_pred EEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeC----------CCcEEEEEcCCCCceEE--EeeccCCCEEE
Q 005096 336 IKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSL----------DGSIFHWLVGHETPQVE--IHNVHDNTVWD 403 (715)
Q Consensus 336 I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~----------DG~I~iwd~~~~~~~~~--~~~~h~~~V~~ 403 (715)
|.++|+.++.....+..|...|.++.|.- ...|++.+. -+.+.|-|++++..... .....+.+|..
T Consensus 449 V~vvdvst~~v~~~fsvht~~VkgleW~g--~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~~despI~~ 526 (1062)
T KOG1912|consen 449 VDVVDVSTNAVAASFSVHTSLVKGLEWLG--NSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQKPDESPIRA 526 (1062)
T ss_pred EEEEEecchhhhhhhcccccceeeeeecc--ceeEEEeeeccccccccceeeeEEEEEcccccccccccCCCCCcCccee
Confidence 99999999999999999999999999974 444554432 23567778887754322 23445678999
Q ss_pred EEEcCCCCEEEEEECCCeEEEEecC
Q 005096 404 LAWHPIGYLLCSGSNDHTTKFWCRN 428 (715)
Q Consensus 404 l~~spdg~~L~sgs~Dg~I~iWdl~ 428 (715)
|..+..++||+..-.|.-+.+||++
T Consensus 527 irvS~~~~yLai~Fr~~plEiwd~k 551 (1062)
T KOG1912|consen 527 IRVSSSGRYLAILFRREPLEIWDLK 551 (1062)
T ss_pred eeecccCceEEEEecccchHHHhhc
Confidence 9999999999999999999999984
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=99.25 E-value=8.8e-09 Score=123.49 Aligned_cols=284 Identities=14% Similarity=0.197 Sum_probs=184.0
Q ss_pred CCccEEEEEEcCCCCEEEEEeCCCeEEEEeCC---------------C--------CceEEEEec---------------
Q 005096 143 NRCSINRVLWTPTGRRLITGSQSGEFTLWNGQ---------------S--------FNFEMILQA--------------- 184 (715)
Q Consensus 143 H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~---------------~--------~~~~~~l~~--------------- 184 (715)
-.+.|.|++||||+..|+..+.+++|.+.+.. . |+....|.+
T Consensus 119 vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~ 198 (928)
T PF04762_consen 119 VDSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTV 198 (928)
T ss_pred EcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCC
Confidence 45689999999999999999999988876411 0 011111110
Q ss_pred ---------cCCCEEEEEEcCCCCEEEEEeC---C---CcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEEC-
Q 005096 185 ---------HDHAIRSMVWSHNDNWMVSGDD---G---GAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSD- 248 (715)
Q Consensus 185 ---------h~~~V~~l~~spdg~~L~tgs~---d---g~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~- 248 (715)
.+..-..|+|--||.++|+.+. + ..|+||+-+ +.+..+-....+--.+++|.|.|++||+...
T Consensus 199 ~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~ 277 (928)
T PF04762_consen 199 PKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRL 277 (928)
T ss_pred CccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEc
Confidence 2334567899999999998764 2 578999876 5544444444444567899999999998765
Q ss_pred --CCcEEEEECCCCeeEEEe----cccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCce--eEEec-cCCCceEEEE
Q 005096 249 --DTTVKVWDFARCQEERSL----TGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRE--LCSFH-GHKNMVLCVK 319 (715)
Q Consensus 249 --Dg~V~iwdl~~~~~~~~l----~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~--~~~~~-~~~~~I~sl~ 319 (715)
...|.+|.- +|-.-..| ......|..++|+.|+.+|++...|. |.+|-..+..- ...+. .....+..+.
T Consensus 278 ~~~~~VvFfEr-NGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~ 355 (928)
T PF04762_consen 278 PDRHDVVFFER-NGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVK 355 (928)
T ss_pred CCCcEEEEEec-CCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceE
Confidence 345666663 33222222 23456799999999999999988665 99998877542 12222 1233355599
Q ss_pred EcC-CCCEEEEEECCCeEEEEECC----CC--------eEEEEee-----------------------cCCCCeEEEEEc
Q 005096 320 WNQ-NGNWVLTASKDQIIKLYDIR----AM--------KELESFR-----------------------GHRKDVTALAWH 363 (715)
Q Consensus 320 ~sp-dg~~Lasgs~dg~I~iwDl~----t~--------~~~~~~~-----------------------~h~~~V~~l~~s 363 (715)
|++ +...|.+.+.+|.+..+++. .+ ..+..+. .....|.+++|+
T Consensus 356 Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~ 435 (928)
T PF04762_consen 356 WDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFS 435 (928)
T ss_pred ECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEe
Confidence 998 44567777776766555431 11 0111111 235679999999
Q ss_pred cCCCCEEEEEeCCCcEEEEEcCCCCce--------EEE---------eeccCCCEEEEEEcCCCCEEEEEECC---CeEE
Q 005096 364 PFHEEYFVSGSLDGSIFHWLVGHETPQ--------VEI---------HNVHDNTVWDLAWHPIGYLLCSGSND---HTTK 423 (715)
Q Consensus 364 p~~~~~l~sgs~DG~I~iwd~~~~~~~--------~~~---------~~~h~~~V~~l~~spdg~~L~sgs~D---g~I~ 423 (715)
+ +...+++-..||.|.+|........ ..+ .......+..++|..+..+++....+ ..+.
T Consensus 436 ~-~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 514 (928)
T PF04762_consen 436 P-SNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIV 514 (928)
T ss_pred C-CCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEEEEecCcccceEE
Confidence 8 5666888899999999985433211 011 01123467889998888777776665 6788
Q ss_pred EEecCCC
Q 005096 424 FWCRNRP 430 (715)
Q Consensus 424 iWdl~~~ 430 (715)
++++...
T Consensus 515 ~~~~~~~ 521 (928)
T PF04762_consen 515 LVDIDDS 521 (928)
T ss_pred EEEeccC
Confidence 8887443
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.9e-11 Score=129.46 Aligned_cols=240 Identities=21% Similarity=0.347 Sum_probs=170.3
Q ss_pred EEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCC-------CceeeeecCCCCCeEEEEEecCCCEEEEEECCCc
Q 005096 179 EMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNM-------NNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTT 251 (715)
Q Consensus 179 ~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~-------~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~ 251 (715)
+..+.+|...|..++-..+.+.+++++.|++|++|.++. ..+..++..|+..|.++.|..+.++++++ |+.
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~g 805 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGG 805 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCc
Confidence 345778999999998877889999999999999998754 23667778999999999999988877765 788
Q ss_pred EEEEECCCCeeEEEec-----ccCCceEEEEEcCCCCEEEE-EeCCCcEEEEECCCCceeEEec-----cCCCceEEEEE
Q 005096 252 VKVWDFARCQEERSLT-----GHGWDVKSVDWHPTKSLLVS-GGKDSLVKLWDAKSGRELCSFH-----GHKNMVLCVKW 320 (715)
Q Consensus 252 V~iwdl~~~~~~~~l~-----~~~~~I~si~~spdg~~L~s-gs~Dg~I~iwDl~s~~~~~~~~-----~~~~~I~sl~~ 320 (715)
|.+||--.++.+.... +..+.|.|+.-- +..+++. ++...+|+++|.++.+-+..++ +.+..+++++.
T Consensus 806 iHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv-~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaV 884 (1034)
T KOG4190|consen 806 IHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENV-DRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAV 884 (1034)
T ss_pred ceeecccccchhHhhhcCcccCCCceeEecccC-cchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEe
Confidence 9999975555444221 122334444321 3344444 4778999999999987766664 33466899999
Q ss_pred cCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEE-EEcCCCCceEEEeeccCC
Q 005096 321 NQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFH-WLVGHETPQVEIHNVHDN 399 (715)
Q Consensus 321 spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~i-wd~~~~~~~~~~~~~h~~ 399 (715)
.+.|++++++-.+|+|.+.|.++|+.+..++..+.....++- | .+..|+....|.++.+ |..-.+........ ...
T Consensus 885 a~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqlaa-p-sdq~L~~saldHslaVnWhaldgimh~q~kp-ppe 961 (1034)
T KOG4190|consen 885 ADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLAA-P-SDQALAQSALDHSLAVNWHALDGIMHLQDKP-PPE 961 (1034)
T ss_pred ccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhcC-c-hhHHHHhhcccceeEeeehhcCCeeeeccCC-CCc
Confidence 999999999999999999999999999988876666655553 2 4566777777888887 76544322111110 011
Q ss_pred CEEEEEEc-CCCCEEEEEECCCeEEEEec
Q 005096 400 TVWDLAWH-PIGYLLCSGSNDHTTKFWCR 427 (715)
Q Consensus 400 ~V~~l~~s-pdg~~L~sgs~Dg~I~iWdl 427 (715)
+. -|. .-|..|+++.....+.+|.-
T Consensus 962 pa---hflqsvgpSLV~a~~Gn~lgVYad 987 (1034)
T KOG4190|consen 962 PA---HFLQSVGPSLVTAQNGNILGVYAD 987 (1034)
T ss_pred ch---hhhhccCceeEEeccCcEEEEEec
Confidence 11 111 12566888888888888853
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.24 E-value=8.6e-09 Score=125.77 Aligned_cols=239 Identities=14% Similarity=0.148 Sum_probs=160.6
Q ss_pred EEEEEcCC-CCEEEEEeCCCeEEEEeCCCCceEEEEec-c-------------CCCEEEEEEcCCCCEEEEEeC-CCcEE
Q 005096 148 NRVLWTPT-GRRLITGSQSGEFTLWNGQSFNFEMILQA-H-------------DHAIRSMVWSHNDNWMVSGDD-GGAIK 211 (715)
Q Consensus 148 ~~l~~spd-g~~Latgs~dg~I~Iwd~~~~~~~~~l~~-h-------------~~~V~~l~~spdg~~L~tgs~-dg~I~ 211 (715)
..++++.+ ++++++-+.++.|++||... +.+..+.. . -..-..|+++++++.|++++. ++.|+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G-~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir 649 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDG-NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR 649 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCC-CEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence 36788875 55666667788899999764 44433332 1 113478899988887766654 57799
Q ss_pred EEeCCCCceeeeecC---------C-------CCCeEEEEEec-CCCEEEEEECCCcEEEEECCCCeeEEEeccc-----
Q 005096 212 YWQNNMNNVKANKSA---------H-------KESVRDLSFCR-TDLKFCSCSDDTTVKVWDFARCQEERSLTGH----- 269 (715)
Q Consensus 212 iwd~~~~~~~~~~~~---------h-------~~~I~~l~~sp-d~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~----- 269 (715)
++|+.++........ . -..-.++++++ ++..+++.+.++.|++||..++... .+.+.
T Consensus 650 ~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~~ 728 (1057)
T PLN02919 650 EIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYERN 728 (1057)
T ss_pred EEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCcccc
Confidence 999877654322110 0 11335789998 4555666677899999998776443 22111
Q ss_pred ----------CCceEEEEEcCCCCEE-EEEeCCCcEEEEECCCCceeEEecc-------------C--------CCceEE
Q 005096 270 ----------GWDVKSVDWHPTKSLL-VSGGKDSLVKLWDAKSGRELCSFHG-------------H--------KNMVLC 317 (715)
Q Consensus 270 ----------~~~I~si~~spdg~~L-~sgs~Dg~I~iwDl~s~~~~~~~~~-------------~--------~~~I~s 317 (715)
......|+|+++++.| ++-+.++.|++||++++.......+ . -..-..
T Consensus 729 ~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~G 808 (1057)
T PLN02919 729 LNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLG 808 (1057)
T ss_pred CCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCce
Confidence 1234579999999844 4555678999999987653211100 0 112358
Q ss_pred EEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeec-------------CCCCeEEEEEccCCCCEEEEEeCCCcEEEEEc
Q 005096 318 VKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRG-------------HRKDVTALAWHPFHEEYFVSGSLDGSIFHWLV 384 (715)
Q Consensus 318 l~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~-------------h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~ 384 (715)
++++++|+++++-+.+++|++||..++........ .-.....|++++ +++++++.+.+++|++||+
T Consensus 809 vavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~-dG~lyVaDt~Nn~Irvid~ 887 (1057)
T PLN02919 809 VLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGE-NGRLFVADTNNSLIRYLDL 887 (1057)
T ss_pred eeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeC-CCCEEEEECCCCEEEEEEC
Confidence 89999999888888899999999988766533211 113567899998 6788888899999999999
Q ss_pred CCCCc
Q 005096 385 GHETP 389 (715)
Q Consensus 385 ~~~~~ 389 (715)
++...
T Consensus 888 ~~~~~ 892 (1057)
T PLN02919 888 NKGEA 892 (1057)
T ss_pred CCCcc
Confidence 87654
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.5e-09 Score=106.52 Aligned_cols=209 Identities=10% Similarity=0.041 Sum_probs=149.3
Q ss_pred CCEEEEEeCCCeEEEEeCCCCc-eEEEEeccCCCEEEEEEcCC-CCEEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEE
Q 005096 156 GRRLITGSQSGEFTLWNGQSFN-FEMILQAHDHAIRSMVWSHN-DNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRD 233 (715)
Q Consensus 156 g~~Latgs~dg~I~Iwd~~~~~-~~~~l~~h~~~V~~l~~spd-g~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~ 233 (715)
..+||.|+..|.+.+|...+.+ ..+....|...|+-+.-..| .-.+..++.|.++++.+++.+..........-.+.+
T Consensus 84 c~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns 163 (344)
T KOG4532|consen 84 CVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNS 163 (344)
T ss_pred ccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccccceee
Confidence 4579999999999999988654 34444555554443322112 335667889999999988776555444333345889
Q ss_pred EEEecCCCEEEEEECCCcEEEEECCCCee--EE-EecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEE---
Q 005096 234 LSFCRTDLKFCSCSDDTTVKVWDFARCQE--ER-SLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCS--- 307 (715)
Q Consensus 234 l~~spd~~~Las~s~Dg~V~iwdl~~~~~--~~-~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~--- 307 (715)
+++++|++++++.++...|..|.+.+..+ ++ ......+.-.+..|+.....+|++..||++.|||++.......
T Consensus 164 ~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~s 243 (344)
T KOG4532|consen 164 LHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEIS 243 (344)
T ss_pred eEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhc
Confidence 99999999999999999999999854322 22 2233445567889999999999999999999999997543322
Q ss_pred --eccCCCceEEEEEcCCC--CEEEEEECCCeEEEEECCCCeEEEEeecCCC--------CeEEEEEcc
Q 005096 308 --FHGHKNMVLCVKWNQNG--NWVLTASKDQIIKLYDIRAMKELESFRGHRK--------DVTALAWHP 364 (715)
Q Consensus 308 --~~~~~~~I~sl~~spdg--~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~--------~V~~l~~sp 364 (715)
-..|++.++.+.|++.| ++|+..-.-+.+.|.|+|+++....+...+. .|..-.|+.
T Consensus 244 strp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~ 312 (344)
T KOG4532|consen 244 STRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNN 312 (344)
T ss_pred ccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccC
Confidence 23578899999999855 4566666678999999999887665543222 266666665
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.22 E-value=5.4e-11 Score=140.66 Aligned_cols=197 Identities=19% Similarity=0.312 Sum_probs=159.5
Q ss_pred eccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeec-CCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCe
Q 005096 183 QAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKS-AHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQ 261 (715)
Q Consensus 183 ~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~-~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~ 261 (715)
+.+-..|.++.-++..-+.+||+.||.|++|....+..+..+. .....|+.+.|+.+|+.+.++..||.+.+|.+. .+
T Consensus 2205 k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk 2283 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PK 2283 (2439)
T ss_pred ecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-Cc
Confidence 3345678888888888999999999999999988776555443 344789999999999999999999999999987 56
Q ss_pred eEEEecccCCceEEEEEcCCCCEEEEEe---CCCcEEEEECCC--CceeEEeccCCCceEEEEEcCCCCEEEEEECCCeE
Q 005096 262 EERSLTGHGWDVKSVDWHPTKSLLVSGG---KDSLVKLWDAKS--GRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQII 336 (715)
Q Consensus 262 ~~~~l~~~~~~I~si~~spdg~~L~sgs---~Dg~I~iwDl~s--~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I 336 (715)
.......|.....++.|-. ..+++++ +++.+.+||..- .+.+.. +.|...++++++.|.-.+|++|+.+|.|
T Consensus 2284 ~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~-~~H~~gaT~l~~~P~~qllisggr~G~v 2360 (2439)
T KOG1064|consen 2284 PYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH-TCHDGGATVLAYAPKHQLLISGGRKGEV 2360 (2439)
T ss_pred ceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee-eecCCCceEEEEcCcceEEEecCCcCcE
Confidence 6677778888888888874 6666654 578899999753 222222 7799999999999999999999999999
Q ss_pred EEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEe
Q 005096 337 KLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIH 394 (715)
Q Consensus 337 ~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~ 394 (715)
+|||++..+.+..+.. ++ ...+|++++..|.|+||++..-..+..+.
T Consensus 2361 ~l~D~rqrql~h~~~~---------~~--~~~~f~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2361 CLFDIRQRQLRHTFQA---------LD--TREYFVTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred EEeehHHHHHHHHhhh---------hh--hhheeeccCcccceEEEEccccchhhcCc
Confidence 9999998888777764 32 57899999999999999998765444443
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=6.5e-09 Score=114.74 Aligned_cols=259 Identities=15% Similarity=0.053 Sum_probs=168.0
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeecCCCCCe---
Q 005096 155 TGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESV--- 231 (715)
Q Consensus 155 dg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I--- 231 (715)
++..|++++.+|.|+.+|.++++.+...........+... .+..+++++.++.|..+|.++++.+.........+
T Consensus 119 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~ 196 (394)
T PRK11138 119 AGGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLR 196 (394)
T ss_pred ECCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCccccc
Confidence 3557888889999999999999988776644322222222 24567778888999999999998877664321111
Q ss_pred --EEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCC-------ceEEEEEcC--CCCEEEEEeCCCcEEEEECC
Q 005096 232 --RDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGW-------DVKSVDWHP--TKSLLVSGGKDSLVKLWDAK 300 (715)
Q Consensus 232 --~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~-------~I~si~~sp--dg~~L~sgs~Dg~I~iwDl~ 300 (715)
..-.+ .+..++.++.++.|..+|.++++.+........ ....+..+| .+..|++++.++.+..+|++
T Consensus 197 ~~~sP~v--~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~ 274 (394)
T PRK11138 197 GESAPAT--AFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLR 274 (394)
T ss_pred CCCCCEE--ECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECC
Confidence 11111 234577788899999999988876654431110 011111111 24567778889999999999
Q ss_pred CCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCC-CCeEEEEEccCCCCEEEEEeCCCcE
Q 005096 301 SGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHR-KDVTALAWHPFHEEYFVSGSLDGSI 379 (715)
Q Consensus 301 s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~-~~V~~l~~sp~~~~~l~sgs~DG~I 379 (715)
+++.+.+.... ....+.. ++..|++++.+|.|..+|.++++.+....... ....+..+ .+..|+.++.||.|
T Consensus 275 tG~~~W~~~~~--~~~~~~~--~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v---~~g~l~v~~~~G~l 347 (394)
T PRK11138 275 SGQIVWKREYG--SVNDFAV--DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL---YNGYLVVGDSEGYL 347 (394)
T ss_pred CCCEEEeecCC--CccCcEE--ECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE---ECCEEEEEeCCCEE
Confidence 99887665421 1122222 46678888899999999999998876554221 22233333 25667788999999
Q ss_pred EEEEcCCCCceEEEeeccCCCEE-EEEEcCCCCEEEEEECCCeEEEEec
Q 005096 380 FHWLVGHETPQVEIHNVHDNTVW-DLAWHPIGYLLCSGSNDHTTKFWCR 427 (715)
Q Consensus 380 ~iwd~~~~~~~~~~~~~h~~~V~-~l~~spdg~~L~sgs~Dg~I~iWdl 427 (715)
+++|..+++.+.+.... ...+. ...+. +..|++++.||.|+.+++
T Consensus 348 ~~ld~~tG~~~~~~~~~-~~~~~s~P~~~--~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 348 HWINREDGRFVAQQKVD-SSGFLSEPVVA--DDKLLIQARDGTVYAITR 393 (394)
T ss_pred EEEECCCCCEEEEEEcC-CCcceeCCEEE--CCEEEEEeCCceEEEEeC
Confidence 99999888766555432 22232 22232 457888899999988864
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.7e-08 Score=123.13 Aligned_cols=238 Identities=12% Similarity=0.099 Sum_probs=158.5
Q ss_pred EEEEEcCC-CCEEEEEeCCCcEEEEeCCCCceeeeecC--------------CCCCeEEEEEecCCCEEEEEEC-CCcEE
Q 005096 190 RSMVWSHN-DNWMVSGDDGGAIKYWQNNMNNVKANKSA--------------HKESVRDLSFCRTDLKFCSCSD-DTTVK 253 (715)
Q Consensus 190 ~~l~~spd-g~~L~tgs~dg~I~iwd~~~~~~~~~~~~--------------h~~~I~~l~~spd~~~Las~s~-Dg~V~ 253 (715)
..++++.+ ++++++-..++.|++||..... +..+.. .-..-..|++.++++.|+++.. ++.|+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~-i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir 649 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGNF-IVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR 649 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCCE-EEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence 35788765 5566666778899999976543 322221 1123578899988887666654 57899
Q ss_pred EEECCCCeeEEEeccc-----------------CCceEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeEEeccC----
Q 005096 254 VWDFARCQEERSLTGH-----------------GWDVKSVDWHP-TKSLLVSGGKDSLVKLWDAKSGRELCSFHGH---- 311 (715)
Q Consensus 254 iwdl~~~~~~~~l~~~-----------------~~~I~si~~sp-dg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~---- 311 (715)
++|+.++. +.++.+. -..-..|+|++ ++.++++.+.++.|++||..++... .+.+.
T Consensus 650 ~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~ 727 (1057)
T PLN02919 650 EIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYER 727 (1057)
T ss_pred EEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCccc
Confidence 99987754 3333211 11235799999 4556666677889999999876543 22110
Q ss_pred -----------CCceEEEEEcCCCCEEEEE-ECCCeEEEEECCCCeEEEEeec-------------C--------CCCeE
Q 005096 312 -----------KNMVLCVKWNQNGNWVLTA-SKDQIIKLYDIRAMKELESFRG-------------H--------RKDVT 358 (715)
Q Consensus 312 -----------~~~I~sl~~spdg~~Lasg-s~dg~I~iwDl~t~~~~~~~~~-------------h--------~~~V~ 358 (715)
-...+.|+|++++++|+++ +.++.|++||++++.......+ . -....
T Consensus 728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~ 807 (1057)
T PLN02919 728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPL 807 (1057)
T ss_pred cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCc
Confidence 1234579999999865554 4668999999987653211100 0 11245
Q ss_pred EEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeec------------cCCCEEEEEEcCCCCEEEEEECCCeEEEEe
Q 005096 359 ALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNV------------HDNTVWDLAWHPIGYLLCSGSNDHTTKFWC 426 (715)
Q Consensus 359 ~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~------------h~~~V~~l~~spdg~~L~sgs~Dg~I~iWd 426 (715)
.+++++ +++++++.+.+++|++||..+.......-.+ .-.....|+++++|+++++-+.++.|++||
T Consensus 808 Gvavd~-dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid 886 (1057)
T PLN02919 808 GVLCAK-DGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLD 886 (1057)
T ss_pred eeeEeC-CCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEE
Confidence 888988 6778888889999999999765433221111 122567899999999999999999999999
Q ss_pred cCCCC
Q 005096 427 RNRPG 431 (715)
Q Consensus 427 l~~~~ 431 (715)
++...
T Consensus 887 ~~~~~ 891 (1057)
T PLN02919 887 LNKGE 891 (1057)
T ss_pred CCCCc
Confidence 97644
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.6e-09 Score=119.52 Aligned_cols=281 Identities=16% Similarity=0.172 Sum_probs=200.7
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCC------------CEEEEEeCCCcEEEEe
Q 005096 147 INRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHND------------NWMVSGDDGGAIKYWQ 214 (715)
Q Consensus 147 I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg------------~~L~tgs~dg~I~iwd 214 (715)
-.+++|++.| +||.|+.+ .|.|.|..+.+.+..+..|...|+.+.|.+.. -+|++++..|.|.|||
T Consensus 18 ~~A~Dw~~~G-LiAygshs-lV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d 95 (1062)
T KOG1912|consen 18 RNAADWSPSG-LIAYGSHS-LVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVD 95 (1062)
T ss_pred ccccccCccc-eEEEecCc-eEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEE
Confidence 6788999988 67777654 69999999999999999999999999998721 2567888889999999
Q ss_pred CCCCceeeeecCCCCCeEEEEEec---CC-CEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcC-CCCEEEEEe
Q 005096 215 NNMNNVKANKSAHKESVRDLSFCR---TD-LKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHP-TKSLLVSGG 289 (715)
Q Consensus 215 ~~~~~~~~~~~~h~~~I~~l~~sp---d~-~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~sp-dg~~L~sgs 289 (715)
......+..+..+.+.|.+++|-+ +. ..|++-....+|.+|+..+++...+.........|+.++| |.+.|..-+
T Consensus 96 ~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~ 175 (1062)
T KOG1912|consen 96 FVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLG 175 (1062)
T ss_pred ehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEc
Confidence 999998889999999999999976 23 4566667778999999999999888776666777899988 445666666
Q ss_pred CCCcEEEEECCC-------CceeEEeccCCC------------c-------------eEEEEEcCCCCEEEEEECCCeEE
Q 005096 290 KDSLVKLWDAKS-------GRELCSFHGHKN------------M-------------VLCVKWNQNGNWVLTASKDQIIK 337 (715)
Q Consensus 290 ~Dg~I~iwDl~s-------~~~~~~~~~~~~------------~-------------I~sl~~spdg~~Lasgs~dg~I~ 337 (715)
..|.|.+.+.-. ++.......|.+ . ...++|+|.-+.++.......+.
T Consensus 176 s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prell 255 (1062)
T KOG1912|consen 176 SKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELL 255 (1062)
T ss_pred cCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceE
Confidence 667777665421 222222222211 0 12356788666666666788999
Q ss_pred EEECCCCeEEEEeecCCCCeEEEEEccC-CCCEEEEEeCCCcEEEEEcCCCCceEEEeec-----cCCCEEEE-------
Q 005096 338 LYDIRAMKELESFRGHRKDVTALAWHPF-HEEYFVSGSLDGSIFHWLVGHETPQVEIHNV-----HDNTVWDL------- 404 (715)
Q Consensus 338 iwDl~t~~~~~~~~~h~~~V~~l~~sp~-~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~-----h~~~V~~l------- 404 (715)
|+|++-..++.......+.+.-+.|-|+ ..+.|++.-.||.+.||-.+......+.... ....+.++
T Consensus 256 v~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~r 335 (1062)
T KOG1912|consen 256 VFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFR 335 (1062)
T ss_pred EEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEEeechhcc
Confidence 9999988888888777777777888774 3457889999999999976553322222111 11122222
Q ss_pred ----EEcCC-CCEEEEEECCCeEEEEecCC
Q 005096 405 ----AWHPI-GYLLCSGSNDHTTKFWCRNR 429 (715)
Q Consensus 405 ----~~spd-g~~L~sgs~Dg~I~iWdl~~ 429 (715)
...|. ...++..-.+|.+.+|.+..
T Consensus 336 p~~~~~cPs~~sa~avl~s~g~~~~w~l~~ 365 (1062)
T KOG1912|consen 336 PVIGASCPSTPSALAVLYSSGDSTFWQLSN 365 (1062)
T ss_pred cceeecCCCChhhhhhhhhcchhHHHhhhc
Confidence 22333 33444445678889998864
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.8e-08 Score=111.34 Aligned_cols=211 Identities=6% Similarity=-0.057 Sum_probs=132.0
Q ss_pred CeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCE-EEEEeC---CCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCC
Q 005096 166 GEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNW-MVSGDD---GGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDL 241 (715)
Q Consensus 166 g~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~-L~tgs~---dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~ 241 (715)
..|.+-|.+..+ .+.+.... .+....|++|++. ++..+. +..|.++|+.+++..... ...+.+....|++|++
T Consensus 169 ~~l~~~d~dg~~-~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt-~~~g~~~~~~~SPDG~ 245 (419)
T PRK04043 169 SNIVLADYTLTY-QKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIA-SSQGMLVVSDVSKDGS 245 (419)
T ss_pred ceEEEECCCCCc-eeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEe-cCCCcEEeeEECCCCC
Confidence 356665655443 33333333 7778999999984 554333 356888899887665544 3455566788999998
Q ss_pred EEEEEE-C--CCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCC-C--cEEEEECCCCceeEEeccCCCce
Q 005096 242 KFCSCS-D--DTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKD-S--LVKLWDAKSGRELCSFHGHKNMV 315 (715)
Q Consensus 242 ~Las~s-~--Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~D-g--~I~iwDl~s~~~~~~~~~~~~~I 315 (715)
.|+... . +..|+++|+.+++. ..+..+........|+|||+.|+..+.. + .|+++|+.+++..+.... ...
T Consensus 246 ~la~~~~~~g~~~Iy~~dl~~g~~-~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~~- 322 (419)
T PRK04043 246 KLLLTMAPKGQPDIYLYDTNTKTL-TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GKN- 322 (419)
T ss_pred EEEEEEccCCCcEEEEEECCCCcE-EEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CCc-
Confidence 776543 3 34688889877654 3444344334467899999977776642 3 588889987766443322 111
Q ss_pred EEEEEcCCCCEEEEEECC---------CeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEe-CCCc--EEEEE
Q 005096 316 LCVKWNQNGNWVLTASKD---------QIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGS-LDGS--IFHWL 383 (715)
Q Consensus 316 ~sl~~spdg~~Lasgs~d---------g~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs-~DG~--I~iwd 383 (715)
...|+|||++|+..+.. ..|.+.|+.+++. ..+... .......|+| +++.|+..+ ..+. |.+.+
T Consensus 323 -~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT~~-~~~~~p~~SP-DG~~I~f~~~~~~~~~L~~~~ 398 (419)
T PRK04043 323 -NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI-RRLTAN-GVNQFPRFSS-DGGSIMFIKYLGNQSALGIIR 398 (419)
T ss_pred -CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe-EECCCC-CCcCCeEECC-CCCEEEEEEccCCcEEEEEEe
Confidence 24899999999877643 3688889887764 333322 2334688999 555544433 3333 44445
Q ss_pred cCC
Q 005096 384 VGH 386 (715)
Q Consensus 384 ~~~ 386 (715)
++.
T Consensus 399 l~g 401 (419)
T PRK04043 399 LNY 401 (419)
T ss_pred cCC
Confidence 533
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=9.5e-09 Score=113.42 Aligned_cols=263 Identities=8% Similarity=0.000 Sum_probs=168.6
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCceEEEEeccCC----------CEE-EEEEcCCCCEEEEEeCCCcEEEEeCCCCceeee
Q 005096 155 TGRRLITGSQSGEFTLWNGQSFNFEMILQAHDH----------AIR-SMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKAN 223 (715)
Q Consensus 155 dg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~----------~V~-~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~ 223 (715)
.+..|++++.+|.|.-+|.++++.+-....... .+. .+.. ++..+++++.++.|..+|.++++.+..
T Consensus 68 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~~~g~l~ald~~tG~~~W~ 145 (394)
T PRK11138 68 AYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGSEKGQVYALNAEDGEVAWQ 145 (394)
T ss_pred ECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE--ECCEEEEEcCCCEEEEEECCCCCCccc
Confidence 355788888889999999999887766543221 000 1122 356777888899999999999988776
Q ss_pred ecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCce-----EEEEEcCCCCEEEEEeCCCcEEEEE
Q 005096 224 KSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDV-----KSVDWHPTKSLLVSGGKDSLVKLWD 298 (715)
Q Consensus 224 ~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I-----~si~~spdg~~L~sgs~Dg~I~iwD 298 (715)
............+ .+..+++++.++.|..+|.++++.+-.+......+ .+-... +..+++++.++.|..+|
T Consensus 146 ~~~~~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~--~~~v~~~~~~g~v~a~d 221 (394)
T PRK11138 146 TKVAGEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATA--FGGAIVGGDNGRVSAVL 221 (394)
T ss_pred ccCCCceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEE--CCEEEEEcCCCEEEEEE
Confidence 6543322222222 24567778889999999999999887765321111 111111 34577788899999999
Q ss_pred CCCCceeEEeccCCC-------ceEEEEEcC--CCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCE
Q 005096 299 AKSGRELCSFHGHKN-------MVLCVKWNQ--NGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEY 369 (715)
Q Consensus 299 l~s~~~~~~~~~~~~-------~I~sl~~sp--dg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~ 369 (715)
.++++.+........ ....+..+| .+..|++++.++.+..+|..+++.+.+.... ....+.. .+..
T Consensus 222 ~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~--~~~~~~~---~~~~ 296 (394)
T PRK11138 222 MEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYG--SVNDFAV---DGGR 296 (394)
T ss_pred ccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCC--CccCcEE---ECCE
Confidence 999987765431110 011111122 3556777888999999999999987765422 1122222 4566
Q ss_pred EEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCCC
Q 005096 370 FVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRP 430 (715)
Q Consensus 370 l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~ 430 (715)
|+.++.+|.|..+|..+++.+.+..........+..+. +.+|+.++.||.|.+.|.++.
T Consensus 297 vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~--~g~l~v~~~~G~l~~ld~~tG 355 (394)
T PRK11138 297 IYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVLY--NGYLVVGDSEGYLHWINREDG 355 (394)
T ss_pred EEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEEE--CCEEEEEeCCCEEEEEECCCC
Confidence 77778899999999988876554322111122222232 557888999999999988653
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=99.17 E-value=4.6e-08 Score=100.60 Aligned_cols=218 Identities=14% Similarity=0.128 Sum_probs=147.6
Q ss_pred EEEEcC-CCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeecC-
Q 005096 149 RVLWTP-TGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSA- 226 (715)
Q Consensus 149 ~l~~sp-dg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~~- 226 (715)
+++|.+ ++.++++-...+.|+.|+..+++... +.... ...+++...+..|+++..+ .+.++|..+++.......
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~g~l~v~~~~-~~~~~d~~~g~~~~~~~~~ 79 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPDGRLYVADSG-GIAVVDPDTGKVTVLADLP 79 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTTSEEEEEETT-CEEEEETTTTEEEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccCCEEEEEEcC-ceEEEecCCCcEEEEeecc
Confidence 578887 66666666678999999998876544 22222 6777777333555555554 455669888865544432
Q ss_pred ----CCCCeEEEEEecCCCEEEEEECC--------CcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEE-EEeCCCc
Q 005096 227 ----HKESVRDLSFCRTDLKFCSCSDD--------TTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLV-SGGKDSL 293 (715)
Q Consensus 227 ----h~~~I~~l~~spd~~~Las~s~D--------g~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~-sgs~Dg~ 293 (715)
.....+++++.++|++.++.... |.|..++.. ++...... .-...+.|+|+++++.|+ +-+..+.
T Consensus 80 ~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~~~pNGi~~s~dg~~lyv~ds~~~~ 157 (246)
T PF08450_consen 80 DGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GLGFPNGIAFSPDGKTLYVADSFNGR 157 (246)
T ss_dssp TTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EESSEEEEEEETTSSEEEEEETTTTE
T ss_pred CCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec-CcccccceEECCcchheeecccccce
Confidence 34678899999999977776653 557777776 44433333 345678999999999776 4566778
Q ss_pred EEEEECCCCce-------eEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEc-cC
Q 005096 294 VKLWDAKSGRE-------LCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWH-PF 365 (715)
Q Consensus 294 I~iwDl~s~~~-------~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~s-p~ 365 (715)
|..||+..... +..+....+....+++..+|++.++....+.|.++|.+ ++.+..+......+++++|. ++
T Consensus 158 i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg~~ 236 (246)
T PF08450_consen 158 IWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFGGPD 236 (246)
T ss_dssp EEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEESTT
T ss_pred eEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEECCC
Confidence 99998863221 12223223357889999999988888889999999988 99888888776799999995 42
Q ss_pred CCCEEEEE
Q 005096 366 HEEYFVSG 373 (715)
Q Consensus 366 ~~~~l~sg 373 (715)
.+.+++|.
T Consensus 237 ~~~L~vTt 244 (246)
T PF08450_consen 237 GKTLYVTT 244 (246)
T ss_dssp SSEEEEEE
T ss_pred CCEEEEEe
Confidence 34444443
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.17 E-value=4.5e-09 Score=103.28 Aligned_cols=231 Identities=10% Similarity=0.040 Sum_probs=155.6
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCceeeee-cCCCCCeEEEEE-ecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceE
Q 005096 197 NDNWMVSGDDGGAIKYWQNNMNNVKANK-SAHKESVRDLSF-CRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVK 274 (715)
Q Consensus 197 dg~~L~tgs~dg~I~iwd~~~~~~~~~~-~~h~~~I~~l~~-spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~ 274 (715)
...+|+.|+..|...+|...+++....+ ..+...|+-+.- +-....+..++.|.++++.+++-+.....+....-.+.
T Consensus 83 kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~n 162 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQN 162 (344)
T ss_pred cccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeecccccee
Confidence 4568999999999999998876543332 233333322211 11223477888899999998865443333322223488
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCC-c-eeE-EeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEE--
Q 005096 275 SVDWHPTKSLLVSGGKDSLVKLWDAKSG-R-ELC-SFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELES-- 349 (715)
Q Consensus 275 si~~spdg~~L~sgs~Dg~I~iwDl~s~-~-~~~-~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~-- 349 (715)
++++++|++++++.++...|..|.+... + .++ ......+.-.+.+|+.....+|+++.||++.|||+|.......
T Consensus 163 s~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~ 242 (344)
T KOG4532|consen 163 SLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEI 242 (344)
T ss_pred eeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhh
Confidence 9999999999999999999999988643 2 233 2233445567889999999999999999999999997654332
Q ss_pred ---eecCCCCeEEEEEccCCC-CEEEEEeCCCcEEEEEcCCCCceEEEeec------cC-CCEEEEEEcCCCCEEEEEEC
Q 005096 350 ---FRGHRKDVTALAWHPFHE-EYFVSGSLDGSIFHWLVGHETPQVEIHNV------HD-NTVWDLAWHPIGYLLCSGSN 418 (715)
Q Consensus 350 ---~~~h~~~V~~l~~sp~~~-~~l~sgs~DG~I~iwd~~~~~~~~~~~~~------h~-~~V~~l~~spdg~~L~sgs~ 418 (715)
-..|.+.+..+.|++.+. ++|+..-.-+.+.+.|+++......+... |. ..|....|+.++..+.+.++
T Consensus 243 sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e 322 (344)
T KOG4532|consen 243 SSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNE 322 (344)
T ss_pred cccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcccccccc
Confidence 235888999999997332 35555555678999999887655443321 22 23777778777766666554
Q ss_pred CCeEEEEecC
Q 005096 419 DHTTKFWCRN 428 (715)
Q Consensus 419 Dg~I~iWdl~ 428 (715)
+ .+.-|+++
T Consensus 323 ~-~~ae~ni~ 331 (344)
T KOG4532|consen 323 L-QGAEYNIL 331 (344)
T ss_pred h-hhheeecc
Confidence 3 33445544
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.4e-08 Score=112.20 Aligned_cols=191 Identities=10% Similarity=0.039 Sum_probs=128.9
Q ss_pred cEEEEEEcCCCCE-EEEEeCC---CeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEE-EeCC--CcEEEEeCCCC
Q 005096 146 SINRVLWTPTGRR-LITGSQS---GEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVS-GDDG--GAIKYWQNNMN 218 (715)
Q Consensus 146 ~I~~l~~spdg~~-Latgs~d---g~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~t-gs~d--g~I~iwd~~~~ 218 (715)
.+....|+|||+. ++..+.+ ..|+++|+.+++...... ..+.+....|++||+.|+. .+.+ ..|.++|+.++
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g 267 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK 267 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence 5778999999985 6654443 569999998887665544 5566777899999987754 3334 45777788777
Q ss_pred ceeeeecCCCCCeEEEEEecCCCEEEEEECC-C--cEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCC----
Q 005096 219 NVKANKSAHKESVRDLSFCRTDLKFCSCSDD-T--TVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKD---- 291 (715)
Q Consensus 219 ~~~~~~~~h~~~I~~l~~spd~~~Las~s~D-g--~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~D---- 291 (715)
+... +..+........|++|++.|+..+.. + .|+++|+++++..+.... .. ....|+|||+.|+.....
T Consensus 268 ~~~~-LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~--~~~~~SPDG~~Ia~~~~~~~~~ 343 (419)
T PRK04043 268 TLTQ-ITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GK--NNSSVSTYKNYIVYSSRETNNE 343 (419)
T ss_pred cEEE-cccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CC--cCceECCCCCEEEEEEcCCCcc
Confidence 6443 33333334456899999988877643 2 588888887766443322 11 135899999988877654
Q ss_pred -----CcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCC---eEEEEECCC
Q 005096 292 -----SLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQ---IIKLYDIRA 343 (715)
Q Consensus 292 -----g~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg---~I~iwDl~t 343 (715)
..|.+.|+.++.. ..+... .......|+|||+.|+..+.++ .|.++++..
T Consensus 344 ~~~~~~~I~v~d~~~g~~-~~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g 401 (419)
T PRK04043 344 FGKNTFNLYLISTNSDYI-RRLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNY 401 (419)
T ss_pred cCCCCcEEEEEECCCCCe-EECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCC
Confidence 2688889887764 344332 2334689999999888766432 466667653
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.7e-08 Score=102.81 Aligned_cols=218 Identities=11% Similarity=0.011 Sum_probs=145.0
Q ss_pred CCeEEEEeCCCCceEEEEecc--CCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCE
Q 005096 165 SGEFTLWNGQSFNFEMILQAH--DHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLK 242 (715)
Q Consensus 165 dg~I~Iwd~~~~~~~~~l~~h--~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~ 242 (715)
+|.|..||..+++.+...... .....+..+ .+++++++++.++.|..||..+++.+..+.. ...+.... ..++..
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~~ 78 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAV-PDGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGGR 78 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEE-EETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETTE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEE-EeCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eecccc
Confidence 688999999999988887642 122222222 2567788888999999999999998877765 22222212 224566
Q ss_pred EEEEECCCcEEEEECCCCeeEEEe-cccC---CceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCc----
Q 005096 243 FCSCSDDTTVKVWDFARCQEERSL-TGHG---WDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNM---- 314 (715)
Q Consensus 243 Las~s~Dg~V~iwdl~~~~~~~~l-~~~~---~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~---- 314 (715)
+++++.++.|+.+|..+++.+... .... .........-+++.++++..++.|..+|+++|+.+.........
T Consensus 79 v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~ 158 (238)
T PF13360_consen 79 VYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSP 158 (238)
T ss_dssp EEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--
T ss_pred cccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcc
Confidence 777778889999999999998874 3221 11122222223788888888999999999999998877643322
Q ss_pred ------e-EEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCC
Q 005096 315 ------V-LCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHE 387 (715)
Q Consensus 315 ------I-~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~ 387 (715)
+ ..+.+. ++ .+++++.++.+..+|+++++.+.... ...+..+. .. .+..|++++.++.|.+||++++
T Consensus 159 ~~~~~~~~~~~~~~-~~-~v~~~~~~g~~~~~d~~tg~~~w~~~--~~~~~~~~-~~-~~~~l~~~~~~~~l~~~d~~tG 232 (238)
T PF13360_consen 159 ISSFSDINGSPVIS-DG-RVYVSSGDGRVVAVDLATGEKLWSKP--ISGIYSLP-SV-DGGTLYVTSSDGRLYALDLKTG 232 (238)
T ss_dssp EEEETTEEEEEECC-TT-EEEEECCTSSEEEEETTTTEEEEEEC--SS-ECECE-EC-CCTEEEEEETTTEEEEEETTTT
T ss_pred eeeecccccceEEE-CC-EEEEEcCCCeEEEEECCCCCEEEEec--CCCccCCc-ee-eCCEEEEEeCCCEEEEEECCCC
Confidence 1 223333 44 77777777754444999999775333 33333322 22 5667777779999999999988
Q ss_pred CceE
Q 005096 388 TPQV 391 (715)
Q Consensus 388 ~~~~ 391 (715)
+...
T Consensus 233 ~~~W 236 (238)
T PF13360_consen 233 KVVW 236 (238)
T ss_dssp EEEE
T ss_pred CEEe
Confidence 7554
|
... |
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.12 E-value=6.7e-10 Score=121.65 Aligned_cols=272 Identities=18% Similarity=0.261 Sum_probs=187.6
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC-ceeeee-cCCCCCeEEEEEecCC--CEEEEEECCCcEEEEECC---
Q 005096 186 DHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN-NVKANK-SAHKESVRDLSFCRTD--LKFCSCSDDTTVKVWDFA--- 258 (715)
Q Consensus 186 ~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~-~~~~~~-~~h~~~I~~l~~spd~--~~Las~s~Dg~V~iwdl~--- 258 (715)
++.+..+.+++.|+-+++++.-|. .+.|+... ..-..+ ....-.|.++.|++.. .+-++......-.+|++.
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~gl-~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss 102 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQGL-YIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSS 102 (1081)
T ss_pred cCcccceeeccccchhhhhhhcCe-EEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCC
Confidence 567788899999999998888764 45565542 222221 2223456777787643 445555556667789983
Q ss_pred CCeeEEEecccCCceEEEEEcCCC-CEEEEEeCCCcEEEEECCCC-ceeEEeccCCCceEEEEEcCCCCEEEEEECCCeE
Q 005096 259 RCQEERSLTGHGWDVKSVDWHPTK-SLLVSGGKDSLVKLWDAKSG-RELCSFHGHKNMVLCVKWNQNGNWVLTASKDQII 336 (715)
Q Consensus 259 ~~~~~~~l~~~~~~I~si~~spdg-~~L~sgs~Dg~I~iwDl~s~-~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I 336 (715)
+......+.+|...|+.+.|++.. ..|++++.|..+..||+++- ..+..+..-......|+|+-..-.+++.+..+.|
T Consensus 103 ~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i 182 (1081)
T KOG0309|consen 103 SNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDI 182 (1081)
T ss_pred ccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCce
Confidence 344556677899999999999865 48899999999999999975 4556666566677889999855556666778899
Q ss_pred EEEECCCC-eEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEE
Q 005096 337 KLYDIRAM-KELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCS 415 (715)
Q Consensus 337 ~iwDl~t~-~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~s 415 (715)
++||++.+ ..+..+++|...|+.+.|.......+.+++.||+|++||.+......+.....+..|+.-.+.|-|+-.++
T Consensus 183 ~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~ 262 (1081)
T KOG0309|consen 183 FVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCI 262 (1081)
T ss_pred EEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEe
Confidence 99999876 46788899999999999987777789999999999999998776665555556778888888886543332
Q ss_pred --EECCCeEEEEecCCCCCcccc----cccccCCccccceeeEEeecCCC
Q 005096 416 --GSNDHTTKFWCRNRPGDTARD----KFNMGQNQGYGEQNAVFAGRMPG 459 (715)
Q Consensus 416 --gs~Dg~I~iWdl~~~~~~~~~----~~~~~~~~g~~~~~~~~~~~~~~ 459 (715)
--.+..|.+++.+... ..+. ...+....|+++.+.+|.++..+
T Consensus 263 mp~~G~n~v~~~~c~n~d-~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~ 311 (1081)
T KOG0309|consen 263 MPMVGGNMVPQLRCENSD-LEWNVFDLNTPVHTFVGHDDVVLEFLWRKRK 311 (1081)
T ss_pred ccccCCeeeeeccccchh-hhhccccCCcceeeecCcchHHHHHhhhhcc
Confidence 2223355555443222 1211 12223345556666666555433
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=99.11 E-value=4.4e-08 Score=103.07 Aligned_cols=225 Identities=14% Similarity=0.171 Sum_probs=157.0
Q ss_pred ecCCCCc--cEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEec---c---C--CCEEEEE----Ec-CCCCEEEE
Q 005096 139 SLNKNRC--SINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQA---H---D--HAIRSMV----WS-HNDNWMVS 203 (715)
Q Consensus 139 ~l~~H~~--~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~---h---~--~~V~~l~----~s-pdg~~L~t 203 (715)
.++.|++ .-.+-..+.||++|+.. ..|.|++||-++.++.+.-.+ . + ..+.-.. |+ -+|++++.
T Consensus 259 DlrrHTnFtdYY~R~~nsDGkrIvFq-~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~ 337 (668)
T COG4946 259 DLRRHTNFTDYYPRNANSDGKRIVFQ-NAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIAL 337 (668)
T ss_pred hhhhcCCchhccccccCCCCcEEEEe-cCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEE
Confidence 3444543 23344456688877654 456799999877655443221 0 0 0111111 22 16788888
Q ss_pred EeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCC-cEEEEECCCCeeEEEecccCCceEEEEEcCCC
Q 005096 204 GDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDT-TVKVWDFARCQEERSLTGHGWDVKSVDWHPTK 282 (715)
Q Consensus 204 gs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg-~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg 282 (715)
.+. |...|.+...+-.+. ..+...|.-..+..+.+.++.|..|| .|-|+|.++++. ..+...-+.|.++..+++|
T Consensus 338 VSR-GkaFi~~~~~~~~iq--v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~-kr~e~~lg~I~av~vs~dG 413 (668)
T COG4946 338 VSR-GKAFIMRPWDGYSIQ--VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV-KRIEKDLGNIEAVKVSPDG 413 (668)
T ss_pred Eec-CcEEEECCCCCeeEE--cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceE-EEeeCCccceEEEEEcCCC
Confidence 876 667777665555444 35677788888888888999999999 899999988754 4445567789999999999
Q ss_pred CEEEEEeCCCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCC----eEEEEECCCCeEEEEeecCCCCeE
Q 005096 283 SLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQ----IIKLYDIRAMKELESFRGHRKDVT 358 (715)
Q Consensus 283 ~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg----~I~iwDl~t~~~~~~~~~h~~~V~ 358 (715)
++++++.....|.++|+++++....-+...+-|+.+.|++++++||.+--+| .|+|+|+.+++...... ....=.
T Consensus 414 K~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT-~ta~Df 492 (668)
T COG4946 414 KKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT-PTAYDF 492 (668)
T ss_pred cEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecC-Cccccc
Confidence 9999998888999999999987665566677899999999999999887666 68999999877654432 222223
Q ss_pred EEEEccCCCCEE
Q 005096 359 ALAWHPFHEEYF 370 (715)
Q Consensus 359 ~l~~sp~~~~~l 370 (715)
+-+|.+ ++++|
T Consensus 493 sPaFD~-d~ryL 503 (668)
T COG4946 493 SPAFDP-DGRYL 503 (668)
T ss_pred CcccCC-CCcEE
Confidence 445555 44443
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.10 E-value=9.1e-09 Score=110.56 Aligned_cols=250 Identities=16% Similarity=0.249 Sum_probs=166.4
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCC--CEEEE-----EeCCCcEEEEeCCCCce
Q 005096 148 NRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHND--NWMVS-----GDDGGAIKYWQNNMNNV 220 (715)
Q Consensus 148 ~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg--~~L~t-----gs~dg~I~iwd~~~~~~ 220 (715)
.++.|+.|..+. +--..+.|.+|++.+.+.+. -..|...|+.+.+++.. ..||+ .+.-+.|+||.......
T Consensus 129 W~~qfs~dEsl~-arlv~nev~f~~~~~f~~~~-~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~ 206 (566)
T KOG2315|consen 129 WVPQFSIDESLA-ARLVSNEVQFYDLGSFKTIQ-HKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQ 206 (566)
T ss_pred cccccccchhhh-hhhhcceEEEEecCCcccee-eeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccc
Confidence 588888887543 33345679999988744332 33467889999999873 33443 24446799998763221
Q ss_pred ---eeeecCCCCCeEEEEEecCCCE-EEEEE--CC---------CcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEE
Q 005096 221 ---KANKSAHKESVRDLSFCRTDLK-FCSCS--DD---------TTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLL 285 (715)
Q Consensus 221 ---~~~~~~h~~~I~~l~~spd~~~-Las~s--~D---------g~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L 285 (715)
+....-....-..+.|+.-+.- |+.++ -| .+++++++...+....+. ..+.|.++.|+++++-+
T Consensus 207 ~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~-k~GPVhdv~W~~s~~EF 285 (566)
T KOG2315|consen 207 HQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL-KEGPVHDVTWSPSGREF 285 (566)
T ss_pred cchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC-CCCCceEEEECCCCCEE
Confidence 1111122233345667765543 22222 23 468888887444444443 57899999999999866
Q ss_pred EEE--eCCCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEEC---CCeEEEEECCCCeEEEEeecCCCCeEEE
Q 005096 286 VSG--GKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASK---DQIIKLYDIRAMKELESFRGHRKDVTAL 360 (715)
Q Consensus 286 ~sg--s~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~---dg~I~iwDl~t~~~~~~~~~h~~~V~~l 360 (715)
+++ -.-.++.|||++ ++.+..+- .+.-+++-|+|.|++|+.++- .|.|.|||+.+.+++.+++..+ .+-+
T Consensus 286 ~VvyGfMPAkvtifnlr-~~~v~df~--egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~--tt~~ 360 (566)
T KOG2315|consen 286 AVVYGFMPAKVTIFNLR-GKPVFDFP--EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAAN--TTVF 360 (566)
T ss_pred EEEEecccceEEEEcCC-CCEeEeCC--CCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCC--ceEE
Confidence 554 456789999988 56666553 566688999999999998774 4789999999988888887544 4567
Q ss_pred EEccCCCCEEEEEeC------CCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCC
Q 005096 361 AWHPFHEEYFVSGSL------DGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPI 409 (715)
Q Consensus 361 ~~sp~~~~~l~sgs~------DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd 409 (715)
.|+| ++.+|+|++. |+.++||++.....-.+.+ ....+.++|-|-
T Consensus 361 eW~P-dGe~flTATTaPRlrvdNg~KiwhytG~~l~~~~f---~sEL~qv~W~P~ 411 (566)
T KOG2315|consen 361 EWSP-DGEYFLTATTAPRLRVDNGIKIWHYTGSLLHEKMF---KSELLQVEWRPF 411 (566)
T ss_pred EEcC-CCcEEEEEeccccEEecCCeEEEEecCceeehhhh---hHhHhheeeeec
Confidence 8999 7888887764 6889999985432211111 115777888754
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=99.08 E-value=8.2e-08 Score=97.82 Aligned_cols=215 Identities=12% Similarity=-0.015 Sum_probs=142.2
Q ss_pred CCCcEEEEeCCCCceeeeecCCCCCeEEEE--EecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCC
Q 005096 206 DGGAIKYWQNNMNNVKANKSAHKESVRDLS--FCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKS 283 (715)
Q Consensus 206 ~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~--~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~ 283 (715)
.+|.|..||..+++.+....... .+.... ...++.++++++.++.|+.||..+++.+..+............ ++.
T Consensus 1 ~~g~l~~~d~~tG~~~W~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~--~~~ 77 (238)
T PF13360_consen 1 DDGTLSALDPRTGKELWSYDLGP-GIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVV--DGG 77 (238)
T ss_dssp -TSEEEEEETTTTEEEEEEECSS-SCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEE--ETT
T ss_pred CCCEEEEEECCCCCEEEEEECCC-CCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeee--ccc
Confidence 36889999998888877764421 122222 3336677888899999999999999988777652221112222 356
Q ss_pred EEEEEeCCCcEEEEECCCCceeEEe-ccCC---CceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCe--
Q 005096 284 LLVSGGKDSLVKLWDAKSGRELCSF-HGHK---NMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDV-- 357 (715)
Q Consensus 284 ~L~sgs~Dg~I~iwDl~s~~~~~~~-~~~~---~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V-- 357 (715)
.+++++.|+.|+.+|+++|+.+... .... ..........+++.++++..++.|..+|+++|+.+..+.......
T Consensus 78 ~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~ 157 (238)
T PF13360_consen 78 RVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSS 157 (238)
T ss_dssp EEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS-
T ss_pred ccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCc
Confidence 6777778889999999999998884 3221 112222333347888999889999999999999998887644221
Q ss_pred ---------EEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecC
Q 005096 358 ---------TALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRN 428 (715)
Q Consensus 358 ---------~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~ 428 (715)
..+.+. ++ .++.++.++.+..+|+.++....... ...+..+ ...++..|++++.++.|.+||++
T Consensus 158 ~~~~~~~~~~~~~~~--~~-~v~~~~~~g~~~~~d~~tg~~~w~~~---~~~~~~~-~~~~~~~l~~~~~~~~l~~~d~~ 230 (238)
T PF13360_consen 158 PISSFSDINGSPVIS--DG-RVYVSSGDGRVVAVDLATGEKLWSKP---ISGIYSL-PSVDGGTLYVTSSDGRLYALDLK 230 (238)
T ss_dssp -EEEETTEEEEEECC--TT-EEEEECCTSSEEEEETTTTEEEEEEC---SS-ECEC-EECCCTEEEEEETTTEEEEEETT
T ss_pred ceeeecccccceEEE--CC-EEEEEcCCCeEEEEECCCCCEEEEec---CCCccCC-ceeeCCEEEEEeCCCEEEEEECC
Confidence 222222 33 77777778764444998887554222 2233332 34567788888899999999996
Q ss_pred CC
Q 005096 429 RP 430 (715)
Q Consensus 429 ~~ 430 (715)
..
T Consensus 231 tG 232 (238)
T PF13360_consen 231 TG 232 (238)
T ss_dssp TT
T ss_pred CC
Confidence 53
|
... |
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.1e-10 Score=127.41 Aligned_cols=213 Identities=15% Similarity=0.278 Sum_probs=159.8
Q ss_pred EEEEecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCC--cEEE
Q 005096 135 FVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGG--AIKY 212 (715)
Q Consensus 135 ~~~~~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg--~I~i 212 (715)
.-.++++.|+...+|++|+-+.++|++|+..|.|++|++.++........|...|+.|.=+.||..+++.+... ...+
T Consensus 1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaL 1171 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSAL 1171 (1516)
T ss_pred ccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHH
Confidence 34567888999999999999999999999999999999999999999999999999999999998887665443 4689
Q ss_pred EeCCC-CceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEec----ccCCceEEEEEcCCCCEEEE
Q 005096 213 WQNNM-NNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLT----GHGWDVKSVDWHPTKSLLVS 287 (715)
Q Consensus 213 wd~~~-~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~----~~~~~I~si~~spdg~~L~s 287 (715)
|+... +..+..+ ..-.++.|+.....-+.|+....+.|||+.++..+.++. +....-++..|+|+.++++
T Consensus 1172 W~~~s~~~~~Hsf----~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl- 1246 (1516)
T KOG1832|consen 1172 WDASSTGGPRHSF----DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL- 1246 (1516)
T ss_pred hccccccCccccc----cccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe-
Confidence 98765 2222222 344577887654444555555679999999987766532 1223346888999988776
Q ss_pred EeCCCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEcc
Q 005096 288 GGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHP 364 (715)
Q Consensus 288 gs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp 364 (715)
.|| .+||++..+.+..|...... ..-.|+|+|+-++.-+ .|||+++.+.++....-+ -+.|.|+.
T Consensus 1247 --ndG--vLWDvR~~~aIh~FD~ft~~-~~G~FHP~g~eVIINS-----EIwD~RTF~lLh~VP~Ld--qc~VtFNs 1311 (1516)
T KOG1832|consen 1247 --NDG--VLWDVRIPEAIHRFDQFTDY-GGGGFHPSGNEVIINS-----EIWDMRTFKLLHSVPSLD--QCAVTFNS 1311 (1516)
T ss_pred --eCc--eeeeeccHHHHhhhhhheec-ccccccCCCceEEeec-----hhhhhHHHHHHhcCcccc--ceEEEecc
Confidence 455 47999998888888755532 3346999999888776 499999988877654322 24556665
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=99.06 E-value=4.2e-07 Score=93.45 Aligned_cols=219 Identities=16% Similarity=0.111 Sum_probs=144.2
Q ss_pred EEEEEcC-CCCEEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecc
Q 005096 190 RSMVWSH-NDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTG 268 (715)
Q Consensus 190 ~~l~~sp-dg~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~ 268 (715)
.+++|.+ ++.++++-...+.|..|+..++........ . ...+++...+..|+++..++ +.++|+.+++....+..
T Consensus 3 Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~-~--~~G~~~~~~~g~l~v~~~~~-~~~~d~~~g~~~~~~~~ 78 (246)
T PF08450_consen 3 EGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLP-G--PNGMAFDRPDGRLYVADSGG-IAVVDPDTGKVTVLADL 78 (246)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEESS-S--EEEEEEECTTSEEEEEETTC-EEEEETTTTEEEEEEEE
T ss_pred cceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEecC-C--CceEEEEccCCEEEEEEcCc-eEEEecCCCcEEEEeec
Confidence 3678887 566666766789999999988765442222 2 77778874345666666654 56669988765544433
Q ss_pred -----cCCceEEEEEcCCCCEEEEEeCC--------CcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEE-EECCC
Q 005096 269 -----HGWDVKSVDWHPTKSLLVSGGKD--------SLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLT-ASKDQ 334 (715)
Q Consensus 269 -----~~~~I~si~~spdg~~L~sgs~D--------g~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Las-gs~dg 334 (715)
.....++++++++|++.++.... |.|..++.. ++...... .-...+.|+|+++++.|++ -+..+
T Consensus 79 ~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~~~pNGi~~s~dg~~lyv~ds~~~ 156 (246)
T PF08450_consen 79 PDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GLGFPNGIAFSPDGKTLYVADSFNG 156 (246)
T ss_dssp ETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EESSEEEEEEETTSSEEEEEETTTT
T ss_pred cCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec-CcccccceEECCcchheeecccccc
Confidence 34568899999999977766543 457777777 44433333 3455789999999997765 45678
Q ss_pred eEEEEECCCC-e---EEE---EeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEc
Q 005096 335 IIKLYDIRAM-K---ELE---SFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWH 407 (715)
Q Consensus 335 ~I~iwDl~t~-~---~~~---~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s 407 (715)
.|..||+... . ... .+....+..-.+++.. +++++++....+.|.++|-+ ++.+..+.. ....+++++|.
T Consensus 157 ~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~-~G~l~va~~~~~~I~~~~p~-G~~~~~i~~-p~~~~t~~~fg 233 (246)
T PF08450_consen 157 RIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDS-DGNLWVADWGGGRIVVFDPD-GKLLREIEL-PVPRPTNCAFG 233 (246)
T ss_dssp EEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBT-TS-EEEEEETTTEEEEEETT-SCEEEEEE--SSSSEEEEEEE
T ss_pred eeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcC-CCCEEEEEcCCCEEEEECCC-ccEEEEEcC-CCCCEEEEEEE
Confidence 8999998532 1 112 2222223478899998 78888888889999999987 544444443 34589999994
Q ss_pred -CCCCEEEEEE
Q 005096 408 -PIGYLLCSGS 417 (715)
Q Consensus 408 -pdg~~L~sgs 417 (715)
++.+.|++.+
T Consensus 234 g~~~~~L~vTt 244 (246)
T PF08450_consen 234 GPDGKTLYVTT 244 (246)
T ss_dssp STTSSEEEEEE
T ss_pred CCCCCEEEEEe
Confidence 5555555443
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.8e-09 Score=110.46 Aligned_cols=161 Identities=17% Similarity=0.238 Sum_probs=114.4
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc----eEEEEeccCCCEEEEEEcCCCCEEEEEeCCCc---EEEEeCCCC
Q 005096 146 SINRVLWTPTGRRLITGSQSGEFTLWNGQSFN----FEMILQAHDHAIRSMVWSHNDNWMVSGDDGGA---IKYWQNNMN 218 (715)
Q Consensus 146 ~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~----~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~---I~iwd~~~~ 218 (715)
.+..+..++++++||++..+....++++.... +...+. -...-+++.|..+...+.++...|. +.+|+...+
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~-v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~ 142 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSC-VPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSG 142 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEee-cccCcceeeeeeccceEEEEeecCCceeeeeeccccc
Confidence 34556677788888888887776666654432 222222 2233345555556666655544444 455555443
Q ss_pred ceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEe-cccCCceEEEEEcCCCCEEEEEeCCCcEEEE
Q 005096 219 NVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSL-TGHGWDVKSVDWHPTKSLLVSGGKDSLVKLW 297 (715)
Q Consensus 219 ~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l-~~~~~~I~si~~spdg~~L~sgs~Dg~I~iw 297 (715)
.. ..+-+|-.-+.+++|++|+++|+++..|..|+|-.......+..+ .+|..-|..+++.+ +..|++++.|++|++|
T Consensus 143 ~~-~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~-~~~LlS~sGD~tlr~W 220 (390)
T KOG3914|consen 143 RC-EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTD-NYLLLSGSGDKTLRLW 220 (390)
T ss_pred Cc-chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeecc-CceeeecCCCCcEEEE
Confidence 33 334589999999999999999999999999999887655555444 56999999999985 4568999999999999
Q ss_pred ECCCCceeEEec
Q 005096 298 DAKSGRELCSFH 309 (715)
Q Consensus 298 Dl~s~~~~~~~~ 309 (715)
|+++++++.++.
T Consensus 221 d~~sgk~L~t~d 232 (390)
T KOG3914|consen 221 DITSGKLLDTCD 232 (390)
T ss_pred ecccCCcccccc
Confidence 999999986664
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=99.04 E-value=3.1e-09 Score=104.10 Aligned_cols=253 Identities=16% Similarity=0.198 Sum_probs=146.1
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce------------EEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 005096 147 INRVLWTPTGRRLITGSQSGEFTLWNGQSFNF------------EMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQ 214 (715)
Q Consensus 147 I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~------------~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd 214 (715)
|+.+.++-+- .|+++..++.+......++.+ .+.+..|.+.-.+-+.+-.++.++++..||.+.+++
T Consensus 39 ~~~~~~v~~~-~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s 117 (319)
T KOG4714|consen 39 LSKVSLSAEY-ILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFS 117 (319)
T ss_pred EEEeechhhh-eeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEe
Confidence 5555555443 466666655554444332222 222333333322223333467899999999999998
Q ss_pred CCCCc-eeeeecCCCCCeEEEEEecCCCEEEEEE-----CCCcEEEEECCCCeeEEEecccCCceEEEEEcCCC-CEEEE
Q 005096 215 NNMNN-VKANKSAHKESVRDLSFCRTDLKFCSCS-----DDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTK-SLLVS 287 (715)
Q Consensus 215 ~~~~~-~~~~~~~h~~~I~~l~~spd~~~Las~s-----~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg-~~L~s 287 (715)
.+... ....+......-.+.+++..++.|.++. .-+..++|+++-.+.+..-......|.+++-+|.. +++++
T Consensus 118 ~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~c 197 (319)
T KOG4714|consen 118 TDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCC 197 (319)
T ss_pred chHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeecccccccccccccccccchhhhCCcccccEEEE
Confidence 76521 1111111111222334444455444332 12346667765444333222233458999988865 47788
Q ss_pred EeCCCcEEEEECCCCce-eEEeccCCCceEEEEEcC-CCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccC
Q 005096 288 GGKDSLVKLWDAKSGRE-LCSFHGHKNMVLCVKWNQ-NGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPF 365 (715)
Q Consensus 288 gs~Dg~I~iwDl~s~~~-~~~~~~~~~~I~sl~~sp-dg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~ 365 (715)
|+.||.+.+||.++... +..++.|+..|+.+-|+| ++..|+++++||.+.-||..+ +.+ ++++
T Consensus 198 gt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~-~~l-------------~i~~- 262 (319)
T KOG4714|consen 198 GTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST-TFL-------------SISN- 262 (319)
T ss_pred ecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC-ceE-------------EecC-
Confidence 89999999999998643 344678999999999999 678999999999999999764 111 1111
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCCc-eE---EEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEe
Q 005096 366 HEEYFVSGSLDGSIFHWLVGHETP-QV---EIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWC 426 (715)
Q Consensus 366 ~~~~l~sgs~DG~I~iwd~~~~~~-~~---~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWd 426 (715)
....+..|--....+ .+ .++......|+++... |..|++|++-+.|++++
T Consensus 263 ---------~~s~~s~WLsgD~v~s~i~i~~ll~~~~~SinsfDV~--g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 263 ---------QASVISSWLSGDPVKSRIEITSLLPSRSLSINSFDVL--GPCLVCGTDAEAIYLTR 316 (319)
T ss_pred ---------ccccccccccCCcccceEeeeccccccceeeeeeecc--CceEEeccccceEEEec
Confidence 112333442211111 11 1222223356666554 77899999989998875
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.04 E-value=8.6e-09 Score=107.77 Aligned_cols=280 Identities=16% Similarity=0.136 Sum_probs=188.5
Q ss_pred CCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCC---CceEEEEeccCCCEEEEEEcCCCCEEEEEeC-CCcEEEEeCCC
Q 005096 142 KNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQS---FNFEMILQAHDHAIRSMVWSHNDNWMVSGDD-GGAIKYWQNNM 217 (715)
Q Consensus 142 ~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~---~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~-dg~I~iwd~~~ 217 (715)
-|++.|+.+..+. .+++++++.||.++.|.-.. -+.++.+..|...|.+++.+-++.++.+.+. |..++++|++.
T Consensus 7 mhrd~i~hv~~tk-a~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn 85 (558)
T KOG0882|consen 7 MHRDVITHVFPTK-AKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVEN 85 (558)
T ss_pred cccceeeeEeeeh-hheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeec
Confidence 3777788776664 45899999999999997443 3456667788889999999999999999777 99999999887
Q ss_pred Cceeeeec--CCCCCeEEEEEecCC-C-EE-EEEECCCcEEEEECCCC--eeEEEecccCCceEEEEEcCCCCEEEEEeC
Q 005096 218 NNVKANKS--AHKESVRDLSFCRTD-L-KF-CSCSDDTTVKVWDFARC--QEERSLTGHGWDVKSVDWHPTKSLLVSGGK 290 (715)
Q Consensus 218 ~~~~~~~~--~h~~~I~~l~~spd~-~-~L-as~s~Dg~V~iwdl~~~--~~~~~l~~~~~~I~si~~spdg~~L~sgs~ 290 (715)
-.....++ .....+.++ .++.. . .| ++.-.++.|.|+|-... .....-.-|...|.++.+++.+..+++...
T Consensus 86 ~DminmiKL~~lPg~a~wv-~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~ 164 (558)
T KOG0882|consen 86 FDMINMIKLVDLPGFAEWV-TSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDI 164 (558)
T ss_pred cchhhhcccccCCCceEEe-cCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccc
Confidence 65543332 222222221 22221 1 23 33345789999996433 333444568899999999999999999999
Q ss_pred CCcEEEEECCC------CceeE---------EeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeec---
Q 005096 291 DSLVKLWDAKS------GRELC---------SFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRG--- 352 (715)
Q Consensus 291 Dg~I~iwDl~s------~~~~~---------~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~--- 352 (715)
.|.|..|.... .+... .+...+...+++.|++++..+.+-+.|..|+++++++++.+..+..
T Consensus 165 ~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t 244 (558)
T KOG0882|consen 165 SGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLT 244 (558)
T ss_pred cceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccch
Confidence 99999998762 22211 2223456789999999999999999999999999999876554321
Q ss_pred -----------------------------CCC-CeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeec------
Q 005096 353 -----------------------------HRK-DVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNV------ 396 (715)
Q Consensus 353 -----------------------------h~~-~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~------ 396 (715)
+.. .-+.+.|.. .+++|+.++--| |++.++.++.....+-..
T Consensus 245 ~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fde-s~~flly~t~~g-ikvin~~tn~v~ri~gk~e~ir~~ 322 (558)
T KOG0882|consen 245 DAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDE-SGNFLLYGTILG-IKVINLDTNTVVRILGKDEAIRFT 322 (558)
T ss_pred hhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcC-CCCEEEeeccee-EEEEEeecCeEEEEeccchhhhhh
Confidence 111 134556665 677877776543 667777665433221110
Q ss_pred -----------cC-------CCEEEEEEcCCCCEEEEEECCCeEEEE
Q 005096 397 -----------HD-------NTVWDLAWHPIGYLLCSGSNDHTTKFW 425 (715)
Q Consensus 397 -----------h~-------~~V~~l~~spdg~~L~sgs~Dg~I~iW 425 (715)
+. +.--.+.+.+|-.+++++-....+++|
T Consensus 323 ~~sl~q~~~k~~~~~~~~~a~~np~~~~~~dpt~~c~a~kk~rfylf 369 (558)
T KOG0882|consen 323 RLSLYQGAQKSNLAALEVAASNNPLLEFQKDPTIVCTAFKKNRFYLF 369 (558)
T ss_pred hHHHHhhhhhccchhhhhhhccCcccccCCCCeEEEeeeecceEEEE
Confidence 00 000112355566778888888888888
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.01 E-value=5.8e-08 Score=103.26 Aligned_cols=253 Identities=14% Similarity=0.197 Sum_probs=173.5
Q ss_pred EEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEEC
Q 005096 169 TLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSD 248 (715)
Q Consensus 169 ~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~ 248 (715)
.+|+..+......+...+-.+..++||+.|.+|++.... .|.+|.-.....+..+ ....|..+.|+|++++|++-+.
T Consensus 15 ~f~~~~s~~~~~~~~~~~~p~~~~~~SP~G~~l~~~~~~-~V~~~~g~~~~~l~~~--~~~~V~~~~fSP~~kYL~tw~~ 91 (561)
T COG5354 15 VFWNSQSEVIHTRFESENWPVAYVSESPLGTYLFSEHAA-GVECWGGPSKAKLVRF--RHPDVKYLDFSPNEKYLVTWSR 91 (561)
T ss_pred EeecCccccccccccccCcchhheeecCcchheehhhcc-ceEEccccchhheeee--ecCCceecccCcccceeeeecc
Confidence 456666655555565567789999999999999877654 5889987776644443 3456899999999999998654
Q ss_pred C---------------CcEEEEECCCCeeEEEecccCCc--eE-EEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEecc
Q 005096 249 D---------------TTVKVWDFARCQEERSLTGHGWD--VK-SVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHG 310 (715)
Q Consensus 249 D---------------g~V~iwdl~~~~~~~~l~~~~~~--I~-si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~ 310 (715)
. +.+.+||+.++..+..+...... .+ -+.|+-++++++-. ....|+|+++...-....+..
T Consensus 92 ~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~t~n~~~~p~~~ 170 (561)
T COG5354 92 EPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEITDNIEEHPFKN 170 (561)
T ss_pred CCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEecCCccccCchhh
Confidence 3 34999999999999888766555 45 67888888877655 335699999732211112221
Q ss_pred -CCCceEEEEEcCCC--CEEEE-----EECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEE-Ee-------
Q 005096 311 -HKNMVLCVKWNQNG--NWVLT-----ASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVS-GS------- 374 (715)
Q Consensus 311 -~~~~I~sl~~spdg--~~Las-----gs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~s-gs------- 374 (715)
....|...+|+|.+ ..|++ ...++.++||.+...+.+.+.......-..+.|.. .+++|++ .-
T Consensus 171 lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~-~g~~ll~l~~t~~ksnK 249 (561)
T COG5354 171 LRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQV-LGKYLLVLVMTHTKSNK 249 (561)
T ss_pred ccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEec-CCceEEEEEEEeeeccc
Confidence 13568888999853 34453 34677999999987777666555555556788888 4444332 11
Q ss_pred ---CCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEE--CCCeEEEEecC
Q 005096 375 ---LDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGS--NDHTTKFWCRN 428 (715)
Q Consensus 375 ---~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs--~Dg~I~iWdl~ 428 (715)
.+..++|+++......+.. ...+.|.+++|.++++.+++.+ .+-.+.++|+.
T Consensus 250 syfgesnLyl~~~~e~~i~V~~--~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr 306 (561)
T COG5354 250 SYFGESNLYLLRITERSIPVEK--DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLR 306 (561)
T ss_pred ceeccceEEEEeecccccceec--cccccceeeeecccCCceeEEecccccceeecccc
Confidence 1346788888754443333 4578999999999887766655 45666666664
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.00 E-value=5.6e-07 Score=88.58 Aligned_cols=263 Identities=11% Similarity=0.064 Sum_probs=149.5
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEEE
Q 005096 155 TGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDL 234 (715)
Q Consensus 155 dg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l 234 (715)
-|++++.|+.+|.+++.+.++++....+...+.--.......++.+|..++.|+..+..|..+...+...+.......+-
T Consensus 62 vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP 141 (354)
T KOG4649|consen 62 VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSP 141 (354)
T ss_pred ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccc
Confidence 46789999999999999999998777766543322233456688999999999999999999988877766555555555
Q ss_pred EEecCCCEEEEEECCCcEEEEECCCCe--eEEEecccCCceEE--EEEcCCCCEEEEEeCCCcEEEEECCCCceeEEecc
Q 005096 235 SFCRTDLKFCSCSDDTTVKVWDFARCQ--EERSLTGHGWDVKS--VDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHG 310 (715)
Q Consensus 235 ~~spd~~~Las~s~Dg~V~iwdl~~~~--~~~~l~~~~~~I~s--i~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~ 310 (715)
++.+-...|+.+...|.|.-...+... .+.... ..+.|.+ ++. +..+..++-||.+.-+| .+|+.+..+.
T Consensus 142 ~i~~g~~sly~a~t~G~vlavt~~~~~~~~~w~~~-~~~PiF~splcv---~~sv~i~~VdG~l~~f~-~sG~qvwr~~- 215 (354)
T KOG4649|consen 142 VIAPGDGSLYAAITAGAVLAVTKNPYSSTEFWAAT-RFGPIFASPLCV---GSSVIITTVDGVLTSFD-ESGRQVWRPA- 215 (354)
T ss_pred eecCCCceEEEEeccceEEEEccCCCCcceehhhh-cCCccccCceec---cceEEEEEeccEEEEEc-CCCcEEEeec-
Confidence 666644556666667766666555441 111111 1122221 122 34455666677777777 5566665544
Q ss_pred CCCceEE-EEEc-CCCCEEEEEECCC--------eEEEEECCCCeEEEEeecCCCCeEEEEEcc---CCCCEEEEEeCCC
Q 005096 311 HKNMVLC-VKWN-QNGNWVLTASKDQ--------IIKLYDIRAMKELESFRGHRKDVTALAWHP---FHEEYFVSGSLDG 377 (715)
Q Consensus 311 ~~~~I~s-l~~s-pdg~~Lasgs~dg--------~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp---~~~~~l~sgs~DG 377 (715)
..+.|.. -+-+ |....|..+.++. .-.+|...++.....+...+- ...++. .+.++|..++.||
T Consensus 216 t~GpIf~~Pc~s~Ps~q~i~~~~~~Cf~~~~p~~ghL~w~~~~g~t~~vy~~p~l---~F~~h~~~~S~~~ll~~~s~dg 292 (354)
T KOG4649|consen 216 TKGPIFMEPCESRPSCQQISLENENCFCAPLPIAGHLLWATQSGTTLHVYLSPKL---RFDLHSPGISYPKLLRRSSGDG 292 (354)
T ss_pred CCCceecccccCCCcceEEEEecCCeEEEeccccceEEEEecCCcEEEEEeCccc---ceeccCCCCcchhhhhhhcCCC
Confidence 2222211 1111 2223333333322 233566666544333221110 111111 1356778889999
Q ss_pred cEEEEEcCCCCceEEEeeccCC---CEEEEEEc------CC--CCEEEEEECCCeEEEEecCC
Q 005096 378 SIFHWLVGHETPQVEIHNVHDN---TVWDLAWH------PI--GYLLCSGSNDHTTKFWCRNR 429 (715)
Q Consensus 378 ~I~iwd~~~~~~~~~~~~~h~~---~V~~l~~s------pd--g~~L~sgs~Dg~I~iWdl~~ 429 (715)
++.|..++..-. ++ ..|.+ .++.+..+ |- +..|+.|+.|..|+-||++.
T Consensus 293 kv~il~~~~sl~--~~-~s~~g~lq~~~~~el~~eIFsSPvii~grl~igcRDdYv~cldl~~ 352 (354)
T KOG4649|consen 293 KVMILMTSKSLA--EI-SSNGGELQNLEAIELSNEIFSSPVIIDGRLLIGCRDDYVRCLDLDT 352 (354)
T ss_pred cEEEEEeccccc--cc-ccCCCccceEEEeecCcccccCCeEEccEEEEEEccCeEEEEeccc
Confidence 998885543311 11 11222 23322221 11 24578889999999999864
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.99 E-value=6e-07 Score=92.63 Aligned_cols=227 Identities=12% Similarity=0.097 Sum_probs=159.0
Q ss_pred cEEEEEEcC-CCCEEEEEeCCCe-EEEEeCCCCceEEEEeccCCCEE--EEEEcCCCCEEEEEeC-----CCcEEEEeCC
Q 005096 146 SINRVLWTP-TGRRLITGSQSGE-FTLWNGQSFNFEMILQAHDHAIR--SMVWSHNDNWMVSGDD-----GGAIKYWQNN 216 (715)
Q Consensus 146 ~I~~l~~sp-dg~~Latgs~dg~-I~Iwd~~~~~~~~~l~~h~~~V~--~l~~spdg~~L~tgs~-----dg~I~iwd~~ 216 (715)
+...++.+| +...++.+-.-|+ +.+||..+++....+....+.-. .-+|++||++|++.-. .|.|-|||..
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~ 85 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAA 85 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECc
Confidence 345678888 5566777777765 67899999998888776554432 4689999999998644 4889999998
Q ss_pred -CCceeeeecCCCCCeEEEEEecCCCEEEEEEC------------------CCcEEEEECCCCeeEEE--e--cccCCce
Q 005096 217 -MNNVKANKSAHKESVRDLSFCRTDLKFCSCSD------------------DTTVKVWDFARCQEERS--L--TGHGWDV 273 (715)
Q Consensus 217 -~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~------------------Dg~V~iwdl~~~~~~~~--l--~~~~~~I 273 (715)
....+..+..+.-.-..+.+.+|++.|+++.. +-+|.+.|..+++.+.. + ..|...|
T Consensus 86 ~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSi 165 (305)
T PF07433_consen 86 RGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSI 165 (305)
T ss_pred CCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccce
Confidence 55677777777767778889999988877632 23466677788887766 3 3377789
Q ss_pred EEEEEcCCCCEEEEEeCCCc-------EEEEECCCCceeEEec-------cCCCceEEEEEcCCCCEEEEEE-CCCeEEE
Q 005096 274 KSVDWHPTKSLLVSGGKDSL-------VKLWDAKSGRELCSFH-------GHKNMVLCVKWNQNGNWVLTAS-KDQIIKL 338 (715)
Q Consensus 274 ~si~~spdg~~L~sgs~Dg~-------I~iwDl~s~~~~~~~~-------~~~~~I~sl~~spdg~~Lasgs-~dg~I~i 338 (715)
+.++++.+|..++..-..|. |.+++.. +.+..+. .....|-+|+++.++.++++.+ ..+.+.+
T Consensus 166 RHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g--~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~ 243 (305)
T PF07433_consen 166 RHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRG--GALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAV 243 (305)
T ss_pred eeEEecCCCcEEEEEecCCCCCccCCeEEEEcCC--CcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEE
Confidence 99999999876665543332 4444433 2232222 3456799999999998886655 6789999
Q ss_pred EECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcE
Q 005096 339 YDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSI 379 (715)
Q Consensus 339 wDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I 379 (715)
||..+++.+..... ..+..++... +.++++. ..|.+
T Consensus 244 ~d~~tg~~~~~~~l--~D~cGva~~~--~~f~~ss-G~G~~ 279 (305)
T PF07433_consen 244 WDAATGRLLGSVPL--PDACGVAPTD--DGFLVSS-GQGQL 279 (305)
T ss_pred EECCCCCEeecccc--CceeeeeecC--CceEEeC-CCccE
Confidence 99999998877643 3456666654 3344444 34554
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.98 E-value=9.3e-09 Score=106.63 Aligned_cols=162 Identities=18% Similarity=0.225 Sum_probs=116.3
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCce---eeeecCCCCCeEEEEEecCCCEEEEEECCCcEE---EEECCCCe
Q 005096 188 AIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNV---KANKSAHKESVRDLSFCRTDLKFCSCSDDTTVK---VWDFARCQ 261 (715)
Q Consensus 188 ~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~---~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~---iwdl~~~~ 261 (715)
.+..+..++++++||++..+....++++..... ..........-+++.|..+...+..+..-|.++ +|....+
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~- 142 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSG- 142 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeeccccc-
Confidence 344556677888888888888877777655432 111122334445666666666666555544444 4444443
Q ss_pred eEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEe-ccCCCceEEEEEcCCCCEEEEEECCCeEEEEE
Q 005096 262 EERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSF-HGHKNMVLCVKWNQNGNWVLTASKDQIIKLYD 340 (715)
Q Consensus 262 ~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~-~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwD 340 (715)
....+.+|..-+++|+|++|+++|+++..|..|+|-....-..+..| .+|+.-|..++.-++ ..|++++.|++|++||
T Consensus 143 ~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~tlr~Wd 221 (390)
T KOG3914|consen 143 RCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKTLRLWD 221 (390)
T ss_pred CcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCcEEEEe
Confidence 33445679999999999999999999999999999877655555554 469999999998754 5689999999999999
Q ss_pred CCCCeEEEEee
Q 005096 341 IRAMKELESFR 351 (715)
Q Consensus 341 l~t~~~~~~~~ 351 (715)
+++++.+.++.
T Consensus 222 ~~sgk~L~t~d 232 (390)
T KOG3914|consen 222 ITSGKLLDTCD 232 (390)
T ss_pred cccCCcccccc
Confidence 99999987664
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.2e-08 Score=112.60 Aligned_cols=183 Identities=18% Similarity=0.239 Sum_probs=146.5
Q ss_pred CCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCceEEE
Q 005096 239 TDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCV 318 (715)
Q Consensus 239 d~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl 318 (715)
+...++.|+....+..+|+++.++.+...-....|+-+..+ +++|++|...|+|.+-|.++.+.+.++..|.+.|..+
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~N--nr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDf 223 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRYN--NRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDF 223 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEec--CcEEEeecccceEEeecCCcCceeeeeeccccceeee
Confidence 44567778888889999999988877776555566666654 7899999999999999999999999999999999876
Q ss_pred EEcCCCCEEEEEEC---------CCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEE---cCC
Q 005096 319 KWNQNGNWVLTASK---------DQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWL---VGH 386 (715)
Q Consensus 319 ~~spdg~~Lasgs~---------dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd---~~~ 386 (715)
.. .|++|++++. |..|+|||+|+.+.+.-+.-+.+. .-+.|+|.-...+++++..|...+-| +.+
T Consensus 224 Dv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsN 300 (1118)
T KOG1275|consen 224 DV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSN 300 (1118)
T ss_pred ec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCC
Confidence 65 5888988873 557899999998877666544443 56778887778899999999999998 433
Q ss_pred CCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEe
Q 005096 387 ETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWC 426 (715)
Q Consensus 387 ~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWd 426 (715)
............+.+..+++++++..|+.+..+|.|.+|.
T Consensus 301 P~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 301 PPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred CccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 3333333434455699999999999999999999999997
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.1e-07 Score=108.19 Aligned_cols=238 Identities=14% Similarity=0.235 Sum_probs=158.8
Q ss_pred CCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCC----C-
Q 005096 143 NRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNN----M- 217 (715)
Q Consensus 143 H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~----~- 217 (715)
-++.|.++.|.-+..-|+.+..+|.|.+-|.++.... ....-+..|.+++|++|+++++..+.+++|.+-.-. .
T Consensus 67 gd~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e-ivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E 145 (1265)
T KOG1920|consen 67 GDDEIVSVQFLADTNSICVITALGDIILVDPETLELE-IVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAE 145 (1265)
T ss_pred CCcceEEEEEecccceEEEEecCCcEEEEccccccee-eeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhc
Confidence 3468999999999999999999999999998876433 334457889999999999999988887777664320 0
Q ss_pred ------------------CceeeeecC---------------------CCCCeEEEEEecCCCEEEEEE-----CCCcEE
Q 005096 218 ------------------NNVKANKSA---------------------HKESVRDLSFCRTDLKFCSCS-----DDTTVK 253 (715)
Q Consensus 218 ------------------~~~~~~~~~---------------------h~~~I~~l~~spd~~~Las~s-----~Dg~V~ 253 (715)
++....+.+ ..+.=+.|+|.-||.++|+.. ...+|+
T Consensus 146 ~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~Rkir 225 (1265)
T KOG1920|consen 146 KPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIR 225 (1265)
T ss_pred cccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEE
Confidence 010111111 011123589999999988732 237899
Q ss_pred EEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEe---CCCcEEEEECCC---CceeEEeccCCCceEEEEEcCCCCEE
Q 005096 254 VWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGG---KDSLVKLWDAKS---GRELCSFHGHKNMVLCVKWNQNGNWV 327 (715)
Q Consensus 254 iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs---~Dg~I~iwDl~s---~~~~~~~~~~~~~I~sl~~spdg~~L 327 (715)
|||-+ +..-..-....+.-.+++|-|.|.++++.. .|+.|.+|.-+. ++-...+......|..++|+.++..|
T Consensus 226 V~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiL 304 (1265)
T KOG1920|consen 226 VYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDIL 304 (1265)
T ss_pred Eeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCCCCce
Confidence 99976 433333333344456899999999888753 456798987442 22222233334448999999999999
Q ss_pred EE---EECCCeEEEEECCCCeE--EEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEc
Q 005096 328 LT---ASKDQIIKLYDIRAMKE--LESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLV 384 (715)
Q Consensus 328 as---gs~dg~I~iwDl~t~~~--~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~ 384 (715)
++ ......|++|-+.+..- ...+....... +.|+|.....|.+-..+|.+.++|+
T Consensus 305 Av~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~~~--~~W~p~~~~~L~v~~~sG~~~v~~~ 364 (1265)
T KOG1920|consen 305 AVVTSNLENSLVQLWTTGNYHWYLKQELQFSQKAL--LMWDPVTEKTLHVLRESGQRLVRDF 364 (1265)
T ss_pred eeeecccccceEEEEEecCeEEEEEEEEecccccc--ccccCCCceeEEEEecCCcEEEEEE
Confidence 87 44555699999887443 33333333333 8888865555655557777666654
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.1e-08 Score=102.32 Aligned_cols=239 Identities=17% Similarity=0.275 Sum_probs=153.5
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc-----eeeeecCC------------CCCeEEEEEecCC--CEEEEE
Q 005096 186 DHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNN-----VKANKSAH------------KESVRDLSFCRTD--LKFCSC 246 (715)
Q Consensus 186 ~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~-----~~~~~~~h------------~~~I~~l~~spd~--~~Las~ 246 (715)
...|+++.|...|.||++|...|.|.+|..+... ....+..| ...|..|.|..++ ..++..
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 4678999999999999999999999999755432 11122333 3468889998765 457888
Q ss_pred ECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEE--------Ee-CCCcEEEEECCCCceeEEe-ccCCCceE
Q 005096 247 SDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVS--------GG-KDSLVKLWDAKSGRELCSF-HGHKNMVL 316 (715)
Q Consensus 247 s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~s--------gs-~Dg~I~iwDl~s~~~~~~~-~~~~~~I~ 316 (715)
+.|.+|++|.+........-. ..--.++. ++-+.-|.+ .+ .|..|..+ ..+.+ ..|..-|.
T Consensus 106 tNdktiKlWKiyeknlk~va~--nnls~~~~-~~~~g~~~s~~~l~lprls~hd~iiaa~------p~rvyaNaH~yhiN 176 (460)
T COG5170 106 TNDKTIKLWKIYEKNLKVVAE--NNLSDSFH-SPMGGPLTSTKELLLPRLSEHDEIIAAK------PCRVYANAHPYHIN 176 (460)
T ss_pred cCCceeeeeeeecccchhhhc--cccccccc-cccCCCcCCHHHhhcccccccceEEEec------cceeccccceeEee
Confidence 899999999986532211111 10001111 111110100 01 11111111 11112 45778899
Q ss_pred EEEEcCCCCEEEEEECCCeEEEEECCCCeE---EEEeecCC-----CCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCC
Q 005096 317 CVKWNQNGNWVLTASKDQIIKLYDIRAMKE---LESFRGHR-----KDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHET 388 (715)
Q Consensus 317 sl~~spdg~~Lasgs~dg~I~iwDl~t~~~---~~~~~~h~-----~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~ 388 (715)
+|+|+.|...++++ .|-+|.+|++..-.. +..++.|. .-|++..|+|....++...+..|.|++-|++...
T Consensus 177 SiS~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~a 255 (460)
T COG5170 177 SISFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSA 255 (460)
T ss_pred eeeecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhh
Confidence 99999998888776 478899999874332 33333333 3488899999888899999999999999998432
Q ss_pred ce------EE---------EeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCCCCCccc
Q 005096 389 PQ------VE---------IHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGDTAR 435 (715)
Q Consensus 389 ~~------~~---------~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~~~~~ 435 (715)
.. .+ ++..-...|.++.|+++|++|++-+ --+|+|||++......+
T Consensus 256 lcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd-yltvkiwDvnm~k~pik 316 (460)
T COG5170 256 LCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD-YLTVKIWDVNMAKNPIK 316 (460)
T ss_pred hccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEec-cceEEEEecccccCCce
Confidence 11 11 1112234688999999999988765 46899999987665443
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.3e-06 Score=87.60 Aligned_cols=241 Identities=11% Similarity=0.076 Sum_probs=135.4
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEeCCCC--ceeeee---cCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEe
Q 005096 192 MVWSHNDNWMVSGDDGGAIKYWQNNMN--NVKANK---SAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSL 266 (715)
Q Consensus 192 l~~spdg~~L~tgs~dg~I~iwd~~~~--~~~~~~---~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l 266 (715)
++.+.||++||+. .|..|.|-..+++ .++.+. ++..-.-+-++|++|+..||.+...|+|++||+... .+..+
T Consensus 3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~-~lf~I 80 (282)
T PF15492_consen 3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGS-ELFVI 80 (282)
T ss_pred eeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccc-eeEEc
Confidence 5566788877764 4556666543332 222222 223334578999999999999999999999998653 33333
Q ss_pred cc-------cCCceEEEEEcCCC------CEEEEEeCCCcEEEEECCC-----CceeEEec---cCCCceEEEEEcCCCC
Q 005096 267 TG-------HGWDVKSVDWHPTK------SLLVSGGKDSLVKLWDAKS-----GRELCSFH---GHKNMVLCVKWNQNGN 325 (715)
Q Consensus 267 ~~-------~~~~I~si~~spdg------~~L~sgs~Dg~I~iwDl~s-----~~~~~~~~---~~~~~I~sl~~spdg~ 325 (715)
.. ....|..+.|.... ..|++...+|.++-|-+.. .+...++. .+...|.++.|++..+
T Consensus 81 ~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~ 160 (282)
T PF15492_consen 81 PPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHR 160 (282)
T ss_pred CcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCC
Confidence 21 23456667665422 2566667778887776532 22333332 2466899999999988
Q ss_pred EEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEE-EEeCCC------cEEEEEcCCCCceEEEeeccC
Q 005096 326 WVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFV-SGSLDG------SIFHWLVGHETPQVEIHNVHD 398 (715)
Q Consensus 326 ~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~-sgs~DG------~I~iwd~~~~~~~~~~~~~h~ 398 (715)
+|++|+.... +++. -+.....+++-.+..+...+.. +..+|+ +..+|.+-+. ..........
T Consensus 161 LLlVgG~~~~------~~~~----s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~-~~fs~~~~~~ 229 (282)
T PF15492_consen 161 LLLVGGCEQN------QDGM----SKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSF-KFFSRQGQEQ 229 (282)
T ss_pred EEEEeccCCC------CCcc----ccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccce-eeeeccccCC
Confidence 8888764322 0000 0011112222222211111111 111111 1123332211 1111112346
Q ss_pred CCEEEEEEcCCCCEEEEEECCCeEEEEecCCCCCcccccccccCCcccc
Q 005096 399 NTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGDTARDKFNMGQNQGYG 447 (715)
Q Consensus 399 ~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~g~~ 447 (715)
..|..+..+|||.+||+...+|.|.+|++-.-. ...++..++.-+|+
T Consensus 230 d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~--~~~~W~~~eqPg~~ 276 (282)
T PF15492_consen 230 DGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLR--LQRSWKQDEQPGYN 276 (282)
T ss_pred CceEEEEECCCCCEEEEEEcCCeEEEEecCcch--hhcccchhhCCCCc
Confidence 789999999999999999999999999985433 33344444444443
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.7e-06 Score=86.78 Aligned_cols=228 Identities=14% Similarity=0.191 Sum_probs=136.8
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEeCCCC--ceEEEEeccC---CCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeee
Q 005096 150 VLWTPTGRRLITGSQSGEFTLWNGQSF--NFEMILQAHD---HAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANK 224 (715)
Q Consensus 150 l~~spdg~~Latgs~dg~I~Iwd~~~~--~~~~~l~~h~---~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~ 224 (715)
++.+.||++||+.- |..|.|-..++. ..+......+ -.-+.++||+|+.+||.+...|+|++||+...++...-
T Consensus 3 ~~~~~~Gk~lAi~q-d~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~ 81 (282)
T PF15492_consen 3 LALSSDGKLLAILQ-DQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIP 81 (282)
T ss_pred eeecCCCcEEEEEe-ccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccceeEEcC
Confidence 56778898777664 556777654432 2223333222 23568999999999999999999999998764433221
Q ss_pred ------cCCCCCeEEEEEecCC------CEEEEEECCCcEEEEECC-----CCeeEEEec---ccCCceEEEEEcCCCCE
Q 005096 225 ------SAHKESVRDLSFCRTD------LKFCSCSDDTTVKVWDFA-----RCQEERSLT---GHGWDVKSVDWHPTKSL 284 (715)
Q Consensus 225 ------~~h~~~I~~l~~spd~------~~Las~s~Dg~V~iwdl~-----~~~~~~~l~---~~~~~I~si~~spdg~~ 284 (715)
......|..+.|.... ..|++...+|.++-|-+. ..++...+. .+...|.++.+++..++
T Consensus 82 p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~L 161 (282)
T PF15492_consen 82 PAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRL 161 (282)
T ss_pred cccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCE
Confidence 1223567777775432 246677778888877652 223333333 24668999999999998
Q ss_pred EEEEeCCCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCE-E-EEEECCC------eEEEEECCCCeEEEEeecCCCC
Q 005096 285 LVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNW-V-LTASKDQ------IIKLYDIRAMKELESFRGHRKD 356 (715)
Q Consensus 285 L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~-L-asgs~dg------~I~iwDl~t~~~~~~~~~h~~~ 356 (715)
|++|+.... +++. .+.....+++-.+-.+.-+ . ++...|+ +..+|.+-+.+...........
T Consensus 162 LlVgG~~~~------~~~~----s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~ 231 (282)
T PF15492_consen 162 LLVGGCEQN------QDGM----SKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDG 231 (282)
T ss_pred EEEeccCCC------CCcc----ccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCc
Confidence 888775432 0000 0011122222222222111 1 1111121 1233443333333333446778
Q ss_pred eEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCc
Q 005096 357 VTALAWHPFHEEYFVSGSLDGSIFHWLVGHETP 389 (715)
Q Consensus 357 V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~ 389 (715)
|..|..+| ++.+||+...+|.|.+|++-.-..
T Consensus 232 i~kmSlSP-dg~~La~ih~sG~lsLW~iPsL~~ 263 (282)
T PF15492_consen 232 IFKMSLSP-DGSLLACIHFSGSLSLWEIPSLRL 263 (282)
T ss_pred eEEEEECC-CCCEEEEEEcCCeEEEEecCcchh
Confidence 99999999 999999999999999999965443
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.86 E-value=6.6e-07 Score=97.24 Aligned_cols=262 Identities=13% Similarity=0.221 Sum_probs=152.8
Q ss_pred cCCCCEEEEEe---------CCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeee
Q 005096 153 TPTGRRLITGS---------QSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKAN 223 (715)
Q Consensus 153 spdg~~Latgs---------~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~ 223 (715)
|+|+++++... ..+.+.|||+++++....... ...+....|+|+|+.|+... ++.|.++++.++.....
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~l 78 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQL 78 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEES
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEe
Confidence 57888777642 346799999999766554443 67788999999999998775 57899998877744433
Q ss_pred ecCC-----------------CCCeEEEEEecCCCEEEEEECC-Cc----------------------------------
Q 005096 224 KSAH-----------------KESVRDLSFCRTDLKFCSCSDD-TT---------------------------------- 251 (715)
Q Consensus 224 ~~~h-----------------~~~I~~l~~spd~~~Las~s~D-g~---------------------------------- 251 (715)
.... -+.-..+.||||+++|+....| ..
T Consensus 79 T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v 158 (353)
T PF00930_consen 79 TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRV 158 (353)
T ss_dssp ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EE
T ss_pred ccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCce
Confidence 2211 1233568899999998865432 12
Q ss_pred -EEEEECCCCeeEE-E-e---cccCCceEEEEEcCCCCEEEEE--eCCC---cEEEEECCCCceeEEec-cCCCce---E
Q 005096 252 -VKVWDFARCQEER-S-L---TGHGWDVKSVDWHPTKSLLVSG--GKDS---LVKLWDAKSGRELCSFH-GHKNMV---L 316 (715)
Q Consensus 252 -V~iwdl~~~~~~~-~-l---~~~~~~I~si~~spdg~~L~sg--s~Dg---~I~iwDl~s~~~~~~~~-~~~~~I---~ 316 (715)
+.|+|+++++... . . .....-+..+.|.++++.|++. ..+. .|.++|..++++...+. ....+| .
T Consensus 159 ~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~ 238 (353)
T PF00930_consen 159 SLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYD 238 (353)
T ss_dssp EEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSS
T ss_pred EEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeec
Confidence 3445554443321 1 1 1234457889999988844443 2222 46777888776543332 223333 2
Q ss_pred EEEEc-CCCC-EEEEEECCCe--EEEEECCCCeEEEEeecCCCCeEE-EEEccCCCCEEEEEeCCC--cEEEEEcCCC-C
Q 005096 317 CVKWN-QNGN-WVLTASKDQI--IKLYDIRAMKELESFRGHRKDVTA-LAWHPFHEEYFVSGSLDG--SIFHWLVGHE-T 388 (715)
Q Consensus 317 sl~~s-pdg~-~Lasgs~dg~--I~iwDl~t~~~~~~~~~h~~~V~~-l~~sp~~~~~l~sgs~DG--~I~iwd~~~~-~ 388 (715)
.+.|. +++. +|.....||. |.++|...+. ...+....-.|.. +.|+..++.+++++..++ .-.||.++.. .
T Consensus 239 ~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~-~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~ 317 (353)
T PF00930_consen 239 PPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK-PRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSG 317 (353)
T ss_dssp EEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE-EEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTET
T ss_pred ccccccCCCCEEEEEEEcCCCcEEEEEcccccc-eeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCC
Confidence 45554 5554 4555557774 5556666555 4456556666755 677775666666776633 4455554444 3
Q ss_pred ceEEEeeccCCCEEEEEEcCCCCEEEEEE
Q 005096 389 PQVEIHNVHDNTVWDLAWHPIGYLLCSGS 417 (715)
Q Consensus 389 ~~~~~~~~h~~~V~~l~~spdg~~L~sgs 417 (715)
...+.+.........+.|++++++++..+
T Consensus 318 ~~~~~LT~~~~~~~~~~~Spdg~y~v~~~ 346 (353)
T PF00930_consen 318 GEPKCLTCEDGDHYSASFSPDGKYYVDTY 346 (353)
T ss_dssp TEEEESSTTSSTTEEEEE-TTSSEEEEEE
T ss_pred CCeEeccCCCCCceEEEECCCCCEEEEEE
Confidence 33344433333336899999998877554
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.85 E-value=3e-06 Score=87.51 Aligned_cols=233 Identities=12% Similarity=0.062 Sum_probs=159.3
Q ss_pred CEEEEEEcCC-CCEEEEEeCCCc-EEEEeCCCCceeeeecCCCCCe--EEEEEecCCCEEEEEEC-----CCcEEEEECC
Q 005096 188 AIRSMVWSHN-DNWMVSGDDGGA-IKYWQNNMNNVKANKSAHKESV--RDLSFCRTDLKFCSCSD-----DTTVKVWDFA 258 (715)
Q Consensus 188 ~V~~l~~spd-g~~L~tgs~dg~-I~iwd~~~~~~~~~~~~h~~~I--~~l~~spd~~~Las~s~-----Dg~V~iwdl~ 258 (715)
....++.+++ ...++.+-.-|+ ..+||..+++....+....+.- -.-+|++||++|++.-. .|.|-|||..
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~ 85 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAA 85 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECc
Confidence 3456788884 456667766665 6789999988877765444332 24679999999998754 4789999998
Q ss_pred -CCeeEEEecccCCceEEEEEcCCCCEEEEEeC------------------CCcEEEEECCCCceeEEec----cCCCce
Q 005096 259 -RCQEERSLTGHGWDVKSVDWHPTKSLLVSGGK------------------DSLVKLWDAKSGRELCSFH----GHKNMV 315 (715)
Q Consensus 259 -~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~------------------Dg~I~iwDl~s~~~~~~~~----~~~~~I 315 (715)
+.+.+..+..+.-.-..|.+.+|++.|+++.. +-.|.+.|.++|+.+.... .|...|
T Consensus 86 ~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSi 165 (305)
T PF07433_consen 86 RGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSI 165 (305)
T ss_pred CCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccce
Confidence 77888888888877888999999988877631 2346667888888777643 367789
Q ss_pred EEEEEcCCCCEEEEEECCC-------eEEEEECCCCeEEEEee-------cCCCCeEEEEEccCCCCEEEEEeCCCcEEE
Q 005096 316 LCVKWNQNGNWVLTASKDQ-------IIKLYDIRAMKELESFR-------GHRKDVTALAWHPFHEEYFVSGSLDGSIFH 381 (715)
Q Consensus 316 ~sl~~spdg~~Lasgs~dg-------~I~iwDl~t~~~~~~~~-------~h~~~V~~l~~sp~~~~~l~sgs~DG~I~i 381 (715)
..+++..+|..++..-..| .|-+++.. +.+..+. .....|-+|+++.+++.+.+|+-..+.+.+
T Consensus 166 RHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g--~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~ 243 (305)
T PF07433_consen 166 RHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRG--GALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAV 243 (305)
T ss_pred eeEEecCCCcEEEEEecCCCCCccCCeEEEEcCC--CcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEE
Confidence 9999999987666554433 34444433 3233322 345678999999843445566667788999
Q ss_pred EEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCC
Q 005096 382 WLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNR 429 (715)
Q Consensus 382 wd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~ 429 (715)
||..++..+.... -..+..++...++ ++++.+ .|. +|.+..
T Consensus 244 ~d~~tg~~~~~~~---l~D~cGva~~~~~-f~~ssG-~G~--~~~~~~ 284 (305)
T PF07433_consen 244 WDAATGRLLGSVP---LPDACGVAPTDDG-FLVSSG-QGQ--LIRLSP 284 (305)
T ss_pred EECCCCCEeeccc---cCceeeeeecCCc-eEEeCC-Ccc--EEEccC
Confidence 9998876543332 3356777777666 455444 454 444433
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.2e-06 Score=99.25 Aligned_cols=266 Identities=11% Similarity=0.065 Sum_probs=164.0
Q ss_pred CCEEEEEeCCCeEEEEeCCCCceEEEEeccCCC------EE--EEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeecCC
Q 005096 156 GRRLITGSQSGEFTLWNGQSFNFEMILQAHDHA------IR--SMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAH 227 (715)
Q Consensus 156 g~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~------V~--~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~~h 227 (715)
+..|++++.++.|+-.|.++++.+-.+...... +. .+++. ++..+++++.++.|.-+|.++++.+..+...
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~ 139 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNN 139 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCC
Confidence 446777888899999999998887666543320 10 11111 2267888889999999999999888776543
Q ss_pred CCC-----eE-EEEEecCCCEEEEEE---------CCCcEEEEECCCCeeEEEecccCC--------------------c
Q 005096 228 KES-----VR-DLSFCRTDLKFCSCS---------DDTTVKVWDFARCQEERSLTGHGW--------------------D 272 (715)
Q Consensus 228 ~~~-----I~-~l~~spd~~~Las~s---------~Dg~V~iwdl~~~~~~~~l~~~~~--------------------~ 272 (715)
... +. ...+. +.+++.++ .++.|..+|.++++.+-.+..... .
T Consensus 140 ~~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 217 (488)
T cd00216 140 DQVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGT 217 (488)
T ss_pred CCcCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCC
Confidence 321 11 11222 24455543 367899999999988776643211 0
Q ss_pred e-EEEEEcCCCCEEEEEeCCC------------------cEEEEECCCCceeEEeccCCCceE------EEEEc----CC
Q 005096 273 V-KSVDWHPTKSLLVSGGKDS------------------LVKLWDAKSGRELCSFHGHKNMVL------CVKWN----QN 323 (715)
Q Consensus 273 I-~si~~spdg~~L~sgs~Dg------------------~I~iwDl~s~~~~~~~~~~~~~I~------sl~~s----pd 323 (715)
| .+.++++.+.++++++.|+ .|.-+|+++++.+..+......+. ...+. -+
T Consensus 218 vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~ 297 (488)
T cd00216 218 SWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKD 297 (488)
T ss_pred ccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccC
Confidence 1 1344555567788887665 699999999999887652211110 01111 23
Q ss_pred CC---EEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEE------------------eCCCcEEEE
Q 005096 324 GN---WVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSG------------------SLDGSIFHW 382 (715)
Q Consensus 324 g~---~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sg------------------s~DG~I~iw 382 (715)
+. ++++++.+|.|..+|.++++.+....... ..++.++ ..++.+ ..+|.|.-+
T Consensus 298 g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~---~~~~~~~---~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~Al 371 (488)
T cd00216 298 GKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVE---QPMAYDP---GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAAL 371 (488)
T ss_pred CCeeEEEEEECCCceEEEEECCCCcEeeEeEeec---cccccCC---ceEEEccccccccCcccccCCCCCCCceEEEEE
Confidence 43 67888899999999999999988765321 1122222 222221 235778888
Q ss_pred EcCCCCceEEEeecc-C------CCE--EEEEEcCCCCEEEEEECCCeEEEEecCCCCC
Q 005096 383 LVGHETPQVEIHNVH-D------NTV--WDLAWHPIGYLLCSGSNDHTTKFWCRNRPGD 432 (715)
Q Consensus 383 d~~~~~~~~~~~~~h-~------~~V--~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~~ 432 (715)
|..+++.+.+..... . ... ..+.. .+.+|++++.||.|+.+|.++.+.
T Consensus 372 D~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~--~g~~v~~g~~dG~l~ald~~tG~~ 428 (488)
T cd00216 372 DPKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT--AGNLVFAGAADGYFRAFDATTGKE 428 (488)
T ss_pred eCCCCcEeeEeeCCccccccccCCcccCcceEe--cCCeEEEECCCCeEEEEECCCCce
Confidence 888877666654320 0 111 11222 457888889999999999866443
|
The alignment model contains an 8-bladed beta-propeller. |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.8e-06 Score=100.76 Aligned_cols=237 Identities=13% Similarity=0.170 Sum_probs=153.5
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEEC----CC--
Q 005096 186 DHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDF----AR-- 259 (715)
Q Consensus 186 ~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl----~~-- 259 (715)
+..|.++.|.-+.+-|+++..+|.|.+-|.++...... ......|.+++|++|+..++..+.+.+|.+-+- -.
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eiv-g~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~ 146 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEIV-GNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEK 146 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcccccceeee-eeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhcc
Confidence 46799999999999999999999999998877654332 345778999999999999999998888776542 00
Q ss_pred -----------------CeeEEEecccC---------------------CceEEEEEcCCCCEEEEEe-----CCCcEEE
Q 005096 260 -----------------CQEERSLTGHG---------------------WDVKSVDWHPTKSLLVSGG-----KDSLVKL 296 (715)
Q Consensus 260 -----------------~~~~~~l~~~~---------------------~~I~si~~spdg~~L~sgs-----~Dg~I~i 296 (715)
++....|.+.. +.=++|+|--||.++++.. ....|++
T Consensus 147 ~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV 226 (1265)
T KOG1920|consen 147 PLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRV 226 (1265)
T ss_pred ccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEE
Confidence 11111222111 1123599999999998842 2378999
Q ss_pred EECCCCceeEEeccCCCceEEEEEcCCCCEEEEEE---CCCeEEEEECCCCeEEE----EeecCCCCeEEEEEccCCCCE
Q 005096 297 WDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTAS---KDQIIKLYDIRAMKELE----SFRGHRKDVTALAWHPFHEEY 369 (715)
Q Consensus 297 wDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs---~dg~I~iwDl~t~~~~~----~~~~h~~~V~~l~~sp~~~~~ 369 (715)
||-+ +..-..-....+.-.+++|-|.|.++++.- .|+.|.+|.-. |-.-. .+......|..++|+. +..+
T Consensus 227 ~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErN-GL~hg~f~l~~p~de~~ve~L~Wns-~sdi 303 (1265)
T KOG1920|consen 227 YDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERN-GLRHGEFVLPFPLDEKEVEELAWNS-NSDI 303 (1265)
T ss_pred eccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecC-CccccccccCCcccccchheeeecC-CCCc
Confidence 9977 433222233344557899999999998753 45678888743 43332 2333445599999998 7888
Q ss_pred EEE---EeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCC-CEEEEEECCCeEEEEec
Q 005096 370 FVS---GSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIG-YLLCSGSNDHTTKFWCR 427 (715)
Q Consensus 370 l~s---gs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg-~~L~sgs~Dg~I~iWdl 427 (715)
|++ ......|++|-+.+-..-.+......... -+.|+|.. ..|.....+|.+.++++
T Consensus 304 LAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~~-~~~W~p~~~~~L~v~~~sG~~~v~~~ 364 (1265)
T KOG1920|consen 304 LAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQKA-LLMWDPVTEKTLHVLRESGQRLVRDF 364 (1265)
T ss_pred eeeeecccccceEEEEEecCeEEEEEEEEeccccc-cccccCCCceeEEEEecCCcEEEEEE
Confidence 776 44444599998876543222211111111 16777752 33444445666555544
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.8e-08 Score=98.85 Aligned_cols=149 Identities=19% Similarity=0.287 Sum_probs=106.7
Q ss_pred CCCEEEEEeCCCcEEEEECCCCcee-EEeccCCCceEEEEEcCCCCEEEEEE-----CCCeEEEEECCCCeEEEEeecCC
Q 005096 281 TKSLLVSGGKDSLVKLWDAKSGREL-CSFHGHKNMVLCVKWNQNGNWVLTAS-----KDQIIKLYDIRAMKELESFRGHR 354 (715)
Q Consensus 281 dg~~L~sgs~Dg~I~iwDl~s~~~~-~~~~~~~~~I~sl~~spdg~~Lasgs-----~dg~I~iwDl~t~~~~~~~~~h~ 354 (715)
.++.++++..||.+.+++.+.-..+ ..+........+.++...++.|.++. .-+..++|+++-.+.+..-+...
T Consensus 100 ~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~ 179 (319)
T KOG4714|consen 100 TDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKAL 179 (319)
T ss_pred cCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeeccccccccccccccc
Confidence 4678999999999999998752111 11111111112233333445444432 23456677776555444444444
Q ss_pred CCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCC-CCEEEEEECCCeEEEEecCC
Q 005096 355 KDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPI-GYLLCSGSNDHTTKFWCRNR 429 (715)
Q Consensus 355 ~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd-g~~L~sgs~Dg~I~iWdl~~ 429 (715)
..|++++-+|....++++|+.||.|-+||.+.......++..|+..|+.+-|+|. ...|+++++||.+..||-+.
T Consensus 180 ~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 180 DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred ccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 5599999999888899999999999999999988888888999999999999996 68899999999999998763
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.4e-07 Score=105.53 Aligned_cols=182 Identities=23% Similarity=0.329 Sum_probs=134.2
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEE
Q 005096 186 DHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERS 265 (715)
Q Consensus 186 ~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~ 265 (715)
...++|++++ ++.|+.|+.+|.|++++....- .+...|... .-+|.++++|+.||+|.|..+-+.+...+
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~--~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~ 108 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQGNP--KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQ 108 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecCCcc--ccccccccc------ccCCceEEEecCCCcEEEeeccCCcccee
Confidence 3456777775 6899999999999999876543 223334333 55899999999999999999988777776
Q ss_pred ecccCCceEEEEEcCC-----CCEEEEEeCCCcEEEEECC--CCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEE
Q 005096 266 LTGHGWDVKSVDWHPT-----KSLLVSGGKDSLVKLWDAK--SGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKL 338 (715)
Q Consensus 266 l~~~~~~I~si~~spd-----g~~L~sgs~Dg~I~iwDl~--s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~i 338 (715)
+. ....+.+|+++|+ .+.+++|+.-| +.++.-+ ..+.-..+....+.|.+++|. |++||-++.+| |+|
T Consensus 109 ~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~G-v~v 183 (846)
T KOG2066|consen 109 YD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDG-VKV 183 (846)
T ss_pred Ee-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCC-cEE
Confidence 65 5678999999998 46889999888 8777533 122222456678899999996 78888887665 999
Q ss_pred EECCCCeEEEEeecCCCC------eEEEEEccCCCCEEEEEeCCCcEEEEEcC
Q 005096 339 YDIRAMKELESFRGHRKD------VTALAWHPFHEEYFVSGSLDGSIFHWLVG 385 (715)
Q Consensus 339 wDl~t~~~~~~~~~h~~~------V~~l~~sp~~~~~l~sgs~DG~I~iwd~~ 385 (715)
||+.+.+.+..+...... -..+.|.+ +..|+.|=.| +|+|..++
T Consensus 184 yd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~--~~~LVIGW~d-~v~i~~I~ 233 (846)
T KOG2066|consen 184 YDTPTRQRLTNIPPPSQSVRPELFPPHLHWQD--EDRLVIGWGD-SVKICSIK 233 (846)
T ss_pred EeccccceeeccCCCCCCCCcccCCCceEecC--CCeEEEecCC-eEEEEEEe
Confidence 999998888777644333 34677874 4555555444 78888886
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.8e-09 Score=118.75 Aligned_cols=197 Identities=15% Similarity=0.227 Sum_probs=146.3
Q ss_pred CceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCC--cEE
Q 005096 176 FNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDT--TVK 253 (715)
Q Consensus 176 ~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg--~V~ 253 (715)
.+..+.+..|+...+|++|+-+.++|++|+..|.|++|++.++.......+|...|+.+.-+.|+..+++.+.-. ...
T Consensus 1091 Fr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Plsa 1170 (1516)
T KOG1832|consen 1091 FRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSA 1170 (1516)
T ss_pred cccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHH
Confidence 345566778889999999999999999999999999999999999999999999999999999998877665533 477
Q ss_pred EEECCC-CeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEe-c---cCCCceEEEEEcCCCCEEE
Q 005096 254 VWDFAR-CQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSF-H---GHKNMVLCVKWNQNGNWVL 328 (715)
Q Consensus 254 iwdl~~-~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~-~---~~~~~I~sl~~spdg~~La 328 (715)
+|++.+ +...+++. .-.++.|+..-..-+.|+......|||+.++..+.++ . +....-++..|+|+.++|+
T Consensus 1171 LW~~~s~~~~~Hsf~----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl 1246 (1516)
T KOG1832|consen 1171 LWDASSTGGPRHSFD----EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL 1246 (1516)
T ss_pred HhccccccCcccccc----ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe
Confidence 999853 34444444 3457888866554555666677899999998876653 2 2223347889999988776
Q ss_pred EEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCC
Q 005096 329 TASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHET 388 (715)
Q Consensus 329 sgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~ 388 (715)
.|| .+||++..+.++.|...... ..=.|+| ++.-++..+ .|||+++-+
T Consensus 1247 ---ndG--vLWDvR~~~aIh~FD~ft~~-~~G~FHP-~g~eVIINS-----EIwD~RTF~ 1294 (1516)
T KOG1832|consen 1247 ---NDG--VLWDVRIPEAIHRFDQFTDY-GGGGFHP-SGNEVIINS-----EIWDMRTFK 1294 (1516)
T ss_pred ---eCc--eeeeeccHHHHhhhhhheec-ccccccC-CCceEEeec-----hhhhhHHHH
Confidence 355 58999988777777655522 2335888 555555544 378887654
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.5e-07 Score=106.10 Aligned_cols=182 Identities=13% Similarity=0.188 Sum_probs=140.9
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEE
Q 005096 197 NDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSV 276 (715)
Q Consensus 197 dg~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si 276 (715)
+...++.|+....+..+|+++.+...........|.-++ .+++++++|...|+|.+-|.++.+.++++.+|.+.|.++
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR--~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDf 223 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMR--YNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDF 223 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEE--ecCcEEEeecccceEEeecCCcCceeeeeeccccceeee
Confidence 345677777777888889988877776655555555554 478899999999999999999999999999999999988
Q ss_pred EEcCCCCEEEEEeC---------CCcEEEEECCCCceeEEeccCCCceEEEEEcCC-CCEEEEEECCCeEEEEECCCCe-
Q 005096 277 DWHPTKSLLVSGGK---------DSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQN-GNWVLTASKDQIIKLYDIRAMK- 345 (715)
Q Consensus 277 ~~spdg~~L~sgs~---------Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spd-g~~Lasgs~dg~I~iwDl~t~~- 345 (715)
+.. |++|++++. |..|+|||+|.-+.+.-+.-+.+. .-+.|.|. ...+++++..|...+.|..+..
T Consensus 224 Dv~--GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsN 300 (1118)
T KOG1275|consen 224 DVQ--GNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSN 300 (1118)
T ss_pred ecc--CCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCC
Confidence 876 889998875 556899999987776655433332 45667774 3568888889999999944322
Q ss_pred ---EEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEc
Q 005096 346 ---ELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLV 384 (715)
Q Consensus 346 ---~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~ 384 (715)
.+..+......+..+.+++ +++.++.|..+|.|.+|.-
T Consensus 301 P~~~~~~v~p~~s~i~~fDiSs-n~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 301 PPAGVKMVNPNGSGISAFDISS-NGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred CccceeEEccCCCcceeEEecC-CCceEEEecccCcEeeecC
Confidence 2334444556699999999 9999999999999999973
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.2e-07 Score=99.32 Aligned_cols=210 Identities=11% Similarity=0.106 Sum_probs=152.4
Q ss_pred ecCCCCccEEEEEEcCCCCEEEEEeC-CCeEEEEeCCCCceEEEEecc--CCCEEEEEEcCCC--CEEEE-EeCCCcEEE
Q 005096 139 SLNKNRCSINRVLWTPTGRRLITGSQ-SGEFTLWNGQSFNFEMILQAH--DHAIRSMVWSHND--NWMVS-GDDGGAIKY 212 (715)
Q Consensus 139 ~l~~H~~~I~~l~~spdg~~Latgs~-dg~I~Iwd~~~~~~~~~l~~h--~~~V~~l~~spdg--~~L~t-gs~dg~I~i 212 (715)
.+..|...|.+++.+-|+.++.+.+. |..++++|+++...+.-++.- .+.+.++ .++.. ..|++ ...++.|.|
T Consensus 48 hFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv-~skGd~~s~IAVs~~~sg~i~V 126 (558)
T KOG0882|consen 48 HFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEWV-TSKGDKISLIAVSLFKSGKIFV 126 (558)
T ss_pred hhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCCCceEEe-cCCCCeeeeEEeecccCCCcEE
Confidence 45678888999999999999999777 999999999887665443322 2222221 12211 13433 346689999
Q ss_pred EeCCCC--ceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCC------CeeEE---------EecccCCceEE
Q 005096 213 WQNNMN--NVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFAR------CQEER---------SLTGHGWDVKS 275 (715)
Q Consensus 213 wd~~~~--~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~------~~~~~---------~l~~~~~~I~s 275 (715)
+|-... ........|...|.++.+.+.+..+++....|.|..|..+. .+... .+...+....+
T Consensus 127 vD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts 206 (558)
T KOG0882|consen 127 VDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTS 206 (558)
T ss_pred ECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccc
Confidence 986544 33444567899999999999999999999999999998762 11111 12233456789
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccC---------------------------------CCceEEEEEcC
Q 005096 276 VDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGH---------------------------------KNMVLCVKWNQ 322 (715)
Q Consensus 276 i~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~---------------------------------~~~I~sl~~sp 322 (715)
+.|++++..+.+-+.|..|+++++++++.++.+... ...-+.+.|..
T Consensus 207 ~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fde 286 (558)
T KOG0882|consen 207 FEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDE 286 (558)
T ss_pred eEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcC
Confidence 999999999999999999999999998876554311 11235677888
Q ss_pred CCCEEEEEECCCeEEEEECCCCeEEEEe
Q 005096 323 NGNWVLTASKDQIIKLYDIRAMKELESF 350 (715)
Q Consensus 323 dg~~Lasgs~dg~I~iwDl~t~~~~~~~ 350 (715)
.+++|+.++.=| |+|.++.++++++.+
T Consensus 287 s~~flly~t~~g-ikvin~~tn~v~ri~ 313 (558)
T KOG0882|consen 287 SGNFLLYGTILG-IKVINLDTNTVVRIL 313 (558)
T ss_pred CCCEEEeeccee-EEEEEeecCeEEEEe
Confidence 999999998665 889999988877665
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.78 E-value=9.4e-07 Score=99.58 Aligned_cols=207 Identities=12% Similarity=0.173 Sum_probs=142.7
Q ss_pred EEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCC-EEEEEEcCCCCEEEEEeCCC-----cEEEEeCCCC---c--
Q 005096 151 LWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHA-IRSMVWSHNDNWMVSGDDGG-----AIKYWQNNMN---N-- 219 (715)
Q Consensus 151 ~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~-V~~l~~spdg~~L~tgs~dg-----~I~iwd~~~~---~-- 219 (715)
+|++.+..+|.|+.+|.|.+.+- ..+.+..+..+... |..+....+.++|++.+.|+ .|+||+++.- +
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP 108 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSP 108 (933)
T ss_pred EEcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCc
Confidence 46778889999999999998873 34556778888777 44444333446787776664 4899997643 1
Q ss_pred -ee--eeec-----CCCCCeEEEEEecCCCEEEEEECCCcEEEEEC----CCCeeEEEecccCCceEEEEEcCCCCEEEE
Q 005096 220 -VK--ANKS-----AHKESVRDLSFCRTDLKFCSCSDDTTVKVWDF----ARCQEERSLTGHGWDVKSVDWHPTKSLLVS 287 (715)
Q Consensus 220 -~~--~~~~-----~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl----~~~~~~~~l~~~~~~I~si~~spdg~~L~s 287 (715)
+. ..+. .....+.+++++.+-+.+|+|-.||.|.++.- +.+.........+..|+.+++..+++.++.
T Consensus 109 ~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lF 188 (933)
T KOG2114|consen 109 QCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLF 188 (933)
T ss_pred ceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEE
Confidence 22 0111 13457889999999999999999999999853 222233333445678999999999887444
Q ss_pred EeCCCcEEEEECCCCc-eeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEee-cCCCCeEE
Q 005096 288 GGKDSLVKLWDAKSGR-ELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFR-GHRKDVTA 359 (715)
Q Consensus 288 gs~Dg~I~iwDl~s~~-~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~-~h~~~V~~ 359 (715)
+.....|.+|.+.... .+..+..+...+.|.++++....|++++ +..|.+||.........|. ++......
T Consensus 189 v~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~cfaf~~g~kk~~~~ 261 (933)
T KOG2114|consen 189 VATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGPCFAFEVGEKKEMLV 261 (933)
T ss_pred EEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCcceeeeecCCCeEEEEE
Confidence 4444679999998433 2445677888899999987555466554 5679999998766666666 55544333
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.75 E-value=5.8e-07 Score=93.34 Aligned_cols=255 Identities=13% Similarity=0.086 Sum_probs=151.4
Q ss_pred EEEEeCCCCceEEEEeccCCCEEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCC-CEEEE
Q 005096 168 FTLWNGQSFNFEMILQAHDHAIRSMVWSHNDN-WMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTD-LKFCS 245 (715)
Q Consensus 168 I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~-~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~-~~Las 245 (715)
|++.+..+.+....+..+...|..++|++..+ +|..++.+..|+|.|+++...+..+..+ ..+++++|+-|+ ++|+.
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYa 253 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYA 253 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEE
Confidence 55555555555556677788899999999877 7788999999999999999888888776 889999999876 56778
Q ss_pred EECCCcEEEEECCCCeeE-EEecc--cCCceEEEEE------cCCCCEEEEEeCCCcEEEEECCCC----ceeEEeccCC
Q 005096 246 CSDDTTVKVWDFARCQEE-RSLTG--HGWDVKSVDW------HPTKSLLVSGGKDSLVKLWDAKSG----RELCSFHGHK 312 (715)
Q Consensus 246 ~s~Dg~V~iwdl~~~~~~-~~l~~--~~~~I~si~~------spdg~~L~sgs~Dg~I~iwDl~s~----~~~~~~~~~~ 312 (715)
|..+|.|.|||++..+-. ..+.+ ....|..|+. .+.+.+|+..+.+ +..|++.-. -++..+. ..
T Consensus 254 Gl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele-~p 330 (463)
T KOG1645|consen 254 GLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELE-PP 330 (463)
T ss_pred eccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccC-CC
Confidence 888999999999654322 12211 2233443332 2234455544432 556655421 2222222 24
Q ss_pred CceEEEEEcCCCCEEEEEECCC-------eE-EEEECCCCeEEEEee-cC-CCC------eEEEEEccCCCCEEEEEeCC
Q 005096 313 NMVLCVKWNQNGNWVLTASKDQ-------II-KLYDIRAMKELESFR-GH-RKD------VTALAWHPFHEEYFVSGSLD 376 (715)
Q Consensus 313 ~~I~sl~~spdg~~Lasgs~dg-------~I-~iwDl~t~~~~~~~~-~h-~~~------V~~l~~sp~~~~~l~sgs~D 376 (715)
+...++.+.+..+.++...... .| .--|.++|..+...+ .+ .+. -..+.-.+++..++.++++.
T Consensus 331 G~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~t 410 (463)
T KOG1645|consen 331 GICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDST 410 (463)
T ss_pred cceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCc
Confidence 4455555655445555443221 11 112333444333222 11 111 11122223233344455666
Q ss_pred CcEEEEEcCCCCceEEEeeccCCCEEEEEEcCC--CCEEEEEECCCeEEEEecCC
Q 005096 377 GSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPI--GYLLCSGSNDHTTKFWCRNR 429 (715)
Q Consensus 377 G~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd--g~~L~sgs~Dg~I~iWdl~~ 429 (715)
+.+.+||..+......+.. +..|.+++.... +.+|++-. |..++||+.+.
T Consensus 411 n~lil~D~~s~evvQ~l~~--~epv~Dicp~~~n~~syLa~LT-d~~v~Iyk~es 462 (463)
T KOG1645|consen 411 NELILQDPHSFEVVQTLAL--SEPVLDICPNDTNGSSYLALLT-DDRVHIYKNES 462 (463)
T ss_pred ceeEEeccchhheeeeccc--CcceeecceeecCCcchhhhee-cceEEEEecCC
Confidence 7899999988776655543 468888876543 34555554 77899997653
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.2e-06 Score=98.79 Aligned_cols=205 Identities=15% Similarity=0.186 Sum_probs=138.3
Q ss_pred EEcCCCCEEEEEeCCCcEEEEeCCCCceeeeecCCCCC-eEEEEEecCCCEEEEEECCC-----cEEEEECCCC------
Q 005096 193 VWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKES-VRDLSFCRTDLKFCSCSDDT-----TVKVWDFARC------ 260 (715)
Q Consensus 193 ~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~-I~~l~~spd~~~Las~s~Dg-----~V~iwdl~~~------ 260 (715)
+|++.+..++.|+.+|.|.+.+-. -.....+..+... |..+....+.++|++.+.|+ .|+|||++..
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~s-~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP 108 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNSS-FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSP 108 (933)
T ss_pred EEcCCCceEEEeeccccEEEeccc-ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCc
Confidence 456778899999999998887633 2333555666666 55554444447788877664 4999999543
Q ss_pred eeE--EEecc-----cCCceEEEEEcCCCCEEEEEeCCCcEEEEE--CCC--CceeEEeccCCCceEEEEEcCCCCEEEE
Q 005096 261 QEE--RSLTG-----HGWDVKSVDWHPTKSLLVSGGKDSLVKLWD--AKS--GRELCSFHGHKNMVLCVKWNQNGNWVLT 329 (715)
Q Consensus 261 ~~~--~~l~~-----~~~~I~si~~spdg~~L~sgs~Dg~I~iwD--l~s--~~~~~~~~~~~~~I~sl~~spdg~~Las 329 (715)
.++ ..+.. ....+.+++++.+-+.+|+|-.||.|.++. +.. +.........+..|+.+++..++..++.
T Consensus 109 ~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lF 188 (933)
T KOG2114|consen 109 QCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLF 188 (933)
T ss_pred ceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEE
Confidence 122 12222 345688999999999999999999999984 321 2222223345678999999999887444
Q ss_pred EECCCeEEEEECCCCe-EEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCC
Q 005096 330 ASKDQIIKLYDIRAMK-ELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNT 400 (715)
Q Consensus 330 gs~dg~I~iwDl~t~~-~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~ 400 (715)
+.....|.+|.+.... .+..+..+...+.|.++++....+++++ +..|.+||.+..+....+..+|+..
T Consensus 189 v~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~--~e~l~fY~sd~~~~cfaf~~g~kk~ 258 (933)
T KOG2114|consen 189 VATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG--SEFLYFYDSDGRGPCFAFEVGEKKE 258 (933)
T ss_pred EEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec--CceEEEEcCCCcceeeeecCCCeEE
Confidence 4456689999998433 2555778888999999997333344443 3479999988766666655455443
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.1e-06 Score=97.17 Aligned_cols=155 Identities=15% Similarity=0.202 Sum_probs=106.6
Q ss_pred CccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEe-ccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCce--
Q 005096 144 RCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQ-AHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNV-- 220 (715)
Q Consensus 144 ~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~-~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~-- 220 (715)
...|.--+++..+++|+.|++.|.|++|+...++..+.-. +..+.+..+..+.++.++|.|+..|.|.|+.++....
T Consensus 33 ~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~ 112 (726)
T KOG3621|consen 33 PARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRD 112 (726)
T ss_pred cceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCc
Confidence 3445555667788999999999999999977765444332 2445566677888888889999999999998766321
Q ss_pred -e--ee-ecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCC----eeEEEecccCCceEEEEEcCCCCEEEEEeCCC
Q 005096 221 -K--AN-KSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARC----QEERSLTGHGWDVKSVDWHPTKSLLVSGGKDS 292 (715)
Q Consensus 221 -~--~~-~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~----~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg 292 (715)
. .. -+.|+..|++++|+.|+..|++|...|+|.+-.++.. .....+......|..|++. ..+|++++.-.
T Consensus 113 ~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~--q~~LLVStl~r 190 (726)
T KOG3621|consen 113 LDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL--QSYLLVSTLTR 190 (726)
T ss_pred ceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc--cceehHhhhhh
Confidence 1 11 1347889999999999999999999999999888762 1122333455677777766 33444433323
Q ss_pred cEEEEECCC
Q 005096 293 LVKLWDAKS 301 (715)
Q Consensus 293 ~I~iwDl~s 301 (715)
..+++++.
T Consensus 191 -~~Lc~tE~ 198 (726)
T KOG3621|consen 191 -CILCQTEA 198 (726)
T ss_pred -hheeecch
Confidence 33455543
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=98.69 E-value=8.7e-06 Score=92.34 Aligned_cols=229 Identities=10% Similarity=0.073 Sum_probs=147.4
Q ss_pred CEEEEEeCCCeEEEEeCCCCceEEEEeccCCC-----EE-EEEEcCCCCEEEEEe---------CCCcEEEEeCCCCcee
Q 005096 157 RRLITGSQSGEFTLWNGQSFNFEMILQAHDHA-----IR-SMVWSHNDNWMVSGD---------DGGAIKYWQNNMNNVK 221 (715)
Q Consensus 157 ~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~-----V~-~l~~spdg~~L~tgs---------~dg~I~iwd~~~~~~~ 221 (715)
..+++++.+|.|+.+|.++++.+-.+...... +. +..+. +.++++++ .++.|..+|.++++.+
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~ 188 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLL 188 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCcee
Confidence 57888899999999999999988777654321 11 12222 24555553 3678889999998877
Q ss_pred eeecCCCCC--------------------e-EEEEEecCCCEEEEEECCC------------------cEEEEECCCCee
Q 005096 222 ANKSAHKES--------------------V-RDLSFCRTDLKFCSCSDDT------------------TVKVWDFARCQE 262 (715)
Q Consensus 222 ~~~~~h~~~--------------------I-~~l~~spd~~~Las~s~Dg------------------~V~iwdl~~~~~ 262 (715)
..+...... | ...++...+..++.++.|+ .|..+|+++++.
T Consensus 189 W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~ 268 (488)
T cd00216 189 WRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKV 268 (488)
T ss_pred eEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCE
Confidence 765432110 1 1233444556777777665 799999999998
Q ss_pred EEEecccCCceE------EEEEc----CCCC---EEEEEeCCCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEE
Q 005096 263 ERSLTGHGWDVK------SVDWH----PTKS---LLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLT 329 (715)
Q Consensus 263 ~~~l~~~~~~I~------si~~s----pdg~---~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Las 329 (715)
+-.+......+. ...+. -++. .+++++.+|.|..+|.++|+.+...... ...++.++ +.+++
T Consensus 269 ~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~---~~~~~~~~--~~vyv 343 (488)
T cd00216 269 KWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV---EQPMAYDP--GLVYL 343 (488)
T ss_pred EEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee---ccccccCC--ceEEE
Confidence 877643211111 01111 1333 6788889999999999999988776422 11233333 33333
Q ss_pred E------------------ECCCeEEEEECCCCeEEEEeecCC--------CCe--EEEEEccCCCCEEEEEeCCCcEEE
Q 005096 330 A------------------SKDQIIKLYDIRAMKELESFRGHR--------KDV--TALAWHPFHEEYFVSGSLDGSIFH 381 (715)
Q Consensus 330 g------------------s~dg~I~iwDl~t~~~~~~~~~h~--------~~V--~~l~~sp~~~~~l~sgs~DG~I~i 381 (715)
+ ..+|.|.-+|+++++.+.+..... ... ..+.. .+.+|++++.||.|+.
T Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~---~g~~v~~g~~dG~l~a 420 (488)
T cd00216 344 GAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT---AGNLVFAGAADGYFRA 420 (488)
T ss_pred ccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEe---cCCeEEEECCCCeEEE
Confidence 2 246789999999999888776431 111 12222 4578888889999999
Q ss_pred EEcCCCCceEEEee
Q 005096 382 WLVGHETPQVEIHN 395 (715)
Q Consensus 382 wd~~~~~~~~~~~~ 395 (715)
+|.++++.+.+...
T Consensus 421 ld~~tG~~lW~~~~ 434 (488)
T cd00216 421 FDATTGKELWKFRT 434 (488)
T ss_pred EECCCCceeeEEEC
Confidence 99999988777654
|
The alignment model contains an 8-bladed beta-propeller. |
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.67 E-value=6.6e-07 Score=92.92 Aligned_cols=242 Identities=10% Similarity=0.100 Sum_probs=144.8
Q ss_pred ecCCCCccEEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCC-CEEEEEeCCCcEEEEeCC
Q 005096 139 SLNKNRCSINRVLWTPTGR-RLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHND-NWMVSGDDGGAIKYWQNN 216 (715)
Q Consensus 139 ~l~~H~~~I~~l~~spdg~-~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg-~~L~tgs~dg~I~iwd~~ 216 (715)
.+.+|..-|..++||+..+ +|..++.+.+|+|.|+++...+..+..+ ..+++++|.-|+ ++|+.|..+|.|.|||+.
T Consensus 188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R 266 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMR 266 (463)
T ss_pred cccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEcc
Confidence 4677888999999999887 7889999999999999999999888887 889999998775 577888899999999987
Q ss_pred CCce-eeeec--CCCCCeEEEEEe------cCCCEEEEEECCCcEEEEECCC--CeeEEEec-ccCCceEEEEEcCCCCE
Q 005096 217 MNNV-KANKS--AHKESVRDLSFC------RTDLKFCSCSDDTTVKVWDFAR--CQEERSLT-GHGWDVKSVDWHPTKSL 284 (715)
Q Consensus 217 ~~~~-~~~~~--~h~~~I~~l~~s------pd~~~Las~s~Dg~V~iwdl~~--~~~~~~l~-~~~~~I~si~~spdg~~ 284 (715)
..+- +..+. .....|..|+.- +.+.+|+..+.+ +..|++.- ......+. +..+...++.+++..+.
T Consensus 267 ~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismqy~~~snh 344 (463)
T KOG1645|consen 267 QPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQYHGVSNH 344 (463)
T ss_pred CCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeeeecCccce
Confidence 6432 11111 122333333322 233444444433 55566522 11112121 12334455566554454
Q ss_pred EEEEeCC-C------cEEE-EECCCCceeEEec-cC-CCc------eEEEEEcCCCCEEE-EEECCCeEEEEECCCCeEE
Q 005096 285 LVSGGKD-S------LVKL-WDAKSGRELCSFH-GH-KNM------VLCVKWNQNGNWVL-TASKDQIIKLYDIRAMKEL 347 (715)
Q Consensus 285 L~sgs~D-g------~I~i-wDl~s~~~~~~~~-~~-~~~------I~sl~~spdg~~La-sgs~dg~I~iwDl~t~~~~ 347 (715)
++..... . .|-. -|.++|..+...+ .+ ... -..+.-.++.++|+ ++...+.+.+||..+++.+
T Consensus 345 ~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s~evv 424 (463)
T KOG1645|consen 345 LLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHSFEVV 424 (463)
T ss_pred EEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccchhhee
Confidence 4443322 1 0111 1223343332221 11 000 01111223445555 4556678999999999999
Q ss_pred EEeecCCCCeEEEEEccCCCC-EEEEEeCCCcEEEEEcC
Q 005096 348 ESFRGHRKDVTALAWHPFHEE-YFVSGSLDGSIFHWLVG 385 (715)
Q Consensus 348 ~~~~~h~~~V~~l~~sp~~~~-~l~sgs~DG~I~iwd~~ 385 (715)
.++... ..|.+++....++. +|++-. |..++||..+
T Consensus 425 Q~l~~~-epv~Dicp~~~n~~syLa~LT-d~~v~Iyk~e 461 (463)
T KOG1645|consen 425 QTLALS-EPVLDICPNDTNGSSYLALLT-DDRVHIYKNE 461 (463)
T ss_pred eecccC-cceeecceeecCCcchhhhee-cceEEEEecC
Confidence 888744 77888877654444 555544 5578887654
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.66 E-value=6.5e-07 Score=100.21 Aligned_cols=182 Identities=13% Similarity=0.197 Sum_probs=132.2
Q ss_pred CccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeee
Q 005096 144 RCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKAN 223 (715)
Q Consensus 144 ~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~ 223 (715)
.+.|+|++++ +++|+.|+.+|.|++++....- ++...|... ..+|.++++|+.||+|.|..+.+.+....
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~--~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~ 108 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQGNP--KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQ 108 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecCCcc--ccccccccc------ccCCceEEEecCCCcEEEeeccCCcccee
Confidence 3456777775 5689999999999999866432 333334333 55799999999999999998888776655
Q ss_pred ecCCCCCeEEEEEecC-----CCEEEEEECCCcEEEEECC--CCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEE
Q 005096 224 KSAHKESVRDLSFCRT-----DLKFCSCSDDTTVKVWDFA--RCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKL 296 (715)
Q Consensus 224 ~~~h~~~I~~l~~spd-----~~~Las~s~Dg~V~iwdl~--~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~i 296 (715)
+ .....+.+|+++|| .+.+++|+.-| +.++.-+ ..+....+....+.|.++.|. |+++|-++++| |++
T Consensus 109 ~-df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~G-v~v 183 (846)
T KOG2066|consen 109 Y-DFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDG-VKV 183 (846)
T ss_pred E-ecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCC-cEE
Confidence 4 45678999999997 46799999888 7776531 111122455677899999998 88999998877 999
Q ss_pred EECCCCceeEEeccCCCc------eEEEEEcCCCCEEEEEECCCeEEEEECC
Q 005096 297 WDAKSGRELCSFHGHKNM------VLCVKWNQNGNWVLTASKDQIIKLYDIR 342 (715)
Q Consensus 297 wDl~s~~~~~~~~~~~~~------I~sl~~spdg~~Lasgs~dg~I~iwDl~ 342 (715)
||+.+++.+..+...... -..+.|.++. .|+.|- ..+|+|..++
T Consensus 184 yd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~-~LVIGW-~d~v~i~~I~ 233 (846)
T KOG2066|consen 184 YDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDED-RLVIGW-GDSVKICSIK 233 (846)
T ss_pred EeccccceeeccCCCCCCCCcccCCCceEecCCC-eEEEec-CCeEEEEEEe
Confidence 999988877766533322 3457787554 455554 4578888887
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.66 E-value=3.3e-05 Score=80.86 Aligned_cols=243 Identities=9% Similarity=0.065 Sum_probs=152.3
Q ss_pred EEEEcCCCCEEEEEeC----------CCeEEEEeCCCCceEEEEeccCC-C------EEEEEEcCCCCEEEEEeC--CCc
Q 005096 149 RVLWTPTGRRLITGSQ----------SGEFTLWNGQSFNFEMILQAHDH-A------IRSMVWSHNDNWMVSGDD--GGA 209 (715)
Q Consensus 149 ~l~~spdg~~Latgs~----------dg~I~Iwd~~~~~~~~~l~~h~~-~------V~~l~~spdg~~L~tgs~--dg~ 209 (715)
.+.+++|++.+++++. .-.|.+||..+......+..-.. . ...++++.|++++++... .-+
T Consensus 40 ~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~S 119 (342)
T PF06433_consen 40 NVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATS 119 (342)
T ss_dssp EEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEE
T ss_pred ceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCe
Confidence 3667899998887532 34699999999988776654332 1 224678889998877543 467
Q ss_pred EEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECC-CCeeEEEe----cccCCce-EEEEEcCCCC
Q 005096 210 IKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFA-RCQEERSL----TGHGWDV-KSVDWHPTKS 283 (715)
Q Consensus 210 I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~-~~~~~~~l----~~~~~~I-~si~~spdg~ 283 (715)
|.|.|+..++.+..+..- .+..+--+ ....|.+.|.||++....+. .++...+. ......+ ..-++..++.
T Consensus 120 VtVVDl~~~kvv~ei~~P--GC~~iyP~-~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~ 196 (342)
T PF06433_consen 120 VTVVDLAAKKVVGEIDTP--GCWLIYPS-GNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGG 196 (342)
T ss_dssp EEEEETTTTEEEEEEEGT--SEEEEEEE-ETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTT
T ss_pred EEEEECCCCceeeeecCC--CEEEEEec-CCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCC
Confidence 899999998887765422 22222222 23568888999999999886 44443221 1122222 2334445556
Q ss_pred EEEEEeCCCcEEEEECCCCcee--EEeccC------CC----ceEEEEEcCCCCEEEEEECCC----------eEEEEEC
Q 005096 284 LLVSGGKDSLVKLWDAKSGREL--CSFHGH------KN----MVLCVKWNQNGNWVLTASKDQ----------IIKLYDI 341 (715)
Q Consensus 284 ~L~sgs~Dg~I~iwDl~s~~~~--~~~~~~------~~----~I~sl~~spdg~~Lasgs~dg----------~I~iwDl 341 (715)
.++..+.+|.|+-.|+...... ..+... .+ .-.-+++++..+.|++.-..| .|.++|+
T Consensus 197 ~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~ 276 (342)
T PF06433_consen 197 RLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDL 276 (342)
T ss_dssp EEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEET
T ss_pred eEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEEC
Confidence 6777888999999998765422 122110 11 123477777666666532211 6899999
Q ss_pred CCCeEEEEeecCCCCeEEEEEccCCCCEEEEEe-CCCcEEEEEcCCCCceEEEee
Q 005096 342 RAMKELESFRGHRKDVTALAWHPFHEEYFVSGS-LDGSIFHWLVGHETPQVEIHN 395 (715)
Q Consensus 342 ~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs-~DG~I~iwd~~~~~~~~~~~~ 395 (715)
.+.+.+.++.. ...+.+|.++.++.-+|++.+ .++.|.|||..+++.+..+..
T Consensus 277 ~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 277 KTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp TTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred CCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence 99999999874 345779999987666777654 578999999999876655543
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.64 E-value=6.9e-08 Score=98.17 Aligned_cols=147 Identities=18% Similarity=0.243 Sum_probs=112.9
Q ss_pred EEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC----ceeeeecCCCCCeEEEEE
Q 005096 161 TGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN----NVKANKSAHKESVRDLSF 236 (715)
Q Consensus 161 tgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~----~~~~~~~~h~~~I~~l~~ 236 (715)
+.+.+-.|-|-|++++... .+. ..+.|.++.|.-.+++++.|+.+|.|.++|+... ........|...|+++..
T Consensus 229 s~G~sqqv~L~nvetg~~q-sf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~ 306 (425)
T KOG2695|consen 229 SVGLSQQVLLTNVETGHQQ-SFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQI 306 (425)
T ss_pred cccccceeEEEEeeccccc-ccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhh
Confidence 3344445777777765332 222 4677889999988999999999999999998765 223333468899999988
Q ss_pred ec-CCCEEEEEECCCcEEEEECCCCee---EEEecccCCceEEE--EEcCCCCEEEEEeCCCcEEEEECCCCceeEEec
Q 005096 237 CR-TDLKFCSCSDDTTVKVWDFARCQE---ERSLTGHGWDVKSV--DWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFH 309 (715)
Q Consensus 237 sp-d~~~Las~s~Dg~V~iwdl~~~~~---~~~l~~~~~~I~si--~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~ 309 (715)
.. ++.+|.+.+.+|+|++||++.-++ +..+.+|.+.-.-+ .+++....++++++|...+||.++++..+.++.
T Consensus 307 Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tip 385 (425)
T KOG2695|consen 307 LQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIP 385 (425)
T ss_pred hccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccC
Confidence 77 788999999999999999987666 77788776544433 345566788899999999999999999888765
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.5e-06 Score=97.26 Aligned_cols=268 Identities=11% Similarity=0.093 Sum_probs=159.0
Q ss_pred EEEEEcCCCCEEEEEeC----CCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeee
Q 005096 148 NRVLWTPTGRRLITGSQ----SGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKAN 223 (715)
Q Consensus 148 ~~l~~spdg~~Latgs~----dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~ 223 (715)
+-++|+|...++++++. .|.|.||- ++++..+... ..-.+++++|++..-.|+.|-.-|.+.+|...+.+....
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv 96 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT-YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTV 96 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc-cceehhhhccChHHHHHhhccccceeEEEecCCceeeee
Confidence 44579999999988864 58888884 4444322221 122356799999988889999999999999988888777
Q ss_pred ecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEec--cc--CC--ceEEEEEcCCCC------EEEEEeCC
Q 005096 224 KSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLT--GH--GW--DVKSVDWHPTKS------LLVSGGKD 291 (715)
Q Consensus 224 ~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~--~~--~~--~I~si~~spdg~------~L~sgs~D 291 (715)
...|...|..+.|+++|..++++..-|.|.+|.+.....+.... .| .. ...|..+++++. ..++.+++
T Consensus 97 ~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~laKaaVtgDe 176 (1416)
T KOG3617|consen 97 VETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYDREEKFKLAKAAVTGDE 176 (1416)
T ss_pred ccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCCChHHhhhhhhhhccCch
Confidence 78899999999999999999999999999999875332222211 11 11 234555566532 23344444
Q ss_pred CcEE-EEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEE
Q 005096 292 SLVK-LWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYF 370 (715)
Q Consensus 292 g~I~-iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l 370 (715)
..+- .++.+.....+... + .=.++|..++.++.+|+|+..|-. +++....+.... ..+-|.+ ...-|
T Consensus 177 ~alD~~fnwk~~~a~rs~~-k-------sgv~~g~~F~~~~~~GtVyyvdq~-g~~~~V~k~dS~--vQmLf~~-~~eai 244 (1416)
T KOG3617|consen 177 SALDEPFNWKESLAERSDE-K-------SGVPKGTEFLFAGKSGTVYYVDQN-GRQRTVHKLDSE--VQMLFMG-YCEAI 244 (1416)
T ss_pred hhhcccccCccchhhcccc-c-------cCCCCCcEEEEEcCCceEEEEcCC-CcEEEEEEccch--HHHHHhc-ccceE
Confidence 4343 33322111111111 0 113577788888889988887743 444433332111 0111111 11111
Q ss_pred EEEeCCCcEEEEEcCC----------------CCc---------------eEEEeeccCCCEEEEEEcCCCCEEEEEECC
Q 005096 371 VSGSLDGSIFHWLVGH----------------ETP---------------QVEIHNVHDNTVWDLAWHPIGYLLCSGSND 419 (715)
Q Consensus 371 ~sgs~DG~I~iwd~~~----------------~~~---------------~~~~~~~h~~~V~~l~~spdg~~L~sgs~D 419 (715)
++...+-++.++-+.. +.. ..+.-......++|++++..+..|+.|...
T Consensus 245 ~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEssGvLr~~eKyg~e~ge~~~c~cY~~~~~~l~agt~~ 324 (1416)
T KOG3617|consen 245 SIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSESSGVLRKSEKYGLELGEGILCMCYGEKEIRLWAGTKE 324 (1416)
T ss_pred EEEeeeceeeEEEecCCCchHHhhhhhhccccCCccCccccccccccccCCcchhhhcCCceEEEEEeccceEEEecccC
Confidence 1111111111111100 000 001111134579999999999999999999
Q ss_pred CeEEEEecCC
Q 005096 420 HTTKFWCRNR 429 (715)
Q Consensus 420 g~I~iWdl~~ 429 (715)
|.+.+|....
T Consensus 325 gnv~~w~~v~ 334 (1416)
T KOG3617|consen 325 GNVTIWLDVN 334 (1416)
T ss_pred CcEEEeeecC
Confidence 9999997543
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.61 E-value=4.4e-05 Score=75.53 Aligned_cols=258 Identities=13% Similarity=0.039 Sum_probs=144.9
Q ss_pred CEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEE
Q 005096 157 RRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSF 236 (715)
Q Consensus 157 ~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~ 236 (715)
.+++.|+..+.+.-.|..+++...+-.. ...|.+-+.- -+++++.|...|.+++.+.++++....+.....--.....
T Consensus 24 T~v~igSHs~~~~avd~~sG~~~We~il-g~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~ 101 (354)
T KOG4649|consen 24 TLVVIGSHSGIVIAVDPQSGNLIWEAIL-GVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQC 101 (354)
T ss_pred eEEEEecCCceEEEecCCCCcEEeehhh-CceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEE
Confidence 4677888888888888888876654322 2333332222 4678999999999999999999776666443332222334
Q ss_pred ecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC--ceeEEeccCCCc
Q 005096 237 CRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSG--RELCSFHGHKNM 314 (715)
Q Consensus 237 spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~--~~~~~~~~~~~~ 314 (715)
..++..|..++.|++.+..|..+...+.+.+.......+-++.+-...|+++...|.|.--..+.. ..+.... ..+.
T Consensus 102 d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~~~~~~~w~~~-~~~P 180 (354)
T KOG4649|consen 102 DFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNPYSSTEFWAAT-RFGP 180 (354)
T ss_pred cCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEEEEccCCCCcceehhhh-cCCc
Confidence 568899999999999999999999898887765555555666663334444445565544444433 1121111 1122
Q ss_pred eEE--EEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCe-----------EEEEEccCCCCEEEEEeCCCcEEE
Q 005096 315 VLC--VKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDV-----------TALAWHPFHEEYFVSGSLDGSIFH 381 (715)
Q Consensus 315 I~s--l~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V-----------~~l~~sp~~~~~l~sgs~DG~I~i 381 (715)
|.+ ++ -+..+..++-||.+.-+| ..++.+..+.. .+.| ..|.+. +++-+++......-.+
T Consensus 181 iF~splc---v~~sv~i~~VdG~l~~f~-~sG~qvwr~~t-~GpIf~~Pc~s~Ps~q~i~~~--~~~Cf~~~~p~~ghL~ 253 (354)
T KOG4649|consen 181 IFASPLC---VGSSVIITTVDGVLTSFD-ESGRQVWRPAT-KGPIFMEPCESRPSCQQISLE--NENCFCAPLPIAGHLL 253 (354)
T ss_pred cccCcee---ccceEEEEEeccEEEEEc-CCCcEEEeecC-CCceecccccCCCcceEEEEe--cCCeEEEeccccceEE
Confidence 211 11 133455555666666666 45555554432 1111 112222 2222222222223345
Q ss_pred EEcCCCCceEEEeeccCCCEEEEEEcC----CCCEEEEEECCCeEEEEecC
Q 005096 382 WLVGHETPQVEIHNVHDNTVWDLAWHP----IGYLLCSGSNDHTTKFWCRN 428 (715)
Q Consensus 382 wd~~~~~~~~~~~~~h~~~V~~l~~sp----dg~~L~sgs~Dg~I~iWdl~ 428 (715)
|..+.+........ +-...+++. ..++|..++.||++.|....
T Consensus 254 w~~~~g~t~~vy~~----p~l~F~~h~~~~S~~~ll~~~s~dgkv~il~~~ 300 (354)
T KOG4649|consen 254 WATQSGTTLHVYLS----PKLRFDLHSPGISYPKLLRRSSGDGKVMILMTS 300 (354)
T ss_pred EEecCCcEEEEEeC----cccceeccCCCCcchhhhhhhcCCCcEEEEEec
Confidence 66655422211111 111222222 14678888999999888554
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.2e-07 Score=96.40 Aligned_cols=158 Identities=15% Similarity=0.184 Sum_probs=119.3
Q ss_pred EEEcCCCC-EEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCC-----eeEEE
Q 005096 192 MVWSHNDN-WMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARC-----QEERS 265 (715)
Q Consensus 192 l~~spdg~-~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~-----~~~~~ 265 (715)
++|+-+-. +-++.+.+-.|.+-|++++.... + ..++.|.++.|.-.+++++.|+.+|.|.++|++.. .+...
T Consensus 217 CawSlni~gyhfs~G~sqqv~L~nvetg~~qs-f-~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~r 294 (425)
T KOG2695|consen 217 CAWSLNIMGYHFSVGLSQQVLLTNVETGHQQS-F-QSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQR 294 (425)
T ss_pred hhhhhccceeeecccccceeEEEEeecccccc-c-ccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEE
Confidence 36654321 22455566778888888774332 2 26778999999988999999999999999999654 33344
Q ss_pred ecccCCceEEEEEcC-CCCEEEEEeCCCcEEEEECCCCce---eEEeccCCCceEEEE--EcCCCCEEEEEECCCeEEEE
Q 005096 266 LTGHGWDVKSVDWHP-TKSLLVSGGKDSLVKLWDAKSGRE---LCSFHGHKNMVLCVK--WNQNGNWVLTASKDQIIKLY 339 (715)
Q Consensus 266 l~~~~~~I~si~~sp-dg~~L~sgs~Dg~I~iwDl~s~~~---~~~~~~~~~~I~sl~--~spdg~~Lasgs~dg~I~iw 339 (715)
+. |...|+++..-. ++.+|.+.+.+|+|++||++--++ +..+++|.+.-.-+- +.+....|++++.|...+||
T Consensus 295 ly-h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiW 373 (425)
T KOG2695|consen 295 LY-HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIW 373 (425)
T ss_pred EE-cCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEE
Confidence 43 888899887766 678999999999999999997666 888888765443333 34566788889999999999
Q ss_pred ECCCCeEEEEeec
Q 005096 340 DIRAMKELESFRG 352 (715)
Q Consensus 340 Dl~t~~~~~~~~~ 352 (715)
.++.+..+.++..
T Consensus 374 sl~~ghLl~tipf 386 (425)
T KOG2695|consen 374 SLDSGHLLCTIPF 386 (425)
T ss_pred ecccCceeeccCC
Confidence 9999999888764
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.60 E-value=2e-05 Score=85.66 Aligned_cols=234 Identities=14% Similarity=0.126 Sum_probs=141.9
Q ss_pred cCCCCEEEEE---------eCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEE
Q 005096 195 SHNDNWMVSG---------DDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERS 265 (715)
Q Consensus 195 spdg~~L~tg---------s~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~ 265 (715)
|+|+++++.. +..+.+.|||+++++....... ...+....|||+++.|+... ++.|+++++.++...+.
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~l 78 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQL 78 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEES
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEe
Confidence 4667766653 2246788999999776655433 67889999999999998886 56899999877644432
Q ss_pred eccc-----------------CCceEEEEEcCCCCEEEEEeCC-C-----------------------------------
Q 005096 266 LTGH-----------------GWDVKSVDWHPTKSLLVSGGKD-S----------------------------------- 292 (715)
Q Consensus 266 l~~~-----------------~~~I~si~~spdg~~L~sgs~D-g----------------------------------- 292 (715)
.... -+.-..+-|+||+++|+....| .
T Consensus 79 T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v 158 (353)
T PF00930_consen 79 TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRV 158 (353)
T ss_dssp ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EE
T ss_pred ccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCce
Confidence 2211 1223578899999988765432 1
Q ss_pred cEEEEECCCCceeEE--e---ccCCCceEEEEEcCCCCEEEEEECCC-----eEEEEECCCCeEEEEeec-CCC---CeE
Q 005096 293 LVKLWDAKSGRELCS--F---HGHKNMVLCVKWNQNGNWVLTASKDQ-----IIKLYDIRAMKELESFRG-HRK---DVT 358 (715)
Q Consensus 293 ~I~iwDl~s~~~~~~--~---~~~~~~I~sl~~spdg~~Lasgs~dg-----~I~iwDl~t~~~~~~~~~-h~~---~V~ 358 (715)
.|.|+|+++++.... . ......+..+.|.++++.|++.-.++ .|.++|..+++....+.. ... ...
T Consensus 159 ~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~ 238 (353)
T PF00930_consen 159 SLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYD 238 (353)
T ss_dssp EEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSS
T ss_pred EEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeec
Confidence 144456665543211 1 12345688899999988444433222 577788877655333321 222 233
Q ss_pred EEEEc-cCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEE-EEEcCCCCEEE-EEECC--CeEEEEecCCC
Q 005096 359 ALAWH-PFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWD-LAWHPIGYLLC-SGSND--HTTKFWCRNRP 430 (715)
Q Consensus 359 ~l~~s-p~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~-l~~spdg~~L~-sgs~D--g~I~iWdl~~~ 430 (715)
.+.+. +++..+|.....||.-.||-++......+.+....-.|+. +.|+.+++.|+ ++..+ +.-.||.++..
T Consensus 239 ~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~ 315 (353)
T PF00930_consen 239 PPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLD 315 (353)
T ss_dssp EEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETT
T ss_pred ccccccCCCCEEEEEEEcCCCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeC
Confidence 55554 6577778777888987777665555545555545556755 67788866555 44442 46677777665
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=98.59 E-value=2.6e-05 Score=83.06 Aligned_cols=276 Identities=13% Similarity=0.113 Sum_probs=139.3
Q ss_pred EEEEEcCCCCEEEEEeC-C--CeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeee
Q 005096 148 NRVLWTPTGRRLITGSQ-S--GEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANK 224 (715)
Q Consensus 148 ~~l~~spdg~~Latgs~-d--g~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~ 224 (715)
+.=+|..||++|+.++. | ..+++.|+++++.+....+.........++++++.|+-...+..|+-.|+++.+....+
T Consensus 39 ~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy 118 (386)
T PF14583_consen 39 YQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVY 118 (386)
T ss_dssp TS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEE
T ss_pred cCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEE
Confidence 34467889987776655 4 45778899998877665543232334667788888766656678888899998877777
Q ss_pred cCCCCCeEEEEEe--cCCCEEEEEEC----------------------CCcEEEEECCCCeeEEEecccCCceEEEEEcC
Q 005096 225 SAHKESVRDLSFC--RTDLKFCSCSD----------------------DTTVKVWDFARCQEERSLTGHGWDVKSVDWHP 280 (715)
Q Consensus 225 ~~h~~~I~~l~~s--pd~~~Las~s~----------------------Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~sp 280 (715)
......+-...|. .|+..++..-. ...|...|+.+++....+. ....+.-+-|+|
T Consensus 119 ~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~-~~~wlgH~~fsP 197 (386)
T PF14583_consen 119 EVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE-DTDWLGHVQFSP 197 (386)
T ss_dssp E--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE-ESS-EEEEEEET
T ss_pred ECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe-cCccccCcccCC
Confidence 6666666555554 34555543211 1236667888776655554 566788999999
Q ss_pred CCCEEEEEeCCC-----cEEEEECCC-CceeEEeccC--CCceEEEEEcCCCCEEEEEE-----CCCeEEEEECCCCeEE
Q 005096 281 TKSLLVSGGKDS-----LVKLWDAKS-GRELCSFHGH--KNMVLCVKWNQNGNWVLTAS-----KDQIIKLYDIRAMKEL 347 (715)
Q Consensus 281 dg~~L~sgs~Dg-----~I~iwDl~s-~~~~~~~~~~--~~~I~sl~~spdg~~Lasgs-----~dg~I~iwDl~t~~~~ 347 (715)
....+++-|..| .-|||-+++ +..++.+..+ ...+..=-|.+||+.|..-+ .+..|.-+|+.+++..
T Consensus 198 ~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~ 277 (386)
T PF14583_consen 198 TDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERR 277 (386)
T ss_dssp TEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EE
T ss_pred CCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCce
Confidence 766555544333 136675543 3334444322 23455567899998777533 2446778889887654
Q ss_pred EEeecCCCCeEEEEEccCCCCEEEEEeCCC----------------cEEEEEcCCCCceEEEeeccCC-----------C
Q 005096 348 ESFRGHRKDVTALAWHPFHEEYFVSGSLDG----------------SIFHWLVGHETPQVEIHNVHDN-----------T 400 (715)
Q Consensus 348 ~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG----------------~I~iwd~~~~~~~~~~~~~h~~-----------~ 400 (715)
..... .....+..++ ++++++.-+.|. .|+++++..+... .+..|.. .
T Consensus 278 ~~~~~--p~~~H~~ss~-Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~--~l~~h~~sw~v~~~~~q~~ 352 (386)
T PF14583_consen 278 RLMEM--PWCSHFMSSP-DGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFR--KLARHDTSWKVLDGDRQVT 352 (386)
T ss_dssp EEEEE---SEEEEEE-T-TSSEEEEEE-------------------EEEEEETTTTEEE--EEEE-------BTTBSSTT
T ss_pred EEEeC--CceeeeEEcC-CCCEEEecCCCCCccccccccceecCCcEEEEeccccCcee--eeeeccCcceeecCCCccC
Confidence 33222 2344555555 677776544432 4556666544322 1111211 1
Q ss_pred EEEEEEcCCCCEEEE-EECCCeEEEEecCC
Q 005096 401 VWDLAWHPIGYLLCS-GSNDHTTKFWCRNR 429 (715)
Q Consensus 401 V~~l~~spdg~~L~s-gs~Dg~I~iWdl~~ 429 (715)
=-...|+||++.|+. +..+|...||-++.
T Consensus 353 hPhp~FSPDgk~VlF~Sd~~G~~~vY~v~i 382 (386)
T PF14583_consen 353 HPHPSFSPDGKWVLFRSDMEGPPAVYLVEI 382 (386)
T ss_dssp ----EE-TTSSEEEEEE-TTSS-EEEEEE-
T ss_pred CCCCccCCCCCEEEEECCCCCCccEEEEeC
Confidence 135789999877655 55678888886643
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.2e-05 Score=90.26 Aligned_cols=222 Identities=10% Similarity=0.047 Sum_probs=138.9
Q ss_pred CCCEEEEEeC-CCeEEEEeCCCCceEEEEeccC-CCEEEEEE-------------------cCCCCEEE-EEeCCCcEEE
Q 005096 155 TGRRLITGSQ-SGEFTLWNGQSFNFEMILQAHD-HAIRSMVW-------------------SHNDNWMV-SGDDGGAIKY 212 (715)
Q Consensus 155 dg~~Latgs~-dg~I~Iwd~~~~~~~~~l~~h~-~~V~~l~~-------------------spdg~~L~-tgs~dg~I~i 212 (715)
||++|+.-.. +..|-..+++..++.+++..-+ ..+..++| .+||+.+. +.-..+.+.+
T Consensus 140 dGr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vSv 219 (635)
T PRK02888 140 DGRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFTA 219 (635)
T ss_pred ceeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEEEE
Confidence 7888888875 5667777777776665554321 22333333 33554442 2223356677
Q ss_pred EeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECC----CcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEE
Q 005096 213 WQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDD----TTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSG 288 (715)
Q Consensus 213 wd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~D----g~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sg 288 (715)
+|.++.+....+... .....++++++++++++.+.+ .++...+..+...+..+.... + .++..+|++..+
T Consensus 220 ID~etmeV~~qV~Vd-gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~--i--ea~vkdGK~~~V- 293 (635)
T PRK02888 220 VDAETMEVAWQVMVD-GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIAR--I--EEAVKAGKFKTI- 293 (635)
T ss_pred EECccceEEEEEEeC-CCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHH--H--HHhhhCCCEEEE-
Confidence 777776665555432 345677888999998887632 234444433322222222110 1 133457876665
Q ss_pred eCCCcEEEEECCC----C-ceeEEeccCCCceEEEEEcCCCCEEEEEE-CCCeEEEEECCCCeE------------EEEe
Q 005096 289 GKDSLVKLWDAKS----G-RELCSFHGHKNMVLCVKWNQNGNWVLTAS-KDQIIKLYDIRAMKE------------LESF 350 (715)
Q Consensus 289 s~Dg~I~iwDl~s----~-~~~~~~~~~~~~I~sl~~spdg~~Lasgs-~dg~I~iwDl~t~~~------------~~~~ 350 (715)
.++.|.++|.++ + +.+..+. -......+.++|||+++++++ .+.+|.|+|+.+.+. +.+.
T Consensus 294 -~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaev 371 (635)
T PRK02888 294 -GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEP 371 (635)
T ss_pred -CCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEee
Confidence 367899999998 3 3344343 456688999999999988766 588999999988653 2333
Q ss_pred ecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCC
Q 005096 351 RGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGH 386 (715)
Q Consensus 351 ~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~ 386 (715)
.. ...-...+|.. +++.+.+...|..|..|++..
T Consensus 372 ev-GlGPLHTaFDg-~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 372 EL-GLGPLHTAFDG-RGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred cc-CCCcceEEECC-CCCEEEeEeecceeEEEehHH
Confidence 32 23345667877 567888888999999999875
|
|
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.54 E-value=4.3e-08 Score=106.77 Aligned_cols=239 Identities=15% Similarity=0.184 Sum_probs=154.8
Q ss_pred CCEEEEEEcCCC--CEEEEEeCCCcEEEEeCCCCc--eeeeecCCCCCeEEEEEec-CCCEEEEEE----CCCcEEEEEC
Q 005096 187 HAIRSMVWSHND--NWMVSGDDGGAIKYWQNNMNN--VKANKSAHKESVRDLSFCR-TDLKFCSCS----DDTTVKVWDF 257 (715)
Q Consensus 187 ~~V~~l~~spdg--~~L~tgs~dg~I~iwd~~~~~--~~~~~~~h~~~I~~l~~sp-d~~~Las~s----~Dg~V~iwdl 257 (715)
..+.|+++..+. .++++|..+|.|.+-.+.... .......+...+++++|++ |.+.||+|- .|..+.|||+
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi 136 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI 136 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence 456777776554 366889999999988765432 2334456778899999987 445666663 3678999999
Q ss_pred CCC----eeEEEecc-cCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC-ceeEEeccCCCceEEEEEcC-CCCEEEEE
Q 005096 258 ARC----QEERSLTG-HGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSG-RELCSFHGHKNMVLCVKWNQ-NGNWVLTA 330 (715)
Q Consensus 258 ~~~----~~~~~l~~-~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~-~~~~~~~~~~~~I~sl~~sp-dg~~Lasg 330 (715)
.+. +....+.+ ......+++|..+.++|++|.....|.++|++.. .....+ .+..+..+.++| ..+|+++-
T Consensus 137 ~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv--nTk~vqG~tVdp~~~nY~cs~ 214 (783)
T KOG1008|consen 137 NSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV--NTKYVQGITVDPFSPNYFCSN 214 (783)
T ss_pred ccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh--hhhhcccceecCCCCCceecc
Confidence 765 12222222 4556779999999999999999999999999832 222222 344567788888 77777766
Q ss_pred ECCCeEEEEE-CCCCeEEEEeecCC-----CCeEEEEEccCCCCEEEEEeCC-CcEEEEEcCCCCc-------eEEEe--
Q 005096 331 SKDQIIKLYD-IRAMKELESFRGHR-----KDVTALAWHPFHEEYFVSGSLD-GSIFHWLVGHETP-------QVEIH-- 394 (715)
Q Consensus 331 s~dg~I~iwD-l~t~~~~~~~~~h~-----~~V~~l~~sp~~~~~l~sgs~D-G~I~iwd~~~~~~-------~~~~~-- 394 (715)
. ||.|.+|| .++.+.......+. ..+..++|+|....++++.+.| ++|+++|+..... .....
T Consensus 215 ~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~v~t~~s~nn~~~~~~~s 293 (783)
T KOG1008|consen 215 S-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICVVGTEGSANNSVFVNYES 293 (783)
T ss_pred c-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccccCCcccccccceeeecc
Confidence 5 99999999 44444322222222 2489999999877788877765 5799998753211 01110
Q ss_pred ---eccC---CCEEEEEEcCCC--CEEEEEECCCeEEEEecC
Q 005096 395 ---NVHD---NTVWDLAWHPIG--YLLCSGSNDHTTKFWCRN 428 (715)
Q Consensus 395 ---~~h~---~~V~~l~~spdg--~~L~sgs~Dg~I~iWdl~ 428 (715)
..+. +.|.++.|+... ...+++-.+-.+.-+++.
T Consensus 294 ~~~~q~~~~~s~I~~f~wH~~s~~er~il~~~nl~~~Df~V~ 335 (783)
T KOG1008|consen 294 KYPVQPNSQCSGIDFFTWHTASPTERQILGVINLQPKDFSVH 335 (783)
T ss_pred cccccccccccceeecCcCcCCccceeEEeeccCChhhccch
Confidence 1122 467777887654 334444444455555543
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.54 E-value=2.6e-05 Score=86.28 Aligned_cols=226 Identities=16% Similarity=0.198 Sum_probs=124.3
Q ss_pred EEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCC
Q 005096 181 ILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARC 260 (715)
Q Consensus 181 ~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~ 260 (715)
.+...+.....+.++|++++++++ .||...|+......... .+....++|.. .+.+|+-..+++|.|+.--+.
T Consensus 27 ~lg~~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~k~-----~G~g~~~vw~~-~n~yAv~~~~~~I~I~kn~~~ 99 (443)
T PF04053_consen 27 ELGSCEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRNKA-----FGSGLSFVWSS-RNRYAVLESSSTIKIYKNFKN 99 (443)
T ss_dssp EEEE-SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTTEEEE-----EEE-SEEEE-T-SSEEEEE-TTS-EEEEETTEE
T ss_pred cCCCCCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCCcccc-----cCceeEEEEec-CccEEEEECCCeEEEEEcCcc
Confidence 334445567899999999999885 46777787743333222 23445678887 455777777889999743222
Q ss_pred eeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEE
Q 005096 261 QEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYD 340 (715)
Q Consensus 261 ~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwD 340 (715)
+....+.. ...+..|.. |.+|+..+.+ .|.+||+.+++.++++... .|..+.|++++++++..+.+ .+.|++
T Consensus 100 ~~~k~i~~-~~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~-~i~il~ 171 (443)
T PF04053_consen 100 EVVKSIKL-PFSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKD-SIYILK 171 (443)
T ss_dssp -TT------SS-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S--SEEEEE
T ss_pred ccceEEcC-CcccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCC-eEEEEE
Confidence 22223332 123444443 7777777654 8999999999999998743 38999999999999998855 677776
Q ss_pred CCCC-----------eEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCC
Q 005096 341 IRAM-----------KELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPI 409 (715)
Q Consensus 341 l~t~-----------~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd 409 (715)
.... ..+..+......|.+.+|.. + .|+-.+.. .|+.+ +.... .++..-+..+.-+.+.+.
T Consensus 172 ~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~--d-~fiYtT~~-~lkYl-~~Ge~---~~i~~ld~~~yllgy~~~ 243 (443)
T PF04053_consen 172 YNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVE--D-CFIYTTSN-HLKYL-VNGET---GIIAHLDKPLYLLGYLPK 243 (443)
T ss_dssp E-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEET--T-EEEEE-TT-EEEEE-ETTEE---EEEEE-SS--EEEEEETT
T ss_pred ecchhcccccccCchhceEEEEEecceeEEEEEEc--C-EEEEEcCC-eEEEE-EcCCc---ceEEEcCCceEEEEEEcc
Confidence 5422 03334433367888999974 2 55544444 77663 22222 222222457777888887
Q ss_pred CCEEEEEECCCeEEEEecCC
Q 005096 410 GYLLCSGSNDHTTKFWCRNR 429 (715)
Q Consensus 410 g~~L~sgs~Dg~I~iWdl~~ 429 (715)
...|+....|+.|..+.++.
T Consensus 244 ~~~ly~~Dr~~~v~~~~ld~ 263 (443)
T PF04053_consen 244 ENRLYLIDRDGNVISYELDL 263 (443)
T ss_dssp TTEEEEE-TT--EEEEE--H
T ss_pred CCEEEEEECCCCEEEEEECH
Confidence 78888889999999988753
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.53 E-value=5.5e-08 Score=105.95 Aligned_cols=257 Identities=16% Similarity=0.247 Sum_probs=156.8
Q ss_pred CCccEEEEEEcCCC--CEEEEEeCCCeEEEEeCCCCce--EEEEeccCCCEEEEEEcCC-CCEEEEEe----CCCcEEEE
Q 005096 143 NRCSINRVLWTPTG--RRLITGSQSGEFTLWNGQSFNF--EMILQAHDHAIRSMVWSHN-DNWMVSGD----DGGAIKYW 213 (715)
Q Consensus 143 H~~~I~~l~~spdg--~~Latgs~dg~I~Iwd~~~~~~--~~~l~~h~~~V~~l~~spd-g~~L~tgs----~dg~I~iw 213 (715)
....+.|+++.-+. ..+++|..+|.|.+-.+..... ......+....++++|++- .+.||+|- .|..+.||
T Consensus 55 dtqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iw 134 (783)
T KOG1008|consen 55 DTQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIW 134 (783)
T ss_pred cCCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccce
Confidence 44567788877654 4688999999999987664322 2334567788999999874 46677663 45779999
Q ss_pred eCCCC----ceeeeecC-CCCCeEEEEEecCCCEEEEEECCCcEEEEECCCC-eeEEEecccCCceEEEEEcC-CCCEEE
Q 005096 214 QNNMN----NVKANKSA-HKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARC-QEERSLTGHGWDVKSVDWHP-TKSLLV 286 (715)
Q Consensus 214 d~~~~----~~~~~~~~-h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~-~~~~~l~~~~~~I~si~~sp-dg~~L~ 286 (715)
|+++. .....+.. ......+++|..+.+.+.+|.....|.++|++.. .....+ ....+..+.++| ..++++
T Consensus 135 di~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv--nTk~vqG~tVdp~~~nY~c 212 (783)
T KOG1008|consen 135 DINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV--NTKYVQGITVDPFSPNYFC 212 (783)
T ss_pred ecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh--hhhhcccceecCCCCCcee
Confidence 98876 11112222 4456678999988899999999999999999732 222222 233566777888 667776
Q ss_pred EEeCCCcEEEEE-CCCCc-eeEEeccCC----CceEEEEEcCCC-CEEEEEE-CCCeEEEEECCCCe--------EE---
Q 005096 287 SGGKDSLVKLWD-AKSGR-ELCSFHGHK----NMVLCVKWNQNG-NWVLTAS-KDQIIKLYDIRAMK--------EL--- 347 (715)
Q Consensus 287 sgs~Dg~I~iwD-l~s~~-~~~~~~~~~----~~I~sl~~spdg-~~Lasgs-~dg~I~iwDl~t~~--------~~--- 347 (715)
+-. |+.|.+|| .++-+ .+..+...+ ..+..++|+|.. ..+++.. ..++|+++|+..-. ..
T Consensus 213 s~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~v~t~~s~nn~~~~~~ 291 (783)
T KOG1008|consen 213 SNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICVVGTEGSANNSVFVNY 291 (783)
T ss_pred ccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccccCCcccccccceeee
Confidence 655 89999999 33322 222222222 348999999943 2444444 45789999985311 11
Q ss_pred EE---eecCC--CCeEEEEEccCC-CCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEc
Q 005096 348 ES---FRGHR--KDVTALAWHPFH-EEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWH 407 (715)
Q Consensus 348 ~~---~~~h~--~~V~~l~~sp~~-~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s 407 (715)
.. ++... +.|.+..|++.. -+..+++-.+-.+.-+++.. .+...+.++.+.+-|+
T Consensus 292 ~s~~~~q~~~~~s~I~~f~wH~~s~~er~il~~~nl~~~Df~V~e-----~~~pa~s~p~n~L~~s 352 (783)
T KOG1008|consen 292 ESKYPVQPNSQCSGIDFFTWHTASPTERQILGVINLQPKDFSVHE-----EVIPASSNPYNDLIFS 352 (783)
T ss_pred cccccccccccccceeecCcCcCCccceeEEeeccCChhhccchh-----heecccCCCcccchhh
Confidence 11 22222 567788887744 33344444444444444422 2222333355555554
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=98.53 E-value=2.4e-05 Score=87.91 Aligned_cols=263 Identities=11% Similarity=0.048 Sum_probs=155.8
Q ss_pred EEEEeCCCeEEEEeCCCCceEEEEeccC----------------------------CCEEEEEEc-----CCCCEEEEEe
Q 005096 159 LITGSQSGEFTLWNGQSFNFEMILQAHD----------------------------HAIRSMVWS-----HNDNWMVSGD 205 (715)
Q Consensus 159 Latgs~dg~I~Iwd~~~~~~~~~l~~h~----------------------------~~V~~l~~s-----pdg~~L~tgs 205 (715)
+.+|+..|.|+|+-+-+.+.++.+...+ +......+| .||+||++-+
T Consensus 69 f~SgG~sG~~~v~G~PSmr~l~~ipvf~~~~~~G~G~~~esk~~l~~~~~~~~~~~gD~HHp~~s~t~g~ydGr~~find 148 (635)
T PRK02888 69 FWSGGHSGEVRILGLPSMRELMRIPVFNRDSATGWGITNESKKVLGEGARGGKYLNGDTHHPHMSFTDGTYDGRYLFIND 148 (635)
T ss_pred EeeCCccceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHhhccccCCcccCCCcCCCcccccCCccceeEEEEec
Confidence 5577778888888877777666542110 011111111 2677888766
Q ss_pred C-CCcEEEEeCCCCceeeeecC-CCCCeEEEEE-------------------ecCCCEEEEE-ECCCcEEEEECCCCeeE
Q 005096 206 D-GGAIKYWQNNMNNVKANKSA-HKESVRDLSF-------------------CRTDLKFCSC-SDDTTVKVWDFARCQEE 263 (715)
Q Consensus 206 ~-dg~I~iwd~~~~~~~~~~~~-h~~~I~~l~~-------------------spd~~~Las~-s~Dg~V~iwdl~~~~~~ 263 (715)
. +..|...+++..++...+.. ....+..+++ .+|++.+... -..+.+.++|.++.+..
T Consensus 149 k~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vSvID~etmeV~ 228 (635)
T PRK02888 149 KANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFTAVDAETMEVA 228 (635)
T ss_pred CCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEEEEEECccceEE
Confidence 4 56676677666544333321 1112222222 3344433222 22456777787776666
Q ss_pred EEecccCCceEEEEEcCCCCEEEEEeCCC----cEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEE
Q 005096 264 RSLTGHGWDVKSVDWHPTKSLLVSGGKDS----LVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLY 339 (715)
Q Consensus 264 ~~l~~~~~~I~si~~spdg~~L~sgs~Dg----~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iw 339 (715)
..+... .....++++++++++++.+.+. ++...+..+...+..+.... + .++..+|++..+ .++.|.++
T Consensus 229 ~qV~Vd-gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~--i--ea~vkdGK~~~V--~gn~V~VI 301 (635)
T PRK02888 229 WQVMVD-GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIAR--I--EEAVKAGKFKTI--GGSKVPVV 301 (635)
T ss_pred EEEEeC-CCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHH--H--HHhhhCCCEEEE--CCCEEEEE
Confidence 655432 3456788899999988886432 23333333222222222110 1 133457887776 36789999
Q ss_pred ECCC----CeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCce-----------EEEeeccCCCEEEE
Q 005096 340 DIRA----MKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQ-----------VEIHNVHDNTVWDL 404 (715)
Q Consensus 340 Dl~t----~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~-----------~~~~~~h~~~V~~l 404 (715)
|.++ +..+..+..-......+.++|++..+++++..+.+|.|+|+.+.+.. ...... ...-...
T Consensus 302 D~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev-GlGPLHT 380 (635)
T PRK02888 302 DGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL-GLGPLHT 380 (635)
T ss_pred ECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc-CCCcceE
Confidence 9998 44444444467778899999955555666667899999999875531 111111 2234567
Q ss_pred EEcCCCCEEEEEECCCeEEEEecCC
Q 005096 405 AWHPIGYLLCSGSNDHTTKFWCRNR 429 (715)
Q Consensus 405 ~~spdg~~L~sgs~Dg~I~iWdl~~ 429 (715)
+|..+|....|...|..|..|++++
T Consensus 381 aFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 381 AFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred EECCCCCEEEeEeecceeEEEehHH
Confidence 8999999999999999999999875
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.50 E-value=0.00028 Score=73.95 Aligned_cols=258 Identities=10% Similarity=0.031 Sum_probs=159.0
Q ss_pred CeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEe----------CCCcEEEEeCCCCceeeeecCCC-------
Q 005096 166 GEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGD----------DGGAIKYWQNNMNNVKANKSAHK------- 228 (715)
Q Consensus 166 g~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs----------~dg~I~iwd~~~~~~~~~~~~h~------- 228 (715)
+.|+|+|.++++.+-.+.. +-.-.+.+++|++.+++++ +.-.|.+||..+......+..-.
T Consensus 17 ~rv~viD~d~~k~lGmi~~--g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~ 94 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDT--GFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV 94 (342)
T ss_dssp EEEEEEETTTTEEEEEEEE--ESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS
T ss_pred ceEEEEECCCCcEEEEeec--ccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec
Confidence 4799999999988777654 2233467899999887643 34569999999876655443221
Q ss_pred CCeEEEEEecCCCEEEEEEC--CCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECC-CCcee
Q 005096 229 ESVRDLSFCRTDLKFCSCSD--DTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAK-SGREL 305 (715)
Q Consensus 229 ~~I~~l~~spd~~~Las~s~--Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~-s~~~~ 305 (715)
.....+.++.|++++++... ...|.|.|+...+.+..+..-. ...-.-+. .+.|.+-|.||.+....+. .|+..
T Consensus 95 ~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG-C~~iyP~~--~~~F~~lC~DGsl~~v~Ld~~Gk~~ 171 (342)
T PF06433_consen 95 PYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG-CWLIYPSG--NRGFSMLCGDGSLLTVTLDADGKEA 171 (342)
T ss_dssp --GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS-EEEEEEEE--TTEEEEEETTSCEEEEEETSTSSEE
T ss_pred ccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCC-EEEEEecC--CCceEEEecCCceEEEEECCCCCEe
Confidence 12344678888988877644 4579999999988887776332 22112222 2468888899999998887 45554
Q ss_pred EEe----ccCCCc-eEEEEEcCCCCEEEEEECCCeEEEEECCCCeE--EEEeecCC----------CCeEEEEEccCCCC
Q 005096 306 CSF----HGHKNM-VLCVKWNQNGNWVLTASKDQIIKLYDIRAMKE--LESFRGHR----------KDVTALAWHPFHEE 368 (715)
Q Consensus 306 ~~~----~~~~~~-I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~--~~~~~~h~----------~~V~~l~~sp~~~~ 368 (715)
.+. ...+.. +..-+++.++..++..+.+|.|+-.|+..... ...+.... +.-.-+++++..++
T Consensus 172 ~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~r 251 (342)
T PF06433_consen 172 QKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGR 251 (342)
T ss_dssp EEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTE
T ss_pred EeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCe
Confidence 322 111222 22344555666677788899999999875542 22222110 12334667664444
Q ss_pred EEEEEe-------CCC--cEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCC-EEEEEE-CCCeEEEEecCCC
Q 005096 369 YFVSGS-------LDG--SIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGY-LLCSGS-NDHTTKFWCRNRP 430 (715)
Q Consensus 369 ~l~sgs-------~DG--~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~-~L~sgs-~Dg~I~iWdl~~~ 430 (715)
+++.-. .|+ .|.+||+.+.+.+.++... ..+.+|.++.|.+ +|++.+ .++.|.+||..+.
T Consensus 252 lyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~--~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tG 322 (342)
T PF06433_consen 252 LYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLE--HPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATG 322 (342)
T ss_dssp EEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEE--EEESEEEEESSSS-EEEEEETTTTEEEEEETTT-
T ss_pred EEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCC--CccceEEEccCCCcEEEEEcCCCCeEEEEeCcCC
Confidence 443321 122 4777788888877776653 3688999999865 666554 5799999999753
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.50 E-value=2.2e-05 Score=86.92 Aligned_cols=222 Identities=17% Similarity=0.206 Sum_probs=121.5
Q ss_pred CCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcee
Q 005096 142 KNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVK 221 (715)
Q Consensus 142 ~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~ 221 (715)
........+.++|+|+++++ +.||...|+.....+.... +.-..++|.. .+.+|+-..++.|.|+.--+.+..
T Consensus 30 ~~~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k~~-----G~g~~~vw~~-~n~yAv~~~~~~I~I~kn~~~~~~ 102 (443)
T PF04053_consen 30 SCEIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNKAF-----GSGLSFVWSS-RNRYAVLESSSTIKIYKNFKNEVV 102 (443)
T ss_dssp E-SS--SEEEE-TTSSEEEE-EETTEEEEEETTTTEEEEE-----EE-SEEEE-T-SSEEEEE-TTS-EEEEETTEE-TT
T ss_pred CCCcCCeeEEECCCCCEEEE-EcCCEEEEEEccCCccccc-----CceeEEEEec-CccEEEEECCCeEEEEEcCccccc
Confidence 34445789999999999888 6677888888554444332 2334678887 455777777889999743332221
Q ss_pred eeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 005096 222 ANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKS 301 (715)
Q Consensus 222 ~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s 301 (715)
..+.. ...+..|.. |..|+..+.+ .|.+||+++++.++.+... .|..|.|++++++++..+.+ .+.|++.+.
T Consensus 103 k~i~~-~~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~-~i~il~~~~ 174 (443)
T PF04053_consen 103 KSIKL-PFSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKD-SIYILKYNL 174 (443)
T ss_dssp ------SS-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S--SEEEEEE-H
T ss_pred eEEcC-CcccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCC-eEEEEEecc
Confidence 22221 123444433 7777766655 8999999999999998743 38999999999999998865 577776543
Q ss_pred C-----------ceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEE
Q 005096 302 G-----------RELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYF 370 (715)
Q Consensus 302 ~-----------~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l 370 (715)
. ..+..+......|.+.+|..| .++..+.. .|+. +..|+ ...+..-+..+.-+.+.+ ..+.+
T Consensus 175 ~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge-~~~i~~ld~~~yllgy~~-~~~~l 247 (443)
T PF04053_consen 175 EAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-HLKY--LVNGE-TGIIAHLDKPLYLLGYLP-KENRL 247 (443)
T ss_dssp HHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-EEEE--EETTE-EEEEEE-SS--EEEEEET-TTTEE
T ss_pred hhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-eEEE--EEcCC-cceEEEcCCceEEEEEEc-cCCEE
Confidence 2 133444433567889999865 55555545 6666 33333 223333345566666665 45677
Q ss_pred EEEeCCCcEEEEEcC
Q 005096 371 VSGSLDGSIFHWLVG 385 (715)
Q Consensus 371 ~sgs~DG~I~iwd~~ 385 (715)
.....|+.|..+.++
T Consensus 248 y~~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 248 YLIDRDGNVISYELD 262 (443)
T ss_dssp EEE-TT--EEEEE--
T ss_pred EEEECCCCEEEEEEC
Confidence 777777777777664
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=98.45 E-value=0.00017 Score=82.24 Aligned_cols=189 Identities=10% Similarity=0.051 Sum_probs=120.1
Q ss_pred CCEEEEEeCCCeEEEEeCCCCceEEEEeccC-CCEE---E-------EEEcCCCCEEEEEeCCCcEEEEeCCCCceeeee
Q 005096 156 GRRLITGSQSGEFTLWNGQSFNFEMILQAHD-HAIR---S-------MVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANK 224 (715)
Q Consensus 156 g~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~-~~V~---~-------l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~ 224 (715)
+.+|++++.++.|+-+|.++++.+-.+.... ..+. + +++ .+..|++++.|+.|.-+|.++++++...
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~~ 146 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWSK 146 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEeec
Confidence 4577778888889999999998877665321 1111 1 122 2356777888999999999999887665
Q ss_pred cCCCC----CeEEEEEecCCCEEEEEEC------CCcEEEEECCCCeeEEEecccCC-----------------------
Q 005096 225 SAHKE----SVRDLSFCRTDLKFCSCSD------DTTVKVWDFARCQEERSLTGHGW----------------------- 271 (715)
Q Consensus 225 ~~h~~----~I~~l~~spd~~~Las~s~------Dg~V~iwdl~~~~~~~~l~~~~~----------------------- 271 (715)
..... .+.+--..-++ .|++++. +|.|..+|.++++.+-.+.....
T Consensus 147 ~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~ 225 (527)
T TIGR03075 147 KNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPG 225 (527)
T ss_pred ccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCC
Confidence 43211 12111111134 4444432 68899999999888765432110
Q ss_pred --------ceE-EEEEcCCCCEEEEEeCC-----C-----------cEEEEECCCCceeEEeccCCCce---------EE
Q 005096 272 --------DVK-SVDWHPTKSLLVSGGKD-----S-----------LVKLWDAKSGRELCSFHGHKNMV---------LC 317 (715)
Q Consensus 272 --------~I~-si~~spdg~~L~sgs~D-----g-----------~I~iwDl~s~~~~~~~~~~~~~I---------~s 317 (715)
.+. .++++++.++|+.+..+ + .|.-.|+++|+....+......+ .-
T Consensus 226 ~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l 305 (527)
T TIGR03075 226 DAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMIL 305 (527)
T ss_pred CccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEE
Confidence 111 34677767777766522 2 57777999999887775422221 12
Q ss_pred EEEcCCCC---EEEEEECCCeEEEEECCCCeEE
Q 005096 318 VKWNQNGN---WVLTASKDQIIKLYDIRAMKEL 347 (715)
Q Consensus 318 l~~spdg~---~Lasgs~dg~I~iwDl~t~~~~ 347 (715)
+.+..+|+ .|+.+..+|.+.++|.++++.+
T Consensus 306 ~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 306 FDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred EEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 23334665 7889999999999999999886
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=98.44 E-value=0.00026 Score=77.96 Aligned_cols=120 Identities=18% Similarity=0.243 Sum_probs=84.4
Q ss_pred CceEEEEEcCC-CCEEEEE----eCCCc----EEEEECCCCcee----EEeccCCCceEEEEEcCCCCEEEEEECCCeEE
Q 005096 271 WDVKSVDWHPT-KSLLVSG----GKDSL----VKLWDAKSGREL----CSFHGHKNMVLCVKWNQNGNWVLTASKDQIIK 337 (715)
Q Consensus 271 ~~I~si~~spd-g~~L~sg----s~Dg~----I~iwDl~s~~~~----~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~ 337 (715)
....++.|+-. .+.+.+. +.+|. ..+|++..++.- .++ .....|.|++++++.+.|+.|+.||.|.
T Consensus 206 ~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsi-pL~s~v~~ca~sp~E~kLvlGC~DgSii 284 (545)
T PF11768_consen 206 NDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSI-PLPSQVICCARSPSEDKLVLGCEDGSII 284 (545)
T ss_pred CCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEE-ecCCcceEEecCcccceEEEEecCCeEE
Confidence 34456777653 3344443 23443 346676544321 122 3567899999999999999999999999
Q ss_pred EEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEe
Q 005096 338 LYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIH 394 (715)
Q Consensus 338 iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~ 394 (715)
+||...+... +....-..+.++|+| ++.+|++|+..|.|.+||+.-......+.
T Consensus 285 LyD~~~~~t~--~~ka~~~P~~iaWHp-~gai~~V~s~qGelQ~FD~ALspi~~qLl 338 (545)
T PF11768_consen 285 LYDTTRGVTL--LAKAEFIPTLIAWHP-DGAIFVVGSEQGELQCFDMALSPIKMQLL 338 (545)
T ss_pred EEEcCCCeee--eeeecccceEEEEcC-CCcEEEEEcCCceEEEEEeecCccceeec
Confidence 9998766433 333456688999999 89999999999999999997654444433
|
|
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=98.43 E-value=0.00055 Score=75.70 Aligned_cols=207 Identities=10% Similarity=0.116 Sum_probs=114.3
Q ss_pred EEEcCCCCEEEEEeCC----------C-eEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 005096 150 VLWTPTGRRLITGSQS----------G-EFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN 218 (715)
Q Consensus 150 l~~spdg~~Latgs~d----------g-~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~ 218 (715)
++.++.|..||....+ . .|.||+.. ++.+..+.-..+.|.++.|+.+.+ |++...||.+++||+...
T Consensus 34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~e~-LvvV~~dG~v~vy~~~G~ 111 (410)
T PF04841_consen 34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSS-GKLLSSIPWDSGRIVGMGWTDDEE-LVVVQSDGTVRVYDLFGE 111 (410)
T ss_pred EEEcCCCceEEEEecCcccccccCCCCcEEEEECCC-CCEeEEEEECCCCEEEEEECCCCe-EEEEEcCCEEEEEeCCCc
Confidence 3445555555554333 2 48999865 445555554458999999997654 555668999999998633
Q ss_pred c------eeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCe-eEEEecccCC---------ceE-EEEEcCC
Q 005096 219 N------VKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQ-EERSLTGHGW---------DVK-SVDWHPT 281 (715)
Q Consensus 219 ~------~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~-~~~~l~~~~~---------~I~-si~~spd 281 (715)
. ...........+....+..+| ++....++.|.+.+-.+.. ..+.+..... .+. ...++.+
T Consensus 112 ~~fsl~~~i~~~~v~e~~i~~~~~~~~G--ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~ 189 (410)
T PF04841_consen 112 FQFSLGEEIEEEKVLECRIFAIWFYKNG--IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSD 189 (410)
T ss_pred eeechhhhccccCcccccccccccCCCC--EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecC
Confidence 3 111111112222222333344 3333445555544322211 1111110000 000 0223444
Q ss_pred CCEEEEEeCCCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecC-CCCeEEE
Q 005096 282 KSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGH-RKDVTAL 360 (715)
Q Consensus 282 g~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h-~~~V~~l 360 (715)
....+....++.|.+.+-...+. +. ..+.+..+++|+++++||.-..+|.+.|.+.+-.+.+.++... ......+
T Consensus 190 ~~~~i~~~~g~~i~~i~~~~~~~---i~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~ 265 (410)
T PF04841_consen 190 RVVEILLANGETIYIIDENSFKQ---ID-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQM 265 (410)
T ss_pred cceEEEEecCCEEEEEEcccccc---cc-CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEE
Confidence 44444445555555444332111 21 2457999999999999999999999999987766666666644 4566777
Q ss_pred EEcc
Q 005096 361 AWHP 364 (715)
Q Consensus 361 ~~sp 364 (715)
.|+-
T Consensus 266 ~WCG 269 (410)
T PF04841_consen 266 AWCG 269 (410)
T ss_pred EEEC
Confidence 8863
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=98.42 E-value=0.00014 Score=82.93 Aligned_cols=236 Identities=8% Similarity=0.051 Sum_probs=145.7
Q ss_pred CCEEEEEeCCCeEEEEeCCCCceEEEEeccCC----CEEE-EEEcCCCCEEEEEe------CCCcEEEEeCCCCceeeee
Q 005096 156 GRRLITGSQSGEFTLWNGQSFNFEMILQAHDH----AIRS-MVWSHNDNWMVSGD------DGGAIKYWQNNMNNVKANK 224 (715)
Q Consensus 156 g~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~----~V~~-l~~spdg~~L~tgs------~dg~I~iwd~~~~~~~~~~ 224 (715)
+..|++++.|+.|.-.|.++++.+-....... .+++ -.+. ++ .|+++. .+|.|..+|.++++.+..+
T Consensus 120 ~~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~-~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~ 197 (527)
T TIGR03075 120 DGKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVV-KG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRR 197 (527)
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEE-CC-EEEEeecccccCCCcEEEEEECCCCceeEec
Confidence 34688888999999999999998876553211 1221 1111 33 455443 2688999999998876654
Q ss_pred cCCCC-------------------------------CeE-EEEEecCCCEEEEEECC-----C-----------cEEEEE
Q 005096 225 SAHKE-------------------------------SVR-DLSFCRTDLKFCSCSDD-----T-----------TVKVWD 256 (715)
Q Consensus 225 ~~h~~-------------------------------~I~-~l~~spd~~~Las~s~D-----g-----------~V~iwd 256 (715)
..... .+. .+++.++..+|+.+..+ + .|.-.|
T Consensus 198 ~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld 277 (527)
T TIGR03075 198 YTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARD 277 (527)
T ss_pred cCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEc
Confidence 32211 111 23555555666665522 2 577888
Q ss_pred CCCCeeEEEecccCCceEE---------EEEcCCCC---EEEEEeCCCcEEEEECCCCceeEEec--c----------CC
Q 005096 257 FARCQEERSLTGHGWDVKS---------VDWHPTKS---LLVSGGKDSLVKLWDAKSGRELCSFH--G----------HK 312 (715)
Q Consensus 257 l~~~~~~~~l~~~~~~I~s---------i~~spdg~---~L~sgs~Dg~I~iwDl~s~~~~~~~~--~----------~~ 312 (715)
+++++.+-.+......+.+ +.+..+|+ .|+.+.++|.+++.|-++++.+...+ . ..
T Consensus 278 ~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~~ 357 (527)
T TIGR03075 278 PDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATGVDLKT 357 (527)
T ss_pred cccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCcccccccCCCC
Confidence 9999888777643332222 22334565 78899999999999999998763210 0 00
Q ss_pred ------------------Cce-----------EEEEEcCCCCEEEEEECC------------------------------
Q 005096 313 ------------------NMV-----------LCVKWNQNGNWVLTASKD------------------------------ 333 (715)
Q Consensus 313 ------------------~~I-----------~sl~~spdg~~Lasgs~d------------------------------ 333 (715)
..+ ..++++++..++++...+
T Consensus 358 g~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~ 437 (527)
T TIGR03075 358 GRPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPPD 437 (527)
T ss_pred CCCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccCCCCC
Confidence 000 114566655555443322
Q ss_pred ---CeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEee
Q 005096 334 ---QIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHN 395 (715)
Q Consensus 334 ---g~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~ 395 (715)
|.|.-+|+.+++.+.+.........+.... .+.+++.++.||.++.+|.++++.+.+...
T Consensus 438 ~~~g~l~AiD~~tGk~~W~~~~~~p~~~~~l~t--~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~ 500 (527)
T TIGR03075 438 DHMGSLIAWDPITGKIVWEHKEDFPLWGGVLAT--AGDLVFYGTLEGYFKAFDAKTGEELWKFKT 500 (527)
T ss_pred CCceeEEEEeCCCCceeeEecCCCCCCCcceEE--CCcEEEEECCCCeEEEEECCCCCEeEEEeC
Confidence 457888999998888776433222222222 455777788899999999999998887755
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=98.41 E-value=5.8e-05 Score=82.53 Aligned_cols=207 Identities=14% Similarity=0.183 Sum_probs=123.9
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc--------------------------e-----------------EEEE
Q 005096 146 SINRVLWTPTGRRLITGSQSGEFTLWNGQSFN--------------------------F-----------------EMIL 182 (715)
Q Consensus 146 ~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~--------------------------~-----------------~~~l 182 (715)
.|+++.|+.+...|++|..+|.|.||.....+ + ...+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 58999999999999999999999998532110 0 1112
Q ss_pred eccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeec--------CCCCCeEEEEEec-----CC---CEEEEE
Q 005096 183 QAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKS--------AHKESVRDLSFCR-----TD---LKFCSC 246 (715)
Q Consensus 183 ~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~--------~h~~~I~~l~~sp-----d~---~~Las~ 246 (715)
....+.|++++.| |=.++++|..+|.+.|.|++...++.... .....|+++.|+- |+ -++++|
T Consensus 83 ~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG 161 (395)
T PF08596_consen 83 DAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG 161 (395)
T ss_dssp ---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred eccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence 3346789999997 66799999999999999998776655421 1334678888862 22 358889
Q ss_pred ECCCcEEEEECC--C-CeeE----EEecccCCceEEEE-EcCC-----------------C---CEEEEEeCCCcEEEEE
Q 005096 247 SDDTTVKVWDFA--R-CQEE----RSLTGHGWDVKSVD-WHPT-----------------K---SLLVSGGKDSLVKLWD 298 (715)
Q Consensus 247 s~Dg~V~iwdl~--~-~~~~----~~l~~~~~~I~si~-~spd-----------------g---~~L~sgs~Dg~I~iwD 298 (715)
+..|.+.+|.+. . +... .....+.+.|..|. ++.+ + +-+++...+..|+|+.
T Consensus 162 Tn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~ 241 (395)
T PF08596_consen 162 TNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFK 241 (395)
T ss_dssp ETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-
T ss_pred eCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEe
Confidence 999999999873 1 1111 11223445555554 3221 0 2234444567899999
Q ss_pred CCCCceeEEeccCCCceEEEEEc-----CCCCEEEEEECCCeEEEEECCCCeEEEEeecC
Q 005096 299 AKSGRELCSFHGHKNMVLCVKWN-----QNGNWVLTASKDQIIKLYDIRAMKELESFRGH 353 (715)
Q Consensus 299 l~s~~~~~~~~~~~~~I~sl~~s-----pdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h 353 (715)
.-+.+...+..........+++- ..+..|++-..+|.|++|.+-..+.+..+...
T Consensus 242 ~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~ 301 (395)
T PF08596_consen 242 PPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLP 301 (395)
T ss_dssp TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-S
T ss_pred CCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCC
Confidence 98887766655232233344442 35667888899999999999999998887754
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.40 E-value=3.4e-06 Score=94.42 Aligned_cols=259 Identities=15% Similarity=0.231 Sum_probs=148.7
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeee--
Q 005096 147 INRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANK-- 224 (715)
Q Consensus 147 I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~-- 224 (715)
+++++|+|..-.|+.|-.-|.+.+|+..+.+.......|...|..+.||++|+.|+++..-|.|.+|.......+...
T Consensus 62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~ 141 (1416)
T KOG3617|consen 62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSNI 141 (1416)
T ss_pred hhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccchh
Confidence 567999999989999999999999999988888888899999999999999999999999999999987632222111
Q ss_pred cCC--CCC--eEEEEEecCCC------EEEEEECCCcEE-EEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCc
Q 005096 225 SAH--KES--VRDLSFCRTDL------KFCSCSDDTTVK-VWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSL 293 (715)
Q Consensus 225 ~~h--~~~--I~~l~~spd~~------~Las~s~Dg~V~-iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~ 293 (715)
..| .+. ..|..++.++. ..++.+++..+- .++.+.....+... + .=.++|..++.++.+|+
T Consensus 142 ~~hel~~~ltl~cfRL~~~~Ee~~~laKaaVtgDe~alD~~fnwk~~~a~rs~~-k-------sgv~~g~~F~~~~~~Gt 213 (1416)
T KOG3617|consen 142 MQHELNDQLTLWCFRLSYDREEKFKLAKAAVTGDESALDEPFNWKESLAERSDE-K-------SGVPKGTEFLFAGKSGT 213 (1416)
T ss_pred hhhHhhceeeEEEEecCCChHHhhhhhhhhccCchhhhcccccCccchhhcccc-c-------cCCCCCcEEEEEcCCce
Confidence 111 122 23344444431 123334433332 33332111111111 1 11357788888899999
Q ss_pred EEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEEC----------------CCCeE-----------
Q 005096 294 VKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDI----------------RAMKE----------- 346 (715)
Q Consensus 294 I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl----------------~t~~~----------- 346 (715)
|+-.|-+ +++....+. .+.| .+-|.+...-|++...+-++.++-. +.|..
T Consensus 214 Vyyvdq~-g~~~~V~k~-dS~v-QmLf~~~~eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEssG 290 (1416)
T KOG3617|consen 214 VYYVDQN-GRQRTVHKL-DSEV-QMLFMGYCEAISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSESSG 290 (1416)
T ss_pred EEEEcCC-CcEEEEEEc-cchH-HHHHhcccceEEEEeeeceeeEEEecCCCchHHhhhhhhccccCCccCccccccccc
Confidence 8887744 444433321 1111 1112221111221111111111111 00000
Q ss_pred -E---EEee-cCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEc-CCC------CceEEEe--eccCCCEEEEEEcCCCCE
Q 005096 347 -L---ESFR-GHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLV-GHE------TPQVEIH--NVHDNTVWDLAWHPIGYL 412 (715)
Q Consensus 347 -~---~~~~-~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~-~~~------~~~~~~~--~~h~~~V~~l~~spdg~~ 412 (715)
+ ..+. .....++|++++. .+..|+.|...|.+.+|.- .++ ...+.+. ....+.|+.+.|.+-...
T Consensus 291 vLr~~eKyg~e~ge~~~c~cY~~-~~~~l~agt~~gnv~~w~~v~~~f~g~p~~d~w~l~~~~e~~g~I~~i~Wg~~k~~ 369 (1416)
T KOG3617|consen 291 VLRKSEKYGLELGEGILCMCYGE-KEIRLWAGTKEGNVTIWLDVNKGFQGDPTIDVWTLNGKRESLGKISLIRWGPIKST 369 (1416)
T ss_pred cccCCcchhhhcCCceEEEEEec-cceEEEecccCCcEEEeeecCccccCCCCcceEEecCchhhccceEEEEeccccch
Confidence 0 0010 1345689999998 7788899999999999943 321 1122221 123467999999886544
Q ss_pred EEEEE
Q 005096 413 LCSGS 417 (715)
Q Consensus 413 L~sgs 417 (715)
+++-+
T Consensus 370 ~avn~ 374 (1416)
T KOG3617|consen 370 AAVNT 374 (1416)
T ss_pred hhhhh
Confidence 44443
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.40 E-value=0.00027 Score=78.55 Aligned_cols=240 Identities=13% Similarity=0.111 Sum_probs=132.4
Q ss_pred cEEEEEEcCCCCEEEEE-eCCC----eEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCC-----------c
Q 005096 146 SINRVLWTPTGRRLITG-SQSG----EFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGG-----------A 209 (715)
Q Consensus 146 ~I~~l~~spdg~~Latg-s~dg----~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg-----------~ 209 (715)
.+..+++||||++||.+ +..| .|+|+|+++++.+....... ....+.|..|++.|+....+. .
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~-~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~ 203 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP-KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQ 203 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE-ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc-ccceEEEeCCCCEEEEEEeCcccccccCCCCcE
Confidence 44578899999999866 3333 59999999997765322111 112399999988876554332 3
Q ss_pred EEEEeCCCCce--eeeecCCCC-C-eEEEEEecCCCEEEEEEC---C-CcEEEEECCCC----eeEEEecccCCce-EEE
Q 005096 210 IKYWQNNMNNV--KANKSAHKE-S-VRDLSFCRTDLKFCSCSD---D-TTVKVWDFARC----QEERSLTGHGWDV-KSV 276 (715)
Q Consensus 210 I~iwd~~~~~~--~~~~~~h~~-~-I~~l~~spd~~~Las~s~---D-g~V~iwdl~~~----~~~~~l~~~~~~I-~si 276 (715)
|++|++.+... ...+..... . ...+..+.|+++|+..+. + ..|++.|+... .....+......+ ..+
T Consensus 204 v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v 283 (414)
T PF02897_consen 204 VYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYV 283 (414)
T ss_dssp EEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEE
T ss_pred EEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEE
Confidence 77888776532 233333332 2 678889999999776443 2 35788888764 2333333333333 344
Q ss_pred EEcCCCCEEEEEeC---CCcEEEEECCCCce---eEEeccCCC--ceEEEEEcCCCCEEEEE-ECCC--eEEEEECCCCe
Q 005096 277 DWHPTKSLLVSGGK---DSLVKLWDAKSGRE---LCSFHGHKN--MVLCVKWNQNGNWVLTA-SKDQ--IIKLYDIRAMK 345 (715)
Q Consensus 277 ~~spdg~~L~sgs~---Dg~I~iwDl~s~~~---~~~~~~~~~--~I~sl~~spdg~~Lasg-s~dg--~I~iwDl~t~~ 345 (715)
... .+.+++.... ++.|...++.+... ...+-.+.. .+..+.. .+++|+.. ..++ .|+++|+..+.
T Consensus 284 ~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~--~~~~Lvl~~~~~~~~~l~v~~~~~~~ 360 (414)
T PF02897_consen 284 DHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSL--FKDYLVLSYRENGSSRLRVYDLDDGK 360 (414)
T ss_dssp EEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEE--ETTEEEEEEEETTEEEEEEEETT-TE
T ss_pred Ecc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEE--ECCEEEEEEEECCccEEEEEECCCCc
Confidence 444 3334443322 35677778876652 223433444 3555554 34555544 3444 68899998344
Q ss_pred EEEEee-cCCCCeEEEEEccCCCCEEEEEeCC---CcEEEEEcCCCCc
Q 005096 346 ELESFR-GHRKDVTALAWHPFHEEYFVSGSLD---GSIFHWLVGHETP 389 (715)
Q Consensus 346 ~~~~~~-~h~~~V~~l~~sp~~~~~l~sgs~D---G~I~iwd~~~~~~ 389 (715)
....+. ...+.|..+........++++.+.- ++|+.||+.+++.
T Consensus 361 ~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~ 408 (414)
T PF02897_consen 361 ESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGEL 408 (414)
T ss_dssp EEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCE
T ss_pred EEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCE
Confidence 444443 3344466666555444454444432 4577777766654
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.34 E-value=5.3e-05 Score=83.65 Aligned_cols=176 Identities=16% Similarity=0.131 Sum_probs=112.6
Q ss_pred eEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEE---eCC-CcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCE
Q 005096 167 EFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSG---DDG-GAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLK 242 (715)
Q Consensus 167 ~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tg---s~d-g~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~ 242 (715)
.+.+-|.+ +.....+......+..-+|++++..++.. ... ..+.++++++++...... ....-..-+|++|+++
T Consensus 174 ~l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~ 251 (425)
T COG0823 174 ELALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSK 251 (425)
T ss_pred eEEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCE
Confidence 34444444 45555555556677788999999876543 222 458899999876555443 3444456789999988
Q ss_pred EEEEE-CCCc--EEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeC-CC--cEEEEECCCCceeEEeccCCCceE
Q 005096 243 FCSCS-DDTT--VKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGK-DS--LVKLWDAKSGRELCSFHGHKNMVL 316 (715)
Q Consensus 243 Las~s-~Dg~--V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~-Dg--~I~iwDl~s~~~~~~~~~~~~~I~ 316 (715)
|+.+. .|+. |+++|+...... .+....+.-+.=.|+|||+.|+..++ .| .|.++|++.+.. ..+......-.
T Consensus 252 l~f~~~rdg~~~iy~~dl~~~~~~-~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~ 329 (425)
T COG0823 252 LAFSSSRDGSPDIYLMDLDGKNLP-RLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNS 329 (425)
T ss_pred EEEEECCCCCccEEEEcCCCCcce-ecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCc
Confidence 77654 4554 667777766533 34444444447789999998877654 33 467777775544 33332333333
Q ss_pred EEEEcCCCCEEEEEECC-Ce--EEEEECCCCeE
Q 005096 317 CVKWNQNGNWVLTASKD-QI--IKLYDIRAMKE 346 (715)
Q Consensus 317 sl~~spdg~~Lasgs~d-g~--I~iwDl~t~~~ 346 (715)
+-.|++||++|+..+.+ |. |.+.|+.++..
T Consensus 330 ~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~ 362 (425)
T COG0823 330 NPVWSPDGDKIVFESSSGGQWDIDKNDLASGGK 362 (425)
T ss_pred CccCCCCCCEEEEEeccCCceeeEEeccCCCCc
Confidence 88899999999987743 43 66777766554
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.34 E-value=6.8e-05 Score=82.76 Aligned_cols=202 Identities=14% Similarity=0.172 Sum_probs=124.7
Q ss_pred EEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEE---CC-CcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEE
Q 005096 210 IKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCS---DD-TTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLL 285 (715)
Q Consensus 210 I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s---~D-g~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L 285 (715)
+.+-|.+ +.....+......+..-+|++++..++..+ .. ..++++|+++++....+. ..+.-..-+|+|||+.|
T Consensus 175 l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l 252 (425)
T COG0823 175 LALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKL 252 (425)
T ss_pred EEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEE
Confidence 3333433 444445555566677788999987765442 22 359999998887766655 34445578899999977
Q ss_pred EEE-eCCCc--EEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECC-C--eEEEEECCCCeEEEEeecCCCCeEE
Q 005096 286 VSG-GKDSL--VKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKD-Q--IIKLYDIRAMKELESFRGHRKDVTA 359 (715)
Q Consensus 286 ~sg-s~Dg~--I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~d-g--~I~iwDl~t~~~~~~~~~h~~~V~~ 359 (715)
+.+ ..|+. |+++|+.++. +..+....+.-+.-.|+|||++|+..+.. | .|.++|++.... ..+......-..
T Consensus 253 ~f~~~rdg~~~iy~~dl~~~~-~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~~ 330 (425)
T COG0823 253 AFSSSRDGSPDIYLMDLDGKN-LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNSN 330 (425)
T ss_pred EEEECCCCCccEEEEcCCCCc-ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCcC
Confidence 655 44554 6666888666 44455445555578899999999877643 3 577777765443 444433333337
Q ss_pred EEEccCCCCEEEEEeC-CCc--EEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEEC
Q 005096 360 LAWHPFHEEYFVSGSL-DGS--IFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSN 418 (715)
Q Consensus 360 l~~sp~~~~~l~sgs~-DG~--I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~ 418 (715)
-.|++ ++++|+..+. +|. |.+.|+.+... .+... .......-+|.++++.|+..+.
T Consensus 331 p~~Sp-dG~~i~~~~~~~g~~~i~~~~~~~~~~-~~~lt-~~~~~e~ps~~~ng~~i~~~s~ 389 (425)
T COG0823 331 PVWSP-DGDKIVFESSSGGQWDIDKNDLASGGK-IRILT-STYLNESPSWAPNGRMIMFSSG 389 (425)
T ss_pred ccCCC-CCCEEEEEeccCCceeeEEeccCCCCc-EEEcc-ccccCCCCCcCCCCceEEEecc
Confidence 88999 5666555543 454 66666655553 23322 2333445567777766665544
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.00089 Score=73.50 Aligned_cols=261 Identities=12% Similarity=0.079 Sum_probs=166.7
Q ss_pred EEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEE-
Q 005096 168 FTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGD-DGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCS- 245 (715)
Q Consensus 168 I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs-~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las- 245 (715)
+.+++..+.+....+..+. ....+.+.+++..+.+.. ....+.+.+................-..++++++++.++.
T Consensus 13 ~~v~~~~~~~~~~~~~~~~-~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~ 91 (381)
T COG3391 13 VSVINTGTNKVTAAISLGR-GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVT 91 (381)
T ss_pred eEEEeecccEEEEEeecCC-CCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEe
Confidence 5666655555554444333 455677777775554333 2234555554422222212211134457788888875544
Q ss_pred EECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeC---CCcEEEEECCCCceeEEeccCCCceEEEEEcC
Q 005096 246 CSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGK---DSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQ 322 (715)
Q Consensus 246 ~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~---Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~sp 322 (715)
...++.|.+.|..+.+......... .-..++++++++.++++.. ++.+.+.|..+.+.+.+....... ..+++++
T Consensus 92 ~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p 169 (381)
T COG3391 92 TGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDP 169 (381)
T ss_pred cCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECC
Confidence 4456899999987777666654332 6678999999987777665 688999999988887775433334 8899999
Q ss_pred CCCEEEEEE-CCCeEEEEECCCCeEEE-E---eecCCCCeEEEEEccCCCCEEEEEeCC--CcEEEEEcCCCCceEEEee
Q 005096 323 NGNWVLTAS-KDQIIKLYDIRAMKELE-S---FRGHRKDVTALAWHPFHEEYFVSGSLD--GSIFHWLVGHETPQVEIHN 395 (715)
Q Consensus 323 dg~~Lasgs-~dg~I~iwDl~t~~~~~-~---~~~h~~~V~~l~~sp~~~~~l~sgs~D--G~I~iwd~~~~~~~~~~~~ 395 (715)
+++.++++. .++.|.++|..+..... . ...-...-..+.+++++.+..++...+ +.+.+.|..+.........
T Consensus 170 ~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~ 249 (381)
T COG3391 170 DGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLP 249 (381)
T ss_pred CCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccc
Confidence 999777665 78899999977665553 1 112233456788888555455555444 5888888877655444222
Q ss_pred ccCCCEEEEEEcCCCCEEEEEECC-CeEEEEecCCCC
Q 005096 396 VHDNTVWDLAWHPIGYLLCSGSND-HTTKFWCRNRPG 431 (715)
Q Consensus 396 ~h~~~V~~l~~spdg~~L~sgs~D-g~I~iWdl~~~~ 431 (715)
........+.++++|..+.+.... +.+.+-|.....
T Consensus 250 ~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~ 286 (381)
T COG3391 250 VGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDR 286 (381)
T ss_pred cccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCc
Confidence 111145678899999988887544 778777765433
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.00048 Score=75.96 Aligned_cols=115 Identities=21% Similarity=0.194 Sum_probs=81.4
Q ss_pred CceEEEEEcC-CCCEEEEE----ECCCe----EEEEECCCCeE--EEEe-ecCCCCeEEEEEccCCCCEEEEEeCCCcEE
Q 005096 313 NMVLCVKWNQ-NGNWVLTA----SKDQI----IKLYDIRAMKE--LESF-RGHRKDVTALAWHPFHEEYFVSGSLDGSIF 380 (715)
Q Consensus 313 ~~I~sl~~sp-dg~~Lasg----s~dg~----I~iwDl~t~~~--~~~~-~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~ 380 (715)
....++.||- +.+.+.+. +.+|. ..+|++...+. +... ......|.++++++ +++.|+.|+.||.|.
T Consensus 206 ~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp-~E~kLvlGC~DgSii 284 (545)
T PF11768_consen 206 NDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSP-SEDKLVLGCEDGSII 284 (545)
T ss_pred CCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCc-ccceEEEEecCCeEE
Confidence 3446677776 34444443 23443 34566654332 2111 14677899999999 899999999999999
Q ss_pred EEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCCCC
Q 005096 381 HWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPG 431 (715)
Q Consensus 381 iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~ 431 (715)
+||...+..... ...-..+.++|+++|.+|++|+..|.+.+||+....
T Consensus 285 LyD~~~~~t~~~---ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 285 LYDTTRGVTLLA---KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSP 332 (545)
T ss_pred EEEcCCCeeeee---eecccceEEEEcCCCcEEEEEcCCceEEEEEeecCc
Confidence 999977643322 234568899999999999999999999999986533
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.00049 Score=71.85 Aligned_cols=222 Identities=12% Similarity=0.098 Sum_probs=130.9
Q ss_pred CCCCEEEEEeCCCeEEEEeCC-CCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeee---------
Q 005096 154 PTGRRLITGSQSGEFTLWNGQ-SFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKAN--------- 223 (715)
Q Consensus 154 pdg~~Latgs~dg~I~Iwd~~-~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~--------- 223 (715)
..++.|+.|+++| |+++++. ..+..+... ...|..+...++-+.|++-+ |+.|+++++..-.....
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~--~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~ 80 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRILK--LSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKS 80 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEee--cceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccc
Confidence 4577899999999 9999983 333333333 23399999998877776654 49999999876433221
Q ss_pred -----ecCCCCCeEEEE--EecCCCEEEEEECCCcEEEEECCCC-----eeEEEecccCCceEEEEEcCCCCEEEEEeCC
Q 005096 224 -----KSAHKESVRDLS--FCRTDLKFCSCSDDTTVKVWDFARC-----QEERSLTGHGWDVKSVDWHPTKSLLVSGGKD 291 (715)
Q Consensus 224 -----~~~h~~~I~~l~--~spd~~~Las~s~Dg~V~iwdl~~~-----~~~~~l~~~~~~I~si~~spdg~~L~sgs~D 291 (715)
.......+..++ -...+...+++....+|.+|.+... +..+.+. ....+.+++|. ++.|+++..+
T Consensus 81 ~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~--~~~i~v~~~~ 157 (275)
T PF00780_consen 81 RSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL--GNKICVGTSK 157 (275)
T ss_pred ccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEe--CCEEEEEeCC
Confidence 111222344444 1123333334444558888887542 3444444 44778999998 6678877764
Q ss_pred CcEEEEECCCCceeEEeccC------------CCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEE-EeecCCCCeE
Q 005096 292 SLVKLWDAKSGRELCSFHGH------------KNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELE-SFRGHRKDVT 358 (715)
Q Consensus 292 g~I~iwDl~s~~~~~~~~~~------------~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~-~~~~h~~~V~ 358 (715)
+ ..+.|+.++.....+... ...+..+.+. ++.+|++- |..-.+.|.. |+..+ ..-.......
T Consensus 158 ~-f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~Ll~~--~~~g~fv~~~-G~~~r~~~i~W~~~p~ 232 (275)
T PF00780_consen 158 G-FYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS-DNEFLLCY--DNIGVFVNKN-GEPSRKSTIQWSSAPQ 232 (275)
T ss_pred c-eEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC-CceEEEEe--cceEEEEcCC-CCcCcccEEEcCCchh
Confidence 4 888999976554333211 1223444443 44555543 3344444543 44433 2223455667
Q ss_pred EEEEccCCCCEEEEEeCCCcEEEEEcCCCCceE
Q 005096 359 ALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQV 391 (715)
Q Consensus 359 ~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~ 391 (715)
++++. ..+|++.+. +.|.||++.++..+.
T Consensus 233 ~~~~~---~pyli~~~~-~~iEV~~~~~~~lvQ 261 (275)
T PF00780_consen 233 SVAYS---SPYLIAFSS-NSIEVRSLETGELVQ 261 (275)
T ss_pred EEEEE---CCEEEEECC-CEEEEEECcCCcEEE
Confidence 77774 356666555 459999998885543
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.27 E-value=3.6e-05 Score=85.62 Aligned_cols=154 Identities=11% Similarity=0.201 Sum_probs=106.0
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeec-CCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCee--
Q 005096 186 DHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKS-AHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQE-- 262 (715)
Q Consensus 186 ~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~-~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~-- 262 (715)
...|.--+++..+++|+.|+..|.|++|+...+....... +....+..++++.++.++|+|+..|.|.++-+.....
T Consensus 33 ~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~ 112 (726)
T KOG3621|consen 33 PARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRD 112 (726)
T ss_pred cceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCc
Confidence 3445455666788999999999999999988776544333 3445566677788888899999999999998865321
Q ss_pred ---EEEe-cccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC----ceeEEeccCCCceEEEEEcCCCCEEEEEECCC
Q 005096 263 ---ERSL-TGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSG----RELCSFHGHKNMVLCVKWNQNGNWVLTASKDQ 334 (715)
Q Consensus 263 ---~~~l-~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~----~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg 334 (715)
+... ..|...|++++|++|+..|++|...|+|.+-.+++. -....+....+.|..|.+. ++ +|++++.-.
T Consensus 113 ~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~-q~-~LLVStl~r 190 (726)
T KOG3621|consen 113 LDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL-QS-YLLVSTLTR 190 (726)
T ss_pred ceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc-cc-eehHhhhhh
Confidence 1111 236789999999999999999999999999888762 1122333456677777765 33 344333232
Q ss_pred eEEEEECC
Q 005096 335 IIKLYDIR 342 (715)
Q Consensus 335 ~I~iwDl~ 342 (715)
..+++++
T Consensus 191 -~~Lc~tE 197 (726)
T KOG3621|consen 191 -CILCQTE 197 (726)
T ss_pred -hheeecc
Confidence 2345554
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.00089 Score=68.37 Aligned_cols=200 Identities=10% Similarity=0.144 Sum_probs=117.0
Q ss_pred EEecCCCCccEEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCceEEEEecc-CCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 005096 137 HTSLNKNRCSINRVLWTPTGR-RLITGSQSGEFTLWNGQSFNFEMILQAH-DHAIRSMVWSHNDNWMVSGDDGGAIKYWQ 214 (715)
Q Consensus 137 ~~~l~~H~~~I~~l~~spdg~-~Latgs~dg~I~Iwd~~~~~~~~~l~~h-~~~V~~l~~spdg~~L~tgs~dg~I~iwd 214 (715)
...+.+-...|+.|+|+++.+ ++++....+.|..++. +++.++.+... .+....|++..++.++++.-.++.+.+++
T Consensus 14 ~~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~ 92 (248)
T PF06977_consen 14 AKPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFT 92 (248)
T ss_dssp EEE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEE
T ss_pred eeECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEE
Confidence 446777777799999999866 4556667788888886 47777777654 36688999988887777766789999998
Q ss_pred CCCCc----e--eeee-----cCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCC---CeeEEEe--------cccCCc
Q 005096 215 NNMNN----V--KANK-----SAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFAR---CQEERSL--------TGHGWD 272 (715)
Q Consensus 215 ~~~~~----~--~~~~-----~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~---~~~~~~l--------~~~~~~ 272 (715)
+.... . ...+ ..++..+..|+|.+.++.|+++-...-..||.+.. ...+... ......
T Consensus 93 ~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 172 (248)
T PF06977_consen 93 IDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRD 172 (248)
T ss_dssp E----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS-
T ss_pred EeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecc
Confidence 73321 1 1111 12445689999999888888887776666766643 1111111 123456
Q ss_pred eEEEEEcCCCC-EEEEEeCCCcEEEEECCCCceeEEeccCC---------CceEEEEEcCCCCEEEEEECCCeEEEE
Q 005096 273 VKSVDWHPTKS-LLVSGGKDSLVKLWDAKSGRELCSFHGHK---------NMVLCVKWNQNGNWVLTASKDQIIKLY 339 (715)
Q Consensus 273 I~si~~spdg~-~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~---------~~I~sl~~spdg~~Lasgs~dg~I~iw 339 (715)
+.++++++... +++....+..|.++| .+|+.+..+.-.. .....|+|.++|+ |++.++-+..++|
T Consensus 173 ~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~-LYIvsEpNlfy~f 247 (248)
T PF06977_consen 173 LSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGN-LYIVSEPNLFYRF 247 (248)
T ss_dssp --EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT---EEEEETTTEEEEE
T ss_pred ccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCC-EEEEcCCceEEEe
Confidence 88999998654 666667778899999 5577665553222 2467899999986 4555566665554
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.0005 Score=70.15 Aligned_cols=198 Identities=10% Similarity=0.195 Sum_probs=114.8
Q ss_pred EEeccCCCEEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCceeeeecCC-CCCeEEEEEecCCCEEEEEECCCcEEEEECC
Q 005096 181 ILQAHDHAIRSMVWSHNDN-WMVSGDDGGAIKYWQNNMNNVKANKSAH-KESVRDLSFCRTDLKFCSCSDDTTVKVWDFA 258 (715)
Q Consensus 181 ~l~~h~~~V~~l~~spdg~-~L~tgs~dg~I~iwd~~~~~~~~~~~~h-~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~ 258 (715)
.+.+-...+..|+|.++.+ ++++....+.|..++.+ ++++..+... ......|++..++.++++.-.++.+.++++.
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~ 94 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID 94 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence 3445556799999999866 55667777888888864 6666665433 4678899998877766666568999999883
Q ss_pred CCe------eEEEec-----ccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCC---CceeEEe--------ccCCCceE
Q 005096 259 RCQ------EERSLT-----GHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKS---GRELCSF--------HGHKNMVL 316 (715)
Q Consensus 259 ~~~------~~~~l~-----~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s---~~~~~~~--------~~~~~~I~ 316 (715)
... ....+. .++..+..|+|++.++.|+++-+..-..||.++. ...+... ......+.
T Consensus 95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S 174 (248)
T PF06977_consen 95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLS 174 (248)
T ss_dssp ---TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---
T ss_pred ccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecccc
Confidence 321 111121 2445689999999988888887777677776653 2222111 12344688
Q ss_pred EEEEcCC-CCEEEEEECCCeEEEEECCCCeEEEEeecCC---------CCeEEEEEccCCCCEEEEEeCCCcEEEE
Q 005096 317 CVKWNQN-GNWVLTASKDQIIKLYDIRAMKELESFRGHR---------KDVTALAWHPFHEEYFVSGSLDGSIFHW 382 (715)
Q Consensus 317 sl~~spd-g~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~---------~~V~~l~~sp~~~~~l~sgs~DG~I~iw 382 (715)
++++++. +++++....+..|.++| .+|+.+..+.-.. ..--.|+|.+ +++++++ ++-+..++|
T Consensus 175 ~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~-~G~LYIv-sEpNlfy~f 247 (248)
T PF06977_consen 175 GLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDP-DGNLYIV-SEPNLFYRF 247 (248)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-T-T--EEEE-ETTTEEEEE
T ss_pred ceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECC-CCCEEEE-cCCceEEEe
Confidence 9999995 55666677888999999 6688777665433 2467899987 5554444 445555444
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.0015 Score=71.81 Aligned_cols=260 Identities=13% Similarity=0.050 Sum_probs=168.4
Q ss_pred cEEEEEEcCCCCEEEEEeC-CCeEEEEeCCCCceEEEEeccC-CCEEEEEEcCCCCEE-EEEeCCCcEEEEeCCCCceee
Q 005096 146 SINRVLWTPTGRRLITGSQ-SGEFTLWNGQSFNFEMILQAHD-HAIRSMVWSHNDNWM-VSGDDGGAIKYWQNNMNNVKA 222 (715)
Q Consensus 146 ~I~~l~~spdg~~Latgs~-dg~I~Iwd~~~~~~~~~l~~h~-~~V~~l~~spdg~~L-~tgs~dg~I~iwd~~~~~~~~ 222 (715)
....+.+.+++..+.+... ...+.+.+.. ......+..-. ..-..++++++++.+ ++...+..|.+.|.++.....
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~-~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~ 110 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDAT-SNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLG 110 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccc-cceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccceee
Confidence 4566777888865554433 2245555554 22222211111 334567888888755 455556899999987777666
Q ss_pred eecCCCCCeEEEEEecCCCEEEEEEC---CCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEe-CCCcEEEEE
Q 005096 223 NKSAHKESVRDLSFCRTDLKFCSCSD---DTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGG-KDSLVKLWD 298 (715)
Q Consensus 223 ~~~~h~~~I~~l~~spd~~~Las~s~---Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs-~Dg~I~iwD 298 (715)
....-. .-..++++++++.++++.. ++++.+.|-.+.+.+......... ..++++++++.++++. .++.|.++|
T Consensus 111 ~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~ 188 (381)
T COG3391 111 SIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVID 188 (381)
T ss_pred Eeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEe
Confidence 553322 6678999999988877765 688999999888888775543334 8999999999666655 788999999
Q ss_pred CCCCceeE-E---eccCCCceEEEEEcCCCCEEEEEECC---CeEEEEECCCCeEEEEeecCCC-CeEEEEEccCCCCEE
Q 005096 299 AKSGRELC-S---FHGHKNMVLCVKWNQNGNWVLTASKD---QIIKLYDIRAMKELESFRGHRK-DVTALAWHPFHEEYF 370 (715)
Q Consensus 299 l~s~~~~~-~---~~~~~~~I~sl~~spdg~~Lasgs~d---g~I~iwDl~t~~~~~~~~~h~~-~V~~l~~sp~~~~~l 370 (715)
.++..... . ...-...-..+.++++++++++.... +.+.+.|..++........-.. ....+.++| .+..+
T Consensus 189 ~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p-~g~~~ 267 (381)
T COG3391 189 TSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDP-AGKAA 267 (381)
T ss_pred CCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECC-CCCEE
Confidence 77655442 1 01122334678899999977766544 5899999998887776322222 567788899 55555
Q ss_pred EEE-eCCCcEEEEEcCCCCceEEEeec--cCCCEEEEEEcCC
Q 005096 371 VSG-SLDGSIFHWLVGHETPQVEIHNV--HDNTVWDLAWHPI 409 (715)
Q Consensus 371 ~sg-s~DG~I~iwd~~~~~~~~~~~~~--h~~~V~~l~~spd 409 (715)
.+. +..+.+.+.|..+.......... ....+..+++.+.
T Consensus 268 yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 309 (381)
T COG3391 268 YVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISPL 309 (381)
T ss_pred EEEecCCCeEEEEeCCCCceeeeecccccccccceeccceee
Confidence 544 55578888888776554433321 1223555555543
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.0012 Score=73.34 Aligned_cols=238 Identities=13% Similarity=0.073 Sum_probs=131.6
Q ss_pred EEEEEEcCCCCEEEEE-eCCC----cEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCC-----------cE
Q 005096 189 IRSMVWSHNDNWMVSG-DDGG----AIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDT-----------TV 252 (715)
Q Consensus 189 V~~l~~spdg~~L~tg-s~dg----~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg-----------~V 252 (715)
+..+++++|+++||.+ +..| .|+|+|+++++.+..... ......+.|..|++.|+....+. .|
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~-~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v 204 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIE-NPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQV 204 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEE-EEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccc-ccccceEEEeCCCCEEEEEEeCcccccccCCCCcEE
Confidence 3467889999998754 3444 499999999976543211 11223499999988877665433 37
Q ss_pred EEEECCCCeeE--EEecccCCc--eEEEEEcCCCCEEEEEeCC----CcEEEEECCCC----ceeEEeccCCCce-EEEE
Q 005096 253 KVWDFARCQEE--RSLTGHGWD--VKSVDWHPTKSLLVSGGKD----SLVKLWDAKSG----RELCSFHGHKNMV-LCVK 319 (715)
Q Consensus 253 ~iwdl~~~~~~--~~l~~~~~~--I~si~~spdg~~L~sgs~D----g~I~iwDl~s~----~~~~~~~~~~~~I-~sl~ 319 (715)
++|++.+.... ..+...... ...+.++.|+++|++.... ..|.+.|+..+ .....+......+ ..+.
T Consensus 205 ~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~ 284 (414)
T PF02897_consen 205 YRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVD 284 (414)
T ss_dssp EEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEE
T ss_pred EEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEE
Confidence 88888765433 444433332 5688899999987764432 34788888864 2333333333333 3344
Q ss_pred EcCCCCEEEEEE---CCCeEEEEECCCCeE---EEEeecCCC--CeEEEEEccCCCCEEEEEeCCC--cEEEEEcCCCCc
Q 005096 320 WNQNGNWVLTAS---KDQIIKLYDIRAMKE---LESFRGHRK--DVTALAWHPFHEEYFVSGSLDG--SIFHWLVGHETP 389 (715)
Q Consensus 320 ~spdg~~Lasgs---~dg~I~iwDl~t~~~---~~~~~~h~~--~V~~l~~sp~~~~~l~sgs~DG--~I~iwd~~~~~~ 389 (715)
.. ++.+++... .++.|...++.+... ...+..+.. .+..+... ++.+++....++ .|+++++..+..
T Consensus 285 ~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~--~~~Lvl~~~~~~~~~l~v~~~~~~~~ 361 (414)
T PF02897_consen 285 HH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLF--KDYLVLSYRENGSSRLRVYDLDDGKE 361 (414)
T ss_dssp EE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEE--TTEEEEEEEETTEEEEEEEETT-TEE
T ss_pred cc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEE--CCEEEEEEEECCccEEEEEECCCCcE
Confidence 33 444444333 335777788877652 224444555 35555543 556666666666 478888873333
Q ss_pred eEEEeeccCCCEEEEEEcCCCCEE-EE-EECC--CeEEEEecCCC
Q 005096 390 QVEIHNVHDNTVWDLAWHPIGYLL-CS-GSND--HTTKFWCRNRP 430 (715)
Q Consensus 390 ~~~~~~~h~~~V~~l~~spdg~~L-~s-gs~D--g~I~iWdl~~~ 430 (715)
...+.....+.|..+....++..| ++ .|-- ++|..||+.+.
T Consensus 362 ~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~ 406 (414)
T PF02897_consen 362 SREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATG 406 (414)
T ss_dssp EEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTT
T ss_pred EeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCC
Confidence 334433334556666655554333 32 3332 45666666543
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.20 E-value=4.1e-06 Score=59.39 Aligned_cols=36 Identities=31% Similarity=0.741 Sum_probs=34.2
Q ss_pred EEecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEe
Q 005096 137 HTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWN 172 (715)
Q Consensus 137 ~~~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd 172 (715)
..++.+|.+.|++|+|++++++|++++.|+.|+|||
T Consensus 4 ~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 4 VRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 457899999999999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.00057 Score=79.89 Aligned_cols=304 Identities=16% Similarity=0.106 Sum_probs=156.3
Q ss_pred EeccCCCEEEEEEcCCCCEEEEEeCCCc--EEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEE------CCCc--
Q 005096 182 LQAHDHAIRSMVWSHNDNWMVSGDDGGA--IKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCS------DDTT-- 251 (715)
Q Consensus 182 l~~h~~~V~~l~~spdg~~L~tgs~dg~--I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s------~Dg~-- 251 (715)
...+...+..+.|++++..++..+.++. ..+|.+.... .+..+...|....|++++..++... .|+.
T Consensus 55 ~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~l~l~~~~g---~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 131 (620)
T COG1506 55 LLTFGGGVSELRWSPDGSVLAFVSTDGGRVAQLYLVDVGG---LITKTAFGVSDARWSPDGDRIAFLTAEGASKRDGGDH 131 (620)
T ss_pred ccccCCcccccccCCCCCEEEEEeccCCCcceEEEEecCC---ceeeeecccccceeCCCCCeEEEEecccccccCCcee
Confidence 4456778889999999999987763332 3444333221 3344556677788888887776621 1222
Q ss_pred -----EEEEECCCC-e-----------eEEEecccCCceEEEEEcCCCCEEEEEeCCCc-------EEEEECCCCceeEE
Q 005096 252 -----VKVWDFARC-Q-----------EERSLTGHGWDVKSVDWHPTKSLLVSGGKDSL-------VKLWDAKSGRELCS 307 (715)
Q Consensus 252 -----V~iwdl~~~-~-----------~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~-------I~iwDl~s~~~~~~ 307 (715)
+.+|....+ + ...........+....++.+++.++....+.. ..++...+ ..+..
T Consensus 132 ~~~~~~~~~~~~~g~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 210 (620)
T COG1506 132 LFVDRLPVWFDGRGGERSDLYVVDIESKLIKLGLGNLDVVSFATDGDGRLVASIRLDDDADPWVTNLYVLIEGN-GELES 210 (620)
T ss_pred eeecccceeecCCCCcccceEEEccCcccccccCCCCceeeeeeCCCCceeEEeeeccccCCceEeeEEEecCC-CceEE
Confidence 333333222 1 11122223445666777766676665544332 23333323 33444
Q ss_pred eccCCCceEEEEEcCCCCEEEEEECC-C-------eEEEEECCCCeEEEEeecCC--CCeEEEEEccCCCCEEEEEeC-C
Q 005096 308 FHGHKNMVLCVKWNQNGNWVLTASKD-Q-------IIKLYDIRAMKELESFRGHR--KDVTALAWHPFHEEYFVSGSL-D 376 (715)
Q Consensus 308 ~~~~~~~I~sl~~spdg~~Lasgs~d-g-------~I~iwDl~t~~~~~~~~~h~--~~V~~l~~sp~~~~~l~sgs~-D 376 (715)
+......+..+.|..+++.++..+.. . .+.++|.+.++....+...+ .....+...-.+..+++++.. .
T Consensus 211 ~~~~~~~~~~~~~~~~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (620)
T COG1506 211 LTPGEGSISKLAFDADGKSIALLGTESDRGLAEGDFILLLDGELGEVDGDLSSGDDTRGAWAVEGGLDGDGLLFIATDGG 290 (620)
T ss_pred EcCCCceeeeeeeCCCCCeeEEeccCCccCccccceEEEEeccccccceeeccCCcccCcHHhccccCCCcEEEEEecCC
Confidence 55556668899999999865554422 2 24444422222222111111 111111111224445555554 6
Q ss_pred CcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEE-ECC---CeEEEEecCCCCCcccccccccCCccccceeeE
Q 005096 377 GSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSG-SND---HTTKFWCRNRPGDTARDKFNMGQNQGYGEQNAV 452 (715)
Q Consensus 377 G~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sg-s~D---g~I~iWdl~~~~~~~~~~~~~~~~~g~~~~~~~ 452 (715)
|...++++................|..+++ +++.|+.. +.. ..+.+|+.....+.... . ......+
T Consensus 291 g~~~l~~~~~~~~~~~~~~~~~~~v~~f~~--~~~~~~~~~s~~~~p~~i~~~~~~~~~~~~~~-~-~~~~~~~------ 360 (620)
T COG1506 291 GSSPLFRVDDLGGGVEGLSGDDGGVPGFDV--DGRKLALAYSSPTEPPEIYLYDRGEEAKLTSS-N-NSGLKKV------ 360 (620)
T ss_pred CceEEEEEeccCCceeeecCCCceEEEEee--CCCEEEEEecCCCCccceEEEcCCCceEEeec-c-ccccccc------
Confidence 777777776544444555444466777766 55444443 222 34566654111111100 0 0000000
Q ss_pred EeecCCCCccCCCCCCCCCCCCCCCCCCCC-CCCCcccCCCcCCCCCCCCccccCCCCCCCCC-CCCCCCCC
Q 005096 453 FAGRMPGNFPLPEGPTTPGPFAPGLTRNEG-TIPGVGVAMPLSIPSFDSSAQGEQKQPLSMPL-GAPPLPPG 522 (715)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~g~~~~g~gr~~g-tv~Gy~~~~~l~~p~~~~~~~~~~~~~~~~~~-~~p~~~~~ 522 (715)
...-+...-+..++| +++||-+. |.+++.++|||+-+.+ |||-..-+
T Consensus 361 ---------------~~~~~e~~~~~~~dG~~i~~~l~~--------P~~~~~~k~yP~i~~~hGGP~~~~~ 409 (620)
T COG1506 361 ---------------KLAEPEPVTYKSNDGETIHGWLYK--------PPGFDPRKKYPLIVYIHGGPSAQVG 409 (620)
T ss_pred ---------------ccCCceEEEEEcCCCCEEEEEEec--------CCCCCCCCCCCEEEEeCCCCccccc
Confidence 011111111233334 99999998 9999999999999999 88855544
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.00087 Score=70.77 Aligned_cols=216 Identities=11% Similarity=0.068 Sum_probs=135.2
Q ss_pred EEEcCCCCEEE-EEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeecC--
Q 005096 150 VLWTPTGRRLI-TGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSA-- 226 (715)
Q Consensus 150 l~~spdg~~La-tgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~~-- 226 (715)
-.|.++...|+ +--..+.|.-||..+++... +. +.+.+.++....++..|+++.. -+.+++.+++..+..+..
T Consensus 30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~-~~-~p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~~~ 105 (307)
T COG3386 30 PVWDPDRGALLWVDILGGRIHRLDPETGKKRV-FP-SPGGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLAEPE 105 (307)
T ss_pred ccCcCCCCEEEEEeCCCCeEEEecCCcCceEE-EE-CCCCcccceeecCCCeEEEEcc--ccEEEeccCCceeEEecccc
Confidence 45677776444 55567889999887654332 22 2344456655555666666543 356666655554222211
Q ss_pred ---CCCCeEEEEEecCCCEEEEEEC-----------CCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCC-
Q 005096 227 ---HKESVRDLSFCRTDLKFCSCSD-----------DTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKD- 291 (715)
Q Consensus 227 ---h~~~I~~l~~spd~~~Las~s~-----------Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~D- 291 (715)
.....+++.+.++|.+.++... -|.|+.+|. .+..++.+..+-..-+.|+||||++.|+.+...
T Consensus 106 ~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~ 184 (307)
T COG3386 106 DGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPA 184 (307)
T ss_pred CCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCC
Confidence 1245677888888887665443 133444443 456666666555666799999999887777654
Q ss_pred CcEEEEECCC--C----ce-eEEeccCCCceEEEEEcCCCCEEEEEECCC-eEEEEECCCCeEEEEeecCCCCeEEEEEc
Q 005096 292 SLVKLWDAKS--G----RE-LCSFHGHKNMVLCVKWNQNGNWVLTASKDQ-IIKLYDIRAMKELESFRGHRKDVTALAWH 363 (715)
Q Consensus 292 g~I~iwDl~s--~----~~-~~~~~~~~~~I~sl~~spdg~~Lasgs~dg-~I~iwDl~t~~~~~~~~~h~~~V~~l~~s 363 (715)
+.|.-|++.. + +. ...+....+..-.++...+|++.+++..+| .|.+|+.. ++.+..++.....+++++|-
T Consensus 185 ~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~Fg 263 (307)
T COG3386 185 NRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFG 263 (307)
T ss_pred CeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEe
Confidence 7788887652 1 11 122223345566778888888776555454 99999988 99999999888889999985
Q ss_pred cCCCCEEE
Q 005096 364 PFHEEYFV 371 (715)
Q Consensus 364 p~~~~~l~ 371 (715)
-.+.+.|+
T Consensus 264 G~~~~~L~ 271 (307)
T COG3386 264 GPDLNTLY 271 (307)
T ss_pred CCCcCEEE
Confidence 43334333
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.15 E-value=6.4e-06 Score=58.35 Aligned_cols=38 Identities=29% Similarity=0.719 Sum_probs=36.3
Q ss_pred ceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 005096 177 NFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQ 214 (715)
Q Consensus 177 ~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd 214 (715)
+.+.++.+|.+.|++|+|++++++|++++.|+.|+|||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 57889999999999999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.00092 Score=73.98 Aligned_cols=207 Identities=9% Similarity=0.080 Sum_probs=112.3
Q ss_pred cEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCe------eEEEecccCCceEEEEEcCCC
Q 005096 209 AIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQ------EERSLTGHGWDVKSVDWHPTK 282 (715)
Q Consensus 209 ~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~------~~~~l~~~~~~I~si~~spdg 282 (715)
.|+||+.... .+..+.-..+.|.++.|+.+ ..|++...||++++||+.... .+.........+..+.+..+|
T Consensus 62 ~I~iys~sG~-ll~~i~w~~~~iv~~~wt~~-e~LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~~G 139 (410)
T PF04841_consen 62 SIQIYSSSGK-LLSSIPWDSGRIVGMGWTDD-EELVVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFYKNG 139 (410)
T ss_pred EEEEECCCCC-EeEEEEECCCCEEEEEECCC-CeEEEEEcCCEEEEEeCCCceeechhhhccccCcccccccccccCCCC
Confidence 3677765433 33333333388999999875 556677899999999985333 111111111222233333344
Q ss_pred CEEEEEeCCCcEEEEECCCCc-eeEEecc----------CCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEee
Q 005096 283 SLLVSGGKDSLVKLWDAKSGR-ELCSFHG----------HKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFR 351 (715)
Q Consensus 283 ~~L~sgs~Dg~I~iwDl~s~~-~~~~~~~----------~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~ 351 (715)
+++-..++.|.+.+-.... ..+.+.. .........++.+....+....++.|.+.|-...+. +
T Consensus 140 --ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i- 213 (410)
T PF04841_consen 140 --IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---I- 213 (410)
T ss_pred --EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---c-
Confidence 3333344545444322111 1111110 000000123444455555555555666444332211 1
Q ss_pred cCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEe
Q 005096 352 GHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWC 426 (715)
Q Consensus 352 ~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWd 426 (715)
...+.+..+++|| ++++||.-..+|.+.|.+.+-.+...++..........+.|.-++..++.- +..|.+..
T Consensus 214 ~~~~~i~~iavSp-ng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav~l~~--~~~l~lvg 285 (410)
T PF04841_consen 214 DSDGPIIKIAVSP-NGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAVVLSW--EDELLLVG 285 (410)
T ss_pred cCCCCeEEEEECC-CCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCcEEEEe--CCEEEEEC
Confidence 1346899999999 899999999999999988766665555554445677788888765444333 34555554
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.0013 Score=68.55 Aligned_cols=219 Identities=11% Similarity=0.049 Sum_probs=125.6
Q ss_pred CCCCEEEEEeCCCcEEEEeCCC-CceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEe--------
Q 005096 196 HNDNWMVSGDDGGAIKYWQNNM-NNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSL-------- 266 (715)
Q Consensus 196 pdg~~L~tgs~dg~I~iwd~~~-~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l-------- 266 (715)
..++.|++|+++| |.++++.. ....... ....|..+...++-+.|++-+ |+.|+++++.........
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~ 80 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKS 80 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccc
Confidence 3578899999988 88888832 2332222 233399999998877777665 499999998654433311
Q ss_pred ------cccCCceEEEE--EcCCCCEEEEEeCCCcEEEEECCCC-----ceeEEeccCCCceEEEEEcCCCCEEEEEECC
Q 005096 267 ------TGHGWDVKSVD--WHPTKSLLVSGGKDSLVKLWDAKSG-----RELCSFHGHKNMVLCVKWNQNGNWVLTASKD 333 (715)
Q Consensus 267 ------~~~~~~I~si~--~spdg~~L~sgs~Dg~I~iwDl~s~-----~~~~~~~~~~~~I~sl~~spdg~~Lasgs~d 333 (715)
......+..++ -...+...++......|.||..... +.++++. -...+.+++|. ++.|+++..+
T Consensus 81 ~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~--~~~i~v~~~~ 157 (275)
T PF00780_consen 81 RSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL--GNKICVGTSK 157 (275)
T ss_pred ccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEe--CCEEEEEeCC
Confidence 11223344444 1123333333444468888877542 3445554 45778999998 6678877744
Q ss_pred CeEEEEECCCCeEEEEeecCC------------CCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCE
Q 005096 334 QIIKLYDIRAMKELESFRGHR------------KDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTV 401 (715)
Q Consensus 334 g~I~iwDl~t~~~~~~~~~h~------------~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V 401 (715)
...+.|+.++.....+.... ..+..+... ++.+|++. |..-.+.|..........+. -....
T Consensus 158 -~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~e~Ll~~--~~~g~fv~~~G~~~r~~~i~-W~~~p 231 (275)
T PF00780_consen 158 -GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS--DNEFLLCY--DNIGVFVNKNGEPSRKSTIQ-WSSAP 231 (275)
T ss_pred -ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC--CceEEEEe--cceEEEEcCCCCcCcccEEE-cCCch
Confidence 47788998766544432211 223333443 34555543 33333334432221111111 23356
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEecCCC
Q 005096 402 WDLAWHPIGYLLCSGSNDHTTKFWCRNRP 430 (715)
Q Consensus 402 ~~l~~spdg~~L~sgs~Dg~I~iWdl~~~ 430 (715)
.++++. ..+|++.+. +.|.||++...
T Consensus 232 ~~~~~~--~pyli~~~~-~~iEV~~~~~~ 257 (275)
T PF00780_consen 232 QSVAYS--SPYLIAFSS-NSIEVRSLETG 257 (275)
T ss_pred hEEEEE--CCEEEEECC-CEEEEEECcCC
Confidence 667664 456777665 55999999765
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.00041 Score=74.33 Aligned_cols=211 Identities=15% Similarity=0.206 Sum_probs=124.4
Q ss_pred CeEEEEeCCCCceEEEEeccC-CCEEEEE---EcCC----CCEEEEEeC----------CCcEEEEeCCCC-----ceee
Q 005096 166 GEFTLWNGQSFNFEMILQAHD-HAIRSMV---WSHN----DNWMVSGDD----------GGAIKYWQNNMN-----NVKA 222 (715)
Q Consensus 166 g~I~Iwd~~~~~~~~~l~~h~-~~V~~l~---~spd----g~~L~tgs~----------dg~I~iwd~~~~-----~~~~ 222 (715)
..|+|.|..+.+.+..+.... ..+.+++ +..+ ..+|++|+. .|.|.++++... ++..
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 368999988888777665433 3355443 3322 467777642 288999998884 2221
Q ss_pred e-ecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCe-eEEEe-cccCCceEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 005096 223 N-KSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQ-EERSL-TGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDA 299 (715)
Q Consensus 223 ~-~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~-~~~~l-~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl 299 (715)
. .....+.|.+|+-. ++ +|+++. ++.|.+|++...+ ....- ......+.++... +++|++|+....|.++..
T Consensus 82 i~~~~~~g~V~ai~~~-~~-~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~ 156 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF-NG-RLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRY 156 (321)
T ss_dssp EEEEEESS-EEEEEEE-TT-EEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEE
T ss_pred EEEEeecCcceEhhhh-CC-EEEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEE
Confidence 1 23457788888877 33 444444 4789999997766 33222 2233366666665 669999998888887754
Q ss_pred CC-CceeEEe--ccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCC-------C--eE--EEEeecCCCCeEEE---EE
Q 005096 300 KS-GRELCSF--HGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRA-------M--KE--LESFRGHRKDVTAL---AW 362 (715)
Q Consensus 300 ~s-~~~~~~~--~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t-------~--~~--~~~~~~h~~~V~~l---~~ 362 (715)
+. .+.+..+ .....+++++.|-.|++.++++..+|.|.++.... + +. +..+. ....|+++ ++
T Consensus 157 ~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~-lg~~v~~~~~~~l 235 (321)
T PF03178_consen 157 DEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFH-LGDIVNSFRRGSL 235 (321)
T ss_dssp ETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE--SS-EEEEEE--S
T ss_pred EccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEE-CCCccceEEEEEe
Confidence 43 2323333 22456789999986667999999999999998752 1 12 22222 23456666 33
Q ss_pred ccC--CCC-----EEEEEeCCCcEEEE
Q 005096 363 HPF--HEE-----YFVSGSLDGSIFHW 382 (715)
Q Consensus 363 sp~--~~~-----~l~sgs~DG~I~iw 382 (715)
.+. +.+ .++.++.+|.|.+.
T Consensus 236 ~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 236 IPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp S--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred eecCCCCcccccceEEEEecCCEEEEE
Confidence 331 112 47777788887743
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.0006 Score=79.58 Aligned_cols=143 Identities=13% Similarity=0.163 Sum_probs=100.2
Q ss_pred CCCEEEEE-eCCCcEEEEeCCCCceeeeecCCCCC-eEEEEEec-----CCCEEEEEECCCcEEEEECCCCe--eEEE--
Q 005096 197 NDNWMVSG-DDGGAIKYWQNNMNNVKANKSAHKES-VRDLSFCR-----TDLKFCSCSDDTTVKVWDFARCQ--EERS-- 265 (715)
Q Consensus 197 dg~~L~tg-s~dg~I~iwd~~~~~~~~~~~~h~~~-I~~l~~sp-----d~~~Las~s~Dg~V~iwdl~~~~--~~~~-- 265 (715)
+.++|+.. .....|+-.|++.++++..+..+... |..++-.. +....++|-.++.|..||.+-.. .+..
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~ 571 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQS 571 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccc
Confidence 33444443 34578999999999999999887755 55554321 12345677788899999986432 2211
Q ss_pred -ecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEEC
Q 005096 266 -LTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDI 341 (715)
Q Consensus 266 -l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl 341 (715)
........+|++-+.+| +||+|+.+|.||+||--..+....+.+...+|..|..+.||+||++.| +..|.|+|.
T Consensus 572 k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 572 KQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred cccccCCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence 11244567788877665 689999999999999543333444556788999999999999999887 556777775
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.0066 Score=70.50 Aligned_cols=187 Identities=13% Similarity=0.082 Sum_probs=121.1
Q ss_pred EEEEECCCCeeEEEeccc----CCceEEEEEcCC-CCEEEEEeC----------CCcEEEEECCCCceeEEeccC--CCc
Q 005096 252 VKVWDFARCQEERSLTGH----GWDVKSVDWHPT-KSLLVSGGK----------DSLVKLWDAKSGRELCSFHGH--KNM 314 (715)
Q Consensus 252 V~iwdl~~~~~~~~l~~~----~~~I~si~~spd-g~~L~sgs~----------Dg~I~iwDl~s~~~~~~~~~~--~~~ 314 (715)
++++|-++.+.+....-. ...|.++.|..| +.++++|.. .|.|.||.....+.+.....+ .+.
T Consensus 752 l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Ga 831 (1096)
T KOG1897|consen 752 LRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGA 831 (1096)
T ss_pred EEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccc
Confidence 666676665554433211 123556668877 567777652 477888877764444443322 333
Q ss_pred eEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCc--eEE
Q 005096 315 VLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETP--QVE 392 (715)
Q Consensus 315 I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~--~~~ 392 (715)
+.++..- +|++||. -+..|++|++.+.+.++.-..+...+..+...- .++.|++|..-+.|.+...+..+. ...
T Consensus 832 v~aL~~f-ngkllA~--In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v-~gdeI~VgDlm~Sitll~y~~~eg~f~ev 907 (1096)
T KOG1897|consen 832 VYALVEF-NGKLLAG--INQSVRLYEWTTERELRIECNISNPIIALDLQV-KGDEIAVGDLMRSITLLQYKGDEGNFEEV 907 (1096)
T ss_pred eeehhhh-CCeEEEe--cCcEEEEEEccccceehhhhcccCCeEEEEEEe-cCcEEEEeeccceEEEEEEeccCCceEEe
Confidence 4444322 5665554 467899999999988888888888888888877 888999999888888776655542 222
Q ss_pred EeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCCCCCcccccccccCC
Q 005096 393 IHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGDTARDKFNMGQN 443 (715)
Q Consensus 393 ~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~~~~~~~~~~~~~ 443 (715)
...-+...++++.+-.+ ..++.+..+|.+.+-..+....+..++......
T Consensus 908 ArD~~p~Wmtaveil~~-d~ylgae~~gNlf~v~~d~~~~td~eR~~l~~~ 957 (1096)
T KOG1897|consen 908 ARDYNPNWMTAVEILDD-DTYLGAENSGNLFTVRKDSDATTDEERQILEEV 957 (1096)
T ss_pred ehhhCccceeeEEEecC-ceEEeecccccEEEEEecCCCCchhhhhcccce
Confidence 23335667888887754 455666778999998887666655555444433
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.0044 Score=66.38 Aligned_cols=245 Identities=11% Similarity=0.079 Sum_probs=119.9
Q ss_pred eCCCCceEEEEeccCCCEEEE-----EEcCCCCEEEE-EeCCCc--EEEEeCCCCceeeeecCCCCCeEEEEEecCCCEE
Q 005096 172 NGQSFNFEMILQAHDHAIRSM-----VWSHNDNWMVS-GDDGGA--IKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKF 243 (715)
Q Consensus 172 d~~~~~~~~~l~~h~~~V~~l-----~~spdg~~L~t-gs~dg~--I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~L 243 (715)
|-.++..+..+.........+ +|..||+.|+. +..||. +.+.|+++++................++++++.|
T Consensus 16 D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~ 95 (386)
T PF14583_consen 16 DPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRAL 95 (386)
T ss_dssp -TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEE
T ss_pred CCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeE
Confidence 566777777776655544444 56678866654 444554 6666888887766554433434456778888888
Q ss_pred EEEECCCcEEEEECCCCeeEEEecccCCceEEEEE--cCCCCEEEEEeC----------------------CCcEEEEEC
Q 005096 244 CSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDW--HPTKSLLVSGGK----------------------DSLVKLWDA 299 (715)
Q Consensus 244 as~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~--spdg~~L~sgs~----------------------Dg~I~iwDl 299 (715)
+-...+..|+..|+++.+....+......+-...| +.|+..++..-. ...|...|+
T Consensus 96 ~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl 175 (386)
T PF14583_consen 96 YYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDL 175 (386)
T ss_dssp EEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEET
T ss_pred EEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEEC
Confidence 77777778999999998877777666666654555 445655543211 134666788
Q ss_pred CCCceeEEeccCCCceEEEEEcCCC-CEEEEEEC---CC-eEEEEECCC-CeEEEEeecCC--CCeEEEEEccCCCCEEE
Q 005096 300 KSGRELCSFHGHKNMVLCVKWNQNG-NWVLTASK---DQ-IIKLYDIRA-MKELESFRGHR--KDVTALAWHPFHEEYFV 371 (715)
Q Consensus 300 ~s~~~~~~~~~~~~~I~sl~~spdg-~~Lasgs~---dg-~I~iwDl~t-~~~~~~~~~h~--~~V~~l~~sp~~~~~l~ 371 (715)
++|+....+. ...++..+.|+|.. .+|+.|-+ +. .-|||-+++ +..++.+..+. ..+..=-|.+++..++.
T Consensus 176 ~tG~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y 254 (386)
T PF14583_consen 176 KTGERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWY 254 (386)
T ss_dssp TT--EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEE
T ss_pred CCCceeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEE
Confidence 8877655554 67789999999954 45555442 11 124554432 44444443332 23444467885544444
Q ss_pred EEe-C---CCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCC
Q 005096 372 SGS-L---DGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDH 420 (715)
Q Consensus 372 sgs-~---DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg 420 (715)
.+. . +..|.-+|..+..... +. .......+-.++||.++|--+.|.
T Consensus 255 ~~~~~~~~~~~i~~~d~~t~~~~~-~~--~~p~~~H~~ss~Dg~L~vGDG~d~ 304 (386)
T PF14583_consen 255 DSYTPGGQDFWIAGYDPDTGERRR-LM--EMPWCSHFMSSPDGKLFVGDGGDA 304 (386)
T ss_dssp EEEETTT--EEEEEE-TTT--EEE-EE--EE-SEEEEEE-TTSSEEEEEE---
T ss_pred EeecCCCCceEEEeeCCCCCCceE-EE--eCCceeeeEEcCCCCEEEecCCCC
Confidence 333 2 2345556776654432 11 122455677788999887766553
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.0014 Score=70.33 Aligned_cols=211 Identities=14% Similarity=0.107 Sum_probs=122.3
Q ss_pred cEEEEeCCCCceeeeecC-CCCCeEEEEEec-------CCCEEEEEEC----------CCcEEEEECCCC----eeEEEe
Q 005096 209 AIKYWQNNMNNVKANKSA-HKESVRDLSFCR-------TDLKFCSCSD----------DTTVKVWDFARC----QEERSL 266 (715)
Q Consensus 209 ~I~iwd~~~~~~~~~~~~-h~~~I~~l~~sp-------d~~~Las~s~----------Dg~V~iwdl~~~----~~~~~l 266 (715)
.|+|.|..+.+.+..+.. ..+.+.+++... ...+|++|+. .|.|.++++.+. ..+..+
T Consensus 3 ~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i 82 (321)
T PF03178_consen 3 SIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLI 82 (321)
T ss_dssp EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEE
T ss_pred EEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEE
Confidence 567777766655544432 233444444332 2456776653 288999999873 122222
Q ss_pred --cccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCc-eeEEec-cCCCceEEEEEcCCCCEEEEEECCCeEEEEECC
Q 005096 267 --TGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGR-ELCSFH-GHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIR 342 (715)
Q Consensus 267 --~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~-~~~~~~-~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~ 342 (715)
....+.|++|+-. +.+|+++. ++.|++|++...+ .+..-. .....++++... +++|++|.....|.++..+
T Consensus 83 ~~~~~~g~V~ai~~~--~~~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~ 157 (321)
T PF03178_consen 83 HSTEVKGPVTAICSF--NGRLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRYD 157 (321)
T ss_dssp EEEEESS-EEEEEEE--TTEEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEE
T ss_pred EEEeecCcceEhhhh--CCEEEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEEE
Confidence 2356789988877 33455444 4889999998777 332221 123356666655 6699999988888877544
Q ss_pred C-CeEEEEee--cCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCC-------C-ceEEEeec-cCCCEEEE---EEc
Q 005096 343 A-MKELESFR--GHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHE-------T-PQVEIHNV-HDNTVWDL---AWH 407 (715)
Q Consensus 343 t-~~~~~~~~--~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~-------~-~~~~~~~~-h~~~V~~l---~~s 407 (715)
. .+.+..+. .....++++.+..++ +.+++++.+|.|.++..... . .+...... ....|+++ ++.
T Consensus 158 ~~~~~l~~va~d~~~~~v~~~~~l~d~-~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~ 236 (321)
T PF03178_consen 158 EENNKLILVARDYQPRWVTAAEFLVDE-DTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLI 236 (321)
T ss_dssp TTTE-EEEEEEESS-BEEEEEEEE-SS-SEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS
T ss_pred ccCCEEEEEEecCCCccEEEEEEecCC-cEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEee
Confidence 3 33333332 235568888888634 69999999999999987631 1 22222222 34567777 444
Q ss_pred C--CC------CEEEEEECCCeEEEE
Q 005096 408 P--IG------YLLCSGSNDHTTKFW 425 (715)
Q Consensus 408 p--dg------~~L~sgs~Dg~I~iW 425 (715)
+ .+ ..++.++.+|.|.+.
T Consensus 237 ~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 237 PRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp --SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred ecCCCCcccccceEEEEecCCEEEEE
Confidence 4 12 248888899998844
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.008 Score=63.17 Aligned_cols=271 Identities=8% Similarity=0.076 Sum_probs=123.9
Q ss_pred CCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEE--ecc---CCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 005096 143 NRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMIL--QAH---DHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNM 217 (715)
Q Consensus 143 H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l--~~h---~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~ 217 (715)
-...+.+|.|..+..-+++|. .+.|.. ..+.++.-... ... .....+|.|.. .+.+++| ..+. .+...+.
T Consensus 15 t~~~l~dV~F~d~~~G~~VG~-~g~il~-T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~-~~g~ivG-~~g~-ll~T~Dg 89 (302)
T PF14870_consen 15 TDKPLLDVAFVDPNHGWAVGA-YGTILK-TTDGGKTWQPVSLDLDNPFDYHLNSISFDG-NEGWIVG-EPGL-LLHTTDG 89 (302)
T ss_dssp -SS-EEEEEESSSS-EEEEET-TTEEEE-ESSTTSS-EE-----S-----EEEEEEEET-TEEEEEE-ETTE-EEEESST
T ss_pred CCCceEEEEEecCCEEEEEec-CCEEEE-ECCCCccccccccCCCccceeeEEEEEecC-CceEEEc-CCce-EEEecCC
Confidence 345789999995555555554 454322 22222211111 111 12356777763 3344444 4453 3333344
Q ss_pred Cceeeeec---CCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCee-EEEecccCCceEEEEEcCCCCEEEEEeCCCc
Q 005096 218 NNVKANKS---AHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQE-ERSLTGHGWDVKSVDWHPTKSLLVSGGKDSL 293 (715)
Q Consensus 218 ~~~~~~~~---~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~-~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~ 293 (715)
++.-..+. ........+....++ .+..++..|.|+.=. +.++. ..........+..+..++|+++++++.....
T Consensus 90 G~tW~~v~l~~~lpgs~~~i~~l~~~-~~~l~~~~G~iy~T~-DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~ 167 (302)
T PF14870_consen 90 GKTWERVPLSSKLPGSPFGITALGDG-SAELAGDRGAIYRTT-DGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRGNF 167 (302)
T ss_dssp TSS-EE----TT-SS-EEEEEEEETT-EEEEEETT--EEEES-STTSSEEEEE-S----EEEEEE-TTS-EEEEETTSSE
T ss_pred CCCcEEeecCCCCCCCeeEEEEcCCC-cEEEEcCCCcEEEeC-CCCCCeeEcccCCcceeEeEEECCCCcEEEEECcccE
Confidence 43322221 122333444444444 344444555443321 22222 2223445577889999999998888877666
Q ss_pred EEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEEC-CCCeEEEE----eecCCCCeEEEEEccCCCC
Q 005096 294 VKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDI-RAMKELES----FRGHRKDVTALAWHPFHEE 368 (715)
Q Consensus 294 I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl-~t~~~~~~----~~~h~~~V~~l~~sp~~~~ 368 (715)
+.-||--...-...-+.....|.++.|++++.+.+++ ..|.|++=|. ...+.... +....-.+.+++|.+ ++.
T Consensus 168 ~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~-~~~ 245 (302)
T PF14870_consen 168 YSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRP-PNE 245 (302)
T ss_dssp EEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESS-SS-
T ss_pred EEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccccccccCCcccCceeeEEEEecC-CCC
Confidence 6677754322222222346789999999998866654 8899988872 22222222 112334588999997 566
Q ss_pred EEEEEeCCCcEEEEEcCCCCceEEEee--ccCCCEEEEEEcCCCCEEEEEECCCeEEEE
Q 005096 369 YFVSGSLDGSIFHWLVGHETPQVEIHN--VHDNTVWDLAWHPIGYLLCSGSNDHTTKFW 425 (715)
Q Consensus 369 ~l~sgs~DG~I~iwd~~~~~~~~~~~~--~h~~~V~~l~~spdg~~L~sgs~Dg~I~iW 425 (715)
++++|+ .|.|. ...+.++.-.+... .-...++.+.|..+.+ -.+.+.||.|.-|
T Consensus 246 ~wa~gg-~G~l~-~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~-gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 246 IWAVGG-SGTLL-VSTDGGKTWQKDRVGENVPSNLYRIVFVNPDK-GFVLGQDGVLLRY 301 (302)
T ss_dssp EEEEES-TT-EE-EESSTTSS-EE-GGGTTSSS---EEEEEETTE-EEEE-STTEEEEE
T ss_pred EEEEeC-CccEE-EeCCCCccceECccccCCCCceEEEEEcCCCc-eEEECCCcEEEEe
Confidence 666555 45443 34444444333332 2244688899986644 4445568888766
|
|
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.0006 Score=74.62 Aligned_cols=238 Identities=11% Similarity=0.021 Sum_probs=133.8
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcee-------------------------------------------eee
Q 005096 188 AIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVK-------------------------------------------ANK 224 (715)
Q Consensus 188 ~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~-------------------------------------------~~~ 224 (715)
.|+++.|+.+...|+++...|.|.||.+..++.. ..+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 5788999988888999999999988864321100 001
Q ss_pred cCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEec--c------cCCceEEEEEcC-----CC---CEEEEE
Q 005096 225 SAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLT--G------HGWDVKSVDWHP-----TK---SLLVSG 288 (715)
Q Consensus 225 ~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~--~------~~~~I~si~~sp-----dg---~~L~sg 288 (715)
....+.|++++.+ |-.++++|..+|.+.|.|++....+..-. . ....|+++.|.- |+ -+|++|
T Consensus 83 ~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG 161 (395)
T PF08596_consen 83 DAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG 161 (395)
T ss_dssp ---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred eccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence 2335788899887 55689999999999999998777665421 1 234577887752 33 378899
Q ss_pred eCCCcEEEEECC--C-Ccee----EEeccCCCceEEEE-EcCC--------------------CCEEEEEECCCeEEEEE
Q 005096 289 GKDSLVKLWDAK--S-GREL----CSFHGHKNMVLCVK-WNQN--------------------GNWVLTASKDQIIKLYD 340 (715)
Q Consensus 289 s~Dg~I~iwDl~--s-~~~~----~~~~~~~~~I~sl~-~spd--------------------g~~Lasgs~dg~I~iwD 340 (715)
++.|.+.+|.+. . +.-. .....+.+.|..|. |+.+ -.-+++.+.+..|+|+.
T Consensus 162 Tn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~ 241 (395)
T PF08596_consen 162 TNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFK 241 (395)
T ss_dssp ETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-
T ss_pred eCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEe
Confidence 999999999774 1 2111 11123455555554 3211 12244445578899999
Q ss_pred CCCCeEEEEeecCCCCeEEEEEc----cCCCCEEEEEeCCCcEEEEEcCCCCceEEEeec---cCCCEEEEEEcCCCCEE
Q 005096 341 IRAMKELESFRGHRKDVTALAWH----PFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNV---HDNTVWDLAWHPIGYLL 413 (715)
Q Consensus 341 l~t~~~~~~~~~h~~~V~~l~~s----p~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~---h~~~V~~l~~spdg~~L 413 (715)
.-+.+...+..........+++. ...+..|++-..+|.|++|.+-.-+.+...... ....+...+++.+|..+
T Consensus 242 ~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~Gdi~ 321 (395)
T PF08596_consen 242 PPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISRNGDIF 321 (395)
T ss_dssp TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-TTS-EE
T ss_pred CCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEECCCCCEE
Confidence 98887766555222233334442 125677888899999999999876665554431 11234456778888866
Q ss_pred EEEECCCeEEEEec
Q 005096 414 CSGSNDHTTKFWCR 427 (715)
Q Consensus 414 ~sgs~Dg~I~iWdl 427 (715)
+-.+ ...+.+|.+
T Consensus 322 ~~~g-psE~~l~sv 334 (395)
T PF08596_consen 322 YWTG-PSEIQLFSV 334 (395)
T ss_dssp EE-S-SSEEEEEEE
T ss_pred EEeC-cccEEEEEE
Confidence 6654 445555544
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.0027 Score=69.38 Aligned_cols=89 Identities=13% Similarity=0.292 Sum_probs=59.5
Q ss_pred EEEEcCCCCEEEEEeCCCeEEE---EeCCC-----CceEEEEec---cC--CCEEEEEEcC-----------CCCEEEEE
Q 005096 149 RVLWTPTGRRLITGSQSGEFTL---WNGQS-----FNFEMILQA---HD--HAIRSMVWSH-----------NDNWMVSG 204 (715)
Q Consensus 149 ~l~~spdg~~Latgs~dg~I~I---wd~~~-----~~~~~~l~~---h~--~~V~~l~~sp-----------dg~~L~tg 204 (715)
+++.++++++||.+..+..+.+ |+.+. ........+ ++ +.|+++.|-+ |...|++|
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG 85 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG 85 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence 4678999999999988876665 64311 112222211 11 4677776633 35788999
Q ss_pred eCCCcEEEEeCCCCceeeeecCCCCCeEEEEEec
Q 005096 205 DDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCR 238 (715)
Q Consensus 205 s~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp 238 (715)
..+|.|++|.. ++.++..-..|.+.|..|.+..
T Consensus 86 ~ssG~vrfyte-~G~LL~~Q~~h~~pV~~ik~~~ 118 (415)
T PF14655_consen 86 TSSGYVRFYTE-NGVLLLSQLLHEEPVLKIKCRS 118 (415)
T ss_pred ecccEEEEEec-cchHHHHHhcCccceEEEEecc
Confidence 99999999975 5556555567788888877743
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00037 Score=81.28 Aligned_cols=217 Identities=12% Similarity=0.093 Sum_probs=131.6
Q ss_pred ECCCcEEEEECCCCeeEEEecccCCc-eEEEEEcC-----CCCEEEEEeCCCcEEEEECCCCc-eeEEec----cCCCce
Q 005096 247 SDDTTVKVWDFARCQEERSLTGHGWD-VKSVDWHP-----TKSLLVSGGKDSLVKLWDAKSGR-ELCSFH----GHKNMV 315 (715)
Q Consensus 247 s~Dg~V~iwdl~~~~~~~~l~~~~~~-I~si~~sp-----dg~~L~sgs~Dg~I~iwDl~s~~-~~~~~~----~~~~~I 315 (715)
.....|+-.|+++++.+..+..+... |.+++-.. +..-.++|-.++.|..||.|-.. .+..-. ......
T Consensus 501 ~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~F 580 (794)
T PF08553_consen 501 NNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNF 580 (794)
T ss_pred CCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCc
Confidence 34678999999999999999877654 55554332 12345677788899999998532 222111 234567
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcC--CC------
Q 005096 316 LCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVG--HE------ 387 (715)
Q Consensus 316 ~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~--~~------ 387 (715)
+|++-+.+| +||+|+.+|.||+||--..+....+.+....|..|.++. ++++|++.+. ..|.+++.. .+
T Consensus 581 s~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~-DGkwilaTc~-tyLlLi~t~~~~g~~~g~~ 657 (794)
T PF08553_consen 581 SCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTA-DGKWILATCK-TYLLLIDTLIKDGKNSGKL 657 (794)
T ss_pred eEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecC-CCcEEEEeec-ceEEEEEEeeecCCccCcc
Confidence 888877666 699999999999999533333344557789999999999 6776665553 466666642 10
Q ss_pred ----------C---ceEEEeeccC--------CC--EEEEEEcC--C-CCEEEEEECCCeEEEEecCCCCCccccccccc
Q 005096 388 ----------T---PQVEIHNVHD--------NT--VWDLAWHP--I-GYLLCSGSNDHTTKFWCRNRPGDTARDKFNMG 441 (715)
Q Consensus 388 ----------~---~~~~~~~~h~--------~~--V~~l~~sp--d-g~~L~sgs~Dg~I~iWdl~~~~~~~~~~~~~~ 441 (715)
+ ..+.+...|. .. -+...|+. + ....++++....+.+|++.+-......++.+.
T Consensus 658 GF~~~~~~~~kp~Pr~L~L~pe~~~~~~~~~~~~~~Ft~a~Fnt~~~~~E~~IvtstG~f~v~Wnf~kV~~g~~~~Y~ik 737 (794)
T PF08553_consen 658 GFEKSFGKDKKPQPRRLQLKPEHVAYMQHETGKPISFTPAKFNTGIGKQETSIVTSTGPFVVTWNFKKVKRGKKDPYQIK 737 (794)
T ss_pred ccccccCccCCCCCeEEecCHHHHHHHHhccCCCceeeceEEecCCCCccceEEEeccCEEEEEEHHHHhCCCCCceEEE
Confidence 0 0111111121 11 22344542 1 13344445567899999987666666666554
Q ss_pred CCccccceeeEEeecCCCCccCCCCC
Q 005096 442 QNQGYGEQNAVFAGRMPGNFPLPEGP 467 (715)
Q Consensus 442 ~~~g~~~~~~~~~~~~~~~~~~~~~~ 467 (715)
.... ......|.+..+..+++....
T Consensus 738 ry~~-~V~~dnF~fg~d~~vival~~ 762 (794)
T PF08553_consen 738 RYDE-NVVADNFKFGSDKNVIVALPN 762 (794)
T ss_pred EcCC-ceEEccceeCCCCcEEEEccc
Confidence 4332 334444555555555544443
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.017 Score=67.28 Aligned_cols=284 Identities=12% Similarity=0.122 Sum_probs=157.5
Q ss_pred CCCccEEEEEEcCCC------CEEEEEeCCCeEEEEe-CCCCceEEEE--e--ccCCCEEEEEEcCCCCEEEEEeCCCcE
Q 005096 142 KNRCSINRVLWTPTG------RRLITGSQSGEFTLWN-GQSFNFEMIL--Q--AHDHAIRSMVWSHNDNWMVSGDDGGAI 210 (715)
Q Consensus 142 ~H~~~I~~l~~spdg------~~Latgs~dg~I~Iwd-~~~~~~~~~l--~--~h~~~V~~l~~spdg~~L~tgs~dg~I 210 (715)
.-...|.|++++|-| +++++|..+..+.+.- +.+...+... . .-...|.-.++--|..+|+++..||.+
T Consensus 528 ~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l 607 (1096)
T KOG1897|consen 528 EFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGAL 607 (1096)
T ss_pred eecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceE
Confidence 345689999999742 3788888776655443 3333322222 1 112445555666678899999999998
Q ss_pred EEEeCC--CCceeeee--cCCCCCeEEEEEecCCCEEEEEECC-------------------------------------
Q 005096 211 KYWQNN--MNNVKANK--SAHKESVRDLSFCRTDLKFCSCSDD------------------------------------- 249 (715)
Q Consensus 211 ~iwd~~--~~~~~~~~--~~h~~~I~~l~~spd~~~Las~s~D------------------------------------- 249 (715)
..|.++ ++...... .....++.--.|+..++.-+.|..|
T Consensus 608 ~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~spls~kev~~~c~f~s~a~~d~l 687 (1096)
T KOG1897|consen 608 LYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLVYSPLSLKEVNHMCPFNSDAYPDSL 687 (1096)
T ss_pred EEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEEEeccchHHhhhhcccccccCCceE
Confidence 776543 33222111 1112223222333222222222222
Q ss_pred -----CcEEEEECCCCee--EEEecccCCceEEEEEcCCCCEEEEEeCC--------------CcEEEEECCCCceeEEe
Q 005096 250 -----TTVKVWDFARCQE--ERSLTGHGWDVKSVDWHPTKSLLVSGGKD--------------SLVKLWDAKSGRELCSF 308 (715)
Q Consensus 250 -----g~V~iwdl~~~~~--~~~l~~~~~~I~si~~spdg~~L~sgs~D--------------g~I~iwDl~s~~~~~~~ 308 (715)
+.+++.-++.-.+ ++++. .......+++.+...++++.+.- ..++++|-++-+.+...
T Consensus 688 ~~~~~~~l~i~tid~iqkl~irtvp-l~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~h 766 (1096)
T KOG1897|consen 688 ASANGGALTIGTIDEIQKLHIRTVP-LGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSH 766 (1096)
T ss_pred EEecCCceEEEEecchhhcceeeec-CCCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeec
Confidence 2233333322111 11211 22345566666533344433321 13667776665544433
Q ss_pred cc----CCCceEEEEEcCC-CCEEEEEE----------CCCeEEEEECCCCeEEEEeecC--CCCeEEEEEccCCCCEEE
Q 005096 309 HG----HKNMVLCVKWNQN-GNWVLTAS----------KDQIIKLYDIRAMKELESFRGH--RKDVTALAWHPFHEEYFV 371 (715)
Q Consensus 309 ~~----~~~~I~sl~~spd-g~~Lasgs----------~dg~I~iwDl~t~~~~~~~~~h--~~~V~~l~~sp~~~~~l~ 371 (715)
+- ....|.++.|..| +.++++|+ ..|.|.||.+..+..+.....+ ++.+.++..- ++++||
T Consensus 767 ef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~f--ngkllA 844 (1096)
T KOG1897|consen 767 EFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEF--NGKLLA 844 (1096)
T ss_pred cccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhh--CCeEEE
Confidence 21 1123555668877 67788776 3578888888774444444332 3445554433 677777
Q ss_pred EEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCCCC
Q 005096 372 SGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPG 431 (715)
Q Consensus 372 sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~ 431 (715)
.- +..|++|+..+++.+ ++...+...+..+...-.+..+++|..-+.|.+-..+..+
T Consensus 845 ~I--n~~vrLye~t~~~eL-r~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~e 901 (1096)
T KOG1897|consen 845 GI--NQSVRLYEWTTEREL-RIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDE 901 (1096)
T ss_pred ec--CcEEEEEEcccccee-hhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccC
Confidence 44 458999998776443 4444567788899998899999999998888876654433
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.026 Score=66.66 Aligned_cols=238 Identities=11% Similarity=-0.004 Sum_probs=123.0
Q ss_pred ccEEEEEEcCCCCEEEEEeCC-----CeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCC------CcEEEE
Q 005096 145 CSINRVLWTPTGRRLITGSQS-----GEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDG------GAIKYW 213 (715)
Q Consensus 145 ~~I~~l~~spdg~~Latgs~d-----g~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~d------g~I~iw 213 (715)
..+..+.||+|+++|+.+... ..|++.|+.+++.+..... ..-..++|++|++.|+.+..+ ..|+++
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~--~~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h 204 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLD--NVEPSFVWANDSWTFYYVRKHPVTLLPYQVWRH 204 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCcccc--CcceEEEEeeCCCEEEEEEecCCCCCCCEEEEE
Confidence 457889999999998876432 3588899988764322211 112469999998877655332 357777
Q ss_pred eCCCC--ceeeeecCCCCCeE-EEEEecCCCEEEEEEC---CCcEEEEECC--CCeeEEEecccCCceEEEEEcCCCCEE
Q 005096 214 QNNMN--NVKANKSAHKESVR-DLSFCRTDLKFCSCSD---DTTVKVWDFA--RCQEERSLTGHGWDVKSVDWHPTKSLL 285 (715)
Q Consensus 214 d~~~~--~~~~~~~~h~~~I~-~l~~spd~~~Las~s~---Dg~V~iwdl~--~~~~~~~l~~~~~~I~si~~spdg~~L 285 (715)
++.++ +....+........ .+..+.++++++..+. ++.+.+|+.. ++.....+.........+. +.. ..|
T Consensus 205 ~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~l 282 (686)
T PRK10115 205 TIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HYQ-HRF 282 (686)
T ss_pred ECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eCC-CEE
Confidence 88877 33334433333333 3333447777655443 4578888852 3332222222222222222 222 333
Q ss_pred EEEeCC--C--cEEEEECCC-CceeEEeccC-CCceEEEEEcCCCCEEEEEECCCeEEE--EECCCCeEEEEee-cCCCC
Q 005096 286 VSGGKD--S--LVKLWDAKS-GRELCSFHGH-KNMVLCVKWNQNGNWVLTASKDQIIKL--YDIRAMKELESFR-GHRKD 356 (715)
Q Consensus 286 ~sgs~D--g--~I~iwDl~s-~~~~~~~~~~-~~~I~sl~~spdg~~Lasgs~dg~I~i--wDl~t~~~~~~~~-~h~~~ 356 (715)
+..+.. . .|...++.+ ++....+... ...|..+.++ .+.++++...++.-++ +|+.+. .+..+. .....
T Consensus 283 y~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~~~~~-~~~~l~~~~~~~ 360 (686)
T PRK10115 283 YLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQINRKTR-EVIGIAFDDPAY 360 (686)
T ss_pred EEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEcCCCC-ceEEecCCCCce
Confidence 333322 2 344445552 2222223322 3468888887 3345556666775544 454332 333333 22222
Q ss_pred eEEEEEc--cCCCCEEEEEeC---CCcEEEEEcCCCC
Q 005096 357 VTALAWH--PFHEEYFVSGSL---DGSIFHWLVGHET 388 (715)
Q Consensus 357 V~~l~~s--p~~~~~l~sgs~---DG~I~iwd~~~~~ 388 (715)
+..+.++ .+++.++++.+. -+.|..+|..+..
T Consensus 361 ~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 361 VTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred EeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 3333343 323445554443 3568888876643
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.0081 Score=63.50 Aligned_cols=218 Identities=12% Similarity=0.073 Sum_probs=128.0
Q ss_pred EEEcCCCCEE-EEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecc--
Q 005096 192 MVWSHNDNWM-VSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTG-- 268 (715)
Q Consensus 192 l~~spdg~~L-~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~-- 268 (715)
-.|.++.+.| ++--..+.|.-|+.++++.... .....+.++....++..|+++.. -+++++.+++..+..+..
T Consensus 30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~--~~p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~~~ 105 (307)
T COG3386 30 PVWDPDRGALLWVDILGGRIHRLDPETGKKRVF--PSPGGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLAEPE 105 (307)
T ss_pred ccCcCCCCEEEEEeCCCCeEEEecCCcCceEEE--ECCCCcccceeecCCCeEEEEcc--ccEEEeccCCceeEEecccc
Confidence 3566666644 4445567888888776543332 23344455555555555655543 366677655555333321
Q ss_pred ---cCCceEEEEEcCCCCEEEEEeC-----------CCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECC-
Q 005096 269 ---HGWDVKSVDWHPTKSLLVSGGK-----------DSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKD- 333 (715)
Q Consensus 269 ---~~~~I~si~~spdg~~L~sgs~-----------Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~d- 333 (715)
.....+.+.+.++|.+.++... -|.|+.+|. .+..++.+..+-..-+.|+||||++.|+.+...
T Consensus 106 ~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~ 184 (307)
T COG3386 106 DGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPA 184 (307)
T ss_pred CCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCC
Confidence 1244568888999886665433 133444454 456666665555566789999999888877654
Q ss_pred CeEEEEECCC--Ce----E-EEEeecCCCCeEEEEEccCCCCEEEEEeCCC-cEEEEEcCCCCceEEEeeccCCCEEEEE
Q 005096 334 QIIKLYDIRA--MK----E-LESFRGHRKDVTALAWHPFHEEYFVSGSLDG-SIFHWLVGHETPQVEIHNVHDNTVWDLA 405 (715)
Q Consensus 334 g~I~iwDl~t--~~----~-~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG-~I~iwd~~~~~~~~~~~~~h~~~V~~l~ 405 (715)
+.|..|++.. +. . ...+....+..-.++... ++++.+++..+| .|.+|+-+ ++.+..+.. ....+++++
T Consensus 185 ~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDa-dG~lw~~a~~~g~~v~~~~pd-G~l~~~i~l-P~~~~t~~~ 261 (307)
T COG3386 185 NRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDA-DGNLWVAAVWGGGRVVRFNPD-GKLLGEIKL-PVKRPTNPA 261 (307)
T ss_pred CeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeC-CCCEEEecccCCceEEEECCC-CcEEEEEEC-CCCCCccce
Confidence 7888887752 11 1 122223345556677766 666665555554 89999887 544444443 446788888
Q ss_pred EcC-CCCEEEEEE
Q 005096 406 WHP-IGYLLCSGS 417 (715)
Q Consensus 406 ~sp-dg~~L~sgs 417 (715)
|-- +.+.|++.+
T Consensus 262 FgG~~~~~L~iTs 274 (307)
T COG3386 262 FGGPDLNTLYITS 274 (307)
T ss_pred EeCCCcCEEEEEe
Confidence 864 334444443
|
|
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.0035 Score=61.56 Aligned_cols=214 Identities=10% Similarity=0.074 Sum_probs=121.2
Q ss_pred CEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCC---CEEEEEeCCCcEEEEeCCC--Cceeeee-----cC
Q 005096 157 RRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHND---NWMVSGDDGGAIKYWQNNM--NNVKANK-----SA 226 (715)
Q Consensus 157 ~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg---~~L~tgs~dg~I~iwd~~~--~~~~~~~-----~~ 226 (715)
.+|.+--..|.|.-||.+..+..+.-.. ...+..+.+--.+ .+.+.++..-.|.-||... ..+..++ ..
T Consensus 28 sLl~VDi~ag~v~r~D~~qn~v~ra~ie-~p~~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~d~ 106 (310)
T KOG4499|consen 28 SLLYVDIEAGEVHRYDIEQNKVYRAKIE-GPPSAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQPDR 106 (310)
T ss_pred eEEEEEeccCceehhhhhhhheEEEEEe-cCcceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccCchH
Confidence 3455555677888899887544332221 1223333332222 2333333333344566322 2222221 11
Q ss_pred CCCCeEEEEEecCCCEEEEEECC---------CcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEE-EeCCCcEEE
Q 005096 227 HKESVRDLSFCRTDLKFCSCSDD---------TTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVS-GGKDSLVKL 296 (715)
Q Consensus 227 h~~~I~~l~~spd~~~Las~s~D---------g~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~s-gs~Dg~I~i 296 (715)
.+.+.++-..+|+|++++-.-.| |.++.|-... .+..+...-.--+.++|+.|.+.+.. -+.+-+|.-
T Consensus 107 kknR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h--~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a 184 (310)
T KOG4499|consen 107 KKNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGH--QVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDA 184 (310)
T ss_pred HhcccccCccCCCCceeeeeeccccccccccccEEEEeccCC--CceeeehhccCCccccccccCcEEEEEccCceEEee
Confidence 24566777788999985432222 4455554322 22222222333467899988776554 455666767
Q ss_pred EE--CCCC-----ceeEEeccC----CCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccC
Q 005096 297 WD--AKSG-----RELCSFHGH----KNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPF 365 (715)
Q Consensus 297 wD--l~s~-----~~~~~~~~~----~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~ 365 (715)
|| ..+| +.+..++.. .-.--.+++.-+|++.+++-..++|..+|..+++.+.+++.....|++++|--.
T Consensus 185 ~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGk 264 (310)
T KOG4499|consen 185 YDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGK 264 (310)
T ss_pred eecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCC
Confidence 87 4444 333333321 111223455668888888888999999999999999999999999999999643
Q ss_pred CCCEEEEE
Q 005096 366 HEEYFVSG 373 (715)
Q Consensus 366 ~~~~l~sg 373 (715)
+-+++++.
T Consensus 265 n~d~~yvT 272 (310)
T KOG4499|consen 265 NLDILYVT 272 (310)
T ss_pred CccEEEEE
Confidence 33444443
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.0022 Score=73.94 Aligned_cols=183 Identities=9% Similarity=0.087 Sum_probs=106.2
Q ss_pred CCeEEEEEecCCCEEEEEE------CCC--cEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCC---------
Q 005096 229 ESVRDLSFCRTDLKFCSCS------DDT--TVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKD--------- 291 (715)
Q Consensus 229 ~~I~~l~~spd~~~Las~s------~Dg--~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~D--------- 291 (715)
..+.+.++++|++.++... .|. .|++++... .. ..+.. ....+.-.|++||+.|++..+.
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg-~~-~~lt~-g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGG-VA-VQVLE-GHSLTRPSWSLDADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCC-cc-eeeec-CCCCCCceECCCCCceEEEecCcceEEEecc
Confidence 4678899999999887665 243 455556532 22 33322 2348889999998877777543
Q ss_pred ---CcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEE---EECCCCe-EE---EEeec-CCCCeEEE
Q 005096 292 ---SLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKL---YDIRAMK-EL---ESFRG-HRKDVTAL 360 (715)
Q Consensus 292 ---g~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~i---wDl~t~~-~~---~~~~~-h~~~V~~l 360 (715)
+.|.+.+++.++... .....|..+.||+||+.|+... ++.|+| -....+. .+ ..+.. ....+.++
T Consensus 427 ~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l 502 (591)
T PRK13616 427 PATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSL 502 (591)
T ss_pred CCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccc
Confidence 223333443332221 2345799999999999998876 577777 4444443 11 11222 33346889
Q ss_pred EEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeec--cCCCEEEEEEcCCCCEEEEEECCCeE
Q 005096 361 AWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNV--HDNTVWDLAWHPIGYLLCSGSNDHTT 422 (715)
Q Consensus 361 ~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~--h~~~V~~l~~spdg~~L~sgs~Dg~I 422 (715)
.|.. ++.++ ++..++...+|.+.-.......... ....+..|+-+++ .|+....++.+
T Consensus 503 ~W~~-~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~ 562 (591)
T PRK13616 503 DWRT-GDSLV-VGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--TVYVTDARAVL 562 (591)
T ss_pred eEec-CCEEE-EEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc--eEEEEcCCceE
Confidence 9997 55544 5555555556655433332222121 2446677776653 45555666643
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0013 Score=75.68 Aligned_cols=215 Identities=8% Similarity=0.017 Sum_probs=108.9
Q ss_pred eEEEEeCCCCceEEEEeccCCC-EEEEEEcCCCCEEEEEeCC------CcEEEEeCCCCceeeeecCCCCCeEEEEEecC
Q 005096 167 EFTLWNGQSFNFEMILQAHDHA-IRSMVWSHNDNWMVSGDDG------GAIKYWQNNMNNVKANKSAHKESVRDLSFCRT 239 (715)
Q Consensus 167 ~I~Iwd~~~~~~~~~l~~h~~~-V~~l~~spdg~~L~tgs~d------g~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd 239 (715)
.+..||..+.+....-...... -.+++. -++.++++|+.+ ..+..||..++.-...-.-...........-+
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~~~~a~-l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~ 351 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIINYASAI-VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVID 351 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccceEEEE-ECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEEC
Confidence 5677887775533321111111 112222 256677777753 34677887766432211111111111122236
Q ss_pred CCEEEEEECCC-----cEEEEECCCCeeEE--EecccCCceEEEEEcCCCCEEEEEeCCC--------------------
Q 005096 240 DLKFCSCSDDT-----TVKVWDFARCQEER--SLTGHGWDVKSVDWHPTKSLLVSGGKDS-------------------- 292 (715)
Q Consensus 240 ~~~Las~s~Dg-----~V~iwdl~~~~~~~--~l~~~~~~I~si~~spdg~~L~sgs~Dg-------------------- 292 (715)
++..+.|+.++ +|.+||..+.+-.. .+.........+++ ++++.++|+.++
T Consensus 352 g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~ 429 (557)
T PHA02713 352 DTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVL--DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTH 429 (557)
T ss_pred CEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEE--CCEEEEEeCCCccccccccccccccccccccc
Confidence 67777777653 47889986643221 22211122222333 477777777542
Q ss_pred ---cEEEEECCCCcee--EEeccCCCceEEEEEcCCCCEEEEEECC------CeEEEEECCC---CeEEEEeecCCCCeE
Q 005096 293 ---LVKLWDAKSGREL--CSFHGHKNMVLCVKWNQNGNWVLTASKD------QIIKLYDIRA---MKELESFRGHRKDVT 358 (715)
Q Consensus 293 ---~I~iwDl~s~~~~--~~~~~~~~~I~sl~~spdg~~Lasgs~d------g~I~iwDl~t---~~~~~~~~~h~~~V~ 358 (715)
.+..||.++.+-. ..+....... +++ .-++++.++|+.+ ..|..||.++ ++.+..+........
T Consensus 430 ~~~~ve~YDP~td~W~~v~~m~~~r~~~-~~~-~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~ 507 (557)
T PHA02713 430 SSNKVIRYDTVNNIWETLPNFWTGTIRP-GVV-SHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALH 507 (557)
T ss_pred ccceEEEECCCCCeEeecCCCCcccccC-cEE-EECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccce
Confidence 4677887765322 2221111111 122 2246666666643 2467899876 344444443333333
Q ss_pred EEEEccCCCCEEEEEeCCC--cEEEEEcCCCCc
Q 005096 359 ALAWHPFHEEYFVSGSLDG--SIFHWLVGHETP 389 (715)
Q Consensus 359 ~l~~sp~~~~~l~sgs~DG--~I~iwd~~~~~~ 389 (715)
.+.+ ++.++++|+.|+ .+..||..+.+.
T Consensus 508 ~~~~---~~~iyv~Gg~~~~~~~e~yd~~~~~W 537 (557)
T PHA02713 508 TILH---DNTIMMLHCYESYMLQDTFNVYTYEW 537 (557)
T ss_pred eEEE---CCEEEEEeeecceeehhhcCcccccc
Confidence 3333 788999999888 677777766543
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.035 Score=65.59 Aligned_cols=237 Identities=13% Similarity=0.048 Sum_probs=123.0
Q ss_pred CCEEEEEEcCCCCEEEEEeC-----CCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECC------CcEEEE
Q 005096 187 HAIRSMVWSHNDNWMVSGDD-----GGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDD------TTVKVW 255 (715)
Q Consensus 187 ~~V~~l~~spdg~~L~tgs~-----dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~D------g~V~iw 255 (715)
-.+..+.|++|+++|+.+.+ .-.|++.|+.++..+...... .-..++|++|++.|+....+ ..|+++
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~--~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h 204 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDN--VEPSFVWANDSWTFYYVRKHPVTLLPYQVWRH 204 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccC--cceEEEEeeCCCEEEEEEecCCCCCCCEEEEE
Confidence 34667889999998876432 235788888877533222111 11459999998876655432 368888
Q ss_pred ECCCC--eeEEEecccCCceE-EEEEcCCCCEEEEEeC---CCcEEEEECC--CCceeEEeccCCCceEEEEEcCCCCEE
Q 005096 256 DFARC--QEERSLTGHGWDVK-SVDWHPTKSLLVSGGK---DSLVKLWDAK--SGRELCSFHGHKNMVLCVKWNQNGNWV 327 (715)
Q Consensus 256 dl~~~--~~~~~l~~~~~~I~-si~~spdg~~L~sgs~---Dg~I~iwDl~--s~~~~~~~~~~~~~I~sl~~spdg~~L 327 (715)
++.+. +....+........ .+..+.|++++++.+. ++.+.+|+.. +++....+.........+. +.. +.|
T Consensus 205 ~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~l 282 (686)
T PRK10115 205 TIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HYQ-HRF 282 (686)
T ss_pred ECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eCC-CEE
Confidence 88877 33444443333333 3344547776665443 3578888853 3332222221222222222 222 334
Q ss_pred EEEECC----CeEEEEECCCCeEEEEeecC--CCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCC-ceEEEeeccCCC
Q 005096 328 LTASKD----QIIKLYDIRAMKELESFRGH--RKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHET-PQVEIHNVHDNT 400 (715)
Q Consensus 328 asgs~d----g~I~iwDl~t~~~~~~~~~h--~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~-~~~~~~~~h~~~ 400 (715)
+..+.. ..|...++.+......+..+ ...|..+.+. .+.++++...+|.-+++-++... ....+.......
T Consensus 283 y~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~--~~~l~~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~~ 360 (686)
T PRK10115 283 YLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF--TDWLVVEERQRGLTSLRQINRKTREVIGIAFDDPAY 360 (686)
T ss_pred EEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE--CCEEEEEEEeCCEEEEEEEcCCCCceEEecCCCCce
Confidence 433322 24444455421222333333 2468888886 45777788888876666554322 222222111223
Q ss_pred EEEEEEc--CC-CCEEEEEEC---CCeEEEEecCC
Q 005096 401 VWDLAWH--PI-GYLLCSGSN---DHTTKFWCRNR 429 (715)
Q Consensus 401 V~~l~~s--pd-g~~L~sgs~---Dg~I~iWdl~~ 429 (715)
+..+.++ .+ +.++++.++ -+.|..||+..
T Consensus 361 ~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~ 395 (686)
T PRK10115 361 VTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDT 395 (686)
T ss_pred EeeecccCCCCCceEEEEEecCCCCCEEEEEECCC
Confidence 3334444 33 334444433 35666676654
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0095 Score=60.71 Aligned_cols=180 Identities=12% Similarity=0.058 Sum_probs=116.2
Q ss_pred EEEEEEcCCCCEEEEEeCCC--cEEEEeCCCCceeeeecCCC-CCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEE
Q 005096 189 IRSMVWSHNDNWMVSGDDGG--AIKYWQNNMNNVKANKSAHK-ESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERS 265 (715)
Q Consensus 189 V~~l~~spdg~~L~tgs~dg--~I~iwd~~~~~~~~~~~~h~-~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~ 265 (715)
...+.|..++.++-+.+.-| .|+.+|+++++......... ---..|+.. +++.+...=.++...+||.++.+.+..
T Consensus 47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~~f~yd~~tl~~~~~ 125 (264)
T PF05096_consen 47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEGTGFVYDPNTLKKIGT 125 (264)
T ss_dssp EEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSSEEEEEETTTTEEEEE
T ss_pred CccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCCeEEEEccccceEEEE
Confidence 44677766777777777665 78999999998765543322 122334443 333334444588999999999988888
Q ss_pred ecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccC-----CCceEEEEEcCCCCEEEEEECCCeEEEEE
Q 005096 266 LTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGH-----KNMVLCVKWNQNGNWVLTASKDQIIKLYD 340 (715)
Q Consensus 266 l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~-----~~~I~sl~~spdg~~Lasgs~dg~I~iwD 340 (715)
+.- ...=+.++. |++.|+.+.....|+++|.++.+.+.++.-. -..++.+.|- +|...|=.-....|...|
T Consensus 126 ~~y-~~EGWGLt~--dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~Id 201 (264)
T PF05096_consen 126 FPY-PGEGWGLTS--DGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRID 201 (264)
T ss_dssp EE--SSS--EEEE--CSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEEE
T ss_pred Eec-CCcceEEEc--CCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEEe
Confidence 763 345566663 5777777777788999999887776665422 1246667776 666666566677888899
Q ss_pred CCCCeEEEEeec---------------CCCCeEEEEEccCCCCEEEEE
Q 005096 341 IRAMKELESFRG---------------HRKDVTALAWHPFHEEYFVSG 373 (715)
Q Consensus 341 l~t~~~~~~~~~---------------h~~~V~~l~~sp~~~~~l~sg 373 (715)
..+|+.+..+.. ...-.+.|++.+..+++++||
T Consensus 202 p~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 202 PETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp TTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred CCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 999998876631 124578999999777777776
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.0076 Score=61.48 Aligned_cols=168 Identities=7% Similarity=0.078 Sum_probs=114.7
Q ss_pred EeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeecC-CCCCeEEEEEecCCCEEEEEECCCcEEEEECCCC
Q 005096 182 LQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSA-HKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARC 260 (715)
Q Consensus 182 l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~~-h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~ 260 (715)
+.+-...|.++.|+++.+.|++..+...-.||-...++++.++.. .-..-..|.+..++.++++--.+..+.++.++..
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence 344456699999999999999888888888887777887776632 1234456788888887777777888888877654
Q ss_pred eeEEEe----------cccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCcee---EEecc-------CCCceEEEEE
Q 005096 261 QEERSL----------TGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGREL---CSFHG-------HKNMVLCVKW 320 (715)
Q Consensus 261 ~~~~~l----------~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~---~~~~~-------~~~~I~sl~~ 320 (715)
..+..+ ...+.....++|++.+..|+++-+-.-+.||.+...... ..... .-..|.++.|
T Consensus 161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~ 240 (316)
T COG3204 161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEF 240 (316)
T ss_pred ccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecccccee
Confidence 332221 112556789999999999999888787888776533211 11111 1234778888
Q ss_pred cC-CCCEEEEEECCCeEEEEECCCCeEEEEe
Q 005096 321 NQ-NGNWVLTASKDQIIKLYDIRAMKELESF 350 (715)
Q Consensus 321 sp-dg~~Lasgs~dg~I~iwDl~t~~~~~~~ 350 (715)
++ .+.+|+.+.+++.|.-.|.+ |+.+..+
T Consensus 241 ~~~~~~LLVLS~ESr~l~Evd~~-G~~~~~l 270 (316)
T COG3204 241 NAITNSLLVLSDESRRLLEVDLS-GEVIELL 270 (316)
T ss_pred cCCCCcEEEEecCCceEEEEecC-CCeeeeE
Confidence 87 45666677778888888876 4444443
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0021 Score=74.06 Aligned_cols=183 Identities=16% Similarity=0.210 Sum_probs=106.1
Q ss_pred ccEEEEEEcCCCCEEEEEe------CCC--eEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCC---------
Q 005096 145 CSINRVLWTPTGRRLITGS------QSG--EFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDG--------- 207 (715)
Q Consensus 145 ~~I~~l~~spdg~~Latgs------~dg--~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~d--------- 207 (715)
..|.+.++++||+.++... .|. .|.+++... .....+.+ ...+.-.|++|++.|++....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg-~~~~lt~g--~~~t~PsWspDG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGG-VAVQVLEG--HSLTRPSWSLDADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCC-cceeeecC--CCCCCceECCCCCceEEEecCcceEEEecc
Confidence 4688999999999988765 243 455556432 22222232 247888999998877766432
Q ss_pred ---CcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEE---EECCCCee-E---EEec-ccCCceEEE
Q 005096 208 ---GAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKV---WDFARCQE-E---RSLT-GHGWDVKSV 276 (715)
Q Consensus 208 ---g~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~i---wdl~~~~~-~---~~l~-~~~~~I~si 276 (715)
+.+.+.+++.++... .....|..+.|++||..|+... ++.|++ -....+.. + ..+. .....+.++
T Consensus 427 ~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l 502 (591)
T PRK13616 427 PATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSL 502 (591)
T ss_pred CCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccc
Confidence 223333443333322 3356799999999999988766 467777 44344431 1 1122 233346889
Q ss_pred EEcCCCCEEEEEeCCCcEEEE--ECCCCceeEEecc--CCCceEEEEEcCCCCEEEEEECCCeEEE
Q 005096 277 DWHPTKSLLVSGGKDSLVKLW--DAKSGRELCSFHG--HKNMVLCVKWNQNGNWVLTASKDQIIKL 338 (715)
Q Consensus 277 ~~spdg~~L~sgs~Dg~I~iw--Dl~s~~~~~~~~~--~~~~I~sl~~spdg~~Lasgs~dg~I~i 338 (715)
+|..++.++ ++..++...+| ++.. .....+.. ....+.+|+=++ ..|++...++.+.+
T Consensus 503 ~W~~~~~L~-V~~~~~~~~v~~v~vDG-~~~~~~~~~n~~~~v~~vaa~~--~~iyv~~~~g~~~l 564 (591)
T PRK13616 503 DWRTGDSLV-VGRSDPEHPVWYVNLDG-SNSDALPSRNLSAPVVAVAASP--STVYVTDARAVLQL 564 (591)
T ss_pred eEecCCEEE-EEecCCCCceEEEecCC-ccccccCCCCccCceEEEecCC--ceEEEEcCCceEEe
Confidence 999988854 55555544445 4442 22222122 244566666654 34556666664444
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.024 Score=59.70 Aligned_cols=227 Identities=11% Similarity=0.110 Sum_probs=109.5
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEe---ccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC-cee
Q 005096 146 SINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQ---AHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN-NVK 221 (715)
Q Consensus 146 ~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~---~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~-~~~ 221 (715)
.+++|.|..+ ..++ ++..+ +.+...+.++.-..+. .-.+....+....++..++ ++..|.|..= .+.+ .-.
T Consensus 63 ~l~~I~f~~~-~g~i-vG~~g-~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l-~~~~G~iy~T-~DgG~tW~ 137 (302)
T PF14870_consen 63 HLNSISFDGN-EGWI-VGEPG-LLLHTTDGGKTWERVPLSSKLPGSPFGITALGDGSAEL-AGDRGAIYRT-TDGGKTWQ 137 (302)
T ss_dssp EEEEEEEETT-EEEE-EEETT-EEEEESSTTSS-EE----TT-SS-EEEEEEEETTEEEE-EETT--EEEE-SSTTSSEE
T ss_pred eEEEEEecCC-ceEE-EcCCc-eEEEecCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEE-EcCCCcEEEe-CCCCCCee
Confidence 4677888643 3344 44455 4444434333322221 2233444444444443333 3444554332 2222 223
Q ss_pred eeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEEC-C
Q 005096 222 ANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDA-K 300 (715)
Q Consensus 222 ~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl-~ 300 (715)
.........+..+..++|+++++++.....+.-||-....-...-......|.++.|.+++.+.+++ ..|.|++=|. .
T Consensus 138 ~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~ 216 (302)
T PF14870_consen 138 AVVSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPD 216 (302)
T ss_dssp EEE-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TT
T ss_pred EcccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCC
Confidence 3334556788899889999988888776667788864322222333356789999999998765544 8888888772 2
Q ss_pred CCceeEE----eccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEee---cCCCCeEEEEEccCCCCEEEEE
Q 005096 301 SGRELCS----FHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFR---GHRKDVTALAWHPFHEEYFVSG 373 (715)
Q Consensus 301 s~~~~~~----~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~---~h~~~V~~l~~sp~~~~~l~sg 373 (715)
..+.... +......+..++|.+++...++|+ .|.| +...+.++.-...+ .-...++.|.|.. . +.-.+.
T Consensus 217 ~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~-~-~~gf~l 292 (302)
T PF14870_consen 217 DGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVN-P-DKGFVL 292 (302)
T ss_dssp EEEEE---B-TTSS--S-EEEEEESSSS-EEEEES-TT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEE-T-TEEEEE
T ss_pred CccccccccCCcccCceeeEEEEecCCCCEEEEeC-CccE-EEeCCCCccceECccccCCCCceEEEEEcC-C-CceEEE
Confidence 2221111 112233488999998887777665 5544 34445555433332 3456788888875 3 344444
Q ss_pred eCCCcEEEE
Q 005096 374 SLDGSIFHW 382 (715)
Q Consensus 374 s~DG~I~iw 382 (715)
+.+|.|.-|
T Consensus 293 G~~G~ll~~ 301 (302)
T PF14870_consen 293 GQDGVLLRY 301 (302)
T ss_dssp -STTEEEEE
T ss_pred CCCcEEEEe
Confidence 668887665
|
|
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.043 Score=59.13 Aligned_cols=271 Identities=8% Similarity=0.055 Sum_probs=130.8
Q ss_pred CccEEEEEEcCCCCEEEEEeCCCeEEEE-e-CCCCceEEE-EeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCce
Q 005096 144 RCSINRVLWTPTGRRLITGSQSGEFTLW-N-GQSFNFEMI-LQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNV 220 (715)
Q Consensus 144 ~~~I~~l~~spdg~~Latgs~dg~I~Iw-d-~~~~~~~~~-l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~ 220 (715)
...+++|+|..+.+-+++|. +|.|..= | -++.+.... +......+.++.|..+ +.+++ +..+.|..- .+.++.
T Consensus 45 ~~~l~~v~F~d~~~g~avG~-~G~il~T~DgG~tW~~~~~~~~~~~~~l~~v~~~~~-~~~~~-G~~g~i~~S-~DgG~t 120 (334)
T PRK13684 45 EANLLDIAFTDPNHGWLVGS-NRTLLETNDGGETWEERSLDLPEENFRLISISFKGD-EGWIV-GQPSLLLHT-TDGGKN 120 (334)
T ss_pred CCceEEEEEeCCCcEEEEEC-CCEEEEEcCCCCCceECccCCcccccceeeeEEcCC-cEEEe-CCCceEEEE-CCCCCC
Confidence 55789999986666566664 4543332 2 112222111 1012234677877643 34444 444543322 122222
Q ss_pred eeeec---CCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEe-cccCCceEEEEEcCCCCEEEEEeCCCcEEE
Q 005096 221 KANKS---AHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSL-TGHGWDVKSVDWHPTKSLLVSGGKDSLVKL 296 (715)
Q Consensus 221 ~~~~~---~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l-~~~~~~I~si~~spdg~~L~sgs~Dg~I~i 296 (715)
...+. ........+....++. +..++..|.|..=+ +.++.-..+ ......+.++.+.+++.+++++ ..|.+..
T Consensus 121 W~~~~~~~~~~~~~~~i~~~~~~~-~~~~g~~G~i~~S~-DgG~tW~~~~~~~~g~~~~i~~~~~g~~v~~g-~~G~i~~ 197 (334)
T PRK13684 121 WTRIPLSEKLPGSPYLITALGPGT-AEMATNVGAIYRTT-DGGKNWEALVEDAAGVVRNLRRSPDGKYVAVS-SRGNFYS 197 (334)
T ss_pred CeEccCCcCCCCCceEEEEECCCc-ceeeeccceEEEEC-CCCCCceeCcCCCcceEEEEEECCCCeEEEEe-CCceEEE
Confidence 11111 0111222222222222 33334444443222 122222211 2234578899999987666555 4465543
Q ss_pred -EECCCCceeEE-eccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeec----CCCCeEEEEEccCCCCEE
Q 005096 297 -WDAKSGRELCS-FHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRG----HRKDVTALAWHPFHEEYF 370 (715)
Q Consensus 297 -wDl~s~~~~~~-~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~----h~~~V~~l~~sp~~~~~l 370 (715)
+|- .++.-.. .......++++.+.++++.++++ ..|.+++-+.+.++.-..... ....+.++.+.+ ++.++
T Consensus 198 s~~~-gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~-~~~~~ 274 (334)
T PRK13684 198 TWEP-GQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRT-PGEIW 274 (334)
T ss_pred EcCC-CCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCccccccCCccccccceeeEEEcC-CCCEE
Confidence 222 2222222 22345678999999998877765 467665433343433222221 224578888887 55554
Q ss_pred EEEeCCCcEEEEEcCCCCceEEEe--eccCCCEEEEEEcCCCCEEEEEECCCeEEEEec
Q 005096 371 VSGSLDGSIFHWLVGHETPQVEIH--NVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCR 427 (715)
Q Consensus 371 ~sgs~DG~I~iwd~~~~~~~~~~~--~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl 427 (715)
+ ++.+|.|.. ..+.++.-.... ..-....+.+.|..+++.++ .+..|.|..|+=
T Consensus 275 ~-~G~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~G~il~~~~ 330 (334)
T PRK13684 275 A-GGGNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV-LGQRGVLLRYVG 330 (334)
T ss_pred E-EcCCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE-ECCCceEEEecC
Confidence 4 455676543 333333222221 11223577888876666544 566898888764
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.02 Score=57.97 Aligned_cols=235 Identities=11% Similarity=0.054 Sum_probs=138.6
Q ss_pred EEEEEEcCCC-CEEEEEeCCCc-EEEEeCCCCceeeeecCCCCC--eEEEEEecCCCEEEEEECC-----CcEEEEECCC
Q 005096 189 IRSMVWSHND-NWMVSGDDGGA-IKYWQNNMNNVKANKSAHKES--VRDLSFCRTDLKFCSCSDD-----TTVKVWDFAR 259 (715)
Q Consensus 189 V~~l~~spdg-~~L~tgs~dg~-I~iwd~~~~~~~~~~~~h~~~--I~~l~~spd~~~Las~s~D-----g~V~iwdl~~ 259 (715)
...|+|+|.. .-++.+-.-|+ ..++|.+......++...++. .-.=.|++|+.+|+..-.| |.|-|||.+.
T Consensus 70 ~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~ 149 (366)
T COG3490 70 GHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDARE 149 (366)
T ss_pred cCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEeccc
Confidence 3456777654 34455555554 467787776655444332221 1223689999999876554 7799999864
Q ss_pred -CeeEEEecccCCceEEEEEcCCCCEEEEEeC------------------CCcEEEEECCCCceeEEec----cCCCceE
Q 005096 260 -CQEERSLTGHGWDVKSVDWHPTKSLLVSGGK------------------DSLVKLWDAKSGRELCSFH----GHKNMVL 316 (715)
Q Consensus 260 -~~~~~~l~~~~~~I~si~~spdg~~L~sgs~------------------Dg~I~iwDl~s~~~~~~~~----~~~~~I~ 316 (715)
...+..+..|.-.-..+.|..||++|+++.. .-.+.+.|..+++.+.+.. .+...|.
T Consensus 150 ~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiR 229 (366)
T COG3490 150 GFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIR 229 (366)
T ss_pred ccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhccee
Confidence 3456677778877889999999998887642 0124445555555443322 2345688
Q ss_pred EEEEcCCCCEEEEEECCC-----eEEEEECCCCeEEEEeec-------CCCCeEEEEEccCCCCEEEEEeCCCcEEEEEc
Q 005096 317 CVKWNQNGNWVLTASKDQ-----IIKLYDIRAMKELESFRG-------HRKDVTALAWHPFHEEYFVSGSLDGSIFHWLV 384 (715)
Q Consensus 317 sl~~spdg~~Lasgs~dg-----~I~iwDl~t~~~~~~~~~-------h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~ 384 (715)
.++...||..++.+-..| --.|=-.+.++.+.-+.. ....|-+|+.+.+++.+.+|.-..+...+||.
T Consensus 230 Hld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da 309 (366)
T COG3490 230 HLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDA 309 (366)
T ss_pred eeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEc
Confidence 888888887655443222 111112233444443332 23457788888744444445445556889999
Q ss_pred CCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecC
Q 005096 385 GHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRN 428 (715)
Q Consensus 385 ~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~ 428 (715)
.++..+...... .+..++- ...-+++.+.+|.|.+++..
T Consensus 310 ~tG~vv~~a~l~---daaGva~--~~~gf~vssg~G~~~~~s~~ 348 (366)
T COG3490 310 ATGAVVSEAALP---DAAGVAA--AKGGFAVSSGQGRIIFYSRA 348 (366)
T ss_pred CCCcEEeccccc---cccccee--ccCceEEecCCceEEecccc
Confidence 888654332211 2223333 33346677778999988553
|
|
| >COG5276 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.069 Score=54.48 Aligned_cols=195 Identities=8% Similarity=0.013 Sum_probs=119.9
Q ss_pred cCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCe---
Q 005096 185 HDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQ--- 261 (715)
Q Consensus 185 h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~--- 261 (715)
-.+.+..+.++ +++.+.+..+.-++|.|+.+-+.-..+......=..-.|.-.|++..++..|.-+.+.|+.+..
T Consensus 85 ~~~l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vsGn~aYVadlddgfLivdvsdpssP~ 162 (370)
T COG5276 85 ARDLFADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVSGNYAYVADLDDGFLIVDVSDPSSPQ 162 (370)
T ss_pred hhhhhheeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEecCCEEEEeeccCcEEEEECCCCCCce
Confidence 34566777776 5677788888889999998764433322211111223344468898888877778889986543
Q ss_pred eEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEe--ccCCCceEEEEEcCCCCEEEEEECCCeEEEE
Q 005096 262 EERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSF--HGHKNMVLCVKWNQNGNWVLTASKDQIIKLY 339 (715)
Q Consensus 262 ~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~--~~~~~~I~sl~~spdg~~Lasgs~dg~I~iw 339 (715)
....+.........++++ |++-..+..|+-+.|.|+.+...-..+ ......+.++..+++..+++.. +--+.+-
T Consensus 163 lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy--~egvliv 238 (370)
T COG5276 163 LAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVY--DEGVLIV 238 (370)
T ss_pred eeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEc--ccceEEE
Confidence 333444444555678887 888888889999999999865432222 1122367888888666555554 3446677
Q ss_pred ECCCCeEEEEeecC-CCC---eEEEEEccCCCCEEEEEeCCCcEEEEEcCCCC
Q 005096 340 DIRAMKELESFRGH-RKD---VTALAWHPFHEEYFVSGSLDGSIFHWLVGHET 388 (715)
Q Consensus 340 Dl~t~~~~~~~~~h-~~~---V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~ 388 (715)
|..+.+....+... ... ++.+.. .+++......+.-+-+.|+.+..
T Consensus 239 d~s~~ssp~~~gsyet~~p~~~s~v~V---s~~~~Yvadga~gl~~idisnp~ 288 (370)
T COG5276 239 DVSGPSSPTVFGSYETSNPVSISTVPV---SGEYAYVADGAKGLPIIDISNPP 288 (370)
T ss_pred ecCCCCCceEeeccccCCcccccceec---ccceeeeeccccCceeEeccCCC
Confidence 77766544443321 122 222333 45666666666677777776544
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.083 Score=57.27 Aligned_cols=221 Identities=10% Similarity=0.043 Sum_probs=106.0
Q ss_pred CCCEEEEEe-CCCcEEEEeCCCC----ceeeeecC---CC----CCeEEEEEecCCCEEEEEEC------CCcEEEEECC
Q 005096 197 NDNWMVSGD-DGGAIKYWQNNMN----NVKANKSA---HK----ESVRDLSFCRTDLKFCSCSD------DTTVKVWDFA 258 (715)
Q Consensus 197 dg~~L~tgs-~dg~I~iwd~~~~----~~~~~~~~---h~----~~I~~l~~spd~~~Las~s~------Dg~V~iwdl~ 258 (715)
+.++|++.+ .++.|+|+|+.+. ++.+.+.. +. ..-..+...++++.++++-. -|.+.++|-+
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 356777665 6789999998753 33333321 11 11223334468888877532 2458888888
Q ss_pred CCeeEEEecccC---CceEEEEEcCCCCEEEEEeC--------------------CCcEEEEECCCCceeEEeccCC--C
Q 005096 259 RCQEERSLTGHG---WDVKSVDWHPTKSLLVSGGK--------------------DSLVKLWDAKSGRELCSFHGHK--N 313 (715)
Q Consensus 259 ~~~~~~~l~~~~---~~I~si~~spdg~~L~sgs~--------------------Dg~I~iwDl~s~~~~~~~~~~~--~ 313 (715)
+.+.+....... ..-..+-|.+..+.+++... ..+|.+||+++.+.+.++.-.. .
T Consensus 166 tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~ 245 (461)
T PF05694_consen 166 TFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQ 245 (461)
T ss_dssp T--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEE
T ss_pred cccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCC
Confidence 777776665432 23457788888888887642 3579999999999998887433 2
Q ss_pred ceEEEEEcC--CCCEEEEE-ECCCeEEEEEC-CCCeE----EEEeec-----C------------CCCeEEEEEccCCCC
Q 005096 314 MVLCVKWNQ--NGNWVLTA-SKDQIIKLYDI-RAMKE----LESFRG-----H------------RKDVTALAWHPFHEE 368 (715)
Q Consensus 314 ~I~sl~~sp--dg~~Lasg-s~dg~I~iwDl-~t~~~----~~~~~~-----h------------~~~V~~l~~sp~~~~ 368 (715)
....|.|.. +..+=+++ ....+|.+|-- +.++- +..+.. . ..-|+.|.+|-++..
T Consensus 246 ~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrf 325 (461)
T PF05694_consen 246 MPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRF 325 (461)
T ss_dssp EEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-E
T ss_pred ceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCE
Confidence 355677654 44443333 34445555433 33321 222211 1 244799999995555
Q ss_pred EEEEEeCCCcEEEEEcCCCCceEEEeecc------------------CCCEEEEEEcCCCCEEEEEE
Q 005096 369 YFVSGSLDGSIFHWLVGHETPQVEIHNVH------------------DNTVWDLAWHPIGYLLCSGS 417 (715)
Q Consensus 369 ~l~sgs~DG~I~iwd~~~~~~~~~~~~~h------------------~~~V~~l~~spdg~~L~sgs 417 (715)
+.+++-.+|.|+.||+........+-... .+...-+..|-||+.|+..+
T Consensus 326 LYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 326 LYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp EEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred EEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence 66667789999999998765543332110 12236678888988877664
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.048 Score=55.64 Aligned_cols=185 Identities=6% Similarity=0.010 Sum_probs=120.2
Q ss_pred CCCccEEEEEEcCCCCEEEEEeCCC--eEEEEeCCCCceEEEEeccCC-CEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 005096 142 KNRCSINRVLWTPTGRRLITGSQSG--EFTLWNGQSFNFEMILQAHDH-AIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN 218 (715)
Q Consensus 142 ~H~~~I~~l~~spdg~~Latgs~dg--~I~Iwd~~~~~~~~~l~~h~~-~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~ 218 (715)
....-.-.+.|..+|.++-+.+.-| .|+.+|+++++.......... --..|+.. +++++...-.++...+||.++.
T Consensus 42 d~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~~f~yd~~tl 120 (264)
T PF05096_consen 42 DPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEGTGFVYDPNTL 120 (264)
T ss_dssp -TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSSEEEEEETTTT
T ss_pred CCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCCeEEEEccccc
Confidence 3344455677777787777777665 689999999988766554321 12234443 3455556678899999999988
Q ss_pred ceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEeccc-----CCceEEEEEcCCCCEEEEEeCCCc
Q 005096 219 NVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGH-----GWDVKSVDWHPTKSLLVSGGKDSL 293 (715)
Q Consensus 219 ~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~-----~~~I~si~~spdg~~L~sgs~Dg~ 293 (715)
+.+..+... ..=+.|+ .|++.|+.......|+++|-++.+..+.+... -..++.+.|. +|.+.|=.-....
T Consensus 121 ~~~~~~~y~-~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~ 196 (264)
T PF05096_consen 121 KKIGTFPYP-GEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDR 196 (264)
T ss_dssp EEEEEEE-S-SS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSE
T ss_pred eEEEEEecC-CcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCe
Confidence 877776443 4456666 47778888877889999999888777766532 2246677776 5666666667778
Q ss_pred EEEEECCCCceeEEecc---------------CCCceEEEEEcCCCCEEEEEE
Q 005096 294 VKLWDAKSGRELCSFHG---------------HKNMVLCVKWNQNGNWVLTAS 331 (715)
Q Consensus 294 I~iwDl~s~~~~~~~~~---------------~~~~I~sl~~spdg~~Lasgs 331 (715)
|...|..+|+.+..+.. ..+-.+.|+|.++.+.|++.+
T Consensus 197 I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 197 IVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred EEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 88999999988776631 134588999998776666555
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.018 Score=58.24 Aligned_cols=232 Identities=11% Similarity=0.107 Sum_probs=140.1
Q ss_pred EEEEEEcCCC-CEEEEEeCCCe-EEEEeCCCCceEEEEeccCCC--EEEEEEcCCCCEEEEEeCC-----CcEEEEeCCC
Q 005096 147 INRVLWTPTG-RRLITGSQSGE-FTLWNGQSFNFEMILQAHDHA--IRSMVWSHNDNWMVSGDDG-----GAIKYWQNNM 217 (715)
Q Consensus 147 I~~l~~spdg-~~Latgs~dg~-I~Iwd~~~~~~~~~l~~h~~~--V~~l~~spdg~~L~tgs~d-----g~I~iwd~~~ 217 (715)
-..|+|+|.. +-++.+-.-|+ ..++|........++...++. .-.=.||+||.+|+..-+| |.|-|||...
T Consensus 70 ~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~ 149 (366)
T COG3490 70 GHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDARE 149 (366)
T ss_pred cCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEeccc
Confidence 3457788754 34666666665 568898887766655443322 1234799999999876444 7899999875
Q ss_pred C-ceeeeecCCCCCeEEEEEecCCCEEEEEECC------------------CcEEEEECCCCeeEEEe--c--ccCCceE
Q 005096 218 N-NVKANKSAHKESVRDLSFCRTDLKFCSCSDD------------------TTVKVWDFARCQEERSL--T--GHGWDVK 274 (715)
Q Consensus 218 ~-~~~~~~~~h~~~I~~l~~spd~~~Las~s~D------------------g~V~iwdl~~~~~~~~l--~--~~~~~I~ 274 (715)
+ ..+..+..|.-.-..+.|..|++.|+.+... -++.+.|..++..+.+. . .+...|.
T Consensus 150 ~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiR 229 (366)
T COG3490 150 GFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIR 229 (366)
T ss_pred ccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhccee
Confidence 4 4455666777777889999999998876431 11333443344333222 1 2345688
Q ss_pred EEEEcCCCCEEEEEeCCCc-----EEEEECCCCceeEEec-------cCCCceEEEEEcCCCCEEEEEE-CCCeEEEEEC
Q 005096 275 SVDWHPTKSLLVSGGKDSL-----VKLWDAKSGRELCSFH-------GHKNMVLCVKWNQNGNWVLTAS-KDQIIKLYDI 341 (715)
Q Consensus 275 si~~spdg~~L~sgs~Dg~-----I~iwDl~s~~~~~~~~-------~~~~~I~sl~~spdg~~Lasgs-~dg~I~iwDl 341 (715)
.++...||..++.+-..|- -.+=-.+.++.+.-+. ...+.|-+|+.+.+..+++..+ ..+...+||.
T Consensus 230 Hld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da 309 (366)
T COG3490 230 HLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDA 309 (366)
T ss_pred eeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEc
Confidence 8888888876554433221 1111122333333332 2345678888887666666555 5567889999
Q ss_pred CCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEE
Q 005096 342 RAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWL 383 (715)
Q Consensus 342 ~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd 383 (715)
.++..+......+ +..++. ...-|++.+.+|.|+++.
T Consensus 310 ~tG~vv~~a~l~d--aaGva~---~~~gf~vssg~G~~~~~s 346 (366)
T COG3490 310 ATGAVVSEAALPD--AAGVAA---AKGGFAVSSGQGRIIFYS 346 (366)
T ss_pred CCCcEEecccccc--ccccee---ccCceEEecCCceEEecc
Confidence 9998876543222 222222 234455666788888774
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.055 Score=58.64 Aligned_cols=189 Identities=11% Similarity=0.139 Sum_probs=93.6
Q ss_pred CCCEEEEEe-CCCeEEEEeCCC----CceEEEEec---cC----CCEEEEEEcCCCCEEEEE--eCC----CcEEEEeCC
Q 005096 155 TGRRLITGS-QSGEFTLWNGQS----FNFEMILQA---HD----HAIRSMVWSHNDNWMVSG--DDG----GAIKYWQNN 216 (715)
Q Consensus 155 dg~~Latgs-~dg~I~Iwd~~~----~~~~~~l~~---h~----~~V~~l~~spdg~~L~tg--s~d----g~I~iwd~~ 216 (715)
+.++|++.+ .++.|+|+|+.+ -++.++++. +. ..-..+--.++|+.++++ +.+ |-+.++|-+
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 567777776 678899999884 345555553 11 112233334688888764 222 568888888
Q ss_pred CCceeeeecCCC---CCeEEEEEecCCCEEEEEEC--------------------CCcEEEEECCCCeeEEEecccCC--
Q 005096 217 MNNVKANKSAHK---ESVRDLSFCRTDLKFCSCSD--------------------DTTVKVWDFARCQEERSLTGHGW-- 271 (715)
Q Consensus 217 ~~~~~~~~~~h~---~~I~~l~~spd~~~Las~s~--------------------Dg~V~iwdl~~~~~~~~l~~~~~-- 271 (715)
+.+++....... ..-.++-|.+..+.+++... ..+|.+||+.+.+.+.++.-...
T Consensus 166 tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~ 245 (461)
T PF05694_consen 166 TFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQ 245 (461)
T ss_dssp T--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEE
T ss_pred cccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCC
Confidence 877777665432 23456777787788887643 35799999999999988875432
Q ss_pred ceEEEEEcC--CCCEEEE-EeCCCcEEEE-ECCCCc----eeEEeccC-----------------CCceEEEEEcCCCCE
Q 005096 272 DVKSVDWHP--TKSLLVS-GGKDSLVKLW-DAKSGR----ELCSFHGH-----------------KNMVLCVKWNQNGNW 326 (715)
Q Consensus 272 ~I~si~~sp--dg~~L~s-gs~Dg~I~iw-Dl~s~~----~~~~~~~~-----------------~~~I~sl~~spdg~~ 326 (715)
....|.|.. +..+-++ +....+|.+| ..+.++ .+..+... ..-|+.|.+|.|.++
T Consensus 246 ~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrf 325 (461)
T PF05694_consen 246 MPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRF 325 (461)
T ss_dssp EEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-E
T ss_pred ceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCE
Confidence 344666644 4443333 3334445444 323332 22222110 244799999999999
Q ss_pred EEEEE-CCCeEEEEECCC
Q 005096 327 VLTAS-KDQIIKLYDIRA 343 (715)
Q Consensus 327 Lasgs-~dg~I~iwDl~t 343 (715)
|++++ .+|.|+.||+..
T Consensus 326 LYvs~W~~GdvrqYDISD 343 (461)
T PF05694_consen 326 LYVSNWLHGDVRQYDISD 343 (461)
T ss_dssp EEEEETTTTEEEEEE-SS
T ss_pred EEEEcccCCcEEEEecCC
Confidence 98776 789999999976
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00011 Score=71.75 Aligned_cols=140 Identities=13% Similarity=0.136 Sum_probs=80.7
Q ss_pred EEEEeCCCcEEEEeCCCCceeeeec-CCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEE-Eec-ccCCceEEEE
Q 005096 201 MVSGDDGGAIKYWQNNMNNVKANKS-AHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEER-SLT-GHGWDVKSVD 277 (715)
Q Consensus 201 L~tgs~dg~I~iwd~~~~~~~~~~~-~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~-~l~-~~~~~I~si~ 277 (715)
|...+.|+.|+-+++...+....-. .+... .....-+..+++|+.+|.|++|+.+-..... .+. ........|.
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~---~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip 109 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESCRSERFIDEG---QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIP 109 (238)
T ss_pred hccccCCcccccchhhhhhhhhhhhhhhhcc---eeecccCceEEeecccceEEEecCCccchHHHhhhcccccceeccc
Confidence 3445667888777665433221111 11111 2223345679999999999999886221111 111 1122222333
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCC-CceEEEEEcCCCCEEEEE--ECCCeEEEEECCC
Q 005096 278 WHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHK-NMVLCVKWNQNGNWVLTA--SKDQIIKLYDIRA 343 (715)
Q Consensus 278 ~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~-~~I~sl~~spdg~~Lasg--s~dg~I~iwDl~t 343 (715)
...++.+.++++.|+.|+.|++.-.+.+.....|. ..+..+..+-.++.|+++ +.|..++.|++..
T Consensus 110 ~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 110 NGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred cccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 34456688999999999999999888777666566 444444444445555555 5556666666543
|
|
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0026 Score=69.09 Aligned_cols=144 Identities=12% Similarity=0.140 Sum_probs=100.3
Q ss_pred CCCCEEE-EEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCE-------EEEEECCCcEEEEECCCCee--EEE
Q 005096 196 HNDNWMV-SGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLK-------FCSCSDDTTVKVWDFARCQE--ERS 265 (715)
Q Consensus 196 pdg~~L~-tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~-------Las~s~Dg~V~iwdl~~~~~--~~~ 265 (715)
.+.++|+ ++.....|+-.|++.++++..++.+.+ |.-+.+.++.+. -+.|-.|..|.-||.+-... +..
T Consensus 343 ~dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~ 421 (644)
T KOG2395|consen 343 ADSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAV 421 (644)
T ss_pred cccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeee
Confidence 3445554 455556788889999999999887776 777777776532 24566788899999853222 222
Q ss_pred ecc----cCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEEC
Q 005096 266 LTG----HGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDI 341 (715)
Q Consensus 266 l~~----~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl 341 (715)
... ......|++-..+| +|++|+.+|.|++||--..+....+-+....|..|..+.||++|++.| +..|.|.|+
T Consensus 422 ~q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t 499 (644)
T KOG2395|consen 422 VQSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDT 499 (644)
T ss_pred eeccccccccccceeeecCCc-eEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEE
Confidence 222 23445677766544 799999999999999733333444667788999999999999998776 556767665
Q ss_pred C
Q 005096 342 R 342 (715)
Q Consensus 342 ~ 342 (715)
.
T Consensus 500 ~ 500 (644)
T KOG2395|consen 500 L 500 (644)
T ss_pred e
Confidence 3
|
|
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.022 Score=67.44 Aligned_cols=195 Identities=9% Similarity=0.063 Sum_probs=120.4
Q ss_pred CCEEEEEeCCCeEEEEeCCCCceEEEEeccCCC--------EEEEEEcC----------------CCCEEEEEeCCCcEE
Q 005096 156 GRRLITGSQSGEFTLWNGQSFNFEMILQAHDHA--------IRSMVWSH----------------NDNWMVSGDDGGAIK 211 (715)
Q Consensus 156 g~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~--------V~~l~~sp----------------dg~~L~tgs~dg~I~ 211 (715)
+..|++++.++.|+-.|.++++.+-.+...... ...+++.. +++.|+.++.|+.|.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 446777788888888888888877766543211 12233321 345788888999999
Q ss_pred EEeCCCCceeeeecCCCCCeE-------------EEEEec--CCCEEEEEEC----------CCcEEEEECCCCeeEEEe
Q 005096 212 YWQNNMNNVKANKSAHKESVR-------------DLSFCR--TDLKFCSCSD----------DTTVKVWDFARCQEERSL 266 (715)
Q Consensus 212 iwd~~~~~~~~~~~~h~~~I~-------------~l~~sp--d~~~Las~s~----------Dg~V~iwdl~~~~~~~~l 266 (715)
-.|.++++.+..+.. +..|. .+.-.+ .+..+++++. +|.|+-+|.++++.+-.+
T Consensus 274 ALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 274 ALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW 352 (764)
T ss_pred EEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence 999999988766532 11110 001111 1345555542 688999999999988765
Q ss_pred ccc---------C--------Cce-EEEEEcCCCCEEEEEe------------------CCCcEEEEECCCCceeEEecc
Q 005096 267 TGH---------G--------WDV-KSVDWHPTKSLLVSGG------------------KDSLVKLWDAKSGRELCSFHG 310 (715)
Q Consensus 267 ~~~---------~--------~~I-~si~~spdg~~L~sgs------------------~Dg~I~iwDl~s~~~~~~~~~ 310 (715)
... . ..+ ..++++++..+++... ..+.|.-.|+++|+.+..+..
T Consensus 353 ~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~ 432 (764)
T TIGR03074 353 DPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQT 432 (764)
T ss_pred ecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEecc
Confidence 421 0 011 2345555555554432 124567778899988877754
Q ss_pred CCCce---------EEEEEcC-CCC---EEEEEECCCeEEEEECCCCeEEEEee
Q 005096 311 HKNMV---------LCVKWNQ-NGN---WVLTASKDQIIKLYDIRAMKELESFR 351 (715)
Q Consensus 311 ~~~~I---------~sl~~sp-dg~---~Lasgs~dg~I~iwDl~t~~~~~~~~ 351 (715)
....+ .-+.+.. +|+ .|+.++.+|.+.++|.++++.+...+
T Consensus 433 ~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~ 486 (764)
T TIGR03074 433 VHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVE 486 (764)
T ss_pred cCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeece
Confidence 22111 1122322 553 78899999999999999999887654
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00012 Score=71.55 Aligned_cols=145 Identities=14% Similarity=0.101 Sum_probs=87.2
Q ss_pred EEEEEeCCCcEEEEECCCCceeEEec-cCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEE-eecCCCCeEEEE
Q 005096 284 LLVSGGKDSLVKLWDAKSGRELCSFH-GHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELES-FRGHRKDVTALA 361 (715)
Q Consensus 284 ~L~sgs~Dg~I~iwDl~s~~~~~~~~-~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~-~~~h~~~V~~l~ 361 (715)
.|...+.|+.|+-++++.-+.-..-. -+.....-+ .-+..|++|+.+|.|.+|...-...... +......|.++.
T Consensus 32 ~l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~~~v~---~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~I 108 (238)
T KOG2444|consen 32 LLRATSADGLVRERKVRKHKESCRSERFIDEGQRVV---TASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGI 108 (238)
T ss_pred hhccccCCcccccchhhhhhhhhhhhhhhhcceeec---ccCceEEeecccceEEEecCCccchHHHhhhcccccceecc
Confidence 44556678888888876543221111 111111112 2346699999999999998763222222 222223333333
Q ss_pred EccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccC-CCEEEEEEcCCCCEEEEE--ECCCeEEEEecCCCCC
Q 005096 362 WHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHD-NTVWDLAWHPIGYLLCSG--SNDHTTKFWCRNRPGD 432 (715)
Q Consensus 362 ~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~-~~V~~l~~spdg~~L~sg--s~Dg~I~iWdl~~~~~ 432 (715)
-.-.++.+.++++.||.|+.|++.-.+.+-.. ..|. ..+..+..+..+++|+++ |.|..++.|++....+
T Consensus 109 p~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~-g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~~d 181 (238)
T KOG2444|consen 109 PNGRDSSLGCVGAQDGRIRACNIKPNKVLGYV-GQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEKIKD 181 (238)
T ss_pred ccccccceeEEeccCCceeeeccccCceeeee-ccccCCCcceeEEecCCceEEeeccccchhhhhcchhhhhc
Confidence 33335558899999999999999766554333 3355 566666666667777777 7788888888765444
|
|
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.003 Score=68.59 Aligned_cols=143 Identities=14% Similarity=0.153 Sum_probs=98.3
Q ss_pred CCCEEE-EEeCCCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCE-------EEEEECCCeEEEEECCCCeE--EEEe
Q 005096 281 TKSLLV-SGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNW-------VLTASKDQIIKLYDIRAMKE--LESF 350 (715)
Q Consensus 281 dg~~L~-sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~-------Lasgs~dg~I~iwDl~t~~~--~~~~ 350 (715)
+.++|+ .+.....|+-.|++.|+.+..++-+.. |+-+.+.++.+. -++|-.|..|.-||.|-... +...
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~ 422 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVV 422 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeee
Confidence 444444 455556788889999999999986555 777888876532 34566788999999883222 2222
Q ss_pred ecC----CCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEe
Q 005096 351 RGH----RKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWC 426 (715)
Q Consensus 351 ~~h----~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWd 426 (715)
..| .....|++-. ...+||+|+.+|.|++||- ........+.+....|..+..+.||++|+..+ +..+.+-+
T Consensus 423 q~kqy~~k~nFsc~aTT--~sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~ 498 (644)
T KOG2395|consen 423 QSKQYSTKNNFSCFATT--ESGYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLID 498 (644)
T ss_pred eccccccccccceeeec--CCceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEE
Confidence 222 2234444443 6789999999999999997 44444445556778999999999999877665 55666665
Q ss_pred cC
Q 005096 427 RN 428 (715)
Q Consensus 427 l~ 428 (715)
+.
T Consensus 499 t~ 500 (644)
T KOG2395|consen 499 TL 500 (644)
T ss_pred Ee
Confidence 53
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0056 Score=70.54 Aligned_cols=226 Identities=12% Similarity=0.120 Sum_probs=119.2
Q ss_pred cCCCCEEEEEeCCC------eEEEEeCCCCceEEEEecc-CCCEEEEEEcCCCCEEEEEeCC------CcEEEEeCCCCc
Q 005096 153 TPTGRRLITGSQSG------EFTLWNGQSFNFEMILQAH-DHAIRSMVWSHNDNWMVSGDDG------GAIKYWQNNMNN 219 (715)
Q Consensus 153 spdg~~Latgs~dg------~I~Iwd~~~~~~~~~l~~h-~~~V~~l~~spdg~~L~tgs~d------g~I~iwd~~~~~ 219 (715)
+..+.++++|+.++ .|..||..+........-. .....++++. ++.++++|+.| .++..||..++.
T Consensus 282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~ 360 (571)
T KOG4441|consen 282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQ 360 (571)
T ss_pred CCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCc
Confidence 33455677777763 5788888776443332222 2223344444 55777888888 346677777665
Q ss_pred eeeeecCCCCCeEEEEEecCCCEEEEEECCCc-----EEEEECCCCee--EEEecccCCceEEEEEcCCCCEEEEEeCCC
Q 005096 220 VKANKSAHKESVRDLSFCRTDLKFCSCSDDTT-----VKVWDFARCQE--ERSLTGHGWDVKSVDWHPTKSLLVSGGKDS 292 (715)
Q Consensus 220 ~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~-----V~iwdl~~~~~--~~~l~~~~~~I~si~~spdg~~L~sgs~Dg 292 (715)
-...-.-.......-...-+|...|+|+.||. |-.||..+.+- +............+.+ ++.+.++|+.|+
T Consensus 361 W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~--~g~iYi~GG~~~ 438 (571)
T KOG4441|consen 361 WTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVL--GGKLYIIGGGDG 438 (571)
T ss_pred eeccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEE--CCEEEEEcCcCC
Confidence 32211111111111111226778888888864 66777755432 2222212222223333 477788887554
Q ss_pred ------cEEEEECCCCceeE--EeccCCCceEEEEEcCCCCEEEEEECCC-----eEEEEECCCCeE--EEEeecCCCCe
Q 005096 293 ------LVKLWDAKSGRELC--SFHGHKNMVLCVKWNQNGNWVLTASKDQ-----IIKLYDIRAMKE--LESFRGHRKDV 357 (715)
Q Consensus 293 ------~I~iwDl~s~~~~~--~~~~~~~~I~sl~~spdg~~Lasgs~dg-----~I~iwDl~t~~~--~~~~~~h~~~V 357 (715)
.+..||..+++-.. .+........ ++. -++.+.++|+.|+ +|..||.++.+- +.........+
T Consensus 439 ~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~a~-~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~ 516 (571)
T KOG4441|consen 439 SSNCLNSVECYDPETNTWTLIAPMNTRRSGFG-VAV-LNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAV 516 (571)
T ss_pred CccccceEEEEcCCCCceeecCCcccccccce-EEE-ECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccc
Confidence 46788887654332 2221222222 222 2567777787666 377788876443 32233333333
Q ss_pred EEEEEccCCCCEEEEEeCCCc-----EEEEEcCC
Q 005096 358 TALAWHPFHEEYFVSGSLDGS-----IFHWLVGH 386 (715)
Q Consensus 358 ~~l~~sp~~~~~l~sgs~DG~-----I~iwd~~~ 386 (715)
..+.+ ++.+.++|+.||. |..||-.+
T Consensus 517 g~~~~---~~~ly~vGG~~~~~~l~~ve~ydp~~ 547 (571)
T KOG4441|consen 517 GVVVL---GGKLYAVGGFDGNNNLNTVECYDPET 547 (571)
T ss_pred cEEEE---CCEEEEEecccCccccceeEEcCCCC
Confidence 33333 6788888887763 44554433
|
|
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0031 Score=73.87 Aligned_cols=141 Identities=13% Similarity=0.158 Sum_probs=89.5
Q ss_pred CeEEEEEecCCCEEEEE--ECCCcEEEEECCCCeeEE-----Ee------cccCCceEEEEEcCCCC-EEEEEeCCCcEE
Q 005096 230 SVRDLSFCRTDLKFCSC--SDDTTVKVWDFARCQEER-----SL------TGHGWDVKSVDWHPTKS-LLVSGGKDSLVK 295 (715)
Q Consensus 230 ~I~~l~~spd~~~Las~--s~Dg~V~iwdl~~~~~~~-----~l------~~~~~~I~si~~spdg~-~L~sgs~Dg~I~ 295 (715)
.|..+...+|....++. +.+-.|..||+++..... -+ ........++.|+|.-. ..+++..|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 44555555666554433 334478999986543322 11 11223456788887532 456677889898
Q ss_pred EEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeec----CCCCeEEEEEccCCCCEEE
Q 005096 296 LWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRG----HRKDVTALAWHPFHEEYFV 371 (715)
Q Consensus 296 iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~----h~~~V~~l~~sp~~~~~l~ 371 (715)
+..+........--......+|++|++.|+.+++|...|++.-|... ++....+.+ ....|.+|+|.. ...+++
T Consensus 182 V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~-t~eflv 259 (1405)
T KOG3630|consen 182 VKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLS-TQEFLV 259 (1405)
T ss_pred hhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEec-ceeEEE
Confidence 88776433222222355678999999999999999999999888754 444444332 146799999987 445544
Q ss_pred E
Q 005096 372 S 372 (715)
Q Consensus 372 s 372 (715)
+
T Consensus 260 v 260 (1405)
T KOG3630|consen 260 V 260 (1405)
T ss_pred E
Confidence 3
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.023 Score=58.07 Aligned_cols=163 Identities=10% Similarity=0.150 Sum_probs=116.0
Q ss_pred cCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEeccc-CCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 005096 225 SAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGH-GWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGR 303 (715)
Q Consensus 225 ~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~-~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~ 303 (715)
.+....|.++.|+++.+.|++......-.||=..+++.++++.-. -.....|++.-++.++++--.+..++++.+....
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t 161 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADT 161 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCc
Confidence 455566999999999999999998888888877788888876432 2345678888788887777788888888766543
Q ss_pred eeEEe----------ccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeE---EEEee-------cCCCCeEEEEEc
Q 005096 304 ELCSF----------HGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKE---LESFR-------GHRKDVTALAWH 363 (715)
Q Consensus 304 ~~~~~----------~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~---~~~~~-------~h~~~V~~l~~s 363 (715)
.+..+ ...+.....++|++....|+++-+..=+.||.+..... +.... ..-..|.++.|+
T Consensus 162 ~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~ 241 (316)
T COG3204 162 TVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFN 241 (316)
T ss_pred cEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceec
Confidence 22211 11255678899999988888888887777776653321 11111 113457888999
Q ss_pred cCCCCEEEEEeCCCcEEEEEcCCC
Q 005096 364 PFHEEYFVSGSLDGSIFHWLVGHE 387 (715)
Q Consensus 364 p~~~~~l~sgs~DG~I~iwd~~~~ 387 (715)
+..+.+++-+.+++.|.-.|....
T Consensus 242 ~~~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 242 AITNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred CCCCcEEEEecCCceEEEEecCCC
Confidence 877888888888888877777544
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0097 Score=68.64 Aligned_cols=210 Identities=6% Similarity=0.029 Sum_probs=102.2
Q ss_pred cEEEEeCCCCceeeeecCCCCCe-EEEEEecCCCEEEEEECC------CcEEEEECCCCeeEE--EecccCCceEEEEEc
Q 005096 209 AIKYWQNNMNNVKANKSAHKESV-RDLSFCRTDLKFCSCSDD------TTVKVWDFARCQEER--SLTGHGWDVKSVDWH 279 (715)
Q Consensus 209 ~I~iwd~~~~~~~~~~~~h~~~I-~~l~~spd~~~Las~s~D------g~V~iwdl~~~~~~~--~l~~~~~~I~si~~s 279 (715)
.+..||..+++....-....... .+++. -++..+++|+.+ ..+..||..+.+-.. .+.........+++
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~~~~a~-l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~- 350 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIINYASAI-VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVI- 350 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccceEEEE-ECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEE-
Confidence 46778877664332211111111 12222 256666777653 347788876653221 11111112222233
Q ss_pred CCCCEEEEEeCCC-----cEEEEECCCCceeE--EeccCCCceEEEEEcCCCCEEEEEECC-------------------
Q 005096 280 PTKSLLVSGGKDS-----LVKLWDAKSGRELC--SFHGHKNMVLCVKWNQNGNWVLTASKD------------------- 333 (715)
Q Consensus 280 pdg~~L~sgs~Dg-----~I~iwDl~s~~~~~--~~~~~~~~I~sl~~spdg~~Lasgs~d------------------- 333 (715)
++++.++|+.++ .+.+||.++.+-.. .+.........+++ ++++.++|+.+
T Consensus 351 -~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~~~~ 427 (557)
T PHA02713 351 -DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVL--DQYIYIIGGRTEHIDYTSVHHMNSIDMEED 427 (557)
T ss_pred -CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEE--CCEEEEEeCCCccccccccccccccccccc
Confidence 477778887654 47889987653221 11111111222222 57777777654
Q ss_pred ----CeEEEEECCCCeE--EEEeecCCCCeEEEEEccCCCCEEEEEeCCC------cEEEEEcCC-CCceE-EEeeccCC
Q 005096 334 ----QIIKLYDIRAMKE--LESFRGHRKDVTALAWHPFHEEYFVSGSLDG------SIFHWLVGH-ETPQV-EIHNVHDN 399 (715)
Q Consensus 334 ----g~I~iwDl~t~~~--~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG------~I~iwd~~~-~~~~~-~~~~~h~~ 399 (715)
..|..||.++.+- +..+....... +++.. ++.+.+.|+.++ .|..||..+ +.... ........
T Consensus 428 ~~~~~~ve~YDP~td~W~~v~~m~~~r~~~-~~~~~--~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~ 504 (557)
T PHA02713 428 THSSNKVIRYDTVNNIWETLPNFWTGTIRP-GVVSH--KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLS 504 (557)
T ss_pred ccccceEEEECCCCCeEeecCCCCcccccC-cEEEE--CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccc
Confidence 2477788766433 22222111111 22222 677777777542 366788876 33221 11111111
Q ss_pred CEEEEEEcCCCCEEEEEECCC--eEEEEecC
Q 005096 400 TVWDLAWHPIGYLLCSGSNDH--TTKFWCRN 428 (715)
Q Consensus 400 ~V~~l~~spdg~~L~sgs~Dg--~I~iWdl~ 428 (715)
....+.+ ++++.++|+.|+ .+..||..
T Consensus 505 ~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~ 533 (557)
T PHA02713 505 ALHTILH--DNTIMMLHCYESYMLQDTFNVY 533 (557)
T ss_pred cceeEEE--CCEEEEEeeecceeehhhcCcc
Confidence 2222223 678889999888 55556553
|
|
| >COG5276 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.18 Score=51.51 Aligned_cols=270 Identities=9% Similarity=-0.029 Sum_probs=150.6
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccC--CCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC---c
Q 005096 145 CSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHD--HAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN---N 219 (715)
Q Consensus 145 ~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~--~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~---~ 219 (715)
+.+..+.++ ++++..+..+.-++|.|+.+-.....+..-+ +--.++.. .|++..++..|.-+.+.|+.+. .
T Consensus 87 ~l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v--sGn~aYVadlddgfLivdvsdpssP~ 162 (370)
T COG5276 87 DLFADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV--SGNYAYVADLDDGFLIVDVSDPSSPQ 162 (370)
T ss_pred hhhheeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe--cCCEEEEeeccCcEEEEECCCCCCce
Confidence 345566665 4567777777789999998765444433222 33344444 5899988886666777887654 3
Q ss_pred eeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEec--ccCCceEEEEEcCCCCEEEEEeCCCcEEEE
Q 005096 220 VKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLT--GHGWDVKSVDWHPTKSLLVSGGKDSLVKLW 297 (715)
Q Consensus 220 ~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~--~~~~~I~si~~spdg~~L~sgs~Dg~I~iw 297 (715)
+...+.........++++ |++.+.+..|+-+.|.|+.+...-..+. .....+.++..+++..+++.. +.-+.+-
T Consensus 163 lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy--~egvliv 238 (370)
T COG5276 163 LAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVY--DEGVLIV 238 (370)
T ss_pred eeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEc--ccceEEE
Confidence 344444444444666665 6778888899999999996644322221 233367888888654444433 3447788
Q ss_pred ECCCCceeEEecc-CCCceEEE-EEcCCCCEEEEEECCCeEEEEECCCCeE---EEEeecCCCCeEEEEEccCCCCEEEE
Q 005096 298 DAKSGRELCSFHG-HKNMVLCV-KWNQNGNWVLTASKDQIIKLYDIRAMKE---LESFRGHRKDVTALAWHPFHEEYFVS 372 (715)
Q Consensus 298 Dl~s~~~~~~~~~-~~~~I~sl-~~spdg~~Lasgs~dg~I~iwDl~t~~~---~~~~~~h~~~V~~l~~sp~~~~~l~s 372 (715)
|..+.+....+.. ....+.++ .+.-.+++......+.-+.+-|+.+-.. ...+......-..+.. .+.++..
T Consensus 239 d~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp~spfl~ss~~t~g~~a~gi~a---y~~y~yi 315 (370)
T COG5276 239 DVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISNPPSPFLSSSLDTAGYQAAGIRA---YGNYNYI 315 (370)
T ss_pred ecCCCCCceEeeccccCCcccccceecccceeeeeccccCceeEeccCCCCCchhccccCCCccccceEE---ecCeeEe
Confidence 8877664444421 12223232 2223467777777777777777764321 1112211112233333 2344444
Q ss_pred EeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEec
Q 005096 373 GSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCR 427 (715)
Q Consensus 373 gs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl 427 (715)
+..+ ...+.+....+..-+.. +....+.+.+.+-+.+++.+...++-+.||+.
T Consensus 316 adkn-~g~vV~~s~~s~m~~~~-g~~ti~~s~~v~~~~q~~y~~d~~~gl~i~~~ 368 (370)
T COG5276 316 ADKN-TGAVVDASPPSMMDKRP-GRPTIGQSCDVSVDTQIIYSTDYNGGLSIIEY 368 (370)
T ss_pred ccCC-ceEEEeCCChhhccccc-CcceEeeecceEEEeeEEEEeecCCCEEEEEe
Confidence 4444 44444543322211111 11112334444445568888889999999975
|
|
| >COG1520 FOG: WD40-like repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.18 Score=55.20 Aligned_cols=193 Identities=9% Similarity=0.033 Sum_probs=110.0
Q ss_pred EEEEEeCCCeEEEEeCCCCceEEEEeccC--CCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeecCCC-CCeEEE
Q 005096 158 RLITGSQSGEFTLWNGQSFNFEMILQAHD--HAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHK-ESVRDL 234 (715)
Q Consensus 158 ~Latgs~dg~I~Iwd~~~~~~~~~l~~h~--~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~-~~I~~l 234 (715)
.++++..+|.|.-.|.++++.+.....-. ..+.+-.+..+|+ |++++.++.+..+|..+++.+....... ..+..-
T Consensus 70 ~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~~ 148 (370)
T COG1520 70 TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPYYASP 148 (370)
T ss_pred eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCCCeEEecC
Confidence 46666888888888888877654332221 2222323333555 7778888888888988888877766555 112222
Q ss_pred EEecCCCEEEEEECCCcEEEEECCCCeeEEEecccC---CceEEEEEcCCCCEEEEEeC--CCcEEEEECCCCceeEEec
Q 005096 235 SFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHG---WDVKSVDWHPTKSLLVSGGK--DSLVKLWDAKSGRELCSFH 309 (715)
Q Consensus 235 ~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~---~~I~si~~spdg~~L~sgs~--Dg~I~iwDl~s~~~~~~~~ 309 (715)
.+..+ ..++.++.++.+...|.++++.+-...... ..+..--.. ....++.+.. ++.+.-+|.+++..+...+
T Consensus 149 ~v~~~-~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~-~~~~vy~~~~~~~~~~~a~~~~~G~~~w~~~ 226 (370)
T COG1520 149 PVVGD-GTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAI-ASGTVYVGSDGYDGILYALNAEDGTLKWSQK 226 (370)
T ss_pred cEEcC-cEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCcee-ecceEEEecCCCcceEEEEEccCCcEeeeee
Confidence 22223 334444477888888888887765543321 111111112 2334555555 5667777888887766532
Q ss_pred c----CCCceEEE-EEcC----CCCEEEEEECCCeEEEEECCCCeEEEEeecC
Q 005096 310 G----HKNMVLCV-KWNQ----NGNWVLTASKDQIIKLYDIRAMKELESFRGH 353 (715)
Q Consensus 310 ~----~~~~I~sl-~~sp----dg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h 353 (715)
. ....+... .+.. .+.-++.++.++.+...|..+++.+.++...
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~~ 279 (370)
T COG1520 227 VSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPAG 279 (370)
T ss_pred eecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEecc
Confidence 1 11111001 1100 1122466777888999999999999888764
|
|
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.038 Score=65.47 Aligned_cols=196 Identities=12% Similarity=0.117 Sum_probs=117.6
Q ss_pred CCEEEEEeCCCcEEEEeCCCCceeeeecCCCC--------CeEEEEEec----------------CCCEEEEEECCCcEE
Q 005096 198 DNWMVSGDDGGAIKYWQNNMNNVKANKSAHKE--------SVRDLSFCR----------------TDLKFCSCSDDTTVK 253 (715)
Q Consensus 198 g~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~--------~I~~l~~sp----------------d~~~Las~s~Dg~V~ 253 (715)
+..|++++.++.|.-.|..+++.+..+..... .++.+++.. .+..|+.++.|+.|.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 45677777788888888888877766543221 122333321 234788899999999
Q ss_pred EEECCCCeeEEEecccCCceE-------------EEEEcC--CCCEEEEEeC----------CCcEEEEECCCCceeEEe
Q 005096 254 VWDFARCQEERSLTGHGWDVK-------------SVDWHP--TKSLLVSGGK----------DSLVKLWDAKSGRELCSF 308 (715)
Q Consensus 254 iwdl~~~~~~~~l~~~~~~I~-------------si~~sp--dg~~L~sgs~----------Dg~I~iwDl~s~~~~~~~ 308 (715)
-.|.++++.+..+... +.|. .+.-.| .+..+++++. +|.|+-+|+++|+.+..+
T Consensus 274 ALDA~TGk~~W~fg~~-G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 274 ALDADTGKLCEDFGNN-GTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW 352 (764)
T ss_pred EEECCCCCEEEEecCC-CceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence 9999999988766421 1110 011111 1345666642 588999999999998876
Q ss_pred ccC---------CCc--------e-EEEEEcCCCCEEEEEE------------------CCCeEEEEECCCCeEEEEeec
Q 005096 309 HGH---------KNM--------V-LCVKWNQNGNWVLTAS------------------KDQIIKLYDIRAMKELESFRG 352 (715)
Q Consensus 309 ~~~---------~~~--------I-~sl~~spdg~~Lasgs------------------~dg~I~iwDl~t~~~~~~~~~ 352 (715)
... .+. + ...+++++..+++.+. ..+.|.-.|.++++.+..+..
T Consensus 353 ~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~ 432 (764)
T TIGR03074 353 DPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQT 432 (764)
T ss_pred ecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEecc
Confidence 421 000 1 2234555444444422 124566778888888877764
Q ss_pred CCCCeEE---------EEEccCCC---CEEEEEeCCCcEEEEEcCCCCceEEEe
Q 005096 353 HRKDVTA---------LAWHPFHE---EYFVSGSLDGSIFHWLVGHETPQVEIH 394 (715)
Q Consensus 353 h~~~V~~---------l~~sp~~~---~~l~sgs~DG~I~iwd~~~~~~~~~~~ 394 (715)
....+.+ +.+...++ ..++.++.+|.++++|-++++.+..+.
T Consensus 433 ~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~ 486 (764)
T TIGR03074 433 VHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVE 486 (764)
T ss_pred cCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeece
Confidence 2222111 11211133 278888889999999988887665543
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00075 Score=74.57 Aligned_cols=94 Identities=19% Similarity=0.308 Sum_probs=79.7
Q ss_pred CCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceE-EEEEcCCCCEEEEEeCCCcEEEEECCCCcee
Q 005096 227 HKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVK-SVDWHPTKSLLVSGGKDSLVKLWDAKSGREL 305 (715)
Q Consensus 227 h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~-si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~ 305 (715)
....|.-+.|+|.-..||.+..+|.|.+..++ ...+.++..++..++ +++|.+||++|++|-.||+|+|.|+.++..+
T Consensus 19 l~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 19 LPINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred cccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCce
Confidence 34567889999999999999999999999988 778888886777777 9999999999999999999999999998877
Q ss_pred EEe-ccCCCceEEEEEc
Q 005096 306 CSF-HGHKNMVLCVKWN 321 (715)
Q Consensus 306 ~~~-~~~~~~I~sl~~s 321 (715)
..+ ......|.++.|+
T Consensus 98 ~~~~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 98 VSFLFSVETDISKGIWD 114 (665)
T ss_pred eccccccccchheeecc
Confidence 663 2245568888886
|
|
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.18 Score=52.06 Aligned_cols=215 Identities=13% Similarity=0.203 Sum_probs=122.7
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEeCC-------CCceEEEEec-----cCCCEEEEEEcCCCC------------EEE
Q 005096 147 INRVLWTPTGRRLITGSQSGEFTLWNGQ-------SFNFEMILQA-----HDHAIRSMVWSHNDN------------WMV 202 (715)
Q Consensus 147 I~~l~~spdg~~Latgs~dg~I~Iwd~~-------~~~~~~~l~~-----h~~~V~~l~~spdg~------------~L~ 202 (715)
-..|+++|.+.+-++....+...+||.. ...++..+.. .....+.+.|+.... .++
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fi 104 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFL 104 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEE
Confidence 3578999999877787888999999986 1223333331 124567777764322 367
Q ss_pred EEeCCCcEEEEeCCCCce-----eeeec-C-CCCCeEEEEEecC--CCEEEEE-ECCCcEEEEECCCCeeEEE---eccc
Q 005096 203 SGDDGGAIKYWQNNMNNV-----KANKS-A-HKESVRDLSFCRT--DLKFCSC-SDDTTVKVWDFARCQEERS---LTGH 269 (715)
Q Consensus 203 tgs~dg~I~iwd~~~~~~-----~~~~~-~-h~~~I~~l~~spd--~~~Las~-s~Dg~V~iwdl~~~~~~~~---l~~~ 269 (715)
.+++||+|.-|.-..... ...+. . ....-+.+++... +.+|+.+ -.+++|.|||-.= ..+.. +...
T Consensus 105 f~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f-~~~~~~g~F~DP 183 (336)
T TIGR03118 105 FVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSF-RPPPLPGSFIDP 183 (336)
T ss_pred EEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCcc-ccccCCCCccCC
Confidence 788999999998432211 11121 1 1223345666533 4555544 3578899988532 21111 1100
Q ss_pred -----C--CceEEE---------EEcCCCCEEEEEeCCCcEEEEECCCCceeEEec--cCCCceEEEEEcC------CCC
Q 005096 270 -----G--WDVKSV---------DWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFH--GHKNMVLCVKWNQ------NGN 325 (715)
Q Consensus 270 -----~--~~I~si---------~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~--~~~~~I~sl~~sp------dg~ 325 (715)
- ..|..| .-.++.+.=+.+..-|.|.+||+. ++.++++. +.-+.-+.|+..| .+.
T Consensus 184 ~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~ 262 (336)
T TIGR03118 184 ALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPESFGSLSGA 262 (336)
T ss_pred CCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeChhhhCCCCCC
Confidence 0 001111 011111111223334789999987 77777774 2223445666644 456
Q ss_pred EEEEEECCCeEEEEECCCCeEEEEeecCCC------CeEEEEEc
Q 005096 326 WVLTASKDQIIKLYDIRAMKELESFRGHRK------DVTALAWH 363 (715)
Q Consensus 326 ~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~------~V~~l~~s 363 (715)
+|+--..||+|..||..+++.+..++...+ .++.|+|.
T Consensus 263 lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fG 306 (336)
T TIGR03118 263 LLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFG 306 (336)
T ss_pred eEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeC
Confidence 666666899999999999998887775443 34556654
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.015 Score=51.05 Aligned_cols=101 Identities=17% Similarity=0.177 Sum_probs=70.3
Q ss_pred eEEEEEec---CC-CEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeE
Q 005096 231 VRDLSFCR---TD-LKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELC 306 (715)
Q Consensus 231 I~~l~~sp---d~-~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~ 306 (715)
|++++++. |+ +.|++|+.|..|++|+-+ +.+..+. ....|++++-... ..|+.+..+|+|-+|+-. ..+.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~-e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~--~RlW 75 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEIT-ETDKVTSLCSLGG-GRFAYALANGTVGVYDRS--QRLW 75 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEe-cccceEEEEEcCC-CEEEEEecCCEEEEEeCc--ceee
Confidence 56666654 32 679999999999999854 4555555 4557788877654 679999999999999853 3445
Q ss_pred EeccCCCceEEEEEcC-C--C-CEEEEEECCCeEEE
Q 005096 307 SFHGHKNMVLCVKWNQ-N--G-NWVLTASKDQIIKL 338 (715)
Q Consensus 307 ~~~~~~~~I~sl~~sp-d--g-~~Lasgs~dg~I~i 338 (715)
.++. +..++++.+.. + | .-|++|-.+|.|-+
T Consensus 76 RiKS-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 76 RIKS-KNQVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred eecc-CCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 5553 34466766544 2 2 36888888988754
|
|
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.16 Score=55.82 Aligned_cols=84 Identities=15% Similarity=0.181 Sum_probs=60.1
Q ss_pred cCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCce----EEEEEcCC--------------CC-EEEE
Q 005096 269 HGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMV----LCVKWNQN--------------GN-WVLT 329 (715)
Q Consensus 269 ~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I----~sl~~spd--------------g~-~Las 329 (715)
....+.+|+.+|++++.++...=|.|.++|+.++..++.+++..+.- ....-... .. +++.
T Consensus 306 ~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIy 385 (415)
T PF14655_consen 306 SKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIY 385 (415)
T ss_pred CCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEE
Confidence 34568899999999988888888999999999999888888655421 11111100 11 2334
Q ss_pred EECCCeEEEEECCCCeEEEEeec
Q 005096 330 ASKDQIIKLYDIRAMKELESFRG 352 (715)
Q Consensus 330 gs~dg~I~iwDl~t~~~~~~~~~ 352 (715)
+-.-|.|.||+++++..+..+..
T Consensus 386 aprRg~lEvW~~~~g~Rv~a~~v 408 (415)
T PF14655_consen 386 APRRGILEVWSMRQGPRVAAFNV 408 (415)
T ss_pred eccCCeEEEEecCCCCEEEEEEe
Confidence 56789999999999888877664
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.016 Score=66.90 Aligned_cols=215 Identities=13% Similarity=0.123 Sum_probs=114.2
Q ss_pred CCCEEEEEeCC------CcEEEEeCCCCceeeeecC-CCCCeEEEEEecCCCEEEEEECC------CcEEEEECCCCeeE
Q 005096 197 NDNWMVSGDDG------GAIKYWQNNMNNVKANKSA-HKESVRDLSFCRTDLKFCSCSDD------TTVKVWDFARCQEE 263 (715)
Q Consensus 197 dg~~L~tgs~d------g~I~iwd~~~~~~~~~~~~-h~~~I~~l~~spd~~~Las~s~D------g~V~iwdl~~~~~~ 263 (715)
.+.++++|+.+ ..|..||..++.......- ....-.++++. ++...++|+.| .++..||..+.+-.
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~ 362 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWT 362 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCcee
Confidence 34566677666 3577788777643322211 22223334443 55777888888 35777887655422
Q ss_pred E--EecccCCceEEEEEcCCCCEEEEEeCCCc-----EEEEECCCCceeEE--eccCCCceEEEEEcCCCCEEEEEECCC
Q 005096 264 R--SLTGHGWDVKSVDWHPTKSLLVSGGKDSL-----VKLWDAKSGRELCS--FHGHKNMVLCVKWNQNGNWVLTASKDQ 334 (715)
Q Consensus 264 ~--~l~~~~~~I~si~~spdg~~L~sgs~Dg~-----I~iwDl~s~~~~~~--~~~~~~~I~sl~~spdg~~Lasgs~dg 334 (715)
. .+...........+ +|.+.++|+.||. |..||.++.+-... ..........+. -++++.++|+.++
T Consensus 363 ~~a~M~~~R~~~~v~~l--~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~--~~g~iYi~GG~~~ 438 (571)
T KOG4441|consen 363 PVAPMNTKRSDFGVAVL--DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAV--LGGKLYIIGGGDG 438 (571)
T ss_pred ccCCccCccccceeEEE--CCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEE--ECCEEEEEcCcCC
Confidence 2 22222222222222 4788889998864 77888776542221 211111122222 2677777777554
Q ss_pred ------eEEEEECCCCeE--EEEeecCCCCeEEEEEccCCCCEEEEEeCCCc-----EEEEEcCCCCceEEEeec-cCCC
Q 005096 335 ------IIKLYDIRAMKE--LESFRGHRKDVTALAWHPFHEEYFVSGSLDGS-----IFHWLVGHETPQVEIHNV-HDNT 400 (715)
Q Consensus 335 ------~I~iwDl~t~~~--~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~-----I~iwd~~~~~~~~~~~~~-h~~~ 400 (715)
+|..||..+.+- +..+..-..... ++.. ++.+++.|+.|+. |..||..+.......... ....
T Consensus 439 ~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~a~~--~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~ 515 (571)
T KOG4441|consen 439 SSNCLNSVECYDPETNTWTLIAPMNTRRSGFG-VAVL--NGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSA 515 (571)
T ss_pred CccccceEEEEcCCCCceeecCCcccccccce-EEEE--CCEEEEECCccCCCccceEEEEcCCCCceeEcccCcccccc
Confidence 577888776543 333322222222 2222 7888888888763 667777666543332111 2222
Q ss_pred EEEEEEcCCCCEEEEEECCCe
Q 005096 401 VWDLAWHPIGYLLCSGSNDHT 421 (715)
Q Consensus 401 V~~l~~spdg~~L~sgs~Dg~ 421 (715)
+..+.+ ++.+.++|+.||.
T Consensus 516 ~g~~~~--~~~ly~vGG~~~~ 534 (571)
T KOG4441|consen 516 VGVVVL--GGKLYAVGGFDGN 534 (571)
T ss_pred ccEEEE--CCEEEEEecccCc
Confidence 222333 4677788887764
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.014 Score=51.27 Aligned_cols=101 Identities=20% Similarity=0.205 Sum_probs=69.5
Q ss_pred eEEEEEcC---CC-CEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCce
Q 005096 315 VLCVKWNQ---NG-NWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQ 390 (715)
Q Consensus 315 I~sl~~sp---dg-~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~ 390 (715)
|+++++.. || +.|++|+.|..|+||+-. +.+.++. ....|++++-. ....|+.+..+|+|-+|+-.. ..
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~-e~~~v~~L~~~--~~~~F~Y~l~NGTVGvY~~~~--Rl 74 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEIT-ETDKVTSLCSL--GGGRFAYALANGTVGVYDRSQ--RL 74 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEe-cccceEEEEEc--CCCEEEEEecCCEEEEEeCcc--ee
Confidence 56666654 33 689999999999999843 5556655 45567777766 457899999999999997633 33
Q ss_pred EEEeeccCCCEEEEEEcCC---C-CEEEEEECCCeEEE
Q 005096 391 VEIHNVHDNTVWDLAWHPI---G-YLLCSGSNDHTTKF 424 (715)
Q Consensus 391 ~~~~~~h~~~V~~l~~spd---g-~~L~sgs~Dg~I~i 424 (715)
+++.. +..++++.+..- | .-|++|-.+|.|-+
T Consensus 75 WRiKS--K~~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 75 WRIKS--KNQVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred eeecc--CCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 34433 335777765432 2 46888888888753
|
|
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.54 Score=51.81 Aligned_cols=268 Identities=11% Similarity=0.098 Sum_probs=142.4
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCce----EEEEeccCCCEEEEEEcC-----CCCEEEEEeCCCcEEEEeCCCC--c----
Q 005096 155 TGRRLITGSQSGEFTLWNGQSFNF----EMILQAHDHAIRSMVWSH-----NDNWMVSGDDGGAIKYWQNNMN--N---- 219 (715)
Q Consensus 155 dg~~Latgs~dg~I~Iwd~~~~~~----~~~l~~h~~~V~~l~~sp-----dg~~L~tgs~dg~I~iwd~~~~--~---- 219 (715)
+...|++|+.+|.++||+-...+. +..-..-+..|..|+.-. +...||+ -.-..+.||.+... .
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~g 114 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEHG 114 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcccC
Confidence 346899999999999998654321 111122346777776532 2234444 44567778876221 1
Q ss_pred ---eeeeecCCC--CCeEEEEEec----C-CCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEe
Q 005096 220 ---VKANKSAHK--ESVRDLSFCR----T-DLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGG 289 (715)
Q Consensus 220 ---~~~~~~~h~--~~I~~l~~sp----d-~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs 289 (715)
.+.....|. .....+++-+ . ..+|++-+.||.+.+|+-+.....+.+.. ----..+++.+..+.|++++
T Consensus 115 ~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsfvt~s 193 (418)
T PF14727_consen 115 NQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSFVTAS 193 (418)
T ss_pred cEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEEEEec
Confidence 111112222 2222333322 1 36788899999999999776554454443 22334678888888899999
Q ss_pred CCCcEEEEECCC--------------------Ccee---EEeccCCC---ceEEEEEcCCCCEEEEEECCCeEEEEECCC
Q 005096 290 KDSLVKLWDAKS--------------------GREL---CSFHGHKN---MVLCVKWNQNGNWVLTASKDQIIKLYDIRA 343 (715)
Q Consensus 290 ~Dg~I~iwDl~s--------------------~~~~---~~~~~~~~---~I~sl~~spdg~~Lasgs~dg~I~iwDl~t 343 (715)
.+..|..|.... ++.+ .++. -.. .|..+.++.....|++-+ ...+.+.+. +
T Consensus 194 ss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~n-lGE~~l~i~v~~~~~~~~~IvvLg-er~Lf~l~~-~ 270 (418)
T PF14727_consen 194 SSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFN-LGEQALDIQVVRFSSSESDIVVLG-ERSLFCLKD-N 270 (418)
T ss_pred CceeEEEecHHHhhhccccccccccccccccccccccceeEEE-CCceeEEEEEEEcCCCCceEEEEe-cceEEEEcC-C
Confidence 888888886421 0100 1111 111 233344443334444444 445655554 3
Q ss_pred CeEEEEeecCCCCeEEEE-E------ccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCE--EEEEEcCCCCEEE
Q 005096 344 MKELESFRGHRKDVTALA-W------HPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTV--WDLAWHPIGYLLC 414 (715)
Q Consensus 344 ~~~~~~~~~h~~~V~~l~-~------sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V--~~l~~spdg~~L~ 414 (715)
|......+- +....+++ + .+.....+++++.++.+.||.-.+-. +.... ...+| .-..|..-...|+
T Consensus 271 G~l~~~krL-d~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~~L~--WsA~l-~~~PVal~v~~~~~~~G~IV 346 (418)
T PF14727_consen 271 GSLRFQKRL-DYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDTTLV--WSAQL-PHVPVALSVANFNGLKGLIV 346 (418)
T ss_pred CeEEEEEec-CCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCCeEE--EecCC-CCCCEEEEecccCCCCceEE
Confidence 544333332 22222221 1 11112358888889999988643211 11111 11122 2222333356889
Q ss_pred EEECCCeEEEEecCCCC
Q 005096 415 SGSNDHTTKFWCRNRPG 431 (715)
Q Consensus 415 sgs~Dg~I~iWdl~~~~ 431 (715)
+-+.||.+.+-=+.++-
T Consensus 347 ~Ls~~G~L~v~YLGTdP 363 (418)
T PF14727_consen 347 SLSDEGQLSVSYLGTDP 363 (418)
T ss_pred EEcCCCcEEEEEeCCCC
Confidence 99999999987665544
|
|
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.075 Score=52.48 Aligned_cols=206 Identities=11% Similarity=0.094 Sum_probs=114.6
Q ss_pred CEEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCC---CEEEEEECCCcEEEEECC--CCeeEEEec-----c
Q 005096 199 NWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTD---LKFCSCSDDTTVKVWDFA--RCQEERSLT-----G 268 (715)
Q Consensus 199 ~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~---~~Las~s~Dg~V~iwdl~--~~~~~~~l~-----~ 268 (715)
.+|.+--..+.|.-||++.+........ ...+.++.+--.+ .+.+.++..-.|.-||.. .....+++. .
T Consensus 28 sLl~VDi~ag~v~r~D~~qn~v~ra~ie-~p~~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~d~ 106 (310)
T KOG4499|consen 28 SLLYVDIEAGEVHRYDIEQNKVYRAKIE-GPPSAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQPDR 106 (310)
T ss_pred eEEEEEeccCceehhhhhhhheEEEEEe-cCcceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccCchH
Confidence 4455555567777788887655443221 1223333332222 334444444445557732 222222211 1
Q ss_pred cCCceEEEEEcCCCCEEEEEeCC---------CcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEE-ECCCeEEE
Q 005096 269 HGWDVKSVDWHPTKSLLVSGGKD---------SLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTA-SKDQIIKL 338 (715)
Q Consensus 269 ~~~~I~si~~spdg~~L~sgs~D---------g~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasg-s~dg~I~i 338 (715)
.+...++-..+|+|++++-.-.| |.++.|-.. ..+..+...-..-+.++|+.+.+.++.. +.+-.|.-
T Consensus 107 kknR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~--h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a 184 (310)
T KOG4499|consen 107 KKNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAG--HQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDA 184 (310)
T ss_pred HhcccccCccCCCCceeeeeeccccccccccccEEEEeccC--CCceeeehhccCCccccccccCcEEEEEccCceEEee
Confidence 24456677789999985432222 344555432 1222222233334678899887766654 45667777
Q ss_pred EE--CCCCe-----EEEEeecC---C-CCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEc
Q 005096 339 YD--IRAMK-----ELESFRGH---R-KDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWH 407 (715)
Q Consensus 339 wD--l~t~~-----~~~~~~~h---~-~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s 407 (715)
|| ..++. .+..++.. + -.--.+++.. .+++++++-+.++|..+|..+++.+.++... ...|++++|-
T Consensus 185 ~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~-eG~L~Va~~ng~~V~~~dp~tGK~L~eiklP-t~qitsccFg 262 (310)
T KOG4499|consen 185 YDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDT-EGNLYVATFNGGTVQKVDPTTGKILLEIKLP-TPQITSCCFG 262 (310)
T ss_pred eecCCCcccccCcceeEEeccCCCcCCCCCCcceEcc-CCcEEEEEecCcEEEEECCCCCcEEEEEEcC-CCceEEEEec
Confidence 87 44443 33333321 1 1123344444 7888888888899999999999988877654 6789999996
Q ss_pred CC
Q 005096 408 PI 409 (715)
Q Consensus 408 pd 409 (715)
-.
T Consensus 263 Gk 264 (310)
T KOG4499|consen 263 GK 264 (310)
T ss_pred CC
Confidence 44
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.004 Score=72.83 Aligned_cols=101 Identities=11% Similarity=0.228 Sum_probs=74.2
Q ss_pred CCCEEEEEeCCCeEEEEeCCCC-ceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEE
Q 005096 155 TGRRLITGSQSGEFTLWNGQSF-NFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRD 233 (715)
Q Consensus 155 dg~~Latgs~dg~I~Iwd~~~~-~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~ 233 (715)
.+..++.|++.|.|.+.|.... +....-..-.+.|++++|+.||++++.|-.+|.|.+||+..++....+..+..+.+.
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~ 177 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTG 177 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccce
Confidence 4557889999999988886542 111112223578999999999999999999999999999999888887776665554
Q ss_pred E---EEecCCCEEEEEECCCcEEEEEC
Q 005096 234 L---SFCRTDLKFCSCSDDTTVKVWDF 257 (715)
Q Consensus 234 l---~~spd~~~Las~s~Dg~V~iwdl 257 (715)
+ .+..++..++++...|. +|.+
T Consensus 178 vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 178 VIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred EEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 4 44456667777777776 4543
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0041 Score=72.70 Aligned_cols=101 Identities=20% Similarity=0.231 Sum_probs=75.3
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCce-eeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceE-
Q 005096 197 NDNWMVSGDDGGAIKYWQNNMNNV-KANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVK- 274 (715)
Q Consensus 197 dg~~L~tgs~dg~I~iwd~~~~~~-~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~- 274 (715)
.+..++.|+..|.|...|+..+-. ...-......|++++|+.+|..++.|-.+|.|.+||+.+++..+.+..+....+
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~ 177 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTG 177 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccce
Confidence 456788888889998888765411 112233467899999999999999999999999999999988888877665544
Q ss_pred --EEEEcCCCCEEEEEeCCCcEEEEEC
Q 005096 275 --SVDWHPTKSLLVSGGKDSLVKLWDA 299 (715)
Q Consensus 275 --si~~spdg~~L~sgs~Dg~I~iwDl 299 (715)
.+.+..++..++++...|. +|.+
T Consensus 178 vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 178 VIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred EEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 4455556667888777775 4543
|
|
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0019 Score=71.49 Aligned_cols=94 Identities=17% Similarity=0.261 Sum_probs=81.8
Q ss_pred CCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeE-EEEEccCCCCEEEEEeCCCcEEEEEcCCCCce
Q 005096 312 KNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVT-ALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQ 390 (715)
Q Consensus 312 ~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~-~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~ 390 (715)
...|.-+.|+|.-.+||++..+|.|.+..+. +..+.++..+...++ +++|.+ ++++|++|-.||+|++.|+.++..+
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~-DGkllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRP-DGKLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecC-CCCEEEEEecCCeEEEEEccCCCce
Confidence 4457889999999999999999999999988 899999998888887 999999 7999999999999999999998877
Q ss_pred EEEeeccCCCEEEEEEc
Q 005096 391 VEIHNVHDNTVWDLAWH 407 (715)
Q Consensus 391 ~~~~~~h~~~V~~l~~s 407 (715)
......-...|.++-|.
T Consensus 98 ~~~~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 98 VSFLFSVETDISKGIWD 114 (665)
T ss_pred eccccccccchheeecc
Confidence 66444446678888886
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.19 Score=54.88 Aligned_cols=142 Identities=11% Similarity=0.096 Sum_probs=78.7
Q ss_pred CCEEEEEEcCCCCEEEEEe-----------CCC-cEEEEeCCC--Cc--eeeeecCCCCCeEEEEEecCCCEEEEEECCC
Q 005096 187 HAIRSMVWSHNDNWMVSGD-----------DGG-AIKYWQNNM--NN--VKANKSAHKESVRDLSFCRTDLKFCSCSDDT 250 (715)
Q Consensus 187 ~~V~~l~~spdg~~L~tgs-----------~dg-~I~iwd~~~--~~--~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg 250 (715)
.....|+|.++|+++++.. ..+ .|.+++-.. +. ....+.........|++.+++ |++++.+.
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~~ 91 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPPD 91 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCCe
Confidence 3456788888888776642 223 676665432 22 222333334456889998888 44444444
Q ss_pred cEEEEECCCC-----eeEEE---ecc----cCCceEEEEEcCCCCEEEEEeCC-------------------CcEEEEEC
Q 005096 251 TVKVWDFARC-----QEERS---LTG----HGWDVKSVDWHPTKSLLVSGGKD-------------------SLVKLWDA 299 (715)
Q Consensus 251 ~V~iwdl~~~-----~~~~~---l~~----~~~~I~si~~spdg~~L~sgs~D-------------------g~I~iwDl 299 (715)
.+++.|.+.. +.... +.. +......++|.+||++.++.+.. +.|..+|.
T Consensus 92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p 171 (367)
T TIGR02604 92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP 171 (367)
T ss_pred EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEec
Confidence 3334454221 21112 221 12347789999999876654421 34555565
Q ss_pred CCCceeEEeccCCCceEEEEEcCCCCEEEEEE
Q 005096 300 KSGRELCSFHGHKNMVLCVKWNQNGNWVLTAS 331 (715)
Q Consensus 300 ~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs 331 (715)
++++. ..+...-.....++|+++|+++++-.
T Consensus 172 dg~~~-e~~a~G~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 172 DGGKL-RVVAHGFQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred CCCeE-EEEecCcCCCccceECCCCCEEEEcc
Confidence 54443 23322234457899999998876644
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.083 Score=54.50 Aligned_cols=144 Identities=13% Similarity=0.129 Sum_probs=90.4
Q ss_pred cEEEEEEcCCCCEEEEEe---CCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEe-CCCCcee
Q 005096 146 SINRVLWTPTGRRLITGS---QSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQ-NNMNNVK 221 (715)
Q Consensus 146 ~I~~l~~spdg~~Latgs---~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd-~~~~~~~ 221 (715)
.+.+.++++|++.++... ....|+++.... ....+. ....+..-.|++++...++...+...+++. ...+...
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~--~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGG--PVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCC--cceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence 688999999999887766 334455555432 222221 234788889999977777766666667774 2333221
Q ss_pred -eeecC--CCCCeEEEEEecCCCEEEEEE---CCCcEEEEECC---CC------eeEEEecccCCceEEEEEcCCCCEEE
Q 005096 222 -ANKSA--HKESVRDLSFCRTDLKFCSCS---DDTTVKVWDFA---RC------QEERSLTGHGWDVKSVDWHPTKSLLV 286 (715)
Q Consensus 222 -~~~~~--h~~~I~~l~~spd~~~Las~s---~Dg~V~iwdl~---~~------~~~~~l~~~~~~I~si~~spdg~~L~ 286 (715)
..... ....|..+.+++||..++... .++.|.|--+. .+ ............+++++|..++.+++
T Consensus 102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V 181 (253)
T PF10647_consen 102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVV 181 (253)
T ss_pred eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEE
Confidence 11111 122899999999999987766 35677776552 22 01112223356789999999988777
Q ss_pred EEeCCC
Q 005096 287 SGGKDS 292 (715)
Q Consensus 287 sgs~Dg 292 (715)
.+...+
T Consensus 182 ~~~~~~ 187 (253)
T PF10647_consen 182 LGRSAG 187 (253)
T ss_pred EeCCCC
Confidence 665544
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.17 Score=52.25 Aligned_cols=144 Identities=14% Similarity=0.164 Sum_probs=89.4
Q ss_pred CeEEEEEecCCCEEEEEE---CCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEE-CCCCcee
Q 005096 230 SVRDLSFCRTDLKFCSCS---DDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWD-AKSGREL 305 (715)
Q Consensus 230 ~I~~l~~spd~~~Las~s---~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwD-l~s~~~~ 305 (715)
.+.+.+++++++.++... ....|+++.... ....+. ....+..-.|++++...++...+...+++. ..+++..
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~--~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGG--PVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCC--cceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence 688899999999887766 334555555433 223222 334788899999987777766666666663 3333222
Q ss_pred -EEecc--CCCceEEEEEcCCCCEEEEEE---CCCeEEEEECC---CC--eE----EEEeecCCCCeEEEEEccCCCCEE
Q 005096 306 -CSFHG--HKNMVLCVKWNQNGNWVLTAS---KDQIIKLYDIR---AM--KE----LESFRGHRKDVTALAWHPFHEEYF 370 (715)
Q Consensus 306 -~~~~~--~~~~I~sl~~spdg~~Lasgs---~dg~I~iwDl~---t~--~~----~~~~~~h~~~V~~l~~sp~~~~~l 370 (715)
..+.. ....|+++.+|+||..++... .++.|.|--+. .+ .. +.........++.++|.. +..++
T Consensus 102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~-~~~L~ 180 (253)
T PF10647_consen 102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSD-DSTLV 180 (253)
T ss_pred eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecC-CCEEE
Confidence 22221 122899999999999888766 34677766543 22 11 122223456899999998 56666
Q ss_pred EEEeCCC
Q 005096 371 VSGSLDG 377 (715)
Q Consensus 371 ~sgs~DG 377 (715)
+.+...+
T Consensus 181 V~~~~~~ 187 (253)
T PF10647_consen 181 VLGRSAG 187 (253)
T ss_pred EEeCCCC
Confidence 5554443
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.2 Score=53.95 Aligned_cols=151 Identities=10% Similarity=0.070 Sum_probs=85.3
Q ss_pred CCCeEEEEEecCCCEEEEEECCCcEEE-EECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeE
Q 005096 228 KESVRDLSFCRTDLKFCSCSDDTTVKV-WDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELC 306 (715)
Q Consensus 228 ~~~I~~l~~spd~~~Las~s~Dg~V~i-wdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~ 306 (715)
...+.++.+.+++.++++ +..|.+.. +|-....-..........++++.+.++++.++++ ..|.+++=+.+.++.-.
T Consensus 172 ~g~~~~i~~~~~g~~v~~-g~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW~ 249 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAV-SSRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESWS 249 (334)
T ss_pred cceEEEEEECCCCeEEEE-eCCceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCccc
Confidence 457888999888765544 44555443 2322111222223345678999999988876665 55766543344443322
Q ss_pred Eecc----CCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEee---cCCCCeEEEEEccCCCCEEEEEeCCCcE
Q 005096 307 SFHG----HKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFR---GHRKDVTALAWHPFHEEYFVSGSLDGSI 379 (715)
Q Consensus 307 ~~~~----~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~---~h~~~V~~l~~sp~~~~~l~sgs~DG~I 379 (715)
.... ....+.++.+.+++..++++ .+|.|. .....++.-.... .-....+.+.+.. +++. +..+..|.|
T Consensus 250 ~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~-~~~~-~~~G~~G~i 325 (334)
T PRK13684 250 KPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLD-PEKG-FVLGQRGVL 325 (334)
T ss_pred cccCCccccccceeeEEEcCCCCEEEEc-CCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeC-CCce-EEECCCceE
Confidence 2211 22357888998887755554 567554 3444444333332 2234577777774 4444 445668888
Q ss_pred EEEEc
Q 005096 380 FHWLV 384 (715)
Q Consensus 380 ~iwd~ 384 (715)
..|+-
T Consensus 326 l~~~~ 330 (334)
T PRK13684 326 LRYVG 330 (334)
T ss_pred EEecC
Confidence 87764
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.24 Score=53.34 Aligned_cols=232 Identities=15% Similarity=0.156 Sum_probs=118.6
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCce---eeee----cCCCCCeEEEEEecC---CCEEEEEECC--------
Q 005096 188 AIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNV---KANK----SAHKESVRDLSFCRT---DLKFCSCSDD-------- 249 (715)
Q Consensus 188 ~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~---~~~~----~~h~~~I~~l~~spd---~~~Las~s~D-------- 249 (715)
.-+.|+|.+|+++|++ ...|.|++++ ..+.. +..+ .........|+++++ +.+|++....
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 3578999999877665 5699999999 33332 1111 234456789999984 3444443331
Q ss_pred -CcEEEEECCCC-------eeE-EEecc---cCCceEEEEEcCCCCEEEEEeCCC-------------cEEEEECCCCc-
Q 005096 250 -TTVKVWDFARC-------QEE-RSLTG---HGWDVKSVDWHPTKSLLVSGGKDS-------------LVKLWDAKSGR- 303 (715)
Q Consensus 250 -g~V~iwdl~~~-------~~~-~~l~~---~~~~I~si~~spdg~~L~sgs~Dg-------------~I~iwDl~s~~- 303 (715)
..|.-|.+... +.+ ..+.. .......|+|.+|+.++++.++.+ .|.-.|.. ++
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~d-G~~ 159 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPD-GSI 159 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETT-SSB
T ss_pred ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEeccc-CcC
Confidence 23444544332 111 11111 234456799999998766665433 23333322 11
Q ss_pred ------------eeEEeccCCCceEEEEEcCC-CCEEEEE-ECCCeEEEEECCCCe------------------------
Q 005096 304 ------------ELCSFHGHKNMVLCVKWNQN-GNWVLTA-SKDQIIKLYDIRAMK------------------------ 345 (715)
Q Consensus 304 ------------~~~~~~~~~~~I~sl~~spd-g~~Lasg-s~dg~I~iwDl~t~~------------------------ 345 (715)
....+..--.....++|++. ++++++= +.|..=.|.-++.+.
T Consensus 160 p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~~~ 239 (331)
T PF07995_consen 160 PADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAPSC 239 (331)
T ss_dssp -TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGSS-
T ss_pred CCCCccccCCCceEEEEEeCCCccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccccCC
Confidence 00111111123467899998 6544432 222222222222211
Q ss_pred -----EEEEeecCCCCeEEEEEccC------CCCEEEEEeCCCcEEEEEcCCCCceEE---EeeccCCCEEEEEEcCCCC
Q 005096 346 -----ELESFRGHRKDVTALAWHPF------HEEYFVSGSLDGSIFHWLVGHETPQVE---IHNVHDNTVWDLAWHPIGY 411 (715)
Q Consensus 346 -----~~~~~~~h~~~V~~l~~sp~------~~~~l~sgs~DG~I~iwd~~~~~~~~~---~~~~h~~~V~~l~~spdg~ 411 (715)
.+..+. +...+..+.|... .+.+|++.-..+.|...+++....... +.......+.++++.+||.
T Consensus 240 ~~~~~P~~~~~-~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~ 318 (331)
T PF07995_consen 240 PGFVPPVFAYP-PHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGA 318 (331)
T ss_dssp TTS---SEEET-TT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSE
T ss_pred CCcCccceeec-CccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCe
Confidence 112222 3355667777642 234666665567788888765543322 2333444799999999999
Q ss_pred EEEEEECCCeEE
Q 005096 412 LLCSGSNDHTTK 423 (715)
Q Consensus 412 ~L~sgs~Dg~I~ 423 (715)
++++.+.+|.|.
T Consensus 319 Lyv~~d~~G~iy 330 (331)
T PF07995_consen 319 LYVSDDSDGKIY 330 (331)
T ss_dssp EEEEE-TTTTEE
T ss_pred EEEEECCCCeEe
Confidence 988888888774
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >COG1520 FOG: WD40-like repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.81 Score=50.00 Aligned_cols=194 Identities=13% Similarity=-0.005 Sum_probs=110.1
Q ss_pred CEEEEEeCCCcEEEEeCCCCceeeeecCCC--CCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccC-CceEE
Q 005096 199 NWMVSGDDGGAIKYWQNNMNNVKANKSAHK--ESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHG-WDVKS 275 (715)
Q Consensus 199 ~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~--~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~-~~I~s 275 (715)
..++++..+|.|.-.|.+++..+....... ..+.+-.+..+|+ |++++.++.++.+|.++++.+....... ..+..
T Consensus 69 g~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~ 147 (370)
T COG1520 69 GTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPYYAS 147 (370)
T ss_pred CeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCCCeEEec
Confidence 445556788888888888887654333221 2333333333555 8888889999999998888887776555 11222
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCC---CceEEEEEcCCCCEEEEEEC--CCeEEEEECCCCeEEEEe
Q 005096 276 VDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHK---NMVLCVKWNQNGNWVLTASK--DQIIKLYDIRAMKELESF 350 (715)
Q Consensus 276 i~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~---~~I~sl~~spdg~~Lasgs~--dg~I~iwDl~t~~~~~~~ 350 (715)
-.+..++ .++.++.++.+...|.++++.+..+.... ..+..-... ....++.+.. ++.+.-+|.+++..+...
T Consensus 148 ~~v~~~~-~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~-~~~~vy~~~~~~~~~~~a~~~~~G~~~w~~ 225 (370)
T COG1520 148 PPVVGDG-TVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAI-ASGTVYVGSDGYDGILYALNAEDGTLKWSQ 225 (370)
T ss_pred CcEEcCc-EEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCcee-ecceEEEecCCCcceEEEEEccCCcEeeee
Confidence 2222233 34444478999999999888877654322 111111111 2334555555 667788888888877664
Q ss_pred ecC----CCCeEEE-EEcc---CCCCEEEEEeCCCcEEEEEcCCCCceEEEee
Q 005096 351 RGH----RKDVTAL-AWHP---FHEEYFVSGSLDGSIFHWLVGHETPQVEIHN 395 (715)
Q Consensus 351 ~~h----~~~V~~l-~~sp---~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~ 395 (715)
+.+ ...+... .+.. .-+.-++.++.++.+...|..++..+.++..
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~ 278 (370)
T COG1520 226 KVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPA 278 (370)
T ss_pred eeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEec
Confidence 311 1111000 0000 0112235566677787788877776666554
|
|
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0069 Score=71.14 Aligned_cols=142 Identities=13% Similarity=0.079 Sum_probs=89.6
Q ss_pred CCEEEEEEcCCCCEEEE--EeCCCcEEEEeCCCCceee-----eec------CCCCCeEEEEEecCC-CEEEEEECCCcE
Q 005096 187 HAIRSMVWSHNDNWMVS--GDDGGAIKYWQNNMNNVKA-----NKS------AHKESVRDLSFCRTD-LKFCSCSDDTTV 252 (715)
Q Consensus 187 ~~V~~l~~spdg~~L~t--gs~dg~I~iwd~~~~~~~~-----~~~------~h~~~I~~l~~spd~-~~Las~s~Dg~V 252 (715)
-.|..+...+|....++ .+++-.|..||+++-.... -+. ....-..++.|.+.- ...+++..|+.|
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl 180 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL 180 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence 34555555667655543 3344578889987543221 111 122345567777643 235667788889
Q ss_pred EEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEecc----CCCceEEEEEcCCCCEEE
Q 005096 253 KVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHG----HKNMVLCVKWNQNGNWVL 328 (715)
Q Consensus 253 ~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~----~~~~I~sl~~spdg~~La 328 (715)
++..+........-......+++++|++.|+.+++|...|++.-|... .+....+.+ ....|.||+|.....+|+
T Consensus 181 ~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~eflv 259 (1405)
T KOG3630|consen 181 RVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQEFLV 259 (1405)
T ss_pred hhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecceeEEE
Confidence 888775433222222345678999999999999999999999988754 333333321 246799999998777766
Q ss_pred E
Q 005096 329 T 329 (715)
Q Consensus 329 s 329 (715)
+
T Consensus 260 v 260 (1405)
T KOG3630|consen 260 V 260 (1405)
T ss_pred E
Confidence 5
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.02 Score=65.86 Aligned_cols=184 Identities=10% Similarity=0.127 Sum_probs=87.6
Q ss_pred CCCEEEEEeCCC------eEEEEeCCCCceEEEEecc--CCCEEEEEEcCCCCEEEEEeCC-----CcEEEEeCCCCcee
Q 005096 155 TGRRLITGSQSG------EFTLWNGQSFNFEMILQAH--DHAIRSMVWSHNDNWMVSGDDG-----GAIKYWQNNMNNVK 221 (715)
Q Consensus 155 dg~~Latgs~dg------~I~Iwd~~~~~~~~~l~~h--~~~V~~l~~spdg~~L~tgs~d-----g~I~iwd~~~~~~~ 221 (715)
++..+++|+.++ .+..||..+.+....-... ......+. -++++++.|+.+ ..+..||..++.-.
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~--~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~ 371 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTV--FNNRIYVIGGIYNSISLNTVESWKPGESKWR 371 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEE--ECCEEEEEeCCCCCEecceEEEEcCCCCcee
Confidence 455666776542 5778887776543321111 11122222 256777778765 34677887765432
Q ss_pred eeecCCCCCeEEEEEecCCCEEEEEECC------CcEEEEECCCCeeEEE--ecccCCceEEEEEcCCCCEEEEEeCC--
Q 005096 222 ANKSAHKESVRDLSFCRTDLKFCSCSDD------TTVKVWDFARCQEERS--LTGHGWDVKSVDWHPTKSLLVSGGKD-- 291 (715)
Q Consensus 222 ~~~~~h~~~I~~l~~spd~~~Las~s~D------g~V~iwdl~~~~~~~~--l~~~~~~I~si~~spdg~~L~sgs~D-- 291 (715)
..-..........+..-+++.++.|+.+ ..+.+||..+.+-... +....... +++.. +++++++|+.+
T Consensus 372 ~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~-~~~~~-~~~iyv~GG~~~~ 449 (534)
T PHA03098 372 EEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGG-CAIYH-DGKIYVIGGISYI 449 (534)
T ss_pred eCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCc-eEEEE-CCEEEEECCccCC
Confidence 2111111111111122356666666632 4588899876433221 11111111 22222 46666666643
Q ss_pred ------CcEEEEECCCCceeEE--eccCCCceEEEEEcCCCCEEEEEECC-----CeEEEEECCCC
Q 005096 292 ------SLVKLWDAKSGRELCS--FHGHKNMVLCVKWNQNGNWVLTASKD-----QIIKLYDIRAM 344 (715)
Q Consensus 292 ------g~I~iwDl~s~~~~~~--~~~~~~~I~sl~~spdg~~Lasgs~d-----g~I~iwDl~t~ 344 (715)
..+.+||.++.+-... +.........+.+ ++++++.|+.+ ..|.+||.++.
T Consensus 450 ~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~ 513 (534)
T PHA03098 450 DNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTN 513 (534)
T ss_pred CCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCC
Confidence 2388889876543221 1111111122222 56666666643 35677776654
|
|
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.51 Score=52.78 Aligned_cols=148 Identities=11% Similarity=0.199 Sum_probs=88.1
Q ss_pred CccEEEEEEcCCCCEEE-EEe--CCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCC----CEEEEEeCCCcEEEEeCC
Q 005096 144 RCSINRVLWTPTGRRLI-TGS--QSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHND----NWMVSGDDGGAIKYWQNN 216 (715)
Q Consensus 144 ~~~I~~l~~spdg~~La-tgs--~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg----~~L~tgs~dg~I~iwd~~ 216 (715)
-.+|..++|. ||+.++ |.- .+|.+++=|. +.+ +.-+.|..+.|.+-+ -.|++.-....|.||.+.
T Consensus 19 iHPvhGlaWT-DGkqVvLT~L~l~~gE~kfGds---~vi----GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~ 90 (671)
T PF15390_consen 19 IHPVHGLAWT-DGKQVVLTDLQLHNGEPKFGDS---KVI----GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLC 90 (671)
T ss_pred hccccceEec-CCCEEEEEeeeeeCCccccCCc---cEe----eccceeeeeeecCcccCCCCceEEEeccceEEEEEec
Confidence 3578889998 555444 432 2343333221 122 333568899998853 244445567899999865
Q ss_pred C-----CceeeeecCC-CC----CeEEEEEecCCCEEEEEECCCcEEEEECC--CCeeEEEecccCCceEEEEEcCCCCE
Q 005096 217 M-----NNVKANKSAH-KE----SVRDLSFCRTDLKFCSCSDDTTVKVWDFA--RCQEERSLTGHGWDVKSVDWHPTKSL 284 (715)
Q Consensus 217 ~-----~~~~~~~~~h-~~----~I~~l~~spd~~~Las~s~Dg~V~iwdl~--~~~~~~~l~~~~~~I~si~~spdg~~ 284 (715)
. ++.......+ .+ --..+.|+|....|++-.....-.++++. +......+ ...+.|.|.+|..||++
T Consensus 91 ~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi-~~~G~IhCACWT~DG~R 169 (671)
T PF15390_consen 91 PSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADI-KTSGLIHCACWTKDGQR 169 (671)
T ss_pred cCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEec-cCCceEEEEEecCcCCE
Confidence 2 2222221111 11 12457899998888877766555556653 33333344 46678999999999998
Q ss_pred EEEEeC-CCcEEEEECC
Q 005096 285 LVSGGK-DSLVKLWDAK 300 (715)
Q Consensus 285 L~sgs~-Dg~I~iwDl~ 300 (715)
|+++-. .=.-+|||-.
T Consensus 170 LVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 170 LVVAVGSSLHSYIWDSA 186 (671)
T ss_pred EEEEeCCeEEEEEecCc
Confidence 776643 3356889854
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0032 Score=42.31 Aligned_cols=38 Identities=26% Similarity=0.598 Sum_probs=33.7
Q ss_pred ceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 005096 177 NFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQ 214 (715)
Q Consensus 177 ~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd 214 (715)
+.+..+..|...|.++.|.++++++++++.|+.|++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 45666778889999999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.85 E-value=1.1 Score=53.16 Aligned_cols=68 Identities=6% Similarity=0.143 Sum_probs=43.1
Q ss_pred CEEEEEeCCCeEEEEeCCCCceEEEE---eccCCCEEEEEEcCCC------CEEEEEeCCCcEEEEeCCCCceeeee
Q 005096 157 RRLITGSQSGEFTLWNGQSFNFEMIL---QAHDHAIRSMVWSHND------NWMVSGDDGGAIKYWQNNMNNVKANK 224 (715)
Q Consensus 157 ~~Latgs~dg~I~Iwd~~~~~~~~~l---~~h~~~V~~l~~spdg------~~L~tgs~dg~I~iwd~~~~~~~~~~ 224 (715)
+.|+.+.++|.+.-+..........+ ..-+..|.|+++.++. ++++.++.|+.++++.+.....+..+
T Consensus 550 ~qiVvalSngelvyfe~d~sgql~E~~er~tl~~~vac~ai~~~~~g~krsrfla~a~~d~~vriisL~p~d~l~~l 626 (1205)
T KOG1898|consen 550 RQIVVALSNGELVYFEGDVSGQLNEFTERVTLSTDVACLAIGQDPEGEKRSRFLALASVDNMVRIISLDPSDCLQPL 626 (1205)
T ss_pred eEEEEEccCCeEEEEEeccCccceeeeeeeeeceeehhhccCCCCcchhhcceeeeeccccceeEEEecCcceEEEc
Confidence 34566666666655554322222222 2234678889887754 57899999999999988765554443
|
|
| >smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2 | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.88 Score=48.23 Aligned_cols=228 Identities=10% Similarity=0.032 Sum_probs=110.6
Q ss_pred CCCEEEEEeCCCeEEEEeCCC--CceEEEEeccCCCEEEEEEcCCCCEEEEE-eCCCcEEEEeCCCCce-----------
Q 005096 155 TGRRLITGSQSGEFTLWNGQS--FNFEMILQAHDHAIRSMVWSHNDNWMVSG-DDGGAIKYWQNNMNNV----------- 220 (715)
Q Consensus 155 dg~~Latgs~dg~I~Iwd~~~--~~~~~~l~~h~~~V~~l~~spdg~~L~tg-s~dg~I~iwd~~~~~~----------- 220 (715)
++++|+.|+++| |++.|+.+ .+..+.+ +...|+++......+.|++- +....|+++++..-..
T Consensus 12 ~~~~lL~GTe~G-ly~~~~~~~~~~~~kl~--~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~ 88 (302)
T smart00036 12 DGKWLLVGTEEG-LYVLNISDQPGTLEKLI--GRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLV 88 (302)
T ss_pred CCcEEEEEeCCc-eEEEEcccCCCCeEEec--CcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCcccc
Confidence 346899999999 66666654 3344433 35689999998887776554 4444599998733221
Q ss_pred ----eeeecCCCCCeEEEEEecCCC-EEEEEECCCcEEEEECCCC----eeEEEe---c-ccCCceEEEEEcCC--CCEE
Q 005096 221 ----KANKSAHKESVRDLSFCRTDL-KFCSCSDDTTVKVWDFARC----QEERSL---T-GHGWDVKSVDWHPT--KSLL 285 (715)
Q Consensus 221 ----~~~~~~h~~~I~~l~~spd~~-~Las~s~Dg~V~iwdl~~~----~~~~~l---~-~~~~~I~si~~spd--g~~L 285 (715)
......+......+++..... .++++....+|.++...+. ...+.+ . -....+..+..+.+ ...|
T Consensus 89 ~~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~l 168 (302)
T smart00036 89 IRKNVLTKIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERPGI 168 (302)
T ss_pred ccccceEeCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccccceEE
Confidence 011122333334444443222 2344445566776644221 111110 0 01122223322322 4567
Q ss_pred EEEeCCCcEEEEECCC--Ccee----E-EeccCC-CceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEE-EEeecCCCC
Q 005096 286 VSGGKDSLVKLWDAKS--GREL----C-SFHGHK-NMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKEL-ESFRGHRKD 356 (715)
Q Consensus 286 ~sgs~Dg~I~iwDl~s--~~~~----~-~~~~~~-~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~-~~~~~h~~~ 356 (715)
++|+..+...++++.. .... . ...... ..+..+.+ .++.+|+ +. |....+.|....+.. ...-.....
T Consensus 169 cvG~~~~~~~~~~~~~~~~~~~d~sl~~~~~~~~~~p~~i~~l-~~~e~Ll-c~-~~~~v~Vn~~G~~~~r~~~l~w~~~ 245 (302)
T smart00036 169 CIGSDKGGGDVVQFHESLVSKEDLSLPFLSEETSLKPISVVQV-PRDEFLL-CY-DEFGVFVNLYGKRRSRNPILHWEFM 245 (302)
T ss_pred EEEEcCCCCeEEEEeecccccccccccccccccccCceEEEEE-CCCeEEE-EE-CcEEEEEeCCCCccccceEEEcCCc
Confidence 7777653355555532 1100 0 011111 23333333 3444444 33 344555565531221 111224556
Q ss_pred eEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEE
Q 005096 357 VTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVE 392 (715)
Q Consensus 357 V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~ 392 (715)
..++++. ..+|++-. +..|.|+++.++.....
T Consensus 246 p~~~~~~---~pyll~~~-~~~ievr~l~~~~l~q~ 277 (302)
T smart00036 246 PESFAYH---SPYLLAFH-DNGIEIRSIKTGELLQE 277 (302)
T ss_pred ccEEEEE---CCEEEEEc-CCcEEEEECCCCceEEE
Confidence 6777775 35555554 44699999988754333
|
Unpublished observations. |
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=96.81 E-value=1.1 Score=49.18 Aligned_cols=145 Identities=8% Similarity=0.108 Sum_probs=79.3
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCce--eEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCe-----
Q 005096 273 VKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRE--LCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMK----- 345 (715)
Q Consensus 273 I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~--~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~----- 345 (715)
...+..++|+.+++++.....++-||- +.. ...-......++++.|..++.+++++ .+|.|.+ ....++
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~--G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~~-S~d~G~~~~~~ 316 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEP--GQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLYV-SKGTGLTEEDF 316 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCC--CCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEEE-ecCCCCccccc
Confidence 344566777777666654333333443 221 11122235568999999998877666 5666543 333343
Q ss_pred EEEEeec--CCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEe--eccCCCEEEEEEcCCCCEEEEEECCCe
Q 005096 346 ELESFRG--HRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIH--NVHDNTVWDLAWHPIGYLLCSGSNDHT 421 (715)
Q Consensus 346 ~~~~~~~--h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~--~~h~~~V~~l~~spdg~~L~sgs~Dg~ 421 (715)
.+..... ....+.++.+.. ++. ++.++.+|.|.+..- .++.-.... ..-...++.+.|..+++.++ .+.+|.
T Consensus 317 ~f~~~~~~~~~~~l~~v~~~~-d~~-~~a~G~~G~v~~s~D-~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~-~G~~G~ 392 (398)
T PLN00033 317 DFEEADIKSRGFGILDVGYRS-KKE-AWAAGGSGILLRSTD-GGKSWKRDKGADNIAANLYSVKFFDDKKGFV-LGNDGV 392 (398)
T ss_pred ceeecccCCCCcceEEEEEcC-CCc-EEEEECCCcEEEeCC-CCcceeEccccCCCCcceeEEEEcCCCceEE-EeCCcE
Confidence 2222222 223588888885 444 455566787766542 222211211 12234678999887665554 456888
Q ss_pred EEEE
Q 005096 422 TKFW 425 (715)
Q Consensus 422 I~iW 425 (715)
|.-|
T Consensus 393 il~~ 396 (398)
T PLN00033 393 LLRY 396 (398)
T ss_pred EEEe
Confidence 7665
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0036 Score=42.06 Aligned_cols=38 Identities=34% Similarity=0.589 Sum_probs=33.1
Q ss_pred ceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEE
Q 005096 303 RELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYD 340 (715)
Q Consensus 303 ~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwD 340 (715)
+.+..+..+...|.++.|+++++++++++.|+.|++||
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 44556667888999999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.093 Score=58.06 Aligned_cols=271 Identities=11% Similarity=0.026 Sum_probs=140.5
Q ss_pred CCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccC-CCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcee
Q 005096 143 NRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHD-HAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVK 221 (715)
Q Consensus 143 H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~-~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~ 221 (715)
-..+|.++.+.-+| .|.+|+.|| +..||..+++....-.... ..|..+..+-.+ .|.+|+.+| |++.+.+..+..
T Consensus 163 ~d~~V~aLv~D~~g-~lWvgT~dG-L~~fd~~~gkalql~s~~~dk~I~al~~d~qg-~LWVGTdqG-v~~~e~~G~~~s 238 (671)
T COG3292 163 KDTPVVALVFDANG-RLWVGTPDG-LSYFDAGRGKALQLASPPLDKAINALIADVQG-RLWVGTDQG-VYLQEAEGWRAS 238 (671)
T ss_pred cCccceeeeeeccC-cEEEecCCc-ceEEccccceEEEcCCCcchhhHHHHHHHhcC-cEEEEeccc-eEEEchhhcccc
Confidence 34578888888888 578888888 7888888877666544433 566666655455 456676665 566655542222
Q ss_pred eee-cCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEE-ecc--cCCceEEEEEcCCCCEEEEEeCCCcEEEE
Q 005096 222 ANK-SAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERS-LTG--HGWDVKSVDWHPTKSLLVSGGKDSLVKLW 297 (715)
Q Consensus 222 ~~~-~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~-l~~--~~~~I~si~~spdg~~L~sgs~Dg~I~iw 297 (715)
... ......|..+.-..++ .+-.|+.+|..+ ..+.+...... .+. .-..|.++..+.+|+ |.+++.++.+++-
T Consensus 239 n~~~~lp~~~I~ll~qD~qG-~lWiGTenGl~r-~~l~rq~Lq~~~~~~~l~~S~vnsL~~D~dGs-LWv~t~~giv~~~ 315 (671)
T COG3292 239 NWGPMLPSGNILLLVQDAQG-ELWIGTENGLWR-TRLPRQGLQIPLSKMHLGVSTVNSLWLDTDGS-LWVGTYGGIVRYL 315 (671)
T ss_pred ccCCCCcchheeeeecccCC-CEEEeeccccee-EecCCCCccccccccCCccccccceeeccCCC-EeeeccCceEEEe
Confidence 111 1123344444433333 355566655433 23332222111 111 123566777776776 6667777766654
Q ss_pred ECCCCceeEEeccCCCc---eEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeec-CCCCeEEEEEccCCCCEEEEE
Q 005096 298 DAKSGRELCSFHGHKNM---VLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRG-HRKDVTALAWHPFHEEYFVSG 373 (715)
Q Consensus 298 Dl~s~~~~~~~~~~~~~---I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~-h~~~V~~l~~sp~~~~~l~sg 373 (715)
+.. .+....+...++. ...++..-.+..+-.....|.+.+-+-.++..+..... ....|+.+++.. ++.+ ..+
T Consensus 316 ~a~-w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns~g~L~van~stG~~v~sv~q~Rg~nit~~~~d~-~g~l-Wlg 392 (671)
T COG3292 316 TAD-WKRMAVINDSDGGVSQYEAVAPALLSWGVRQLNSIGELMVANGSTGELVRSVHQLRGMNITTTLEDS-RGRL-WLG 392 (671)
T ss_pred cch-hhheeeeecCCCchhhhhccCchhcccceeeccccceEEEecCCCCcEEEEeeeccccccchhhhcc-CCcE-EEE
Confidence 432 2222222211111 11111111222233333344455555556665554332 234566666665 4444 344
Q ss_pred eCCCcEEEEEcCC-CCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEE
Q 005096 374 SLDGSIFHWLVGH-ETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKF 424 (715)
Q Consensus 374 s~DG~I~iwd~~~-~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~i 424 (715)
+...-+..|+.++ .....+......+.|..+.=.++++ |..|+.+|.++.
T Consensus 393 s~q~GLsrl~n~n~~avlde~agl~ss~V~aived~dns-LWIGTs~Glvk~ 443 (671)
T COG3292 393 SMQNGLSRLDNKNEWAVLDEDAGLPSSEVSAIVEDPDNS-LWIGTSGGLVKR 443 (671)
T ss_pred ecccchhhhccCCcccccccccCCcccceeeeeecCCCC-EEEeccCCeEec
Confidence 4443444566655 2222222223456788888888887 888888887654
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.54 Score=51.36 Aligned_cols=142 Identities=5% Similarity=0.033 Sum_probs=80.7
Q ss_pred ccEEEEEEcCCCCEEEEEe-----------CCC-eEEEEeCCC--Cce--EEEEeccCCCEEEEEEcCCCCEEEEEeCCC
Q 005096 145 CSINRVLWTPTGRRLITGS-----------QSG-EFTLWNGQS--FNF--EMILQAHDHAIRSMVWSHNDNWMVSGDDGG 208 (715)
Q Consensus 145 ~~I~~l~~spdg~~Latgs-----------~dg-~I~Iwd~~~--~~~--~~~l~~h~~~V~~l~~spdg~~L~tgs~dg 208 (715)
.....|+|.++|+++++-. ..+ .|.+++-.+ ++. ...+...-...+.|++.+++ |++++...
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~~ 91 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPPD 91 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCCe
Confidence 4467899999998776643 223 677776432 332 23343334456789998887 44444444
Q ss_pred cEEEEeCCCC-----ce--e-eeecC----CCCCeEEEEEecCCCEEEEEECC-------------------CcEEEEEC
Q 005096 209 AIKYWQNNMN-----NV--K-ANKSA----HKESVRDLSFCRTDLKFCSCSDD-------------------TTVKVWDF 257 (715)
Q Consensus 209 ~I~iwd~~~~-----~~--~-~~~~~----h~~~I~~l~~spd~~~Las~s~D-------------------g~V~iwdl 257 (715)
.+++.|.+.. +. + ..+.. +......++|.+|+.+.++.+.. +.|..+|.
T Consensus 92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p 171 (367)
T TIGR02604 92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP 171 (367)
T ss_pred EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEec
Confidence 3334444321 11 1 11211 13447789999998876654421 34555665
Q ss_pred CCCeeEEEecccCCceEEEEEcCCCCEEEEEe
Q 005096 258 ARCQEERSLTGHGWDVKSVDWHPTKSLLVSGG 289 (715)
Q Consensus 258 ~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs 289 (715)
...+.. .+.........++|+++++++++-.
T Consensus 172 dg~~~e-~~a~G~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 172 DGGKLR-VVAHGFQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred CCCeEE-EEecCcCCCccceECCCCCEEEEcc
Confidence 554433 3332234456899999998876644
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.8 Score=50.37 Aligned_cols=146 Identities=8% Similarity=0.054 Sum_probs=80.2
Q ss_pred eEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCc-----ee
Q 005096 231 VRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGR-----EL 305 (715)
Q Consensus 231 I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~-----~~ 305 (715)
...+..++|+.+++.+.....++-||-....-...-......+.++.|..++.+++++ .+|.|. |....++ ..
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~-~S~d~G~~~~~~~f 318 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLY-VSKGTGLTEEDFDF 318 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEE-EecCCCCcccccce
Confidence 3445556676666655544434445432211011122334568899999888877655 556553 3333343 22
Q ss_pred EEecc--CCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEee---cCCCCeEEEEEccCCCCEEEEEeCCCcEE
Q 005096 306 CSFHG--HKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFR---GHRKDVTALAWHPFHEEYFVSGSLDGSIF 380 (715)
Q Consensus 306 ~~~~~--~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~---~h~~~V~~l~~sp~~~~~l~sgs~DG~I~ 380 (715)
..... ....+.++.|..++..+++| .+|.|.+.. ..++.-.... .-...++.+.|.. +++. .+.+.+|.|.
T Consensus 319 ~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~-~~~g-~~~G~~G~il 394 (398)
T PLN00033 319 EEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFD-DKKG-FVLGNDGVLL 394 (398)
T ss_pred eecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcC-CCce-EEEeCCcEEE
Confidence 22221 22358899999887765555 577665543 4444433322 3345688899875 3444 4445678876
Q ss_pred EE
Q 005096 381 HW 382 (715)
Q Consensus 381 iw 382 (715)
.|
T Consensus 395 ~~ 396 (398)
T PLN00033 395 RY 396 (398)
T ss_pred Ee
Confidence 65
|
|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.36 Score=56.96 Aligned_cols=94 Identities=15% Similarity=0.214 Sum_probs=55.2
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC-ceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEE
Q 005096 187 HAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN-NVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERS 265 (715)
Q Consensus 187 ~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~-~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~ 265 (715)
..|..|.++++|++|+..+..|. .|..+-.. .....+.+....|.|-.+.-+..++
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v-~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~---------------------- 141 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGV-VVLELPRRWGKNGEFEDGKKEINCRTVPVDERFF---------------------- 141 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcE-EEEEeccccCccccccCCCcceeEEEEEechhhc----------------------
Confidence 46888999999999988877554 44433221 1111222223333332222111111
Q ss_pred ecccCCceEEEEEcCC---CCEEEEEeCCCcEEEEECCCCc
Q 005096 266 LTGHGWDVKSVDWHPT---KSLLVSGGKDSLVKLWDAKSGR 303 (715)
Q Consensus 266 l~~~~~~I~si~~spd---g~~L~sgs~Dg~I~iwDl~s~~ 303 (715)
.......|..+.|+|. +..|++-+.|++||+||+....
T Consensus 142 ~~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 142 TSNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred cCCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCCC
Confidence 1123456888999986 4688888899999999997543
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >PRK05560 DNA gyrase subunit A; Validated | Back alignment and domain information |
|---|
Probab=96.70 E-value=1.4 Score=52.96 Aligned_cols=232 Identities=9% Similarity=0.012 Sum_probs=124.0
Q ss_pred EEcCCCCEEEEEeCCCeEEEEeCCCCce-------E--EEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC---CCC
Q 005096 151 LWTPTGRRLITGSQSGEFTLWNGQSFNF-------E--MILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQN---NMN 218 (715)
Q Consensus 151 ~~spdg~~Latgs~dg~I~Iwd~~~~~~-------~--~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~---~~~ 218 (715)
.+-++...+++-+.+|.|+.-++.+... . ..++. ...+..+......+.|+..+..|.+..... ...
T Consensus 493 dlI~~E~v~vllS~~GyIKri~~~~~~~~~~~~~g~~~~klKe-~D~l~~~~~~~t~d~LllfTs~Grv~~l~v~~iP~~ 571 (805)
T PRK05560 493 DLIPEEDVVVTLTHGGYIKRTPLDEYRAQRRGGKGVSGAKTKE-DDFVEHLFVASTHDTLLFFTNRGRVYRLKVYEIPEA 571 (805)
T ss_pred hccCCCCEEEEEeCCCEEEEcchhhhhhhcccCCCccccccCC-CCeeEEEEEecCCCeEEEEecCCeEEEEEhhhCcCC
Confidence 4455777899999999999886554321 1 11122 233444444445555666666777766543 221
Q ss_pred ------cee---eeecCCCCCeEEEEEec--CCCEEEEEECCCcEEEEECCCCe-------eEEEecccCCceEEEEEcC
Q 005096 219 ------NVK---ANKSAHKESVRDLSFCR--TDLKFCSCSDDTTVKVWDFARCQ-------EERSLTGHGWDVKSVDWHP 280 (715)
Q Consensus 219 ------~~~---~~~~~h~~~I~~l~~sp--d~~~Las~s~Dg~V~iwdl~~~~-------~~~~l~~~~~~I~si~~sp 280 (715)
..+ ..+.....-|.++.+.. +..+++..+.+|.|+..++.... ....+.. .+.+..+....
T Consensus 572 ~~~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~e~~lvlvTk~GyiKRi~l~~~~~~~r~G~~~ikLke-~D~lv~v~~~~ 650 (805)
T PRK05560 572 SRTARGRPIVNLLPLEPGEKITAILPVREFDDDKYLFFATKNGTVKKTSLSEFSNIRSNGIIAINLDE-GDELIGVRLTD 650 (805)
T ss_pred CcCCCCeEHHHhcCCCCCceEEEEEeccCCCCCCEEEEEeCCCEEEEEEhHHhhhcccCCceeeccCC-CCEEEEEEEeC
Confidence 111 11222223344444442 56789999999999988764322 2223332 34444444444
Q ss_pred CCCEEEEEeCCCcEEEEECCC---------CceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCC-------
Q 005096 281 TKSLLVSGGKDSLVKLWDAKS---------GRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAM------- 344 (715)
Q Consensus 281 dg~~L~sgs~Dg~I~iwDl~s---------~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~------- 344 (715)
....|+..+..|.+..+.+.. |..+..+.....-+..+.+..+..+|+..+..|.++..++...
T Consensus 651 ~~d~lll~T~~Gr~~r~~~~eIp~~gr~~~Gv~~i~L~~~E~Vv~~~~v~~~~~~il~vTk~G~iKr~~l~e~~~~~R~~ 730 (805)
T PRK05560 651 GDDDILLATKNGKAIRFPESDVRPMGRTARGVRGIKLREGDEVVSMDVVREDSQEILTVTENGYGKRTPVSEYRLQGRGG 730 (805)
T ss_pred CCCEEEEEECCCcEEEEEhhhcCccCcccCCcccccCCCCCEEEEEEEEcCCCcEEEEEEeCCeEEEEEHHHhhccCCCC
Confidence 555677777778777665432 2222333322223344444444447888888998887765321
Q ss_pred --eEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcC
Q 005096 345 --KELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVG 385 (715)
Q Consensus 345 --~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~ 385 (715)
.....+......+..+.... ++..++..+.+|.+..++..
T Consensus 731 kG~~~lkl~~~~d~lv~v~~v~-~~~~v~i~T~~G~~lrf~~~ 772 (805)
T PRK05560 731 KGVITIKITEKNGKLVGALPVD-DDDEIMLITDSGKLIRTRVS 772 (805)
T ss_pred CcEEeeeccCCCCeEEEEEEec-CCCeEEEEecCCeEEEEEHH
Confidence 12222222233444433333 34446666777887777664
|
|
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.048 Score=60.52 Aligned_cols=148 Identities=14% Similarity=0.208 Sum_probs=93.5
Q ss_pred CceEEEEEcCCCCEEEEEe---CCCcEEEEECCCCceeEEeccCCCceEEEEEcCC----CCEEEEEECCCeEEEEECC-
Q 005096 271 WDVKSVDWHPTKSLLVSGG---KDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQN----GNWVLTASKDQIIKLYDIR- 342 (715)
Q Consensus 271 ~~I~si~~spdg~~L~sgs---~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spd----g~~Lasgs~dg~I~iwDl~- 342 (715)
..|..++|. ||+.++... .+|.+++=| .+.+..| ..|..++|.|- .-.|++.-....|.||-+.
T Consensus 20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfGd---s~viGqF----EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~ 91 (671)
T PF15390_consen 20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFGD---SKVIGQF----EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP 91 (671)
T ss_pred ccccceEec-CCCEEEEEeeeeeCCccccCC---ccEeecc----ceeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence 367889998 666444332 344444333 2233333 34889999883 3245555568899999875
Q ss_pred ----CCeEEEEeecCCC-----CeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEE
Q 005096 343 ----AMKELESFRGHRK-----DVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLL 413 (715)
Q Consensus 343 ----t~~~~~~~~~h~~-----~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L 413 (715)
+.+.+..-.++-+ --..+.|+| ...+|++-.....-.++++......++......+.|.|.+|..||..|
T Consensus 92 s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHP-k~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RL 170 (671)
T PF15390_consen 92 STTERNKLLMSQTCEIREPFPVLPQGCVWHP-KKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRL 170 (671)
T ss_pred CccccccceeeeeeeccCCcccCCCcccccC-CCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEE
Confidence 2333332222211 124678999 777777777666666788877777666655668899999999999777
Q ss_pred EEEE-CCCeEEEEec
Q 005096 414 CSGS-NDHTTKFWCR 427 (715)
Q Consensus 414 ~sgs-~Dg~I~iWdl 427 (715)
+++- ..=.-+|||-
T Consensus 171 VVAvGSsLHSyiWd~ 185 (671)
T PF15390_consen 171 VVAVGSSLHSYIWDS 185 (671)
T ss_pred EEEeCCeEEEEEecC
Confidence 6654 3334567764
|
|
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.00026 Score=80.62 Aligned_cols=215 Identities=17% Similarity=0.218 Sum_probs=115.5
Q ss_pred EecCCCCccEEEEEEcCCC-CEEEEEeCCCeEEEEeCCC--CceEEE-----EeccCCCEEEEEEcC---CCCEEEEEeC
Q 005096 138 TSLNKNRCSINRVLWTPTG-RRLITGSQSGEFTLWNGQS--FNFEMI-----LQAHDHAIRSMVWSH---NDNWMVSGDD 206 (715)
Q Consensus 138 ~~l~~H~~~I~~l~~spdg-~~Latgs~dg~I~Iwd~~~--~~~~~~-----l~~h~~~V~~l~~sp---dg~~L~tgs~ 206 (715)
..+++..+.|..|.|-... ..++ ..-|.+.|||++- +++... .......+.-|.|.+ +..++..+..
T Consensus 126 ~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~ 203 (1283)
T KOG1916|consen 126 ELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLK 203 (1283)
T ss_pred HHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccC
Confidence 3456788888888885422 2222 3346788998653 433222 222334445555544 5677778888
Q ss_pred CCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEE
Q 005096 207 GGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLV 286 (715)
Q Consensus 207 dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~ 286 (715)
++.|++.+++.... ..+..|...+.+++|...|-.++.+ +++||..|+
T Consensus 204 ~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~-------------------------------lSpDGtv~a 251 (1283)
T KOG1916|consen 204 GGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLAS-------------------------------LSPDGTVFA 251 (1283)
T ss_pred CCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhhee-------------------------------eCCCCcEEE
Confidence 88988887765443 3344588777777765443221111 567777777
Q ss_pred EEeCCCcEEEEEC-----CCCceeEEeccCC-CceEEEEEcCC-------CC--EEEEEE-CCCeEEEEECCCCeEEEEe
Q 005096 287 SGGKDSLVKLWDA-----KSGRELCSFHGHK-NMVLCVKWNQN-------GN--WVLTAS-KDQIIKLYDIRAMKELESF 350 (715)
Q Consensus 287 sgs~Dg~I~iwDl-----~s~~~~~~~~~~~-~~I~sl~~spd-------g~--~Lasgs-~dg~I~iwDl~t~~~~~~~ 350 (715)
+++.||.++.|.+ +.-+|+..++.|+ ..-.|.-|+.+ +. ++++++ .+..+++|....++|+..+
T Consensus 252 ~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cll~~ 331 (1283)
T KOG1916|consen 252 WAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCLLDK 331 (1283)
T ss_pred EeecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhhhhh
Confidence 7777776666543 2334455555555 22222223322 11 233333 4557889988877776221
Q ss_pred --------ecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCC
Q 005096 351 --------RGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGH 386 (715)
Q Consensus 351 --------~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~ 386 (715)
..|+..|+.+..+..--..+++-+-++.|.+|.-+.
T Consensus 332 ~~d~v~iV~p~~~~v~~~~~~~~~~~~~v~r~v~~~i~~~qn~~ 375 (1283)
T KOG1916|consen 332 LIDGVQIVGPHDGEVTDLSMCQWMTTRLVSRSVDGTIKIWQNRK 375 (1283)
T ss_pred cccceEeecCCCccccchhhhHHHHHHHHHhhhHHHHHHhhcch
Confidence 122223322211100011234456678888886544
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.55 Score=50.49 Aligned_cols=230 Identities=12% Similarity=0.178 Sum_probs=115.6
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce---EEEE----eccCCCEEEEEEcCC---CCEEEEEeC-C--------
Q 005096 147 INRVLWTPTGRRLITGSQSGEFTLWNGQSFNF---EMIL----QAHDHAIRSMVWSHN---DNWMVSGDD-G-------- 207 (715)
Q Consensus 147 I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~---~~~l----~~h~~~V~~l~~spd---g~~L~tgs~-d-------- 207 (715)
-++|+|.|||++|+ +...|.|++++ .++.. +..+ .........++++++ ..+|++... .
T Consensus 4 P~~~a~~pdG~l~v-~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~ 81 (331)
T PF07995_consen 4 PRSMAFLPDGRLLV-AERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND 81 (331)
T ss_dssp EEEEEEETTSCEEE-EETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred ceEEEEeCCCcEEE-EeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence 57899999987655 56699999999 33333 2222 123467899999984 344443322 1
Q ss_pred CcEEEEeCCCC-------c-eeeeec---CCCCCeEEEEEecCCCEEEEEECCC-------------cEEEEECCCCe--
Q 005096 208 GAIKYWQNNMN-------N-VKANKS---AHKESVRDLSFCRTDLKFCSCSDDT-------------TVKVWDFARCQ-- 261 (715)
Q Consensus 208 g~I~iwd~~~~-------~-~~~~~~---~h~~~I~~l~~spd~~~Las~s~Dg-------------~V~iwdl~~~~-- 261 (715)
..|.-|.+... + ++..+. ........|+|.+|+.++++.+..+ .|.-.|....-
T Consensus 82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~~p~ 161 (331)
T PF07995_consen 82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGSIPA 161 (331)
T ss_dssp EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSSB-T
T ss_pred eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEecccCcCCC
Confidence 23333433322 1 111111 2334556799999997666655432 23333322110
Q ss_pred ----------eEEEecccCCceEEEEEcCC-CCEEEEE-eCCCcEEEEECCCCc--------------------------
Q 005096 262 ----------EERSLTGHGWDVKSVDWHPT-KSLLVSG-GKDSLVKLWDAKSGR-------------------------- 303 (715)
Q Consensus 262 ----------~~~~l~~~~~~I~si~~spd-g~~L~sg-s~Dg~I~iwDl~s~~-------------------------- 303 (715)
....+..--.....++|++. ++++++- +.|..=.|.-++.+.
T Consensus 162 dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~~~~~ 241 (331)
T PF07995_consen 162 DNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAPSCPG 241 (331)
T ss_dssp TSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGSS-TT
T ss_pred CCccccCCCceEEEEEeCCCccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccccCCCC
Confidence 00111111123457899998 5544332 222222222121111
Q ss_pred ---eeEEeccCCCceEEEEEcC-------CCCEEEEEECCCeEEEEECCCCeEEEE----eecCCCCeEEEEEccCCCCE
Q 005096 304 ---ELCSFHGHKNMVLCVKWNQ-------NGNWVLTASKDQIIKLYDIRAMKELES----FRGHRKDVTALAWHPFHEEY 369 (715)
Q Consensus 304 ---~~~~~~~~~~~I~sl~~sp-------dg~~Lasgs~dg~I~iwDl~t~~~~~~----~~~h~~~V~~l~~sp~~~~~ 369 (715)
.+..+.. ...+..+.|.. ++.+|++....+.|...+++....+.. +......+..|++.+ ++.+
T Consensus 242 ~~~P~~~~~~-~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~p-DG~L 319 (331)
T PF07995_consen 242 FVPPVFAYPP-HSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGP-DGAL 319 (331)
T ss_dssp S---SEEETT-T--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEET-TSEE
T ss_pred cCccceeecC-ccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcC-CCeE
Confidence 1222332 24466666653 345666665667888888875543322 223444789999999 7777
Q ss_pred EEEEeCCCcEE
Q 005096 370 FVSGSLDGSIF 380 (715)
Q Consensus 370 l~sgs~DG~I~ 380 (715)
+++.+.+|.|+
T Consensus 320 yv~~d~~G~iy 330 (331)
T PF07995_consen 320 YVSDDSDGKIY 330 (331)
T ss_dssp EEEE-TTTTEE
T ss_pred EEEECCCCeEe
Confidence 77777788774
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.054 Score=62.37 Aligned_cols=184 Identities=12% Similarity=0.084 Sum_probs=86.1
Q ss_pred CCCEEEEEeCCC------cEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECC-----CcEEEEECCCCeeEE-
Q 005096 197 NDNWMVSGDDGG------AIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDD-----TTVKVWDFARCQEER- 264 (715)
Q Consensus 197 dg~~L~tgs~dg------~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~D-----g~V~iwdl~~~~~~~- 264 (715)
++.+++.|+.++ .+..||..+++....-.............-+++.++.|+.+ ..+.+||..+.+-..
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~ 373 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREE 373 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeC
Confidence 456667776542 46778877665432211111111111122356677777765 347778876543221
Q ss_pred -EecccCCceEEEEEcCCCCEEEEEeCC------CcEEEEECCCCceeEE--eccCCCceEEEEEcCCCCEEEEEECC--
Q 005096 265 -SLTGHGWDVKSVDWHPTKSLLVSGGKD------SLVKLWDAKSGRELCS--FHGHKNMVLCVKWNQNGNWVLTASKD-- 333 (715)
Q Consensus 265 -~l~~~~~~I~si~~spdg~~L~sgs~D------g~I~iwDl~s~~~~~~--~~~~~~~I~sl~~spdg~~Lasgs~d-- 333 (715)
.+....... +++. -++++++.|+.+ ..+.+||..+.+-... +...... .+++. -+++++++|+.+
T Consensus 374 ~~lp~~r~~~-~~~~-~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~-~~~~~-~~~~iyv~GG~~~~ 449 (534)
T PHA03098 374 PPLIFPRYNP-CVVN-VNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYG-GCAIY-HDGKIYVIGGISYI 449 (534)
T ss_pred CCcCcCCccc-eEEE-ECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccC-ceEEE-ECCEEEEECCccCC
Confidence 111111111 2222 246677777632 3578899876542211 1111111 12222 255666666532
Q ss_pred ------CeEEEEECCCCeEEE--EeecCCCCeEEEEEccCCCCEEEEEeCC-----CcEEEEEcCCC
Q 005096 334 ------QIIKLYDIRAMKELE--SFRGHRKDVTALAWHPFHEEYFVSGSLD-----GSIFHWLVGHE 387 (715)
Q Consensus 334 ------g~I~iwDl~t~~~~~--~~~~h~~~V~~l~~sp~~~~~l~sgs~D-----G~I~iwd~~~~ 387 (715)
..+.+||.++.+-.. .+.........+.+ ++.+++.|+.+ ..|.+||.++.
T Consensus 450 ~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~v~~yd~~~~ 513 (534)
T PHA03098 450 DNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF---NNKIYVVGGDKYEYYINEIEVYDDKTN 513 (534)
T ss_pred CCCcccceEEEecCCCCceeeCCCCCcccccceEEEE---CCEEEEEcCCcCCcccceeEEEeCCCC
Confidence 238888987654322 12111111122222 56666666654 34666665543
|
|
| >COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.60 E-value=1.3 Score=52.12 Aligned_cols=284 Identities=14% Similarity=0.143 Sum_probs=144.2
Q ss_pred ecCCCCccEEEEEEcCCCCEEEEEeCCCe----EEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEe------CCC
Q 005096 139 SLNKNRCSINRVLWTPTGRRLITGSQSGE----FTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGD------DGG 208 (715)
Q Consensus 139 ~l~~H~~~I~~l~~spdg~~Latgs~dg~----I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs------~dg 208 (715)
....+...+.++.|+++|..++..+.++. +++.+.. + .+..+...|....|+++++.++... .++
T Consensus 54 ~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~l~l~~~~-g----~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~~~ 128 (620)
T COG1506 54 RLLTFGGGVSELRWSPDGSVLAFVSTDGGRVAQLYLVDVG-G----LITKTAFGVSDARWSPDGDRIAFLTAEGASKRDG 128 (620)
T ss_pred cccccCCcccccccCCCCCEEEEEeccCCCcceEEEEecC-C----ceeeeecccccceeCCCCCeEEEEecccccccCC
Confidence 45567788999999999999998874432 3333433 2 3445566788888999888776621 122
Q ss_pred c-------EEEEeCCCC-c-----------eeeeecCCCCCeEEEEEecCCCEEEEEECCCc-------EEEEECCCCee
Q 005096 209 A-------IKYWQNNMN-N-----------VKANKSAHKESVRDLSFCRTDLKFCSCSDDTT-------VKVWDFARCQE 262 (715)
Q Consensus 209 ~-------I~iwd~~~~-~-----------~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~-------V~iwdl~~~~~ 262 (715)
. +.+|....+ + ...........+...+++.+++.++....+.. ..++.. ....
T Consensus 129 ~~~~~~~~~~~~~~~~g~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 207 (620)
T COG1506 129 GDHLFVDRLPVWFDGRGGERSDLYVVDIESKLIKLGLGNLDVVSFATDGDGRLVASIRLDDDADPWVTNLYVLIE-GNGE 207 (620)
T ss_pred ceeeeecccceeecCCCCcccceEEEccCcccccccCCCCceeeeeeCCCCceeEEeeeccccCCceEeeEEEec-CCCc
Confidence 2 334432222 1 11122233445666666666666665544332 223333 2334
Q ss_pred EEEecccCCceEEEEEcCCCCEEEEEeCC-C-------cEEEEECCCCceeEEeccCC--CceEEEEEcC-CCCEEEEEE
Q 005096 263 ERSLTGHGWDVKSVDWHPTKSLLVSGGKD-S-------LVKLWDAKSGRELCSFHGHK--NMVLCVKWNQ-NGNWVLTAS 331 (715)
Q Consensus 263 ~~~l~~~~~~I~si~~spdg~~L~sgs~D-g-------~I~iwDl~s~~~~~~~~~~~--~~I~sl~~sp-dg~~Lasgs 331 (715)
+..+......+..+.|.++++.++..+.. . .+.+++.+.++....+.... .....+.+.- +...++++.
T Consensus 208 ~~~~~~~~~~~~~~~~~~~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (620)
T COG1506 208 LESLTPGEGSISKLAFDADGKSIALLGTESDRGLAEGDFILLLDGELGEVDGDLSSGDDTRGAWAVEGGLDGDGLLFIAT 287 (620)
T ss_pred eEEEcCCCceeeeeeeCCCCCeeEEeccCCccCccccceEEEEeccccccceeeccCCcccCcHHhccccCCCcEEEEEe
Confidence 44445555668899999999855544332 2 24444523332222111111 1111111112 233333444
Q ss_pred C-CCeEEEEECCCCeE-EEEeecCCCCeEEEEEccCCCCEEEEEeCC---CcEEEEEcCCCCceEEEeeccCCCEEEEEE
Q 005096 332 K-DQIIKLYDIRAMKE-LESFRGHRKDVTALAWHPFHEEYFVSGSLD---GSIFHWLVGHETPQVEIHNVHDNTVWDLAW 406 (715)
Q Consensus 332 ~-dg~I~iwDl~t~~~-~~~~~~h~~~V~~l~~sp~~~~~l~sgs~D---G~I~iwd~~~~~~~~~~~~~h~~~V~~l~~ 406 (715)
. .+...++++..... ..........|..+.+ +++.+++..+.. ..|.+++. .............+....+
T Consensus 288 ~~~g~~~l~~~~~~~~~~~~~~~~~~~v~~f~~--~~~~~~~~~s~~~~p~~i~~~~~---~~~~~~~~~~~~~~~~~~~ 362 (620)
T COG1506 288 DGGGSSPLFRVDDLGGGVEGLSGDDGGVPGFDV--DGRKLALAYSSPTEPPEIYLYDR---GEEAKLTSSNNSGLKKVKL 362 (620)
T ss_pred cCCCceEEEEEeccCCceeeecCCCceEEEEee--CCCEEEEEecCCCCccceEEEcC---CCceEEeeccccccccccc
Confidence 3 56777776653222 3333444466666665 244454444433 35677765 1112222223334444444
Q ss_pred cCCCCEEEEEECCC-eEEEEecCCCCCcc
Q 005096 407 HPIGYLLCSGSNDH-TTKFWCRNRPGDTA 434 (715)
Q Consensus 407 spdg~~L~sgs~Dg-~I~iWdl~~~~~~~ 434 (715)
.. -+.+..-+.|| +|.-|-+...+...
T Consensus 363 ~~-~e~~~~~~~dG~~i~~~l~~P~~~~~ 390 (620)
T COG1506 363 AE-PEPVTYKSNDGETIHGWLYKPPGFDP 390 (620)
T ss_pred CC-ceEEEEEcCCCCEEEEEEecCCCCCC
Confidence 32 24455566667 88888776555443
|
|
| >PLN02153 epithiospecifier protein | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.46 Score=51.28 Aligned_cols=64 Identities=13% Similarity=0.174 Sum_probs=33.1
Q ss_pred CCCEEEEEECC-----CcEEEEECCCCeeEE--Eecc----cCCceEEEEEcCCCCEEEEEeCC-----------CcEEE
Q 005096 239 TDLKFCSCSDD-----TTVKVWDFARCQEER--SLTG----HGWDVKSVDWHPTKSLLVSGGKD-----------SLVKL 296 (715)
Q Consensus 239 d~~~Las~s~D-----g~V~iwdl~~~~~~~--~l~~----~~~~I~si~~spdg~~L~sgs~D-----------g~I~i 296 (715)
++++++.|+.+ ..|.+||+.+.+-.. .+.. ....-.+++. -++++++.|+.+ ..|.+
T Consensus 85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~v~~ 163 (341)
T PLN02153 85 GTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMAS-DENHVYVFGGVSKGGLMKTPERFRTIEA 163 (341)
T ss_pred CCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEE-ECCEEEEECCccCCCccCCCcccceEEE
Confidence 45666666643 357888987643322 1110 0111122233 246667777653 24778
Q ss_pred EECCCCc
Q 005096 297 WDAKSGR 303 (715)
Q Consensus 297 wDl~s~~ 303 (715)
||.++.+
T Consensus 164 yd~~~~~ 170 (341)
T PLN02153 164 YNIADGK 170 (341)
T ss_pred EECCCCe
Confidence 8887654
|
|
| >PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A | Back alignment and domain information |
|---|
Probab=96.50 E-value=1.9 Score=49.36 Aligned_cols=248 Identities=13% Similarity=0.168 Sum_probs=125.0
Q ss_pred cCCCCEEEEEeCCCeEEEEeCCCCce--EEEEecc-CCCEEEEEEcCCC-CEEEEEeCCCcEEEEeCCC--CceeeeecC
Q 005096 153 TPTGRRLITGSQSGEFTLWNGQSFNF--EMILQAH-DHAIRSMVWSHND-NWMVSGDDGGAIKYWQNNM--NNVKANKSA 226 (715)
Q Consensus 153 spdg~~Latgs~dg~I~Iwd~~~~~~--~~~l~~h-~~~V~~l~~spdg-~~L~tgs~dg~I~iwd~~~--~~~~~~~~~ 226 (715)
..++..++.+.++|.|+...+..... ....-+. ....+++++..++ .+|++|+..|.=.++.+.. -+++..+ .
T Consensus 219 ~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~-~ 297 (504)
T PF10433_consen 219 DKDGDRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDSL-P 297 (504)
T ss_dssp STTSSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEEEE--
T ss_pred cCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEec-c
Confidence 45678899999999998887665331 1222222 3455667776554 4777787766544444443 2333333 3
Q ss_pred CCCCeEEEEEecC----CC------EEEEEE---CCCcEEEEECCCCee--EEEeccc--CCceEEEEEcC-CCCEEEEE
Q 005096 227 HKESVRDLSFCRT----DL------KFCSCS---DDTTVKVWDFARCQE--ERSLTGH--GWDVKSVDWHP-TKSLLVSG 288 (715)
Q Consensus 227 h~~~I~~l~~spd----~~------~Las~s---~Dg~V~iwdl~~~~~--~~~l~~~--~~~I~si~~sp-dg~~L~sg 288 (715)
.-++|.++++... .. .|++++ .+|.++++.-.-.-. ....... -..++.+.... ++.+|+.+
T Consensus 298 N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~Gi~~~~~~~~~~~l~~v~~iW~l~~~~~~~~~lv~S 377 (504)
T PF10433_consen 298 NWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRNGIGIEGLELASSELPGVTGIWTLKLSSSDHSYLVLS 377 (504)
T ss_dssp ---SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEESBEEE--EEEEEEESTEEEEEEE-SSSSSBSEEEEE
T ss_pred CcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEeccCCceeeeeeccCCCCceEEEEeeecCCCceEEEEE
Confidence 4567888888532 12 566665 367888875321111 1111111 23444554432 24577766
Q ss_pred eCCCcEEEEECC---CCceeEEe-----ccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeec-CCCCeEE
Q 005096 289 GKDSLVKLWDAK---SGRELCSF-----HGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRG-HRKDVTA 359 (715)
Q Consensus 289 s~Dg~I~iwDl~---s~~~~~~~-----~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~-h~~~V~~ 359 (715)
..+. -+++.+. ..+.+..+ ......+.+-.+. ++.++=.+ ...|++.|....+....+.. ....|.+
T Consensus 378 ~~~~-T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~--~~~ivQVt-~~~i~l~~~~~~~~~~~w~~~~~~~I~~ 453 (504)
T PF10433_consen 378 FPNE-TRVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVG--DGRIVQVT-PKGIRLIDLEDGKLTQEWKPPAGSIIVA 453 (504)
T ss_dssp ESSE-EEEEEES----SSEEEEE---TS-SSS-EEEEEEET--TTEEEEEE-SSEEEEEESSSTSEEEEEE-TTS---SE
T ss_pred cCCc-eEEEEEecccCCcchhhhhhccCCCCCCCeEEEEcC--CCeEEEEe-cCeEEEEECCCCeEEEEEeCCCCCeEEE
Confidence 6544 4455553 33333222 1122234333333 44455444 34588899887777766543 3445666
Q ss_pred EEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeec----cCCCEEEEEEcC
Q 005096 360 LAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNV----HDNTVWDLAWHP 408 (715)
Q Consensus 360 l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~----h~~~V~~l~~sp 408 (715)
.++ ++.+++.+..++.+.++.++........... ....|.|+...|
T Consensus 454 a~~---~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eis~l~i~p 503 (504)
T PF10433_consen 454 ASI---NDPQVLVALSGGELVYFELDDNKISVSDNDETILELDNEISCLSIEP 503 (504)
T ss_dssp EEE---SSSEEEEEE-TTEEEEEEEETTEEEEEEE----EE-SS-EEEEE---
T ss_pred EEE---CCCEEEEEEeCCcEEEEEEECCceeeeeeccccccCCCceEEEEeCC
Confidence 665 4566777777888988888766554333211 356788887654
|
... |
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.1 Score=50.79 Aligned_cols=173 Identities=11% Similarity=0.103 Sum_probs=100.3
Q ss_pred CCCEEEEEeC--CCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEE-EECCCcEEEEECCCCeeEEEecccCCce
Q 005096 197 NDNWMVSGDD--GGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCS-CSDDTTVKVWDFARCQEERSLTGHGWDV 273 (715)
Q Consensus 197 dg~~L~tgs~--dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las-~s~Dg~V~iwdl~~~~~~~~l~~~~~~I 273 (715)
++.++.+.+. ...|++||+.+++.+.........+..=-+..-++++.. .-.||.-.++|.++.+++..+. ..+.-
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~-y~GeG 133 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFS-YEGEG 133 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccc-cCCcc
Confidence 4555555543 356999999988877665433222222222222334433 3357888899998888877665 33344
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEe----ccC-CCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEE
Q 005096 274 KSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSF----HGH-KNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELE 348 (715)
Q Consensus 274 ~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~----~~~-~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~ 348 (715)
+.++- |++.|+.++...+++.-|-++-....++ .+. -..++.+.|- ||...|-.-.+..|...|..+|+.+.
T Consensus 134 WgLt~--d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV~~ 210 (262)
T COG3823 134 WGLTS--DDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSGRVVA 210 (262)
T ss_pred eeeec--CCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCCCCcEEE
Confidence 45543 4666777766667777776654433322 211 1223444454 56555555455566666777776655
Q ss_pred Eee------------cCCCCeEEEEEccCCCCEEEEE
Q 005096 349 SFR------------GHRKDVTALAWHPFHEEYFVSG 373 (715)
Q Consensus 349 ~~~------------~h~~~V~~l~~sp~~~~~l~sg 373 (715)
.+. .+..-.+.|++.+..++++++|
T Consensus 211 widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 211 WIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred EEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 443 2445678899998666777766
|
|
| >PLN02153 epithiospecifier protein | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.74 Score=49.65 Aligned_cols=185 Identities=9% Similarity=0.034 Sum_probs=86.8
Q ss_pred CCCEEEEEeCC-------CeEEEEeCCCCceEEEEecc---CC---CEEEEEEcCCCCEEEEEeCC-----CcEEEEeCC
Q 005096 155 TGRRLITGSQS-------GEFTLWNGQSFNFEMILQAH---DH---AIRSMVWSHNDNWMVSGDDG-----GAIKYWQNN 216 (715)
Q Consensus 155 dg~~Latgs~d-------g~I~Iwd~~~~~~~~~l~~h---~~---~V~~l~~spdg~~L~tgs~d-----g~I~iwd~~ 216 (715)
++++++.|+.+ ..+.+||..+.+-....... .. ....+++ ++++++.|+.+ ..|.+||..
T Consensus 32 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~ 109 (341)
T PLN02153 32 GDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAV--GTKLYIFGGRDEKREFSDFYSYDTV 109 (341)
T ss_pred CCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEE--CCEEEEECCCCCCCccCcEEEEECC
Confidence 34555566542 35788888775443321110 10 1222232 45666777653 357788887
Q ss_pred CCceeeeecC-----CCCCeEEEEEecCCCEEEEEECC-----------CcEEEEECCCCeeEEEeccc------CCceE
Q 005096 217 MNNVKANKSA-----HKESVRDLSFCRTDLKFCSCSDD-----------TTVKVWDFARCQEERSLTGH------GWDVK 274 (715)
Q Consensus 217 ~~~~~~~~~~-----h~~~I~~l~~spd~~~Las~s~D-----------g~V~iwdl~~~~~~~~l~~~------~~~I~ 274 (715)
+.+-...-.. ........+..-++++++.|+.+ ..|.+||.++.+-.. +... .....
T Consensus 110 t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~-l~~~~~~~~~r~~~~ 188 (341)
T PLN02153 110 KNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQ-LPDPGENFEKRGGAG 188 (341)
T ss_pred CCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEee-CCCCCCCCCCCCcce
Confidence 6543221110 11111222223355666666643 247788887643322 1111 11112
Q ss_pred EEEEcCCCCEEEEEeCC-------------CcEEEEECCCCceeEEec-c--C-CCceEEEEEcCCCCEEEEEECC----
Q 005096 275 SVDWHPTKSLLVSGGKD-------------SLVKLWDAKSGRELCSFH-G--H-KNMVLCVKWNQNGNWVLTASKD---- 333 (715)
Q Consensus 275 si~~spdg~~L~sgs~D-------------g~I~iwDl~s~~~~~~~~-~--~-~~~I~sl~~spdg~~Lasgs~d---- 333 (715)
.+.+ +++++++++.+ ..|.+||+.+.+-...-. + . .....+++ .-++++++.|+..
T Consensus 189 ~~~~--~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~-~~~~~iyv~GG~~~~~~ 265 (341)
T PLN02153 189 FAVV--QGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARSVFAHA-VVGKYIIIFGGEVWPDL 265 (341)
T ss_pred EEEE--CCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCcceeeeE-EECCEEEEECcccCCcc
Confidence 2222 45666655432 458889988654332211 0 0 11112222 2246667777641
Q ss_pred ----------CeEEEEECCCCe
Q 005096 334 ----------QIIKLYDIRAMK 345 (715)
Q Consensus 334 ----------g~I~iwDl~t~~ 345 (715)
..|..||+.+.+
T Consensus 266 ~~~~~~~~~~n~v~~~d~~~~~ 287 (341)
T PLN02153 266 KGHLGPGTLSNEGYALDTETLV 287 (341)
T ss_pred ccccccccccccEEEEEcCccE
Confidence 257788876544
|
|
| >TIGR01063 gyrA DNA gyrase, A subunit | Back alignment and domain information |
|---|
Probab=96.31 E-value=2.8 Score=50.51 Aligned_cols=235 Identities=12% Similarity=0.110 Sum_probs=126.1
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce-------E--EEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCC-
Q 005096 147 INRVLWTPTGRRLITGSQSGEFTLWNGQSFNF-------E--MILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNN- 216 (715)
Q Consensus 147 I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~-------~--~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~- 216 (715)
|..-.+.++...+++.+.+|.|+..++.+... . ..++. +..+..+......+.|+..+.+|.+...+..
T Consensus 487 i~~edli~~e~~~vllS~~GyIKri~~~~~~~~~~~~~g~s~~klKe-~D~l~~~~~~~t~d~LllfTs~Grv~~l~~~~ 565 (800)
T TIGR01063 487 IDIEDLIARENVVVTLSHNGYVKRVPVSAYRLQKRGGKGVSGADMKD-DDFIEQLLVASTHDYLLFFTNRGKVYWLKVYQ 565 (800)
T ss_pred cchhhccCcceEEEEEcCCCEEEecchhhhhhhcccCcCccccccCC-CCeeEEEEEecCCCeEEEEeCCCcEEEEEhhh
Confidence 33344556677889999999999886554321 1 11122 2344444444455666666667777665432
Q ss_pred --CC------cee---eeecCCCCCeEEEEEe--cCCCEEEEEECCCcEEEEECCCCee-------EEEecccCCceEEE
Q 005096 217 --MN------NVK---ANKSAHKESVRDLSFC--RTDLKFCSCSDDTTVKVWDFARCQE-------ERSLTGHGWDVKSV 276 (715)
Q Consensus 217 --~~------~~~---~~~~~h~~~I~~l~~s--pd~~~Las~s~Dg~V~iwdl~~~~~-------~~~l~~~~~~I~si 276 (715)
.. ..+ ..+.....-|.++.+. .++.+++..+.+|.++..++..... ...+.. .+.+..+
T Consensus 566 IP~~~r~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~~~~lvliT~~GyiKRi~l~~~~~~~r~G~~aiklke-~D~lv~v 644 (800)
T TIGR01063 566 IPEASRTAKGKPIVNLLPLQPDERITAILSVKEFDDGLYLFFATKNGVVKKTSLTEFSNIRSNGIIAIKLDD-GDELISV 644 (800)
T ss_pred CcCCCcCCCCcCHHHhccCCCCCeEEEEEEeccCCCCCEEEEEeCCCEEEEEEhHHhhhhccCCcccccCCC-CCEEEEE
Confidence 11 111 1122222234444432 3556899999999999988754321 112222 3444444
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCC---------CceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCC----
Q 005096 277 DWHPTKSLLVSGGKDSLVKLWDAKS---------GRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRA---- 343 (715)
Q Consensus 277 ~~spdg~~L~sgs~Dg~I~iwDl~s---------~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t---- 343 (715)
....+...|+..+..|.+..+.+.. |.....+. ....|.++....+..+|+..+..|.++...+..
T Consensus 645 ~~~~~~d~lll~Ts~Gr~~r~~v~eIp~~gr~~~Gv~~i~L~-~~E~Vv~~~~v~~~~~ll~vT~~G~~Kr~~l~e~~~~ 723 (800)
T TIGR01063 645 RLTSGDDEVMLGSKNGKAVRFPEEDVRPMGRAARGVRGIKLK-NEDFVVSLLVVSEESYLLIVTENGYGKRTSIEEYRET 723 (800)
T ss_pred EEeCCCCEEEEEECCCcEEEEEhhhcCCcCCCCCCeecccCC-CCCEEEEEEEeccccEEEEEecCCcEEEEEHHHcccc
Confidence 4444445677777778776665432 11222233 233455555444556788888899888876532
Q ss_pred ---CeEEEE--eecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcC
Q 005096 344 ---MKELES--FRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVG 385 (715)
Q Consensus 344 ---~~~~~~--~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~ 385 (715)
++-+.. +......+..+.... ++..++..+.+|.+..++..
T Consensus 724 ~R~~kGv~~ikl~~~~d~lv~~~~v~-~~~~v~liT~~G~~lrf~~~ 769 (800)
T TIGR01063 724 SRGGKGVKSIKITDRNGQVVGAIAVD-DDDELMLITSAGKLIRTSVQ 769 (800)
T ss_pred CCCCcceEEEEccCCCCeEEEEEEec-CCCeEEEEecCCeEEEeeHh
Confidence 122222 222234444444443 34456666778877777654
|
This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV. |
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=96.26 E-value=1.8 Score=44.97 Aligned_cols=219 Identities=14% Similarity=0.176 Sum_probs=123.1
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEeCC-------CCceeeeecC-----CCCCeEEEEEecCCC------------EEE
Q 005096 189 IRSMVWSHNDNWMVSGDDGGAIKYWQNN-------MNNVKANKSA-----HKESVRDLSFCRTDL------------KFC 244 (715)
Q Consensus 189 V~~l~~spdg~~L~tgs~dg~I~iwd~~-------~~~~~~~~~~-----h~~~I~~l~~spd~~------------~La 244 (715)
-+.|++++.+-+-++....+...+||.+ ...++..+.. .....+.+.|+.... .++
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fi 104 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFL 104 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEE
Confidence 4578899988777777777899999986 1223333321 234567777764322 367
Q ss_pred EEECCCcEEEEECCCCe-----eEEEec-ccCCc-eEEEEEcC--CCCEEEEE-eCCCcEEEEECCCCceeE--EeccC-
Q 005096 245 SCSDDTTVKVWDFARCQ-----EERSLT-GHGWD-VKSVDWHP--TKSLLVSG-GKDSLVKLWDAKSGRELC--SFHGH- 311 (715)
Q Consensus 245 s~s~Dg~V~iwdl~~~~-----~~~~l~-~~~~~-I~si~~sp--dg~~L~sg-s~Dg~I~iwDl~s~~~~~--~~~~~- 311 (715)
.+++||+|.-|.-.-.. ....+. ..... -+.+++.. .+++|+.+ -..++|.+||-.-.+... .+...
T Consensus 105 f~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP~ 184 (336)
T TIGR03118 105 FVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDPA 184 (336)
T ss_pred EEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCCC
Confidence 88999999999852211 112222 11122 33455543 24455444 467889999855322110 01100
Q ss_pred ------CCce---------EEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEee--cCCCCeEEEEEcc-----CCCCE
Q 005096 312 ------KNMV---------LCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFR--GHRKDVTALAWHP-----FHEEY 369 (715)
Q Consensus 312 ------~~~I---------~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~--~h~~~V~~l~~sp-----~~~~~ 369 (715)
.-.| +-..-.++.+.=+.+..-|.|-+||+. ++.++++. +.-..-..|+..| ..+.+
T Consensus 185 iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~l 263 (336)
T TIGR03118 185 LPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPESFGSLSGAL 263 (336)
T ss_pred CCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeChhhhCCCCCCe
Confidence 0001 111111222222233345789999986 78887774 2223445565544 35678
Q ss_pred EEEEeCCCcEEEEEcCCCCceEEEeeccC-----CCEEEEEEcC
Q 005096 370 FVSGSLDGSIFHWLVGHETPQVEIHNVHD-----NTVWDLAWHP 408 (715)
Q Consensus 370 l~sgs~DG~I~iwd~~~~~~~~~~~~~h~-----~~V~~l~~sp 408 (715)
|+---.||+|.+||..++..+-.+..... ..+|.|.|..
T Consensus 264 LVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 264 LVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred EEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence 88777899999999987765544443222 2467888865
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.00081 Score=76.71 Aligned_cols=226 Identities=15% Similarity=0.203 Sum_probs=124.2
Q ss_pred CeEEEEeCCCCc-eEEEEeccCCCEEEEEEcCCC-CEEEEEeCCCcEEEEeCCC--Cceee-----eecCCCCCeEEEEE
Q 005096 166 GEFTLWNGQSFN-FEMILQAHDHAIRSMVWSHND-NWMVSGDDGGAIKYWQNNM--NNVKA-----NKSAHKESVRDLSF 236 (715)
Q Consensus 166 g~I~Iwd~~~~~-~~~~l~~h~~~V~~l~~spdg-~~L~tgs~dg~I~iwd~~~--~~~~~-----~~~~h~~~I~~l~~ 236 (715)
+-|++-|..+.- ....+++..+.|-.+.|...+ ..+. ..-|.+.|||++. +++.. ........+.-|.|
T Consensus 111 ~~vrvaN~~~sm~~~~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~w 188 (1283)
T KOG1916|consen 111 NGVRVANQEPSMRHNELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSW 188 (1283)
T ss_pred hhhhhccCcchhHHHHHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeee
Confidence 447777765432 223455677888888885432 2222 3347788998653 33222 22223344555666
Q ss_pred ec---CCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCC
Q 005096 237 CR---TDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKN 313 (715)
Q Consensus 237 sp---d~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~ 313 (715)
++ +..++..+..+++|++.++++... ..+.+|...+..++|...|-+++.+
T Consensus 189 cp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~------------------------- 242 (1283)
T KOG1916|consen 189 CPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLAS------------------------- 242 (1283)
T ss_pred cccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhhee-------------------------
Confidence 65 556677777788888887765433 4455688888888776554322221
Q ss_pred ceEEEEEcCCCCEEEEEECCCeEEEEEC-----CCCeEEEEeecCCC-CeEEEEEccCCC---------CEEEEEeC-CC
Q 005096 314 MVLCVKWNQNGNWVLTASKDQIIKLYDI-----RAMKELESFRGHRK-DVTALAWHPFHE---------EYFVSGSL-DG 377 (715)
Q Consensus 314 ~I~sl~~spdg~~Lasgs~dg~I~iwDl-----~t~~~~~~~~~h~~-~V~~l~~sp~~~---------~~l~sgs~-DG 377 (715)
+|+||..|++++.||.+++|.+ +.-+++..++.|++ .-.|.-|+. .. .+++++++ +.
T Consensus 243 ------lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~-~~~~~v~i~~w~~~Itttd~nr 315 (1283)
T KOG1916|consen 243 ------LSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHK-QEILVVSIGKWVLRITTTDVNR 315 (1283)
T ss_pred ------eCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeecc-ccccCCccceeEEEEecccCCc
Confidence 7788888888888887777654 33345556666653 222222322 11 12344443 34
Q ss_pred cEEEEEcCCCCceEE-------EeeccCCCEEEEEEcCC-CCEEEEEECCCeEEEEe
Q 005096 378 SIFHWLVGHETPQVE-------IHNVHDNTVWDLAWHPI-GYLLCSGSNDHTTKFWC 426 (715)
Q Consensus 378 ~I~iwd~~~~~~~~~-------~~~~h~~~V~~l~~spd-g~~L~sgs~Dg~I~iWd 426 (715)
.+++|......+.+. +...|++.|+.+....- -..+++-+-|+.|++|-
T Consensus 316 e~k~w~~a~w~Cll~~~~d~v~iV~p~~~~v~~~~~~~~~~~~~v~r~v~~~i~~~q 372 (1283)
T KOG1916|consen 316 EEKFWAEAPWQCLLDKLIDGVQIVGPHDGEVTDLSMCQWMTTRLVSRSVDGTIKIWQ 372 (1283)
T ss_pred ceeEeeccchhhhhhhcccceEeecCCCccccchhhhHHHHHHHHHhhhHHHHHHhh
Confidence 588887665554422 22233334433221100 11244456677888884
|
|
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=96.26 E-value=1.6 Score=44.45 Aligned_cols=237 Identities=12% Similarity=0.011 Sum_probs=144.6
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeee--
Q 005096 146 SINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKAN-- 223 (715)
Q Consensus 146 ~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~-- 223 (715)
.-..|+-.+||..-+++...+.|--.|-.+++....-.+....-..|..-+|+..-++-+.. .|.-.|-++.+....
T Consensus 63 ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f~l 141 (353)
T COG4257 63 APFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRFPL 141 (353)
T ss_pred CccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEeec
Confidence 44677888999888888888888888888888877766666777788888888766654333 444445544443221
Q ss_pred -ecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecc-cCCceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 005096 224 -KSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTG-HGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKS 301 (715)
Q Consensus 224 -~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~-~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s 301 (715)
.+.-........|.+.+++-+++.. |.---.|-.+. .++.+.. ....-..|+..+||..-++...++.|...|..+
T Consensus 142 p~~~a~~nlet~vfD~~G~lWFt~q~-G~yGrLdPa~~-~i~vfpaPqG~gpyGi~atpdGsvwyaslagnaiaridp~~ 219 (353)
T COG4257 142 PLEHADANLETAVFDPWGNLWFTGQI-GAYGRLDPARN-VISVFPAPQGGGPYGICATPDGSVWYASLAGNAIARIDPFA 219 (353)
T ss_pred ccccCCCcccceeeCCCccEEEeecc-ccceecCcccC-ceeeeccCCCCCCcceEECCCCcEEEEeccccceEEccccc
Confidence 2334556778889999988887753 21111222111 1222221 234567889999999888888888888888877
Q ss_pred CceeEEe--ccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeE-EEEeecCCCCeEEEEEccCCCCEEEEEeCCCc
Q 005096 302 GRELCSF--HGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKE-LESFRGHRKDVTALAWHPFHEEYFVSGSLDGS 378 (715)
Q Consensus 302 ~~~~~~~--~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~-~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~ 378 (715)
+.....- +......+.+--++.++.-++....+.+..||-.+..- ...+.+.+..-.++.+.. .++...+--..|.
T Consensus 220 ~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~sW~eypLPgs~arpys~rVD~-~grVW~sea~aga 298 (353)
T COG4257 220 GHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTSWIEYPLPGSKARPYSMRVDR-HGRVWLSEADAGA 298 (353)
T ss_pred CCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCcccccceeeeCCCCCCCcceeeecc-CCcEEeeccccCc
Confidence 6322211 22233345555667788777777778888888764331 122334444455555544 3344343334455
Q ss_pred EEEEEcCC
Q 005096 379 IFHWLVGH 386 (715)
Q Consensus 379 I~iwd~~~ 386 (715)
|.-+|-++
T Consensus 299 i~rfdpet 306 (353)
T COG4257 299 IGRFDPET 306 (353)
T ss_pred eeecCccc
Confidence 55555433
|
|
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.18 Score=57.21 Aligned_cols=181 Identities=13% Similarity=0.027 Sum_probs=84.8
Q ss_pred CCCEEEEEeCCC-----eEEEEeCCCCceEEEEeccCCC-EEEEEEcCCCCEEEEEeCC--CcEEEEeCCCCceeeeecC
Q 005096 155 TGRRLITGSQSG-----EFTLWNGQSFNFEMILQAHDHA-IRSMVWSHNDNWMVSGDDG--GAIKYWQNNMNNVKANKSA 226 (715)
Q Consensus 155 dg~~Latgs~dg-----~I~Iwd~~~~~~~~~l~~h~~~-V~~l~~spdg~~L~tgs~d--g~I~iwd~~~~~~~~~~~~ 226 (715)
++..+++|+.++ ++..||..+.+....-.-.... -.+++ .-++.+.++|+.+ ..+..||..++.-...-.-
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v-~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l 349 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGV-PANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSL 349 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEE-EECCEEEEECCcCCCCceEEEECCCCeEEECCCC
Confidence 455566776543 4677887765433322111111 11222 2356777777754 4577888765533221111
Q ss_pred CCCCeEEEEEecCCCEEEEEECC---CcEEEEECCCCeeEE--EecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 005096 227 HKESVRDLSFCRTDLKFCSCSDD---TTVKVWDFARCQEER--SLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKS 301 (715)
Q Consensus 227 h~~~I~~l~~spd~~~Las~s~D---g~V~iwdl~~~~~~~--~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s 301 (715)
...........-+++..+.|+.+ ..+..||.++.+-.. .+.........+++ ++++.+.| |.+.+||.++
T Consensus 350 ~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~--~~~IYv~G---G~~e~ydp~~ 424 (480)
T PHA02790 350 LKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVF--GRRLFLVG---RNAEFYCESS 424 (480)
T ss_pred CCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEE--CCEEEEEC---CceEEecCCC
Confidence 11111112222366677777654 347788876543322 11111111222233 45666665 4577888876
Q ss_pred CceeE--EeccCCCceEEEEEcCCCCEEEEEECC-----CeEEEEECCC
Q 005096 302 GRELC--SFHGHKNMVLCVKWNQNGNWVLTASKD-----QIIKLYDIRA 343 (715)
Q Consensus 302 ~~~~~--~~~~~~~~I~sl~~spdg~~Lasgs~d-----g~I~iwDl~t 343 (715)
.+-.. .+.........+.+ ++++.++|+.+ ..|.+||.++
T Consensus 425 ~~W~~~~~m~~~r~~~~~~v~--~~~IYviGG~~~~~~~~~ve~Yd~~~ 471 (480)
T PHA02790 425 NTWTLIDDPIYPRDNPELIIV--DNKLLLIGGFYRGSYIDTIEVYNNRT 471 (480)
T ss_pred CcEeEcCCCCCCccccEEEEE--CCEEEEECCcCCCcccceEEEEECCC
Confidence 54322 12211122222222 56667777644 2455555554
|
|
| >PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I [] | Back alignment and domain information |
|---|
Probab=96.24 E-value=3.8 Score=49.34 Aligned_cols=157 Identities=15% Similarity=0.196 Sum_probs=96.1
Q ss_pred ccCCCEEEEEEc---C--C--CCEEEEEeCCCcEEEEeCCCC---------------ceeeeec---CCCCCeEEEEEec
Q 005096 184 AHDHAIRSMVWS---H--N--DNWMVSGDDGGAIKYWQNNMN---------------NVKANKS---AHKESVRDLSFCR 238 (715)
Q Consensus 184 ~h~~~V~~l~~s---p--d--g~~L~tgs~dg~I~iwd~~~~---------------~~~~~~~---~h~~~I~~l~~sp 238 (715)
.....|..|+|. . + .++|++= ....+.|+...-. ..+..+. .......+++|+|
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vr-t~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP 155 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVR-TETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNP 155 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEE-cCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEecc
Confidence 456788888887 2 1 2355543 4456677762111 1122221 2344678899998
Q ss_pred -CCCEEEEEECCCcEEEEECCCCe-----eEEEeccc----------CCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 005096 239 -TDLKFCSCSDDTTVKVWDFARCQ-----EERSLTGH----------GWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSG 302 (715)
Q Consensus 239 -d~~~Las~s~Dg~V~iwdl~~~~-----~~~~l~~~----------~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~ 302 (715)
+...||+....|...|||+.... ........ .+.-..|.|..+.+.|++++. ..+.++|+++.
T Consensus 156 ~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r-~~l~~~d~~~~ 234 (765)
T PF10214_consen 156 WDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNR-SKLMLIDFESN 234 (765)
T ss_pred CccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcC-CceEEEECCCC
Confidence 44679999999999999992111 11111111 123347889888888887766 66899999977
Q ss_pred ceeE--EeccCCCceEEEEEcCC-CCEEEEEECCCeEEEEECCC
Q 005096 303 RELC--SFHGHKNMVLCVKWNQN-GNWVLTASKDQIIKLYDIRA 343 (715)
Q Consensus 303 ~~~~--~~~~~~~~I~sl~~spd-g~~Lasgs~dg~I~iwDl~t 343 (715)
.... .......+|..+.-+++ -+++++-+ ...|.+.|+..
T Consensus 235 ~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT-s~eiiw~~~~~ 277 (765)
T PF10214_consen 235 WQTEYLVTAKTWSWILDVKRSPDNPSHVFILT-SKEIIWLDVKS 277 (765)
T ss_pred CccchhccCCChhheeeEEecCCccceEEEEe-cCeEEEEEccC
Confidence 5532 22335567889988876 23333333 36788888876
|
These proteins are found in fungi. |
| >KOG2377 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.91 Score=49.14 Aligned_cols=151 Identities=9% Similarity=0.150 Sum_probs=92.7
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEeCCCC---ceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCce----
Q 005096 148 NRVLWTPTGRRLITGSQSGEFTLWNGQSF---NFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNV---- 220 (715)
Q Consensus 148 ~~l~~spdg~~Latgs~dg~I~Iwd~~~~---~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~---- 220 (715)
+.+-|...++.|++..+ |.+.=|.++.. -.+..-...++.|.+|.|+.|.+.||+--.|.+|.+++....+.
T Consensus 26 ngvFfDDaNkqlfavrS-ggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~ 104 (657)
T KOG2377|consen 26 NGVFFDDANKQLFAVRS-GGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEY 104 (657)
T ss_pred cceeeccCcceEEEEec-CCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHH
Confidence 44555544554444443 34555543322 22223334567999999999999999999999999998743321
Q ss_pred eeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCC-CeeEEEecccCCceEEEEEcCCCCEEEEEe--CCCcEEEE
Q 005096 221 KANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFAR-CQEERSLTGHGWDVKSVDWHPTKSLLVSGG--KDSLVKLW 297 (715)
Q Consensus 221 ~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~-~~~~~~l~~~~~~I~si~~spdg~~L~sgs--~Dg~I~iw 297 (715)
..+.+.....|...+|+.+ .-+|..++.| +-+|-+.. ...++..+.+...|+-..|.++.+.++.++ ..+++.=+
T Consensus 105 ~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf 182 (657)
T KOG2377|consen 105 TQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPF 182 (657)
T ss_pred HHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeeccccccccccE
Confidence 2222344556899999865 5566666554 56665532 234555667788899999998887544433 33444444
Q ss_pred ECCC
Q 005096 298 DAKS 301 (715)
Q Consensus 298 Dl~s 301 (715)
-+++
T Consensus 183 ~~~~ 186 (657)
T KOG2377|consen 183 HFRA 186 (657)
T ss_pred EEee
Confidence 4443
|
|
| >PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I [] | Back alignment and domain information |
|---|
Probab=96.15 E-value=1.8 Score=52.17 Aligned_cols=115 Identities=14% Similarity=0.121 Sum_probs=75.3
Q ss_pred CCceEEEEEcCCC-CEEEEEeCCCcEEEEECCCC----c-eeEEeccCC----------CceEEEEEcCCCCEEEEEECC
Q 005096 270 GWDVKSVDWHPTK-SLLVSGGKDSLVKLWDAKSG----R-ELCSFHGHK----------NMVLCVKWNQNGNWVLTASKD 333 (715)
Q Consensus 270 ~~~I~si~~spdg-~~L~sgs~Dg~I~iwDl~s~----~-~~~~~~~~~----------~~I~sl~~spdg~~Lasgs~d 333 (715)
+....+|+|+|.. +.||+....|+..|||+... . .+....... +.-..|.|..+.+.|++++ .
T Consensus 145 g~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~-r 223 (765)
T PF10214_consen 145 GFPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCN-R 223 (765)
T ss_pred CCccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEc-C
Confidence 4467899999854 58999999999999999211 1 111111111 2234788988888888886 5
Q ss_pred CeEEEEECCCCeEEE--EeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCC
Q 005096 334 QIIKLYDIRAMKELE--SFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGH 386 (715)
Q Consensus 334 g~I~iwDl~t~~~~~--~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~ 386 (715)
..+.++|+++..... ........|.++.-++.+..+++.-+. ..|...++..
T Consensus 224 ~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLTs-~eiiw~~~~~ 277 (765)
T PF10214_consen 224 SKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILTS-KEIIWLDVKS 277 (765)
T ss_pred CceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEec-CeEEEEEccC
Confidence 578899999776533 222345678889888854455444433 4677777766
|
These proteins are found in fungi. |
| >TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.72 Score=49.31 Aligned_cols=105 Identities=9% Similarity=0.086 Sum_probs=51.4
Q ss_pred CCCEEEEEeCC-----CcEEEEeCCCCce---eeeecCCCCCe--EEEEEecCCCEEEEEEC-----CCcEEEEECCCCe
Q 005096 197 NDNWMVSGDDG-----GAIKYWQNNMNNV---KANKSAHKESV--RDLSFCRTDLKFCSCSD-----DTTVKVWDFARCQ 261 (715)
Q Consensus 197 dg~~L~tgs~d-----g~I~iwd~~~~~~---~~~~~~h~~~I--~~l~~spd~~~Las~s~-----Dg~V~iwdl~~~~ 261 (715)
++++++.|+.+ ..+..||+.+... ...+....... .+++. -++++++.|+. ...+.+||+.+.+
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~-~~~~iYv~GG~~~~~~~~~v~~yd~~~~~ 150 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACY-KDGTLYVGGGNRNGKPSNKSYLFNLETQE 150 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEE-ECCEEEEEeCcCCCccCceEEEEcCCCCC
Confidence 55666777654 3466667665542 11211111111 12222 25566666654 2468888886543
Q ss_pred eE--EEecccCCceEEEEEcCCCCEEEEEeCCC----cEEEEECCCCc
Q 005096 262 EE--RSLTGHGWDVKSVDWHPTKSLLVSGGKDS----LVKLWDAKSGR 303 (715)
Q Consensus 262 ~~--~~l~~~~~~I~si~~spdg~~L~sgs~Dg----~I~iwDl~s~~ 303 (715)
-. ..+.... .....+..-++++++.|+.++ .+.+||.++.+
T Consensus 151 W~~~~~~p~~~-r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~ 197 (323)
T TIGR03548 151 WFELPDFPGEP-RVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQ 197 (323)
T ss_pred eeECCCCCCCC-CCcceEEEECCEEEEEcCCCCccccceEEEecCCCe
Confidence 22 2221111 111222223467777777654 35688887654
|
Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat. |
| >PRK05560 DNA gyrase subunit A; Validated | Back alignment and domain information |
|---|
Probab=96.06 E-value=2.7 Score=50.66 Aligned_cols=232 Identities=11% Similarity=-0.024 Sum_probs=126.8
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCCCce---------eeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECC---C---
Q 005096 195 SHNDNWMVSGDDGGAIKYWQNNMNNV---------KANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFA---R--- 259 (715)
Q Consensus 195 spdg~~L~tgs~dg~I~iwd~~~~~~---------~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~---~--- 259 (715)
..+...+++-+.+|.|+-.++..... ...+ ...+.+..+..+.....|+..+..|.+...... .
T Consensus 495 I~~E~v~vllS~~GyIKri~~~~~~~~~~~~~g~~~~kl-Ke~D~l~~~~~~~t~d~LllfTs~Grv~~l~v~~iP~~~~ 573 (805)
T PRK05560 495 IPEEDVVVTLTHGGYIKRTPLDEYRAQRRGGKGVSGAKT-KEDDFVEHLFVASTHDTLLFFTNRGRVYRLKVYEIPEASR 573 (805)
T ss_pred cCCCCEEEEEeCCCEEEEcchhhhhhhcccCCCcccccc-CCCCeeEEEEEecCCCeEEEEecCCeEEEEEhhhCcCCCc
Confidence 34567788889999998876543211 0111 123456666666677778888888887776542 1
Q ss_pred ---CeeE---EEecccCCceEEEEEcC--CCCEEEEEeCCCcEEEEECCC-------CceeEEeccCCCceEEEEEcCCC
Q 005096 260 ---CQEE---RSLTGHGWDVKSVDWHP--TKSLLVSGGKDSLVKLWDAKS-------GRELCSFHGHKNMVLCVKWNQNG 324 (715)
Q Consensus 260 ---~~~~---~~l~~~~~~I~si~~sp--dg~~L~sgs~Dg~I~iwDl~s-------~~~~~~~~~~~~~I~sl~~spdg 324 (715)
+..+ ..+.....-|.++.+.. +..++++.+.+|.++..++.. +.....++. .+.+..+......
T Consensus 574 ~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~e~~lvlvTk~GyiKRi~l~~~~~~~r~G~~~ikLke-~D~lv~v~~~~~~ 652 (805)
T PRK05560 574 TARGRPIVNLLPLEPGEKITAILPVREFDDDKYLFFATKNGTVKKTSLSEFSNIRSNGIIAINLDE-GDELIGVRLTDGD 652 (805)
T ss_pred CCCCeEHHHhcCCCCCceEEEEEeccCCCCCCEEEEEeCCCEEEEEEhHHhhhcccCCceeeccCC-CCEEEEEEEeCCC
Confidence 2222 11222233355555552 567899999999998876542 222333443 3344444444455
Q ss_pred CEEEEEECCCeEEEEECCC---------CeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCC-------C
Q 005096 325 NWVLTASKDQIIKLYDIRA---------MKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHE-------T 388 (715)
Q Consensus 325 ~~Lasgs~dg~I~iwDl~t---------~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~-------~ 388 (715)
..|+..+..|.+..+.... |..+..+.. ...|.++.....++.+++..+..|.++...+..- .
T Consensus 653 d~lll~T~~Gr~~r~~~~eIp~~gr~~~Gv~~i~L~~-~E~Vv~~~~v~~~~~~il~vTk~G~iKr~~l~e~~~~~R~~k 731 (805)
T PRK05560 653 DDILLATKNGKAIRFPESDVRPMGRTARGVRGIKLRE-GDEVVSMDVVREDSQEILTVTENGYGKRTPVSEYRLQGRGGK 731 (805)
T ss_pred CEEEEEECCCcEEEEEhhhcCccCcccCCcccccCCC-CCEEEEEEEEcCCCcEEEEEEeCCeEEEEEHHHhhccCCCCC
Confidence 6677777788777666532 222223322 2334444333323346788888898887764211 1
Q ss_pred ceEEEe-eccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCC
Q 005096 389 PQVEIH-NVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNR 429 (715)
Q Consensus 389 ~~~~~~-~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~ 429 (715)
....+. ....+.+..+....+...++..+.+|.+..++.+.
T Consensus 732 G~~~lkl~~~~d~lv~v~~v~~~~~v~i~T~~G~~lrf~~~e 773 (805)
T PRK05560 732 GVITIKITEKNGKLVGALPVDDDDEIMLITDSGKLIRTRVSE 773 (805)
T ss_pred cEEeeeccCCCCeEEEEEEecCCCeEEEEecCCeEEEEEHHH
Confidence 111111 11123443333333344566667788887777643
|
|
| >TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.66 Score=49.63 Aligned_cols=105 Identities=12% Similarity=0.116 Sum_probs=51.4
Q ss_pred CCCEEEEEECC-----CcEEEEECCCCee---EEEecccCCc--eEEEEEcCCCCEEEEEeC-----CCcEEEEECCCCc
Q 005096 239 TDLKFCSCSDD-----TTVKVWDFARCQE---ERSLTGHGWD--VKSVDWHPTKSLLVSGGK-----DSLVKLWDAKSGR 303 (715)
Q Consensus 239 d~~~Las~s~D-----g~V~iwdl~~~~~---~~~l~~~~~~--I~si~~spdg~~L~sgs~-----Dg~I~iwDl~s~~ 303 (715)
++.+++.|+.+ ..+..||+.+.+. ...+...... -.+++.. ++++++.|+. ...+.+||+++.+
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~-~~~iYv~GG~~~~~~~~~v~~yd~~~~~ 150 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYK-DGTLYVGGGNRNGKPSNKSYLFNLETQE 150 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEE-CCEEEEEeCcCCCccCceEEEEcCCCCC
Confidence 55566666654 3567777765442 1222111111 1122222 4666666664 2358888987654
Q ss_pred eeE--EeccCCCceEEEEEcCCCCEEEEEECCC----eEEEEECCCCe
Q 005096 304 ELC--SFHGHKNMVLCVKWNQNGNWVLTASKDQ----IIKLYDIRAMK 345 (715)
Q Consensus 304 ~~~--~~~~~~~~I~sl~~spdg~~Lasgs~dg----~I~iwDl~t~~ 345 (715)
-.. .+.. .......+..-++++.+.|+.++ .+.+||.++.+
T Consensus 151 W~~~~~~p~-~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~ 197 (323)
T TIGR03548 151 WFELPDFPG-EPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQ 197 (323)
T ss_pred eeECCCCCC-CCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCe
Confidence 221 1211 11112222223566777776653 35688887654
|
Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat. |
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.25 Score=48.15 Aligned_cols=173 Identities=16% Similarity=0.170 Sum_probs=94.2
Q ss_pred CCCEEEEEEC--CCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCE-EEEEeCCCcEEEEECCCCceeEEeccCCCce
Q 005096 239 TDLKFCSCSD--DTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSL-LVSGGKDSLVKLWDAKSGRELCSFHGHKNMV 315 (715)
Q Consensus 239 d~~~Las~s~--Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~-L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I 315 (715)
++.++.+.+. ...|++||+++++.+.+..-....+..=-...-+++ ....-.|+.-.+||.++-+++..+. ..+.-
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~-y~GeG 133 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFS-YEGEG 133 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccc-cCCcc
Confidence 4455555544 457999999988877654422111111111111332 3334567888999999988887765 44445
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCC-----CCeEEEEEccCCCCEEE----------EEeCCCcEE
Q 005096 316 LCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHR-----KDVTALAWHPFHEEYFV----------SGSLDGSIF 380 (715)
Q Consensus 316 ~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~-----~~V~~l~~sp~~~~~l~----------sgs~DG~I~ 380 (715)
+.++. |++.|+.++...+++.-|-++...+.++.... ..++.+.|. ++.++| .--..|+|.
T Consensus 134 WgLt~--d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V--dG~lyANVw~t~~I~rI~p~sGrV~ 209 (262)
T COG3823 134 WGLTS--DDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV--DGELYANVWQTTRIARIDPDSGRVV 209 (262)
T ss_pred eeeec--CCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee--ccEEEEeeeeecceEEEcCCCCcEE
Confidence 56553 45557777666778888877655544332111 122333333 233322 222334444
Q ss_pred EE-EcCCCCceEEEeeccCCCEEEEEEcCCC-CEEEEE
Q 005096 381 HW-LVGHETPQVEIHNVHDNTVWDLAWHPIG-YLLCSG 416 (715)
Q Consensus 381 iw-d~~~~~~~~~~~~~h~~~V~~l~~spdg-~~L~sg 416 (715)
-| |+..-.........+.+..+.|++.+++ ++++||
T Consensus 210 ~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 210 AWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred EEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 33 4433333333334456678899999986 555555
|
|
| >KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.96 E-value=5.3 Score=47.76 Aligned_cols=130 Identities=15% Similarity=0.063 Sum_probs=76.1
Q ss_pred CcEEEEECC-CCceeEEecc--CCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEee--cCCCCeEEEEEccCC
Q 005096 292 SLVKLWDAK-SGRELCSFHG--HKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFR--GHRKDVTALAWHPFH 366 (715)
Q Consensus 292 g~I~iwDl~-s~~~~~~~~~--~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~--~h~~~V~~l~~sp~~ 366 (715)
|.++.|++- .++.+.-+.. -...+ .++.+...++++| ....+++||+-..+.++..+ .....|+.+.+ .
T Consensus 912 g~~ytyk~~~~g~~lellh~T~~~~~v--~Ai~~f~~~~Lag-vG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt---~ 985 (1205)
T KOG1898|consen 912 GFVYTYKFVRNGDKLELLHKTEIPGPV--GAICPFQGRVLAG-VGRFLRLYDLGKKKLLRKCELKFIPNRISSIQT---Y 985 (1205)
T ss_pred CceEEEEEEecCceeeeeeccCCCccc--eEEeccCCEEEEe-cccEEEEeeCChHHHHhhhhhccCceEEEEEee---c
Confidence 446666653 3333322221 12233 3445655566655 46799999998776655443 34566788887 5
Q ss_pred CCEEEEEeCCCcEEEEEcCCCCceEEEeec--cCCCEEEEEEcCCCCEEEEEECCCeEEEEecC
Q 005096 367 EEYFVSGSLDGSIFHWLVGHETPQVEIHNV--HDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRN 428 (715)
Q Consensus 367 ~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~--h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~ 428 (715)
...|++|...-.|.++..+.+......+.. -...|+++.+- |...++.+..-|.+.+-++-
T Consensus 986 ~~RI~VgD~qeSV~~~~y~~~~n~l~~fadD~~pR~Vt~~~~l-D~~tvagaDrfGNi~~vR~P 1048 (1205)
T KOG1898|consen 986 GARIVVGDIQESVHFVRYRREDNQLIVFADDPVPRHVTALELL-DYDTVAGADRFGNIAVVRIP 1048 (1205)
T ss_pred ceEEEEeeccceEEEEEEecCCCeEEEEeCCCccceeeEEEEe-cCCceeeccccCcEEEEECC
Confidence 677777776666766666554444333322 23356776665 44567777777777766653
|
|
| >TIGR03547 muta_rot_YjhT mutatrotase, YjhT family | Back alignment and domain information |
|---|
Probab=95.94 E-value=1.2 Score=48.12 Aligned_cols=53 Identities=9% Similarity=0.135 Sum_probs=26.2
Q ss_pred CCCEEEEEeCC-----------CcEEEEeCCCCceeeeecCCCCCeEEE-EE-ecCCCEEEEEECC
Q 005096 197 NDNWMVSGDDG-----------GAIKYWQNNMNNVKANKSAHKESVRDL-SF-CRTDLKFCSCSDD 249 (715)
Q Consensus 197 dg~~L~tgs~d-----------g~I~iwd~~~~~~~~~~~~h~~~I~~l-~~-spd~~~Las~s~D 249 (715)
++++.++|+.+ ..+..||..+++-.............. +. .-++++.+.|+.+
T Consensus 63 ~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~ 128 (346)
T TIGR03547 63 DGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVN 128 (346)
T ss_pred CCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcC
Confidence 56777777753 246677877654332211111111111 11 2366777777654
|
Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein. |
| >TIGR01063 gyrA DNA gyrase, A subunit | Back alignment and domain information |
|---|
Probab=95.92 E-value=2.7 Score=50.67 Aligned_cols=232 Identities=11% Similarity=-0.022 Sum_probs=128.1
Q ss_pred EcCCCCEEEEEeCCCcEEEEeCCCCce---------eeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCC-----
Q 005096 194 WSHNDNWMVSGDDGGAIKYWQNNMNNV---------KANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFAR----- 259 (715)
Q Consensus 194 ~spdg~~L~tgs~dg~I~iwd~~~~~~---------~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~----- 259 (715)
+.++...+++-+.+|.|+-.++.+... ...+ ...+.+..+..+.....|+..+.+|.+...+...
T Consensus 492 li~~e~~~vllS~~GyIKri~~~~~~~~~~~~~g~s~~kl-Ke~D~l~~~~~~~t~d~LllfTs~Grv~~l~~~~IP~~~ 570 (800)
T TIGR01063 492 LIARENVVVTLSHNGYVKRVPVSAYRLQKRGGKGVSGADM-KDDDFIEQLLVASTHDYLLFFTNRGKVYWLKVYQIPEAS 570 (800)
T ss_pred ccCcceEEEEEcCCCEEEecchhhhhhhcccCcCcccccc-CCCCeeEEEEEecCCCeEEEEeCCCcEEEEEhhhCcCCC
Confidence 344566788889999998876543221 0111 1245666666677777788888888877765422
Q ss_pred ----CeeE---EEecccCCceEEEEEc--CCCCEEEEEeCCCcEEEEECCCCc-------eeEEeccCCCceEEEEEcCC
Q 005096 260 ----CQEE---RSLTGHGWDVKSVDWH--PTKSLLVSGGKDSLVKLWDAKSGR-------ELCSFHGHKNMVLCVKWNQN 323 (715)
Q Consensus 260 ----~~~~---~~l~~~~~~I~si~~s--pdg~~L~sgs~Dg~I~iwDl~s~~-------~~~~~~~~~~~I~sl~~spd 323 (715)
+..+ ..+.....-|.++.+. .++.+++..+.+|.++..+++.-+ ....+.. .+.+..+....+
T Consensus 571 r~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~~~~lvliT~~GyiKRi~l~~~~~~~r~G~~aiklke-~D~lv~v~~~~~ 649 (800)
T TIGR01063 571 RTAKGKPIVNLLPLQPDERITAILSVKEFDDGLYLFFATKNGVVKKTSLTEFSNIRSNGIIAIKLDD-GDELISVRLTSG 649 (800)
T ss_pred cCCCCcCHHHhccCCCCCeEEEEEEeccCCCCCEEEEEeCCCEEEEEEhHHhhhhccCCcccccCCC-CCEEEEEEEeCC
Confidence 1111 1222223334455543 245688899999999988765321 1222333 344544444445
Q ss_pred CCEEEEEECCCeEEEEECCC---------CeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCC-------C
Q 005096 324 GNWVLTASKDQIIKLYDIRA---------MKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGH-------E 387 (715)
Q Consensus 324 g~~Lasgs~dg~I~iwDl~t---------~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~-------~ 387 (715)
...|+..+.+|.+..+.... |.....+. .+..|.++.... ++..|+..+..|.++...+.. .
T Consensus 650 ~d~lll~Ts~Gr~~r~~v~eIp~~gr~~~Gv~~i~L~-~~E~Vv~~~~v~-~~~~ll~vT~~G~~Kr~~l~e~~~~~R~~ 727 (800)
T TIGR01063 650 DDEVMLGSKNGKAVRFPEEDVRPMGRAARGVRGIKLK-NEDFVVSLLVVS-EESYLLIVTENGYGKRTSIEEYRETSRGG 727 (800)
T ss_pred CCEEEEEECCCcEEEEEhhhcCCcCCCCCCeecccCC-CCCEEEEEEEec-cccEEEEEecCCcEEEEEHHHccccCCCC
Confidence 56677777788766665432 22222222 223355544443 455778888899888776531 1
Q ss_pred CceEEEe-eccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCC
Q 005096 388 TPQVEIH-NVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNR 429 (715)
Q Consensus 388 ~~~~~~~-~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~ 429 (715)
.....+. ....+.+..+....+...++..+.+|.+..++.+.
T Consensus 728 kGv~~ikl~~~~d~lv~~~~v~~~~~v~liT~~G~~lrf~~~e 770 (800)
T TIGR01063 728 KGVKSIKITDRNGQVVGAIAVDDDDELMLITSAGKLIRTSVQD 770 (800)
T ss_pred cceEEEEccCCCCeEEEEEEecCCCeEEEEecCCeEEEeeHhh
Confidence 1111111 11223444444444445567777788887777643
|
This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV. |
| >PRK14131 N-acetylneuraminic acid mutarotase; Provisional | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.99 Score=49.48 Aligned_cols=53 Identities=8% Similarity=0.128 Sum_probs=25.5
Q ss_pred CCCEEEEEeCCC-----------cEEEEeCCCCceeeeecCCCCCeE-EEEEe-cCCCEEEEEECC
Q 005096 197 NDNWMVSGDDGG-----------AIKYWQNNMNNVKANKSAHKESVR-DLSFC-RTDLKFCSCSDD 249 (715)
Q Consensus 197 dg~~L~tgs~dg-----------~I~iwd~~~~~~~~~~~~h~~~I~-~l~~s-pd~~~Las~s~D 249 (715)
++++++.|+.+. .+..||..++.-...-........ ..+.. -++++++.|+.+
T Consensus 84 ~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~ 149 (376)
T PRK14131 84 DGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVN 149 (376)
T ss_pred CCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCC
Confidence 566667776532 466778776543332111111111 11222 366777777653
|
|
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.33 Score=55.04 Aligned_cols=180 Identities=9% Similarity=-0.028 Sum_probs=84.8
Q ss_pred CCCEEEEEeCCC-----cEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECC--CcEEEEECCCCeeE--EEec
Q 005096 197 NDNWMVSGDDGG-----AIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDD--TTVKVWDFARCQEE--RSLT 267 (715)
Q Consensus 197 dg~~L~tgs~dg-----~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~D--g~V~iwdl~~~~~~--~~l~ 267 (715)
++.++++|+.++ .+..||..+++....-.-...........-++...++|+.+ ..+..||..+.+-. ..+.
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~ 350 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLL 350 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCCCCceEEEECCCCeEEECCCCC
Confidence 345567776543 46677777654322211111111111122366666777653 45788887554322 2222
Q ss_pred ccCCceEEEEEcCCCCEEEEEeCCC---cEEEEECCCCceeEE--eccCCCceEEEEEcCCCCEEEEEECCCeEEEEECC
Q 005096 268 GHGWDVKSVDWHPTKSLLVSGGKDS---LVKLWDAKSGRELCS--FHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIR 342 (715)
Q Consensus 268 ~~~~~I~si~~spdg~~L~sgs~Dg---~I~iwDl~s~~~~~~--~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~ 342 (715)
........+++ ++++.++|+.++ .+..||.++.+-... +.........++ -++++.++| |.+.+||.+
T Consensus 351 ~~r~~~~~~~~--~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~--~~~~IYv~G---G~~e~ydp~ 423 (480)
T PHA02790 351 KPRCNPAVASI--NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALV--FGRRLFLVG---RNAEFYCES 423 (480)
T ss_pred CCCcccEEEEE--CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEE--ECCEEEEEC---CceEEecCC
Confidence 11112222333 477777777553 477888876532221 111111112222 245555555 457788887
Q ss_pred CCeE--EEEeecCCCCeEEEEEccCCCCEEEEEeCCC-----cEEEEEcCC
Q 005096 343 AMKE--LESFRGHRKDVTALAWHPFHEEYFVSGSLDG-----SIFHWLVGH 386 (715)
Q Consensus 343 t~~~--~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG-----~I~iwd~~~ 386 (715)
+.+- +..+.........+.+ ++.++++|+.++ .|.+||..+
T Consensus 424 ~~~W~~~~~m~~~r~~~~~~v~---~~~IYviGG~~~~~~~~~ve~Yd~~~ 471 (480)
T PHA02790 424 SNTWTLIDDPIYPRDNPELIIV---DNKLLLIGGFYRGSYIDTIEVYNNRT 471 (480)
T ss_pred CCcEeEcCCCCCCccccEEEEE---CCEEEEECCcCCCcccceEEEEECCC
Confidence 6433 2222222222222222 677777777542 345555543
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.67 Score=53.14 Aligned_cols=193 Identities=10% Similarity=0.106 Sum_probs=102.4
Q ss_pred CeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeee---ecCCCCCeEEEEEecCCCE
Q 005096 166 GEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKAN---KSAHKESVRDLSFCRTDLK 242 (715)
Q Consensus 166 g~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~---~~~h~~~I~~l~~spd~~~ 242 (715)
-.|+||++. |..+..+.-....+..+.|+.+. .|++...+|+++||++........ .......|..+.+..+|
T Consensus 64 ~~I~If~~s-G~lL~~~~w~~~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~G-- 139 (829)
T KOG2280|consen 64 PYIRIFNIS-GQLLGRILWKHGELIGMGWSDDE-ELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNG-- 139 (829)
T ss_pred eeEEEEecc-ccchHHHHhcCCCeeeecccCCc-eEEEEeccceEEEeecchhhhcccccccccccCceeEEEEecCc--
Confidence 347788765 44444444444588899999665 555667899999999764332221 12233345555555444
Q ss_pred EEEEECCCcEEEEECCCCeeEEEecc-cCCce--EEEEEcCCCC---EEEEEe-CCCcEEEEECCCC-ceeEEeccCCCc
Q 005096 243 FCSCSDDTTVKVWDFARCQEERSLTG-HGWDV--KSVDWHPTKS---LLVSGG-KDSLVKLWDAKSG-RELCSFHGHKNM 314 (715)
Q Consensus 243 Las~s~Dg~V~iwdl~~~~~~~~l~~-~~~~I--~si~~spdg~---~L~sgs-~Dg~I~iwDl~s~-~~~~~~~~~~~~ 314 (715)
+++-..+|.|.+.+-.....++++.. ..... +|-+...++. .|+-.. ..+ ..++-..+. .....+......
T Consensus 140 Vavlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q~~~~~~~~~~ 218 (829)
T KOG2280|consen 140 VAVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESRVQLHALSWPNSS 218 (829)
T ss_pred eEEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceecccccccccCCCCce
Confidence 44444555555544322222233222 11111 2222222221 111111 111 112222211 112223333466
Q ss_pred eEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCC-CeEEEEEc
Q 005096 315 VLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRK-DVTALAWH 363 (715)
Q Consensus 315 I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~-~V~~l~~s 363 (715)
+..+++|++.++|+.-..+|.|.+-+++..+++..+..... .-..++|+
T Consensus 219 ~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~p~qm~Wc 268 (829)
T KOG2280|consen 219 VVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHDPPKQMAWC 268 (829)
T ss_pred EEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCCchHhceee
Confidence 88899999999999999999999999988888877764332 22255665
|
|
| >COG5290 IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.29 Score=56.03 Aligned_cols=224 Identities=12% Similarity=0.183 Sum_probs=115.4
Q ss_pred CCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce-EEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCce
Q 005096 142 KNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNF-EMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNV 220 (715)
Q Consensus 142 ~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~-~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~ 220 (715)
.|-..++.+.|.-++--++....|-+ ..+. ..++..-+..|...+||.|.+.++....+..|.+++..-.-.
T Consensus 74 ~hf~~~~~~~f~~~~gDii~~~~dp~-------p~e~~~eivG~v~nGIvaa~wS~DE~~~cvvt~~r~il~~~k~fd~i 146 (1243)
T COG5290 74 KHFHVLTFEYFLIDEGDIIHLVNDPT-------PAELEMEIVGKVSNGIVAASWSADEKTWCVVTSTREILLFDKYFDPI 146 (1243)
T ss_pred hhhhhhheeeEEecCCcEEEEEcCCC-------cccchhhhhccccCceEEEeeccCCceEEEEEcCceEEEEecccccc
Confidence 45666677776665544444444332 1111 222233457788899999999777777777888776321100
Q ss_pred ee-eec----CCCCCeEEEEEec-----------------------CCCEEEEEECCCcEEEE--ECCC--------C--
Q 005096 221 KA-NKS----AHKESVRDLSFCR-----------------------TDLKFCSCSDDTTVKVW--DFAR--------C-- 260 (715)
Q Consensus 221 ~~-~~~----~h~~~I~~l~~sp-----------------------d~~~Las~s~Dg~V~iw--dl~~--------~-- 260 (715)
.. .++ ..-+.-..+.|.. |...|.....+.++..| |.+- .
T Consensus 147 se~~L~~~dl~ef~khi~VgWgkketqfrgk~~raqlrdptmp~~vD~G~l~avd~~k~~i~wrgD~~y~~v~r~Ee~pr 226 (1243)
T COG5290 147 SEYHLKKSDLVEFGKHIRVGWGKKETQFRGKGARAQLRDPTMPYMVDYGDLFAVDTNKKIIFWRGDTEYNLVGRSEERPR 226 (1243)
T ss_pred chhhcchhHHHHhccceEeeecccchhccccchhhhccCCCCcccccccceeEeeCCceEEEEccCcceeeecchhcccc
Confidence 00 000 0000111222321 11223344445566667 3210 0
Q ss_pred eeEEEec------ccC----CceEEEEEcCCCCEEEEEeCCCc-----EEEEECC---CCceeEEeccCCCceEEEEEcC
Q 005096 261 QEERSLT------GHG----WDVKSVDWHPTKSLLVSGGKDSL-----VKLWDAK---SGRELCSFHGHKNMVLCVKWNQ 322 (715)
Q Consensus 261 ~~~~~l~------~~~----~~I~si~~spdg~~L~sgs~Dg~-----I~iwDl~---s~~~~~~~~~~~~~I~sl~~sp 322 (715)
...+.+. ... +.-..++|-|.|..+++-..||. |.++.-+ -|+.-.. .+....+..++|+-
T Consensus 227 ra~rvysreg~lds~sep~~g~e~~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrHGef~lr-~~~dEk~~~~~wn~ 305 (1243)
T COG5290 227 RAFRVYSREGQLDSASEPVTGMEHQLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRHGEFDLR-VGCDEKAFLENWNL 305 (1243)
T ss_pred cceeeeccccccccccCCcccchhccccccCCceeeeeccCCCCCcceEEEEccCCcccCCcccc-CCchhhhhhhhhhH
Confidence 0011111 111 11234899999999998775553 5555432 1221111 12344567778876
Q ss_pred CCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEe
Q 005096 323 NGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGS 374 (715)
Q Consensus 323 dg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs 374 (715)
....++++ ..+.|++|-..+..-.......-..+.-+.|+|...+.|...+
T Consensus 306 ~s~vlav~-~~n~~~lwttkNyhWYLK~e~~ip~~s~vkwhpe~~nTl~f~d 356 (1243)
T COG5290 306 LSTVLAVA-EGNLLKLWTTKNYHWYLKVERQIPGISYVKWHPEEKNTLLFRD 356 (1243)
T ss_pred HHHHHHHh-hcceEEEEEccceEEEEEEeecCCCcceeeeccccCcEEEEec
Confidence 66555554 4678999998776555444445566778888886555544433
|
|
| >PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins | Back alignment and domain information |
|---|
Probab=95.86 E-value=3.8 Score=46.46 Aligned_cols=116 Identities=11% Similarity=0.101 Sum_probs=62.7
Q ss_pred EEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCC---ceEEEEEcCCCCEEEEEeC-------------CCcEEEE
Q 005096 234 LSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGW---DVKSVDWHPTKSLLVSGGK-------------DSLVKLW 297 (715)
Q Consensus 234 l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~---~I~si~~spdg~~L~sgs~-------------Dg~I~iw 297 (715)
+...++|.+++... ..++.+|+. ++.+..+..... .-.++...++|++|+.+.. +..|..+
T Consensus 153 ~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivev 229 (477)
T PF05935_consen 153 FKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEV 229 (477)
T ss_dssp EEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE
T ss_pred eeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCcccccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEE
Confidence 56667887776555 678888875 444444432221 1356778889998887772 1235666
Q ss_pred ECCCCceeEEecc--C-----------------------C--CceEEEEEcCCCCEEEEEEC-CCeEEEEECCCCeEEEE
Q 005096 298 DAKSGRELCSFHG--H-----------------------K--NMVLCVKWNQNGNWVLTASK-DQIIKLYDIRAMKELES 349 (715)
Q Consensus 298 Dl~s~~~~~~~~~--~-----------------------~--~~I~sl~~spdg~~Lasgs~-dg~I~iwDl~t~~~~~~ 349 (715)
| .+|+.+..+.. | . --++++.+.+..+.|++.+. -..|...|.++++....
T Consensus 230 d-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wi 308 (477)
T PF05935_consen 230 D-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWI 308 (477)
T ss_dssp --TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEE
T ss_pred C-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEE
Confidence 6 67776655421 1 0 12789999884444555554 55899999889888877
Q ss_pred eecC
Q 005096 350 FRGH 353 (715)
Q Consensus 350 ~~~h 353 (715)
+..+
T Consensus 309 lg~~ 312 (477)
T PF05935_consen 309 LGPP 312 (477)
T ss_dssp ES-S
T ss_pred eCCC
Confidence 7544
|
Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A. |
| >KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.89 Score=52.91 Aligned_cols=15 Identities=20% Similarity=0.078 Sum_probs=7.3
Q ss_pred CCCCCCCCCCCCCCC
Q 005096 681 QMPMMPGYNPFQSGN 695 (715)
Q Consensus 681 ~~~~~~~~~~~~~~~ 695 (715)
-.++|++..|+++..
T Consensus 183 ~~~~~~~a~pp~a~~ 197 (1007)
T KOG1984|consen 183 RASGMPPAFPPGAQM 197 (1007)
T ss_pred cCCCCCCCCCCccCC
Confidence 334555555555444
|
|
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=95.79 E-value=2.6 Score=42.99 Aligned_cols=222 Identities=10% Similarity=0.017 Sum_probs=132.2
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEE--
Q 005096 188 AIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERS-- 265 (715)
Q Consensus 188 ~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~-- 265 (715)
.-..|+-.+||..-+++...+.|--.|-.+++....-.+....-..|..-+|+..-++-+.. .|.-+|-++.+..+.
T Consensus 63 ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f~l 141 (353)
T COG4257 63 APFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRFPL 141 (353)
T ss_pred CccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEeec
Confidence 34567778888888888888888888888888887776777777788888888776664444 455556555433321
Q ss_pred -ecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEecc-CCCceEEEEEcCCCCEEEEEECCCeEEEEECCC
Q 005096 266 -LTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHG-HKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRA 343 (715)
Q Consensus 266 -l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~-~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t 343 (715)
.+.-........|+++|++-+++.. |.---.|-.+ ..+.++.. ....-..|+..+||...++.-.++.|-..|..+
T Consensus 142 p~~~a~~nlet~vfD~~G~lWFt~q~-G~yGrLdPa~-~~i~vfpaPqG~gpyGi~atpdGsvwyaslagnaiaridp~~ 219 (353)
T COG4257 142 PLEHADANLETAVFDPWGNLWFTGQI-GAYGRLDPAR-NVISVFPAPQGGGPYGICATPDGSVWYASLAGNAIARIDPFA 219 (353)
T ss_pred ccccCCCcccceeeCCCccEEEeecc-ccceecCccc-CceeeeccCCCCCCcceEECCCCcEEEEeccccceEEccccc
Confidence 1223456788899999998887753 2211112211 12233321 223356788889999888777778888888776
Q ss_pred CeEEEEee---cCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEE
Q 005096 344 MKELESFR---GHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLC 414 (715)
Q Consensus 344 ~~~~~~~~---~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~ 414 (715)
+.. ..+. ........+-.++ -+...++....+.+..||-........-+.+.+..-.++.....++.-.
T Consensus 220 ~~a-ev~p~P~~~~~gsRriwsdp-ig~~wittwg~g~l~rfdPs~~sW~eypLPgs~arpys~rVD~~grVW~ 291 (353)
T COG4257 220 GHA-EVVPQPNALKAGSRRIWSDP-IGRAWITTWGTGSLHRFDPSVTSWIEYPLPGSKARPYSMRVDRHGRVWL 291 (353)
T ss_pred CCc-ceecCCCcccccccccccCc-cCcEEEeccCCceeeEeCcccccceeeeCCCCCCCcceeeeccCCcEEe
Confidence 622 2221 1122333444444 5666677667777777776554432222222333344444444444333
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.38 Score=55.02 Aligned_cols=197 Identities=11% Similarity=0.118 Sum_probs=98.4
Q ss_pred CcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEE---ecccCCceEEEEEcCCCCE
Q 005096 208 GAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERS---LTGHGWDVKSVDWHPTKSL 284 (715)
Q Consensus 208 g~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~---l~~~~~~I~si~~spdg~~ 284 (715)
-.|+||++.. .+...+......+..+.|+.+ ..|++...||+++||++........ +......|..+.+..+|
T Consensus 64 ~~I~If~~sG-~lL~~~~w~~~~lI~mgWs~~-eeLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~G-- 139 (829)
T KOG2280|consen 64 PYIRIFNISG-QLLGRILWKHGELIGMGWSDD-EELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNG-- 139 (829)
T ss_pred eeEEEEeccc-cchHHHHhcCCCeeeecccCC-ceEEEEeccceEEEeecchhhhcccccccccccCceeEEEEecCc--
Confidence 4577777653 333333333447888999865 4577788999999999853322221 12223345444444344
Q ss_pred EEEEeCCCcEEEEECCCCceeEEecc-CCCce--EEEEEcCCCC---EEEEEE-CCCeEEEEECCCC-eEEEEeecCCCC
Q 005096 285 LVSGGKDSLVKLWDAKSGRELCSFHG-HKNMV--LCVKWNQNGN---WVLTAS-KDQIIKLYDIRAM-KELESFRGHRKD 356 (715)
Q Consensus 285 L~sgs~Dg~I~iwDl~s~~~~~~~~~-~~~~I--~sl~~spdg~---~Lasgs-~dg~I~iwDl~t~-~~~~~~~~h~~~ 356 (715)
+++-..+|.|.+.+-.....++++.. ..... +|-+...++. .|+-.. ..+ ..++-..+. .....+......
T Consensus 140 Vavlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q~~~~~~~~~~ 218 (829)
T KOG2280|consen 140 VAVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESRVQLHALSWPNSS 218 (829)
T ss_pred eEEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceecccccccccCCCCce
Confidence 33333445554443222222233221 11111 2222222211 111111 000 011111111 112223333467
Q ss_pred eEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCC
Q 005096 357 VTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIG 410 (715)
Q Consensus 357 V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg 410 (715)
+..+++|+ +..+|+--..+|.|.+-+++.......+.......-..++|..+.
T Consensus 219 ~~ki~VS~-n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~p~qm~Wcgnd 271 (829)
T KOG2280|consen 219 VVKISVSP-NRRFLALYTETGKIWVVSIDLSQILCEFNCTDHDPPKQMAWCGND 271 (829)
T ss_pred EEEEEEcC-CcceEEEEecCCcEEEEecchhhhhhccCCCCCCchHhceeecCC
Confidence 88899998 899999999999999988877666555443323333356665443
|
|
| >PLN02193 nitrile-specifier protein | Back alignment and domain information |
|---|
Probab=95.74 E-value=1.7 Score=49.19 Aligned_cols=189 Identities=8% Similarity=-0.029 Sum_probs=89.6
Q ss_pred CCCEEEEEeCC-------CeEEEEeCCCCceEEEEec--cC--CCEEEEEEcCCCCEEEEEeCC-----CcEEEEeCCCC
Q 005096 155 TGRRLITGSQS-------GEFTLWNGQSFNFEMILQA--HD--HAIRSMVWSHNDNWMVSGDDG-----GAIKYWQNNMN 218 (715)
Q Consensus 155 dg~~Latgs~d-------g~I~Iwd~~~~~~~~~l~~--h~--~~V~~l~~spdg~~L~tgs~d-----g~I~iwd~~~~ 218 (715)
++.+++.|+.+ ..+.+||+++.+....-.. .. ......+..-++++++.|+.+ ..+.+||+.+.
T Consensus 175 ~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~ 254 (470)
T PLN02193 175 GNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTN 254 (470)
T ss_pred CCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCC
Confidence 34555666643 2477888877544321110 00 111111112245666777654 35778888775
Q ss_pred ceeeeecC---CCCCeEEEEEecCCCEEEEEECC-----CcEEEEECCCCeeEEEec-----ccCCceEEEEEcCCCCEE
Q 005096 219 NVKANKSA---HKESVRDLSFCRTDLKFCSCSDD-----TTVKVWDFARCQEERSLT-----GHGWDVKSVDWHPTKSLL 285 (715)
Q Consensus 219 ~~~~~~~~---h~~~I~~l~~spd~~~Las~s~D-----g~V~iwdl~~~~~~~~l~-----~~~~~I~si~~spdg~~L 285 (715)
+-...... ........+..-++++++.|+.+ ..+.+||+.+.+-...-. ........+.+ +++++
T Consensus 255 ~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~--~gkiy 332 (470)
T PLN02193 255 EWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVV--QGKVW 332 (470)
T ss_pred EEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEE--CCcEE
Confidence 43322111 01111111222355666666654 346778876654322110 01111122222 46777
Q ss_pred EEEeCC----CcEEEEECCCCceeEEecc----CCCceEEEEEcCCCCEEEEEECC--------------CeEEEEECCC
Q 005096 286 VSGGKD----SLVKLWDAKSGRELCSFHG----HKNMVLCVKWNQNGNWVLTASKD--------------QIIKLYDIRA 343 (715)
Q Consensus 286 ~sgs~D----g~I~iwDl~s~~~~~~~~~----~~~~I~sl~~spdg~~Lasgs~d--------------g~I~iwDl~t 343 (715)
+.++.+ ..|.+||+.+.+-...-.. ......+++ .-++++++.|+.+ ..+.+||+.+
T Consensus 333 viGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t 411 (470)
T PLN02193 333 VVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASA-AVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTET 411 (470)
T ss_pred EEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEE-EECCEEEEECCccCCccccccCccceeccEEEEEcCc
Confidence 777655 4588999987653322110 111122222 2256677777643 2478888876
Q ss_pred CeE
Q 005096 344 MKE 346 (715)
Q Consensus 344 ~~~ 346 (715)
.+-
T Consensus 412 ~~W 414 (470)
T PLN02193 412 LQW 414 (470)
T ss_pred CEE
Confidence 543
|
|
| >PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast) | Back alignment and domain information |
|---|
Probab=95.73 E-value=2.7 Score=48.55 Aligned_cols=161 Identities=14% Similarity=0.162 Sum_probs=88.4
Q ss_pred CCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEE--Eecc-cC------CceEEEEEcCCCCEEEEEeC-C---Cc
Q 005096 227 HKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEER--SLTG-HG------WDVKSVDWHPTKSLLVSGGK-D---SL 293 (715)
Q Consensus 227 h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~--~l~~-~~------~~I~si~~spdg~~L~sgs~-D---g~ 293 (715)
.++.|..|.|..+++.+++...+|.|.+||........ .+.. +. .-|.........+++++.+. + -.
T Consensus 128 l~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~ 207 (670)
T PF10395_consen 128 LDDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLS 207 (670)
T ss_pred cccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEE
Confidence 47789999999999999999999999999993322211 1111 11 11222221122345554444 3 24
Q ss_pred EEEEECC-CCceeEEec---cCCCce--EEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecC-----C-CCeEEEE
Q 005096 294 VKLWDAK-SGRELCSFH---GHKNMV--LCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGH-----R-KDVTALA 361 (715)
Q Consensus 294 I~iwDl~-s~~~~~~~~---~~~~~I--~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h-----~-~~V~~l~ 361 (715)
++++.+. +...+..+. .+.... ..+++. +|.+... .+++|.+|++-..+...++... . ..+.++.
T Consensus 208 ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~-~G~LY~l--~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~ 284 (670)
T PF10395_consen 208 YKLISLSNESSSIFELSSTILENFGLEDSKFCYQ-FGKLYQL--SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLK 284 (670)
T ss_pred EEEEEeccCCcceEEeehheeccCCcccceEEEe-CCEEEEE--eCCEEEEEEcCCceEEEEEEechhhccccccceEee
Confidence 6777771 122222222 112222 233333 4543333 6889999999888776665422 1 2333443
Q ss_pred EccCCCCEEEEEeCCCcEEEEEcCCCCceEEE
Q 005096 362 WHPFHEEYFVSGSLDGSIFHWLVGHETPQVEI 393 (715)
Q Consensus 362 ~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~ 393 (715)
--. .+++|++ .+..|++.|+.....+.++
T Consensus 285 ~~s-~nRvLLs--~~nkIyLld~~~~siLse~ 313 (670)
T PF10395_consen 285 PPS-PNRVLLS--VNNKIYLLDLKFESILSEF 313 (670)
T ss_pred cCC-CCeEEEE--cCCEEEEEeehhhhhhhhh
Confidence 222 3555553 3568999998765544333
|
It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex []. |
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.24 Score=54.06 Aligned_cols=143 Identities=10% Similarity=0.095 Sum_probs=90.5
Q ss_pred CCCCEEE-EEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCE-------EEEEECCCcEEEEECCC-CeeEEEe
Q 005096 196 HNDNWMV-SGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLK-------FCSCSDDTTVKVWDFAR-CQEERSL 266 (715)
Q Consensus 196 pdg~~L~-tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~-------Las~s~Dg~V~iwdl~~-~~~~~~l 266 (715)
.|.++|+ .+.....++-.|++.++++..+..+... -+.|.++.+. -++|-.+..|.-.|-+- +..+...
T Consensus 477 ~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~ 554 (776)
T COG5167 477 NDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVV 554 (776)
T ss_pred CCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeee
Confidence 3445554 4555567777889999999888777665 4566664321 23344455555556532 2222221
Q ss_pred c----ccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECC
Q 005096 267 T----GHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIR 342 (715)
Q Consensus 267 ~----~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~ 342 (715)
. .......|..-. ...++++++..|.|++||--..+....+.+....|..|..+.+|++|++.| ...|.+-|++
T Consensus 555 esKdY~tKn~Fss~~tT-esGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTC-k~yllL~d~~ 632 (776)
T COG5167 555 ESKDYKTKNKFSSGMTT-ESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATC-KNYLLLTDVP 632 (776)
T ss_pred eehhccccccccccccc-cCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEee-cceEEEEecc
Confidence 1 112233333333 345899999999999999654444445566677899999999999998887 4577787875
|
|
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.16 Score=55.30 Aligned_cols=142 Identities=11% Similarity=0.092 Sum_probs=90.9
Q ss_pred CCCCEEE-EEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCC--------CEEEEEeCCCcEEEEeCCC-C-ceee
Q 005096 154 PTGRRLI-TGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHND--------NWMVSGDDGGAIKYWQNNM-N-NVKA 222 (715)
Q Consensus 154 pdg~~La-tgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg--------~~L~tgs~dg~I~iwd~~~-~-~~~~ 222 (715)
.|..+|+ .|.....++-.|++.++.+..+..|+.. -+.|.|+. ..|+ |-.+..|.-.|-.. + ++..
T Consensus 477 ~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlv-GlS~~svFrIDPR~~gNKi~v 553 (776)
T COG5167 477 NDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLV-GLSDYSVFRIDPRARGNKIKV 553 (776)
T ss_pred CCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEE-eecccceEEecccccCCceee
Confidence 3444444 4555667888899999999999988766 45666643 2343 44444444444332 2 2111
Q ss_pred ee-c--CCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 005096 223 NK-S--AHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDA 299 (715)
Q Consensus 223 ~~-~--~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl 299 (715)
.- + ..+....+..-. .+.+||+++..|.|++||--.......+.+.+..|..|..+.+|++|++.|. .+|.+-|+
T Consensus 554 ~esKdY~tKn~Fss~~tT-esGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~ 631 (776)
T COG5167 554 VESKDYKTKNKFSSGMTT-ESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCK-NYLLLTDV 631 (776)
T ss_pred eeehhccccccccccccc-cCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeec-ceEEEEec
Confidence 11 0 112222333222 4568999999999999996544445566777889999999999998887776 66778776
Q ss_pred C
Q 005096 300 K 300 (715)
Q Consensus 300 ~ 300 (715)
+
T Consensus 632 ~ 632 (776)
T COG5167 632 P 632 (776)
T ss_pred c
Confidence 5
|
|
| >PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A | Back alignment and domain information |
|---|
Probab=95.49 E-value=6.2 Score=45.09 Aligned_cols=231 Identities=10% Similarity=0.067 Sum_probs=118.3
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCCCc--eeeeecCC-CCCeEEEEEecCC-CEEEEEEC--CCcEEEEECCCCeeEEEecc
Q 005096 195 SHNDNWMVSGDDGGAIKYWQNNMNN--VKANKSAH-KESVRDLSFCRTD-LKFCSCSD--DTTVKVWDFARCQEERSLTG 268 (715)
Q Consensus 195 spdg~~L~tgs~dg~I~iwd~~~~~--~~~~~~~h-~~~I~~l~~spd~-~~Las~s~--Dg~V~iwdl~~~~~~~~l~~ 268 (715)
..++..++.+.++|.+.+..+.... ......+. ....+++++..++ .+|+.|+. |+.+..|.....+.+..+.
T Consensus 219 ~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~~- 297 (504)
T PF10433_consen 219 DKDGDRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDSLP- 297 (504)
T ss_dssp STTSSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEEEE--
T ss_pred cCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEecc-
Confidence 4456788899999999988776544 22222222 4556677777655 36777776 4455556644445555554
Q ss_pred cCCceEEEEEcCC----CC------EEEEEe---CCCcEEEEECCCCceeE----EeccC--CCceEEEEEcC-CCCEEE
Q 005096 269 HGWDVKSVDWHPT----KS------LLVSGG---KDSLVKLWDAKSGRELC----SFHGH--KNMVLCVKWNQ-NGNWVL 328 (715)
Q Consensus 269 ~~~~I~si~~spd----g~------~L~sgs---~Dg~I~iwDl~s~~~~~----~~~~~--~~~I~sl~~sp-dg~~La 328 (715)
.-+.|.++++... .. .|++++ .+|.|++.. .|-.+. ..... -..++.+.... +..+|+
T Consensus 298 N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr--~Gi~~~~~~~~~~~l~~v~~iW~l~~~~~~~~~lv 375 (504)
T PF10433_consen 298 NWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILR--NGIGIEGLELASSELPGVTGIWTLKLSSSDHSYLV 375 (504)
T ss_dssp ---SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEE--ESBEEE--EEEEEEESTEEEEEEE-SSSSSBSEEE
T ss_pred CcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEe--ccCCceeeeeeccCCCCceEEEEeeecCCCceEEE
Confidence 4457888887531 11 455554 467788773 222222 11111 23455555433 256777
Q ss_pred EEECCCeEEEEECC---CCeEEEEee--cCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEE
Q 005096 329 TASKDQIIKLYDIR---AMKELESFR--GHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWD 403 (715)
Q Consensus 329 sgs~dg~I~iwDl~---t~~~~~~~~--~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~ 403 (715)
++..+ .-+|+.+. ..+.+..+. +.......|......+..++=.... .|++.+....+............|.+
T Consensus 376 ~S~~~-~T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~~~~ivQVt~~-~i~l~~~~~~~~~~~w~~~~~~~I~~ 453 (504)
T PF10433_consen 376 LSFPN-ETRVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVGDGRIVQVTPK-GIRLIDLEDGKLTQEWKPPAGSIIVA 453 (504)
T ss_dssp EEESS-EEEEEEES----SSEEEEE---TS-SSS-EEEEEEETTTEEEEEESS-EEEEEESSSTSEEEEEE-TTS---SE
T ss_pred EEcCC-ceEEEEEecccCCcchhhhhhccCCCCCCCeEEEEcCCCeEEEEecC-eEEEEECCCCeEEEEEeCCCCCeEEE
Confidence 76655 44566553 333332221 2222222333222235566655544 57788876655544443334556666
Q ss_pred EEEcCCCCEEEEEECCCeEEEEecCCCCC
Q 005096 404 LAWHPIGYLLCSGSNDHTTKFWCRNRPGD 432 (715)
Q Consensus 404 l~~spdg~~L~sgs~Dg~I~iWdl~~~~~ 432 (715)
.+++ +.+++.+..++.+.++.++....
T Consensus 454 a~~~--~~~v~v~~~~~~~~~~~~~~~~~ 480 (504)
T PF10433_consen 454 ASIN--DPQVLVALSGGELVYFELDDNKI 480 (504)
T ss_dssp EEES--SSEEEEEE-TTEEEEEEEETTEE
T ss_pred EEEC--CCEEEEEEeCCcEEEEEEECCce
Confidence 6664 45677777789999998865444
|
... |
| >PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12 | Back alignment and domain information |
|---|
Probab=95.39 E-value=4.1 Score=42.79 Aligned_cols=166 Identities=11% Similarity=0.122 Sum_probs=92.7
Q ss_pred cEEEEECCCCeeEEEecc------cCCceEEEEEcCCC-----CEEEEEe-CCCcEEEEECCCCceeEEeccC-------
Q 005096 251 TVKVWDFARCQEERSLTG------HGWDVKSVDWHPTK-----SLLVSGG-KDSLVKLWDAKSGRELCSFHGH------- 311 (715)
Q Consensus 251 ~V~iwdl~~~~~~~~l~~------~~~~I~si~~spdg-----~~L~sgs-~Dg~I~iwDl~s~~~~~~~~~~------- 311 (715)
+|.+||+.+.+.++++.- ....+..+.+.... .+++.+. ..+-|.|+|+++++..+.+..+
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 577888888887776642 24567788877632 2333333 3357999999998765554321
Q ss_pred ------------CCceEEEEEcC---CCCEEEEEECCC-eEEEEEC---CCCe---------EEEEeecCCCCeEEEEEc
Q 005096 312 ------------KNMVLCVKWNQ---NGNWVLTASKDQ-IIKLYDI---RAMK---------ELESFRGHRKDVTALAWH 363 (715)
Q Consensus 312 ------------~~~I~sl~~sp---dg~~Lasgs~dg-~I~iwDl---~t~~---------~~~~~~~h~~~V~~l~~s 363 (715)
...+..++.++ ++++|+.....+ .++-... ++.. .+..+-........++++
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D 194 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAID 194 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEEE
T ss_pred cceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEEEEEHHHhhCccccccccccccceeccccCCCCceEEEC
Confidence 12356666655 667777766444 2222221 1111 112221112456677888
Q ss_pred cCCCCEEEEEeCCCcEEEEEcCCCCc---eEEEeecc--CCCEEEEEEcC--CCCEEEEEE
Q 005096 364 PFHEEYFVSGSLDGSIFHWLVGHETP---QVEIHNVH--DNTVWDLAWHP--IGYLLCSGS 417 (715)
Q Consensus 364 p~~~~~l~sgs~DG~I~iwd~~~~~~---~~~~~~~h--~~~V~~l~~sp--dg~~L~sgs 417 (715)
+ ++.++++--..+.|..|+.+.... ...+.... -..+.++.+.. +|.+.+.+.
T Consensus 195 ~-~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~sn 254 (287)
T PF03022_consen 195 P-NGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLSN 254 (287)
T ss_dssp T-TTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE-
T ss_pred C-CCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEEC
Confidence 7 888888888899999999876321 11222221 24678888888 666555543
|
5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B. |
| >PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3 | Back alignment and domain information |
|---|
Probab=95.37 E-value=4.4 Score=43.96 Aligned_cols=187 Identities=14% Similarity=0.119 Sum_probs=109.2
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEe----cCCCE--EEEEE-CC---CcEEEEECC--CCeeEE
Q 005096 197 NDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFC----RTDLK--FCSCS-DD---TTVKVWDFA--RCQEER 264 (715)
Q Consensus 197 dg~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~s----pd~~~--Las~s-~D---g~V~iwdl~--~~~~~~ 264 (715)
...+|+....++-+.+||+....+.. +. ...++.+.+. -+++. |++++ .+ .+|++|.+. ++. +.
T Consensus 67 ~kSlIigTdK~~GL~VYdL~Gk~lq~-~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~-L~ 142 (381)
T PF02333_consen 67 AKSLIIGTDKKGGLYVYDLDGKELQS-LP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGE-LT 142 (381)
T ss_dssp GG-EEEEEETTTEEEEEETTS-EEEE-E---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTE-EE
T ss_pred ccceEEEEeCCCCEEEEcCCCcEEEe-ec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCc-ce
Confidence 45678888888999999998665433 32 2334444332 13333 44444 32 469999874 333 33
Q ss_pred Eecc-------cCCceEEEEEc--C-CCC-EEEEEeCCCcEEEEECC---CC----ceeEEeccCCCceEEEEEcCCCCE
Q 005096 265 SLTG-------HGWDVKSVDWH--P-TKS-LLVSGGKDSLVKLWDAK---SG----RELCSFHGHKNMVLCVKWNQNGNW 326 (715)
Q Consensus 265 ~l~~-------~~~~I~si~~s--p-dg~-~L~sgs~Dg~I~iwDl~---s~----~~~~~~~~~~~~I~sl~~spdg~~ 326 (715)
.+.. ....+..+|+. + ++. ++++...+|.+..|.+. .+ +.+++|.. ...+..|.......+
T Consensus 143 ~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~-~sQ~EGCVVDDe~g~ 221 (381)
T PF02333_consen 143 DVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV-GSQPEGCVVDDETGR 221 (381)
T ss_dssp E-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE--SS-EEEEEEETTTTE
T ss_pred EcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC-CCcceEEEEecccCC
Confidence 3221 22346677764 3 344 66677889988887664 33 34667763 457888888888889
Q ss_pred EEEEECCCeEEEEECCC-----CeEEEEeec--CCCCeEEEEEcc--CCC-CEEEEEeCCCcEEEEEcCCCC
Q 005096 327 VLTASKDQIIKLYDIRA-----MKELESFRG--HRKDVTALAWHP--FHE-EYFVSGSLDGSIFHWLVGHET 388 (715)
Q Consensus 327 Lasgs~dg~I~iwDl~t-----~~~~~~~~~--h~~~V~~l~~sp--~~~-~~l~sgs~DG~I~iwd~~~~~ 388 (715)
|+++-++.-|+-|+.+- .+.+....+ ....|-.|++-. ++. .+|++.-.+++..||+.....
T Consensus 222 LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~~ 293 (381)
T PF02333_consen 222 LYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGPN 293 (381)
T ss_dssp EEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT-
T ss_pred EEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCCC
Confidence 99999999898888862 223333322 346788887753 222 355555567889999987543
|
1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A. |
| >PRK14131 N-acetylneuraminic acid mutarotase; Provisional | Back alignment and domain information |
|---|
Probab=95.36 E-value=2.1 Score=46.86 Aligned_cols=11 Identities=18% Similarity=0.274 Sum_probs=8.0
Q ss_pred cEEEEECCCCc
Q 005096 293 LVKLWDAKSGR 303 (715)
Q Consensus 293 ~I~iwDl~s~~ 303 (715)
.|.+||..+.+
T Consensus 190 ~v~~YD~~t~~ 200 (376)
T PRK14131 190 EVLSYDPSTNQ 200 (376)
T ss_pred eEEEEECCCCe
Confidence 47888987654
|
|
| >PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins | Back alignment and domain information |
|---|
Probab=95.30 E-value=3 Score=47.25 Aligned_cols=111 Identities=16% Similarity=0.209 Sum_probs=60.9
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCc---eEEEEEcCCCCEEEEEEC-------------CCeEEEE
Q 005096 276 VDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNM---VLCVKWNQNGNWVLTASK-------------DQIIKLY 339 (715)
Q Consensus 276 i~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~---I~sl~~spdg~~Lasgs~-------------dg~I~iw 339 (715)
+...++|.+++... ..++.+|+. |+.+..+...... =..+...++|++|+.+.. +..|..+
T Consensus 153 ~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivev 229 (477)
T PF05935_consen 153 FKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEV 229 (477)
T ss_dssp EEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE
T ss_pred eeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCcccccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEE
Confidence 66677888776555 788899986 6666655432211 245677889999888772 1246666
Q ss_pred ECCCCeEEEEeec--C----C---------------------CCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCce
Q 005096 340 DIRAMKELESFRG--H----R---------------------KDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQ 390 (715)
Q Consensus 340 Dl~t~~~~~~~~~--h----~---------------------~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~ 390 (715)
| .+|+.+..+.. | . -.++++.+.+.++.+|+++-.-..|...|.++++..
T Consensus 230 d-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~ 306 (477)
T PF05935_consen 230 D-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIK 306 (477)
T ss_dssp --TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EE
T ss_pred C-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEE
Confidence 7 77777666431 1 0 137889998866666666655557877776665443
|
Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A. |
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.062 Score=39.69 Aligned_cols=30 Identities=20% Similarity=0.444 Sum_probs=28.0
Q ss_pred CccEEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 005096 144 RCSINRVLWTPTGRRLITGSQSGEFTLWNG 173 (715)
Q Consensus 144 ~~~I~~l~~spdg~~Latgs~dg~I~Iwd~ 173 (715)
...|.+++|+|+.++||.++.+|.|.|+.+
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl 40 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL 40 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC
Confidence 456999999999999999999999999998
|
|
| >TIGR03547 muta_rot_YjhT mutatrotase, YjhT family | Back alignment and domain information |
|---|
Probab=95.29 E-value=4.6 Score=43.57 Aligned_cols=53 Identities=11% Similarity=-0.056 Sum_probs=25.3
Q ss_pred CCCEEEEEECC-----------CcEEEEECCCCeeEEEecccCCceE--EEEEcCCCCEEEEEeCC
Q 005096 239 TDLKFCSCSDD-----------TTVKVWDFARCQEERSLTGHGWDVK--SVDWHPTKSLLVSGGKD 291 (715)
Q Consensus 239 d~~~Las~s~D-----------g~V~iwdl~~~~~~~~l~~~~~~I~--si~~spdg~~L~sgs~D 291 (715)
++++.+.|+.+ ..+..||..+.+-...-........ +.+..-++++.++|+.+
T Consensus 63 ~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~ 128 (346)
T TIGR03547 63 DGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVN 128 (346)
T ss_pred CCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcC
Confidence 56666666642 2477788766443222111111111 11112357777777754
|
Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein. |
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.56 Score=54.50 Aligned_cols=102 Identities=17% Similarity=0.174 Sum_probs=68.0
Q ss_pred CCCEEEEEECCCcEEEEECCC-------C----e---------eEEEecccCCceEEEEEc--CCCCEEEEEeCCCcEEE
Q 005096 239 TDLKFCSCSDDTTVKVWDFAR-------C----Q---------EERSLTGHGWDVKSVDWH--PTKSLLVSGGKDSLVKL 296 (715)
Q Consensus 239 d~~~Las~s~Dg~V~iwdl~~-------~----~---------~~~~l~~~~~~I~si~~s--pdg~~L~sgs~Dg~I~i 296 (715)
+...|++|.+||.|.+|.+++ . + ....+ .....++.++++ ...++||+++....|.|
T Consensus 113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~-~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTV 191 (717)
T PF08728_consen 113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHL-RVGASAWGLDIHDYKKSRLIAVSSNSQEVTV 191 (717)
T ss_pred CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEe-ecCCceeEEEEEecCcceEEEEecCCceEEE
Confidence 456788888888888886521 0 0 01111 234578899998 77788888888888888
Q ss_pred EECCC--CceeE-EeccCCCceEEEEEcCCC---C---EEEEEECCCeEEEEEC
Q 005096 297 WDAKS--GRELC-SFHGHKNMVLCVKWNQNG---N---WVLTASKDQIIKLYDI 341 (715)
Q Consensus 297 wDl~s--~~~~~-~~~~~~~~I~sl~~spdg---~---~Lasgs~dg~I~iwDl 341 (715)
|-+.. .+... .-..+...|-+|+|.++. . +|++++-.|.+.+|++
T Consensus 192 Faf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 192 FAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 75443 11111 111255678999997743 2 7888999999999888
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >KOG2100 consensus Dipeptidyl aminopeptidase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.19 E-value=5 Score=48.07 Aligned_cols=56 Identities=14% Similarity=0.172 Sum_probs=35.4
Q ss_pred EEcCCCCEEEEEeC---------CCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeC
Q 005096 151 LWTPTGRRLITGSQ---------SGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDD 206 (715)
Q Consensus 151 ~~spdg~~Latgs~---------dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~ 206 (715)
.+++|.++++++.. .+...+|++.++..........+.+.++.|++.++.|+..-.
T Consensus 103 ~~s~d~~~~~~~~~~~~~~rhs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wsp~~~~l~yv~~ 167 (755)
T KOG2100|consen 103 LISPDRKYILLGRNYKKRFRHSYTAKYHLYDLNTGEKLHPPEYEGSKIQYASWSPLGNDLAYVLH 167 (755)
T ss_pred ccChhhhhheeccCcccccceeeEEEEEEEEcCCCCcccCcccCCCeeEEEEEcCCCCEEEEEEe
Confidence 66777777666644 345677777776622222223455789999999977765543
|
|
| >PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12 | Back alignment and domain information |
|---|
Probab=95.19 E-value=3.1 Score=43.69 Aligned_cols=185 Identities=10% Similarity=0.119 Sum_probs=100.8
Q ss_pred cEEEEEEcCCCCEEE--EEeC----------CCeEEEEeCCCCceEEEEecc------CCCEEEEEEcCCC-----CEEE
Q 005096 146 SINRVLWTPTGRRLI--TGSQ----------SGEFTLWNGQSFNFEMILQAH------DHAIRSMVWSHND-----NWMV 202 (715)
Q Consensus 146 ~I~~l~~spdg~~La--tgs~----------dg~I~Iwd~~~~~~~~~l~~h------~~~V~~l~~spdg-----~~L~ 202 (715)
.|..+....++++-+ +|.- .-+|.+||+.+.+.++++... .+.+..+.+.... .+++
T Consensus 2 sV~~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aY 81 (287)
T PF03022_consen 2 SVQRVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAY 81 (287)
T ss_dssp -EEEEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEE
T ss_pred cccEEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEE
Confidence 366777777765433 2211 127999999999998887643 3457788876522 3444
Q ss_pred EEe-CCCcEEEEeCCCCceeeeecCC-------------------CCCeEEEEEec---CCCEEEEEECCC-cEEEEEC-
Q 005096 203 SGD-DGGAIKYWQNNMNNVKANKSAH-------------------KESVRDLSFCR---TDLKFCSCSDDT-TVKVWDF- 257 (715)
Q Consensus 203 tgs-~dg~I~iwd~~~~~~~~~~~~h-------------------~~~I~~l~~sp---d~~~Las~s~Dg-~V~iwdl- 257 (715)
.++ ..+.|.|+|+.+++..+.+..+ .+.+..++.++ +++.|+-..-.+ .++-...
T Consensus 82 ItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~ 161 (287)
T PF03022_consen 82 ITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTS 161 (287)
T ss_dssp EEETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHH
T ss_pred EeCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEEEEEHH
Confidence 443 3468999999988766555321 12244555544 445555444332 2222221
Q ss_pred --CCCe---------eEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC---ceeEEe--ccC-CCceEEEEE
Q 005096 258 --ARCQ---------EERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSG---RELCSF--HGH-KNMVLCVKW 320 (715)
Q Consensus 258 --~~~~---------~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~---~~~~~~--~~~-~~~I~sl~~ 320 (715)
.+.. .+..+-........++++++|.++++--..+.|..||.++. +....+ ... -.++..+++
T Consensus 162 ~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i 241 (287)
T PF03022_consen 162 VLRDPSLSDAQALASQVQDLGDKGSQSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKI 241 (287)
T ss_dssp HHCSTT--HHH-HHHT-EEEEE---SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE
T ss_pred HhhCccccccccccccceeccccCCCCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeee
Confidence 1110 11122111235567888899998888889999999998861 112222 212 357788999
Q ss_pred cC--CCCEEEEE
Q 005096 321 NQ--NGNWVLTA 330 (715)
Q Consensus 321 sp--dg~~Lasg 330 (715)
.. ++.+.+.+
T Consensus 242 ~~~~~g~L~v~s 253 (287)
T PF03022_consen 242 DPEGDGYLWVLS 253 (287)
T ss_dssp -T--TS-EEEEE
T ss_pred ccccCceEEEEE
Confidence 88 66655444
|
5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B. |
| >PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3 | Back alignment and domain information |
|---|
Probab=95.12 E-value=6.1 Score=42.89 Aligned_cols=193 Identities=16% Similarity=0.166 Sum_probs=110.5
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEc----CCCCE--E-EEEeCC---CcEEEEeCCC--Cceee
Q 005096 155 TGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWS----HNDNW--M-VSGDDG---GAIKYWQNNM--NNVKA 222 (715)
Q Consensus 155 dg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~s----pdg~~--L-~tgs~d---g~I~iwd~~~--~~~~~ 222 (715)
...+|+....++-+.+||++-. .+..+. .+.++.+..- -+++. | +++.++ ..|++|.+.. +.+..
T Consensus 67 ~kSlIigTdK~~GL~VYdL~Gk-~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~ 143 (381)
T PF02333_consen 67 AKSLIIGTDKKGGLYVYDLDGK-ELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTD 143 (381)
T ss_dssp GG-EEEEEETTTEEEEEETTS--EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE
T ss_pred ccceEEEEeCCCCEEEEcCCCc-EEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceE
Confidence 4567888888889999998754 444443 2344444332 13432 3 333333 4699997753 33322
Q ss_pred ee------cCCCCCeEEEEEec---CCC-EEEEEECCCcEEEEECC---CC----eeEEEecccCCceEEEEEcCCCCEE
Q 005096 223 NK------SAHKESVRDLSFCR---TDL-KFCSCSDDTTVKVWDFA---RC----QEERSLTGHGWDVKSVDWHPTKSLL 285 (715)
Q Consensus 223 ~~------~~h~~~I~~l~~sp---d~~-~Las~s~Dg~V~iwdl~---~~----~~~~~l~~~~~~I~si~~spdg~~L 285 (715)
.. ......+..+|+.. ++. ++++...+|.+..|.+. ++ +.++.|.. ...+..|..+....+|
T Consensus 144 v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~-~sQ~EGCVVDDe~g~L 222 (381)
T PF02333_consen 144 VTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV-GSQPEGCVVDDETGRL 222 (381)
T ss_dssp -CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE--SS-EEEEEEETTTTEE
T ss_pred cCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC-CCcceEEEEecccCCE
Confidence 11 11223467777743 344 56667889998888773 22 34666663 4578899999888899
Q ss_pred EEEeCCCcEEEEECCC--C---ceeEEec--cCCCceEEEEEcC--CC-CEEEEEE-CCCeEEEEECCC-CeEEEEee
Q 005096 286 VSGGKDSLVKLWDAKS--G---RELCSFH--GHKNMVLCVKWNQ--NG-NWVLTAS-KDQIIKLYDIRA-MKELESFR 351 (715)
Q Consensus 286 ~sgs~Dg~I~iwDl~s--~---~~~~~~~--~~~~~I~sl~~sp--dg-~~Lasgs-~dg~I~iwDl~t-~~~~~~~~ 351 (715)
+++-+|.-|.-|+.+- + +.+.... .....|..|++-. ++ .||++++ .+++..|||.+. ...+..|.
T Consensus 223 YvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~~~~~g~f~ 300 (381)
T PF02333_consen 223 YVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGPNAYVGSFR 300 (381)
T ss_dssp EEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT--EEEEEE
T ss_pred EEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCCCcccceEE
Confidence 9999998888888762 1 2222222 2345677777743 33 3666555 567899999874 34444443
|
1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A. |
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=95.08 E-value=1.8 Score=51.26 Aligned_cols=95 Identities=12% Similarity=0.208 Sum_probs=55.4
Q ss_pred CCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCC-CceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcee
Q 005096 143 NRCSINRVLWTPTGRRLITGSQSGEFTLWNGQS-FNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVK 221 (715)
Q Consensus 143 H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~-~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~ 221 (715)
-.-.|..|.++++|++|+..+..| |.|..+-. +.....+..-...|.|-.+.=+..++
T Consensus 83 ~~f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~-------------------- 141 (717)
T PF10168_consen 83 PLFEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFF-------------------- 141 (717)
T ss_pred CceeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhc--------------------
Confidence 345799999999999999998877 44444321 11111222222223332222111111
Q ss_pred eeecCCCCCeEEEEEecC---CCEEEEEECCCcEEEEECCCC
Q 005096 222 ANKSAHKESVRDLSFCRT---DLKFCSCSDDTTVKVWDFARC 260 (715)
Q Consensus 222 ~~~~~h~~~I~~l~~spd---~~~Las~s~Dg~V~iwdl~~~ 260 (715)
.......|..+.|+|. +..|++-+.|++||+||+...
T Consensus 142 --~~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 142 --TSNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred --cCCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCC
Confidence 1123445677788775 578888888999999998643
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=95.06 E-value=5.9 Score=42.46 Aligned_cols=142 Identities=10% Similarity=0.172 Sum_probs=82.6
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCc------EEEEeCCCC-----cee----eeecCCC--------CCeEEEEEecCCCEE
Q 005096 187 HAIRSMVWSHNDNWMVSGDDGGA------IKYWQNNMN-----NVK----ANKSAHK--------ESVRDLSFCRTDLKF 243 (715)
Q Consensus 187 ~~V~~l~~spdg~~L~tgs~dg~------I~iwd~~~~-----~~~----~~~~~h~--------~~I~~l~~spd~~~L 243 (715)
+.++.|.+.+++..+++.+++|. +..+++... ... ..+.... ....+|++..++.++
T Consensus 20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~~ 99 (326)
T PF13449_consen 20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSFW 99 (326)
T ss_pred CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCEE
Confidence 55677888755555555566666 554444331 000 0111111 144578887788777
Q ss_pred EEEECC------CcEEEEECCCCeeEEEec---------------ccCCceEEEEEcCCCCEEEEEeCC-----C--c--
Q 005096 244 CSCSDD------TTVKVWDFARCQEERSLT---------------GHGWDVKSVDWHPTKSLLVSGGKD-----S--L-- 293 (715)
Q Consensus 244 as~s~D------g~V~iwdl~~~~~~~~l~---------------~~~~~I~si~~spdg~~L~sgs~D-----g--~-- 293 (715)
++.-.+ ..|+.+|.. ++.+..+. ..+..+.+|++++|++.|+++.+. + .
T Consensus 100 is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~~ 178 (326)
T PF13449_consen 100 ISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRANP 178 (326)
T ss_pred EEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCccccc
Confidence 776666 778888865 44433331 134568899999999977766432 2 1
Q ss_pred -----EEEE--ECCC-CceeE----Eecc-----CCCceEEEEEcCCCCEEEE
Q 005096 294 -----VKLW--DAKS-GRELC----SFHG-----HKNMVLCVKWNQNGNWVLT 329 (715)
Q Consensus 294 -----I~iw--Dl~s-~~~~~----~~~~-----~~~~I~sl~~spdg~~Las 329 (715)
++|+ |..+ ++... .+.. ....|+.+.+.+++++|+.
T Consensus 179 ~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 179 DNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred ccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 4454 5544 22222 2222 3567889999999886664
|
|
| >KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.21 Score=51.57 Aligned_cols=10 Identities=50% Similarity=1.169 Sum_probs=6.2
Q ss_pred CCCCCCCCCC
Q 005096 580 PHISRPPPQM 589 (715)
Q Consensus 580 ~~~~~~~~~~ 589 (715)
|||+-++|.+
T Consensus 299 phl~gppPga 308 (498)
T KOG4849|consen 299 PHLMGPPPGA 308 (498)
T ss_pred cccCCCCCCC
Confidence 6776666554
|
|
| >PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast) | Back alignment and domain information |
|---|
Probab=95.03 E-value=2.8 Score=48.45 Aligned_cols=161 Identities=12% Similarity=0.132 Sum_probs=86.0
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceee--eec-CCCC------CeEEEEEecCCCEEEEEEC-C---CcE
Q 005096 186 DHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKA--NKS-AHKE------SVRDLSFCRTDLKFCSCSD-D---TTV 252 (715)
Q Consensus 186 ~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~--~~~-~h~~------~I~~l~~spd~~~Las~s~-D---g~V 252 (715)
++.|..|.|..+++.+++...+|.|.+||...+.... .+. .+.. -|..........++++.+. + -++
T Consensus 129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~y 208 (670)
T PF10395_consen 129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLSY 208 (670)
T ss_pred ccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEEE
Confidence 6788999999999999999999999999993332211 111 1111 1222221112344444443 2 246
Q ss_pred EEEEC-CCCeeEEEec---ccCCce--EEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccC-----C-CceEEEEE
Q 005096 253 KVWDF-ARCQEERSLT---GHGWDV--KSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGH-----K-NMVLCVKW 320 (715)
Q Consensus 253 ~iwdl-~~~~~~~~l~---~~~~~I--~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~-----~-~~I~sl~~ 320 (715)
+++.+ .+...+..+. .+.... ..+++. +|.+... .+++|.+|++-+-+...++.-. . ..+.++.-
T Consensus 209 kL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~-~G~LY~l--~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~~ 285 (670)
T PF10395_consen 209 KLISLSNESSSIFELSSTILENFGLEDSKFCYQ-FGKLYQL--SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLKP 285 (670)
T ss_pred EEEEeccCCcceEEeehheeccCCcccceEEEe-CCEEEEE--eCCEEEEEEcCCceEEEEEEechhhccccccceEeec
Confidence 67776 1112222221 122222 233333 4543333 6789999999776655544311 1 23444432
Q ss_pred cCCCCEEEEEECCCeEEEEECCCCeEEEEee
Q 005096 321 NQNGNWVLTASKDQIIKLYDIRAMKELESFR 351 (715)
Q Consensus 321 spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~ 351 (715)
+..++++.+. ++.|++.|+.-...+.++.
T Consensus 286 -~s~nRvLLs~-~nkIyLld~~~~siLse~~ 314 (670)
T PF10395_consen 286 -PSPNRVLLSV-NNKIYLLDLKFESILSEFE 314 (670)
T ss_pred -CCCCeEEEEc-CCEEEEEeehhhhhhhhhh
Confidence 2333444443 6789999997665555554
|
It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex []. |
| >PLN02193 nitrile-specifier protein | Back alignment and domain information |
|---|
Probab=95.01 E-value=3.8 Score=46.37 Aligned_cols=187 Identities=9% Similarity=-0.036 Sum_probs=88.0
Q ss_pred CCCEEEEEeCC-------CcEEEEeCCCCceeeeecC--CCC--CeEEEEEecCCCEEEEEECC-----CcEEEEECCCC
Q 005096 197 NDNWMVSGDDG-------GAIKYWQNNMNNVKANKSA--HKE--SVRDLSFCRTDLKFCSCSDD-----TTVKVWDFARC 260 (715)
Q Consensus 197 dg~~L~tgs~d-------g~I~iwd~~~~~~~~~~~~--h~~--~I~~l~~spd~~~Las~s~D-----g~V~iwdl~~~ 260 (715)
++.+++.|+.+ ..+.+||+++.+-...... ... ........-++++++.|+.+ +.+.+||+.+.
T Consensus 175 ~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~ 254 (470)
T PLN02193 175 GNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTN 254 (470)
T ss_pred CCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCC
Confidence 34555666643 2466778776543321110 011 11111122245566666654 45888998765
Q ss_pred eeEEEecc----cCCceEEEEEcCCCCEEEEEeCCC-----cEEEEECCCCceeEEec-----cCCCceEEEEEcCCCCE
Q 005096 261 QEERSLTG----HGWDVKSVDWHPTKSLLVSGGKDS-----LVKLWDAKSGRELCSFH-----GHKNMVLCVKWNQNGNW 326 (715)
Q Consensus 261 ~~~~~l~~----~~~~I~si~~spdg~~L~sgs~Dg-----~I~iwDl~s~~~~~~~~-----~~~~~I~sl~~spdg~~ 326 (715)
+-...-.. ....-.+++.. ++++++.|+.++ .+..||+.+.+-...-. ........+.+ ++++
T Consensus 255 ~W~~l~~~~~~P~~R~~h~~~~~-~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~--~gki 331 (470)
T PLN02193 255 EWKLLTPVEEGPTPRSFHSMAAD-EENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVV--QGKV 331 (470)
T ss_pred EEEEcCcCCCCCCCccceEEEEE-CCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEE--CCcE
Confidence 43221110 11111222222 456677776543 46778887654221100 01111112222 5667
Q ss_pred EEEEECC----CeEEEEECCCCeEEEEeec----CCCCeEEEEEccCCCCEEEEEeCC--------------CcEEEEEc
Q 005096 327 VLTASKD----QIIKLYDIRAMKELESFRG----HRKDVTALAWHPFHEEYFVSGSLD--------------GSIFHWLV 384 (715)
Q Consensus 327 Lasgs~d----g~I~iwDl~t~~~~~~~~~----h~~~V~~l~~sp~~~~~l~sgs~D--------------G~I~iwd~ 384 (715)
++.++.+ ..|.+||+.+.+-...-.. ......+++.. ++++++.|+.+ ..+.+||.
T Consensus 332 yviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~ 409 (470)
T PLN02193 332 WVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAV--GKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDT 409 (470)
T ss_pred EEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEEEE--CCEEEEECCccCCccccccCccceeccEEEEEc
Confidence 7776654 4689999987654322111 11112222222 66777777753 14677777
Q ss_pred CCCC
Q 005096 385 GHET 388 (715)
Q Consensus 385 ~~~~ 388 (715)
.+..
T Consensus 410 ~t~~ 413 (470)
T PLN02193 410 ETLQ 413 (470)
T ss_pred CcCE
Confidence 6553
|
|
| >PRK13979 DNA topoisomerase IV subunit A; Provisional | Back alignment and domain information |
|---|
Probab=94.93 E-value=13 Score=45.61 Aligned_cols=149 Identities=13% Similarity=0.026 Sum_probs=83.9
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEeCCCCceEE----E--EeccCCCEEEEEEcCCCCEEEEEeCCCcE---EEEeCCCCc-
Q 005096 150 VLWTPTGRRLITGSQSGEFTLWNGQSFNFEM----I--LQAHDHAIRSMVWSHNDNWMVSGDDGGAI---KYWQNNMNN- 219 (715)
Q Consensus 150 l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~----~--l~~h~~~V~~l~~spdg~~L~tgs~dg~I---~iwd~~~~~- 219 (715)
-.+-++...+++.+.+|.|+-.+.++.+... . +.. ++.+..+.-....++|+.-+..|.+ .+|++....
T Consensus 510 edlI~~E~v~v~lS~~GyIKr~~~~~~~~q~~g~~~~~~ke-~D~i~~~~~~~T~d~LL~FTn~Gkvy~ikvy~IPe~~~ 588 (957)
T PRK13979 510 EELIVVEDVVITLSNEGFIKRIPLKSYNRSNSNVEDIEYRE-GDFNKFLIQSNTKDTLLIFTDKGNMYQIKGINIPEFKW 588 (957)
T ss_pred hHcCCCcceEEEEecCCEEEEccccccccccccccccccCC-CCceEEEEEEcCCCEEEEEECCCeEEEEEeeeCCCCCc
Confidence 3456677889999999999988765432111 1 122 2444444444444555555556765 455554432
Q ss_pred -----eeeeec---C-CCCCeEEE-EEe--cCCCEEEEEECCCcEEEEECCCCe------eEEEecccCCceEEEEEcCC
Q 005096 220 -----VKANKS---A-HKESVRDL-SFC--RTDLKFCSCSDDTTVKVWDFARCQ------EERSLTGHGWDVKSVDWHPT 281 (715)
Q Consensus 220 -----~~~~~~---~-h~~~I~~l-~~s--pd~~~Las~s~Dg~V~iwdl~~~~------~~~~l~~~~~~I~si~~spd 281 (715)
.+..+. . ....|..+ .+. .++.+|+.++.+|.|+...++... ....+. ..+.+.++.+...
T Consensus 589 ~~~G~~I~nll~~~~~~~EkIv~i~~~~ef~~~~~lv~~Tk~G~VKrt~L~ef~~~r~~~~aikL~-e~DeLV~v~~~~~ 667 (957)
T PRK13979 589 KEKGERLDEIIKGIDLESEKIIEAYSIEDFTPQKDFIFITDSGGIKKTSLDKFVTNYTKLMALKLK-KGEKLIKVKLVDR 667 (957)
T ss_pred CCCCeEHHHhhhccCCCCCeEEEEEEeccCCCCCEEEEEECCCeEEEEehhhccccccceEEEEcC-CCCEEEEEEEcCC
Confidence 122221 1 23444443 332 244678999999999998874322 122233 2445555555543
Q ss_pred C---CEEEEEeCCCcEEEEECC
Q 005096 282 K---SLLVSGGKDSLVKLWDAK 300 (715)
Q Consensus 282 g---~~L~sgs~Dg~I~iwDl~ 300 (715)
+ ..++..+.+|.+..|+.+
T Consensus 668 ~~~~~~Iil~Tk~G~airF~~~ 689 (957)
T PRK13979 668 TREEKFIKIKTKKGLSFTVEEP 689 (957)
T ss_pred CCCCCEEEEEeCCCcEEEEEHH
Confidence 2 467888888888888764
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=94.86 E-value=0.56 Score=53.34 Aligned_cols=71 Identities=15% Similarity=0.268 Sum_probs=45.7
Q ss_pred CCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 005096 141 NKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQ 214 (715)
Q Consensus 141 ~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd 214 (715)
...+..+++|.-+|.+..++.++.||.|++|+.......++... ...-..+.|...| |++...|..+.-|.
T Consensus 11 ~k~~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~~-~~p~~nlv~tnhg--l~~~tsdrr~la~~ 81 (1636)
T KOG3616|consen 11 PKEDEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICEE-AKPKENLVFTNHG--LVTATSDRRALAWK 81 (1636)
T ss_pred ccccceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhhh-cCCccceeeeccc--eEEEeccchhheee
Confidence 34455678888889999999999999999999765444332221 1222344554333 55555666666664
|
|
| >KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=94.86 E-value=0.14 Score=58.28 Aligned_cols=6 Identities=67% Similarity=1.381 Sum_probs=3.3
Q ss_pred CCCCCC
Q 005096 651 GGFPNG 656 (715)
Q Consensus 651 ~~~~~~ 656 (715)
|||++|
T Consensus 589 ~g~~Gg 594 (1102)
T KOG1924|consen 589 GGFLGG 594 (1102)
T ss_pred CCCCCC
Confidence 555554
|
|
| >KOG2247 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.85 E-value=0.0045 Score=66.77 Aligned_cols=147 Identities=16% Similarity=0.188 Sum_probs=101.3
Q ss_pred EEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEE-EEEeCCCcEEEEECCCCceeEEecc
Q 005096 232 RDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLL-VSGGKDSLVKLWDAKSGRELCSFHG 310 (715)
Q Consensus 232 ~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L-~sgs~Dg~I~iwDl~s~~~~~~~~~ 310 (715)
....|.+++..++.++.+..|..||-.. +....+. ..+...+++|+-++..+ +.+-..+.+++||+++...-..-.+
T Consensus 38 i~~~w~~e~~nlavaca~tiv~~YD~ag-q~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~g 115 (615)
T KOG2247|consen 38 IIHRWRPEGHNLAVACANTIVIYYDKAG-QVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESG 115 (615)
T ss_pred ceeeEecCCCceehhhhhhHHHhhhhhc-ceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhcc
Confidence 3455667776788888888999999533 3333332 34456678888877644 4556678999999986432111111
Q ss_pred CCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEE
Q 005096 311 HKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHW 382 (715)
Q Consensus 311 ~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iw 382 (715)
.+..-.-+.|++....++.+...+.+.|++..+.+.+...-.|...+++++|.. +++.+.++.|..+.+-
T Consensus 116 g~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~l--Ed~vil~dcd~~L~v~ 185 (615)
T KOG2247|consen 116 GTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTL--EDYVILCDCDNTLSVT 185 (615)
T ss_pred CcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecc--cceeeecCcHHHHHHh
Confidence 122222378998888899999999999999988887777767999999999986 5566666666555443
|
|
| >KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.80 E-value=2.2 Score=52.08 Aligned_cols=136 Identities=13% Similarity=0.171 Sum_probs=86.3
Q ss_pred eCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcC--------CCCEEEEEeCCCcEEEEeCCCC----ce-----eeeec
Q 005096 163 SQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSH--------NDNWMVSGDDGGAIKYWQNNMN----NV-----KANKS 225 (715)
Q Consensus 163 s~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~sp--------dg~~L~tgs~dg~I~iwd~~~~----~~-----~~~~~ 225 (715)
+.|+.+.+|+.+++.....+.+.+..|..|.+-. .=++|++-..--.|.|+-+... .. ...+.
T Consensus 96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~ 175 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS 175 (1311)
T ss_pred EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee
Confidence 3467899999999888888888777777776532 2234444444455666533211 11 11222
Q ss_pred CCCCCeEEEEEecCCCEEEEEECCCcEEEEEC----CC------Cee--------------EEEec-ccCCceEEEEEcC
Q 005096 226 AHKESVRDLSFCRTDLKFCSCSDDTTVKVWDF----AR------CQE--------------ERSLT-GHGWDVKSVDWHP 280 (715)
Q Consensus 226 ~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl----~~------~~~--------------~~~l~-~~~~~I~si~~sp 280 (715)
.....|+|+....+|+.|++|- || .||.+ .+ +.. +..+. .+.+.|..|+++.
T Consensus 176 ~dg~~V~~I~~t~nGRIF~~G~-dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~ 252 (1311)
T KOG1900|consen 176 VDGVSVNCITYTENGRIFFAGR-DG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDN 252 (1311)
T ss_pred cCCceEEEEEeccCCcEEEeec-CC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecc
Confidence 3356788888777777666554 55 44443 11 111 01122 4567899999998
Q ss_pred CCCEEEEEeCCCcEEEEECCC
Q 005096 281 TKSLLVSGGKDSLVKLWDAKS 301 (715)
Q Consensus 281 dg~~L~sgs~Dg~I~iwDl~s 301 (715)
..+++.+-++.++|.+||+..
T Consensus 253 SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 253 SRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred ccceeeeeccCceEEEEEccC
Confidence 888999999999999999976
|
|
| >KOG2247 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.71 E-value=0.0066 Score=65.52 Aligned_cols=135 Identities=12% Similarity=0.217 Sum_probs=93.2
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEE-EEEeCCCcEEEEeCCCCceeeeecCC
Q 005096 149 RVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWM-VSGDDGGAIKYWQNNMNNVKANKSAH 227 (715)
Q Consensus 149 ~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L-~tgs~dg~I~iwd~~~~~~~~~~~~h 227 (715)
...|-+++.-|+.++.+..|..||-... ....+ ...+....++|..++..+ +.+-..+.+.|||+++......-.+.
T Consensus 39 ~~~w~~e~~nlavaca~tiv~~YD~agq-~~le~-n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~gg 116 (615)
T KOG2247|consen 39 IHRWRPEGHNLAVACANTIVIYYDKAGQ-VILEL-NPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESGG 116 (615)
T ss_pred eeeEecCCCceehhhhhhHHHhhhhhcc-eeccc-CCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhccC
Confidence 3456666666888888888888985432 22222 234556678888877655 45667799999998875332222222
Q ss_pred CCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEE
Q 005096 228 KESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLL 285 (715)
Q Consensus 228 ~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L 285 (715)
...-.-+.|++....++.+...+.+.|++..+.+.+...-.|...+++++|...+..+
T Consensus 117 ~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vi 174 (615)
T KOG2247|consen 117 TSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVI 174 (615)
T ss_pred cchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccceee
Confidence 2222337888888888999899999999988776666666688899999998876543
|
|
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=94.70 E-value=0.98 Score=52.57 Aligned_cols=113 Identities=8% Similarity=0.041 Sum_probs=74.4
Q ss_pred ceEEEEEcC--CCCEEEEEECCCeEEEEECCC-------C----e---------EEEEeecCCCCeEEEEEc--cCCCCE
Q 005096 314 MVLCVKWNQ--NGNWVLTASKDQIIKLYDIRA-------M----K---------ELESFRGHRKDVTALAWH--PFHEEY 369 (715)
Q Consensus 314 ~I~sl~~sp--dg~~Lasgs~dg~I~iwDl~t-------~----~---------~~~~~~~h~~~V~~l~~s--p~~~~~ 369 (715)
.|+.+.... +...|+++..||.|.+|.+++ . + ....+. ....+++|+++ . ..++
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~-~~rl 179 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYK-KSRL 179 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecC-cceE
Confidence 355555443 557889999999999997632 1 0 011111 33467888887 5 6778
Q ss_pred EEEEeCCCcEEEEEcCCCCceEEE--eeccCCCEEEEEEcCCC---C---EEEEEECCCeEEEEecC
Q 005096 370 FVSGSLDGSIFHWLVGHETPQVEI--HNVHDNTVWDLAWHPIG---Y---LLCSGSNDHTTKFWCRN 428 (715)
Q Consensus 370 l~sgs~DG~I~iwd~~~~~~~~~~--~~~h~~~V~~l~~spdg---~---~L~sgs~Dg~I~iWdl~ 428 (715)
||++++...|.||-+......... ...+...|-+|+|.++. . .|++++-.|.+.+|+++
T Consensus 180 IAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~ 246 (717)
T PF08728_consen 180 IAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIK 246 (717)
T ss_pred EEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEE
Confidence 888888888888866542111111 11255678899987653 2 78889999999999884
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.63 E-value=3.5 Score=50.78 Aligned_cols=35 Identities=14% Similarity=0.309 Sum_probs=28.7
Q ss_pred CCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q 005096 142 KNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSF 176 (715)
Q Consensus 142 ~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~ 176 (715)
+-......++|++...++|.++.+|.|+++-...-
T Consensus 33 G~~~~~~~~afD~~q~llai~t~tg~i~~yg~~~v 67 (993)
T KOG1983|consen 33 GFPSTPSALAFDPTQGLLAIGTRTGAIKIYGQPGV 67 (993)
T ss_pred CCCCCCcceeeccccceEEEEEecccEEEecccce
Confidence 33446778999999999999999999999976543
|
|
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=94.60 E-value=0.95 Score=52.20 Aligned_cols=112 Identities=14% Similarity=0.255 Sum_probs=72.2
Q ss_pred CceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEec-cCCCceEEEEEcC--CCCEEEEEECCCeEEEEECC-----
Q 005096 271 WDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFH-GHKNMVLCVKWNQ--NGNWVLTASKDQIIKLYDIR----- 342 (715)
Q Consensus 271 ~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~-~~~~~I~sl~~sp--dg~~Lasgs~dg~I~iwDl~----- 342 (715)
....-+.-+.-++..++-+....+.|||.+.+....+-. ...+.|.++.|.. |+..|++.+....|.+|.-.
T Consensus 30 ~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~ 109 (631)
T PF12234_consen 30 SNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYT 109 (631)
T ss_pred CCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhh
Confidence 344445555545555555555679999999876444322 3467899999965 88888888889999988531
Q ss_pred ----CCeEEEEe--ecCC-CCeEEEEEccCCCCEEEEEeCCCcEEEEEcC
Q 005096 343 ----AMKELESF--RGHR-KDVTALAWHPFHEEYFVSGSLDGSIFHWLVG 385 (715)
Q Consensus 343 ----t~~~~~~~--~~h~-~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~ 385 (715)
+...++++ ..+. ..|.+..|.. ++.+++.+ ++.+.|+|-.
T Consensus 110 ~~~p~w~~i~~i~i~~~T~h~Igds~Wl~-~G~LvV~s--GNqlfv~dk~ 156 (631)
T PF12234_consen 110 NKGPSWAPIRKIDISSHTPHPIGDSIWLK-DGTLVVGS--GNQLFVFDKW 156 (631)
T ss_pred cCCcccceeEEEEeecCCCCCccceeEec-CCeEEEEe--CCEEEEECCC
Confidence 12233333 2333 6789999997 56555544 3478887653
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=94.59 E-value=0.11 Score=38.40 Aligned_cols=35 Identities=14% Similarity=0.431 Sum_probs=30.5
Q ss_pred CCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEE
Q 005096 312 KNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKEL 347 (715)
Q Consensus 312 ~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~ 347 (715)
...|.+++|+|..++||.++.||.|.||.+ +++.+
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qri 45 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQRI 45 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcCc
Confidence 456999999999999999999999999998 55543
|
|
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=94.59 E-value=2 Score=42.55 Aligned_cols=138 Identities=7% Similarity=0.099 Sum_probs=78.5
Q ss_pred CEEEEEeCCCeEEEEeCCC--CceEEEEeccCCCEEEEEEcCCCCEEEEEeCC---C---cEEEE-eCCC----Cceee-
Q 005096 157 RRLITGSQSGEFTLWNGQS--FNFEMILQAHDHAIRSMVWSHNDNWMVSGDDG---G---AIKYW-QNNM----NNVKA- 222 (715)
Q Consensus 157 ~~Latgs~dg~I~Iwd~~~--~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~d---g---~I~iw-d~~~----~~~~~- 222 (715)
+.|+.+...++|.+|++.+ ......+.. -+.|..+.++..|+||+|--++ . .+++| |++. ...+.
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v 107 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV 107 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence 4566657778899999883 334444443 3789999999999999986432 2 56665 2211 11111
Q ss_pred eec---------------------CCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCee-E-----EEec----c--c
Q 005096 223 NKS---------------------AHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQE-E-----RSLT----G--H 269 (715)
Q Consensus 223 ~~~---------------------~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~-~-----~~l~----~--~ 269 (715)
.+- .......+++.++....|++|+. +++.||.+..... . ..|. . .
T Consensus 108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~-~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~~~ 186 (215)
T PF14761_consen 108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCG-NKLVLFTLKYQTIQSEKFSFLDFERSLIDHID 186 (215)
T ss_pred EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcC-CEEEEEEEEEEEEecccccEEechhhhhheec
Confidence 111 12345677888875555666654 4788887743322 1 1111 1 1
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 005096 270 GWDVKSVDWHPTKSLLVSGGKDSLVKLWDA 299 (715)
Q Consensus 270 ~~~I~si~~spdg~~L~sgs~Dg~I~iwDl 299 (715)
+-....+++. ++++|..++ ..++++.+
T Consensus 187 ~~~p~~v~ic--~~yiA~~s~-~ev~Vlkl 213 (215)
T PF14761_consen 187 NFKPTQVAIC--EGYIAVMSD-LEVLVLKL 213 (215)
T ss_pred CceEEEEEEE--eeEEEEecC-CEEEEEEE
Confidence 1224455665 566766654 55666654
|
|
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=94.58 E-value=0.87 Score=52.48 Aligned_cols=110 Identities=14% Similarity=0.235 Sum_probs=71.6
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeec-CCCCCeEEEEEe--cCCCEEEEEECCCcEEEEECC------
Q 005096 188 AIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKS-AHKESVRDLSFC--RTDLKFCSCSDDTTVKVWDFA------ 258 (715)
Q Consensus 188 ~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~-~h~~~I~~l~~s--pd~~~Las~s~Dg~V~iwdl~------ 258 (715)
...-+.-+.-++..++-+....+.|||...+.+..... ...+.|.++.|. +|+..+++.+..+.|.+|.-.
T Consensus 31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~ 110 (631)
T PF12234_consen 31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTN 110 (631)
T ss_pred CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhc
Confidence 34444444444554555555789999998876444332 457889999996 478888888889899988531
Q ss_pred ---CCeeEEEe--cccC-CceEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 005096 259 ---RCQEERSL--TGHG-WDVKSVDWHPTKSLLVSGGKDSLVKLWDA 299 (715)
Q Consensus 259 ---~~~~~~~l--~~~~-~~I~si~~spdg~~L~sgs~Dg~I~iwDl 299 (715)
+...++.+ ..+. ..|.+..|..+|.+++.++ +.+.|+|-
T Consensus 111 ~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk 155 (631)
T PF12234_consen 111 KGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDK 155 (631)
T ss_pred CCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECC
Confidence 11122222 2233 5789999998887655443 56888864
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=94.54 E-value=2.2 Score=42.17 Aligned_cols=140 Identities=15% Similarity=0.226 Sum_probs=83.1
Q ss_pred CEEEEEeCCCcEEEEECCC--CceeEEeccCCCceEEEEEcCCCCEEEEEECCC------eEEEE-ECCCC----eEEE-
Q 005096 283 SLLVSGGKDSLVKLWDAKS--GRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQ------IIKLY-DIRAM----KELE- 348 (715)
Q Consensus 283 ~~L~sgs~Dg~I~iwDl~s--~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg------~I~iw-Dl~t~----~~~~- 348 (715)
+.|+.+...+.|.+||+.. .+.+.+|. .-+.|..+.++..|+||++--.+. .+|+| +.+.. ..+.
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~-Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v 107 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFS-TVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV 107 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEc-chhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence 4454546678899999983 34455665 347899999999999999865332 55664 22211 1111
Q ss_pred Eeec---------------------CCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCc------eEEE----eecc
Q 005096 349 SFRG---------------------HRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETP------QVEI----HNVH 397 (715)
Q Consensus 349 ~~~~---------------------h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~------~~~~----~~~h 397 (715)
.+.+ -...+.+++..+..|++|+.+ ++.+.+|.+..... ...+ ...|
T Consensus 108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~--~~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~~ 185 (215)
T PF14761_consen 108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC--GNKLVLFTLKYQTIQSEKFSFLDFERSLIDHI 185 (215)
T ss_pred EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc--CCEEEEEEEEEEEEecccccEEechhhhhhee
Confidence 1111 234578889999788887754 55888887643322 0111 0111
Q ss_pred C-CCEEEEEEcCCCCEEEEEECCCeEEEEecC
Q 005096 398 D-NTVWDLAWHPIGYLLCSGSNDHTTKFWCRN 428 (715)
Q Consensus 398 ~-~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~ 428 (715)
. -....+++. +.++|..+ |..++++++.
T Consensus 186 ~~~~p~~v~ic--~~yiA~~s-~~ev~Vlkl~ 214 (215)
T PF14761_consen 186 DNFKPTQVAIC--EGYIAVMS-DLEVLVLKLE 214 (215)
T ss_pred cCceEEEEEEE--eeEEEEec-CCEEEEEEEe
Confidence 1 224566665 55676665 6678887763
|
|
| >PRK13979 DNA topoisomerase IV subunit A; Provisional | Back alignment and domain information |
|---|
Probab=94.53 E-value=16 Score=44.83 Aligned_cols=113 Identities=10% Similarity=-0.052 Sum_probs=64.4
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCeE---EEEeCCCCc------eEEEE----eccCCCEEE-EEEc--CCCCEEEEEeCCC
Q 005096 145 CSINRVLWTPTGRRLITGSQSGEF---TLWNGQSFN------FEMIL----QAHDHAIRS-MVWS--HNDNWMVSGDDGG 208 (715)
Q Consensus 145 ~~I~~l~~spdg~~Latgs~dg~I---~Iwd~~~~~------~~~~l----~~h~~~V~~-l~~s--pdg~~L~tgs~dg 208 (715)
+.|..+.......+|+.-+..|.+ ++|++...+ .+..+ ...+..|.+ +.+. .++.+|+.++.+|
T Consensus 552 D~i~~~~~~~T~d~LL~FTn~Gkvy~ikvy~IPe~~~~~~G~~I~nll~~~~~~~EkIv~i~~~~ef~~~~~lv~~Tk~G 631 (957)
T PRK13979 552 DFNKFLIQSNTKDTLLIFTDKGNMYQIKGINIPEFKWKEKGERLDEIIKGIDLESEKIIEAYSIEDFTPQKDFIFITDSG 631 (957)
T ss_pred CceEEEEEEcCCCEEEEEECCCeEEEEEeeeCCCCCcCCCCeEHHHhhhccCCCCCeEEEEEEeccCCCCCEEEEEECCC
Confidence 555566666666677777777765 455655432 11112 111334443 3442 2345788889999
Q ss_pred cEEEEeCCCCc------eeeeecCCCCCeEEEEEecCC---CEEEEEECCCcEEEEECC
Q 005096 209 AIKYWQNNMNN------VKANKSAHKESVRDLSFCRTD---LKFCSCSDDTTVKVWDFA 258 (715)
Q Consensus 209 ~I~iwd~~~~~------~~~~~~~h~~~I~~l~~spd~---~~Las~s~Dg~V~iwdl~ 258 (715)
.|+...++... ....+. ..+.+.++.+..++ ..++..+.+|.+..|+.+
T Consensus 632 ~VKrt~L~ef~~~r~~~~aikL~-e~DeLV~v~~~~~~~~~~~Iil~Tk~G~airF~~~ 689 (957)
T PRK13979 632 GIKKTSLDKFVTNYTKLMALKLK-KGEKLIKVKLVDRTREEKFIKIKTKKGLSFTVEEP 689 (957)
T ss_pred eEEEEehhhccccccceEEEEcC-CCCEEEEEEEcCCCCCCCEEEEEeCCCcEEEEEHH
Confidence 99988764321 111222 24455555555432 468888888888888764
|
|
| >KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.41 E-value=0.42 Score=57.93 Aligned_cols=145 Identities=14% Similarity=0.197 Sum_probs=92.1
Q ss_pred eCCCcEEEEECCCCceeEEeccCCCceEEEEEc--------CCCCEEEEEECCCeEEEEECCCCeE---------EEEee
Q 005096 289 GKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWN--------QNGNWVLTASKDQIIKLYDIRAMKE---------LESFR 351 (715)
Q Consensus 289 s~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~s--------pdg~~Lasgs~dg~I~iwDl~t~~~---------~~~~~ 351 (715)
+.|+.|.+|+.+++.....+.+....|..|.+- +.=+++++.+.--.|.|+-+...+. ..++.
T Consensus 96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~ 175 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS 175 (1311)
T ss_pred EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee
Confidence 457889999999988888888777777776542 3334555555555666664432111 12222
Q ss_pred cCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCC----------------------ceEEEeeccCCCEEEEEEcCC
Q 005096 352 GHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHET----------------------PQVEIHNVHDNTVWDLAWHPI 409 (715)
Q Consensus 352 ~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~----------------------~~~~~~~~h~~~V~~l~~spd 409 (715)
.....|+++.... +|++|++|- ||.|+-.-..... .+..+...+.++|..+.+...
T Consensus 176 ~dg~~V~~I~~t~-nGRIF~~G~-dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~S 253 (1311)
T KOG1900|consen 176 VDGVSVNCITYTE-NGRIFFAGR-DGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNS 253 (1311)
T ss_pred cCCceEEEEEecc-CCcEEEeec-CCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccc
Confidence 3456688888554 777777665 4444322111110 011122245778999999988
Q ss_pred CCEEEEEECCCeEEEEecCCCCCccc
Q 005096 410 GYLLCSGSNDHTTKFWCRNRPGDTAR 435 (715)
Q Consensus 410 g~~L~sgs~Dg~I~iWdl~~~~~~~~ 435 (715)
..+|.+-+..|+|.+|++...+....
T Consensus 254 R~IlY~lsek~~v~~Y~i~~~G~~~~ 279 (1311)
T KOG1900|consen 254 RNILYVLSEKGTVSAYDIGGNGLGGP 279 (1311)
T ss_pred cceeeeeccCceEEEEEccCCCccce
Confidence 99999999999999999988665433
|
|
| >KOG2377 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.39 E-value=1.5 Score=47.60 Aligned_cols=98 Identities=12% Similarity=0.232 Sum_probs=67.7
Q ss_pred cCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCcee----EEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCC-
Q 005096 269 HGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGREL----CSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRA- 343 (715)
Q Consensus 269 ~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~----~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t- 343 (715)
..+.|.+|.|++|++.|++--.|++|.+++....+.. .+.+.....|...+|+.+ .-+|..+..| |.+|....
T Consensus 65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pe 142 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPE 142 (657)
T ss_pred CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchh
Confidence 4568999999999999999999999999987432221 122334456899999866 4455555443 66665543
Q ss_pred CeEEEEeecCCCCeEEEEEccCCCCE
Q 005096 344 MKELESFRGHRKDVTALAWHPFHEEY 369 (715)
Q Consensus 344 ~~~~~~~~~h~~~V~~l~~sp~~~~~ 369 (715)
.+.++..+.++..|.-..|++ +.++
T Consensus 143 krslRlVks~~~nvnWy~yc~-et~v 167 (657)
T KOG2377|consen 143 KRSLRLVKSHNLNVNWYMYCP-ETAV 167 (657)
T ss_pred hhhhhhhhhcccCccEEEEcc-ccce
Confidence 344566677888888888888 4443
|
|
| >PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins | Back alignment and domain information |
|---|
Probab=94.23 E-value=0.89 Score=50.66 Aligned_cols=186 Identities=13% Similarity=0.097 Sum_probs=0.0
Q ss_pred CCCeEEEEEecCCCEEEEEECCCcEEEEEC-------CCCeeEEEe-cccCCceEEEEEcCCCCEEEEEeCCCcEEEE-E
Q 005096 228 KESVRDLSFCRTDLKFCSCSDDTTVKVWDF-------ARCQEERSL-TGHGWDVKSVDWHPTKSLLVSGGKDSLVKLW-D 298 (715)
Q Consensus 228 ~~~I~~l~~spd~~~Las~s~Dg~V~iwdl-------~~~~~~~~l-~~~~~~I~si~~spdg~~L~sgs~Dg~I~iw-D 298 (715)
.....+..+...+..+++. |..++||+. +++.....+ .+....+.+| +++....|.|+.| +
T Consensus 26 ~~~~~~gi~~e~g~Aw~~~--d~~l~vW~Y~~~~~s~~~~~~~~~~~~~~~~~i~~v--------~lv~p~~G~v~f~~~ 95 (422)
T PF08801_consen 26 QSPCSMGIFPEIGRAWIVV--DNRLYVWNYSSTQSSPNDGSDFPLFDDGSSSSIPGV--------GLVKPKTGRVVFWES 95 (422)
T ss_dssp TTS-EEEEE-TTSEEEEEE--TTEEEEEE--SS--GG--EEEEE-----------SE--------EEEE-TT-EEEEES-
T ss_pred ccceEEEEEcccCEEEEEE--CCEEEEEeccCCCCCcCcccccceecCCCCCCCceE--------EEEEcCCCCEEeccc
Q ss_pred CCCCceeEEec-----------cCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCC
Q 005096 299 AKSGRELCSFH-----------GHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHE 367 (715)
Q Consensus 299 l~s~~~~~~~~-----------~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~ 367 (715)
+.....+.+.. ..........-.-+..-++++..+|+|.....+....+.++......-.+-.+.....
T Consensus 96 I~~~l~~~t~~~i~l~gv~~~~l~~~e~~~~~~~~~~~~~I~~ts~GRif~~~~~~~~g~~~l~y~~~~~~~~~i~~~~~ 175 (422)
T PF08801_consen 96 ISHLLVLATPSQISLLGVSYSELLSGELSTSLTNVEPSGFIVSTSTGRIFFLGIRDSNGKYELSYQQLSGRCSKINHTSS 175 (422)
T ss_dssp TT-TT--EEEE------------------EEEEEEETTTEEEEETT--EEEEEE-TTS-EEEEE-TT-------------
T ss_pred chhhhhcCccccccccccceeeecCCceEEECCCCceEEEEEECCCCeEEEEeCCCCCCcEEEEEEcCcCCccccccccC
Q ss_pred CEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCCCCCcccccccc
Q 005096 368 EYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGDTARDKFNM 440 (715)
Q Consensus 368 ~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~~~~~~~~~~ 440 (715)
.++...... ....+..|..+++.+..++|++.+.+|.|.+|++...+.....+...
T Consensus 176 ~~~~~~~p~-----------------~~~~~~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~~~~~~~~~~~~ 231 (422)
T PF08801_consen 176 SIFSSLLPS-----------------FSDPRPKIVQVAVDPSRRLLYTLTSDGSIQVWDLGPGGSTLVSKVDI 231 (422)
T ss_dssp ---------------------------------EEEEEEETTTTEEEEEESSE-EEEEEE-SS-EEEEEEEEH
T ss_pred ceeccccCC-----------------cccchhceeeEEecCCcCEEEEEeCCCcEEEEEEeCCCCceeeehhH
|
RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A. |
| >smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2 | Back alignment and domain information |
|---|
Probab=94.22 E-value=8.8 Score=40.65 Aligned_cols=222 Identities=10% Similarity=0.011 Sum_probs=105.3
Q ss_pred CCCEEEEEeCCCcEEEEeCCC--CceeeeecCCCCCeEEEEEecCCCEEEEEEC-CCcEEEEECCCCee-----------
Q 005096 197 NDNWMVSGDDGGAIKYWQNNM--NNVKANKSAHKESVRDLSFCRTDLKFCSCSD-DTTVKVWDFARCQE----------- 262 (715)
Q Consensus 197 dg~~L~tgs~dg~I~iwd~~~--~~~~~~~~~h~~~I~~l~~spd~~~Las~s~-Dg~V~iwdl~~~~~----------- 262 (715)
++++|+.|+++|...+. ++. .+... ..+...|+.+......+.|++-+. ...|+++|+.....
T Consensus 12 ~~~~lL~GTe~Gly~~~-~~~~~~~~~k--l~~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~ 88 (302)
T smart00036 12 DGKWLLVGTEEGLYVLN-ISDQPGTLEK--LIGRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLV 88 (302)
T ss_pred CCcEEEEEeCCceEEEE-cccCCCCeEE--ecCcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCcccc
Confidence 33689999999866555 544 22332 235668999999987777666553 34499999843221
Q ss_pred -----EEEecccCCceEEEEEcCCC-CEEEEEeCCCcEEEEECCCC----ceeEEe---c-cCCCceEEEEEcC--CCCE
Q 005096 263 -----ERSLTGHGWDVKSVDWHPTK-SLLVSGGKDSLVKLWDAKSG----RELCSF---H-GHKNMVLCVKWNQ--NGNW 326 (715)
Q Consensus 263 -----~~~l~~~~~~I~si~~spdg-~~L~sgs~Dg~I~iwDl~s~----~~~~~~---~-~~~~~I~sl~~sp--dg~~ 326 (715)
...+ .+......+++.... ..++++.....|.++..... ..++.+ . .....+..+..+. +...
T Consensus 89 ~~~~~~~~~-~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (302)
T smart00036 89 IRKNVLTKI-PDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERPG 167 (302)
T ss_pred ccccceEeC-CcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccccceE
Confidence 1111 222222333333222 23344445566777644321 112110 0 1112233333333 2456
Q ss_pred EEEEECCCeEEEEECCC--CeEEE----E-eecCC-CCeEEEEEccCCCCEEEEEeCCCcEEEEEcCC-CCceEEEeecc
Q 005096 327 VLTASKDQIIKLYDIRA--MKELE----S-FRGHR-KDVTALAWHPFHEEYFVSGSLDGSIFHWLVGH-ETPQVEIHNVH 397 (715)
Q Consensus 327 Lasgs~dg~I~iwDl~t--~~~~~----~-~~~h~-~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~-~~~~~~~~~~h 397 (715)
|.+|+..+...++++.. ..... . ..... ..+..+.+. ++.+|++ -++ ...+.|... .......+ .-
T Consensus 168 lcvG~~~~~~~~~~~~~~~~~~~d~sl~~~~~~~~~~p~~i~~l~--~~e~Llc-~~~-~~v~Vn~~G~~~~r~~~l-~w 242 (302)
T smart00036 168 ICIGSDKGGGDVVQFHESLVSKEDLSLPFLSEETSLKPISVVQVP--RDEFLLC-YDE-FGVFVNLYGKRRSRNPIL-HW 242 (302)
T ss_pred EEEEEcCCCCeEEEEeecccccccccccccccccccCceEEEEEC--CCeEEEE-ECc-EEEEEeCCCCccccceEE-Ec
Confidence 77777653344455432 11000 0 01111 233333332 3444443 333 344444433 11111111 13
Q ss_pred CCCEEEEEEcCCCCEEEEEECCCeEEEEecCCC
Q 005096 398 DNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRP 430 (715)
Q Consensus 398 ~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~ 430 (715)
.....++++. ..+|+.-. +..|.||++...
T Consensus 243 ~~~p~~~~~~--~pyll~~~-~~~ievr~l~~~ 272 (302)
T smart00036 243 EFMPESFAYH--SPYLLAFH-DNGIEIRSIKTG 272 (302)
T ss_pred CCcccEEEEE--CCEEEEEc-CCcEEEEECCCC
Confidence 4456777776 35566555 556999999764
|
Unpublished observations. |
| >KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.21 E-value=18 Score=44.20 Aligned_cols=148 Identities=14% Similarity=0.141 Sum_probs=84.5
Q ss_pred CEEEEEeC---------CCcEEEEECCC-----Cc-----eeEEe--ccCCCceEEEEEcCCCCEEEEEECCCeEEEEEC
Q 005096 283 SLLVSGGK---------DSLVKLWDAKS-----GR-----ELCSF--HGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDI 341 (715)
Q Consensus 283 ~~L~sgs~---------Dg~I~iwDl~s-----~~-----~~~~~--~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl 341 (715)
.+|++|.. -|.+.|||+-. ++ .++.+ +..++.|..++=. +|. |+++ ..-+|.||++
T Consensus 1047 ~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgkP~t~~KlKel~~eE~KGtVsavceV-~G~-l~~~-~GqKI~v~~l 1123 (1366)
T KOG1896|consen 1047 PYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGKPFTKNKLKELYIEEQKGTVSAVCEV-RGH-LLSS-QGQKIIVRKL 1123 (1366)
T ss_pred ceEEEEEeecccccccCcccEEEEEEEEecCCCCCCcccceeeeeehhhcccceEEEEEe-ccE-EEEc-cCcEEEEEEe
Confidence 36777643 37899998632 21 22222 2345667666532 454 4444 3568999999
Q ss_pred CCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeecc--CCCEEEEEEcCCC--CEEEEEE
Q 005096 342 RAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVH--DNTVWDLAWHPIG--YLLCSGS 417 (715)
Q Consensus 342 ~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h--~~~V~~l~~spdg--~~L~sgs 417 (715)
.....+.-..--+-.+....... -+++|+.|.--..|.+..+..+.....+.... .-.+.++.|--|| -.++++.
T Consensus 1124 ~r~~~ligVaFiD~~~yv~s~~~-vknlIl~gDV~ksisfl~fqeep~rlsL~srd~~~l~v~s~EFLVdg~~L~flvsD 1202 (1366)
T KOG1896|consen 1124 DRDSELIGVAFIDLPLYVHSMKV-VKNLILAGDVMKSISFLGFQEEPYRLSLLSRDFEPLNVYSTEFLVDGSNLSFLVSD 1202 (1366)
T ss_pred ccCCcceeeEEeccceeEEehhh-hhhheehhhhhhceEEEEEccCceEEEEeecCCchhhceeeeeEEcCCeeEEEEEc
Confidence 43333222111222222222222 35677777766777777766655544444322 2357788887775 4678888
Q ss_pred CCCeEEEEecCCCCCcc
Q 005096 418 NDHTTKFWCRNRPGDTA 434 (715)
Q Consensus 418 ~Dg~I~iWdl~~~~~~~ 434 (715)
.|++|++|-...+..+.
T Consensus 1203 a~rNi~vy~Y~Pe~~eS 1219 (1366)
T KOG1896|consen 1203 ADRNIHVYMYAPENIES 1219 (1366)
T ss_pred CCCcEEEEEeCCCCccc
Confidence 99999999886554433
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 715 | ||||
| 2ymu_A | 577 | Structure Of A Highly Repetitive Propeller Structur | 3e-24 | ||
| 2ymu_A | 577 | Structure Of A Highly Repetitive Propeller Structur | 1e-13 | ||
| 1vyh_C | 410 | Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | 8e-24 | ||
| 1vyh_C | 410 | Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | 1e-12 | ||
| 2gnq_A | 336 | Structure Of Wdr5 Length = 336 | 3e-22 | ||
| 2xl2_A | 334 | Wdr5 In Complex With An Rbbp5 Peptide Recruited To | 4e-22 | ||
| 3emh_A | 318 | Structural Basis Of Wdr5-Mll Interaction Length = 3 | 7e-22 | ||
| 4a7j_A | 318 | Symmetric Dimethylation Of H3 Arginine 2 Is A Novel | 1e-21 | ||
| 2h13_A | 317 | Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length | 1e-21 | ||
| 3psl_A | 318 | Fine-Tuning The Stimulation Of Mll1 Methyltransfera | 1e-21 | ||
| 2h9l_A | 329 | Wdr5delta23 Length = 329 | 1e-21 | ||
| 2h9m_A | 313 | Wdr5 In Complex With Unmodified H3k4 Peptide Length | 2e-21 | ||
| 2g9a_A | 311 | Structural Basis For The Specific Recognition Of Me | 2e-21 | ||
| 3smr_A | 312 | Crystal Structure Of Human Wd Repeat Domain 5 With | 2e-21 | ||
| 2h68_A | 312 | Histone H3 Recognition And Presentation By The Wdr5 | 2e-21 | ||
| 2g99_A | 308 | Structural Basis For The Specific Recognition Of Me | 3e-21 | ||
| 2cnx_A | 315 | Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2. | 3e-21 | ||
| 2cnx_A | 315 | Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2. | 1e-12 | ||
| 3mxx_A | 315 | Crystal Structure Of Wdr5 Mutant (S62a) Length = 31 | 3e-21 | ||
| 2co0_A | 315 | Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs | 6e-21 | ||
| 2co0_A | 315 | Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs | 1e-12 | ||
| 3n0e_A | 315 | Crystal Structure Of Wdr5 Mutant (W330y) Length = 3 | 1e-20 | ||
| 3n0d_A | 315 | Crystal Structure Of Wdr5 Mutant (W330f) Length = 3 | 2e-20 | ||
| 2pbi_B | 354 | The Multifunctional Nature Of Gbeta5RGS9 REVEALED F | 5e-20 | ||
| 2pbi_B | 354 | The Multifunctional Nature Of Gbeta5RGS9 REVEALED F | 7e-09 | ||
| 1erj_A | 393 | Crystal Structure Of The C-Terminal Wd40 Domain Of | 2e-16 | ||
| 1erj_A | 393 | Crystal Structure Of The C-Terminal Wd40 Domain Of | 2e-11 | ||
| 3dm0_A | 694 | Maltose Binding Protein Fusion With Rack1 From A. T | 4e-16 | ||
| 3dm0_A | 694 | Maltose Binding Protein Fusion With Rack1 From A. T | 3e-10 | ||
| 3sn6_B | 351 | Crystal Structure Of The Beta2 Adrenergic Receptor- | 1e-15 | ||
| 3sn6_B | 351 | Crystal Structure Of The Beta2 Adrenergic Receptor- | 8e-05 | ||
| 1gg2_B | 340 | G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet | 1e-15 | ||
| 1gg2_B | 340 | G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet | 8e-05 | ||
| 2bcj_B | 340 | Crystal Structure Of G Protein-coupled Receptor Kin | 1e-15 | ||
| 2bcj_B | 340 | Crystal Structure Of G Protein-coupled Receptor Kin | 9e-05 | ||
| 1got_B | 340 | Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer | 1e-15 | ||
| 1got_B | 340 | Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer | 2e-04 | ||
| 1a0r_B | 340 | Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA- | 2e-15 | ||
| 1a0r_B | 340 | Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA- | 2e-04 | ||
| 2ovp_B | 445 | Structure Of The Skp1-Fbw7 Complex Length = 445 | 8e-15 | ||
| 2ovp_B | 445 | Structure Of The Skp1-Fbw7 Complex Length = 445 | 3e-11 | ||
| 3fm0_A | 345 | Crystal Structure Of Wd40 Protein Ciao1 Length = 34 | 1e-14 | ||
| 2yno_A | 310 | Yeast Betaprime Cop 1-304h6 Length = 310 | 2e-14 | ||
| 2yno_A | 310 | Yeast Betaprime Cop 1-304h6 Length = 310 | 4e-10 | ||
| 2yno_A | 310 | Yeast Betaprime Cop 1-304h6 Length = 310 | 7e-08 | ||
| 2ynn_A | 304 | Yeast Betaprime Cop 1-304 With Ktktn Motif Length = | 2e-14 | ||
| 2ynn_A | 304 | Yeast Betaprime Cop 1-304 With Ktktn Motif Length = | 4e-10 | ||
| 2ynn_A | 304 | Yeast Betaprime Cop 1-304 With Ktktn Motif Length = | 7e-08 | ||
| 3gfc_A | 425 | Crystal Structure Of Histone-Binding Protein Rbbp4 | 8e-14 | ||
| 2ynp_A | 604 | Yeast Betaprime Cop 1-604 With Ktktn Motif Length = | 1e-13 | ||
| 2ynp_A | 604 | Yeast Betaprime Cop 1-604 With Ktktn Motif Length = | 1e-09 | ||
| 2ynp_A | 604 | Yeast Betaprime Cop 1-604 With Ktktn Motif Length = | 2e-07 | ||
| 1p22_A | 435 | Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex | 2e-13 | ||
| 1p22_A | 435 | Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex | 2e-12 | ||
| 3c99_A | 432 | Structural Basis Of Histone H4 Recognition By P55 L | 2e-13 | ||
| 3c99_A | 432 | Structural Basis Of Histone H4 Recognition By P55 L | 1e-06 | ||
| 2xyi_A | 430 | Crystal Structure Of Nurf55 In Complex With A H4 Pe | 3e-13 | ||
| 2xyi_A | 430 | Crystal Structure Of Nurf55 In Complex With A H4 Pe | 2e-06 | ||
| 3mkq_A | 814 | Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco | 3e-13 | ||
| 3mkq_A | 814 | Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco | 2e-09 | ||
| 3mkq_A | 814 | Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco | 6e-07 | ||
| 2yba_A | 422 | Crystal Structure Of Nurf55 In Complex With Histone | 3e-13 | ||
| 2yba_A | 422 | Crystal Structure Of Nurf55 In Complex With Histone | 2e-06 | ||
| 4aow_A | 340 | Crystal Structure Of The Human Rack1 Protein At A R | 3e-12 | ||
| 4aow_A | 340 | Crystal Structure Of The Human Rack1 Protein At A R | 1e-09 | ||
| 4aow_A | 340 | Crystal Structure Of The Human Rack1 Protein At A R | 1e-05 | ||
| 2zkq_a | 317 | Structure Of A Mammalian Ribosomal 40s Subunit With | 3e-12 | ||
| 2zkq_a | 317 | Structure Of A Mammalian Ribosomal 40s Subunit With | 2e-09 | ||
| 2zkq_a | 317 | Structure Of A Mammalian Ribosomal 40s Subunit With | 2e-05 | ||
| 2hes_X | 330 | Cytosolic Iron-sulphur Assembly Protein- 1 Length = | 4e-12 | ||
| 2hes_X | 330 | Cytosolic Iron-sulphur Assembly Protein- 1 Length = | 7e-04 | ||
| 3zey_7 | 318 | High-resolution Cryo-electron Microscopy Structure | 9e-12 | ||
| 3zey_7 | 318 | High-resolution Cryo-electron Microscopy Structure | 2e-04 | ||
| 3rfg_A | 319 | Crystal Structure Of The Yeast Rack1 Dimer In Space | 9e-12 | ||
| 3rfh_A | 319 | Crystal Structure Of The Yeast Rack1 Dimer In Space | 1e-11 | ||
| 3izb_a | 319 | Localization Of The Small Subunit Ribosomal Protein | 1e-11 | ||
| 3jyv_R | 313 | Structure Of The 40s Rrna And Proteins And PE TRNA | 1e-11 | ||
| 1trj_A | 314 | Homology Model Of Yeast Rack1 Protein Fitted Into 1 | 1e-11 | ||
| 3iz6_a | 380 | Localization Of The Small Subunit Ribosomal Protein | 3e-11 | ||
| 3iz6_a | 380 | Localization Of The Small Subunit Ribosomal Protein | 1e-07 | ||
| 3ow8_A | 321 | Crystal Structure Of The Wd Repeat-Containing Prote | 5e-11 | ||
| 3frx_A | 319 | Crystal Structure Of The Yeast Orthologue Of Rack1, | 1e-10 | ||
| 3shf_A | 1256 | Crystal Structure Of The R265s Mutant Of Full-Lengt | 1e-10 | ||
| 3sfz_A | 1249 | Crystal Structure Of Full-Length Murine Apaf-1 Leng | 1e-10 | ||
| 4gqb_B | 344 | Crystal Structure Of The Human Prmt5:mep50 Complex | 5e-10 | ||
| 4gqb_B | 344 | Crystal Structure Of The Human Prmt5:mep50 Complex | 8e-09 | ||
| 4gqb_B | 344 | Crystal Structure Of The Human Prmt5:mep50 Complex | 2e-07 | ||
| 4ggd_A | 431 | Structural Analysis Of Human Cdc20 Supports Multisi | 5e-10 | ||
| 2pm9_A | 416 | Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT O | 1e-09 | ||
| 4gga_A | 420 | Structural Analysis Of Human Cdc20 Supports Multi-S | 1e-09 | ||
| 3iza_B | 1263 | Structure Of An Apoptosome-Procaspase-9 Card Comple | 3e-09 | ||
| 4ggc_A | 318 | Structural Analysis Of Human Cdc20 Supports Multi-S | 9e-09 | ||
| 2aq5_A | 402 | Crystal Structure Of Murine Coronin-1 Length = 402 | 2e-08 | ||
| 1nex_B | 464 | Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp | 2e-08 | ||
| 3mks_B | 464 | Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH | 2e-08 | ||
| 2b4e_A | 402 | Crystal Structure Of Murine Coronin-1: Monoclinic F | 2e-08 | ||
| 4aez_A | 401 | Crystal Structure Of Mitotic Checkpoint Complex Len | 3e-08 | ||
| 2xzm_R | 343 | Crystal Structure Of The Eukaryotic 40s Ribosomal S | 5e-07 | ||
| 4g56_B | 357 | Crystal Structure Of Full Length Prmt5/mep50 Comple | 1e-06 | ||
| 4g56_B | 357 | Crystal Structure Of Full Length Prmt5/mep50 Comple | 7e-06 | ||
| 3jrp_A | 379 | Sec13 With Nup145c (Aa109-179) Insertion Blade Leng | 7e-06 | ||
| 1r5m_A | 425 | Crystal Structure Of The C-Terminal Wd40 Domain Of | 1e-05 | ||
| 1pi6_A | 615 | Yeast Actin Interacting Protein 1 (Aip1), Orthorhom | 1e-05 | ||
| 1nr0_A | 611 | Two Seven-Bladed Beta-Propeller Domains Revealed By | 1e-05 | ||
| 1nr0_A | 611 | Two Seven-Bladed Beta-Propeller Domains Revealed By | 2e-05 | ||
| 2pm6_B | 297 | Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF | 1e-05 | ||
| 3jro_A | 753 | Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice | 2e-05 | ||
| 2pm9_B | 297 | Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT O | 2e-05 | ||
| 4i79_A | 399 | Crystal Structure Of Human Nup43 Length = 399 | 2e-05 | ||
| 1gxr_A | 337 | Wd40 Region Of Human Groucho/tle1 Length = 337 | 3e-05 | ||
| 3zwl_B | 369 | Structure Of Eukaryotic Translation Initiation Fact | 4e-05 | ||
| 1pgu_A | 615 | Yeast Actin Interacting Protein 1 (aip1), Se-met Pr | 6e-05 | ||
| 3cfs_B | 414 | Structural Basis Of The Interaction Of Rbap46RBAP48 | 7e-05 | ||
| 4a11_B | 408 | Structure Of The Hsddb1-Hscsa Complex Length = 408 | 1e-04 | ||
| 3cfv_B | 414 | Structural Basis Of The Interaction Of Rbap46RBAP48 | 1e-04 | ||
| 2pm7_B | 297 | Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF | 1e-04 | ||
| 3odt_A | 313 | Crystal Structure Of Wd40 Beta Propeller Domain Of | 2e-04 | ||
| 3vl1_A | 420 | Crystal Structure Of Yeast Rpn14 Length = 420 | 3e-04 | ||
| 3acp_A | 417 | Crystal Structure Of Yeast Rpn14, A Chaperone Of Th | 3e-04 |
| >pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577 | Back alignment and structure |
|
| >pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577 | Back alignment and structure |
|
| >pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | Back alignment and structure |
|
| >pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | Back alignment and structure |
|
| >pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336 | Back alignment and structure |
|
| >pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334 | Back alignment and structure |
|
| >pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318 | Back alignment and structure |
|
| >pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318 | Back alignment and structure |
|
| >pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317 | Back alignment and structure |
|
| >pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318 | Back alignment and structure |
|
| >pdb|2H9L|A Chain A, Wdr5delta23 Length = 329 | Back alignment and structure |
|
| >pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313 | Back alignment and structure |
|
| >pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311 | Back alignment and structure |
|
| >pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312 | Back alignment and structure |
|
| >pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312 | Back alignment and structure |
|
| >pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308 | Back alignment and structure |
|
| >pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315 | Back alignment and structure |
|
| >pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315 | Back alignment and structure |
|
| >pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315 | Back alignment and structure |
|
| >pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354 | Back alignment and structure |
|
| >pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354 | Back alignment and structure |
|
| >pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393 | Back alignment and structure |
|
| >pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393 | Back alignment and structure |
|
| >pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694 | Back alignment and structure |
|
| >pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694 | Back alignment and structure |
|
| >pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351 | Back alignment and structure |
|
| >pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351 | Back alignment and structure |
|
| >pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340 | Back alignment and structure |
|
| >pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340 | Back alignment and structure |
|
| >pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340 | Back alignment and structure |
|
| >pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340 | Back alignment and structure |
|
| >pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340 | Back alignment and structure |
|
| >pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340 | Back alignment and structure |
|
| >pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340 | Back alignment and structure |
|
| >pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340 | Back alignment and structure |
|
| >pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445 | Back alignment and structure |
|
| >pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445 | Back alignment and structure |
|
| >pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345 | Back alignment and structure |
|
| >pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310 | Back alignment and structure |
|
| >pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310 | Back alignment and structure |
|
| >pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310 | Back alignment and structure |
|
| >pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304 | Back alignment and structure |
|
| >pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304 | Back alignment and structure |
|
| >pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304 | Back alignment and structure |
|
| >pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425 | Back alignment and structure |
|
| >pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604 | Back alignment and structure |
|
| >pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604 | Back alignment and structure |
|
| >pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604 | Back alignment and structure |
|
| >pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435 | Back alignment and structure |
|
| >pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435 | Back alignment and structure |
|
| >pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432 | Back alignment and structure |
|
| >pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432 | Back alignment and structure |
|
| >pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430 | Back alignment and structure |
|
| >pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430 | Back alignment and structure |
|
| >pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814 | Back alignment and structure |
|
| >pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814 | Back alignment and structure |
|
| >pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814 | Back alignment and structure |
|
| >pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422 | Back alignment and structure |
|
| >pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422 | Back alignment and structure |
|
| >pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340 | Back alignment and structure |
|
| >pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340 | Back alignment and structure |
|
| >pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340 | Back alignment and structure |
|
| >pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317 | Back alignment and structure |
|
| >pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317 | Back alignment and structure |
|
| >pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317 | Back alignment and structure |
|
| >pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330 | Back alignment and structure |
|
| >pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330 | Back alignment and structure |
|
| >pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318 | Back alignment and structure |
|
| >pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318 | Back alignment and structure |
|
| >pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319 | Back alignment and structure |
|
| >pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319 | Back alignment and structure |
|
| >pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319 | Back alignment and structure |
|
| >pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313 | Back alignment and structure |
|
| >pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314 | Back alignment and structure |
|
| >pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380 | Back alignment and structure |
|
| >pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380 | Back alignment and structure |
|
| >pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321 | Back alignment and structure |
|
| >pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319 | Back alignment and structure |
|
| >pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256 | Back alignment and structure |
|
| >pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249 | Back alignment and structure |
|
| >pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex Length = 344 | Back alignment and structure |
|
| >pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex Length = 344 | Back alignment and structure |
|
| >pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex Length = 344 | Back alignment and structure |
|
| >pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431 | Back alignment and structure |
|
| >pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE Copii Vesicular Coat Length = 416 | Back alignment and structure |
|
| >pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420 | Back alignment and structure |
|
| >pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318 | Back alignment and structure |
|
| >pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1 Length = 402 | Back alignment and structure |
|
| >pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464 | Back alignment and structure |
|
| >pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464 | Back alignment and structure |
|
| >pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form Length = 402 | Back alignment and structure |
|
| >pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex Length = 401 | Back alignment and structure |
|
| >pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343 | Back alignment and structure |
|
| >pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes From Xenopus Laevis Length = 357 | Back alignment and structure |
|
| >pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes From Xenopus Laevis Length = 357 | Back alignment and structure |
|
| >pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade Length = 379 | Back alignment and structure |
|
| >pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2 Length = 425 | Back alignment and structure |
|
| >pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic Crystal Form Length = 615 | Back alignment and structure |
|
| >pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The Structure Of A C. Elegans Homologue Of Yeast Actin Interacting Protein 1 (Aip1). Length = 611 | Back alignment and structure |
|
| >pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The Structure Of A C. Elegans Homologue Of Yeast Actin Interacting Protein 1 (Aip1). Length = 611 | Back alignment and structure |
|
| >pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE Copii Vesicular Coat, Native Version Length = 297 | Back alignment and structure |
|
| >pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice Length = 753 | Back alignment and structure |
|
| >pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE Copii Vesicular Coat Length = 297 | Back alignment and structure |
|
| >pdb|4I79|A Chain A, Crystal Structure Of Human Nup43 Length = 399 | Back alignment and structure |
|
| >pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1 Length = 337 | Back alignment and structure |
|
| >pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor Eif3i Complex With Eif3b C-Terminus (655-700) Length = 369 | Back alignment and structure |
|
| >pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein, Monoclinic Crystal Form Length = 615 | Back alignment and structure |
|
| >pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414 | Back alignment and structure |
|
| >pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex Length = 408 | Back alignment and structure |
|
| >pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414 | Back alignment and structure |
|
| >pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE Copii Vesicular Coat, Selenomethionine Version Length = 297 | Back alignment and structure |
|
| >pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1 Length = 313 | Back alignment and structure |
|
| >pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14 Length = 420 | Back alignment and structure |
|
| >pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s Reg Particle Of The Proteasome Length = 417 | Back alignment and structure |
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 715 | |||
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 100.0 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 100.0 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 100.0 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 100.0 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 100.0 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 100.0 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 100.0 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 100.0 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 100.0 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 100.0 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 100.0 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 100.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 100.0 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 100.0 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 100.0 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 100.0 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 100.0 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 100.0 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 100.0 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 100.0 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 100.0 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 100.0 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 100.0 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 100.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 100.0 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 100.0 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 100.0 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 100.0 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 100.0 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 100.0 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 100.0 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 100.0 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 100.0 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 100.0 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 100.0 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 100.0 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 100.0 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 100.0 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 100.0 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 100.0 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 100.0 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 100.0 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 100.0 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 100.0 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 100.0 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 100.0 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 100.0 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 100.0 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 100.0 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 100.0 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 100.0 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 100.0 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 100.0 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 100.0 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 100.0 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 100.0 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 100.0 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 100.0 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.98 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.97 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.97 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.97 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.97 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.97 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.97 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.97 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.97 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.97 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.96 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.96 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.96 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.95 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.95 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.95 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.95 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.95 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.94 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.94 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.94 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.94 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.94 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.94 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.93 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.93 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.92 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.92 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.92 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.92 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.91 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.91 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.91 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.9 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.9 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.9 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.89 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.89 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.89 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.89 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.89 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.89 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.89 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.89 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.88 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.88 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.87 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.87 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.86 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.84 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.83 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.83 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.83 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.82 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.81 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.81 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.81 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.8 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.8 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.8 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.78 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.77 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.77 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.77 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.77 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.77 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.77 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.75 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.75 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.75 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.75 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.73 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.73 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.73 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.73 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.73 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.72 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.72 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.71 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.69 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.69 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.69 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.69 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.67 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.66 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.65 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.65 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.64 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.63 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.62 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.61 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.57 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.57 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.56 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.55 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.54 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.53 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.52 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.51 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.51 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.51 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.51 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.5 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 99.49 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.48 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 99.48 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.47 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 99.44 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.43 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 99.43 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.42 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.41 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 99.4 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 99.4 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 99.37 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 99.36 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 99.35 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 99.34 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 99.29 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 99.28 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 99.26 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 99.25 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 99.24 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 99.24 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 99.23 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 99.23 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 99.13 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 99.12 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 99.12 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 99.08 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 99.08 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 99.07 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 99.07 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 99.07 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 99.07 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 99.07 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 99.05 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 99.04 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 99.03 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 99.03 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 99.01 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 99.01 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 99.0 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.97 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.96 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 98.94 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 98.91 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 98.91 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 98.91 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 98.89 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 98.88 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.87 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.84 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.82 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 98.82 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 98.81 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 98.81 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 98.79 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 98.79 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 98.78 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 98.76 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 98.75 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 98.71 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 98.71 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 98.69 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 98.68 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 98.66 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 98.64 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 98.64 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 98.62 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 98.59 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 98.58 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 98.54 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 98.5 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 98.49 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 98.44 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 98.43 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 98.42 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 98.4 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 98.36 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 98.34 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 98.31 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 98.3 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 98.29 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 98.24 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 98.23 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 98.23 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 98.21 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 98.2 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 98.17 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 98.16 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 98.16 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 98.15 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 98.15 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 98.13 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 98.11 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 98.11 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 98.08 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 98.07 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 98.06 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 98.05 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 98.03 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 98.02 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 97.97 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 97.94 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 97.93 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 97.91 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 97.9 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 97.89 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 97.88 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 97.86 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 97.82 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 97.79 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 97.77 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 97.69 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 97.68 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 97.68 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 97.64 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 97.58 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 97.53 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 97.49 | |
| 3kci_A | 389 | Probable E3 ubiquitin-protein ligase HERC2; WD40, | 97.48 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 97.47 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 97.44 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 97.39 | |
| 3b7f_A | 394 | Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop | 97.35 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 97.25 | |
| 3qhy_B | 282 | Beta-lactamase inhibitory protein II; enyzme-inhib | 97.24 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 97.24 | |
| 3qhy_B | 282 | Beta-lactamase inhibitory protein II; enyzme-inhib | 97.18 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 97.17 | |
| 1suu_A | 312 | DNA gyrase subunit A; topoisomerase,DNA gyrase, be | 97.12 | |
| 1suu_A | 312 | DNA gyrase subunit A; topoisomerase,DNA gyrase, be | 97.11 | |
| 3uc1_A | 327 | DNA gyrase subunit A; DNA binding protein, topoiso | 97.1 | |
| 3sbq_A | 638 | Nitrous-oxide reductase; beta-propeller, cupredoxi | 97.09 | |
| 2wg3_C | 463 | Hedgehog-interacting protein; lipoprotein, develop | 96.96 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 96.96 | |
| 3b7f_A | 394 | Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop | 96.96 | |
| 1zi0_A | 307 | DNA gyrase subunit A; beta pinwheel, topoisomerase | 96.96 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 96.91 | |
| 3uc1_A | 327 | DNA gyrase subunit A; DNA binding protein, topoiso | 96.9 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 96.73 | |
| 1wp5_A | 323 | Topoisomerase IV; broken beta-propeller, hairpin-i | 96.73 | |
| 3l6v_A | 370 | GYRA, DNA gyrase subunit A; gyrase A C-terminal do | 96.69 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 96.68 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 96.66 | |
| 3no0_A | 276 | DNA gyrase subunit A; DNA topology, topoisomerase, | 96.61 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 96.6 | |
| 3no0_A | 276 | DNA gyrase subunit A; DNA topology, topoisomerase, | 96.57 | |
| 2wg3_C | 463 | Hedgehog-interacting protein; lipoprotein, develop | 96.56 | |
| 4hvt_A | 711 | Ritya.17583.B, post-proline cleaving enzyme; ssgci | 96.47 | |
| 3l6v_A | 370 | GYRA, DNA gyrase subunit A; gyrase A C-terminal do | 96.44 | |
| 3mvd_K | 423 | Regulator of chromosome condensation; protein-DNA | 96.39 | |
| 3iot_A | 449 | Maltose-binding protein, huntingtin fusion protei; | 96.36 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 96.36 | |
| 1wp5_A | 323 | Topoisomerase IV; broken beta-propeller, hairpin-i | 96.28 | |
| 1zi0_A | 307 | DNA gyrase subunit A; beta pinwheel, topoisomerase | 96.23 | |
| 3sbq_A | 638 | Nitrous-oxide reductase; beta-propeller, cupredoxi | 96.1 | |
| 3kci_A | 389 | Probable E3 ubiquitin-protein ligase HERC2; WD40, | 96.07 | |
| 4hvt_A | 711 | Ritya.17583.B, post-proline cleaving enzyme; ssgci | 96.01 | |
| 3mvd_K | 423 | Regulator of chromosome condensation; protein-DNA | 95.78 | |
| 4d9s_A | 406 | UVB-resistance protein UVR8; UV resistance, UV-B p | 95.67 | |
| 4d9s_A | 406 | UVB-resistance protein UVR8; UV resistance, UV-B p | 94.37 | |
| 1sqj_A | 789 | OXG-RCBH, oligoxyloglucan reducing-END-specific ce | 94.36 | |
| 3q6k_A | 381 | 43.2 kDa salivary protein; beta propeller, binding | 94.13 | |
| 2cn3_A | 737 | Xyloglucanase, beta-1,4-xyloglucan hydrolase; glyc | 94.01 | |
| 3of7_A | 473 | Regulator of chromosome condensation; beta-propell | 93.77 | |
| 3q6k_A | 381 | 43.2 kDa salivary protein; beta propeller, binding | 93.39 | |
| 4gq2_M | 950 | Nucleoporin NUP120; beta propeller alpha helical, | 93.2 | |
| 1a12_A | 413 | RCC1, regulator of chromosome condensation 1; guan | 92.98 | |
| 4gq2_M | 950 | Nucleoporin NUP120; beta propeller alpha helical, | 92.93 | |
| 1sqj_A | 789 | OXG-RCBH, oligoxyloglucan reducing-END-specific ce | 92.07 | |
| 1a12_A | 413 | RCC1, regulator of chromosome condensation 1; guan | 91.42 | |
| 1zvt_A | 256 | Topoisomerase IV subunit A; beta-pinwheel, ATPase, | 90.65 | |
| 1zvt_A | 256 | Topoisomerase IV subunit A; beta-pinwheel, ATPase, | 89.28 | |
| 2zux_A | 591 | YESW protein; beta-propeller, lyase, rhamnose comp | 88.24 | |
| 2cn3_A | 737 | Xyloglucanase, beta-1,4-xyloglucan hydrolase; glyc | 87.17 | |
| 3of7_A | 473 | Regulator of chromosome condensation; beta-propell | 86.57 |
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-45 Score=401.42 Aligned_cols=287 Identities=23% Similarity=0.423 Sum_probs=274.1
Q ss_pred ecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 005096 139 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN 218 (715)
Q Consensus 139 ~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~ 218 (715)
.+.+|.+.|++++|++++++|++|+.||+|+|||+.+++....+.+|...|.+++|++++++|++|+.|++|+|||+.+.
T Consensus 103 ~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~ 182 (410)
T 1vyh_C 103 ALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGF 182 (410)
T ss_dssp EEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSS
T ss_pred eecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Confidence 56799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005096 219 NVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWD 298 (715)
Q Consensus 219 ~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwD 298 (715)
+.+..+..|...|.+++|++++++|++++.|++|++||++++..+..+.+|...|.+++|++++++|++++.|+.|++||
T Consensus 183 ~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd 262 (410)
T 1vyh_C 183 ECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWV 262 (410)
T ss_dssp CEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred ceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeEEeccCCCceEEEEEcCC--------------------CCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeE
Q 005096 299 AKSGRELCSFHGHKNMVLCVKWNQN--------------------GNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVT 358 (715)
Q Consensus 299 l~s~~~~~~~~~~~~~I~sl~~spd--------------------g~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~ 358 (715)
+++++++..+..|...|.+++|+++ +.+|++|+.|+.|+|||+++++++..+.+|...|+
T Consensus 263 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~ 342 (410)
T 1vyh_C 263 VATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVR 342 (410)
T ss_dssp TTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEE
T ss_pred CCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEE
Confidence 9999999999999999999999986 67899999999999999999999999999999999
Q ss_pred EEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEec
Q 005096 359 ALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCR 427 (715)
Q Consensus 359 ~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl 427 (715)
+++|++ ++.+|++++.||.|+|||+.+..... .+..|...|++++|++++.+|++++.||+|+||++
T Consensus 343 ~v~~~~-~g~~l~s~s~D~~i~vwd~~~~~~~~-~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 343 GVLFHS-GGKFILSCADDKTLRVWDYKNKRCMK-TLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp EEEECS-SSSCEEEEETTTEEEEECCTTSCCCE-EEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred EEEEcC-CCCEEEEEeCCCeEEEEECCCCceEE-EEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence 999999 88999999999999999998776554 44579999999999999999999999999999986
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-44 Score=381.61 Aligned_cols=290 Identities=22% Similarity=0.348 Sum_probs=270.1
Q ss_pred EEEecCCCCccEEEEEEcCC----CCEEEEEeCCCeEEEEeCCCCce--EEEEeccCCCEEEEEEcCCCCEEEEEeCCCc
Q 005096 136 VHTSLNKNRCSINRVLWTPT----GRRLITGSQSGEFTLWNGQSFNF--EMILQAHDHAIRSMVWSHNDNWMVSGDDGGA 209 (715)
Q Consensus 136 ~~~~l~~H~~~I~~l~~spd----g~~Latgs~dg~I~Iwd~~~~~~--~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~ 209 (715)
+...+.+|.+.|++|+|+++ +++|++|+.|++|+|||+.+.+. ...+.+|...|.+++|++++.+|++++.|+.
T Consensus 24 ~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~ 103 (321)
T 3ow8_A 24 LFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAH 103 (321)
T ss_dssp EEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSE
T ss_pred eeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCc
Confidence 34578899999999999975 67899999999999999877654 4568899999999999999999999999999
Q ss_pred EEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEe
Q 005096 210 IKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGG 289 (715)
Q Consensus 210 I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs 289 (715)
|+|||+.+++.+..+..+...+.+++|++++++|++++.|+.|++||+++++....+..+...|.+++|++++++|++++
T Consensus 104 i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~ 183 (321)
T 3ow8_A 104 IRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGA 183 (321)
T ss_dssp EEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEE
T ss_pred EEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEc
Confidence 99999999999988888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCE
Q 005096 290 KDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEY 369 (715)
Q Consensus 290 ~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~ 369 (715)
.|+.|+|||+++++.+..+.+|...|++++|++++++|++++.|+.|+|||+++++.+..+.+|...|.+++|++ ++.+
T Consensus 184 ~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp-~~~~ 262 (321)
T 3ow8_A 184 IDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCP-DDTH 262 (321)
T ss_dssp TTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSE
T ss_pred CCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECC-CCCE
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999 8899
Q ss_pred EEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEec
Q 005096 370 FVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCR 427 (715)
Q Consensus 370 l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl 427 (715)
|++++.|++|+|||+++...+.. +..|...|++++|++++.+|++++.||+|+|||.
T Consensus 263 l~s~s~D~~v~iwd~~~~~~~~~-~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 263 FVSSSSDKSVKVWDVGTRTCVHT-FFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDC 319 (321)
T ss_dssp EEEEETTSCEEEEETTTTEEEEE-ECCCSSCEEEEEECTTSSEEEEEETTCCEEEEEC
T ss_pred EEEEeCCCcEEEEeCCCCEEEEE-EcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence 99999999999999988765544 4569999999999999999999999999999996
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-43 Score=378.85 Aligned_cols=288 Identities=24% Similarity=0.379 Sum_probs=267.2
Q ss_pred EEEecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005096 136 VHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQN 215 (715)
Q Consensus 136 ~~~~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~ 215 (715)
....+.+|.+.|++++|++|+++|++|+.||+|+|||+.+++.+..+..|...|.+++|++++++|++++.|+.|++|++
T Consensus 47 ~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~ 126 (340)
T 1got_B 47 TRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNL 126 (340)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEET
T ss_pred hheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEEC
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC----ceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCC
Q 005096 216 NMN----NVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKD 291 (715)
Q Consensus 216 ~~~----~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~D 291 (715)
.+. .....+..|...|.++.|++++ .|++++.|++|++||+++++.+..+.+|...|.+++|++++++|++++.|
T Consensus 127 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d 205 (340)
T 1got_B 127 KTREGNVRVSRELAGHTGYLSCCRFLDDN-QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACD 205 (340)
T ss_dssp TTCSBSCEEEEEEECCSSCEEEEEEEETT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred ccCCCcceeEEEecCCCccEEEEEECCCC-cEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCC
Confidence 875 3456677899999999999876 48999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeec--CCCCeEEEEEccCCCCE
Q 005096 292 SLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRG--HRKDVTALAWHPFHEEY 369 (715)
Q Consensus 292 g~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~--h~~~V~~l~~sp~~~~~ 369 (715)
+.|++||+++++.+..+.+|...|++++|++++++|++++.|+.|+|||+++++.+..+.. +...|++++|++ ++.+
T Consensus 206 ~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~ 284 (340)
T 1got_B 206 ASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSK-SGRL 284 (340)
T ss_dssp SCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECT-TSSE
T ss_pred CcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECC-CCCE
Confidence 9999999999999999999999999999999999999999999999999999988877753 335799999999 8999
Q ss_pred EEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEe
Q 005096 370 FVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWC 426 (715)
Q Consensus 370 l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWd 426 (715)
|++|+.||.|++||+.+.... ..+.+|.+.|++++|++++.+|++++.|++|+|||
T Consensus 285 l~~g~~d~~i~vwd~~~~~~~-~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 285 LLAGYDDFNCNVWDALKADRA-GVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EEEEETTSEEEEEETTTCCEE-EEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEEECCCCeEEEEEcccCcEe-eEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 999999999999999876654 45567999999999999999999999999999996
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-42 Score=374.29 Aligned_cols=289 Identities=25% Similarity=0.407 Sum_probs=266.4
Q ss_pred EEEecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005096 136 VHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQN 215 (715)
Q Consensus 136 ~~~~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~ 215 (715)
....+.+|.+.|++++|++++++|++|+.||+|+|||..+++....+..|...|.+++|++++++|++++.|+.|++|++
T Consensus 56 ~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~ 135 (354)
T 2pbi_B 56 TRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPL 135 (354)
T ss_dssp EEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEEC
T ss_pred EEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEE
Confidence 34578899999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCC------ceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcC--CCCEEEE
Q 005096 216 NMN------NVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHP--TKSLLVS 287 (715)
Q Consensus 216 ~~~------~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~sp--dg~~L~s 287 (715)
... .....+..|...|.+++|++++..|++++.|++|++||+++++.+..+.+|...|.+++|++ ++++|++
T Consensus 136 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~s 215 (354)
T 2pbi_B 136 TFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVS 215 (354)
T ss_dssp CCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEE
T ss_pred eccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEE
Confidence 643 23455668999999999999999999999999999999999999999999999999999987 4689999
Q ss_pred EeCCCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecC--CCCeEEEEEccC
Q 005096 288 GGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGH--RKDVTALAWHPF 365 (715)
Q Consensus 288 gs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h--~~~V~~l~~sp~ 365 (715)
++.|+.|++||+++++++..+..|...|++++|++++++|++++.|++|+|||+++.+.+..+..+ ...+.+++|++
T Consensus 216 gs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~- 294 (354)
T 2pbi_B 216 GGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSL- 294 (354)
T ss_dssp EETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECT-
T ss_pred EeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeC-
Confidence 999999999999999999999999999999999999999999999999999999999888777644 34789999999
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEe
Q 005096 366 HEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWC 426 (715)
Q Consensus 366 ~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWd 426 (715)
++.+|++++.|+.|+|||+.+.... ..+.+|.+.|++++|++|+.+|++++.|++|+||+
T Consensus 295 ~g~~l~~g~~d~~i~vwd~~~~~~~-~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 295 SGRLLFAGYNDYTINVWDVLKGSRV-SILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp TSSEEEEEETTSCEEEEETTTCSEE-EEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred CCCEEEEEECCCcEEEEECCCCceE-EEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 8999999999999999999877654 44557999999999999999999999999999995
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-42 Score=365.42 Aligned_cols=290 Identities=25% Similarity=0.401 Sum_probs=262.0
Q ss_pred EEecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 005096 137 HTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNN 216 (715)
Q Consensus 137 ~~~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~ 216 (715)
..++.+|.+.|++++|+|++++|++++.||+|+|||+++++.+..+..|...|.+++|++++++|++|+.|+.|+|||++
T Consensus 6 ~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~ 85 (304)
T 2ynn_A 6 KKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYN 85 (304)
T ss_dssp EEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETT
T ss_pred EEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECC
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCC-eeEEEecccCCceEEEEEcC-CCCEEEEEeCCCcE
Q 005096 217 MNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARC-QEERSLTGHGWDVKSVDWHP-TKSLLVSGGKDSLV 294 (715)
Q Consensus 217 ~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~-~~~~~l~~~~~~I~si~~sp-dg~~L~sgs~Dg~I 294 (715)
+++.+..+..|...|.+++|++++++|++++.|++|++||+++. .....+.+|...|.+++|+| ++.+|++++.|++|
T Consensus 86 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v 165 (304)
T 2ynn_A 86 TGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTV 165 (304)
T ss_dssp TCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEE
T ss_pred CCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeE
Confidence 99999999999999999999999999999999999999999876 55677889999999999998 67899999999999
Q ss_pred EEEECCCCceeEEec-cCCCceEEEEEcC--CCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEE
Q 005096 295 KLWDAKSGRELCSFH-GHKNMVLCVKWNQ--NGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFV 371 (715)
Q Consensus 295 ~iwDl~s~~~~~~~~-~~~~~I~sl~~sp--dg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~ 371 (715)
+|||+++.+....+. .+...+..++|++ ++.+|++++.|+.|+|||+++++++..+.+|...|.+++|++ ++.+|+
T Consensus 166 ~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p-~~~~l~ 244 (304)
T 2ynn_A 166 KVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHP-TLPIII 244 (304)
T ss_dssp EEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECS-SSSEEE
T ss_pred EEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECC-CCCEEE
Confidence 999999877666554 4567899999987 778999999999999999999999999999999999999999 788999
Q ss_pred EEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCC--EEEEEECCCeEEEEecCC
Q 005096 372 SGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGY--LLCSGSNDHTTKFWCRNR 429 (715)
Q Consensus 372 sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~--~L~sgs~Dg~I~iWdl~~ 429 (715)
+++.||+|+|||+++.+... .+..|...+++++|++++. +|++++ |..+.+|++..
T Consensus 245 s~s~Dg~i~iWd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~asg~-~~g~~~~~~~~ 302 (304)
T 2ynn_A 245 SGSEDGTLKIWNSSTYKVEK-TLNVGLERSWCIATHPTGRKNYIASGF-DNGFTVLSLGN 302 (304)
T ss_dssp EEETTSCEEEEETTTCCEEE-EECCSSSSEEEEEECTTCGGGCEEEEE-TTEEEEEECC-
T ss_pred EEcCCCeEEEEECCCCceee-eccCCCccEEEEEECCCCCceEEEEec-CCceEEEEecc
Confidence 99999999999998876554 4456888999999999874 567666 55577887754
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-42 Score=360.00 Aligned_cols=292 Identities=26% Similarity=0.448 Sum_probs=268.8
Q ss_pred EEEecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005096 136 VHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQN 215 (715)
Q Consensus 136 ~~~~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~ 215 (715)
+...+.+|...|++++|++++++|++++.||.|+|||+.+++....+..|...|.+++|++++++|++++.|+.|+|||+
T Consensus 15 ~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~ 94 (312)
T 4ery_A 15 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV 94 (312)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred eEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEEC
Confidence 45578899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEE
Q 005096 216 NMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVK 295 (715)
Q Consensus 216 ~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~ 295 (715)
++++.+..+..|...|.+++|++++++|++++.|++|++||+++++.+..+..|...|.+++|++++++|++++.|+.|+
T Consensus 95 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~ 174 (312)
T 4ery_A 95 SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 174 (312)
T ss_dssp TTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred CCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEECCCCceeEEec-cCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEE--EEEccCCCCEEEE
Q 005096 296 LWDAKSGRELCSFH-GHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTA--LAWHPFHEEYFVS 372 (715)
Q Consensus 296 iwDl~s~~~~~~~~-~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~--l~~sp~~~~~l~s 372 (715)
+||+++++.+..+. .+...+.+++|++++++|++++.|+.|++||+++++.+..+..|...+.+ ..++..++.+|++
T Consensus 175 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s 254 (312)
T 4ery_A 175 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 254 (312)
T ss_dssp EEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEE
T ss_pred EEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEE
Confidence 99999998887764 45667999999999999999999999999999999999999988765433 3455547899999
Q ss_pred EeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEE--CCCeEEEEecC
Q 005096 373 GSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGS--NDHTTKFWCRN 428 (715)
Q Consensus 373 gs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs--~Dg~I~iWdl~ 428 (715)
++.||.|++||+.+.... ..+.+|...|.+++|++++.+|++++ .|++|++|+.+
T Consensus 255 g~~dg~i~vwd~~~~~~~-~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 255 GSEDNLVYIWNLQTKEIV-QKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp CCTTSCEEEEETTTCCEE-EEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred ECCCCEEEEEECCCchhh-hhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 999999999999876654 45567999999999999999999997 69999999875
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-42 Score=399.89 Aligned_cols=363 Identities=18% Similarity=0.338 Sum_probs=287.8
Q ss_pred CCCcccchhhhhcccccccceEeeehhhheeeEEEEEeccCCCccccccCchhhhcCccceeecCCCCCceee-------
Q 005096 61 YDAHGDSFAAKRMRKLTQRRAVDYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSFAA------- 133 (715)
Q Consensus 61 ~~~h~~~~~~~r~~~~~~~~~~~~~~~~~~~~~irvW~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~------- 133 (715)
+.+|.+.+....+. ....++++...+.+||+|+....+.... .....+...+..++|+.+.......
T Consensus 55 ~~~h~~~v~~~~~s-----pdg~~lasg~~d~~v~lWd~~~~~~~~~-~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~ 128 (611)
T 1nr0_A 55 YTEHSHQTTVAKTS-----PSGYYCASGDVHGNVRIWDTTQTTHILK-TTIPVFSGPVKDISWDSESKRIAAVGEGRERF 128 (611)
T ss_dssp ECCCSSCEEEEEEC-----TTSSEEEEEETTSEEEEEESSSTTCCEE-EEEECSSSCEEEEEECTTSCEEEEEECCSSCS
T ss_pred ecCCCCceEEEEEC-----CCCcEEEEEeCCCCEEEeECCCCcceee-EeecccCCceEEEEECCCCCEEEEEECCCCce
Confidence 45555555443332 2345677777889999999864332211 1111122334445555443322111
Q ss_pred -eE-------EEEecCCCCccEEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEE
Q 005096 134 -KF-------VHTSLNKNRCSINRVLWTPTGR-RLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSG 204 (715)
Q Consensus 134 -~~-------~~~~l~~H~~~I~~l~~spdg~-~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tg 204 (715)
.+ ....+.+|...|++++|+|++. +|++|+.|++|+|||..+++....+.+|...|++++|++|+++|+++
T Consensus 129 ~~v~~wd~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~ 208 (611)
T 1nr0_A 129 GHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFAST 208 (611)
T ss_dssp EEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred eEEEEeeCCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEE
Confidence 00 1235789999999999999987 69999999999999999999999999999999999999999999999
Q ss_pred eCCCcEEEEeCCCCceeeeec-------CCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEE-------------
Q 005096 205 DDGGAIKYWQNNMNNVKANKS-------AHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEER------------- 264 (715)
Q Consensus 205 s~dg~I~iwd~~~~~~~~~~~-------~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~------------- 264 (715)
+.|++|+|||+.+++....+. .|...|.+++|++++++|++++.|++|+|||+++++.+.
T Consensus 209 s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~ 288 (611)
T 1nr0_A 209 GGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQL 288 (611)
T ss_dssp ETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEE
T ss_pred ECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeE
Confidence 999999999999988877763 799999999999999999999999999999998776543
Q ss_pred ------------------------------EecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEe-c----
Q 005096 265 ------------------------------SLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSF-H---- 309 (715)
Q Consensus 265 ------------------------------~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~-~---- 309 (715)
.+.+|...|++++|++++++|++++.|+.|++||+++++....+ .
T Consensus 289 ~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~ 368 (611)
T 1nr0_A 289 GIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHAT 368 (611)
T ss_dssp EEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSS
T ss_pred EEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcc
Confidence 33468889999999999999999999999999999876443221 0
Q ss_pred -----------------------------------------------------------------------------cCC
Q 005096 310 -----------------------------------------------------------------------------GHK 312 (715)
Q Consensus 310 -----------------------------------------------------------------------------~~~ 312 (715)
.+.
T Consensus 369 ~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~ 448 (611)
T 1nr0_A 369 MITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPIS 448 (611)
T ss_dssp CEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECS
T ss_pred eEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecC
Confidence 012
Q ss_pred CceEEEEEcCCCCEEEEEECCCeEEEEECCCCeE--EEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCce
Q 005096 313 NMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKE--LESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQ 390 (715)
Q Consensus 313 ~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~--~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~ 390 (715)
..+.+++|++|+++|++|+.|+.|+|||+++++. +.. ..|...|++|+|+| ++++|++++.|++|++||+.+....
T Consensus 449 ~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fsp-dg~~las~s~d~~v~~w~~~~~~~~ 526 (611)
T 1nr0_A 449 YNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSN-NGAFLVATDQSRKVIPYSVANNFEL 526 (611)
T ss_dssp SCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEEEECT-TSSEEEEEETTSCEEEEEGGGTTEE
T ss_pred CCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeec-cCCCCceEEEEECC-CCCEEEEEcCCCCEEEEEcCCCCce
Confidence 3467899999999999999999999999987654 333 67999999999999 8999999999999999999763332
Q ss_pred EE--EeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCCCC
Q 005096 391 VE--IHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPG 431 (715)
Q Consensus 391 ~~--~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~ 431 (715)
.. ....|...|++++|++|+++|++++.|++|+||+++...
T Consensus 527 ~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~ 569 (611)
T 1nr0_A 527 AHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPS 569 (611)
T ss_dssp SCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTT
T ss_pred eeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCcc
Confidence 22 233499999999999999999999999999999997654
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-43 Score=381.37 Aligned_cols=294 Identities=22% Similarity=0.393 Sum_probs=265.8
Q ss_pred EEEecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005096 136 VHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQN 215 (715)
Q Consensus 136 ~~~~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~ 215 (715)
+...+.+|.+.|++++|++++++|++|+.||+|+|||+.+++....+..|...|.+++|++++++|++|+.|+.|+|||+
T Consensus 58 ~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~ 137 (380)
T 3iz6_a 58 CCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNL 137 (380)
T ss_dssp EEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEEC
T ss_pred EeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEEC
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCc-------eeeeecCCCCCeEEEEEecCC-CEEEEEECCCcEEEEECCCCeeEEEe-----cccCCceEEEEEcC-C
Q 005096 216 NMNN-------VKANKSAHKESVRDLSFCRTD-LKFCSCSDDTTVKVWDFARCQEERSL-----TGHGWDVKSVDWHP-T 281 (715)
Q Consensus 216 ~~~~-------~~~~~~~h~~~I~~l~~spd~-~~Las~s~Dg~V~iwdl~~~~~~~~l-----~~~~~~I~si~~sp-d 281 (715)
.+.. ....+.+|...|.++.|++++ ..|++++.|++|++||+++++.+..+ .+|...|.+++|++ +
T Consensus 138 ~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 217 (380)
T 3iz6_a 138 SSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLN 217 (380)
T ss_dssp CCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSS
T ss_pred CCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCC
Confidence 7532 345567899999999999864 57999999999999999999888777 57889999999987 7
Q ss_pred CCEEEEEeCCCcEEEEECC-CCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCC-----
Q 005096 282 KSLLVSGGKDSLVKLWDAK-SGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRK----- 355 (715)
Q Consensus 282 g~~L~sgs~Dg~I~iwDl~-s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~----- 355 (715)
+++|++|+.|++|++||++ .++.+..+.+|...|++++|++++++|++++.|++|+|||+++++.+..+..+..
T Consensus 218 ~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~ 297 (380)
T 3iz6_a 218 ANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNE 297 (380)
T ss_dssp CCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCS
T ss_pred CCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccc
Confidence 8899999999999999998 4577888999999999999999999999999999999999999999888765432
Q ss_pred --CeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEe---eccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCCC
Q 005096 356 --DVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIH---NVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRP 430 (715)
Q Consensus 356 --~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~---~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~ 430 (715)
.|++++|++ ++.+|++|+.||.|++||+........+. ..|.+.|++++|++|+.+|++|+.|++|+||++...
T Consensus 298 ~~~v~~~~~s~-~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~ 376 (380)
T 3iz6_a 298 LPIVTSVAFSI-SGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGH 376 (380)
T ss_dssp SCSCSEEEECS-SSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSS
T ss_pred cCceEEEEECC-CCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCC
Confidence 489999999 89999999999999999998776655442 568999999999999999999999999999998643
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-42 Score=369.08 Aligned_cols=295 Identities=22% Similarity=0.443 Sum_probs=254.6
Q ss_pred EEecCCCCc-cEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEE---EEeccCCCEEEEEEcCCCCEEEEEeCCCcEEE
Q 005096 137 HTSLNKNRC-SINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEM---ILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKY 212 (715)
Q Consensus 137 ~~~l~~H~~-~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~---~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~i 212 (715)
...+.+|.. .|.+++|+|+|++||+|+.|++|+|||+++.+... ...+|...|.+++|++++++|++++.|+.|+|
T Consensus 8 ~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~i 87 (345)
T 3fm0_A 8 LGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCI 87 (345)
T ss_dssp EEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred eeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEE
Confidence 456788988 99999999999999999999999999998876432 23679999999999999999999999999999
Q ss_pred EeCCCCc--eeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCC---eeEEEecccCCceEEEEEcCCCCEEEE
Q 005096 213 WQNNMNN--VKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARC---QEERSLTGHGWDVKSVDWHPTKSLLVS 287 (715)
Q Consensus 213 wd~~~~~--~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~---~~~~~l~~~~~~I~si~~spdg~~L~s 287 (715)
||++.+. .+..+.+|...|.+++|++++++|++++.|++|++||+++. ..+..+..|...|.+++|++++++|++
T Consensus 88 w~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s 167 (345)
T 3fm0_A 88 WKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLAS 167 (345)
T ss_dssp EEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEE
T ss_pred EEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEE
Confidence 9988764 56778899999999999999999999999999999999765 345677889999999999999999999
Q ss_pred EeCCCcEEEEECCCCc--eeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCC---------------CeEEEEe
Q 005096 288 GGKDSLVKLWDAKSGR--ELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRA---------------MKELESF 350 (715)
Q Consensus 288 gs~Dg~I~iwDl~s~~--~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t---------------~~~~~~~ 350 (715)
++.|+.|++||+++++ ++..+.+|...|++++|++++++|++++.|++|+|||+.. .+++..+
T Consensus 168 ~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (345)
T 3fm0_A 168 ASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTL 247 (345)
T ss_dssp EETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEE
T ss_pred EeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEe
Confidence 9999999999998775 4567889999999999999999999999999999999632 2344455
Q ss_pred ec-CCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCc--------eEEEeeccCCCEEEEEEcCCC-CEEEEEECCC
Q 005096 351 RG-HRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETP--------QVEIHNVHDNTVWDLAWHPIG-YLLCSGSNDH 420 (715)
Q Consensus 351 ~~-h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~--------~~~~~~~h~~~V~~l~~spdg-~~L~sgs~Dg 420 (715)
.+ |...|.+++|++ ++.+|++++.|+.|++|+.+.... ......+|...|++++|++++ .+|++++.||
T Consensus 248 ~~~h~~~v~~v~~~~-~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg 326 (345)
T 3fm0_A 248 SGFHSRTIYDIAWCQ-LTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDG 326 (345)
T ss_dssp CSSCSSCEEEEEECT-TTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTS
T ss_pred cCCCCCcEEEEEEec-CCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCC
Confidence 54 888999999999 788899999999999999875431 122335789999999999997 5999999999
Q ss_pred eEEEEecCCCCC
Q 005096 421 TTKFWCRNRPGD 432 (715)
Q Consensus 421 ~I~iWdl~~~~~ 432 (715)
+|+||++.....
T Consensus 327 ~v~~W~~~~~~~ 338 (345)
T 3fm0_A 327 EVAFWKYQRPEG 338 (345)
T ss_dssp CEEEEEECC---
T ss_pred cEEEEEecCCCC
Confidence 999999976443
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-41 Score=361.20 Aligned_cols=291 Identities=19% Similarity=0.312 Sum_probs=261.0
Q ss_pred EEEEecCCCCccEEEEEEcCCC-CEEEEEeCCCeEEEEeCCC-----CceEEEEeccCCCEEEEEEcCCCCEEEEEeCCC
Q 005096 135 FVHTSLNKNRCSINRVLWTPTG-RRLITGSQSGEFTLWNGQS-----FNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGG 208 (715)
Q Consensus 135 ~~~~~l~~H~~~I~~l~~spdg-~~Latgs~dg~I~Iwd~~~-----~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg 208 (715)
.+..+|.+|.+.|++++|++++ ++|++|+.|++|+|||+.+ +..+..+.+|...|.+++|++++++|++++.|+
T Consensus 8 ~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~ 87 (319)
T 3frx_A 8 VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDK 87 (319)
T ss_dssp EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred EEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCC
Confidence 3456789999999999999965 8999999999999999764 234677899999999999999999999999999
Q ss_pred cEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCC------C
Q 005096 209 AIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPT------K 282 (715)
Q Consensus 209 ~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spd------g 282 (715)
+|+|||+.+++....+..|...|.+++|++++.+|++++.|++|++||++. ..+..+.+|...|.+++|+++ +
T Consensus 88 ~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~~~ 166 (319)
T 3frx_A 88 TLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG-QCLATLLGHNDWVSQVRVVPNEKADDDS 166 (319)
T ss_dssp EEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTS-CEEEEECCCSSCEEEEEECCC------C
T ss_pred EEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC-CeEEEEeccCCcEEEEEEccCCCCCCCc
Confidence 999999999999999999999999999999999999999999999999964 577788899999999999985 4
Q ss_pred CEEEEEeCCCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEE
Q 005096 283 SLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAW 362 (715)
Q Consensus 283 ~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~ 362 (715)
.+|++++.|+.|++||+++.+....+.+|...|.+++|++++++|++++.|+.|+|||+++++.+..+.. ...|.+++|
T Consensus 167 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~ 245 (319)
T 3frx_A 167 VTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA-QDEVFSLAF 245 (319)
T ss_dssp CEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEEC-CSCEEEEEE
T ss_pred cEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecC-CCcEEEEEE
Confidence 4899999999999999999999999999999999999999999999999999999999999999988875 468999999
Q ss_pred ccCCCCEEEEEeCCCcEEEEEcCCCCceEEEe-------eccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCC
Q 005096 363 HPFHEEYFVSGSLDGSIFHWLVGHETPQVEIH-------NVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNR 429 (715)
Q Consensus 363 sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~-------~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~ 429 (715)
++ ++.+|++++.+ .|++|+++.......+. ..|...|.+++|++||++|++++.||.|+||++.+
T Consensus 246 sp-~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t 317 (319)
T 3frx_A 246 SP-NRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMT 317 (319)
T ss_dssp CS-SSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEE
T ss_pred cC-CCCEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEee
Confidence 99 78888888755 59999997655443332 23566799999999999999999999999999854
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-42 Score=370.42 Aligned_cols=285 Identities=20% Similarity=0.292 Sum_probs=243.0
Q ss_pred CCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCC-----------CCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcE
Q 005096 142 KNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQ-----------SFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAI 210 (715)
Q Consensus 142 ~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~-----------~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I 210 (715)
.|...|.+++|++||++|++++ |+++++||.. ..........++..|.+++|+++ +.|++|+.||+|
T Consensus 28 ~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d-~~l~~~s~dg~v 105 (344)
T 4gqb_B 28 CMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGE-RGILVASDSGAV 105 (344)
T ss_dssp SCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETT-TEEEEEETTSEE
T ss_pred cccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCC-CeEEEEECCCEE
Confidence 4667799999999999998887 6677777622 11122233346778999999988 578899999999
Q ss_pred EEEeCCCCceeee----ecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCC-EE
Q 005096 211 KYWQNNMNNVKAN----KSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKS-LL 285 (715)
Q Consensus 211 ~iwd~~~~~~~~~----~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~-~L 285 (715)
+|||+++++.... +.+|...|++|+|++++++|++++.|++|+|||+++++.+..+.+|...|++++|++++. +|
T Consensus 106 ~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l 185 (344)
T 4gqb_B 106 ELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVF 185 (344)
T ss_dssp EEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEE
T ss_pred EEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCce
Confidence 9999998765433 457999999999999999999999999999999999999999999999999999999885 78
Q ss_pred EEEeCCCcEEEEECCCCceeEEec--cCCCceEEEEEcC-CCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEE
Q 005096 286 VSGGKDSLVKLWDAKSGRELCSFH--GHKNMVLCVKWNQ-NGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAW 362 (715)
Q Consensus 286 ~sgs~Dg~I~iwDl~s~~~~~~~~--~~~~~I~sl~~sp-dg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~ 362 (715)
++++.|++|+|||+++++.+..+. .+...+++++|++ ++++|++|+.|+.|+|||+++++.+.++.+|...|++++|
T Consensus 186 ~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~f 265 (344)
T 4gqb_B 186 LSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVF 265 (344)
T ss_dssp EEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEE
T ss_pred eeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEE
Confidence 999999999999999999888764 3556799999998 5678899999999999999999999999999999999999
Q ss_pred ccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCC-EEEEEECCCeEEEEecCCC
Q 005096 363 HPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGY-LLCSGSNDHTTKFWCRNRP 430 (715)
Q Consensus 363 sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~-~L~sgs~Dg~I~iWdl~~~ 430 (715)
++++..+|++++.|++|+|||++++.. ....+|.+.|++++|++++. +|++++.|++|++|++..+
T Consensus 266 sp~g~~~lasgs~D~~i~vwd~~~~~~--~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~ 332 (344)
T 4gqb_B 266 SPHSVPFLASLSEDCSLAVLDSSLSEL--FRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTE 332 (344)
T ss_dssp CSSSSCCEEEEETTSCEEEECTTCCEE--EEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC-
T ss_pred ccCCCeEEEEEeCCCeEEEEECCCCcE--EEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCC
Confidence 996668999999999999999987653 33467999999999999975 6789999999999999754
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-42 Score=372.63 Aligned_cols=290 Identities=19% Similarity=0.287 Sum_probs=244.9
Q ss_pred CCCCccEEEEEEcCCCCEEEEEeC------CCeEEEEeCCCCc----eEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcE
Q 005096 141 NKNRCSINRVLWTPTGRRLITGSQ------SGEFTLWNGQSFN----FEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAI 210 (715)
Q Consensus 141 ~~H~~~I~~l~~spdg~~Latgs~------dg~I~Iwd~~~~~----~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I 210 (715)
..|...|++|+|||||++||+++. |+.|++|+..++. .......|...|.+++|+++++ +++++.||+|
T Consensus 39 ~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~v 117 (357)
T 4g56_B 39 ACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKG-ILVASDSGAV 117 (357)
T ss_dssp -CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTE-EEEEETTSCE
T ss_pred ccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCC-EEEEECCCEE
Confidence 469999999999999999999997 7889999987654 3344567889999999999875 5567889999
Q ss_pred EEEeCCCCceee----eecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCC-EE
Q 005096 211 KYWQNNMNNVKA----NKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKS-LL 285 (715)
Q Consensus 211 ~iwd~~~~~~~~----~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~-~L 285 (715)
+|||+.+++... ....|...|.+++|++++++|++++.|++|++||+++++.+..+..|...|++++|++++. +|
T Consensus 118 ~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~ 197 (357)
T 4g56_B 118 ELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIF 197 (357)
T ss_dssp EEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCE
T ss_pred EEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCcee
Confidence 999998875433 3347899999999999999999999999999999999999999999999999999999875 78
Q ss_pred EEEeCCCcEEEEECCCCceeEEe--ccCCCceEEEEEcCC-CCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEE
Q 005096 286 VSGGKDSLVKLWDAKSGRELCSF--HGHKNMVLCVKWNQN-GNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAW 362 (715)
Q Consensus 286 ~sgs~Dg~I~iwDl~s~~~~~~~--~~~~~~I~sl~~spd-g~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~ 362 (715)
++++.|+.|+|||+++++.+..+ ..+...+++++|+++ +.+|++|+.|+.|+|||+++++.+..+..|...|++++|
T Consensus 198 ~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~ 277 (357)
T 4g56_B 198 LSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAY 277 (357)
T ss_dssp EEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEE
T ss_pred eeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEE
Confidence 99999999999999998876654 346678999999996 568999999999999999999999999999999999999
Q ss_pred ccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcC-CCCEEEEEECCCeEEEEecCCCCCc
Q 005096 363 HPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHP-IGYLLCSGSNDHTTKFWCRNRPGDT 433 (715)
Q Consensus 363 sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~L~sgs~Dg~I~iWdl~~~~~~ 433 (715)
++++..+|++++.|++|+|||+++++.. .. ..|.+.|++|+|+| |+.+|++++.||+|++|++...++.
T Consensus 278 sp~~~~~lasgs~D~~i~iwd~~~~~~~-~~-~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~~~ 347 (357)
T 4g56_B 278 SYHSSPFLASISEDCTVAVLDADFSEVF-RD-LSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEGRT 347 (357)
T ss_dssp CSSSSCCEEEEETTSCEEEECTTSCEEE-EE-CCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC-----
T ss_pred cCCCCCEEEEEeCCCEEEEEECCCCcEe-EE-CCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcc
Confidence 9966789999999999999999876543 33 36999999999998 7999999999999999999765544
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-41 Score=360.06 Aligned_cols=289 Identities=20% Similarity=0.356 Sum_probs=242.8
Q ss_pred EEecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC--ceEEEE-ec-cCCCEEEEEEcCCCCEEEEEeCCCcEEE
Q 005096 137 HTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSF--NFEMIL-QA-HDHAIRSMVWSHNDNWMVSGDDGGAIKY 212 (715)
Q Consensus 137 ~~~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~--~~~~~l-~~-h~~~V~~l~~spdg~~L~tgs~dg~I~i 212 (715)
...+.+|.+.|++++|+++ +||+|+.|++|+|||+.+. +....+ .. |...|.+++|++++++|++++.|++|+|
T Consensus 7 ~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~i 84 (330)
T 2hes_X 7 IKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSI 84 (330)
T ss_dssp EEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred ceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEE
Confidence 4567899999999999988 9999999999999999875 445555 34 9999999999999999999999999999
Q ss_pred EeCCC-------CceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCC----CeeEEEecccCCceEEEEEcCC
Q 005096 213 WQNNM-------NNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFAR----CQEERSLTGHGWDVKSVDWHPT 281 (715)
Q Consensus 213 wd~~~-------~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~----~~~~~~l~~~~~~I~si~~spd 281 (715)
||++. .+....+.+|...|.+++|++++++|++++.|++|+|||++. .+.+..+.+|...|.+++|+++
T Consensus 85 w~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~ 164 (330)
T 2hes_X 85 WAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPS 164 (330)
T ss_dssp EEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSS
T ss_pred EEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCC
Confidence 99853 345667789999999999999999999999999999999943 2566788899999999999999
Q ss_pred CCEEEEEeCCCcEEEEECCCC--ceeEEeccCCCceEEEEEcCC--CCEEEEEECCCeEEEEECCCC--------eEEEE
Q 005096 282 KSLLVSGGKDSLVKLWDAKSG--RELCSFHGHKNMVLCVKWNQN--GNWVLTASKDQIIKLYDIRAM--------KELES 349 (715)
Q Consensus 282 g~~L~sgs~Dg~I~iwDl~s~--~~~~~~~~~~~~I~sl~~spd--g~~Lasgs~dg~I~iwDl~t~--------~~~~~ 349 (715)
+++|++++.|++|+|||++++ +++..+.+|...|.+++|+++ +.+|++++.|++|+|||++++ ..+..
T Consensus 165 ~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~ 244 (330)
T 2hes_X 165 EALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAI 244 (330)
T ss_dssp SSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeee
Confidence 999999999999999999876 678889999999999999998 678999999999999999754 34555
Q ss_pred eec-CCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCc--eEEEeeccCC-CEEEEEEcC--CCCEEEEEECCCeEE
Q 005096 350 FRG-HRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETP--QVEIHNVHDN-TVWDLAWHP--IGYLLCSGSNDHTTK 423 (715)
Q Consensus 350 ~~~-h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~--~~~~~~~h~~-~V~~l~~sp--dg~~L~sgs~Dg~I~ 423 (715)
+.. |...|.+++|++ +.+|++++.||.|+|||..++.. .......|.. .|++++|++ ++.+|++++.||+|+
T Consensus 245 ~~~~h~~~v~~v~~s~--~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~ 322 (330)
T 2hes_X 245 LPDVHKRQVYNVAWGF--NGLIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVN 322 (330)
T ss_dssp CCSCCSSCEEEEEECT--TSCEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEE
T ss_pred cccccccceEEEEEcC--CCEEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEE
Confidence 554 889999999995 35899999999999999876532 2233456776 899999999 689999999999999
Q ss_pred EEecCC
Q 005096 424 FWCRNR 429 (715)
Q Consensus 424 iWdl~~ 429 (715)
||+++.
T Consensus 323 ~W~~~~ 328 (330)
T 2hes_X 323 FWSLEK 328 (330)
T ss_dssp EEEC--
T ss_pred EEEecc
Confidence 999854
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-40 Score=363.50 Aligned_cols=284 Identities=23% Similarity=0.401 Sum_probs=254.6
Q ss_pred CCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCC------------------CEEEEEEcCCCCEEEE
Q 005096 142 KNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDH------------------AIRSMVWSHNDNWMVS 203 (715)
Q Consensus 142 ~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~------------------~V~~l~~spdg~~L~t 203 (715)
+|...|+|++|++||++||+|+ ++.++||++.+++.+..+..+.. .|++++|++++++|++
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s 140 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT 140 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEE
Confidence 6999999999999999999976 67899999999998888766542 3999999999999999
Q ss_pred EeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcC-CC
Q 005096 204 GDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHP-TK 282 (715)
Q Consensus 204 gs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~sp-dg 282 (715)
|+.|+.|+|||+++++.+..+..|...|.+++|++++++|++++.|++|++||+++++....+. +...+.+++|++ ++
T Consensus 141 ~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~ 219 (393)
T 1erj_A 141 GAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGVTTVAVSPGDG 219 (393)
T ss_dssp EETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSTTC
T ss_pred EcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE-cCCCcEEEEEECCCC
Confidence 9999999999999999999999999999999999999999999999999999999998887776 566899999999 89
Q ss_pred CEEEEEeCCCcEEEEECCCCceeEEe-------ccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCC-----------
Q 005096 283 SLLVSGGKDSLVKLWDAKSGRELCSF-------HGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAM----------- 344 (715)
Q Consensus 283 ~~L~sgs~Dg~I~iwDl~s~~~~~~~-------~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~----------- 344 (715)
++|++++.|+.|+|||+++++.+..+ .+|...|.+++|++++++|++++.|+.|+|||+++.
T Consensus 220 ~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~ 299 (393)
T 1erj_A 220 KYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNS 299 (393)
T ss_dssp CEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC--------------
T ss_pred CEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCC
Confidence 99999999999999999999887776 568889999999999999999999999999999763
Q ss_pred -eEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcC------CCCEEEEEE
Q 005096 345 -KELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHP------IGYLLCSGS 417 (715)
Q Consensus 345 -~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~sp------dg~~L~sgs 417 (715)
.+...+.+|...|.+++|++ ++.+|++++.|+.|++||+.++... ..+.+|.+.|.+++|++ ++.+|++++
T Consensus 300 ~~~~~~~~~h~~~v~~~~~~~-~~~~l~sgs~D~~v~iwd~~~~~~~-~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs 377 (393)
T 1erj_A 300 GTCEVTYIGHKDFVLSVATTQ-NDEYILSGSKDRGVLFWDKKSGNPL-LMLQGHRNSVISVAVANGSSLGPEYNVFATGS 377 (393)
T ss_dssp -CEEEEEECCSSCEEEEEECG-GGCEEEEEETTSEEEEEETTTCCEE-EEEECCSSCEEEEEECSSCTTCTTCEEEEEEE
T ss_pred CcceEEEecccCcEEEEEECC-CCCEEEEEeCCCeEEEEECCCCeEE-EEECCCCCCEEEEEecCCcCcCCCCCEEEEEC
Confidence 34567788999999999999 8899999999999999999887654 45567999999999986 678999999
Q ss_pred CCCeEEEEecCC
Q 005096 418 NDHTTKFWCRNR 429 (715)
Q Consensus 418 ~Dg~I~iWdl~~ 429 (715)
.||+|+||++..
T Consensus 378 ~Dg~i~iW~~~~ 389 (393)
T 1erj_A 378 GDCKARIWKYKK 389 (393)
T ss_dssp TTSEEEEEEEEE
T ss_pred CCCcEEECcccc
Confidence 999999999854
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-40 Score=354.92 Aligned_cols=289 Identities=18% Similarity=0.311 Sum_probs=248.7
Q ss_pred EEEecCCCCccEEEEEE-----cC-CCCEEEEEeCCCeEEEEeCCCC-------ceEEEEeccCCCEEEEEEcCCCCEEE
Q 005096 136 VHTSLNKNRCSINRVLW-----TP-TGRRLITGSQSGEFTLWNGQSF-------NFEMILQAHDHAIRSMVWSHNDNWMV 202 (715)
Q Consensus 136 ~~~~l~~H~~~I~~l~~-----sp-dg~~Latgs~dg~I~Iwd~~~~-------~~~~~l~~h~~~V~~l~~spdg~~L~ 202 (715)
....+.+|.+.|++++| ++ |+++|++|+.|++|+|||+.+. .....+.+|...|.+++|++++.+|+
T Consensus 13 ~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~ 92 (343)
T 2xzm_R 13 KRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAI 92 (343)
T ss_dssp EEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEE
T ss_pred eeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEE
Confidence 34578899999999999 76 9999999999999999998753 35677889999999999999999999
Q ss_pred EEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEec---ccCCceEEEEEc
Q 005096 203 SGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLT---GHGWDVKSVDWH 279 (715)
Q Consensus 203 tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~---~~~~~I~si~~s 279 (715)
+++.|++|+|||+++++....+..|...|.+++|++++++|++++.|++|++||+.... ...+. .|...|.+++|+
T Consensus 93 s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~-~~~~~~~~~~~~~v~~~~~~ 171 (343)
T 2xzm_R 93 SSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGEC-KFSSAEKENHSDWVSCVRYS 171 (343)
T ss_dssp EEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCE-EEECCTTTSCSSCEEEEEEC
T ss_pred EEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCc-eeeeecccCCCceeeeeeec
Confidence 99999999999999999999999999999999999999999999999999999997433 33332 678899999999
Q ss_pred CCC----------CEEEEEeCCCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCe-EEE
Q 005096 280 PTK----------SLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMK-ELE 348 (715)
Q Consensus 280 pdg----------~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~-~~~ 348 (715)
+++ .+|++++.|+.|++||. +.+....+..|...|++++|++++++|++++.|+.|+|||+++.. ...
T Consensus 172 ~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~ 250 (343)
T 2xzm_R 172 PIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQR 250 (343)
T ss_dssp CCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSE
T ss_pred cccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccce
Confidence 987 78999999999999994 466777888999999999999999999999999999999995443 334
Q ss_pred EeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceE--EEe----------eccCCCEEEEEEcCCCCEEEEE
Q 005096 349 SFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQV--EIH----------NVHDNTVWDLAWHPIGYLLCSG 416 (715)
Q Consensus 349 ~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~--~~~----------~~h~~~V~~l~~spdg~~L~sg 416 (715)
.+ .+...|.+++|++ ++.+|+++ .|+.|++||+.+..... .+. .+|...|++++|++++.+|++|
T Consensus 251 ~~-~~~~~v~~v~~sp-~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg 327 (343)
T 2xzm_R 251 EF-DAGSTINQIAFNP-KLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAG 327 (343)
T ss_dssp EE-ECSSCEEEEEECS-SSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEE
T ss_pred ee-cCCCcEEEEEECC-CCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEe
Confidence 43 3556799999999 67777655 57889999997765432 211 1577889999999999999999
Q ss_pred ECCCeEEEEecCC
Q 005096 417 SNDHTTKFWCRNR 429 (715)
Q Consensus 417 s~Dg~I~iWdl~~ 429 (715)
+.||.|++|+++.
T Consensus 328 ~~Dg~v~~w~~~~ 340 (343)
T 2xzm_R 328 FTDGVIRTFSFET 340 (343)
T ss_dssp ETTSEEEEEEEEE
T ss_pred cCCceEEEEEEEc
Confidence 9999999999853
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-41 Score=387.51 Aligned_cols=288 Identities=19% Similarity=0.386 Sum_probs=250.5
Q ss_pred EecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEe-------ccCCCEEEEEEcCCCCEEEEEeCCCcE
Q 005096 138 TSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQ-------AHDHAIRSMVWSHNDNWMVSGDDGGAI 210 (715)
Q Consensus 138 ~~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~-------~h~~~V~~l~~spdg~~L~tgs~dg~I 210 (715)
..+.+|...|++++|++|+++|++++.|++|+|||+.+++.+..+. +|.+.|.+++|++++++|++++.|++|
T Consensus 184 ~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v 263 (611)
T 1nr0_A 184 STFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTI 263 (611)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred eeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeE
Confidence 4578999999999999999999999999999999999999888884 799999999999999999999999999
Q ss_pred EEEeCCCCceee-------------------------------------------eecCCCCCeEEEEEecCCCEEEEEE
Q 005096 211 KYWQNNMNNVKA-------------------------------------------NKSAHKESVRDLSFCRTDLKFCSCS 247 (715)
Q Consensus 211 ~iwd~~~~~~~~-------------------------------------------~~~~h~~~I~~l~~spd~~~Las~s 247 (715)
+|||+.+++... .+.+|...|.+++|++++++|++++
T Consensus 264 ~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s 343 (611)
T 1nr0_A 264 KIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSAD 343 (611)
T ss_dssp EEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred EEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEe
Confidence 999998765432 2346889999999999999999999
Q ss_pred CCCcEEEEECCCCeeEEEe-c-----------------------------------------------------------
Q 005096 248 DDTTVKVWDFARCQEERSL-T----------------------------------------------------------- 267 (715)
Q Consensus 248 ~Dg~V~iwdl~~~~~~~~l-~----------------------------------------------------------- 267 (715)
.|++|++||+.+++....+ .
T Consensus 344 ~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg 423 (611)
T 1nr0_A 344 AEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADG 423 (611)
T ss_dssp TTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTS
T ss_pred CCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCC
Confidence 9999999998765432221 0
Q ss_pred ----------------------ccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCce--eEEeccCCCceEEEEEcCC
Q 005096 268 ----------------------GHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRE--LCSFHGHKNMVLCVKWNQN 323 (715)
Q Consensus 268 ----------------------~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~--~~~~~~~~~~I~sl~~spd 323 (715)
.+...+.+++|+||+++|++++.|++|+|||+++++. +.. ..|...|++++|++|
T Consensus 424 ~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fspd 502 (611)
T 1nr0_A 424 DIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSNN 502 (611)
T ss_dssp SCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEEEECTT
T ss_pred cEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeec-cCCCCceEEEEECCC
Confidence 0123467899999999999999999999999987643 233 568999999999999
Q ss_pred CCEEEEEECCCeEEEEECCC-CeEEEE--eecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceE-EEeecc-C
Q 005096 324 GNWVLTASKDQIIKLYDIRA-MKELES--FRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQV-EIHNVH-D 398 (715)
Q Consensus 324 g~~Lasgs~dg~I~iwDl~t-~~~~~~--~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~-~~~~~h-~ 398 (715)
+++|++++.|++|++||+.+ ++.+.. +..|...|.+++|+| ++++|++++.|++|+|||+++..... .+..+| .
T Consensus 503 g~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fsp-dg~~lasgs~D~~v~lW~~~~~~~~~~~~~~~h~~ 581 (611)
T 1nr0_A 503 GAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSP-DNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAM 581 (611)
T ss_dssp SSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTT
T ss_pred CCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEEECC-CCCEEEEEECCCcEEEEECCCcccccchhhccCcc
Confidence 99999999999999999987 666554 345999999999999 89999999999999999998766443 667788 8
Q ss_pred CCEEEEEEcCCCCEEEEEECCCeEEEEecC
Q 005096 399 NTVWDLAWHPIGYLLCSGSNDHTTKFWCRN 428 (715)
Q Consensus 399 ~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~ 428 (715)
..|++++|++++. |++++.|++|++|++.
T Consensus 582 ~~v~~v~fs~d~~-l~s~~~D~~i~lW~~~ 610 (611)
T 1nr0_A 582 SSVNSVIWLNETT-IVSAGQDSNIKFWNVP 610 (611)
T ss_dssp SCEEEEEEEETTE-EEEEETTSCEEEEECC
T ss_pred cCeeEEEEcCCCE-EEEecCCCCEEEEecc
Confidence 9999999999998 9999999999999973
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-39 Score=345.49 Aligned_cols=292 Identities=21% Similarity=0.353 Sum_probs=257.6
Q ss_pred EEEecCCCCccEEEEEEcCC-CCEEEEEeCCCeEEEEeCCCCc-----eEEEEeccCCCEEEEEEcCCCCEEEEEeCCCc
Q 005096 136 VHTSLNKNRCSINRVLWTPT-GRRLITGSQSGEFTLWNGQSFN-----FEMILQAHDHAIRSMVWSHNDNWMVSGDDGGA 209 (715)
Q Consensus 136 ~~~~l~~H~~~I~~l~~spd-g~~Latgs~dg~I~Iwd~~~~~-----~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~ 209 (715)
+..+|++|++.|++|+|+|+ +++||+|+.|++|+|||+.+.+ ....+.+|...|.+++|++++++|++++.|+.
T Consensus 30 l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~ 109 (340)
T 4aow_A 30 LRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGT 109 (340)
T ss_dssp EEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred EEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEccccc
Confidence 34579999999999999997 6899999999999999987643 46678899999999999999999999999999
Q ss_pred EEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeE-EEecccCCceEEEEEcCCC--CEEE
Q 005096 210 IKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEE-RSLTGHGWDVKSVDWHPTK--SLLV 286 (715)
Q Consensus 210 I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~-~~l~~~~~~I~si~~spdg--~~L~ 286 (715)
|++|+............+...+..+.+++++.+|++++.|+.+++||+...... ..+..|...|.+++|++++ .+++
T Consensus 110 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 189 (340)
T 4aow_A 110 LRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIV 189 (340)
T ss_dssp EEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEE
T ss_pred ceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEE
Confidence 999999999888888889999999999999999999999999999999765443 4456788899999998765 5788
Q ss_pred EEeCCCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCC
Q 005096 287 SGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFH 366 (715)
Q Consensus 287 sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~ 366 (715)
+++.|+.|++||+++++.+..+.+|...|++++|++++++|++++.|+.|+|||+++.+.+..+.. ...|.+++|++ +
T Consensus 190 s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~~~-~ 267 (340)
T 4aow_A 190 SCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG-GDIINALCFSP-N 267 (340)
T ss_dssp EEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEEC-SSCEEEEEECS-S
T ss_pred EEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecC-CceEEeeecCC-C
Confidence 999999999999999999999999999999999999999999999999999999999999988875 46799999998 5
Q ss_pred CCEEEEEeCCCcEEEEEcCCCCceEEE--------eeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCCC
Q 005096 367 EEYFVSGSLDGSIFHWLVGHETPQVEI--------HNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRP 430 (715)
Q Consensus 367 ~~~l~sgs~DG~I~iwd~~~~~~~~~~--------~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~ 430 (715)
+. +++++.|+.|+|||++.......+ ...|...|++++|++|+++|++|+.||.|+|||++..
T Consensus 268 ~~-~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tG 338 (340)
T 4aow_A 268 RY-WLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIG 338 (340)
T ss_dssp SS-EEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC-
T ss_pred Cc-eeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCc
Confidence 54 455667999999999876544332 2357889999999999999999999999999999754
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-40 Score=349.96 Aligned_cols=291 Identities=16% Similarity=0.257 Sum_probs=260.9
Q ss_pred CCcccchhhhhcccccccceEeeehhhheeeEEEEEeccCCCccccccCchhhhcCccceeecCCCCCceeeeEEEEecC
Q 005096 62 DAHGDSFAAKRMRKLTQRRAVDYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSFAAKFVHTSLN 141 (715)
Q Consensus 62 ~~h~~~~~~~r~~~~~~~~~~~~~~~~~~~~~irvW~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~ 141 (715)
.+|.+.+....+.... ....+++.+...+.+||+|+..... ......+.
T Consensus 29 ~~H~~~V~~v~~~~~~-~~~~~~l~tgs~D~~v~vW~~~~~~------------------------------~~~~~~l~ 77 (321)
T 3ow8_A 29 QAHDDAIWSVAWGTNK-KENSETVVTGSLDDLVKVWKWRDER------------------------------LDLQWSLE 77 (321)
T ss_dssp TSSSSCEEEEEEC--------CEEEEEETTSCEEEEEEETTE------------------------------EEEEEEEC
T ss_pred ccCCCcEEEEEEecCC-CCCCCEEEEEcCCCCEEEEECCCCC------------------------------eeeeeeec
Confidence 4555555554442211 1223467777888999999864321 01223578
Q ss_pred CCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcee
Q 005096 142 KNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVK 221 (715)
Q Consensus 142 ~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~ 221 (715)
+|...|.+++|++++.+|++++.|++|+|||+.+++.+..+..|...+.+++|++++++|++++.|+.|++|++++++..
T Consensus 78 gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~ 157 (321)
T 3ow8_A 78 GHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKE 157 (321)
T ss_dssp CCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEE
T ss_pred cCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCcee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred eeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 005096 222 ANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKS 301 (715)
Q Consensus 222 ~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s 301 (715)
..+..+...|.+++|++++++|++++.|+.|++||+++++.+..+.+|...|++++|++++++|++++.|+.|+|||+++
T Consensus 158 ~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~ 237 (321)
T 3ow8_A 158 YSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQH 237 (321)
T ss_dssp EEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTT
T ss_pred EEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCC
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEE
Q 005096 302 GRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFH 381 (715)
Q Consensus 302 ~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~i 381 (715)
++.+..+.+|...|.+++|++++++|++++.|+.|+|||+++++++..+..|...|.+++|++ ++.+|++++.||.|+|
T Consensus 238 ~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~-~g~~l~s~~~d~~i~v 316 (321)
T 3ow8_A 238 ANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNG-NGSKIVSVGDDQEIHI 316 (321)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTCCEEE
T ss_pred cceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECC-CCCEEEEEeCCCeEEE
Confidence 999999999999999999999999999999999999999999999999999999999999999 8899999999999999
Q ss_pred EEc
Q 005096 382 WLV 384 (715)
Q Consensus 382 wd~ 384 (715)
||+
T Consensus 317 wd~ 319 (321)
T 3ow8_A 317 YDC 319 (321)
T ss_dssp EEC
T ss_pred EeC
Confidence 996
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-39 Score=344.20 Aligned_cols=291 Identities=16% Similarity=0.234 Sum_probs=265.6
Q ss_pred EEEEecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 005096 135 FVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQ 214 (715)
Q Consensus 135 ~~~~~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd 214 (715)
.....+.+|.+.|++++|++++++|++++.||.|+|||+.+++.+..+..|...|.+++|++++++|++++.||.|++||
T Consensus 23 ~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 102 (369)
T 3zwl_B 23 MKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWD 102 (369)
T ss_dssp EEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEE
T ss_pred cccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEE
Confidence 34457889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeeeecCCCCCeEEEEEecCCCEEEEEECC-----CcEEEEECCCCe-----------eEEEecccCC--ceEEE
Q 005096 215 NNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDD-----TTVKVWDFARCQ-----------EERSLTGHGW--DVKSV 276 (715)
Q Consensus 215 ~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~D-----g~V~iwdl~~~~-----------~~~~l~~~~~--~I~si 276 (715)
+.+++.+..+. +...|.+++|++++++|++++.+ +.|++||+++.. .+..+..+.. .+.++
T Consensus 103 ~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (369)
T 3zwl_B 103 VSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVA 181 (369)
T ss_dssp TTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEE
T ss_pred CCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEE
Confidence 99998888876 88899999999999999999999 999999986543 2334444555 89999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCC-CceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCC
Q 005096 277 DWHPTKSLLVSGGKDSLVKLWDAKS-GRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRK 355 (715)
Q Consensus 277 ~~spdg~~L~sgs~Dg~I~iwDl~s-~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~ 355 (715)
+|++++++|++++.|+.|++||+++ .+.+..+..|...|.+++|++++++|++++.|+.|++||+++++.+..+. +..
T Consensus 182 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~ 260 (369)
T 3zwl_B 182 GWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE-TDC 260 (369)
T ss_dssp EECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSS
T ss_pred EEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec-CCC
Confidence 9999999999999999999999998 78888888899999999999999999999999999999999999988888 788
Q ss_pred CeEEEEEccCCCCEEEEEeCCC--------------cEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCe
Q 005096 356 DVTALAWHPFHEEYFVSGSLDG--------------SIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHT 421 (715)
Q Consensus 356 ~V~~l~~sp~~~~~l~sgs~DG--------------~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~ 421 (715)
.+.+++|++ ++.++++++.++ .|++||+.+...... +..|...|++++|++++++|++++.||.
T Consensus 261 ~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~s~~~dg~ 338 (369)
T 3zwl_B 261 PLNTAVITP-LKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGR-VQGHFGPLNTVAISPQGTSYASGGEDGF 338 (369)
T ss_dssp CEEEEEECS-SSSEEEEEECCC-------------CEEEEEETTTCCEEEE-EECCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred CceeEEecC-CCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhh-eecccCcEEEEEECCCCCEEEEEcCCCe
Confidence 899999999 888999998888 899999988765544 4568999999999999999999999999
Q ss_pred EEEEecCC
Q 005096 422 TKFWCRNR 429 (715)
Q Consensus 422 I~iWdl~~ 429 (715)
|+||+++.
T Consensus 339 v~iw~~~~ 346 (369)
T 3zwl_B 339 IRLHHFEK 346 (369)
T ss_dssp EEEEEECH
T ss_pred EEEEECcc
Confidence 99999965
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-39 Score=370.76 Aligned_cols=282 Identities=27% Similarity=0.494 Sum_probs=259.5
Q ss_pred EEecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 005096 137 HTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNN 216 (715)
Q Consensus 137 ~~~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~ 216 (715)
...+.+|...|++++|++++++|++++.|+.|++||... +.+..+..|...|.+++|++++++|++++.|+.|++||.
T Consensus 296 ~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~-~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~- 373 (577)
T 2ymu_A 296 LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG-QHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR- 373 (577)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTS-CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-
T ss_pred EEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC-CeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-
Confidence 346789999999999999999999999999999999765 456678899999999999999999999999999999996
Q ss_pred CCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEE
Q 005096 217 MNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKL 296 (715)
Q Consensus 217 ~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~i 296 (715)
+++.+..+..|...|.+++|++|+++|++++.|+.|++||. +++.+..+.+|...|++++|++|+++|++++.|+.|++
T Consensus 374 ~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~ 452 (577)
T 2ymu_A 374 NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKL 452 (577)
T ss_dssp TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEE
Confidence 45677778899999999999999999999999999999996 56778888999999999999999999999999999999
Q ss_pred EECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCC
Q 005096 297 WDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLD 376 (715)
Q Consensus 297 wDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~D 376 (715)
||+ +++.+..+..|...|++++|++|+++|++++.|+.|+|||. +++.+..+.+|...|++|+|++ ++++|++++.|
T Consensus 453 w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~-dg~~l~s~~~d 529 (577)
T 2ymu_A 453 WNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSP-DGQTIASASDD 529 (577)
T ss_dssp EET-TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECT-TSSCEEEEETT
T ss_pred EEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcC-CCCEEEEEECc
Confidence 996 46788888999999999999999999999999999999995 6889999999999999999999 88999999999
Q ss_pred CcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEe
Q 005096 377 GSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWC 426 (715)
Q Consensus 377 G~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWd 426 (715)
|.|+|||.. ......+.+|.+.|++++|++|+++|++++.|++|++||
T Consensus 530 g~v~lwd~~--~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 530 KTVKLWNRN--GQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp SEEEEECTT--SCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CEEEEEeCC--CCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 999999963 344566678999999999999999999999999999997
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-40 Score=361.64 Aligned_cols=287 Identities=24% Similarity=0.472 Sum_probs=260.5
Q ss_pred CCCcccchhhhhcccccccceEeeehhhheeeEEEEEeccCCCccccccCchhhhcCccceeecCCCCCceeeeEEEEec
Q 005096 61 YDAHGDSFAAKRMRKLTQRRAVDYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSFAAKFVHTSL 140 (715)
Q Consensus 61 ~~~h~~~~~~~r~~~~~~~~~~~~~~~~~~~~~irvW~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l 140 (715)
+.+|...+.+..+.. ...++.+...+.+|++|+....+ ....+
T Consensus 104 l~gh~~~V~~~~~~p-----~~~~l~s~s~Dg~i~vwd~~~~~--------------------------------~~~~l 146 (410)
T 1vyh_C 104 LSGHRSPVTRVIFHP-----VFSVMVSASEDATIKVWDYETGD--------------------------------FERTL 146 (410)
T ss_dssp EECCSSCEEEEEECS-----SSSEEEEEESSSCEEEEETTTCC--------------------------------CCEEE
T ss_pred ecccCCcEEEEEEcC-----CCCEEEEEeCCCeEEEEECCCCc--------------------------------EEEEE
Confidence 455665555544433 23466777788999999875432 01256
Q ss_pred CCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCce
Q 005096 141 NKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNV 220 (715)
Q Consensus 141 ~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~ 220 (715)
.+|.+.|++++|++++++|++|+.|++|+|||+.+++.+..+.+|...|.+++|++++++|++++.|++|++||+.++..
T Consensus 147 ~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~ 226 (410)
T 1vyh_C 147 KGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYC 226 (410)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCE
T ss_pred eccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcE
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCC-------------------
Q 005096 221 KANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPT------------------- 281 (715)
Q Consensus 221 ~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spd------------------- 281 (715)
+..+..|...|.++++++++.+|++++.|++|++||+.+.+....+..|...|.+++|+++
T Consensus 227 ~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (410)
T 1vyh_C 227 VKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGK 306 (410)
T ss_dssp EEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC------
T ss_pred EEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCC
Confidence 9999999999999999999999999999999999999999999999999999999999986
Q ss_pred -CCEEEEEeCCCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEE
Q 005096 282 -KSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTAL 360 (715)
Q Consensus 282 -g~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l 360 (715)
+.+|++++.|+.|+|||+++++++..+.+|...|++++|++++++|++++.|+.|+|||+++++.+..+..|...|+++
T Consensus 307 ~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l 386 (410)
T 1vyh_C 307 PGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSL 386 (410)
T ss_dssp -CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEE
T ss_pred CCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEE
Confidence 6789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCCCEEEEEeCCCcEEEEEcC
Q 005096 361 AWHPFHEEYFVSGSLDGSIFHWLVG 385 (715)
Q Consensus 361 ~~sp~~~~~l~sgs~DG~I~iwd~~ 385 (715)
+|++ ++.+|++|+.||+|+||+++
T Consensus 387 ~~~~-~~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 387 DFHK-TAPYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp EECS-SSSCEEEEETTSEEEEEC--
T ss_pred EEcC-CCCEEEEEeCCCcEEEEeCC
Confidence 9999 88899999999999999863
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-39 Score=353.09 Aligned_cols=290 Identities=17% Similarity=0.226 Sum_probs=262.2
Q ss_pred EEEecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc------eEEEEeccCCCEEEEEEcCC----C---CEEE
Q 005096 136 VHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFN------FEMILQAHDHAIRSMVWSHN----D---NWMV 202 (715)
Q Consensus 136 ~~~~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~------~~~~l~~h~~~V~~l~~spd----g---~~L~ 202 (715)
+...+.+|.+.|++|+|++ ++|++++.||.|+|||+.+.+ .+..+..|...|++++|+++ + ++|+
T Consensus 8 ~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~ 85 (397)
T 1sq9_A 8 TANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVA 85 (397)
T ss_dssp EEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEE
T ss_pred hhhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEE
Confidence 4567889999999999998 799999999999999999887 78889999999999999999 9 9999
Q ss_pred EEeCCCcEEEEeCCCCce-----eeeecCC-----CCCeEEEEEe----cCCCE-EEEEECCCcEEEEECCC------Ce
Q 005096 203 SGDDGGAIKYWQNNMNNV-----KANKSAH-----KESVRDLSFC----RTDLK-FCSCSDDTTVKVWDFAR------CQ 261 (715)
Q Consensus 203 tgs~dg~I~iwd~~~~~~-----~~~~~~h-----~~~I~~l~~s----pd~~~-Las~s~Dg~V~iwdl~~------~~ 261 (715)
+++.|+.|++||+.+++. ...+..| ...|.+++|+ +++++ |++++.|+.|++||+++ .+
T Consensus 86 s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 165 (397)
T 1sq9_A 86 TTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSL 165 (397)
T ss_dssp EEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHT
T ss_pred EEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccc
Confidence 999999999999988876 7777788 5999999999 99999 99999999999999987 55
Q ss_pred eEE-----Ee-------cccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEecc---C---CCceEEEEEcCC
Q 005096 262 EER-----SL-------TGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHG---H---KNMVLCVKWNQN 323 (715)
Q Consensus 262 ~~~-----~l-------~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~---~---~~~I~sl~~spd 323 (715)
.+. .+ ..|...|.+++|++++ +|++++.|+.|++||+++++.+..+.. | ...|.+++|+++
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~ 244 (397)
T 1sq9_A 166 TLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQ 244 (397)
T ss_dssp TTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSS
T ss_pred eeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCC
Confidence 555 66 4478899999999999 999999999999999999999999988 8 899999999999
Q ss_pred CCEEEEEECC---CeEEEEECCCCeEEEEeec-------------CCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCC
Q 005096 324 GNWVLTASKD---QIIKLYDIRAMKELESFRG-------------HRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHE 387 (715)
Q Consensus 324 g~~Lasgs~d---g~I~iwDl~t~~~~~~~~~-------------h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~ 387 (715)
+++|++++.| +.|++||+++++.+..+.. |...|.+++|++ ++.+|++++.||.|+|||+++.
T Consensus 245 ~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~ 323 (397)
T 1sq9_A 245 GSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFND-SGETLCSAGWDGKLRFWDVKTK 323 (397)
T ss_dssp TTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECS-SSSEEEEEETTSEEEEEETTTT
T ss_pred CCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECC-CCCEEEEEeCCCeEEEEEcCCC
Confidence 9999999999 9999999999999999998 999999999999 8899999999999999999887
Q ss_pred CceEEEee-----cc---------------CCCEEEEEEcCCC----------CEEEEEECCCeEEEEecCC
Q 005096 388 TPQVEIHN-----VH---------------DNTVWDLAWHPIG----------YLLCSGSNDHTTKFWCRNR 429 (715)
Q Consensus 388 ~~~~~~~~-----~h---------------~~~V~~l~~spdg----------~~L~sgs~Dg~I~iWdl~~ 429 (715)
.....+.. .| ...|++++|++++ .+|++++.||.|+||+++.
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 395 (397)
T 1sq9_A 324 ERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAG 395 (397)
T ss_dssp EEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC
T ss_pred ceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCC
Confidence 66555441 46 8899999999998 7999999999999999864
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-38 Score=336.07 Aligned_cols=282 Identities=18% Similarity=0.303 Sum_probs=256.5
Q ss_pred cCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce---EEEEe--ccCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 005096 140 LNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNF---EMILQ--AHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQ 214 (715)
Q Consensus 140 l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~---~~~l~--~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd 214 (715)
..+|...|++++|++++++|++++ ||.|+|||+.+.+. ...+. .|...|.+++|++++++|++++.|+.|++||
T Consensus 47 ~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d 125 (337)
T 1gxr_A 47 TLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWD 125 (337)
T ss_dssp EECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEE
T ss_pred eccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEE
Confidence 347999999999999999999999 99999999987653 33333 7889999999999999999999999999999
Q ss_pred CCCCc--eeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCC
Q 005096 215 NNMNN--VKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDS 292 (715)
Q Consensus 215 ~~~~~--~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg 292 (715)
+++++ ....+..|...|.+++|++++++|++++.|+.|++||+++++.+..+..|...|.+++|++++++|++++.|+
T Consensus 126 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 205 (337)
T 1gxr_A 126 LAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDN 205 (337)
T ss_dssp CCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred CCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCC
Confidence 99876 5667788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEE
Q 005096 293 LVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVS 372 (715)
Q Consensus 293 ~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~s 372 (715)
.|++||+++++.+..+. +...+.+++|++++++|++++.|+.|++||+++.+. ..+..|...|.+++|++ ++++|++
T Consensus 206 ~i~~~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~-~~~~~~~~~v~~~~~~~-~~~~l~~ 282 (337)
T 1gxr_A 206 TVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK-YQLHLHESCVLSLKFAY-CGKWFVS 282 (337)
T ss_dssp EEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCE-EEECCCSSCEEEEEECT-TSSEEEE
T ss_pred cEEEEECCCCceEeeec-CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCe-EEEcCCccceeEEEECC-CCCEEEE
Confidence 99999999998887775 678899999999999999999999999999998765 46678999999999999 8899999
Q ss_pred EeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEec
Q 005096 373 GSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCR 427 (715)
Q Consensus 373 gs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl 427 (715)
++.||.|++||+.+...... ..|...|++++|++++++|++++.||.|++|++
T Consensus 283 ~~~dg~i~~~~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 283 TGKDNLLNAWRTPYGASIFQ--SKESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp EETTSEEEEEETTTCCEEEE--EECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred ecCCCcEEEEECCCCeEEEE--ecCCCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence 99999999999988776533 347889999999999999999999999999997
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-39 Score=345.21 Aligned_cols=287 Identities=16% Similarity=0.215 Sum_probs=255.2
Q ss_pred CCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc--eEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 005096 141 NKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFN--FEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN 218 (715)
Q Consensus 141 ~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~--~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~ 218 (715)
..|.+.|++++|++++++|++++.|+.|+|||+.+.+ .+..+..|...|.+++|++++++|++++.|+.|++||++++
T Consensus 5 ~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 84 (372)
T 1k8k_C 5 SFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGR 84 (372)
T ss_dssp ESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETT
T ss_pred cccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCC
Confidence 4589999999999999999999999999999999887 88889999999999999999999999999999999999888
Q ss_pred ceeee--ecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCee----EEEecccCCceEEEEEcCCCCEEEEEeCCC
Q 005096 219 NVKAN--KSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQE----ERSLTGHGWDVKSVDWHPTKSLLVSGGKDS 292 (715)
Q Consensus 219 ~~~~~--~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~----~~~l~~~~~~I~si~~spdg~~L~sgs~Dg 292 (715)
+.... +..|...|.+++|++++++|++++.|+.|++||++..+. ......|...|.+++|++++++|++++.|+
T Consensus 85 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 164 (372)
T 1k8k_C 85 TWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDF 164 (372)
T ss_dssp EEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTS
T ss_pred eeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCC
Confidence 64433 367889999999999999999999999999999987652 233356789999999999999999999999
Q ss_pred cEEEEECC------------------CCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCC
Q 005096 293 LVKLWDAK------------------SGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHR 354 (715)
Q Consensus 293 ~I~iwDl~------------------s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~ 354 (715)
.|++||++ +++.+..+..|...|.+++|++++++|++++.|+.|++||+++++.+..+..|.
T Consensus 165 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~ 244 (372)
T 1k8k_C 165 KCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASET 244 (372)
T ss_dssp CEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSS
T ss_pred CEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCC
Confidence 99999954 678888888899999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEccCCCCEEEEEeCCCcEEEEEcCC--CCc-------------------------------e-------EEEe
Q 005096 355 KDVTALAWHPFHEEYFVSGSLDGSIFHWLVGH--ETP-------------------------------Q-------VEIH 394 (715)
Q Consensus 355 ~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~--~~~-------------------------------~-------~~~~ 394 (715)
..|.+++|++ ++.+|+++ .|+.|++|+++. +.. . ..+.
T Consensus 245 ~~v~~~~~~~-~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (372)
T 1k8k_C 245 LPLLAVTFIT-ESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLD 322 (372)
T ss_dssp CCEEEEEEEE-TTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCS
T ss_pred CCeEEEEEec-CCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCcccccccc
Confidence 9999999999 77777777 899999999977 210 0 1223
Q ss_pred eccCCCEEEEEEc-CCC---CEEEEEECCCeEEEEecCC
Q 005096 395 NVHDNTVWDLAWH-PIG---YLLCSGSNDHTTKFWCRNR 429 (715)
Q Consensus 395 ~~h~~~V~~l~~s-pdg---~~L~sgs~Dg~I~iWdl~~ 429 (715)
.+|...|++++|+ +++ .+|++++.||.|+||+++.
T Consensus 323 ~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~ 361 (372)
T 1k8k_C 323 SLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS 361 (372)
T ss_dssp SSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred ccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecC
Confidence 4799999999976 566 9999999999999999854
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-38 Score=358.06 Aligned_cols=311 Identities=26% Similarity=0.431 Sum_probs=271.5
Q ss_pred EEecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 005096 137 HTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNN 216 (715)
Q Consensus 137 ~~~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~ 216 (715)
...+.+|...|++++|++++++|++++.|+.|++||.. ++....+.+|...|.+++|++++++|++++.|+.|++||++
T Consensus 255 ~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~-~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~ 333 (577)
T 2ymu_A 255 LQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN 333 (577)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred EEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCC-CcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 34678899999999999999999999999999999964 57788899999999999999999999999999999999987
Q ss_pred CCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEE
Q 005096 217 MNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKL 296 (715)
Q Consensus 217 ~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~i 296 (715)
... ...+..|...|.+++|++++++|++++.|+.|++||. +++.+..+..|...|++++|++++++|++++.|+.|++
T Consensus 334 ~~~-~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~ 411 (577)
T 2ymu_A 334 GQH-LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKL 411 (577)
T ss_dssp SCE-EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEE
T ss_pred CCe-eEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEE
Confidence 554 4566789999999999999999999999999999995 56778888899999999999999999999999999999
Q ss_pred EECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCC
Q 005096 297 WDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLD 376 (715)
Q Consensus 297 wDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~D 376 (715)
||. +++.+..+..|...|++++|++|+++|++++.|+.|++||+ +++.+..+..|...|++++|++ ++++|++++.|
T Consensus 412 ~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~sp-d~~~las~~~d 488 (577)
T 2ymu_A 412 WNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSP-DGQTIASASDD 488 (577)
T ss_dssp ECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECT-TSCEEEEEETT
T ss_pred EeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcC-CCCEEEEEeCC
Confidence 995 57788888999999999999999999999999999999996 5788899999999999999999 89999999999
Q ss_pred CcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCCCCCcccccccccCCccccceeeEEeec
Q 005096 377 GSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGDTARDKFNMGQNQGYGEQNAVFAGR 456 (715)
Q Consensus 377 G~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 456 (715)
+.|+|||.. ......+.+|...|++++|++|+++|++++.||.|+|||++ ++.. ....++......+.+.
T Consensus 489 ~~i~iw~~~--~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~--~~~~------~~~~~h~~~v~~~~fs 558 (577)
T 2ymu_A 489 KTVKLWNRN--GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN--GQLL------QTLTGHSSSVWGVAFS 558 (577)
T ss_dssp SEEEEEETT--SCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT--SCEE------EEEECCSSCEEEEEEC
T ss_pred CEEEEEcCC--CCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeCC--CCEE------EEEcCCCCCEEEEEEc
Confidence 999999963 33455667899999999999999999999999999999963 2211 1122344455555555
Q ss_pred CCCCccC
Q 005096 457 MPGNFPL 463 (715)
Q Consensus 457 ~~~~~~~ 463 (715)
.++.+++
T Consensus 559 ~dg~~l~ 565 (577)
T 2ymu_A 559 PDGQTIA 565 (577)
T ss_dssp TTSSCEE
T ss_pred CCCCEEE
Confidence 5555544
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-38 Score=373.37 Aligned_cols=291 Identities=20% Similarity=0.334 Sum_probs=254.3
Q ss_pred EEEecCCCCccEEEEEEcCCC-CEEEEEeCCCeEEEEeCCCC-----ceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCc
Q 005096 136 VHTSLNKNRCSINRVLWTPTG-RRLITGSQSGEFTLWNGQSF-----NFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGA 209 (715)
Q Consensus 136 ~~~~l~~H~~~I~~l~~spdg-~~Latgs~dg~I~Iwd~~~~-----~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~ 209 (715)
+...+++|.+.|++|+|++++ ++|++|+.|++|+|||+.+. .....+.+|...|.+++|++++++|++|+.|+.
T Consensus 374 ~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~ 453 (694)
T 3dm0_A 374 LKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGE 453 (694)
T ss_dssp EEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred hhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCc
Confidence 445688999999999999875 79999999999999998763 346778999999999999999999999999999
Q ss_pred EEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEe---cccCCceEEEEEcCCC--CE
Q 005096 210 IKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSL---TGHGWDVKSVDWHPTK--SL 284 (715)
Q Consensus 210 I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l---~~~~~~I~si~~spdg--~~ 284 (715)
|+|||+.++.....+..|...|.+++|++++++|++++.|++|+|||+......... .+|...|.+++|++++ .+
T Consensus 454 v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~ 533 (694)
T 3dm0_A 454 LRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPT 533 (694)
T ss_dssp EEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCE
T ss_pred EEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcce
Confidence 999999999999999999999999999999999999999999999998665433332 3578889999999986 58
Q ss_pred EEEEeCCCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEcc
Q 005096 285 LVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHP 364 (715)
Q Consensus 285 L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp 364 (715)
|++++.|++|+|||+++++.+..+.+|...|++++|++++++|++++.|+.|+|||+++++.+..+.. ...|.+++|++
T Consensus 534 l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~sp 612 (694)
T 3dm0_A 534 IVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEA-NSVIHALCFSP 612 (694)
T ss_dssp EEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBC-SSCEEEEEECS
T ss_pred EEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecC-CCcEEEEEEcC
Confidence 99999999999999999999999999999999999999999999999999999999999999887764 56799999999
Q ss_pred CCCCEEEEEeCCCcEEEEEcCCCCceEEEeec------------------cCCCEEEEEEcCCCCEEEEEECCCeEEEEe
Q 005096 365 FHEEYFVSGSLDGSIFHWLVGHETPQVEIHNV------------------HDNTVWDLAWHPIGYLLCSGSNDHTTKFWC 426 (715)
Q Consensus 365 ~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~------------------h~~~V~~l~~spdg~~L~sgs~Dg~I~iWd 426 (715)
++.+|++++ |+.|+|||+++......+... +...|++++|++|+++|++|+.||+|+||+
T Consensus 613 -~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~ 690 (694)
T 3dm0_A 613 -NRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWG 690 (694)
T ss_dssp -SSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred -CCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEe
Confidence 777777765 556999999887654433211 112478999999999999999999999999
Q ss_pred cCC
Q 005096 427 RNR 429 (715)
Q Consensus 427 l~~ 429 (715)
+.+
T Consensus 691 i~~ 693 (694)
T 3dm0_A 691 IGR 693 (694)
T ss_dssp C--
T ss_pred ccC
Confidence 853
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-39 Score=345.15 Aligned_cols=288 Identities=19% Similarity=0.301 Sum_probs=255.4
Q ss_pred EecCCCCccEEEEEEcCC----CCEEEEEeCCCeEEEEeCCCCceEEEEec-----cCCCEEEEEEcCC----CCEEEEE
Q 005096 138 TSLNKNRCSINRVLWTPT----GRRLITGSQSGEFTLWNGQSFNFEMILQA-----HDHAIRSMVWSHN----DNWMVSG 204 (715)
Q Consensus 138 ~~l~~H~~~I~~l~~spd----g~~Latgs~dg~I~Iwd~~~~~~~~~l~~-----h~~~V~~l~~spd----g~~L~tg 204 (715)
....+|...|++++|+|+ ...+++++.++.|+|||+.+++.+..+.. |...|++++|+++ +++|+++
T Consensus 12 ~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~ 91 (366)
T 3k26_A 12 SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVA 91 (366)
T ss_dssp EEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEE
T ss_pred EeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEe
Confidence 456799999999999984 55677777788999999998887777664 4578999999998 6799999
Q ss_pred eCCCcEEEEeCCCCceeeeecCCCCCeEEEEEec-CCCEEEEEECCCcEEEEECCCCeeEEEe---cccCCceEEEEEcC
Q 005096 205 DDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCR-TDLKFCSCSDDTTVKVWDFARCQEERSL---TGHGWDVKSVDWHP 280 (715)
Q Consensus 205 s~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp-d~~~Las~s~Dg~V~iwdl~~~~~~~~l---~~~~~~I~si~~sp 280 (715)
+.||.|+|||+.+++.+..+..|...|.+++|++ ++++|++++.|+.|++||+++++.+..+ ..|...|.+++|++
T Consensus 92 ~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 171 (366)
T 3k26_A 92 GSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDL 171 (366)
T ss_dssp ETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECT
T ss_pred cCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECC
Confidence 9999999999999999999999999999999999 8999999999999999999999988888 67999999999999
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceeEEec----------------------------cCCCceEEEEEcCCCCEEEEEEC
Q 005096 281 TKSLLVSGGKDSLVKLWDAKSGRELCSFH----------------------------GHKNMVLCVKWNQNGNWVLTASK 332 (715)
Q Consensus 281 dg~~L~sgs~Dg~I~iwDl~s~~~~~~~~----------------------------~~~~~I~sl~~spdg~~Lasgs~ 332 (715)
++++|++++.|+.|++||+++++.+..+. .|...|.+++|+ +++|++++.
T Consensus 172 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~ 249 (366)
T 3k26_A 172 LGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSC 249 (366)
T ss_dssp TSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECS
T ss_pred CCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEec
Confidence 99999999999999999999876544333 388999999998 789999999
Q ss_pred CCeEEEEECCCCe--------------EEEEeecCCCCeEEEEEccCC--CCEEEEEeCCCcEEEEEcCCCCc---eEEE
Q 005096 333 DQIIKLYDIRAMK--------------ELESFRGHRKDVTALAWHPFH--EEYFVSGSLDGSIFHWLVGHETP---QVEI 393 (715)
Q Consensus 333 dg~I~iwDl~t~~--------------~~~~~~~h~~~V~~l~~sp~~--~~~l~sgs~DG~I~iwd~~~~~~---~~~~ 393 (715)
|+.|++||+++++ .+..+..|...|++++|++ + +.+|++++.||.|++||+++... ....
T Consensus 250 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 328 (366)
T 3k26_A 250 ENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSM-DFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTT 328 (366)
T ss_dssp SSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEE-CTTSSEEEEECTTSCEEEEECCSSSGGGCEEEE
T ss_pred CCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcC-CCCCcEEEEEecCCcEEEEECCCCCCccccceE
Confidence 9999999998764 3788889999999999999 6 89999999999999999988753 3334
Q ss_pred eecc--CCCEEEEEEcCCCCEEEEEECCCeEEEEecC
Q 005096 394 HNVH--DNTVWDLAWHPIGYLLCSGSNDHTTKFWCRN 428 (715)
Q Consensus 394 ~~~h--~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~ 428 (715)
+..| ...|++++|++++++|++++.||.|+|||+.
T Consensus 329 ~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 329 LTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp ECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred EcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 4555 6899999999999999999999999999985
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-38 Score=348.11 Aligned_cols=284 Identities=18% Similarity=0.326 Sum_probs=259.9
Q ss_pred CCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCce
Q 005096 141 NKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNV 220 (715)
Q Consensus 141 ~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~ 220 (715)
.+|.+.|++++|++++++|++++.||.|+||| .+++.+..+..|...|.+++|++++++|++++.|+.|++||+.+++.
T Consensus 105 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 183 (425)
T 1r5m_A 105 GKTTNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTV 183 (425)
T ss_dssp ---CBCEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEE
T ss_pred cCCCCceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcE
Confidence 45788999999999999999999999999999 67788899999999999999999999999999999999999999998
Q ss_pred eeeecCCCCC---------------eEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEE
Q 005096 221 KANKSAHKES---------------VRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLL 285 (715)
Q Consensus 221 ~~~~~~h~~~---------------I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L 285 (715)
+..+..+... +.+++|+++ ..+++++.|+.|++||+++.+.+..+..|...|.+++|++++++|
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 262 (425)
T 1r5m_A 184 MQHFELKETGGSSINAENHSGDGSLGVDVEWVDD-DKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLL 262 (425)
T ss_dssp EEEECCC---------------CCCBSCCEEEET-TEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEE
T ss_pred EEEeeccccCccceeeccccCCcceeeEEEEcCC-CEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEE
Confidence 8888777776 999999987 468899999999999999999988999999999999999999999
Q ss_pred EEEeCCCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccC
Q 005096 286 VSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPF 365 (715)
Q Consensus 286 ~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~ 365 (715)
++++.|+.|++||+++++.+..+..|...|.+++|++++ +|++++.|+.|++||+++++.+..+..|...|.+++|++
T Consensus 263 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~- 340 (425)
T 1r5m_A 263 LSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQ- 340 (425)
T ss_dssp EEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECT-
T ss_pred EEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcC-
Confidence 999999999999999999999999899999999999999 999999999999999999999999999999999999999
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCC-------------------ceEEEeeccCC--CEEEEEEcCCCCEEEEEECCCeEEE
Q 005096 366 HEEYFVSGSLDGSIFHWLVGHET-------------------PQVEIHNVHDN--TVWDLAWHPIGYLLCSGSNDHTTKF 424 (715)
Q Consensus 366 ~~~~l~sgs~DG~I~iwd~~~~~-------------------~~~~~~~~h~~--~V~~l~~spdg~~L~sgs~Dg~I~i 424 (715)
++.+|++++.||.|++||+++.. .....+..|.. .|++++|++++++|++++.||.|++
T Consensus 341 ~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i 420 (425)
T 1r5m_A 341 DGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSV 420 (425)
T ss_dssp TSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEE
T ss_pred CCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEE
Confidence 88999999999999999997665 13455556765 9999999999999999999999999
Q ss_pred EecC
Q 005096 425 WCRN 428 (715)
Q Consensus 425 Wdl~ 428 (715)
|+++
T Consensus 421 w~~~ 424 (425)
T 1r5m_A 421 VAIP 424 (425)
T ss_dssp EECC
T ss_pred Eeec
Confidence 9985
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-40 Score=359.72 Aligned_cols=289 Identities=16% Similarity=0.324 Sum_probs=257.3
Q ss_pred CCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCC----CceEEEEeccCCCEEEEEEcCC-CCEEEEEeCCCcEEEEeCC
Q 005096 142 KNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQS----FNFEMILQAHDHAIRSMVWSHN-DNWMVSGDDGGAIKYWQNN 216 (715)
Q Consensus 142 ~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~----~~~~~~l~~h~~~V~~l~~spd-g~~L~tgs~dg~I~iwd~~ 216 (715)
.|...|++++|++++++|++++.||.|+|||+.+ .+.+..+..|...|++++|+++ +++|++++.|+.|++||+.
T Consensus 65 ~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~ 144 (416)
T 2pm9_A 65 QVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMN 144 (416)
T ss_dssp CCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTT
T ss_pred ecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECC
Confidence 4788999999999999999999999999999987 4588889999999999999998 8999999999999999998
Q ss_pred CCc------eee---eecCCCCCeEEEEEecC-CCEEEEEECCCcEEEEECCCCeeEEEeccc------CCceEEEEEcC
Q 005096 217 MNN------VKA---NKSAHKESVRDLSFCRT-DLKFCSCSDDTTVKVWDFARCQEERSLTGH------GWDVKSVDWHP 280 (715)
Q Consensus 217 ~~~------~~~---~~~~h~~~I~~l~~spd-~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~------~~~I~si~~sp 280 (715)
+.+ ... .+..|...|.+++|+++ +.+|++++.|+.|++||+++.+.+..+..+ ...|.+++|++
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 224 (416)
T 2pm9_A 145 KCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHP 224 (416)
T ss_dssp TTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECS
T ss_pred CCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECC
Confidence 876 322 23678899999999998 789999999999999999999998888876 78899999999
Q ss_pred CC-CEEEEEeCCC---cEEEEECCCC-ceeEEec-cCCCceEEEEEcC-CCCEEEEEECCCeEEEEECCCCeEEEEeecC
Q 005096 281 TK-SLLVSGGKDS---LVKLWDAKSG-RELCSFH-GHKNMVLCVKWNQ-NGNWVLTASKDQIIKLYDIRAMKELESFRGH 353 (715)
Q Consensus 281 dg-~~L~sgs~Dg---~I~iwDl~s~-~~~~~~~-~~~~~I~sl~~sp-dg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h 353 (715)
++ .+|++++.|+ .|++||++++ +.+..+. .|...|++++|++ ++++|++++.|+.|+|||+++++.+..+..|
T Consensus 225 ~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~ 304 (416)
T 2pm9_A 225 KNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPAR 304 (416)
T ss_dssp SCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECS
T ss_pred CCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCC
Confidence 97 6899999998 9999999986 5667777 8999999999999 9999999999999999999999999999999
Q ss_pred CCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEE----------------------------------eeccCC
Q 005096 354 RKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEI----------------------------------HNVHDN 399 (715)
Q Consensus 354 ~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~----------------------------------~~~h~~ 399 (715)
...|++++|++++..+|++++.||.|+|||+......... ...|..
T Consensus 305 ~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (416)
T 2pm9_A 305 GNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGE 384 (416)
T ss_dssp SSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCC
T ss_pred CCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccC
Confidence 9999999999954589999999999999999765432211 001566
Q ss_pred CEEEEEEcCCCCEEEEEECCCeEEEEecCCC
Q 005096 400 TVWDLAWHPIGYLLCSGSNDHTTKFWCRNRP 430 (715)
Q Consensus 400 ~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~ 430 (715)
.|++++|++||++|++++.|+.|+||++..+
T Consensus 385 ~~~~~~~s~dg~~la~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 385 PSPAAHWAFGGKLVQITPDGKGVSITNPKIS 415 (416)
T ss_dssp CSCCCEEETTTEEECBCTTSSCBCCBCCCCC
T ss_pred CccceEEeeCCeEEEEeCCCCeEEEEEeccC
Confidence 7889999999999999999999999998753
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-39 Score=341.85 Aligned_cols=295 Identities=18% Similarity=0.309 Sum_probs=251.4
Q ss_pred EEEEecCCCCccEEEEEEcCCCCEEE-EEeC---CCeEEEEeCCCCceEEEE-eccCCCEEEEEEcCC---CCEEEEEeC
Q 005096 135 FVHTSLNKNRCSINRVLWTPTGRRLI-TGSQ---SGEFTLWNGQSFNFEMIL-QAHDHAIRSMVWSHN---DNWMVSGDD 206 (715)
Q Consensus 135 ~~~~~l~~H~~~I~~l~~spdg~~La-tgs~---dg~I~Iwd~~~~~~~~~l-~~h~~~V~~l~~spd---g~~L~tgs~ 206 (715)
++...+.+|...|++++|+++++.|+ +++. ||.|+|||+.+++..... ..|...|.+++|+++ +++|++++.
T Consensus 9 ~~~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~ 88 (357)
T 3i2n_A 9 IIAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDF 88 (357)
T ss_dssp EEEEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEET
T ss_pred HhhhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecC
Confidence 44556678999999999999997655 5555 899999999998776554 378999999999998 699999999
Q ss_pred CCcEEEEeCCCCc-eeeeecCCCCCeEEEEE------ecCCCEEEEEECCCcEEEEECCCCe-eEEEecccCC----ceE
Q 005096 207 GGAIKYWQNNMNN-VKANKSAHKESVRDLSF------CRTDLKFCSCSDDTTVKVWDFARCQ-EERSLTGHGW----DVK 274 (715)
Q Consensus 207 dg~I~iwd~~~~~-~~~~~~~h~~~I~~l~~------spd~~~Las~s~Dg~V~iwdl~~~~-~~~~l~~~~~----~I~ 274 (715)
||.|++||+.+++ ....+..|...|.+++| ++++++|++++.|+.|++||+++.+ .+..+..+.. .|.
T Consensus 89 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~ 168 (357)
T 3i2n_A 89 GGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCW 168 (357)
T ss_dssp TSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEE
T ss_pred CCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceE
Confidence 9999999999887 78888899999999965 6789999999999999999998876 5666655444 788
Q ss_pred EEE----EcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCceEEEEEcC---CCCEEEEEECCCeEEEEECCCCeEE
Q 005096 275 SVD----WHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQ---NGNWVLTASKDQIIKLYDIRAMKEL 347 (715)
Q Consensus 275 si~----~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~sp---dg~~Lasgs~dg~I~iwDl~t~~~~ 347 (715)
+++ |++++++|++++.|+.|++||+++++.+.. ..+...|.+++|++ ++++|++++.|+.|++||+++++.+
T Consensus 169 ~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 247 (357)
T 3i2n_A 169 TVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPT 247 (357)
T ss_dssp EEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETT
T ss_pred EEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcc
Confidence 888 788999999999999999999999887544 45788999999999 9999999999999999999987765
Q ss_pred EEee-----cCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCc------------------eEEEeeccCCCEEEE
Q 005096 348 ESFR-----GHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETP------------------QVEIHNVHDNTVWDL 404 (715)
Q Consensus 348 ~~~~-----~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~------------------~~~~~~~h~~~V~~l 404 (715)
..+. .|...|++++|++++..+|++++.||.|++||++.... .......|...|+++
T Consensus 248 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~ 327 (357)
T 3i2n_A 248 KGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSL 327 (357)
T ss_dssp TEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEE
T ss_pred cceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEE
Confidence 5554 89999999999994444899999999999999976432 345566789999999
Q ss_pred EEcCCCCEEE-EEECCCeEEEEecCCC
Q 005096 405 AWHPIGYLLC-SGSNDHTTKFWCRNRP 430 (715)
Q Consensus 405 ~~spdg~~L~-sgs~Dg~I~iWdl~~~ 430 (715)
+|++++.+|+ +++.||.|+||++.+.
T Consensus 328 ~~s~~~~~l~~s~~~d~~i~iw~~~~~ 354 (357)
T 3i2n_A 328 DWSPDKRGLCVCSSFDQTVRVLIVTKL 354 (357)
T ss_dssp EECSSSTTEEEEEETTSEEEEEEECC-
T ss_pred EEcCCCCeEEEEecCCCcEEEEECCCc
Confidence 9999999888 8999999999999754
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-38 Score=344.17 Aligned_cols=287 Identities=16% Similarity=0.223 Sum_probs=245.5
Q ss_pred EEEecCCCCccEEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCceEEEEe--ccCCCEEEEEEcC-CCCEEEEEeCCCcEE
Q 005096 136 VHTSLNKNRCSINRVLWTPTG-RRLITGSQSGEFTLWNGQSFNFEMILQ--AHDHAIRSMVWSH-NDNWMVSGDDGGAIK 211 (715)
Q Consensus 136 ~~~~l~~H~~~I~~l~~spdg-~~Latgs~dg~I~Iwd~~~~~~~~~l~--~h~~~V~~l~~sp-dg~~L~tgs~dg~I~ 211 (715)
+...+.+|...|++++|++++ ++|++|+.||.|+|||+.+.+....+. +|...|.+++|++ ++++|++++.|+.|+
T Consensus 65 ~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~ 144 (383)
T 3ei3_B 65 LHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATT 144 (383)
T ss_dssp EEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEE
T ss_pred eEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEE
Confidence 344778999999999999999 999999999999999999988887776 5999999999999 679999999999999
Q ss_pred EEeCCCCceeeeec---CCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCC-EEEE
Q 005096 212 YWQNNMNNVKANKS---AHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKS-LLVS 287 (715)
Q Consensus 212 iwd~~~~~~~~~~~---~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~-~L~s 287 (715)
+||++... ...+. .+...|.+++|++++++|++++.|+.|++||+ +++.+..+..|...|.+++|+++++ +|++
T Consensus 145 iwd~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s 222 (383)
T 3ei3_B 145 LRDFSGSV-IQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRCDWLMAT 222 (383)
T ss_dssp EEETTSCE-EEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSCTTEEEE
T ss_pred EEECCCCc-eEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCCCCEEEE
Confidence 99999644 33333 34478999999999999999999999999999 5678888899999999999999999 9999
Q ss_pred EeCCCcEEEEECCC----CceeEEeccCCCceEEEEEcC-CCCEEEEEECCCeEEEEECCCCeEEEEeecCC--------
Q 005096 288 GGKDSLVKLWDAKS----GRELCSFHGHKNMVLCVKWNQ-NGNWVLTASKDQIIKLYDIRAMKELESFRGHR-------- 354 (715)
Q Consensus 288 gs~Dg~I~iwDl~s----~~~~~~~~~~~~~I~sl~~sp-dg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~-------- 354 (715)
++.|+.|++||+++ ++.+..+ .|...|++++|++ ++++|++++.|+.|+|||+++++.+..+..|.
T Consensus 223 ~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 301 (383)
T 3ei3_B 223 SSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLT 301 (383)
T ss_dssp EETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSC
T ss_pred EeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccccccccccccccccc
Confidence 99999999999997 5566666 5899999999999 99999999999999999999988777766443
Q ss_pred ---------CCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeec-cCCCEEEEEEcCCCCEEEEEECCCeEEE
Q 005096 355 ---------KDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNV-HDNTVWDLAWHPIGYLLCSGSNDHTTKF 424 (715)
Q Consensus 355 ---------~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~-h~~~V~~l~~spdg~~L~sgs~Dg~I~i 424 (715)
..+..++|++ ++.+ +++.|+.|+|||+.+...+..+... |...+.+++|++++++|++++ |+.|+|
T Consensus 302 ~~~~~~~p~~~~~~~~~s~-dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~i 377 (383)
T 3ei3_B 302 PIKATWHPMYDLIVAGRYP-DDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILI 377 (383)
T ss_dssp CCCCEECSSSSEEEEECBC-CTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEE
T ss_pred ceEEeccCCCCceEEEecC-Cccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEE
Confidence 2334455555 3333 6678999999999888766555432 467788889999999999997 999999
Q ss_pred EecCC
Q 005096 425 WCRNR 429 (715)
Q Consensus 425 Wdl~~ 429 (715)
||++.
T Consensus 378 w~~~~ 382 (383)
T 3ei3_B 378 WNRED 382 (383)
T ss_dssp EECC-
T ss_pred EecCC
Confidence 99864
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-37 Score=326.65 Aligned_cols=286 Identities=19% Similarity=0.301 Sum_probs=257.0
Q ss_pred EEEEecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 005096 135 FVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQ 214 (715)
Q Consensus 135 ~~~~~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd 214 (715)
.+...+.+|.+.|++++| +++++|++++.||.|+|||+.+.+....+..|...|.+++|++++++|++++.|+.|++|+
T Consensus 9 ~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~ 87 (313)
T 3odt_A 9 QLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVP 87 (313)
T ss_dssp EEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred HHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEE
Confidence 345678999999999999 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCC---ceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcC-CCCEEEEEeC
Q 005096 215 NNMN---NVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHP-TKSLLVSGGK 290 (715)
Q Consensus 215 ~~~~---~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~sp-dg~~L~sgs~ 290 (715)
+... +....+..|...|.+++| ++++|++++.|+.|++|| ..+.+..+..|...|.+++|++ ++++|++++.
T Consensus 88 ~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 163 (313)
T 3odt_A 88 LFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASA 163 (313)
T ss_dssp TTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEET
T ss_pred eeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEEC
Confidence 8764 456677889999999999 678999999999999999 6678888889999999999988 8999999999
Q ss_pred CCcEEEEECCCCceeEEecc-CCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCE
Q 005096 291 DSLVKLWDAKSGRELCSFHG-HKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEY 369 (715)
Q Consensus 291 Dg~I~iwDl~s~~~~~~~~~-~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~ 369 (715)
|+.|++|| ..+.+..+.. +...|.+++|++++. |++++.|+.|++||+++++.+..+..|...|++++|++ ++ .
T Consensus 164 d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~-~~-~ 238 (313)
T 3odt_A 164 DKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLP-NG-D 238 (313)
T ss_dssp TSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECT-TS-C
T ss_pred CCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEec-CC-C
Confidence 99999999 4556667766 889999999999988 99999999999999999999999999999999999999 44 5
Q ss_pred EEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCCCCC
Q 005096 370 FVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGD 432 (715)
Q Consensus 370 l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~~ 432 (715)
|++++.||.|++||+++...... ...|...|++++|+++++ |++++.||.|++|+++....
T Consensus 239 l~~~~~dg~v~iwd~~~~~~~~~-~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~ 299 (313)
T 3odt_A 239 IVSCGEDRTVRIWSKENGSLKQV-ITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRW 299 (313)
T ss_dssp EEEEETTSEEEEECTTTCCEEEE-EECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGGC
T ss_pred EEEEecCCEEEEEECCCCceeEE-EeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCce
Confidence 88999999999999988765544 456888999999999998 66799999999999976443
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-38 Score=335.21 Aligned_cols=286 Identities=16% Similarity=0.277 Sum_probs=251.9
Q ss_pred CCCCCcccchhhhhcccccccceEeeehhhheeeEEEEEeccCCCccccccCchhhhcCccceeecCCCCCceeeeEEEE
Q 005096 59 PPYDAHGDSFAAKRMRKLTQRRAVDYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSFAAKFVHT 138 (715)
Q Consensus 59 ~~~~~h~~~~~~~r~~~~~~~~~~~~~~~~~~~~~irvW~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 138 (715)
..+.+|...+.+..+.. ...++.+...+++|++|+....+ ...
T Consensus 49 ~~l~gH~~~v~~~~~s~-----d~~~l~s~s~Dg~v~iWd~~~~~--------------------------------~~~ 91 (340)
T 1got_B 49 RTLRGHLAKIYAMHWGT-----DSRLLLSASQDGKLIIWDSYTTN--------------------------------KVH 91 (340)
T ss_dssp EEECCCSSCEEEEEECT-----TSSEEEEEETTTEEEEEETTTCC--------------------------------EEE
T ss_pred eeecCCCCceEEEEECC-----CCCEEEEEeCCCcEEEEECCCCC--------------------------------cce
Confidence 34566766665544432 23466677788999999864322 112
Q ss_pred ecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC----ceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 005096 139 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSF----NFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQ 214 (715)
Q Consensus 139 ~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~----~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd 214 (715)
.+..|...|.+++|++++++|++|+.|+.|+|||+.+. +....+.+|...|.++.|++++ .|++++.|+.|++||
T Consensus 92 ~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~s~d~~i~~wd 170 (340)
T 1got_B 92 AIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN-QIVTSSGDTTCALWD 170 (340)
T ss_dssp EEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETT-EEEEEETTSCEEEEE
T ss_pred EeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCC-cEEEEECCCcEEEEE
Confidence 35578899999999999999999999999999998875 4567788999999999999776 588999999999999
Q ss_pred CCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcE
Q 005096 215 NNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLV 294 (715)
Q Consensus 215 ~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I 294 (715)
+++++.+..+..|...|.+++|++++++|++++.|++|++||+++++.+..+.+|...|++++|++++++|++++.|++|
T Consensus 171 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v 250 (340)
T 1got_B 171 IETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATC 250 (340)
T ss_dssp TTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred CCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCCCceeEEecc--CCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEE
Q 005096 295 KLWDAKSGRELCSFHG--HKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVS 372 (715)
Q Consensus 295 ~iwDl~s~~~~~~~~~--~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~s 372 (715)
+|||+++++.+..+.. +...|++++|++++++|++|+.|+.|+|||+.+++.+..+.+|...|.+++|++ ++.+|++
T Consensus 251 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~-dg~~l~s 329 (340)
T 1got_B 251 RLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTD-DGMAVAT 329 (340)
T ss_dssp EEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECT-TSSCEEE
T ss_pred EEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcC-CCCEEEE
Confidence 9999999888777652 234799999999999999999999999999999999999999999999999999 8899999
Q ss_pred EeCCCcEEEEE
Q 005096 373 GSLDGSIFHWL 383 (715)
Q Consensus 373 gs~DG~I~iwd 383 (715)
|+.|+.|+|||
T Consensus 330 ~s~D~~i~iWd 340 (340)
T 1got_B 330 GSWDSFLKIWN 340 (340)
T ss_dssp EETTSCEEEEC
T ss_pred EcCCccEEecC
Confidence 99999999996
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-37 Score=341.97 Aligned_cols=283 Identities=12% Similarity=0.172 Sum_probs=247.8
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeee
Q 005096 145 CSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANK 224 (715)
Q Consensus 145 ~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~ 224 (715)
..+....|++++++|++++.||.|+|||+.+++....+..|...|++++|++++++|++++.|+.|++||+.+++....+
T Consensus 98 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~ 177 (420)
T 3vl1_A 98 DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTL 177 (420)
T ss_dssp CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEE
T ss_pred CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEE
Confidence 34555678999999999999999999999999998888899999999999999999999999999999999999988899
Q ss_pred cCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecc---cC---------------------CceEEEEEcC
Q 005096 225 SAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTG---HG---------------------WDVKSVDWHP 280 (715)
Q Consensus 225 ~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~---~~---------------------~~I~si~~sp 280 (715)
..|...|.+++|++++++|++++.|++|++||+++++.+..+.. +. ..+.+++|++
T Consensus 178 ~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 257 (420)
T 3vl1_A 178 IGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGT 257 (420)
T ss_dssp ECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSC
T ss_pred cCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcC
Confidence 99999999999999999999999999999999999998888864 23 3444555678
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceeEEec-cCCCceEEEEEcCCCC-EEEEEECCCeEEEEECCCCeE-EEEeec-CCCC
Q 005096 281 TKSLLVSGGKDSLVKLWDAKSGRELCSFH-GHKNMVLCVKWNQNGN-WVLTASKDQIIKLYDIRAMKE-LESFRG-HRKD 356 (715)
Q Consensus 281 dg~~L~sgs~Dg~I~iwDl~s~~~~~~~~-~~~~~I~sl~~spdg~-~Lasgs~dg~I~iwDl~t~~~-~~~~~~-h~~~ 356 (715)
++++|++++.|+.|++||+++++.+..+. .|...|++++|+++++ +|++++.||.|++||+++++. +..+.. +...
T Consensus 258 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 337 (420)
T 3vl1_A 258 YGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTP 337 (420)
T ss_dssp TTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSC
T ss_pred CCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCC
Confidence 99999999999999999999998877764 4788999999999998 999999999999999998754 677776 6677
Q ss_pred eEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCc--------eEEEeeccCCCEEEEEEcCCCC---EEEEEECCCeEEEE
Q 005096 357 VTALAWHPFHEEYFVSGSLDGSIFHWLVGHETP--------QVEIHNVHDNTVWDLAWHPIGY---LLCSGSNDHTTKFW 425 (715)
Q Consensus 357 V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~--------~~~~~~~h~~~V~~l~~spdg~---~L~sgs~Dg~I~iW 425 (715)
|.++.+. ++.+|++++.|+.|++||+..... .......|.+.|.+++|++++. .|++++.+|.+.+|
T Consensus 338 v~~~~~~--~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~ 415 (420)
T 3vl1_A 338 INNVYFA--AGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALY 415 (420)
T ss_dssp EEEEEEE--TTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEE
T ss_pred ceEEEeC--CCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEE
Confidence 8888665 578999999999999999976321 1234456888999999999998 78888889999999
Q ss_pred ecCC
Q 005096 426 CRNR 429 (715)
Q Consensus 426 dl~~ 429 (715)
+++.
T Consensus 416 ~~~~ 419 (420)
T 3vl1_A 416 NLSN 419 (420)
T ss_dssp ESCC
T ss_pred eccC
Confidence 9864
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-37 Score=326.32 Aligned_cols=254 Identities=20% Similarity=0.370 Sum_probs=231.9
Q ss_pred CceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEE
Q 005096 176 FNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVW 255 (715)
Q Consensus 176 ~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iw 255 (715)
.+..+++.+|.+.|++++|++++++|++++.||.|+|||++++..+..+..|...|.+++|++++++|++++.|++|++|
T Consensus 3 l~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vw 82 (304)
T 2ynn_A 3 LDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVF 82 (304)
T ss_dssp CCCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEE
T ss_pred ceeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEE
Confidence 34677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC-ceeEEeccCCCceEEEEEcC-CCCEEEEEECC
Q 005096 256 DFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSG-RELCSFHGHKNMVLCVKWNQ-NGNWVLTASKD 333 (715)
Q Consensus 256 dl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~-~~~~~~~~~~~~I~sl~~sp-dg~~Lasgs~d 333 (715)
|+++++.+..+.+|...|++++|++++++|++++.|++|+|||++++ .....+.+|...|.+++|++ ++.+|++++.|
T Consensus 83 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D 162 (304)
T 2ynn_A 83 NYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLD 162 (304)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETT
T ss_pred ECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCC
Confidence 99999999999999999999999999999999999999999999987 44567889999999999999 67899999999
Q ss_pred CeEEEEECCCCeEEEEee-cCCCCeEEEEEccC-CCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCC
Q 005096 334 QIIKLYDIRAMKELESFR-GHRKDVTALAWHPF-HEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGY 411 (715)
Q Consensus 334 g~I~iwDl~t~~~~~~~~-~h~~~V~~l~~sp~-~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~ 411 (715)
+.|+|||+++.+....+. .+...|..+.|++. ++.+|++++.|++|+|||+++.... ..+.+|...|++++|++++.
T Consensus 163 ~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~-~~~~~h~~~v~~~~~~p~~~ 241 (304)
T 2ynn_A 163 RTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCV-ATLEGHMSNVSFAVFHPTLP 241 (304)
T ss_dssp SEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEE-EEEECCSSCEEEEEECSSSS
T ss_pred CeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccc-eeeCCCCCCEEEEEECCCCC
Confidence 999999998877666554 56688999999874 5679999999999999999887654 44557999999999999999
Q ss_pred EEEEEECCCeEEEEecCCC
Q 005096 412 LLCSGSNDHTTKFWCRNRP 430 (715)
Q Consensus 412 ~L~sgs~Dg~I~iWdl~~~ 430 (715)
+|++++.||+|+|||+...
T Consensus 242 ~l~s~s~Dg~i~iWd~~~~ 260 (304)
T 2ynn_A 242 IIISGSEDGTLKIWNSSTY 260 (304)
T ss_dssp EEEEEETTSCEEEEETTTC
T ss_pred EEEEEcCCCeEEEEECCCC
Confidence 9999999999999998654
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-37 Score=335.07 Aligned_cols=245 Identities=21% Similarity=0.358 Sum_probs=217.6
Q ss_pred CCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEE----EeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 005096 142 KNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMI----LQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNM 217 (715)
Q Consensus 142 ~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~----l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~ 217 (715)
.|...|++++|++++ .|++|+.||+|+|||+++++.+.. +.+|.+.|++|+|++++++|++|+.|++|+|||+++
T Consensus 80 ~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~ 158 (344)
T 4gqb_B 80 QTEAGVADLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQ 158 (344)
T ss_dssp EESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred ccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCC
Confidence 366789999999985 788999999999999998775443 458999999999999999999999999999999999
Q ss_pred CceeeeecCCCCCeEEEEEecCC-CEEEEEECCCcEEEEECCCCeeEEEec--ccCCceEEEEEcCC-CCEEEEEeCCCc
Q 005096 218 NNVKANKSAHKESVRDLSFCRTD-LKFCSCSDDTTVKVWDFARCQEERSLT--GHGWDVKSVDWHPT-KSLLVSGGKDSL 293 (715)
Q Consensus 218 ~~~~~~~~~h~~~I~~l~~spd~-~~Las~s~Dg~V~iwdl~~~~~~~~l~--~~~~~I~si~~spd-g~~L~sgs~Dg~ 293 (715)
++.+..+.+|...|.+++|++++ .+|++++.|++|+|||+++++....+. .+...+.+++|+++ +++|++|+.|+.
T Consensus 159 ~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~ 238 (344)
T 4gqb_B 159 QVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGT 238 (344)
T ss_dssp TEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSE
T ss_pred CcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCc
Confidence 99999999999999999999987 578999999999999999988887764 35567899999985 568899999999
Q ss_pred EEEEECCCCceeEEeccCCCceEEEEEcCCC-CEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEE
Q 005096 294 VKLWDAKSGRELCSFHGHKNMVLCVKWNQNG-NWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVS 372 (715)
Q Consensus 294 I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg-~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~s 372 (715)
|+|||+++++++..+.+|...|++++|++++ ++|++++.|++|+|||+++++.+ .+.+|...|++|+|+|++..+|++
T Consensus 239 v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~-~~~~H~~~V~~v~~sp~~~~llas 317 (344)
T 4gqb_B 239 VSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELF-RSQAHRDFVRDATWSPLNHSLLTT 317 (344)
T ss_dssp EEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEE-EECCCSSCEEEEEECSSSTTEEEE
T ss_pred EEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEE-EEcCCCCCEEEEEEeCCCCeEEEE
Confidence 9999999999999999999999999999987 57999999999999999988755 578899999999999977788999
Q ss_pred EeCCCcEEEEEcCCCC
Q 005096 373 GSLDGSIFHWLVGHET 388 (715)
Q Consensus 373 gs~DG~I~iwd~~~~~ 388 (715)
++.|++|++|++.++.
T Consensus 318 ~s~D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 318 VGWDHQVVHHVVPTEP 333 (344)
T ss_dssp EETTSCEEEEECCC--
T ss_pred EcCCCeEEEEECCCCC
Confidence 9999999999997653
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-37 Score=339.49 Aligned_cols=286 Identities=15% Similarity=0.273 Sum_probs=254.6
Q ss_pred CCCCccEEEEEEcCCCC-EEEEEeCCCeEEEEeC----CCCc------eEEEEec----------cCCCEEEEEEcCCCC
Q 005096 141 NKNRCSINRVLWTPTGR-RLITGSQSGEFTLWNG----QSFN------FEMILQA----------HDHAIRSMVWSHNDN 199 (715)
Q Consensus 141 ~~H~~~I~~l~~spdg~-~Latgs~dg~I~Iwd~----~~~~------~~~~l~~----------h~~~V~~l~~spdg~ 199 (715)
..|.+.|++++|+++++ +||+++.||.|+|||+ .+++ ....+.. |...|++++|+++++
T Consensus 42 ~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 121 (425)
T 1r5m_A 42 IVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGN 121 (425)
T ss_dssp EEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSS
T ss_pred eeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCC
Confidence 45678999999999999 9999999999999999 8877 4555554 678999999999999
Q ss_pred EEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCc-------
Q 005096 200 WMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWD------- 272 (715)
Q Consensus 200 ~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~------- 272 (715)
+|++++.||.|+||| .+++....+..|...|.+++|++++++|++++.|+.|++||+.+++.+..+..+...
T Consensus 122 ~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 200 (425)
T 1r5m_A 122 SIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAE 200 (425)
T ss_dssp EEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC----------
T ss_pred EEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeec
Confidence 999999999999999 667778888899999999999999999999999999999999999999888877766
Q ss_pred --------eEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCC
Q 005096 273 --------VKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAM 344 (715)
Q Consensus 273 --------I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~ 344 (715)
+.+++|+++ ..+++++.|+.|++||+++++.+..+..|...|.+++|++++++|++++.|+.|++||++++
T Consensus 201 ~~~~~~~~~~~~~~~~~-~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~ 279 (425)
T 1r5m_A 201 NHSGDGSLGVDVEWVDD-DKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNG 279 (425)
T ss_dssp -----CCCBSCCEEEET-TEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSB
T ss_pred cccCCcceeeEEEEcCC-CEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCC
Confidence 999999987 46888999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEE
Q 005096 345 KELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKF 424 (715)
Q Consensus 345 ~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~i 424 (715)
+.+..+..|...|.+++|++ ++ +|++++.|+.|++||+++..... ....|...|++++|++++.+|++++.||.|++
T Consensus 280 ~~~~~~~~~~~~i~~~~~~~-~~-~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i 356 (425)
T 1r5m_A 280 NSQNCFYGHSQSIVSASWVG-DD-KVISCSMDGSVRLWSLKQNTLLA-LSIVDGVPIFAGRISQDGQKYAVAFMDGQVNV 356 (425)
T ss_dssp SCSEEECCCSSCEEEEEEET-TT-EEEEEETTSEEEEEETTTTEEEE-EEECTTCCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred ccceEecCCCccEEEEEECC-CC-EEEEEeCCCcEEEEECCCCcEeE-ecccCCccEEEEEEcCCCCEEEEEECCCeEEE
Confidence 99999999999999999999 55 99999999999999998776544 44468889999999999999999999999999
Q ss_pred EecCCCC
Q 005096 425 WCRNRPG 431 (715)
Q Consensus 425 Wdl~~~~ 431 (715)
|++....
T Consensus 357 ~~~~~~~ 363 (425)
T 1r5m_A 357 YDLKKLN 363 (425)
T ss_dssp EECHHHH
T ss_pred EECCCCc
Confidence 9996543
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-38 Score=344.05 Aligned_cols=285 Identities=17% Similarity=0.248 Sum_probs=248.5
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeec
Q 005096 146 SINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKS 225 (715)
Q Consensus 146 ~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~ 225 (715)
.+++++|++++++|++++.||.|++||+.+.+....+..| ..+....|++++++|++++.|+.|+|||+++++....+.
T Consensus 58 ~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 136 (420)
T 3vl1_A 58 AGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQ 136 (420)
T ss_dssp CCTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETT
T ss_pred cccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecc
Confidence 3458999999999999999999999999987766666555 445555789999999999999999999999999888888
Q ss_pred CCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCcee
Q 005096 226 AHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGREL 305 (715)
Q Consensus 226 ~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~ 305 (715)
.|...|.+++|++++++|++++.|++|++||+++++.+..+.+|...|.+++|++++++|++++.|+.|++||+++++.+
T Consensus 137 ~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~ 216 (420)
T 3vl1_A 137 AHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTI 216 (420)
T ss_dssp SSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEE
T ss_pred cccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCcee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred EEecc---CCCceE---------------------EEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEee-cCCCCeEEE
Q 005096 306 CSFHG---HKNMVL---------------------CVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFR-GHRKDVTAL 360 (715)
Q Consensus 306 ~~~~~---~~~~I~---------------------sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~-~h~~~V~~l 360 (715)
..+.. +...|. +++|++++++|++++.||.|++||+++++.+..+. .|...|+++
T Consensus 217 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~ 296 (420)
T 3vl1_A 217 HTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSL 296 (420)
T ss_dssp EEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEE
T ss_pred EEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeE
Confidence 88864 333444 45557899999999999999999999998877765 478899999
Q ss_pred EEccCCCCEEEEEeCCCcEEEEEcCCCCce-EEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCCCCC
Q 005096 361 AWHPFHEEYFVSGSLDGSIFHWLVGHETPQ-VEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGD 432 (715)
Q Consensus 361 ~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~-~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~~ 432 (715)
+|++++..+|++++.||.|++||+++.... ..+...|...|+++.|. ++.+|++++.|+.|++|++.....
T Consensus 297 ~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~s~~~d~~v~iw~~~~~~~ 368 (420)
T 3vl1_A 297 TVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYFA-AGALFVSSGFDTSIKLDIISDPES 368 (420)
T ss_dssp EECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEEE-TTEEEEEETTTEEEEEEEECCTTC
T ss_pred EEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEeC-CCCEEEEecCCccEEEEeccCCCC
Confidence 999944449999999999999999987664 44444477788888665 788999999999999999977433
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-39 Score=350.69 Aligned_cols=284 Identities=15% Similarity=0.194 Sum_probs=236.6
Q ss_pred CCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC--ceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 005096 141 NKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSF--NFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN 218 (715)
Q Consensus 141 ~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~--~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~ 218 (715)
..+.+.|++++|++++++|++++.|+.|+|||+.++ +.+..+..|...|.+++|++++++|++++.|+.|+|||+.++
T Consensus 8 ~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~ 87 (377)
T 3dwl_C 8 HILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPD 87 (377)
T ss_dssp EECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC-----
T ss_pred ecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCC
Confidence 346779999999999999999999999999999988 778888999999999999999999999999999999999987
Q ss_pred c---eeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCe---eEEEecc-cCCceEEEEEcCCCCEEEEEeCC
Q 005096 219 N---VKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQ---EERSLTG-HGWDVKSVDWHPTKSLLVSGGKD 291 (715)
Q Consensus 219 ~---~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~---~~~~l~~-~~~~I~si~~spdg~~L~sgs~D 291 (715)
+ ....+..|...|.+++|++++++|++++.|+.|++||+++.+ ....+.. |...|.+++|++++++|++++.|
T Consensus 88 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d 167 (377)
T 3dwl_C 88 GTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCAD 167 (377)
T ss_dssp -CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESS
T ss_pred CceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCC
Confidence 6 566677899999999999999999999999999999998876 3677777 99999999999999999999999
Q ss_pred CcEEEEECCC------------------CceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeE----EEE
Q 005096 292 SLVKLWDAKS------------------GRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKE----LES 349 (715)
Q Consensus 292 g~I~iwDl~s------------------~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~----~~~ 349 (715)
+.|++||+++ ++.+..+ .|...|++++|++++++|++++.|+.|+|||+++++. +..
T Consensus 168 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 246 (377)
T 3dwl_C 168 RKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALIT 246 (377)
T ss_dssp SCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCC
T ss_pred CEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEe
Confidence 9999999852 4455556 7899999999999999999999999999999999887 888
Q ss_pred eecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCC--------------------------------------ceE
Q 005096 350 FRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHET--------------------------------------PQV 391 (715)
Q Consensus 350 ~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~--------------------------------------~~~ 391 (715)
+..|...|.+++|++ ++.+|++++.++.+ +|+..... ...
T Consensus 247 ~~~~~~~v~~~~~s~-~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (377)
T 3dwl_C 247 VKLSQLPLRSLLWAN-ESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTF 324 (377)
T ss_dssp EECSSSCEEEEEEEE-TTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-------------
T ss_pred ecCCCCceEEEEEcC-CCCEEEEEcCCcEE-EEEeCCCceEEEeeecccccccccccccccccccccccccccccccccc
Confidence 899999999999999 78888888766655 66654211 000
Q ss_pred E-------------EeeccCCCEEEEEEcCCC-C---EEEEEECCCeEEEEec
Q 005096 392 E-------------IHNVHDNTVWDLAWHPIG-Y---LLCSGSNDHTTKFWCR 427 (715)
Q Consensus 392 ~-------------~~~~h~~~V~~l~~spdg-~---~L~sgs~Dg~I~iWdl 427 (715)
. +...|.+.|+++++.++. . .|+|++.||.|+|||+
T Consensus 325 ~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 325 RNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp ------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred cchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 0 112388999999976543 3 6999999999999985
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-36 Score=348.16 Aligned_cols=344 Identities=16% Similarity=0.249 Sum_probs=270.7
Q ss_pred EeeehhhheeeEEEEEeccCC------CccccccCchhhhcCccceeecCCCCCceee---------------eEEEEec
Q 005096 82 VDYTSTVVRYMQIRMWQRDSR------DRTVLQATPAAAIDMLPTVAYTDNPSTSFAA---------------KFVHTSL 140 (715)
Q Consensus 82 ~~~~~~~~~~~~irvW~~~~~------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~---------------~~~~~~l 140 (715)
..++.+...++.|++|+.... +..... ........+..+.+.......+.. .-....+
T Consensus 78 ~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~~~~~~~~ 156 (615)
T 1pgu_A 78 SQYLCSGDESGKVIVWGWTFDKESNSVEVNVKS-EFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEV 156 (615)
T ss_dssp CCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEE-EEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEEC
T ss_pred CCEEEEecCCCEEEEEeCCCCcccccccccccc-hhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEECCCcceee
Confidence 345666667889999998533 111111 111122233334444333221111 1134567
Q ss_pred CCCCccEEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCceEEEEeccCC---CEEEEEEcCC-CCEEEEEeCCCcEEEEeC
Q 005096 141 NKNRCSINRVLWTPTGR-RLITGSQSGEFTLWNGQSFNFEMILQAHDH---AIRSMVWSHN-DNWMVSGDDGGAIKYWQN 215 (715)
Q Consensus 141 ~~H~~~I~~l~~spdg~-~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~---~V~~l~~spd-g~~L~tgs~dg~I~iwd~ 215 (715)
.+|...|++++|+++++ +|++++.|+.|+|||+.+++.+..+..|.. .|.+++|+++ +++|++++.|+.|++||+
T Consensus 157 ~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~ 236 (615)
T 1pgu_A 157 SGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDG 236 (615)
T ss_dssp CSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEET
T ss_pred ecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEEC
Confidence 89999999999999998 899999999999999999999999999999 9999999999 999999999999999999
Q ss_pred CCCceeeee-c---CCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecc-----------------------
Q 005096 216 NMNNVKANK-S---AHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTG----------------------- 268 (715)
Q Consensus 216 ~~~~~~~~~-~---~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~----------------------- 268 (715)
.+++.+..+ . .|...|.+++|+ ++++|++++.|+.|++||+++++.+..+..
T Consensus 237 ~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 315 (615)
T 1pgu_A 237 KSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISL 315 (615)
T ss_dssp TTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEE
T ss_pred CCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEE
Confidence 999988888 6 899999999999 999999999999999999987655443322
Q ss_pred ----------------------cCCceE---------------------------------EEEEcCC------------
Q 005096 269 ----------------------HGWDVK---------------------------------SVDWHPT------------ 281 (715)
Q Consensus 269 ----------------------~~~~I~---------------------------------si~~spd------------ 281 (715)
|...|. +++| ++
T Consensus 316 ~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~-~~~~~l~~~~~d~~ 394 (615)
T 1pgu_A 316 SLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDN-SKAQEYSSISWDDT 394 (615)
T ss_dssp ETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEEC-CSTTCCEEEETTTE
T ss_pred ECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEE-CCCcEEEEEeCCCC
Confidence 222222 2222 11
Q ss_pred -------------------------------------------------------------CCEEEEEeC-CCcEEEEEC
Q 005096 282 -------------------------------------------------------------KSLLVSGGK-DSLVKLWDA 299 (715)
Q Consensus 282 -------------------------------------------------------------g~~L~sgs~-Dg~I~iwDl 299 (715)
+++|++++. |+.|++||+
T Consensus 395 i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~ 474 (615)
T 1pgu_A 395 LKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKL 474 (615)
T ss_dssp EEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEET
T ss_pred EEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEEC
Confidence 334444444 555566665
Q ss_pred CCCcee-EEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeec-CCCCeEEEEEccC---------CCC
Q 005096 300 KSGREL-CSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRG-HRKDVTALAWHPF---------HEE 368 (715)
Q Consensus 300 ~s~~~~-~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~-h~~~V~~l~~sp~---------~~~ 368 (715)
.+++.. ..+..|...|++++|++++++|++++.|+.|+|||+++++.+..+.. |...|++++|++. ++.
T Consensus 475 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~ 554 (615)
T 1pgu_A 475 SDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEED 554 (615)
T ss_dssp TEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCC
T ss_pred CCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCccccccccccCCC
Confidence 554433 44566888999999999999999999999999999999999999988 9999999999983 688
Q ss_pred EEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCC
Q 005096 369 YFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNR 429 (715)
Q Consensus 369 ~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~ 429 (715)
+|++++.||.|++||+.+.......+..|...|++++|++++. |++++.||.|++|+++.
T Consensus 555 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 555 LVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADACIKRWNVVL 614 (615)
T ss_dssp EEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE-EEEEETTSCEEEEEEC-
T ss_pred EEEEEcCCCcEEEEECCCCceechhhhcCccceEEEEEcCCCC-eEEecCCceEEEEeeec
Confidence 9999999999999999988666777888999999999999999 99999999999999864
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-36 Score=324.01 Aligned_cols=291 Identities=18% Similarity=0.329 Sum_probs=249.2
Q ss_pred CCCcccchhhhhcccccccceEeeehhhheeeEEEEEeccCCCccccccCchhhhcCccceeecCCCCCceeeeEEEEec
Q 005096 61 YDAHGDSFAAKRMRKLTQRRAVDYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSFAAKFVHTSL 140 (715)
Q Consensus 61 ~~~h~~~~~~~r~~~~~~~~~~~~~~~~~~~~~irvW~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l 140 (715)
+.+|...+....+... ...++.+...+.+|++|+....+.. .......+
T Consensus 13 l~gH~~~V~~l~~~~~----~~~~l~s~s~D~~v~~W~~~~~~~~---------------------------~~~~~~~~ 61 (319)
T 3frx_A 13 LEGHNGWVTSLATSAG----QPNLLLSASRDKTLISWKLTGDDQK---------------------------FGVPVRSF 61 (319)
T ss_dssp ECCCSSCEEEEEECSS----CTTEEEEEETTSEEEEEEEEEETTE---------------------------EEEEEEEE
T ss_pred EccccceEEEEEccCC----CccEEEEecCCccEEEecCCCCCcc---------------------------ccccceEE
Confidence 5567666655443221 1235667788899999987532210 01123467
Q ss_pred CCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCce
Q 005096 141 NKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNV 220 (715)
Q Consensus 141 ~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~ 220 (715)
.+|...|++++|++++++|++|+.|++|+|||+.+++.+..+.+|...|.+++|++++++|++++.|++|+|||++. ..
T Consensus 62 ~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~-~~ 140 (319)
T 3frx_A 62 KGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG-QC 140 (319)
T ss_dssp ECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTS-CE
T ss_pred eCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC-Ce
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999974 56
Q ss_pred eeeecCCCCCeEEEEEecC------CCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcE
Q 005096 221 KANKSAHKESVRDLSFCRT------DLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLV 294 (715)
Q Consensus 221 ~~~~~~h~~~I~~l~~spd------~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I 294 (715)
+..+..|...|.+++|+++ +..|++++.|++|++||+++.+....+.+|...|.+++|++++++|++++.|+.|
T Consensus 141 ~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i 220 (319)
T 3frx_A 141 LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEI 220 (319)
T ss_dssp EEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEE
T ss_pred EEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeE
Confidence 6677889999999999885 4589999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeec--------CCCCeEEEEEccCC
Q 005096 295 KLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRG--------HRKDVTALAWHPFH 366 (715)
Q Consensus 295 ~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~--------h~~~V~~l~~sp~~ 366 (715)
+|||+++++.+..+.. ...|.+++|++++.+|++++. +.|++|++.....+..+.. +...+.+++|++ +
T Consensus 221 ~iwd~~~~~~~~~~~~-~~~v~~~~~sp~~~~la~~~~-~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-d 297 (319)
T 3frx_A 221 MLWNLAAKKAMYTLSA-QDEVFSLAFSPNRYWLAAATA-TGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSA-D 297 (319)
T ss_dssp EEEETTTTEEEEEEEC-CSCEEEEEECSSSSEEEEEET-TEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECT-T
T ss_pred EEEECCCCcEEEEecC-CCcEEEEEEcCCCCEEEEEcC-CCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECC-C
Confidence 9999999999888874 567999999999999998875 5699999998877776642 456799999999 8
Q ss_pred CCEEEEEeCCCcEEEEEcCC
Q 005096 367 EEYFVSGSLDGSIFHWLVGH 386 (715)
Q Consensus 367 ~~~l~sgs~DG~I~iwd~~~ 386 (715)
+++|++|+.||.|+|||+.+
T Consensus 298 g~~l~sg~~Dg~i~vWd~~t 317 (319)
T 3frx_A 298 GQTLFAGYTDNVIRVWQVMT 317 (319)
T ss_dssp SSEEEEEETTSCEEEEEEEE
T ss_pred CCEEEEeecCceEEEEEEee
Confidence 99999999999999999864
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-36 Score=334.75 Aligned_cols=279 Identities=21% Similarity=0.367 Sum_probs=258.5
Q ss_pred ecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 005096 139 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN 218 (715)
Q Consensus 139 ~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~ 218 (715)
.+.+|.+.|++++|+ +++|++|+.||+|+|||+.+++.+..+..|...|.+++|+ +++|++++.||.|++||+.++
T Consensus 154 ~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~ 229 (445)
T 2ovr_B 154 TLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETG 229 (445)
T ss_dssp ECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSC
T ss_pred EEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCC
Confidence 567899999999997 6699999999999999999999999999999999999995 678999999999999999999
Q ss_pred ceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005096 219 NVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWD 298 (715)
Q Consensus 219 ~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwD 298 (715)
+....+..|...|.+++| ++++|++++.|+.|++||+++++.+..+..|...|.+++| ++++|++++.|+.|++||
T Consensus 230 ~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d 305 (445)
T 2ovr_B 230 QCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWD 305 (445)
T ss_dssp CEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEE
T ss_pred cEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEE
Confidence 999999999999999999 7889999999999999999999999999999999999999 689999999999999999
Q ss_pred CCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeec---CCCCeEEEEEccCCCCEEEEEeC
Q 005096 299 AKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRG---HRKDVTALAWHPFHEEYFVSGSL 375 (715)
Q Consensus 299 l~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~---h~~~V~~l~~sp~~~~~l~sgs~ 375 (715)
+++++.+..+..|...+.++.++ +++|++++.||.|++||+++++.+..+.. |...|++++|+ +++|++++.
T Consensus 306 ~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~s~~~ 380 (445)
T 2ovr_B 306 VETGNCIHTLTGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN---KNFVITSSD 380 (445)
T ss_dssp TTTCCEEEEECCCCSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC---SSEEEEEET
T ss_pred CCCCCEEEEEcCCcccEEEEEEe--CCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC---CCEEEEEeC
Confidence 99999999999999999998884 67999999999999999999999999986 88899999994 589999999
Q ss_pred CCcEEEEEcCCCCceEEEe----eccCCCEEEEEEcCCCCEEEEEECCCe----EEEEecCCC
Q 005096 376 DGSIFHWLVGHETPQVEIH----NVHDNTVWDLAWHPIGYLLCSGSNDHT----TKFWCRNRP 430 (715)
Q Consensus 376 DG~I~iwd~~~~~~~~~~~----~~h~~~V~~l~~spdg~~L~sgs~Dg~----I~iWdl~~~ 430 (715)
||.|++||+++++....+. ..|.+.|++++|++++.+|++++.||+ |.|||++.+
T Consensus 381 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~~ 443 (445)
T 2ovr_B 381 DGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVD 443 (445)
T ss_dssp TSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCCC
T ss_pred CCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCCC
Confidence 9999999999887666553 357889999999999999999999998 999999764
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-37 Score=343.36 Aligned_cols=290 Identities=13% Similarity=0.196 Sum_probs=245.3
Q ss_pred eEEEEecCCCCccEEEEEEcC-CCCEEEEEeCCCeEEEEeCCC---Cc---eEEEEeccCCCEEEEEEcCCCCEEEEEeC
Q 005096 134 KFVHTSLNKNRCSINRVLWTP-TGRRLITGSQSGEFTLWNGQS---FN---FEMILQAHDHAIRSMVWSHNDNWMVSGDD 206 (715)
Q Consensus 134 ~~~~~~l~~H~~~I~~l~~sp-dg~~Latgs~dg~I~Iwd~~~---~~---~~~~l~~h~~~V~~l~~spdg~~L~tgs~ 206 (715)
+.+.+...+|.+.|++++|++ ++++||+|+.||+|+|||+.+ +. ....+ .|...|++++|++++++|++++.
T Consensus 53 ~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~ 131 (437)
T 3gre_A 53 KLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDAFAVSSK 131 (437)
T ss_dssp CEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSEEEEEET
T ss_pred eEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCEEEEEeC
Confidence 444444489999999999999 999999999999999999766 32 23333 48999999999999999999999
Q ss_pred CCcEEEEeCC---CCceeeeec----------C--CCCCeEEEE--EecCCCEEEEEECCCcEEEEECCCCeeEEEecc-
Q 005096 207 GGAIKYWQNN---MNNVKANKS----------A--HKESVRDLS--FCRTDLKFCSCSDDTTVKVWDFARCQEERSLTG- 268 (715)
Q Consensus 207 dg~I~iwd~~---~~~~~~~~~----------~--h~~~I~~l~--~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~- 268 (715)
||.|+|||++ .++...... . +...+.++. +++++.+|++++.|+.|++||+++++.+..+..
T Consensus 132 dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 211 (437)
T 3gre_A 132 DGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENS 211 (437)
T ss_dssp TSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred CCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccC
Confidence 9999999985 443333222 1 456677777 457889999999999999999999999999988
Q ss_pred -cCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEec-cCCCceEEEEEc----CCCCEEEEEECCCeEEEEECC
Q 005096 269 -HGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFH-GHKNMVLCVKWN----QNGNWVLTASKDQIIKLYDIR 342 (715)
Q Consensus 269 -~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~-~~~~~I~sl~~s----pdg~~Lasgs~dg~I~iwDl~ 342 (715)
|...|++++|++++++|++++.|+.|+|||+++++.+..+. .+...|++++|+ +++.+|++++.|+.|+|||++
T Consensus 212 ~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~ 291 (437)
T 3gre_A 212 PRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFV 291 (437)
T ss_dssp GGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETT
T ss_pred CCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcC
Confidence 88999999999999999999999999999999999988886 678899999665 467899999999999999999
Q ss_pred CCeEEEEeecC--------------------------CCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEee-
Q 005096 343 AMKELESFRGH--------------------------RKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHN- 395 (715)
Q Consensus 343 t~~~~~~~~~h--------------------------~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~- 395 (715)
+++.+..+..| ...|++++|+ ++.+|++++.|+.|++||+.+......+..
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~--~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~ 369 (437)
T 3gre_A 292 KGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS--NDKILLTDEATSSIVMFSLNELSSSKAVISP 369 (437)
T ss_dssp TTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE--TTEEEEEEGGGTEEEEEETTCGGGCEEEECC
T ss_pred CCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC--CceEEEecCCCCeEEEEECCCcccceEEecc
Confidence 99988887744 4457888888 468999999999999999988765544432
Q ss_pred -----------------------------------ccCCCEEEEEEcCC--CCEEEEEECCCeEEEEe
Q 005096 396 -----------------------------------VHDNTVWDLAWHPI--GYLLCSGSNDHTTKFWC 426 (715)
Q Consensus 396 -----------------------------------~h~~~V~~l~~spd--g~~L~sgs~Dg~I~iWd 426 (715)
.|.+.|++++|+++ +.+|++++.||.|+||+
T Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 370 SRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp --CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred cccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 28899999999998 78999999999999995
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-38 Score=347.11 Aligned_cols=289 Identities=18% Similarity=0.231 Sum_probs=239.5
Q ss_pred ecCCCCccEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCceEE--EEeccCCCEEEEEEcC-CCCEEEEEeCCCcEEEEe
Q 005096 139 SLNKNRCSINRVLWTP-TGRRLITGSQSGEFTLWNGQSFNFEM--ILQAHDHAIRSMVWSH-NDNWMVSGDDGGAIKYWQ 214 (715)
Q Consensus 139 ~l~~H~~~I~~l~~sp-dg~~Latgs~dg~I~Iwd~~~~~~~~--~l~~h~~~V~~l~~sp-dg~~L~tgs~dg~I~iwd 214 (715)
....|...|+||+|+| ++++||+|+.||+|+|||+.+.+... .+.+|.+.|++|+|+| ++++|++++.||+|+|||
T Consensus 114 ~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd 193 (435)
T 4e54_B 114 KAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQD 193 (435)
T ss_dssp EEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEE
T ss_pred cCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEee
Confidence 3457889999999998 56799999999999999998766444 4567999999999997 689999999999999999
Q ss_pred CCCCceeeeec--CCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCC-EEEEEeCC
Q 005096 215 NNMNNVKANKS--AHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKS-LLVSGGKD 291 (715)
Q Consensus 215 ~~~~~~~~~~~--~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~-~L~sgs~D 291 (715)
++++....... .+...+.+++|++++++|++++.||.|++||++. +.+..+.+|...|++++|+++++ +|++++.|
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~-~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d 272 (435)
T 4e54_B 194 FKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG-KELWNLRMHKKKVTHVALNPCCDWFLATASVD 272 (435)
T ss_dssp TTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS-CBCCCSBCCSSCEEEEEECTTCSSEEEEEETT
T ss_pred ccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc-ceeEEEecccceEEeeeecCCCceEEEEecCc
Confidence 98775544433 3345678999999999999999999999999864 56777889999999999999876 78899999
Q ss_pred CcEEEEECCCCceeEE---eccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCC------CeEEEEE
Q 005096 292 SLVKLWDAKSGRELCS---FHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRK------DVTALAW 362 (715)
Q Consensus 292 g~I~iwDl~s~~~~~~---~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~------~V~~l~~ 362 (715)
+.|+|||+++.+.... ..+|...|++++|++++++|++++.|+.|+|||+++++....+..|.. .+..+.|
T Consensus 273 ~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (435)
T 4e54_B 273 QTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAW 352 (435)
T ss_dssp SBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEE
T ss_pred ceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEE
Confidence 9999999998765433 356889999999999999999999999999999999988877765543 2345567
Q ss_pred ccCCCCEEEEEe------------CCCcEEEEEcCCCCceEEEeeccCCCEEEE-EEcCCCCEEEEEECCCeEEEEecCC
Q 005096 363 HPFHEEYFVSGS------------LDGSIFHWLVGHETPQVEIHNVHDNTVWDL-AWHPIGYLLCSGSNDHTTKFWCRNR 429 (715)
Q Consensus 363 sp~~~~~l~sgs------------~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l-~~spdg~~L~sgs~Dg~I~iWdl~~ 429 (715)
++ ++.+++++. .++.|++||..++..+..+...|...|.++ +|+++|.+|++|+ |+.|+||+++.
T Consensus 353 ~~-~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~ 430 (435)
T 4e54_B 353 HP-RYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQE 430 (435)
T ss_dssp CS-SSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC-
T ss_pred cC-CCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCc
Confidence 76 445555443 345799999999888777777888889887 6999999999876 88999999865
Q ss_pred C
Q 005096 430 P 430 (715)
Q Consensus 430 ~ 430 (715)
.
T Consensus 431 g 431 (435)
T 4e54_B 431 A 431 (435)
T ss_dssp -
T ss_pred C
Confidence 3
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-36 Score=321.38 Aligned_cols=284 Identities=15% Similarity=0.239 Sum_probs=253.8
Q ss_pred CCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceee
Q 005096 143 NRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKA 222 (715)
Q Consensus 143 H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~ 222 (715)
|.+.|.+++|++||++|+++..++.+.+|+............|...|++++|++++++|++++ ||.|+|||+.++....
T Consensus 8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~ 86 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKS 86 (337)
T ss_dssp EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCS
T ss_pred cCCceeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCcee
Confidence 456799999999999999998888888887766655666668999999999999999999998 9999999998765332
Q ss_pred ee-----cCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCe--eEEEecccCCceEEEEEcCCCCEEEEEeCCCcEE
Q 005096 223 NK-----SAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQ--EERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVK 295 (715)
Q Consensus 223 ~~-----~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~--~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~ 295 (715)
.+ ..|...|.+++|++++++|++++.|+.|++||+++.+ ....+..|...|.+++|++++++|++++.|+.|+
T Consensus 87 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~ 166 (337)
T 1gxr_A 87 PVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIA 166 (337)
T ss_dssp CSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred eeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEE
Confidence 22 2688999999999999999999999999999998876 5667788899999999999999999999999999
Q ss_pred EEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeC
Q 005096 296 LWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSL 375 (715)
Q Consensus 296 iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~ 375 (715)
+||+++++.+..+..|...|.+++|++++++|++++.|+.|++||+++++.+..+. +...+.+++|++ ++++|++++.
T Consensus 167 ~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~v~~~~~s~-~~~~l~~~~~ 244 (337)
T 1gxr_A 167 VWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCP-TGEWLAVGME 244 (337)
T ss_dssp EEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECT-TSSEEEEEET
T ss_pred EEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeec-CCCceEEEEECC-CCCEEEEEcC
Confidence 99999999999999999999999999999999999999999999999999888875 778899999999 8899999999
Q ss_pred CCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCCCC
Q 005096 376 DGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPG 431 (715)
Q Consensus 376 DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~ 431 (715)
|+.|++||+++... .....|...|++++|++++++|++++.||.|++|+++...
T Consensus 245 ~~~i~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~ 298 (337)
T 1gxr_A 245 SSNVEVLHVNKPDK--YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGA 298 (337)
T ss_dssp TSCEEEEETTSSCE--EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred CCcEEEEECCCCCe--EEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCe
Confidence 99999999987654 3445689999999999999999999999999999997644
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-36 Score=328.77 Aligned_cols=286 Identities=18% Similarity=0.301 Sum_probs=250.6
Q ss_pred CCCCcccchhhhhcccccccceEeeehhhheeeEEEEEeccCCCccccccCchhhhcCccceeecCCCCCceeeeEEEEe
Q 005096 60 PYDAHGDSFAAKRMRKLTQRRAVDYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSFAAKFVHTS 139 (715)
Q Consensus 60 ~~~~h~~~~~~~r~~~~~~~~~~~~~~~~~~~~~irvW~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 139 (715)
.+.+|...+.+..+.. ...++.+...+.+|++|+....+ ....
T Consensus 59 ~l~gH~~~V~~~~~s~-----d~~~l~s~s~Dg~v~vWd~~~~~--------------------------------~~~~ 101 (354)
T 2pbi_B 59 TLKGHGNKVLCMDWCK-----DKRRIVSSSQDGKVIVWDSFTTN--------------------------------KEHA 101 (354)
T ss_dssp EEECCSSCEEEEEECT-----TSSEEEEEETTSEEEEEETTTCC--------------------------------EEEE
T ss_pred EecCCCCeEEEEEECC-----CCCEEEEEeCCCeEEEEECCCCC--------------------------------cceE
Confidence 4566766666555433 23456677788999999854322 1123
Q ss_pred cCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC------ceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 005096 140 LNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSF------NFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYW 213 (715)
Q Consensus 140 l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~------~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iw 213 (715)
+..|...|.+++|++++++|++++.|+.|++|++... .....+..|...|.+++|+++++.|++++.|++|+||
T Consensus 102 ~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lw 181 (354)
T 2pbi_B 102 VTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALW 181 (354)
T ss_dssp EECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEE
T ss_pred EecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEE
Confidence 4467888999999999999999999999999997643 3466778899999999999999999999999999999
Q ss_pred eCCCCceeeeecCCCCCeEEEEEec--CCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCC
Q 005096 214 QNNMNNVKANKSAHKESVRDLSFCR--TDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKD 291 (715)
Q Consensus 214 d~~~~~~~~~~~~h~~~I~~l~~sp--d~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~D 291 (715)
|+++++.+..+..|...|.+++|++ ++++|++++.|++|++||+++++.+..+..|...|++++|++++++|++++.|
T Consensus 182 d~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D 261 (354)
T 2pbi_B 182 DVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDD 261 (354)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred eCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCC
Confidence 9999999999999999999999987 46899999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEECCCCceeEEeccC--CCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCE
Q 005096 292 SLVKLWDAKSGRELCSFHGH--KNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEY 369 (715)
Q Consensus 292 g~I~iwDl~s~~~~~~~~~~--~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~ 369 (715)
++|+|||+++++.+..+..+ ...+.+++|++++++|++++.|+.|+|||+.+++.+..+.+|...|++++|++ ++.+
T Consensus 262 ~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~sp-dg~~ 340 (354)
T 2pbi_B 262 ATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSP-DGTA 340 (354)
T ss_dssp SCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECT-TSSC
T ss_pred CeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECC-CCCE
Confidence 99999999998877776533 34789999999999999999999999999999999999999999999999999 8899
Q ss_pred EEEEeCCCcEEEEE
Q 005096 370 FVSGSLDGSIFHWL 383 (715)
Q Consensus 370 l~sgs~DG~I~iwd 383 (715)
|++++.|++|+||+
T Consensus 341 l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 341 FCSGSWDHTLRVWA 354 (354)
T ss_dssp EEEEETTSEEEEEC
T ss_pred EEEEcCCCCEEecC
Confidence 99999999999996
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-38 Score=343.38 Aligned_cols=289 Identities=21% Similarity=0.389 Sum_probs=254.6
Q ss_pred CCccEEEEEEcCCCC-EEEEE----------eCCCeEEEEeCCCCce---EEEEeccCCCEEEEEEcCCCCEEEEEeCCC
Q 005096 143 NRCSINRVLWTPTGR-RLITG----------SQSGEFTLWNGQSFNF---EMILQAHDHAIRSMVWSHNDNWMVSGDDGG 208 (715)
Q Consensus 143 H~~~I~~l~~spdg~-~Latg----------s~dg~I~Iwd~~~~~~---~~~l~~h~~~V~~l~~spdg~~L~tgs~dg 208 (715)
+...|.+++|+|+++ +|+++ +.|+.|+|||+.+.+. +.. ..|...|++++|++++++|++++.||
T Consensus 11 ~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg 89 (416)
T 2pm9_A 11 EFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIAS-LQVDSKFNDLDWSHNNKIIAGALDNG 89 (416)
T ss_dssp EEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCC-CCCSSCEEEEEECSSSSCEEEEESSS
T ss_pred hhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEE-EecCCceEEEEECCCCCeEEEEccCC
Confidence 335688999999987 89999 8899999999998753 333 35889999999999999999999999
Q ss_pred cEEEEeCCC----CceeeeecCCCCCeEEEEEecC-CCEEEEEECCCcEEEEECCCCe------eEEE---ecccCCceE
Q 005096 209 AIKYWQNNM----NNVKANKSAHKESVRDLSFCRT-DLKFCSCSDDTTVKVWDFARCQ------EERS---LTGHGWDVK 274 (715)
Q Consensus 209 ~I~iwd~~~----~~~~~~~~~h~~~I~~l~~spd-~~~Las~s~Dg~V~iwdl~~~~------~~~~---l~~~~~~I~ 274 (715)
.|+|||+.+ .+....+..|...|.+++|+++ +++|++++.|+.|++||+++.+ .... +..|...|.
T Consensus 90 ~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~ 169 (416)
T 2pm9_A 90 SLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVI 169 (416)
T ss_dssp CEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCC
T ss_pred eEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCee
Confidence 999999987 4577788899999999999998 8999999999999999998876 3322 356888999
Q ss_pred EEEEcCC-CCEEEEEeCCCcEEEEECCCCceeEEeccC------CCceEEEEEcCCC-CEEEEEECCC---eEEEEECCC
Q 005096 275 SVDWHPT-KSLLVSGGKDSLVKLWDAKSGRELCSFHGH------KNMVLCVKWNQNG-NWVLTASKDQ---IIKLYDIRA 343 (715)
Q Consensus 275 si~~spd-g~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~------~~~I~sl~~spdg-~~Lasgs~dg---~I~iwDl~t 343 (715)
+++|+++ +.+|++++.|+.|++||+++++.+..+..+ ...|.+++|++++ .+|++++.|+ .|++||+++
T Consensus 170 ~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~ 249 (416)
T 2pm9_A 170 SLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRN 249 (416)
T ss_dssp EEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTS
T ss_pred EEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCC
Confidence 9999999 789999999999999999999998888766 7889999999987 6899999998 999999998
Q ss_pred C-eEEEEee-cCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCC-CEEEEEECCC
Q 005096 344 M-KELESFR-GHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIG-YLLCSGSNDH 420 (715)
Q Consensus 344 ~-~~~~~~~-~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg-~~L~sgs~Dg 420 (715)
+ +.+..+. .|...|++++|++.++.+|++++.||.|++||+++...+. .+..|...|++++|++++ .+|++++.|+
T Consensus 250 ~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~-~~~~~~~~v~~~~~s~~~~~~l~s~~~d~ 328 (416)
T 2pm9_A 250 ANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLS-QFPARGNWCFKTKFAPEAPDLFACASFDN 328 (416)
T ss_dssp TTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEE-EEECSSSCCCCEEECTTCTTEEEECCSSS
T ss_pred CCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccce-eecCCCCceEEEEECCCCCCEEEEEecCC
Confidence 6 6677787 8999999999999788999999999999999998876554 445689999999999998 8999999999
Q ss_pred eEEEEecCCCCCc
Q 005096 421 TTKFWCRNRPGDT 433 (715)
Q Consensus 421 ~I~iWdl~~~~~~ 433 (715)
.|+||++......
T Consensus 329 ~i~iw~~~~~~~~ 341 (416)
T 2pm9_A 329 KIEVQTLQNLTNT 341 (416)
T ss_dssp EEEEEESCCCCCS
T ss_pred cEEEEEccCCCCC
Confidence 9999999765543
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-36 Score=331.74 Aligned_cols=288 Identities=21% Similarity=0.354 Sum_probs=251.9
Q ss_pred ecCCCCcc--EEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEec-cCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005096 139 SLNKNRCS--INRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQA-HDHAIRSMVWSHNDNWMVSGDDGGAIKYWQN 215 (715)
Q Consensus 139 ~l~~H~~~--I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~-h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~ 215 (715)
...+|... +.+++|+. ..|++++.|+.|+|||+.+++....+.. |...|++++|++++++|++++.||.|+|||+
T Consensus 86 ~~~~~~~~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~ 163 (401)
T 4aez_A 86 DAPGIIDDYYLNLLDWSN--LNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDV 163 (401)
T ss_dssp ECTTCCCCTTCBCEEECT--TSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred eCCCCcCCceEEEEeecC--CCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEEC
Confidence 34456554 56677775 4588899999999999999998888776 7889999999999999999999999999999
Q ss_pred CCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECC-CCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcE
Q 005096 216 NMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFA-RCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLV 294 (715)
Q Consensus 216 ~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~-~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I 294 (715)
++++.+..+..|...|.+++| ++++|++++.|+.|++||++ ....+..+..|...|.+++|++++++|++++.|+.|
T Consensus 164 ~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v 241 (401)
T 4aez_A 164 ESQTKLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVV 241 (401)
T ss_dssp TTCCEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred cCCeEEEEecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeE
Confidence 999999999999999999999 56799999999999999998 566778888999999999999999999999999999
Q ss_pred EEEECCCCceeEEeccCCCceEEEEEcCCCC-EEEEEE--CCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEE
Q 005096 295 KLWDAKSGRELCSFHGHKNMVLCVKWNQNGN-WVLTAS--KDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFV 371 (715)
Q Consensus 295 ~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~-~Lasgs--~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~ 371 (715)
++||+++++.+..+..|...|.+++|++++. +|++++ .|+.|++||+++++.+..+. +...|.+++|++ ++.+|+
T Consensus 242 ~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~s~-~~~~l~ 319 (401)
T 4aez_A 242 QIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSLIWSP-HSKEIM 319 (401)
T ss_dssp EEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEECS-SSSEEE
T ss_pred EEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEEEECC-CCCeEE
Confidence 9999999999999999999999999999764 555554 79999999999999988886 667899999999 778887
Q ss_pred EE--eCCCcEEEEEcCCCCceEE-EeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCCCCC
Q 005096 372 SG--SLDGSIFHWLVGHETPQVE-IHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGD 432 (715)
Q Consensus 372 sg--s~DG~I~iwd~~~~~~~~~-~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~~ 432 (715)
++ +.||.|+|||+.+...... ....|...|++++|++++.+|++++.||.|++|++.....
T Consensus 320 ~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~ 383 (401)
T 4aez_A 320 STHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDH 383 (401)
T ss_dssp EEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC---
T ss_pred EEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcc
Confidence 74 4899999999987644333 3457899999999999999999999999999999976443
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-36 Score=326.68 Aligned_cols=281 Identities=20% Similarity=0.371 Sum_probs=233.7
Q ss_pred EeeehhhheeeEEEEEeccCCCccccccCchhhhcCccceeecCCCCCceeeeEEEEecCCCCccEEEEEEcCCCCEEEE
Q 005096 82 VDYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSFAAKFVHTSLNKNRCSINRVLWTPTGRRLIT 161 (715)
Q Consensus 82 ~~~~~~~~~~~~irvW~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~~l~~spdg~~Lat 161 (715)
..++.+...+.+|++|+...... ........+|...|++++|++++++|++
T Consensus 28 g~~las~~~D~~i~iw~~~~~~~-----------------------------~~~~~~~~~h~~~v~~~~~sp~g~~l~s 78 (345)
T 3fm0_A 28 GTLLASCGGDRRIRIWGTEGDSW-----------------------------ICKSVLSEGHQRTVRKVAWSPCGNYLAS 78 (345)
T ss_dssp SSCEEEEETTSCEEEEEEETTEE-----------------------------EEEEEECSSCSSCEEEEEECTTSSEEEE
T ss_pred CCEEEEEcCCCeEEEEEcCCCcc-----------------------------eeeeeeccccCCcEEEEEECCCCCEEEE
Confidence 34566677788999998643210 0011234689999999999999999999
Q ss_pred EeCCCeEEEEeCCCC--ceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc---eeeeecCCCCCeEEEEE
Q 005096 162 GSQSGEFTLWNGQSF--NFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNN---VKANKSAHKESVRDLSF 236 (715)
Q Consensus 162 gs~dg~I~Iwd~~~~--~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~---~~~~~~~h~~~I~~l~~ 236 (715)
|+.|++|+|||+.+. +.+..+.+|...|.+++|++++++|++++.|+.|+|||+.+.. .+..+..|...|.+++|
T Consensus 79 ~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~ 158 (345)
T 3fm0_A 79 ASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVW 158 (345)
T ss_dssp EETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEE
T ss_pred EECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEE
Confidence 999999999998766 4577889999999999999999999999999999999998753 45667889999999999
Q ss_pred ecCCCEEEEEECCCcEEEEECCCCe--eEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC------------
Q 005096 237 CRTDLKFCSCSDDTTVKVWDFARCQ--EERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSG------------ 302 (715)
Q Consensus 237 spd~~~Las~s~Dg~V~iwdl~~~~--~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~------------ 302 (715)
++++++|++++.|++|++||+++.+ ....+.+|...|++++|++++++|++++.|++|+|||+...
T Consensus 159 ~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~ 238 (345)
T 3fm0_A 159 HPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSD 238 (345)
T ss_dssp CSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---
T ss_pred CCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccC
Confidence 9999999999999999999998765 45678899999999999999999999999999999996321
Q ss_pred ---ceeEEecc-CCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCe---------EEEEeecCCCCeEEEEEccCCCCE
Q 005096 303 ---RELCSFHG-HKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMK---------ELESFRGHRKDVTALAWHPFHEEY 369 (715)
Q Consensus 303 ---~~~~~~~~-~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~---------~~~~~~~h~~~V~~l~~sp~~~~~ 369 (715)
+++..+.+ |...|.+++|++++.+|++++.|+.|++||.+... ......+|...|++|+|+|++..+
T Consensus 239 ~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~ 318 (345)
T 3fm0_A 239 PSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGL 318 (345)
T ss_dssp CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTE
T ss_pred CccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceE
Confidence 23344444 78899999999999999999999999999987542 122345799999999999965679
Q ss_pred EEEEeCCCcEEEEEcCCCCceE
Q 005096 370 FVSGSLDGSIFHWLVGHETPQV 391 (715)
Q Consensus 370 l~sgs~DG~I~iwd~~~~~~~~ 391 (715)
|++++.||+|++|++.+.+...
T Consensus 319 laS~s~Dg~v~~W~~~~~~~~~ 340 (345)
T 3fm0_A 319 LASCSDDGEVAFWKYQRPEGLH 340 (345)
T ss_dssp EEEEETTSCEEEEEECC-----
T ss_pred EEEcCCCCcEEEEEecCCCCcc
Confidence 9999999999999998776543
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-37 Score=331.44 Aligned_cols=250 Identities=20% Similarity=0.350 Sum_probs=213.3
Q ss_pred CCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceE----EEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 005096 141 NKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFE----MILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNN 216 (715)
Q Consensus 141 ~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~----~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~ 216 (715)
.+|...|++++|+++++ +++++.||+|+|||+.+++.. ....+|...|++|+|++++++|++++.|+.|+|||++
T Consensus 91 ~~~~~~V~~~~~s~d~~-~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~ 169 (357)
T 4g56_B 91 VQTEAGVTDVAWVSEKG-ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLS 169 (357)
T ss_dssp EECSSCEEEEEEETTTE-EEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETT
T ss_pred CCCCCCEEEEEEcCCCC-EEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECC
Confidence 46888999999999985 667888999999999887643 3345799999999999999999999999999999999
Q ss_pred CCceeeeecCCCCCeEEEEEecCCC-EEEEEECCCcEEEEECCCCeeEEEec--ccCCceEEEEEcCCC-CEEEEEeCCC
Q 005096 217 MNNVKANKSAHKESVRDLSFCRTDL-KFCSCSDDTTVKVWDFARCQEERSLT--GHGWDVKSVDWHPTK-SLLVSGGKDS 292 (715)
Q Consensus 217 ~~~~~~~~~~h~~~I~~l~~spd~~-~Las~s~Dg~V~iwdl~~~~~~~~l~--~~~~~I~si~~spdg-~~L~sgs~Dg 292 (715)
+++.+..+..|...|.+++|++++. +|++++.|++|++||+++++.+..+. .+...+.+++|+|++ .+|++++.|+
T Consensus 170 ~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~ 249 (357)
T 4g56_B 170 QKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETG 249 (357)
T ss_dssp TTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSS
T ss_pred CCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeeccc
Confidence 9999999999999999999999874 78999999999999999887765543 466789999999974 6899999999
Q ss_pred cEEEEECCCCceeEEeccCCCceEEEEEcCCC-CEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEE
Q 005096 293 LVKLWDAKSGRELCSFHGHKNMVLCVKWNQNG-NWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFV 371 (715)
Q Consensus 293 ~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg-~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~ 371 (715)
.|+|||+++++.+..+..|...|++++|++++ ++|++++.|++|+|||+++++.+..+ +|...|++|+|+|.++.+|+
T Consensus 250 ~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~~V~~vafsP~d~~~l~ 328 (357)
T 4g56_B 250 NVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-SHRDFVTGVAWSPLDHSKFT 328 (357)
T ss_dssp CEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CCSSCEEEEEECSSSTTEEE
T ss_pred ceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CCCCCEEEEEEeCCCCCEEE
Confidence 99999999999999999999999999999987 67999999999999999998877665 79999999999987889999
Q ss_pred EEeCCCcEEEEEcCCCCceEE
Q 005096 372 SGSLDGSIFHWLVGHETPQVE 392 (715)
Q Consensus 372 sgs~DG~I~iwd~~~~~~~~~ 392 (715)
+++.||+|++|++........
T Consensus 329 s~s~Dg~v~iW~~~~~~~~~~ 349 (357)
T 4g56_B 329 TVGWDHKVLHHHLPSEGRTEN 349 (357)
T ss_dssp EEETTSCEEEEECC-------
T ss_pred EEcCCCeEEEEECCCCCcccc
Confidence 999999999999976654433
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-36 Score=332.33 Aligned_cols=285 Identities=21% Similarity=0.360 Sum_probs=256.1
Q ss_pred EEecCCCCccE-EEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005096 137 HTSLNKNRCSI-NRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQN 215 (715)
Q Consensus 137 ~~~l~~H~~~I-~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~ 215 (715)
...+.+|...| +++.+ ++++|++|+.||+|+|||+.+++.+..+.+|.+.|.+++|++++ +|++|+.||+|++||+
T Consensus 114 ~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~ 190 (464)
T 3v7d_B 114 RTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDI 190 (464)
T ss_dssp EEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEET
T ss_pred eEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEEC
Confidence 34678898885 66666 56799999999999999999999999999999999999999887 9999999999999999
Q ss_pred CCCceeeeecCCCCCeEEEEEe--cCCCEEEEEECCCcEEEEECCCCee-----------------------EEEecccC
Q 005096 216 NMNNVKANKSAHKESVRDLSFC--RTDLKFCSCSDDTTVKVWDFARCQE-----------------------ERSLTGHG 270 (715)
Q Consensus 216 ~~~~~~~~~~~h~~~I~~l~~s--pd~~~Las~s~Dg~V~iwdl~~~~~-----------------------~~~l~~~~ 270 (715)
++++....+..|...|.+++|+ +++++|++++.|++|++||+.+... +..+.+|.
T Consensus 191 ~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (464)
T 3v7d_B 191 KKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHM 270 (464)
T ss_dssp TTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCS
T ss_pred CCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCcc
Confidence 9999999999999999999998 4778999999999999999977642 44567788
Q ss_pred CceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEe
Q 005096 271 WDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESF 350 (715)
Q Consensus 271 ~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~ 350 (715)
..|.++. +++++|++++.|+.|++||+++++.+..+.+|...|.+++|++++++|++++.|+.|++||+++++.+..+
T Consensus 271 ~~v~~~~--~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~ 348 (464)
T 3v7d_B 271 ASVRTVS--GHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTL 348 (464)
T ss_dssp SCEEEEE--EETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred ceEEEEc--CCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEE
Confidence 8888774 56899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCCC
Q 005096 351 RGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRP 430 (715)
Q Consensus 351 ~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~ 430 (715)
..|...|.+++|+ +.+|++++.||.|++||+++....... .+...+..++|++++.+|++++ ||.|++||++..
T Consensus 349 ~~h~~~v~~~~~~---~~~l~s~s~dg~v~vwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g 422 (464)
T 3v7d_B 349 QGHTALVGLLRLS---DKFLVSAAADGSIRGWDANDYSRKFSY--HHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSG 422 (464)
T ss_dssp CCCSSCEEEEEEC---SSEEEEEETTSEEEEEETTTCCEEEEE--ECTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTC
T ss_pred eCCCCcEEEEEEc---CCEEEEEeCCCcEEEEECCCCceeeee--cCCCCccEEEEEeCCCEEEEec-CCeEEEEECCCC
Confidence 9999999999996 589999999999999999887654444 3566788899999999999998 999999999764
Q ss_pred CC
Q 005096 431 GD 432 (715)
Q Consensus 431 ~~ 432 (715)
..
T Consensus 423 ~~ 424 (464)
T 3v7d_B 423 KL 424 (464)
T ss_dssp CE
T ss_pred cE
Confidence 43
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-36 Score=323.41 Aligned_cols=297 Identities=17% Similarity=0.272 Sum_probs=240.2
Q ss_pred CCCcccchhhhhccccccc-ceEeeehhhheeeEEEEEeccCCCccccccCchhhhcCccceeecCCCCCceeeeEEEEe
Q 005096 61 YDAHGDSFAAKRMRKLTQR-RAVDYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSFAAKFVHTS 139 (715)
Q Consensus 61 ~~~h~~~~~~~r~~~~~~~-~~~~~~~~~~~~~~irvW~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 139 (715)
+.+|.+.+....+...... ....++.+...+.+|++|+....+.... .......
T Consensus 17 l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~-------------------------~~~~~~~ 71 (343)
T 2xzm_R 17 LEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGY-------------------------FGIPHKA 71 (343)
T ss_dssp EECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSB-------------------------SEEEEEE
T ss_pred eccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccc-------------------------cccccch
Confidence 4566666655444211111 1345677788899999999764331100 0112346
Q ss_pred cCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc
Q 005096 140 LNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNN 219 (715)
Q Consensus 140 l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~ 219 (715)
+.+|...|++++|++++.+|++++.|++|+|||+.+++.+..+.+|...|.+++|++++++|++++.|+.|+|||+....
T Consensus 72 l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~ 151 (343)
T 2xzm_R 72 LTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGEC 151 (343)
T ss_dssp ECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCE
T ss_pred hccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999998443
Q ss_pred eeeee--cCCCCCeEEEEEecCC----------CEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEE
Q 005096 220 VKANK--SAHKESVRDLSFCRTD----------LKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVS 287 (715)
Q Consensus 220 ~~~~~--~~h~~~I~~l~~spd~----------~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~s 287 (715)
..... ..|...|.+++|++++ .+|++++.|++|++||. +.+....+..|...|.+++|++++++|++
T Consensus 152 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~s~~g~~l~s 230 (343)
T 2xzm_R 152 KFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNGKYIAT 230 (343)
T ss_dssp EEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred eeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCccccceEEEECCCCCEEEE
Confidence 32222 3688899999999986 78999999999999994 56777788899999999999999999999
Q ss_pred EeCCCcEEEEECCCC-ceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEE--Eee-----------cC
Q 005096 288 GGKDSLVKLWDAKSG-RELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELE--SFR-----------GH 353 (715)
Q Consensus 288 gs~Dg~I~iwDl~s~-~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~--~~~-----------~h 353 (715)
++.|+.|+|||+++. .....+. +...|.+++|++++.+|+++ .|+.|+|||+.+++... .+. +|
T Consensus 231 gs~dg~v~iwd~~~~~~~~~~~~-~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (343)
T 2xzm_R 231 GGKDKKLLIWDILNLTYPQREFD-AGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGK 308 (343)
T ss_dssp EETTCEEEEEESSCCSSCSEEEE-CSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCS
T ss_pred EcCCCeEEEEECCCCcccceeec-CCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCC
Confidence 999999999999543 3444443 45679999999999887765 57889999998776543 433 57
Q ss_pred CCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCC
Q 005096 354 RKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGH 386 (715)
Q Consensus 354 ~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~ 386 (715)
...|.+++|++ ++.+|++|+.||.|++|++++
T Consensus 309 ~~~v~~~~~sp-~g~~l~sg~~Dg~v~~w~~~~ 340 (343)
T 2xzm_R 309 NPQCTSLAWNA-LGKKLFAGFTDGVIRTFSFET 340 (343)
T ss_dssp CCCEEEEEECS-SSCCEEEEETTSEEEEEEEEE
T ss_pred CCceEEEEECC-CCCeEEEecCCceEEEEEEEc
Confidence 78899999999 889999999999999999854
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-35 Score=323.53 Aligned_cols=283 Identities=24% Similarity=0.429 Sum_probs=243.6
Q ss_pred CCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEe--ccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCce
Q 005096 143 NRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQ--AHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNV 220 (715)
Q Consensus 143 H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~--~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~ 220 (715)
..-.++.|+||.++ +|++|. |++|+|||..+++.+..+. .|...|++|+|++++++|++|+.||.|+|||+++++.
T Consensus 104 ~d~y~~~l~wS~~n-~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~ 181 (420)
T 4gga_A 104 NDYYLNLVDWSSGN-VLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKR 181 (420)
T ss_dssp CCTTCBCEEECTTS-EEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE
T ss_pred ccccceeEEECCCC-EEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcE
Confidence 34467889999764 777775 8999999999999887765 5677899999999999999999999999999999999
Q ss_pred eeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCC-CeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 005096 221 KANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFAR-CQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDA 299 (715)
Q Consensus 221 ~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~-~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl 299 (715)
+..+..|...|.++++ ++.+|++++.|+.+++||... ...+..+.+|...+..+.|++++++|++++.|+.|+|||+
T Consensus 182 ~~~~~~h~~~v~~~s~--~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~ 259 (420)
T 4gga_A 182 LRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPS 259 (420)
T ss_dssp EEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEES
T ss_pred EEEEeCCCCceEEEee--CCCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEee
Confidence 9999999999998887 568999999999999999875 4456778899999999999999999999999999999999
Q ss_pred CCCc----eeEEeccCCCceEEEEEcCCC-CEEEEE--ECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEE
Q 005096 300 KSGR----ELCSFHGHKNMVLCVKWNQNG-NWVLTA--SKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVS 372 (715)
Q Consensus 300 ~s~~----~~~~~~~~~~~I~sl~~spdg-~~Lasg--s~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~s 372 (715)
.+++ .+.....|...|.+++|++++ ++|+++ +.|++|+|||+++++.+..+..+ ..+.++.|++ +++.|++
T Consensus 260 ~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~-~~v~~~~~~~-~~~~lv~ 337 (420)
T 4gga_A 260 APGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSP-HYKELIS 337 (420)
T ss_dssp SCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECS-SCEEEEEEET-TTTEEEE
T ss_pred ccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccc-cceeeeeecC-CCCeEEE
Confidence 8765 345667789999999999965 555554 47999999999999999888754 5788999999 5555555
Q ss_pred Ee--CCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCCCCC
Q 005096 373 GS--LDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGD 432 (715)
Q Consensus 373 gs--~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~~ 432 (715)
++ .|+.|+|||+.+...+. .+.+|.+.|++++|++|+.+|+||+.|++|+|||+.+...
T Consensus 338 ~sg~~d~~I~iwd~~~~~~v~-~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~ 398 (420)
T 4gga_A 338 GHGFAQNQLVIWKYPTMAKVA-ELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDP 398 (420)
T ss_dssp EECTTTCCEEEEETTTCCEEE-EECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSSC
T ss_pred EEecCCCEEEEEECCCCcEEE-EEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCc
Confidence 44 78999999998876654 4557999999999999999999999999999999965443
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-35 Score=313.05 Aligned_cols=287 Identities=21% Similarity=0.401 Sum_probs=249.7
Q ss_pred CCCcccchhhhhcccccccceEeeehhhheeeEEEEEeccCCCccccccCchhhhcCccceeecCCCCCceeeeEEEEec
Q 005096 61 YDAHGDSFAAKRMRKLTQRRAVDYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSFAAKFVHTSL 140 (715)
Q Consensus 61 ~~~h~~~~~~~r~~~~~~~~~~~~~~~~~~~~~irvW~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l 140 (715)
+.+|...+....+.. ...++.+...+..|++|+....+ ....+
T Consensus 19 ~~gh~~~v~~~~~s~-----~~~~l~s~~~dg~i~iw~~~~~~--------------------------------~~~~~ 61 (312)
T 4ery_A 19 LAGHTKAVSSVKFSP-----NGEWLASSSADKLIKIWGAYDGK--------------------------------FEKTI 61 (312)
T ss_dssp ECCCSSCEEEEEECT-----TSSEEEEEETTSCEEEEETTTCC--------------------------------EEEEE
T ss_pred EcccCCcEEEEEECC-----CCCEEEEeeCCCeEEEEeCCCcc--------------------------------cchhh
Confidence 456666665554433 23456666778899999764321 12246
Q ss_pred CCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCce
Q 005096 141 NKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNV 220 (715)
Q Consensus 141 ~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~ 220 (715)
.+|...|++++|++++++|++++.|+.|+|||+++++.+..+..|...|.+++|++++++|++++.|+.|++||+++++.
T Consensus 62 ~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~ 141 (312)
T 4ery_A 62 SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC 141 (312)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCE
T ss_pred ccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEE
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEec-ccCCceEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 005096 221 KANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLT-GHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDA 299 (715)
Q Consensus 221 ~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~-~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl 299 (715)
...+..|...|.+++|++++++|++++.|+.|++||+++++.+..+. .+...+.+++|++++++|++++.|+.|++||+
T Consensus 142 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~ 221 (312)
T 4ery_A 142 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 221 (312)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEET
T ss_pred EEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEEC
Confidence 99999999999999999999999999999999999999988777664 45667999999999999999999999999999
Q ss_pred CCCceeEEeccCCCceE---EEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEe--
Q 005096 300 KSGRELCSFHGHKNMVL---CVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGS-- 374 (715)
Q Consensus 300 ~s~~~~~~~~~~~~~I~---sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs-- 374 (715)
++++.+..+..|...+. .....+++++|++++.||.|++||+++++.+..+.+|...|.+++|++ ++.+|++++
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p-~~~~l~s~~~~ 300 (312)
T 4ery_A 222 SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHP-TENIIASAALE 300 (312)
T ss_dssp TTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECS-SSSEEEEEECT
T ss_pred CCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecC-cCCceEEEEcc
Confidence 99999999887765433 223346789999999999999999999999999999999999999999 888999887
Q ss_pred CCCcEEEEEcC
Q 005096 375 LDGSIFHWLVG 385 (715)
Q Consensus 375 ~DG~I~iwd~~ 385 (715)
.|+.|++|+.+
T Consensus 301 ~d~~i~~W~~d 311 (312)
T 4ery_A 301 NDKTIKLWKSD 311 (312)
T ss_dssp TTCCEEEEECC
T ss_pred CCccEEEecCC
Confidence 69999999874
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-35 Score=330.12 Aligned_cols=281 Identities=17% Similarity=0.297 Sum_probs=250.2
Q ss_pred ecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEc--CCCCEEEEEeCCCcEEEEeCC
Q 005096 139 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWS--HNDNWMVSGDDGGAIKYWQNN 216 (715)
Q Consensus 139 ~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~s--pdg~~L~tgs~dg~I~iwd~~ 216 (715)
.+.+|.+.|++++|++++ +|++|+.||+|+|||+++++.+..+..|...|.+++|+ +++++|++++.|+.|++||+.
T Consensus 157 ~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~ 235 (464)
T 3v7d_B 157 QLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLP 235 (464)
T ss_dssp EECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECC
T ss_pred EEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCC
Confidence 567899999999999988 99999999999999999999999999999999999998 577899999999999999998
Q ss_pred CCce-----------------------eeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCce
Q 005096 217 MNNV-----------------------KANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDV 273 (715)
Q Consensus 217 ~~~~-----------------------~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I 273 (715)
+... ...+..|...|.++ ++++++|++++.|+.|++||+++++.+..+.+|...|
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v 313 (464)
T 3v7d_B 236 KESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRI 313 (464)
T ss_dssp CCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCE
T ss_pred CCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCE
Confidence 7642 44566788888877 5678999999999999999999999999999999999
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecC
Q 005096 274 KSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGH 353 (715)
Q Consensus 274 ~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h 353 (715)
.+++|++++++|++++.|+.|++||+++++.+..+.+|...|.+++|+ +++|++++.||.|++||+++.+....+. +
T Consensus 314 ~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~-~ 390 (464)
T 3v7d_B 314 YSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYH-H 390 (464)
T ss_dssp EEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEE-C
T ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeec-C
Confidence 999999999999999999999999999999999999999999999997 6899999999999999999987766664 6
Q ss_pred CCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecC
Q 005096 354 RKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRN 428 (715)
Q Consensus 354 ~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~ 428 (715)
...+..++|++ ++.+|++++ ||.|++||+++++.+......|...|++++|+ +..++++++.||.+.+|-++
T Consensus 391 ~~~~~~~~~~~-~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~-~~~l~~~~~~~g~~~i~~ld 462 (464)
T 3v7d_B 391 TNLSAITTFYV-SDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFK-GKTLVAAVEKDGQSFLEILD 462 (464)
T ss_dssp TTCCCEEEEEE-CSSEEEEEE-TTEEEEEETTTCCEEESCTTTTCSEEEEEEEE-TTEEEEEEEETTEEEEEEEE
T ss_pred CCCccEEEEEe-CCCEEEEec-CCeEEEEECCCCcEEehhhccCCCcEEEEEec-CCEEEEEEEeCCeEEEEEee
Confidence 67788889998 788999988 89999999999887666566789999999998 45566677778877776543
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-36 Score=321.05 Aligned_cols=273 Identities=19% Similarity=0.377 Sum_probs=220.6
Q ss_pred eehhhheeeEEEEEeccCCCccccccCchhhhcCccceeecCCCCCceeeeEEEEe-cCCCCccEEEEEEcCCCCEEEEE
Q 005096 84 YTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSFAAKFVHTS-LNKNRCSINRVLWTPTGRRLITG 162 (715)
Q Consensus 84 ~~~~~~~~~~irvW~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-l~~H~~~I~~l~~spdg~~Latg 162 (715)
++.+...+.+|++|+....+. +.+... ..+|...|++|+|++++++|+++
T Consensus 26 ~las~~~D~~i~lw~~~~~~~-----------------------------~~~~~~~~~~h~~~v~~v~~sp~~~~las~ 76 (330)
T 2hes_X 26 ILATGSTDRKIKLVSVKYDDF-----------------------------TLIDVLDETAHKKAIRSVAWRPHTSLLAAG 76 (330)
T ss_dssp EEEEEESSSCEEEEECSSSCC-----------------------------EEEEEECTTCCCSCEEEEEECTTSSEEEEE
T ss_pred EEEEEcCCCEEEEEEecCCCe-----------------------------EEEEEEecCCccCCEEEEEECCCCCEEEEE
Confidence 666777889999998753210 011111 23499999999999999999999
Q ss_pred eCCCeEEEEeCCC-------CceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC----ceeeeecCCCCCe
Q 005096 163 SQSGEFTLWNGQS-------FNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN----NVKANKSAHKESV 231 (715)
Q Consensus 163 s~dg~I~Iwd~~~-------~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~----~~~~~~~~h~~~I 231 (715)
+.|++|+|||++. .+.+..+.+|...|.+++|++++++|++|+.|++|+|||+... +.+..+..|...|
T Consensus 77 s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v 156 (330)
T 2hes_X 77 SFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDV 156 (330)
T ss_dssp ETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCE
T ss_pred eCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCce
Confidence 9999999999853 3567788999999999999999999999999999999999432 4566778999999
Q ss_pred EEEEEecCCCEEEEEECCCcEEEEECCCC--eeEEEecccCCceEEEEEcCC--CCEEEEEeCCCcEEEEECCCC-----
Q 005096 232 RDLSFCRTDLKFCSCSDDTTVKVWDFARC--QEERSLTGHGWDVKSVDWHPT--KSLLVSGGKDSLVKLWDAKSG----- 302 (715)
Q Consensus 232 ~~l~~spd~~~Las~s~Dg~V~iwdl~~~--~~~~~l~~~~~~I~si~~spd--g~~L~sgs~Dg~I~iwDl~s~----- 302 (715)
.+++|++++.+|++++.|++|++||+.+. +.+..+.+|...|.+++|+++ +.+|++++.|++|+|||++++
T Consensus 157 ~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~ 236 (330)
T 2hes_X 157 KHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQ 236 (330)
T ss_dssp EEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSC
T ss_pred EEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCcccc
Confidence 99999999999999999999999998765 577888999999999999998 678999999999999998754
Q ss_pred ---ceeEEecc-CCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCe--EEEE-eecCCC-CeEEEEEccC-CCCEEEEE
Q 005096 303 ---RELCSFHG-HKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMK--ELES-FRGHRK-DVTALAWHPF-HEEYFVSG 373 (715)
Q Consensus 303 ---~~~~~~~~-~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~--~~~~-~~~h~~-~V~~l~~sp~-~~~~l~sg 373 (715)
.++..+.. |...|.+++|++++ +|++++.||.|+|||..+++ .+.. +..|.. .|.+++|++. ++.+|+++
T Consensus 237 ~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~ 315 (330)
T 2hes_X 237 QEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATG 315 (330)
T ss_dssp EEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEE
T ss_pred ceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEe
Confidence 33444544 88899999999654 79999999999999998774 3333 356776 8999999985 57899999
Q ss_pred eCCCcEEEEEcCC
Q 005096 374 SLDGSIFHWLVGH 386 (715)
Q Consensus 374 s~DG~I~iwd~~~ 386 (715)
+.||+|+|||++.
T Consensus 316 s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 316 GDDGIVNFWSLEK 328 (330)
T ss_dssp ETTSEEEEEEC--
T ss_pred cCCCcEEEEEecc
Confidence 9999999999854
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-36 Score=332.46 Aligned_cols=278 Identities=22% Similarity=0.460 Sum_probs=250.5
Q ss_pred cCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc
Q 005096 140 LNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNN 219 (715)
Q Consensus 140 l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~ 219 (715)
..+|...|+|++| ++++|++|+.||.|+|||+.+++....+.+|...|.+++| ++++|++|+.||.|++||+++++
T Consensus 129 ~~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~ 204 (435)
T 1p22_A 129 RSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGE 204 (435)
T ss_dssp CCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCC
T ss_pred ccCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCc
Confidence 4567888999988 7899999999999999999999999999999999999999 78999999999999999999999
Q ss_pred eeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeE---EEecccCCceEEEEEcCCCCEEEEEeCCCcEEE
Q 005096 220 VKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEE---RSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKL 296 (715)
Q Consensus 220 ~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~---~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~i 296 (715)
.+..+..|...|.+++|+ +.+|++++.|+.|++||+++.+.. ..+.+|...|.+++| ++++|++++.|+.|++
T Consensus 205 ~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~v 280 (435)
T 1p22_A 205 MLNTLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKV 280 (435)
T ss_dssp EEEEECCCCSCEEEEECC--TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEE
T ss_pred EEEEEcCCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEE
Confidence 999999999999999996 569999999999999999877655 677889999999999 6889999999999999
Q ss_pred EECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCC
Q 005096 297 WDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLD 376 (715)
Q Consensus 297 wDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~D 376 (715)
||+++++.+..+..|...|.+++| ++++|++++.|+.|++||+++++.+..+..|...|.+++| ++.+|++|+.|
T Consensus 281 wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~---~~~~l~sg~~d 355 (435)
T 1p22_A 281 WNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF---DNKRIVSGAYD 355 (435)
T ss_dssp EETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC---CSSEEEEEETT
T ss_pred EECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe---cCCEEEEEeCC
Confidence 999999999999999999999999 4789999999999999999999999999999999999999 67899999999
Q ss_pred CcEEEEEcCCCCc--------eEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCCCCC
Q 005096 377 GSIFHWLVGHETP--------QVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGD 432 (715)
Q Consensus 377 G~I~iwd~~~~~~--------~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~~ 432 (715)
|.|++||+.+... .......|.+.|++++| ++.+|++++.||.|++||+.....
T Consensus 356 g~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~~~ 417 (435)
T 1p22_A 356 GKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLNDPA 417 (435)
T ss_dssp SCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC------
T ss_pred CcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCCCCC
Confidence 9999999865431 45566789999999999 788899999999999999976543
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-36 Score=333.36 Aligned_cols=282 Identities=15% Similarity=0.305 Sum_probs=237.6
Q ss_pred CCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc-----------eEEEEeccC------------CCEEEEEEcCCC
Q 005096 142 KNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFN-----------FEMILQAHD------------HAIRSMVWSHND 198 (715)
Q Consensus 142 ~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~-----------~~~~l~~h~------------~~V~~l~~spdg 198 (715)
.|.+.|++|+|++++++||+|+.||.|+|||+.+.+ ....+.+|. ..|++++|++++
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~ 105 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK 105 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence 467899999999999999999999999999998876 578888998 889999999998
Q ss_pred --CEEEEEeCCCcEEEEeCCCCcee----------------------------------------eeecCCCCCeEEEEE
Q 005096 199 --NWMVSGDDGGAIKYWQNNMNNVK----------------------------------------ANKSAHKESVRDLSF 236 (715)
Q Consensus 199 --~~L~tgs~dg~I~iwd~~~~~~~----------------------------------------~~~~~h~~~I~~l~~ 236 (715)
.+|++++.|+.|+|||+.++... .....|...|.+++|
T Consensus 106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 185 (447)
T 3dw8_B 106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI 185 (447)
T ss_dssp SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence 79999999999999998764332 123679999999999
Q ss_pred ecCCCEEEEEECCCcEEEEECCCC-eeEE-------EecccCCceEEEEEcCCC-CEEEEEeCCCcEEEEECCCCce---
Q 005096 237 CRTDLKFCSCSDDTTVKVWDFARC-QEER-------SLTGHGWDVKSVDWHPTK-SLLVSGGKDSLVKLWDAKSGRE--- 304 (715)
Q Consensus 237 spd~~~Las~s~Dg~V~iwdl~~~-~~~~-------~l~~~~~~I~si~~spdg-~~L~sgs~Dg~I~iwDl~s~~~--- 304 (715)
++++++|+++ .|+.|++||+++. +.+. .+..|...|++++|++++ ++|++++.|+.|+|||+++++.
T Consensus 186 ~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 264 (447)
T 3dw8_B 186 NSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDR 264 (447)
T ss_dssp CTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCT
T ss_pred cCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccc
Confidence 9999999998 8999999999843 3333 255788999999999998 9999999999999999999886
Q ss_pred -eEEeccCCC------------ceEEEEEcCCCCEEEEEECCCeEEEEECCC-CeEEEEeecCCCC--------------
Q 005096 305 -LCSFHGHKN------------MVLCVKWNQNGNWVLTASKDQIIKLYDIRA-MKELESFRGHRKD-------------- 356 (715)
Q Consensus 305 -~~~~~~~~~------------~I~sl~~spdg~~Lasgs~dg~I~iwDl~t-~~~~~~~~~h~~~-------------- 356 (715)
+..+..+.. .|.+++|++++++|++++. +.|+|||+++ ++.+..+..|...
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~ 343 (447)
T 3dw8_B 265 HSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIF 343 (447)
T ss_dssp TCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGG
T ss_pred eeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccccc
Confidence 778887775 8999999999999999998 9999999997 8888888877532
Q ss_pred -eEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEe-------------------------------eccCCCEEEE
Q 005096 357 -VTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIH-------------------------------NVHDNTVWDL 404 (715)
Q Consensus 357 -V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~-------------------------------~~h~~~V~~l 404 (715)
+..++|++ ++.+|++++.||.|+|||+.++....... ..+...|.++
T Consensus 344 ~~~~~~~s~-~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 422 (447)
T 3dw8_B 344 DKFECCWNG-SDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHT 422 (447)
T ss_dssp CCCCEEECT-TSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEE
T ss_pred cceEEEECC-CCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccccccccccccCCceeEE
Confidence 33499999 88999999999999999998876532111 0234578999
Q ss_pred EEcCCCCEEEEEECCCeEEEEec
Q 005096 405 AWHPIGYLLCSGSNDHTTKFWCR 427 (715)
Q Consensus 405 ~~spdg~~L~sgs~Dg~I~iWdl 427 (715)
+|+|++.+|++++.|+ +++|.-
T Consensus 423 ~~~p~~~~la~~~~~~-~~~~~~ 444 (447)
T 3dw8_B 423 AWHPKENIIAVATTNN-LYIFQD 444 (447)
T ss_dssp EECSSSSEEEEECSSC-EEEEEC
T ss_pred EECCCCCEEEEEecce-eeeecc
Confidence 9999999999998776 777754
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-36 Score=326.07 Aligned_cols=245 Identities=27% Similarity=0.403 Sum_probs=222.4
Q ss_pred CCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCce
Q 005096 141 NKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNV 220 (715)
Q Consensus 141 ~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~ 220 (715)
..+...|++++|++|+++|++|+.|+.|+|||+++++.+..+.+|...|.+++|++++++|++++.|++|++||+.+++.
T Consensus 120 ~~~~~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~ 199 (393)
T 1erj_A 120 PSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQC 199 (393)
T ss_dssp -CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE
T ss_pred CCCceeEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCee
Confidence 34566799999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred eeeecCCCCCeEEEEEec-CCCEEEEEECCCcEEEEECCCCeeEEEe-------cccCCceEEEEEcCCCCEEEEEeCCC
Q 005096 221 KANKSAHKESVRDLSFCR-TDLKFCSCSDDTTVKVWDFARCQEERSL-------TGHGWDVKSVDWHPTKSLLVSGGKDS 292 (715)
Q Consensus 221 ~~~~~~h~~~I~~l~~sp-d~~~Las~s~Dg~V~iwdl~~~~~~~~l-------~~~~~~I~si~~spdg~~L~sgs~Dg 292 (715)
...+. +...+.+++|++ ++++|++++.|++|++||+++++.+..+ .+|...|.+++|++++++|++++.|+
T Consensus 200 ~~~~~-~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~ 278 (393)
T 1erj_A 200 SLTLS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDR 278 (393)
T ss_dssp EEEEE-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred EEEEE-cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCC
Confidence 76664 567899999999 8999999999999999999998877766 56888999999999999999999999
Q ss_pred cEEEEECCCC------------ceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEE
Q 005096 293 LVKLWDAKSG------------RELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTAL 360 (715)
Q Consensus 293 ~I~iwDl~s~------------~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l 360 (715)
.|+|||+++. .+...+.+|...|.+++|++++++|++++.|+.|++||+++++.+..+.+|...|.++
T Consensus 279 ~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v 358 (393)
T 1erj_A 279 SVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISV 358 (393)
T ss_dssp EEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE
T ss_pred EEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEE
Confidence 9999999753 3456677899999999999999999999999999999999999999999999999999
Q ss_pred EEccC-----CCCEEEEEeCCCcEEEEEcCC
Q 005096 361 AWHPF-----HEEYFVSGSLDGSIFHWLVGH 386 (715)
Q Consensus 361 ~~sp~-----~~~~l~sgs~DG~I~iwd~~~ 386 (715)
+|++. ++.+|++|+.||+|+||++..
T Consensus 359 ~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 359 AVANGSSLGPEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp EECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred EecCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence 99863 468999999999999999853
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-35 Score=321.61 Aligned_cols=293 Identities=19% Similarity=0.242 Sum_probs=246.5
Q ss_pred ecCCCCccEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCceEEEEe-------------ccCCCEEEEEEcC-CCCEEEE
Q 005096 139 SLNKNRCSINRVLWTP-TGRRLITGSQSGEFTLWNGQSFNFEMILQ-------------AHDHAIRSMVWSH-NDNWMVS 203 (715)
Q Consensus 139 ~l~~H~~~I~~l~~sp-dg~~Latgs~dg~I~Iwd~~~~~~~~~l~-------------~h~~~V~~l~~sp-dg~~L~t 203 (715)
.+.+|.+.|++++|++ ++++|++++.||.|+|||+.+.+....+. .|...|.+++|++ ++++|++
T Consensus 38 ~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s 117 (408)
T 4a11_B 38 VERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTS 117 (408)
T ss_dssp ECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEE
T ss_pred eeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEE
Confidence 5678999999999999 99999999999999999999876554443 5899999999999 7789999
Q ss_pred EeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecC---CCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcC
Q 005096 204 GDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRT---DLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHP 280 (715)
Q Consensus 204 gs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd---~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~sp 280 (715)
++.||.|++||+.+++....+. +...+.++.|++. +.+|++++.|+.|++||+++++.+..+..|...|.+++|++
T Consensus 118 ~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~ 196 (408)
T 4a11_B 118 SSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSP 196 (408)
T ss_dssp EETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECS
T ss_pred EeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECC
Confidence 9999999999999988877765 6788999999884 45999999999999999999999999999999999999999
Q ss_pred CCC-EEEEEeCCCcEEEEECCCCc-eeEEe---------------ccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCC
Q 005096 281 TKS-LLVSGGKDSLVKLWDAKSGR-ELCSF---------------HGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRA 343 (715)
Q Consensus 281 dg~-~L~sgs~Dg~I~iwDl~s~~-~~~~~---------------~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t 343 (715)
+++ +|++++.|+.|++||+++++ .+..+ ..|...|++++|++++++|++++.|+.|++||+++
T Consensus 197 ~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 276 (408)
T 4a11_B 197 RYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSN 276 (408)
T ss_dssp SCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred CCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCC
Confidence 998 68999999999999998765 34443 46788999999999999999999999999999999
Q ss_pred CeEEEEeecCC----CCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECC
Q 005096 344 MKELESFRGHR----KDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSND 419 (715)
Q Consensus 344 ~~~~~~~~~h~----~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~D 419 (715)
++.+..+..+. .....+.+.......+++++.|+.|++||+.+..... .+..|...|++++|++++.+|++++.|
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~s~~~d 355 (408)
T 4a11_B 277 GENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQIT-MLKGHYKTVDCCVFQSNFQELYSGSRD 355 (408)
T ss_dssp CCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEE-EECCCSSCEEEEEEETTTTEEEEEETT
T ss_pred CccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCccee-eeccCCCeEEEEEEcCCCCEEEEECCC
Confidence 88765543321 1112223333356677777889999999998876554 445799999999999999999999999
Q ss_pred CeEEEEecCCCCCc
Q 005096 420 HTTKFWCRNRPGDT 433 (715)
Q Consensus 420 g~I~iWdl~~~~~~ 433 (715)
|.|++|+++.....
T Consensus 356 g~i~iw~~~~~~~~ 369 (408)
T 4a11_B 356 CNILAWVPSLYEPV 369 (408)
T ss_dssp SCEEEEEECC----
T ss_pred CeEEEEeCCCCCcc
Confidence 99999999765543
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-37 Score=334.31 Aligned_cols=291 Identities=17% Similarity=0.306 Sum_probs=248.9
Q ss_pred CCCCcccchhhhhcccccccceEeeehhhheeeEEEEEeccCCCccccccCchhhhcCccceeecCCCCCceeeeEEEEe
Q 005096 60 PYDAHGDSFAAKRMRKLTQRRAVDYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSFAAKFVHTS 139 (715)
Q Consensus 60 ~~~~h~~~~~~~r~~~~~~~~~~~~~~~~~~~~~irvW~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 139 (715)
.+.+|...+.+..+.. ...++.+...+.+|++|+....+ ....
T Consensus 61 ~l~gH~~~V~~~~~sp-----~~~~l~s~s~D~~v~iWd~~~~~--------------------------------~~~~ 103 (380)
T 3iz6_a 61 TLQGHSGKVYSLDWTP-----EKNWIVSASQDGRLIVWNALTSQ--------------------------------KTHA 103 (380)
T ss_dssp EECCCSSCEEEEEECT-----TSSCEEEEETTSEEEEEETTTTE--------------------------------EEEE
T ss_pred cccccccEEEEEEEcC-----CCCEEEEEeCCCeEEEEECCCCc--------------------------------cceE
Confidence 3566766666555433 23466777788999999864322 1224
Q ss_pred cCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC-------ceEEEEeccCCCEEEEEEcCCC-CEEEEEeCCCcEE
Q 005096 140 LNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSF-------NFEMILQAHDHAIRSMVWSHND-NWMVSGDDGGAIK 211 (715)
Q Consensus 140 l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~-------~~~~~l~~h~~~V~~l~~spdg-~~L~tgs~dg~I~ 211 (715)
+..|...|.+++|++++++|++|+.|+.|+|||+.+. .....+.+|.+.|.++.|++++ .+|++|+.|++|+
T Consensus 104 ~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~ 183 (380)
T 3iz6_a 104 IKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCV 183 (380)
T ss_dssp EECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEE
T ss_pred EecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEE
Confidence 5679999999999999999999999999999998653 2455678999999999999874 5799999999999
Q ss_pred EEeCCCCceeeee-----cCCCCCeEEEEEec-CCCEEEEEECCCcEEEEECC-CCeeEEEecccCCceEEEEEcCCCCE
Q 005096 212 YWQNNMNNVKANK-----SAHKESVRDLSFCR-TDLKFCSCSDDTTVKVWDFA-RCQEERSLTGHGWDVKSVDWHPTKSL 284 (715)
Q Consensus 212 iwd~~~~~~~~~~-----~~h~~~I~~l~~sp-d~~~Las~s~Dg~V~iwdl~-~~~~~~~l~~~~~~I~si~~spdg~~ 284 (715)
+||+.+++.+..+ ..|...|.+++|++ ++++|++++.|++|++||++ ..+.+..+.+|...|++++|+|++++
T Consensus 184 ~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~ 263 (380)
T 3iz6_a 184 LWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQR 263 (380)
T ss_dssp EECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSE
T ss_pred EEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCe
Confidence 9999999877666 57889999999977 78999999999999999997 45677888999999999999999999
Q ss_pred EEEEeCCCcEEEEECCCCceeEEeccCC-------CceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEe----ecC
Q 005096 285 LVSGGKDSLVKLWDAKSGRELCSFHGHK-------NMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESF----RGH 353 (715)
Q Consensus 285 L~sgs~Dg~I~iwDl~s~~~~~~~~~~~-------~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~----~~h 353 (715)
|++++.|++|+|||+++++.+..+..+. ..|++++|++++++|++|+.||.|+|||+.+++.+..+ .+|
T Consensus 264 l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h 343 (380)
T 3iz6_a 264 FGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSH 343 (380)
T ss_dssp EEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSC
T ss_pred EEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCC
Confidence 9999999999999999999888776432 24899999999999999999999999999999888777 679
Q ss_pred CCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCC
Q 005096 354 RKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHET 388 (715)
Q Consensus 354 ~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~ 388 (715)
...|++++|++ ++.+|++|+.|++|+||++....
T Consensus 344 ~~~v~~l~~s~-dg~~l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 344 EGRISCLGLSS-DGSALCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp CCCCCEEEECS-SSSEEEEECTTSCEEEEECCSSS
T ss_pred CCceEEEEECC-CCCEEEEeeCCCCEEEEecCCCc
Confidence 99999999999 89999999999999999997654
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-35 Score=325.04 Aligned_cols=279 Identities=23% Similarity=0.425 Sum_probs=254.7
Q ss_pred EecCCCCccE-EEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 005096 138 TSLNKNRCSI-NRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNN 216 (715)
Q Consensus 138 ~~l~~H~~~I-~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~ 216 (715)
..+.+|.+.| +|+.+ ++++|++|+.||+|+|||+.+++.+..+.+|...|.+++|+ +++|++++.||.|++||++
T Consensus 112 ~~l~~h~~~v~~~~~~--~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~ 187 (445)
T 2ovr_B 112 KVLKGHDDHVITCLQF--CGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAE 187 (445)
T ss_dssp EEEECSTTSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETT
T ss_pred EEecccCCCcEEEEEE--cCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECC
Confidence 3577898875 55555 68999999999999999999999999999999999999997 6799999999999999999
Q ss_pred CCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEE
Q 005096 217 MNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKL 296 (715)
Q Consensus 217 ~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~i 296 (715)
+++....+..|...|.+++|+ ++.|++++.|++|++||+++++.+..+..|...|.+++| ++++|++++.|+.|++
T Consensus 188 ~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i 263 (445)
T 2ovr_B 188 TGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKV 263 (445)
T ss_dssp TTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEE
T ss_pred cCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEE
Confidence 999999999999999999995 678999999999999999999999999999999999999 6889999999999999
Q ss_pred EECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCC
Q 005096 297 WDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLD 376 (715)
Q Consensus 297 wDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~D 376 (715)
||+++++.+..+..|...|.+++| ++++|++++.|+.|++||+++++.+..+..|...+.++.++ +++|++++.|
T Consensus 264 wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~~~~d 338 (445)
T 2ovr_B 264 WDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK---DNILVSGNAD 338 (445)
T ss_dssp EEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE---TTEEEEEETT
T ss_pred EECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEe---CCEEEEEeCC
Confidence 999999999999999999999999 78999999999999999999999999999999999999884 5799999999
Q ss_pred CcEEEEEcCCCCceEEEee--ccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCCCC
Q 005096 377 GSIFHWLVGHETPQVEIHN--VHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPG 431 (715)
Q Consensus 377 G~I~iwd~~~~~~~~~~~~--~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~ 431 (715)
|.|++||+++......+.. .|...|++++|+ +.+|++++.||.|++||+....
T Consensus 339 g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~ 393 (445)
T 2ovr_B 339 STVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGE 393 (445)
T ss_dssp SCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCC
T ss_pred CeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCc
Confidence 9999999988776555442 378899999995 6899999999999999997643
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-35 Score=312.00 Aligned_cols=252 Identities=21% Similarity=0.365 Sum_probs=219.8
Q ss_pred EEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC--ceeeeecCCCCCeEEEEEec--CCCEEEEEECCCcEEEE
Q 005096 180 MILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN--NVKANKSAHKESVRDLSFCR--TDLKFCSCSDDTTVKVW 255 (715)
Q Consensus 180 ~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~--~~~~~~~~h~~~I~~l~~sp--d~~~Las~s~Dg~V~iw 255 (715)
..+.+|...|++++|++++++|++|+.|++|+|||++.. +.+..+.+|...|.+++|++ ++++|++++.|++|+||
T Consensus 3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iW 82 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIW 82 (297)
T ss_dssp EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEE
T ss_pred eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEE
Confidence 456789999999999999999999999999999999753 56778899999999999986 48999999999999999
Q ss_pred ECCCCe--eEEEecccCCceEEEEEcCC--CCEEEEEeCCCcEEEEECCCCc--eeEEeccCCCceEEEEEcCC------
Q 005096 256 DFARCQ--EERSLTGHGWDVKSVDWHPT--KSLLVSGGKDSLVKLWDAKSGR--ELCSFHGHKNMVLCVKWNQN------ 323 (715)
Q Consensus 256 dl~~~~--~~~~l~~~~~~I~si~~spd--g~~L~sgs~Dg~I~iwDl~s~~--~~~~~~~~~~~I~sl~~spd------ 323 (715)
|+++++ .+..+..|...|.+++|+++ +.+|++++.|+.|++||++++. ....+..|...|.+++|+++
T Consensus 83 d~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~ 162 (297)
T 2pm7_B 83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG 162 (297)
T ss_dssp EBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC-----
T ss_pred EcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccc
Confidence 998763 55667789999999999997 8899999999999999998763 24567789999999999996
Q ss_pred -------CCEEEEEECCCeEEEEECCCCe----EEEEeecCCCCeEEEEEccCC--CCEEEEEeCCCcEEEEEcCCCCc-
Q 005096 324 -------GNWVLTASKDQIIKLYDIRAMK----ELESFRGHRKDVTALAWHPFH--EEYFVSGSLDGSIFHWLVGHETP- 389 (715)
Q Consensus 324 -------g~~Lasgs~dg~I~iwDl~t~~----~~~~~~~h~~~V~~l~~sp~~--~~~l~sgs~DG~I~iwd~~~~~~- 389 (715)
+++|++++.|+.|+|||+++++ .+..+.+|...|.+++|+|++ +.+|++++.|++|+|||++....
T Consensus 163 ~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~ 242 (297)
T 2pm7_B 163 EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGP 242 (297)
T ss_dssp -------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSC
T ss_pred cCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCc
Confidence 5799999999999999998765 567888999999999999953 58999999999999999977532
Q ss_pred -eEEEe--eccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCCCC
Q 005096 390 -QVEIH--NVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPG 431 (715)
Q Consensus 390 -~~~~~--~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~ 431 (715)
..... ..|...|++++|++++++|++++.|+.|+||+.+..+
T Consensus 243 ~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~~g 287 (297)
T 2pm7_B 243 WKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 287 (297)
T ss_dssp CEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTS
T ss_pred cceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECCCC
Confidence 22333 4577899999999999999999999999999986543
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-35 Score=354.33 Aligned_cols=292 Identities=23% Similarity=0.369 Sum_probs=266.4
Q ss_pred EEecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 005096 137 HTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNN 216 (715)
Q Consensus 137 ~~~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~ 216 (715)
.+.+.+|.+.|++++|+|++++|++++.||.|+|||+.+++.+..+..|...|++++|++++++|++++.||.|+|||+.
T Consensus 6 ~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~ 85 (814)
T 3mkq_A 6 KKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYN 85 (814)
T ss_dssp EEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETT
T ss_pred ceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECC
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCC-eeEEEecccCCceEEEEEcC-CCCEEEEEeCCCcE
Q 005096 217 MNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARC-QEERSLTGHGWDVKSVDWHP-TKSLLVSGGKDSLV 294 (715)
Q Consensus 217 ~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~-~~~~~l~~~~~~I~si~~sp-dg~~L~sgs~Dg~I 294 (715)
+++....+..|...|++++|++++.+|++++.|++|++||+.++ .....+..|...|.+++|++ ++++|++++.|+.|
T Consensus 86 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v 165 (814)
T 3mkq_A 86 TGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTV 165 (814)
T ss_dssp TCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEE
T ss_pred CCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeE
Confidence 99999999999999999999999999999999999999999876 67788888999999999999 88899999999999
Q ss_pred EEEECCCCceeEEeccCC-CceEEEEEcC--CCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEE
Q 005096 295 KLWDAKSGRELCSFHGHK-NMVLCVKWNQ--NGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFV 371 (715)
Q Consensus 295 ~iwDl~s~~~~~~~~~~~-~~I~sl~~sp--dg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~ 371 (715)
++||+++++....+..+. ..+.+++|++ ++++|++++.|+.|++||+++++.+..+..|...|++++|++ ++.+|+
T Consensus 166 ~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~ 244 (814)
T 3mkq_A 166 KVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHP-TLPIII 244 (814)
T ss_dssp EEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECS-SSSEEE
T ss_pred EEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcC-CCCEEE
Confidence 999999888777776554 8899999999 999999999999999999999999999999999999999999 888999
Q ss_pred EEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCE-EEEEECCCeEEEEecCCC
Q 005096 372 SGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYL-LCSGSNDHTTKFWCRNRP 430 (715)
Q Consensus 372 sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~-L~sgs~Dg~I~iWdl~~~ 430 (715)
+++.||.|++||+.+..... ....|...|++++|++++.. +++++.|+.+.+|++...
T Consensus 245 ~~~~dg~v~vwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (814)
T 3mkq_A 245 SGSEDGTLKIWNSSTYKVEK-TLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGND 303 (814)
T ss_dssp EEETTSCEEEEETTTCSEEE-EECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCC
T ss_pred EEeCCCeEEEEECCCCcEEE-EeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCC
Confidence 99999999999998876554 44467889999999999863 244455778889987654
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-35 Score=311.81 Aligned_cols=248 Identities=19% Similarity=0.334 Sum_probs=217.8
Q ss_pred ecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCC--CceEEEEeccCCCEEEEEEcCC--CCEEEEEeCCCcEEEEe
Q 005096 139 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQS--FNFEMILQAHDHAIRSMVWSHN--DNWMVSGDDGGAIKYWQ 214 (715)
Q Consensus 139 ~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~--~~~~~~l~~h~~~V~~l~~spd--g~~L~tgs~dg~I~iwd 214 (715)
.+.+|.+.|++++|+++|++||+|+.|++|+|||+.+ .+.+..+.+|.+.|.+++|+++ +++|++|+.|++|+|||
T Consensus 4 ~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd 83 (297)
T 2pm7_B 4 IANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWK 83 (297)
T ss_dssp ECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEE
T ss_pred eccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEE
Confidence 5789999999999999999999999999999999874 4678899999999999999863 89999999999999999
Q ss_pred CCCCc--eeeeecCCCCCeEEEEEecC--CCEEEEEECCCcEEEEECCCCe--eEEEecccCCceEEEEEcCC-------
Q 005096 215 NNMNN--VKANKSAHKESVRDLSFCRT--DLKFCSCSDDTTVKVWDFARCQ--EERSLTGHGWDVKSVDWHPT------- 281 (715)
Q Consensus 215 ~~~~~--~~~~~~~h~~~I~~l~~spd--~~~Las~s~Dg~V~iwdl~~~~--~~~~l~~~~~~I~si~~spd------- 281 (715)
+++++ .+..+..|...|.+++|+++ +.+|++++.|++|++||+++.. ....+.+|...|.+++|+++
T Consensus 84 ~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~ 163 (297)
T 2pm7_B 84 EENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGE 163 (297)
T ss_dssp BSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------
T ss_pred cCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCccccccc
Confidence 98764 45566789999999999997 7899999999999999997653 24567789999999999997
Q ss_pred ------CCEEEEEeCCCcEEEEECCCCc----eeEEeccCCCceEEEEEcCCC---CEEEEEECCCeEEEEECCCCe---
Q 005096 282 ------KSLLVSGGKDSLVKLWDAKSGR----ELCSFHGHKNMVLCVKWNQNG---NWVLTASKDQIIKLYDIRAMK--- 345 (715)
Q Consensus 282 ------g~~L~sgs~Dg~I~iwDl~s~~----~~~~~~~~~~~I~sl~~spdg---~~Lasgs~dg~I~iwDl~t~~--- 345 (715)
+++|++++.|++|+|||+++++ .+..+.+|...|.+++|++++ ++|++++.|++|+|||+++..
T Consensus 164 ~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~ 243 (297)
T 2pm7_B 164 HNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPW 243 (297)
T ss_dssp ------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCC
T ss_pred CCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCcc
Confidence 5799999999999999998766 566788999999999999984 899999999999999998643
Q ss_pred EEEEe--ecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCC
Q 005096 346 ELESF--RGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHE 387 (715)
Q Consensus 346 ~~~~~--~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~ 387 (715)
....+ ..|...|.+++|++ ++++|++++.|+.|+||+....
T Consensus 244 ~~~~~~~~~~~~~v~~~~~s~-~g~~las~~~D~~v~lw~~~~~ 286 (297)
T 2pm7_B 244 KKTLLKEEKFPDVLWRASWSL-SGNVLALSGGDNKVTLWKENLE 286 (297)
T ss_dssp EEEESSSSCCSSCEEEEEECS-SSCCEEEEETTSCEEEEEECTT
T ss_pred ceeeeecccCCCcEEEEEECC-CCCEEEEEcCCCcEEEEEECCC
Confidence 12233 46788999999999 8899999999999999998644
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-35 Score=315.00 Aligned_cols=280 Identities=15% Similarity=0.138 Sum_probs=245.9
Q ss_pred ecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc---eEEEEeccCCCEEEEEEcCCCC-EEEEEeCCCcEEEEe
Q 005096 139 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFN---FEMILQAHDHAIRSMVWSHNDN-WMVSGDDGGAIKYWQ 214 (715)
Q Consensus 139 ~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~---~~~~l~~h~~~V~~l~~spdg~-~L~tgs~dg~I~iwd 214 (715)
...+|.+.|++++|++++++|++++.||.|+|||+.+.+ ....+..|...|.+++|+++++ +|++++.||.|++||
T Consensus 6 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd 85 (342)
T 1yfq_A 6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVD 85 (342)
T ss_dssp CSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEEC
T ss_pred cccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEE
Confidence 346899999999999999999999999999999998876 3455668999999999999999 999999999999999
Q ss_pred C-CCCceeeeecC--CCCCeEEEEEecCCCEEEEEECCCcEEEEECCC---------CeeEEEecccCCceEEEEEcCCC
Q 005096 215 N-NMNNVKANKSA--HKESVRDLSFCRTDLKFCSCSDDTTVKVWDFAR---------CQEERSLTGHGWDVKSVDWHPTK 282 (715)
Q Consensus 215 ~-~~~~~~~~~~~--h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~---------~~~~~~l~~~~~~I~si~~spdg 282 (715)
+ ++++. ..+.. |...|.+++|++ +++|++++.|+.|++||+++ .+.+..+. +...|.+++|++++
T Consensus 86 ~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~ 162 (342)
T 1yfq_A 86 LIGSPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNSSR 162 (342)
T ss_dssp SSSSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECSSE
T ss_pred eccCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecCCc
Confidence 9 77755 56677 999999999999 99999999999999999987 66666666 88899999999876
Q ss_pred CEEEEEeCCCcEEEEECCC-Cce--eEEeccCCCceEEEEEcC-CCCEEEEEECCCeEEEEECCCC------eEEEEeec
Q 005096 283 SLLVSGGKDSLVKLWDAKS-GRE--LCSFHGHKNMVLCVKWNQ-NGNWVLTASKDQIIKLYDIRAM------KELESFRG 352 (715)
Q Consensus 283 ~~L~sgs~Dg~I~iwDl~s-~~~--~~~~~~~~~~I~sl~~sp-dg~~Lasgs~dg~I~iwDl~t~------~~~~~~~~ 352 (715)
|++++.|+.|++||+++ +.. ......+...|.+++|++ ++++|++++.||.|+|||++.. +.+..+..
T Consensus 163 --l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~ 240 (342)
T 1yfq_A 163 --LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRC 240 (342)
T ss_dssp --EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEEC
T ss_pred --EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeec
Confidence 99999999999999998 543 334456788999999999 9999999999999999999887 77788888
Q ss_pred CCC---------CeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeecc-CCCEEEEEEcCCCCEEEEEECCCe-
Q 005096 353 HRK---------DVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVH-DNTVWDLAWHPIGYLLCSGSNDHT- 421 (715)
Q Consensus 353 h~~---------~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h-~~~V~~l~~spdg~~L~sgs~Dg~- 421 (715)
|.. .|.+++|++ ++++|++++.||.|++||+++...... +..| ...|++++ +++.+|++++.||.
T Consensus 241 ~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~~~~~~-~~~~h~~~v~~~~--~~~~~l~s~s~Dg~~ 316 (342)
T 1yfq_A 241 HRLNLKDTNLAYPVNSIEFSP-RHKFLYTAGSDGIISCWNLQTRKKIKN-FAKFNEDSVVKIA--CSDNILCLATSDDTF 316 (342)
T ss_dssp CCCCTTCCSSCCCEEEEEECT-TTCCEEEEETTSCEEEEETTTTEEEEE-CCCCSSSEEEEEE--ECSSEEEEEEECTHH
T ss_pred ccccccccccceeEEEEEEcC-CCCEEEEecCCceEEEEcCccHhHhhh-hhcccCCCceEec--CCCCeEEEEecCCcc
Confidence 865 999999999 788999999999999999988766544 4456 89999999 89999999999998
Q ss_pred EEEEec
Q 005096 422 TKFWCR 427 (715)
Q Consensus 422 I~iWdl 427 (715)
.+.|..
T Consensus 317 ~~~~~~ 322 (342)
T 1yfq_A 317 KTNAAI 322 (342)
T ss_dssp HHCSSS
T ss_pred cccccc
Confidence 555553
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-36 Score=324.89 Aligned_cols=281 Identities=11% Similarity=0.095 Sum_probs=231.1
Q ss_pred CccEEEEEEcCCCCEEEEEeCC-------CeEEEEeCCCCce----------EEEEeccCCCEEEEEEcCCCCEEEEEe-
Q 005096 144 RCSINRVLWTPTGRRLITGSQS-------GEFTLWNGQSFNF----------EMILQAHDHAIRSMVWSHNDNWMVSGD- 205 (715)
Q Consensus 144 ~~~I~~l~~spdg~~Latgs~d-------g~I~Iwd~~~~~~----------~~~l~~h~~~V~~l~~spdg~~L~tgs- 205 (715)
..+|+|++|++|+++|++|+.+ +.|+||++..... ...+..|+..|.+++++ ++.++++.
T Consensus 14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~g~~ 91 (365)
T 4h5i_A 14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILVGCN 91 (365)
T ss_dssp SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEEECC
T ss_pred CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEEEEC
Confidence 4589999999999999999754 3599999765431 23456788888888775 56666653
Q ss_pred ----------CCCcEEEEeCCCCceeee---------ecCCCCCeEEEEEecCCCEEEEEE--CCCcEEEEECCCCeeEE
Q 005096 206 ----------DGGAIKYWQNNMNNVKAN---------KSAHKESVRDLSFCRTDLKFCSCS--DDTTVKVWDFARCQEER 264 (715)
Q Consensus 206 ----------~dg~I~iwd~~~~~~~~~---------~~~h~~~I~~l~~spd~~~Las~s--~Dg~V~iwdl~~~~~~~ 264 (715)
.|+.|++|+++....... ...+...+.+++|++|+++|++++ .|++|+|||+++++.+.
T Consensus 92 ~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~ 171 (365)
T 4h5i_A 92 ENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKF 171 (365)
T ss_dssp CCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEE
T ss_pred CCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEE
Confidence 567899998765432111 123445689999999999987655 68999999999999988
Q ss_pred EecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEE--eccCCCceEEEEEcCCCCEEEEEECCC----eEEE
Q 005096 265 SLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCS--FHGHKNMVLCVKWNQNGNWVLTASKDQ----IIKL 338 (715)
Q Consensus 265 ~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~--~~~~~~~I~sl~~spdg~~Lasgs~dg----~I~i 338 (715)
.+. |...|.+|+|+||+++|++++.| .+++|+..+++.+.. ...|...|.+++|++++++|++++.|+ .|++
T Consensus 172 ~~~-~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~ 249 (365)
T 4h5i_A 172 EIE-TRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTK 249 (365)
T ss_dssp EEE-CSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEE
T ss_pred EeC-CCCceEEEEEccCCceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEee
Confidence 886 77789999999999999998855 577777777776544 345788899999999999999999887 6889
Q ss_pred EECCCCeE----EEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEE
Q 005096 339 YDIRAMKE----LESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLC 414 (715)
Q Consensus 339 wDl~t~~~----~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~ 414 (715)
||+..... ...+..|...|++++|+| ++++||+|+.|++|+|||+++.+.+..+..+|...|++|+|+||+++||
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~V~~~~~Sp-dg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~la 328 (365)
T 4h5i_A 250 ISIKSGNTSVLRSKQVTNRFKGITSMDVDM-KGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVA 328 (365)
T ss_dssp EEEETTEEEEEEEEEEESSCSCEEEEEECT-TSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEE
T ss_pred cccccceecceeeeeecCCCCCeEeEEECC-CCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEE
Confidence 99877654 356778999999999999 8999999999999999999998877777888999999999999999999
Q ss_pred EEECCCeEEEEecCC
Q 005096 415 SGSNDHTTKFWCRNR 429 (715)
Q Consensus 415 sgs~Dg~I~iWdl~~ 429 (715)
+++.|++|+||++..
T Consensus 329 S~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 329 SVSAANTIHIIKLPL 343 (365)
T ss_dssp EEETTSEEEEEECCT
T ss_pred EEeCCCeEEEEEcCC
Confidence 999999999999954
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-35 Score=369.25 Aligned_cols=291 Identities=19% Similarity=0.355 Sum_probs=264.3
Q ss_pred ecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 005096 139 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN 218 (715)
Q Consensus 139 ~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~ 218 (715)
.+.+|.+.|++++|++++++|++|+.||+|+|||+.+++.+..+.+|...|.+++|++++++|++++.|+.|+|||+.++
T Consensus 610 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~ 689 (1249)
T 3sfz_A 610 VVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATG 689 (1249)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC
T ss_pred EEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeeecCCCCCeEEEEEec--CCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEE
Q 005096 219 NVKANKSAHKESVRDLSFCR--TDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKL 296 (715)
Q Consensus 219 ~~~~~~~~h~~~I~~l~~sp--d~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~i 296 (715)
+.+..+..|...|.+++|++ ++.++++++.|+.|++||+++++.+..+.+|...|++++|++++++|++++.|+.|++
T Consensus 690 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~v 769 (1249)
T 3sfz_A 690 KLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRL 769 (1249)
T ss_dssp CEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEE
T ss_pred ceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEE
Confidence 99999999999999999999 5568999999999999999999999999999999999999999999999999999999
Q ss_pred EECCCCceeEEe-------------------------------------------------------ccCCCceEEEEEc
Q 005096 297 WDAKSGRELCSF-------------------------------------------------------HGHKNMVLCVKWN 321 (715)
Q Consensus 297 wDl~s~~~~~~~-------------------------------------------------------~~~~~~I~sl~~s 321 (715)
||+++++....+ ..|...|.+++|+
T Consensus 770 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~s 849 (1249)
T 3sfz_A 770 WDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFS 849 (1249)
T ss_dssp EEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEEC
T ss_pred EeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEc
Confidence 998776543322 1566788999999
Q ss_pred CCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCC--------------
Q 005096 322 QNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHE-------------- 387 (715)
Q Consensus 322 pdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~-------------- 387 (715)
++++++++++.|+.|++||+.++..+..+.+|...|++++|++ ++.+|++++.||.|++||+...
T Consensus 850 p~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp-dg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~ 928 (1249)
T 3sfz_A 850 PYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSP-DGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDV 928 (1249)
T ss_dssp SSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEE
T ss_pred CCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECC-CCCEEEEEeCCCeEEEEEccccceeeeecccceeeE
Confidence 9999999999999999999999999999999999999999999 8889999999999999985320
Q ss_pred ----------------------------------------------------------------CceEEEeeccCCCEEE
Q 005096 388 ----------------------------------------------------------------TPQVEIHNVHDNTVWD 403 (715)
Q Consensus 388 ----------------------------------------------------------------~~~~~~~~~h~~~V~~ 403 (715)
.........|...|++
T Consensus 929 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~ 1008 (1249)
T 3sfz_A 929 VFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRH 1008 (1249)
T ss_dssp EEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCC
T ss_pred EEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEE
Confidence 1112233457888999
Q ss_pred EEEcCCCCEEEEEECCCeEEEEecCCC
Q 005096 404 LAWHPIGYLLCSGSNDHTTKFWCRNRP 430 (715)
Q Consensus 404 l~~spdg~~L~sgs~Dg~I~iWdl~~~ 430 (715)
++|++++++|++++.||.|++|++...
T Consensus 1009 l~~s~dg~~l~s~~~dg~i~vwd~~~~ 1035 (1249)
T 3sfz_A 1009 IQFTADGKTLISSSEDSVIQVWNWQTG 1035 (1249)
T ss_dssp EEECSSSSCEEEECSSSBEEEEETTTT
T ss_pred EEECCCCCEEEEEcCCCEEEEEECCCC
Confidence 999999999999999999999998654
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-35 Score=366.48 Aligned_cols=332 Identities=20% Similarity=0.329 Sum_probs=274.2
Q ss_pred CCcccchhhhhcccccccceEeeehhhheeeEEEEEeccCCCccccccCchhhhcCccceeecCCCCCceeeeEEEEecC
Q 005096 62 DAHGDSFAAKRMRKLTQRRAVDYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSFAAKFVHTSLN 141 (715)
Q Consensus 62 ~~h~~~~~~~r~~~~~~~~~~~~~~~~~~~~~irvW~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~ 141 (715)
.+|...+.+..+.. ...++.+...+++|++|+....+ ....+.
T Consensus 612 ~~h~~~v~~~~~s~-----~~~~l~s~~~d~~i~vw~~~~~~--------------------------------~~~~~~ 654 (1249)
T 3sfz_A 612 RPHTDAVYHACFSQ-----DGQRIASCGADKTLQVFKAETGE--------------------------------KLLDIK 654 (1249)
T ss_dssp CCCSSCEEEEEECT-----TSSEEEEEETTSCEEEEETTTCC--------------------------------EEEEEC
T ss_pred ecccccEEEEEECC-----CCCEEEEEeCCCeEEEEECCCCC--------------------------------EEEEec
Confidence 44555544433322 23355556677889999875332 122467
Q ss_pred CCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcC--CCCEEEEEeCCCcEEEEeCCCCc
Q 005096 142 KNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSH--NDNWMVSGDDGGAIKYWQNNMNN 219 (715)
Q Consensus 142 ~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~sp--dg~~L~tgs~dg~I~iwd~~~~~ 219 (715)
+|.+.|++++|++++++|++++.||+|+|||+.+++.+..+..|...|.+++|++ ++.+|++++.|+.|++||+.+++
T Consensus 655 ~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~ 734 (1249)
T 3sfz_A 655 AHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKE 734 (1249)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSS
T ss_pred cCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcc
Confidence 8999999999999999999999999999999999999999999999999999999 45689999999999999999999
Q ss_pred eeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEe---------------------------------
Q 005096 220 VKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSL--------------------------------- 266 (715)
Q Consensus 220 ~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l--------------------------------- 266 (715)
....+..|...|.+++|++++++|++++.||+|++||+.+++....+
T Consensus 735 ~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~ 814 (1249)
T 3sfz_A 735 CRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKII 814 (1249)
T ss_dssp EEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEE
T ss_pred hhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEE
Confidence 99999999999999999999999999999999999998766543322
Q ss_pred ----------------------cccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCceEEEEEcCCC
Q 005096 267 ----------------------TGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNG 324 (715)
Q Consensus 267 ----------------------~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg 324 (715)
.+|...|.+++|+++++++++++.|+.|++||+++++.+..+.+|...|++++|++++
T Consensus 815 ~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg 894 (1249)
T 3sfz_A 815 VAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDG 894 (1249)
T ss_dssp EEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS
T ss_pred EEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCC
Confidence 1567789999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEECCCeEEEEECC--------------------------------------------------------------
Q 005096 325 NWVLTASKDQIIKLYDIR-------------------------------------------------------------- 342 (715)
Q Consensus 325 ~~Lasgs~dg~I~iwDl~-------------------------------------------------------------- 342 (715)
++|++++.|+.|++||++
T Consensus 895 ~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~ 974 (1249)
T 3sfz_A 895 SSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLE 974 (1249)
T ss_dssp SEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSS
T ss_pred CEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCC
Confidence 999999999988888853
Q ss_pred -----------------CCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCce---------------
Q 005096 343 -----------------AMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQ--------------- 390 (715)
Q Consensus 343 -----------------t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~--------------- 390 (715)
+++.+..+..|...|++++|++ ++++|++++.||.|++||+.++...
T Consensus 975 ~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~-dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~ 1053 (1249)
T 3sfz_A 975 YVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTA-DGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLL 1053 (1249)
T ss_dssp EEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECS-SSSCEEEECSSSBEEEEETTTTEEECCBCCSSCEEEEEEC
T ss_pred EEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECC-CCCEEEEEcCCCEEEEEECCCCceEEEecCCCcEEEEEEc
Confidence 2233444557888899999999 7888999999999999987653211
Q ss_pred ------------------------EEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCCCC
Q 005096 391 ------------------------VEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPG 431 (715)
Q Consensus 391 ------------------------~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~ 431 (715)
...+..|.+.|++++|++++.+|++++.|++|++||+....
T Consensus 1054 ~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~ 1118 (1249)
T 3sfz_A 1054 QDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLS 1118 (1249)
T ss_dssp SSSEEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSS
T ss_pred CCCcEEEEECCCcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcc
Confidence 12233467778888899988889999999999999886544
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-34 Score=301.66 Aligned_cols=276 Identities=23% Similarity=0.425 Sum_probs=235.3
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEe--ccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeee
Q 005096 147 INRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQ--AHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANK 224 (715)
Q Consensus 147 I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~--~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~ 224 (715)
+++|+||+++ +||+| .|++|+|||+++++.+..+. .|...|++++|++++++|++|+.||+|+|||+++++.+..+
T Consensus 28 ~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~ 105 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM 105 (318)
T ss_dssp CBCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred ceEEEECCCC-EEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEe
Confidence 5789999886 67766 48999999999999888775 56778999999999999999999999999999999999999
Q ss_pred cCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCC-eeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 005096 225 SAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARC-QEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGR 303 (715)
Q Consensus 225 ~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~-~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~ 303 (715)
..|...+.++.+ ++..|++++.++.+++|+.... ..+..+.+|...+.++++++++++|++++.|+.|+|||+++++
T Consensus 106 ~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~ 183 (318)
T 4ggc_A 106 TSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGE 183 (318)
T ss_dssp ECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBT
T ss_pred cCccceEEEeec--CCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCc
Confidence 999988877665 5679999999999999998765 4556778899999999999999999999999999999998765
Q ss_pred e----eEEeccCCCceEEEEEcCCCCEE---EEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEE--e
Q 005096 304 E----LCSFHGHKNMVLCVKWNQNGNWV---LTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSG--S 374 (715)
Q Consensus 304 ~----~~~~~~~~~~I~sl~~spdg~~L---asgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sg--s 374 (715)
. +.....+...|.++++++++..+ ++++.++.|++||.+......... +...+..+.|++ .+..++++ +
T Consensus 184 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~-~~~~v~~~~~~~-~~~~~~~~sg~ 261 (318)
T 4ggc_A 184 GGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD-AHSQVCSILWSP-HYKELISGHGF 261 (318)
T ss_dssp TBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEEET-TTTEEEEEECT
T ss_pred ccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccc-ceeeeeeeeecc-cccceEEEEEc
Confidence 3 34456678889999999966533 355678999999999877766554 677899999999 55555444 4
Q ss_pred CCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCC
Q 005096 375 LDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNR 429 (715)
Q Consensus 375 ~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~ 429 (715)
.|+.|+|||+++...+. .+.+|.+.|++++|++|+.+|++++.||+|+|||+.+
T Consensus 262 ~d~~i~iwd~~~~~~~~-~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~ 315 (318)
T 4ggc_A 262 AQNQLVIWKYPTMAKVA-ELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFE 315 (318)
T ss_dssp TTCCEEEEETTTCCEEE-EECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSC
T ss_pred CCCEEEEEECCCCcEEE-EEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCC
Confidence 79999999998876654 4567999999999999999999999999999999854
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-35 Score=312.76 Aligned_cols=293 Identities=17% Similarity=0.293 Sum_probs=224.7
Q ss_pred EecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC----ceEEEEeccCCCEEEEEEcC--CCCEEEEEeCCCcEE
Q 005096 138 TSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSF----NFEMILQAHDHAIRSMVWSH--NDNWMVSGDDGGAIK 211 (715)
Q Consensus 138 ~~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~----~~~~~l~~h~~~V~~l~~sp--dg~~L~tgs~dg~I~ 211 (715)
..+.+|.+.|++++|++++++|++++.||.|+|||+.+. +....+..|...|++++|++ |+++|++++.||.|+
T Consensus 5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~ 84 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVK 84 (351)
T ss_dssp CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEE
Confidence 356899999999999999999999999999999999876 46777889999999999999 689999999999999
Q ss_pred EEeCCCC---------ceeeeecCCCCCeEEEEEecC--CCEEEEEECCCcEEEEECCCCeeEEEec-------------
Q 005096 212 YWQNNMN---------NVKANKSAHKESVRDLSFCRT--DLKFCSCSDDTTVKVWDFARCQEERSLT------------- 267 (715)
Q Consensus 212 iwd~~~~---------~~~~~~~~h~~~I~~l~~spd--~~~Las~s~Dg~V~iwdl~~~~~~~~l~------------- 267 (715)
|||++++ +....+..|...|.+++|+++ +++|++++.|+.|++||+++.+.+..+.
T Consensus 85 vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 164 (351)
T 3f3f_A 85 LWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPA 164 (351)
T ss_dssp EEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCS
T ss_pred EEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccC
Confidence 9999876 456777889999999999999 9999999999999999998766543332
Q ss_pred ccCCceEEEEEcCC---CCEEEEEeCCCcEEEEECCCCce--eEEeccCCCceEEEEEcCCC----CEEEEEECCCeEEE
Q 005096 268 GHGWDVKSVDWHPT---KSLLVSGGKDSLVKLWDAKSGRE--LCSFHGHKNMVLCVKWNQNG----NWVLTASKDQIIKL 338 (715)
Q Consensus 268 ~~~~~I~si~~spd---g~~L~sgs~Dg~I~iwDl~s~~~--~~~~~~~~~~I~sl~~spdg----~~Lasgs~dg~I~i 338 (715)
.+...+.+++|+++ +++|++++.|+.+.+|+...++. +..+.+|...|++++|++++ ++|++++.||.|++
T Consensus 165 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~i 244 (351)
T 3f3f_A 165 NHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRI 244 (351)
T ss_dssp SCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEE
T ss_pred CcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEE
Confidence 57788999999997 89999999999998888887765 66778899999999999998 89999999999999
Q ss_pred EECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeC----CCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEE
Q 005096 339 YDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSL----DGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLC 414 (715)
Q Consensus 339 wDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~----DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~ 414 (715)
||++++............+.....+. ....++.+.. +..+.+|+.... ........|...|++++|++++++|+
T Consensus 245 wd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~h~~~v~~~~~s~~~~~l~ 322 (351)
T 3f3f_A 245 FKITEKLSPLASEESLTNSNMFDNSA-DVDMDAQGRSDSNTEEKAELQSNLQV-ELLSEHDDHNGEVWSVSWNLTGTILS 322 (351)
T ss_dssp EEEEECC----------------------------------------CCSEEE-EEEEEECTTSSCEEEEEECSSSCCEE
T ss_pred EeCCCCcCccccCCcccceeccCCCc-ccccccccccccccceeeeecccccc-cEEEEEecccccEEEEEEcCCCCEEE
Confidence 99987765554444444444444333 2333333332 233444443222 23344567899999999999999999
Q ss_pred EEECCCeEEEEecCCCCC
Q 005096 415 SGSNDHTTKFWCRNRPGD 432 (715)
Q Consensus 415 sgs~Dg~I~iWdl~~~~~ 432 (715)
+++.||.|+||+++....
T Consensus 323 s~~~dg~v~iw~~~~~~~ 340 (351)
T 3f3f_A 323 SAGDDGKVRLWKATYSNE 340 (351)
T ss_dssp EEETTSCEEEEEECTTSC
T ss_pred EecCCCcEEEEecCcCcc
Confidence 999999999999976443
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-36 Score=342.89 Aligned_cols=285 Identities=8% Similarity=0.061 Sum_probs=225.4
Q ss_pred ecCCCCccEEEEEEcCC------CCEEEEEeCCCeEEEEeCCCCce-----------EEEEeccCCCEEEEEEcCCCCEE
Q 005096 139 SLNKNRCSINRVLWTPT------GRRLITGSQSGEFTLWNGQSFNF-----------EMILQAHDHAIRSMVWSHNDNWM 201 (715)
Q Consensus 139 ~l~~H~~~I~~l~~spd------g~~Latgs~dg~I~Iwd~~~~~~-----------~~~l~~h~~~V~~l~~spdg~~L 201 (715)
.+.+|.+.|++|+|+|+ +.+||+++.||+|+|||+.+.+. ...+.+|...|++++|+++ +.|
T Consensus 202 ~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~l 280 (524)
T 2j04_B 202 TIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP-TTV 280 (524)
T ss_dssp EEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS-SEE
T ss_pred EEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC-CeE
Confidence 35568899999999997 57999999999999999986542 2467889999999999975 589
Q ss_pred EEEeCCCcEEEEeCCCCc-eeeeecCCCCCeEEE--EEecCC-CEEEEEECCCcEEEEECCCCeeEEEecccCC--ceEE
Q 005096 202 VSGDDGGAIKYWQNNMNN-VKANKSAHKESVRDL--SFCRTD-LKFCSCSDDTTVKVWDFARCQEERSLTGHGW--DVKS 275 (715)
Q Consensus 202 ~tgs~dg~I~iwd~~~~~-~~~~~~~h~~~I~~l--~~spd~-~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~--~I~s 275 (715)
++|+.||+|+|||++++. ....+..|...|.+| +|++++ .+|++++.|++|+|||+++.+.+..+.+|.. .|.+
T Consensus 281 asgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~ 360 (524)
T 2j04_B 281 VCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVP 360 (524)
T ss_dssp EEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCC
T ss_pred EEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccc
Confidence 999999999999998764 445578899999999 567787 8999999999999999998877766666653 5889
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeec---
Q 005096 276 VDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRG--- 352 (715)
Q Consensus 276 i~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~--- 352 (715)
++|+|+++.|++++.|++|+|||++++.++..+.+|.+.|++|+|++++++|++|+.|++|+|||+... .+..++.
T Consensus 361 v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~-~~~~~~~~~~ 439 (524)
T 2j04_B 361 VVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARR-LLHGIKNSSA 439 (524)
T ss_dssp EEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSS-TTTCC-----
T ss_pred eEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHh-hccccccCcc
Confidence 999999999999999999999999999988888899999999999999999999999999999998653 2222211
Q ss_pred --CCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCC---CEEEEEECCCeEEEEec
Q 005096 353 --HRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIG---YLLCSGSNDHTTKFWCR 427 (715)
Q Consensus 353 --h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg---~~L~sgs~Dg~I~iWdl 427 (715)
+...|.+++|++ ++..+ .... .+.+|+..........+.+|...|++++|++++ ..|++|+.||.|+||++
T Consensus 440 ~~~~~~v~~v~~sp-~g~~~-~~~~--~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l 515 (524)
T 2j04_B 440 TQKSLRLWKWDYSI-KDDKY-RIDS--SYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYL 515 (524)
T ss_dssp -CCCCEEEECBCCS-SSCEE-EECC--CCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEEC
T ss_pred ceeeeEEEEeccCC-CCCeE-EccC--CceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEEc
Confidence 112467899999 45543 2222 233443332223344566799999999999995 49999999999999998
Q ss_pred CC
Q 005096 428 NR 429 (715)
Q Consensus 428 ~~ 429 (715)
..
T Consensus 516 ~~ 517 (524)
T 2j04_B 516 SL 517 (524)
T ss_dssp SC
T ss_pred cc
Confidence 64
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-36 Score=316.72 Aligned_cols=252 Identities=17% Similarity=0.312 Sum_probs=211.6
Q ss_pred EEEEecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc--eEEEEeccCCCEEEEEEcC--CCCEEEEEeCCCcE
Q 005096 135 FVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFN--FEMILQAHDHAIRSMVWSH--NDNWMVSGDDGGAI 210 (715)
Q Consensus 135 ~~~~~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~--~~~~l~~h~~~V~~l~~sp--dg~~L~tgs~dg~I 210 (715)
++.+.+.+|.+.|++++|+++|++||+|+.|++|+|||+.+++ .+..+.+|...|.+++|++ ++++|++|+.|++|
T Consensus 4 ~~~~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v 83 (316)
T 3bg1_A 4 VINTVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKV 83 (316)
T ss_dssp ----------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCE
T ss_pred eeeeecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEE
Confidence 4556788999999999999999999999999999999998764 4677899999999999986 48999999999999
Q ss_pred EEEeCCCCc--eeeeecCCCCCeEEEEEecC--CCEEEEEECCCcEEEEECCCCee---EEEecccCCceEEEEEcCC--
Q 005096 211 KYWQNNMNN--VKANKSAHKESVRDLSFCRT--DLKFCSCSDDTTVKVWDFARCQE---ERSLTGHGWDVKSVDWHPT-- 281 (715)
Q Consensus 211 ~iwd~~~~~--~~~~~~~h~~~I~~l~~spd--~~~Las~s~Dg~V~iwdl~~~~~---~~~l~~~~~~I~si~~spd-- 281 (715)
+|||++++. ....+..|...|.+++|+++ +.+|++++.|++|++||+++... ...+..|...|.+++|+++
T Consensus 84 ~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 163 (316)
T 3bg1_A 84 IIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVV 163 (316)
T ss_dssp EEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCC
T ss_pred EEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccC
Confidence 999998863 55667789999999999997 78999999999999999976532 3456678889999999987
Q ss_pred ---------------CCEEEEEeCCCcEEEEECCCC---ceeEEeccCCCceEEEEEcCCC----CEEEEEECCCeEEEE
Q 005096 282 ---------------KSLLVSGGKDSLVKLWDAKSG---RELCSFHGHKNMVLCVKWNQNG----NWVLTASKDQIIKLY 339 (715)
Q Consensus 282 ---------------g~~L~sgs~Dg~I~iwDl~s~---~~~~~~~~~~~~I~sl~~spdg----~~Lasgs~dg~I~iw 339 (715)
+++|++++.|+.|+|||+++. +.+..+.+|...|.+++|++++ ++|++++.|++|+||
T Consensus 164 ~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw 243 (316)
T 3bg1_A 164 PGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIW 243 (316)
T ss_dssp C------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEE
T ss_pred CccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEE
Confidence 468999999999999999865 4566788899999999999986 899999999999999
Q ss_pred ECCCC---e-EEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCC
Q 005096 340 DIRAM---K-ELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHE 387 (715)
Q Consensus 340 Dl~t~---~-~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~ 387 (715)
|+++. + ....+..|...|.+++|++ ++.+|++++.|+.|+||+....
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~v~~v~~sp-~g~~las~~~D~~v~lw~~~~~ 294 (316)
T 3bg1_A 244 TCDDASSNTWSPKLLHKFNDVVWHVSWSI-TANILAVSGGDNKVTLWKESVD 294 (316)
T ss_dssp ECSSTTCCCCBCCEEEECSSCEEEEEECT-TTCCEEEEESSSCEEEEEECTT
T ss_pred EccCccccchhhhhhhcCCCcEEEEEEcC-CCCEEEEEcCCCeEEEEEECCC
Confidence 99762 1 2344567889999999999 7899999999999999997543
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-35 Score=319.99 Aligned_cols=292 Identities=14% Similarity=0.195 Sum_probs=251.2
Q ss_pred CCCcccchhhhhcccccccceEeeehhhheeeEEEEEeccCCCccccccCchhhhcCccceeecCCCCCceeeeEEEEec
Q 005096 61 YDAHGDSFAAKRMRKLTQRRAVDYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSFAAKFVHTSL 140 (715)
Q Consensus 61 ~~~h~~~~~~~r~~~~~~~~~~~~~~~~~~~~~irvW~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l 140 (715)
+.+|...+.+..+.. +++.+...+..|++|+....+.... . .....+
T Consensus 12 ~~~h~~~i~~~~~~~-------~~l~s~~~dg~i~iw~~~~~~~~~~----------~----------------~~~~~~ 58 (397)
T 1sq9_A 12 GKAHDADIFSVSACN-------SFTVSCSGDGYLKVWDNKLLDNENP----------K----------------DKSYSH 58 (397)
T ss_dssp SSCSSSCEEEEEECS-------SEEEEEETTSEEEEEESBCCTTCCG----------G----------------GGEEEE
T ss_pred hhhhhcCeEEEEecC-------CeEEEEcCCCEEEEEECCCcccccC----------C----------------CcceEE
Confidence 456666666655532 5667777889999999865441110 0 011245
Q ss_pred CCCCccEEEEEEcCC----C---CEEEEEeCCCeEEEEeCCCCce-----EEEEecc-----CCCEEEEEEc----CCCC
Q 005096 141 NKNRCSINRVLWTPT----G---RRLITGSQSGEFTLWNGQSFNF-----EMILQAH-----DHAIRSMVWS----HNDN 199 (715)
Q Consensus 141 ~~H~~~I~~l~~spd----g---~~Latgs~dg~I~Iwd~~~~~~-----~~~l~~h-----~~~V~~l~~s----pdg~ 199 (715)
.+|...|++++|+++ + ++|++++.||.|+|||+.+.+. ...+..| ...|.+++|+ ++++
T Consensus 59 ~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 138 (397)
T 1sq9_A 59 FVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLS 138 (397)
T ss_dssp ECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----C
T ss_pred ecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCc
Confidence 589999999999999 9 9999999999999999998887 8888888 5999999999 9999
Q ss_pred E-EEEEeCCCcEEEEeCCC------Cceee-----ee-------cCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCC
Q 005096 200 W-MVSGDDGGAIKYWQNNM------NNVKA-----NK-------SAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARC 260 (715)
Q Consensus 200 ~-L~tgs~dg~I~iwd~~~------~~~~~-----~~-------~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~ 260 (715)
+ |++++.||.|++||+.+ ++.+. .+ ..|...|.+++|++++ +|++++.|+.|++||+++.
T Consensus 139 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~ 217 (397)
T 1sq9_A 139 HRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTL 217 (397)
T ss_dssp EEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTT
T ss_pred eEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCC
Confidence 9 99999999999999988 55544 55 4588899999999999 9999999999999999999
Q ss_pred eeEEEecc---c---CCceEEEEEcCCCCEEEEEeCC---CcEEEEECCCCceeEEecc-------------CCCceEEE
Q 005096 261 QEERSLTG---H---GWDVKSVDWHPTKSLLVSGGKD---SLVKLWDAKSGRELCSFHG-------------HKNMVLCV 318 (715)
Q Consensus 261 ~~~~~l~~---~---~~~I~si~~spdg~~L~sgs~D---g~I~iwDl~s~~~~~~~~~-------------~~~~I~sl 318 (715)
+.+..+.. | ...|.+++|++++++|++++.| +.|++||+++++.+..+.. |...|.++
T Consensus 218 ~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 297 (397)
T 1sq9_A 218 RPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSL 297 (397)
T ss_dssp EEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEE
T ss_pred ceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEE
Confidence 99999998 8 9999999999999999999999 9999999999999999988 99999999
Q ss_pred EEcCCCCEEEEEECCCeEEEEECCCCeEEEEee------cC---------------CCCeEEEEEccCCC----------
Q 005096 319 KWNQNGNWVLTASKDQIIKLYDIRAMKELESFR------GH---------------RKDVTALAWHPFHE---------- 367 (715)
Q Consensus 319 ~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~------~h---------------~~~V~~l~~sp~~~---------- 367 (715)
+|++++++|++++.|+.|+|||+++++.+..+. .| ...|++++|++ ++
T Consensus 298 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~-~g~~~~~~~~~~ 376 (397)
T 1sq9_A 298 SFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLK-KGWRSGMGADLN 376 (397)
T ss_dssp EECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEEC-TTTSBSTTCTTS
T ss_pred EECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEecc-cccccccccccc
Confidence 999999999999999999999999999999999 78 99999999999 54
Q ss_pred CEEEEEeCCCcEEEEEcCCC
Q 005096 368 EYFVSGSLDGSIFHWLVGHE 387 (715)
Q Consensus 368 ~~l~sgs~DG~I~iwd~~~~ 387 (715)
.+|++++.||.|++||++++
T Consensus 377 ~~l~s~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 377 ESLCCVCLDRSIRWFREAGG 396 (397)
T ss_dssp CEEEEEETTTEEEEEEEEC-
T ss_pred ceEEEecCCCcEEEEEcCCC
Confidence 79999999999999998764
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-35 Score=342.69 Aligned_cols=291 Identities=26% Similarity=0.425 Sum_probs=245.8
Q ss_pred CCCcccchhhhhcccccccceEeeehhhheeeEEEEEeccCCCccccccCchhhhcCccceeecCCCCCceeeeEEEEec
Q 005096 61 YDAHGDSFAAKRMRKLTQRRAVDYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSFAAKFVHTSL 140 (715)
Q Consensus 61 ~~~h~~~~~~~r~~~~~~~~~~~~~~~~~~~~~irvW~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l 140 (715)
+.+|.+.+.+..+.. ...+++.+...+.+|++|++...+... ......+
T Consensus 378 l~~H~~~V~~v~~~~----~~~~~l~s~s~D~~i~~W~~~~~~~~~---------------------------~~~~~~~ 426 (694)
T 3dm0_A 378 MRAHTDMVTAIATPI----DNADIIVSASRDKSIILWKLTKDDKAY---------------------------GVAQRRL 426 (694)
T ss_dssp EECCSSCEEEEECCT----TCCSEEEEEETTSEEEEEECCCSTTCS---------------------------CEEEEEE
T ss_pred cccCCceeEEEEecC----CCCCEEEEEeCCCcEEEEEccCCCccc---------------------------cccccee
Confidence 456666665544322 123467778889999999876432110 1123457
Q ss_pred CCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCce
Q 005096 141 NKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNV 220 (715)
Q Consensus 141 ~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~ 220 (715)
.+|...|++++|++++++|++|+.||+|+|||+.+++.+..+.+|...|.+++|++++++|++++.|++|+|||+.....
T Consensus 427 ~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~ 506 (694)
T 3dm0_A 427 TGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECK 506 (694)
T ss_dssp ECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEE
T ss_pred cCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999876543
Q ss_pred eeee---cCCCCCeEEEEEecCC--CEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEE
Q 005096 221 KANK---SAHKESVRDLSFCRTD--LKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVK 295 (715)
Q Consensus 221 ~~~~---~~h~~~I~~l~~spd~--~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~ 295 (715)
.... ..|...|.+++|++++ ..|++++.|++|+|||+++.+....+.+|...|++++|++++++|++++.|+.|+
T Consensus 507 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~ 586 (694)
T 3dm0_A 507 YTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVL 586 (694)
T ss_dssp EEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCE
T ss_pred eeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEE
Confidence 3322 4688899999999986 6899999999999999999999999999999999999999999999999999999
Q ss_pred EEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCC-------------------CC
Q 005096 296 LWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHR-------------------KD 356 (715)
Q Consensus 296 iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~-------------------~~ 356 (715)
|||+++++.+..+. +...|.+++|++++.+|++++ ++.|+|||+++++.+..+..+. ..
T Consensus 587 iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 664 (694)
T 3dm0_A 587 LWDLAEGKKLYSLE-ANSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIY 664 (694)
T ss_dssp EEETTTTEEEECCB-CSSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCC
T ss_pred EEECCCCceEEEec-CCCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEE
Confidence 99999999887776 456799999999998887765 6679999999999887775332 13
Q ss_pred eEEEEEccCCCCEEEEEeCCCcEEEEEcC
Q 005096 357 VTALAWHPFHEEYFVSGSLDGSIFHWLVG 385 (715)
Q Consensus 357 V~~l~~sp~~~~~l~sgs~DG~I~iwd~~ 385 (715)
+++++|++ ++++|++|+.||.|+|||+.
T Consensus 665 ~~~l~~sp-dg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 665 CTSLNWSA-DGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp EEEEEECT-TSSEEEEEETTSEEEEEEC-
T ss_pred eeeEEEcC-CCCEEEEEcCCCeEEEEecc
Confidence 78999999 89999999999999999985
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-34 Score=350.14 Aligned_cols=284 Identities=12% Similarity=0.157 Sum_probs=231.6
Q ss_pred CCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcee
Q 005096 142 KNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVK 221 (715)
Q Consensus 142 ~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~ 221 (715)
.|...|++|+|++ +++|++++.|++|+|||+.+++.+..+. |...|++++|++++++|++|+.||.|++||++++++.
T Consensus 56 ~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~ 133 (902)
T 2oaj_A 56 EDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLS 133 (902)
T ss_dssp SSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEE
T ss_pred CCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccc
Confidence 4788999999999 8899999999999999999999888886 6789999999999999999999999999999987753
Q ss_pred -----------eeecCCCCCeEEEEEecC-CCEEEEEECCCcEEEEECCCCeeEEEeccc------------------CC
Q 005096 222 -----------ANKSAHKESVRDLSFCRT-DLKFCSCSDDTTVKVWDFARCQEERSLTGH------------------GW 271 (715)
Q Consensus 222 -----------~~~~~h~~~I~~l~~spd-~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~------------------~~ 271 (715)
..+..|...|.+++|+++ +..|++++.|+.| +||+++.+.+..+..| ..
T Consensus 134 ~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~ 212 (902)
T 2oaj_A 134 SFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTP 212 (902)
T ss_dssp EEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCC
T ss_pred cceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCC
Confidence 234678899999999996 4789999999999 9999999888887655 46
Q ss_pred ceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEE--ec---c-------------CCCceEEEEE-------------
Q 005096 272 DVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCS--FH---G-------------HKNMVLCVKW------------- 320 (715)
Q Consensus 272 ~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~--~~---~-------------~~~~I~sl~~------------- 320 (715)
.|++++|++++++|++++.|+.|+|||+++++++.. +. . +...|++++|
T Consensus 213 ~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~ 292 (902)
T 2oaj_A 213 KVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLI 292 (902)
T ss_dssp CEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEE
T ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEE
Confidence 799999999999999999999999999977654321 10 0 0111222222
Q ss_pred --------------------------------------------------------------------------------
Q 005096 321 -------------------------------------------------------------------------------- 320 (715)
Q Consensus 321 -------------------------------------------------------------------------------- 320 (715)
T Consensus 293 sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~ 372 (902)
T 2oaj_A 293 SHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILG 372 (902)
T ss_dssp EEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEET
T ss_pred eCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcC
Confidence
Q ss_pred -----------------------------------------------------------------------cCCCCEEEE
Q 005096 321 -----------------------------------------------------------------------NQNGNWVLT 329 (715)
Q Consensus 321 -----------------------------------------------------------------------spdg~~Las 329 (715)
++++++|++
T Consensus 373 dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laS 452 (902)
T 2oaj_A 373 NGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFIT 452 (902)
T ss_dssp TSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEE
T ss_pred CCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEE
Confidence 344566777
Q ss_pred EECCCeEEEEECCCCeEE----EE--ee-----cCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCC----------
Q 005096 330 ASKDQIIKLYDIRAMKEL----ES--FR-----GHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHET---------- 388 (715)
Q Consensus 330 gs~dg~I~iwDl~t~~~~----~~--~~-----~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~---------- 388 (715)
|+.|++|++||+.++... .. +. +|...|++|+|+| ++++||+|+.||+|+|||+.+.+
T Consensus 453 gs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafsp-dg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~ 531 (902)
T 2oaj_A 453 GHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAA-ETLELAVSIETGDVVLFKYEVNQFYSVENRPES 531 (902)
T ss_dssp EETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEET-TTTEEEEEETTSCEEEEEEEECCC---------
T ss_pred ecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecC-CCCeEEEEecCcEEEEEEecCccccCccccCCC
Confidence 777777777777665321 11 11 6788999999999 89999999999999999997652
Q ss_pred ----------------------------------ceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCCC
Q 005096 389 ----------------------------------PQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRP 430 (715)
Q Consensus 389 ----------------------------------~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~ 430 (715)
.....+..|.+.|++|+|++|| +||+|+.|++|+|||++..
T Consensus 532 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~ 606 (902)
T 2oaj_A 532 GDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGP 606 (902)
T ss_dssp ------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTT
T ss_pred cccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCC
Confidence 1244566799999999999999 9999999999999998543
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-34 Score=344.70 Aligned_cols=331 Identities=18% Similarity=0.294 Sum_probs=278.1
Q ss_pred CCCcccchhhhhcccccccceEeeehhhheeeEEEEEeccCCCccccccCchhhhcCccceeecCCCCCceeeeEEEEec
Q 005096 61 YDAHGDSFAAKRMRKLTQRRAVDYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSFAAKFVHTSL 140 (715)
Q Consensus 61 ~~~h~~~~~~~r~~~~~~~~~~~~~~~~~~~~~irvW~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l 140 (715)
+.+|...+.+..+.. ...++.+...++.|++|+..... ....+
T Consensus 9 ~~~h~~~v~~i~~sp-----~~~~la~~~~~g~v~iwd~~~~~--------------------------------~~~~~ 51 (814)
T 3mkq_A 9 FSNRSDRVKGIDFHP-----TEPWVLTTLYSGRVEIWNYETQV--------------------------------EVRSI 51 (814)
T ss_dssp EEEECSCEEEEEECS-----SSSEEEEEETTSEEEEEETTTTE--------------------------------EEEEE
T ss_pred eecCCCceEEEEECC-----CCCEEEEEeCCCEEEEEECCCCc--------------------------------eEEEE
Confidence 344555554444433 23445555567889999864322 12345
Q ss_pred CCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC-c
Q 005096 141 NKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN-N 219 (715)
Q Consensus 141 ~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~-~ 219 (715)
.+|...|++++|++++++|++++.||.|+|||+.+++.+..+..|...|++++|++++++|++++.||.|++||+.++ .
T Consensus 52 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~ 131 (814)
T 3mkq_A 52 QVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWA 131 (814)
T ss_dssp ECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSE
T ss_pred ecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCce
Confidence 689999999999999999999999999999999999999999999999999999999999999999999999999887 6
Q ss_pred eeeeecCCCCCeEEEEEec-CCCEEEEEECCCcEEEEECCCCeeEEEecccC-CceEEEEEcC--CCCEEEEEeCCCcEE
Q 005096 220 VKANKSAHKESVRDLSFCR-TDLKFCSCSDDTTVKVWDFARCQEERSLTGHG-WDVKSVDWHP--TKSLLVSGGKDSLVK 295 (715)
Q Consensus 220 ~~~~~~~h~~~I~~l~~sp-d~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~-~~I~si~~sp--dg~~L~sgs~Dg~I~ 295 (715)
....+..|...|.+++|++ +++.|++++.|++|++||+.+.+....+..+. ..|.+++|++ ++++|++++.|+.|+
T Consensus 132 ~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~ 211 (814)
T 3mkq_A 132 LEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIK 211 (814)
T ss_dssp EEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEE
T ss_pred EEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEE
Confidence 6777888999999999999 88899999999999999998887777776554 8899999999 999999999999999
Q ss_pred EEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeC
Q 005096 296 LWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSL 375 (715)
Q Consensus 296 iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~ 375 (715)
+||+++++.+..+..|...|++++|++++++|++++.||.|++||+.+++.+..+..+...|.+++|++++..++++++.
T Consensus 212 ~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 291 (814)
T 3mkq_A 212 IWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGF 291 (814)
T ss_dssp EEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEE
T ss_pred EEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999955554444455
Q ss_pred CCcEEEEEcCCCCceEEE------------------------------------------eeccCCCEEEEEEcCCCCEE
Q 005096 376 DGSIFHWLVGHETPQVEI------------------------------------------HNVHDNTVWDLAWHPIGYLL 413 (715)
Q Consensus 376 DG~I~iwd~~~~~~~~~~------------------------------------------~~~h~~~V~~l~~spdg~~L 413 (715)
++.+.+|++........+ ...+...+.+++|++++++|
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l 371 (814)
T 3mkq_A 292 DNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFV 371 (814)
T ss_dssp TTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEE
T ss_pred CCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECCCCCEE
Confidence 677888887654322211 12234467899999999999
Q ss_pred EEEECCCeEEEEecCC
Q 005096 414 CSGSNDHTTKFWCRNR 429 (715)
Q Consensus 414 ~sgs~Dg~I~iWdl~~ 429 (715)
++++ |+.+.+|++..
T Consensus 372 a~~~-~~~~~i~~~~~ 386 (814)
T 3mkq_A 372 TVVG-DGEYVIYTALA 386 (814)
T ss_dssp EEEE-TTEEEEEETTT
T ss_pred EEec-CCEEEEEECcc
Confidence 9998 89999999753
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-34 Score=301.33 Aligned_cols=294 Identities=23% Similarity=0.406 Sum_probs=250.9
Q ss_pred CCCcccchhhhhcccccccceEeeehhhheeeEEEEEeccCCCccccccCchhhhcCccceeecCCCCCceeeeEEEEec
Q 005096 61 YDAHGDSFAAKRMRKLTQRRAVDYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSFAAKFVHTSL 140 (715)
Q Consensus 61 ~~~h~~~~~~~r~~~~~~~~~~~~~~~~~~~~~irvW~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l 140 (715)
+.+|...|.+..+... ..+++.+...|.+|++|++...+... ......+
T Consensus 34 L~GH~~~V~~v~~sp~----~~~~l~S~s~D~~i~vWd~~~~~~~~---------------------------~~~~~~l 82 (340)
T 4aow_A 34 LKGHNGWVTQIATTPQ----FPDMILSASRDKTIIMWKLTRDETNY---------------------------GIPQRAL 82 (340)
T ss_dssp ECCCSSCEEEEEECTT----CTTEEEEEETTSCEEEEEECCSSSCS---------------------------EEEEEEE
T ss_pred ECCccCCEEEEEEeCC----CCCEEEEEcCCCeEEEEECCCCCccc---------------------------ceeeEEE
Confidence 5678777777655431 12466777889999999976443111 1123467
Q ss_pred CCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCce
Q 005096 141 NKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNV 220 (715)
Q Consensus 141 ~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~ 220 (715)
.+|...|++++|++++++|++++.|+.|++|+............+...+..+.+++++++|++++.|+.+++||+.....
T Consensus 83 ~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~ 162 (340)
T 4aow_A 83 RGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCK 162 (340)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEE
T ss_pred eCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCce
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999876543
Q ss_pred -eeeecCCCCCeEEEEEecCC--CEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEE
Q 005096 221 -KANKSAHKESVRDLSFCRTD--LKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLW 297 (715)
Q Consensus 221 -~~~~~~h~~~I~~l~~spd~--~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iw 297 (715)
......|...|.+++|+.++ .++++++.|+.|++||+++.+.+..+.+|...|++++|++++++|++++.|+.|+||
T Consensus 163 ~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iw 242 (340)
T 4aow_A 163 YTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLW 242 (340)
T ss_dssp EEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEE
T ss_pred EEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEE
Confidence 44556789999999998764 578899999999999999999999999999999999999999999999999999999
Q ss_pred ECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEee---------cCCCCeEEEEEccCCCC
Q 005096 298 DAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFR---------GHRKDVTALAWHPFHEE 368 (715)
Q Consensus 298 Dl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~---------~h~~~V~~l~~sp~~~~ 368 (715)
|+++.+.+..+.. ...|.+++|++++.+ ++++.|+.|+|||++++..+..+. .|...|++++|++ +++
T Consensus 243 d~~~~~~~~~~~~-~~~v~~~~~~~~~~~-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~-dg~ 319 (340)
T 4aow_A 243 DLNEGKHLYTLDG-GDIINALCFSPNRYW-LCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSA-DGQ 319 (340)
T ss_dssp ETTTTEEEEEEEC-SSCEEEEEECSSSSE-EEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECT-TSS
T ss_pred EeccCceeeeecC-CceEEeeecCCCCce-eeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECC-CCC
Confidence 9999999888874 567999999998765 455679999999999888776654 5788999999999 889
Q ss_pred EEEEEeCCCcEEEEEcCCCC
Q 005096 369 YFVSGSLDGSIFHWLVGHET 388 (715)
Q Consensus 369 ~l~sgs~DG~I~iwd~~~~~ 388 (715)
+|++|+.||.|+|||++++.
T Consensus 320 ~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 320 TLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp EEEEEETTSCEEEEEEEC--
T ss_pred EEEEEeCCCEEEEEeCCCcC
Confidence 99999999999999998764
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-34 Score=329.82 Aligned_cols=283 Identities=17% Similarity=0.238 Sum_probs=258.5
Q ss_pred CCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC----ceEEEEeccCCC-EEEEEEcC--CCCEEEEEeCCCcEEEE
Q 005096 141 NKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSF----NFEMILQAHDHA-IRSMVWSH--NDNWMVSGDDGGAIKYW 213 (715)
Q Consensus 141 ~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~----~~~~~l~~h~~~-V~~l~~sp--dg~~L~tgs~dg~I~iw 213 (715)
..|.+.|++++|++|+++|++++ ++.|+|||+.++ +....+.+|... |++++|++ ++++|++++.||.|+||
T Consensus 15 ~~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw 93 (615)
T 1pgu_A 15 STQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVW 93 (615)
T ss_dssp CCCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEE
T ss_pred CCccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEE
Confidence 46899999999999999999998 789999999998 899999999999 99999999 99999999999999999
Q ss_pred eCCCC--------ceeeeecCCCCCeEEEEEecCCCEEEEEECC----CcEEEEECCCCeeEEEecccCCceEEEEEcCC
Q 005096 214 QNNMN--------NVKANKSAHKESVRDLSFCRTDLKFCSCSDD----TTVKVWDFARCQEERSLTGHGWDVKSVDWHPT 281 (715)
Q Consensus 214 d~~~~--------~~~~~~~~h~~~I~~l~~spd~~~Las~s~D----g~V~iwdl~~~~~~~~l~~~~~~I~si~~spd 281 (715)
|+.++ .....+..|...|.+++|++++++|++++.+ +.|++|| .++.+..+..|...|.+++|+++
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~~~~~~~~ 171 (615)
T 1pgu_A 94 GWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQRINACHLKQS 171 (615)
T ss_dssp EEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSCEEEEEECSS
T ss_pred eCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceeeecCCccEEEEEECCC
Confidence 99744 6667778899999999999999999999988 6888888 56678888999999999999999
Q ss_pred CC-EEEEEeCCCcEEEEECCCCceeEEeccCCC---ceEEEEEcCC-CCEEEEEECCCeEEEEECCCCeEEEEe-e---c
Q 005096 282 KS-LLVSGGKDSLVKLWDAKSGRELCSFHGHKN---MVLCVKWNQN-GNWVLTASKDQIIKLYDIRAMKELESF-R---G 352 (715)
Q Consensus 282 g~-~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~---~I~sl~~spd-g~~Lasgs~dg~I~iwDl~t~~~~~~~-~---~ 352 (715)
++ +|++++.|+.|++||+++++.+..+..|.. .|++++|+++ +++|++++.|+.|++||+++++.+..+ . .
T Consensus 172 ~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~ 251 (615)
T 1pgu_A 172 RPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEP 251 (615)
T ss_dssp SSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBC
T ss_pred CCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccc
Confidence 98 899999999999999999999999999998 9999999999 999999999999999999999999999 6 8
Q ss_pred CCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeec---cCCCEEEEEEcCCCCEEEEEECCCeEEEEecCC
Q 005096 353 HRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNV---HDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNR 429 (715)
Q Consensus 353 h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~---h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~ 429 (715)
|...|.+++|+ ++.+|++++.|+.|++||+++......+... +...+.++.|. ++.+|++++.||.|++||+..
T Consensus 252 ~~~~v~~~~~~--~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~ 328 (615)
T 1pgu_A 252 VQGGIFALSWL--DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGH 328 (615)
T ss_dssp CCSCEEEEEES--SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTE
T ss_pred cCCceEEEEEc--CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC-CCCeEEEEECCCCEEEEECCC
Confidence 99999999999 7899999999999999999887665554432 24678899997 889999999999999999865
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-35 Score=312.87 Aligned_cols=251 Identities=20% Similarity=0.360 Sum_probs=212.9
Q ss_pred EEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc--eeeeecCCCCCeEEEEEec--CCCEEEEEECCCcEEEEE
Q 005096 181 ILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNN--VKANKSAHKESVRDLSFCR--TDLKFCSCSDDTTVKVWD 256 (715)
Q Consensus 181 ~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~--~~~~~~~h~~~I~~l~~sp--d~~~Las~s~Dg~V~iwd 256 (715)
.+.+|.+.|++++|++++++|++|+.|++|+|||+.++. .+..+.+|...|.+++|++ ++++|++++.|++|+|||
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd 87 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR 87 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEEC
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEE
Confidence 456899999999999999999999999999999998764 4567889999999999985 488999999999999999
Q ss_pred CCCC--eeEEEecccCCceEEEEEcCC--CCEEEEEeCCCcEEEEECCCCce---eEEeccCCCceEEEEEcCC------
Q 005096 257 FARC--QEERSLTGHGWDVKSVDWHPT--KSLLVSGGKDSLVKLWDAKSGRE---LCSFHGHKNMVLCVKWNQN------ 323 (715)
Q Consensus 257 l~~~--~~~~~l~~~~~~I~si~~spd--g~~L~sgs~Dg~I~iwDl~s~~~---~~~~~~~~~~I~sl~~spd------ 323 (715)
++++ +....+.+|...|++++|+++ +.+|++++.|+.|++||++++.. ...+..|...|.+++|+++
T Consensus 88 ~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~ 167 (316)
T 3bg1_A 88 EENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSL 167 (316)
T ss_dssp CSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC---
T ss_pred CCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccc
Confidence 9876 356677889999999999998 78999999999999999987642 3445678889999999987
Q ss_pred -----------CCEEEEEECCCeEEEEECCCC---eEEEEeecCCCCeEEEEEccCC---CCEEEEEeCCCcEEEEEcCC
Q 005096 324 -----------GNWVLTASKDQIIKLYDIRAM---KELESFRGHRKDVTALAWHPFH---EEYFVSGSLDGSIFHWLVGH 386 (715)
Q Consensus 324 -----------g~~Lasgs~dg~I~iwDl~t~---~~~~~~~~h~~~V~~l~~sp~~---~~~l~sgs~DG~I~iwd~~~ 386 (715)
+++|++++.|+.|+|||+++. +.+..+.+|...|.+++|++++ +.+|++++.|++|+|||++.
T Consensus 168 ~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~ 247 (316)
T 3bg1_A 168 IDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDD 247 (316)
T ss_dssp ---CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSS
T ss_pred cccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccC
Confidence 478999999999999999765 5677888999999999999943 38999999999999999976
Q ss_pred C---CceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCCCC
Q 005096 387 E---TPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPG 431 (715)
Q Consensus 387 ~---~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~ 431 (715)
. ......+..|...|++++|++++.+|++++.|++|+||+.+..+
T Consensus 248 ~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~~g 295 (316)
T 3bg1_A 248 ASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESVDG 295 (316)
T ss_dssp TTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEECTTS
T ss_pred ccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEECCCC
Confidence 2 22223445688999999999999999999999999999986543
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-34 Score=306.95 Aligned_cols=285 Identities=17% Similarity=0.190 Sum_probs=242.5
Q ss_pred EecCCCCccEEEEEEcCC---CCEEEEEeCCCeEEEEeCCC-CceE-EEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEE
Q 005096 138 TSLNKNRCSINRVLWTPT---GRRLITGSQSGEFTLWNGQS-FNFE-MILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKY 212 (715)
Q Consensus 138 ~~l~~H~~~I~~l~~spd---g~~Latgs~dg~I~Iwd~~~-~~~~-~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~i 212 (715)
..+.+|.+.|++++|+++ |++|++|+.||.|+|||+++ ++.+ ..+..|...|++++|++++++|++++.||.|+|
T Consensus 33 ~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~i 112 (368)
T 3mmy_A 33 EVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKM 112 (368)
T ss_dssp ECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred EeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEE
Confidence 367899999999999999 69999999999999999987 4444 788899999999999999999999999999999
Q ss_pred EeCCCCceeeeecCCCCCeEEEEE--ecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeC
Q 005096 213 WQNNMNNVKANKSAHKESVRDLSF--CRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGK 290 (715)
Q Consensus 213 wd~~~~~~~~~~~~h~~~I~~l~~--spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~ 290 (715)
||+++++... +..|...|.+++| ++++++|++++.|+.|++||+++++.+..+..+. .+.++.+. ...+++++.
T Consensus 113 wd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~ 188 (368)
T 3mmy_A 113 WDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE-RCYCADVI--YPMAVVATA 188 (368)
T ss_dssp EETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS-CEEEEEEE--TTEEEEEEG
T ss_pred EEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC-CceEEEec--CCeeEEEeC
Confidence 9999988766 4579999999999 8899999999999999999999998888887654 66677776 458889999
Q ss_pred CCcEEEEECCCCceeEEec--cCCCceEEEEEcCCCCE----EEEEECCCeEEEEECCCC---eEEEEeecCCC------
Q 005096 291 DSLVKLWDAKSGRELCSFH--GHKNMVLCVKWNQNGNW----VLTASKDQIIKLYDIRAM---KELESFRGHRK------ 355 (715)
Q Consensus 291 Dg~I~iwDl~s~~~~~~~~--~~~~~I~sl~~spdg~~----Lasgs~dg~I~iwDl~t~---~~~~~~~~h~~------ 355 (715)
|+.+++||++......... .....+.++++..+... |++++.|+.|++||++.. +.+..+..|..
T Consensus 189 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (368)
T 3mmy_A 189 ERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTS 268 (368)
T ss_dssp GGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----C
T ss_pred CCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeeccccccc
Confidence 9999999998765443332 23445666666655544 999999999999999987 55777777776
Q ss_pred ------CeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecC
Q 005096 356 ------DVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRN 428 (715)
Q Consensus 356 ------~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~ 428 (715)
.|++++|++ ++++|++++.||.|++||+++...+ ..+..|...|++++|++++.+|++++.|+..+.|++.
T Consensus 269 ~~~~~~~v~~~~~sp-~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~ 345 (368)
T 3mmy_A 269 APQDIYAVNGIAFHP-VHGTLATVGSDGRFSFWDKDARTKL-KTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFY 345 (368)
T ss_dssp CCEEECCEEEEEECT-TTCCEEEEETTSCEEEEETTTTEEE-EECCCCSSCEEEEEECTTSSCEEEEECCCSTTCGGGC
T ss_pred ccccccceEEEEEec-CCCEEEEEccCCeEEEEECCCCcEE-EEecCCCCCceEEEECCCCCeEEEEeccccccccccc
Confidence 799999999 7889999999999999999876654 4455789999999999999999999999876666654
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-35 Score=311.49 Aligned_cols=242 Identities=15% Similarity=0.266 Sum_probs=219.5
Q ss_pred CCCCccEEEEEEcCC----CCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcC-CCCEEEEEeCCCcEEEEeC
Q 005096 141 NKNRCSINRVLWTPT----GRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSH-NDNWMVSGDDGGAIKYWQN 215 (715)
Q Consensus 141 ~~H~~~I~~l~~spd----g~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~sp-dg~~L~tgs~dg~I~iwd~ 215 (715)
..|...|++++|+++ +++|++|+.||.|+|||+.+++.+..+..|...|.+++|++ ++++|++++.||.|+|||+
T Consensus 66 ~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~ 145 (366)
T 3k26_A 66 ADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNI 145 (366)
T ss_dssp SCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEET
T ss_pred cCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEe
Confidence 358899999999999 67999999999999999999999999999999999999999 8999999999999999999
Q ss_pred CCCceeeee---cCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEec-------------------------
Q 005096 216 NMNNVKANK---SAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLT------------------------- 267 (715)
Q Consensus 216 ~~~~~~~~~---~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~------------------------- 267 (715)
++++....+ ..|...|.+++|++++++|++++.|+.|++||+++.+....+.
T Consensus 146 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (366)
T 3k26_A 146 QTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFS 225 (366)
T ss_dssp TTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEE
T ss_pred ecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccc
Confidence 999888877 6899999999999999999999999999999998765544333
Q ss_pred ---ccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCce--------------eEEeccCCCceEEEEEcCC--CCEEE
Q 005096 268 ---GHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRE--------------LCSFHGHKNMVLCVKWNQN--GNWVL 328 (715)
Q Consensus 268 ---~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~--------------~~~~~~~~~~I~sl~~spd--g~~La 328 (715)
.|...|.+++|+ +++|++++.|+.|++||+++++. +..+..|...|++++|+++ +++|+
T Consensus 226 ~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~ 303 (366)
T 3k26_A 226 TRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLA 303 (366)
T ss_dssp ECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEE
T ss_pred cccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEE
Confidence 388999999999 78999999999999999987654 6777888999999999999 99999
Q ss_pred EEECCCeEEEEECCCCe----EEEEeecC--CCCeEEEEEccCCCCEEEEEeCCCcEEEEEcC
Q 005096 329 TASKDQIIKLYDIRAMK----ELESFRGH--RKDVTALAWHPFHEEYFVSGSLDGSIFHWLVG 385 (715)
Q Consensus 329 sgs~dg~I~iwDl~t~~----~~~~~~~h--~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~ 385 (715)
+++.||.|+|||+++++ .+..+..| ...|++++|++ ++++|++++.||.|+|||+.
T Consensus 304 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 304 LGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSR-DSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp EECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECT-TSSEEEEEETTSEEEEEEC-
T ss_pred EEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCC-CCCeEEEEeCCCEEEEEEec
Confidence 99999999999999875 34477777 78999999999 89999999999999999985
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-33 Score=310.02 Aligned_cols=260 Identities=20% Similarity=0.356 Sum_probs=221.5
Q ss_pred CCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCC-CCce
Q 005096 142 KNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNN-MNNV 220 (715)
Q Consensus 142 ~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~-~~~~ 220 (715)
.|...|++++|++++++|++|+.||.|+|||+.+++.+..+..|...|.+++| ++++|++++.||.|++||++ ....
T Consensus 132 ~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~ 209 (401)
T 4aez_A 132 DESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQ 209 (401)
T ss_dssp CTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCE
T ss_pred CCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcce
Confidence 48899999999999999999999999999999999999999999999999999 56899999999999999998 4567
Q ss_pred eeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCC-EEEEEe--CCCcEEEE
Q 005096 221 KANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKS-LLVSGG--KDSLVKLW 297 (715)
Q Consensus 221 ~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~-~L~sgs--~Dg~I~iw 297 (715)
...+..|...|.+++|++++++|++++.|+.|++||+++.+.+..+..|...|.+++|++++. ++++++ .|+.|++|
T Consensus 210 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~ 289 (401)
T 4aez_A 210 IGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFW 289 (401)
T ss_dssp EEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEE
T ss_pred eeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEE
Confidence 778889999999999999999999999999999999999999999999999999999999775 666654 79999999
Q ss_pred ECCCCceeEEeccCCCceEEEEEcCCCCEEEEEE--CCCeEEEEECCCCeEEE--EeecCCCCeEEEEEccCCCCEEEEE
Q 005096 298 DAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTAS--KDQIIKLYDIRAMKELE--SFRGHRKDVTALAWHPFHEEYFVSG 373 (715)
Q Consensus 298 Dl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs--~dg~I~iwDl~t~~~~~--~~~~h~~~V~~l~~sp~~~~~l~sg 373 (715)
|+++++.+..+. +...|++++|++++++|++++ .|+.|+|||+++++... .+..|...|.+++|++ ++.+|+++
T Consensus 290 d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~-dg~~l~s~ 367 (401)
T 4aez_A 290 NAATGARVNTVD-AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSP-DGRILSTA 367 (401)
T ss_dssp ETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECT-TSSEEEEE
T ss_pred ECCCCCEEEEEe-CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECC-CCCEEEEE
Confidence 999999988886 667899999999999999954 89999999999866544 4678999999999999 89999999
Q ss_pred eCCCcEEEEEcCCCCceEEEeeccCCCEEEEE
Q 005096 374 SLDGSIFHWLVGHETPQVEIHNVHDNTVWDLA 405 (715)
Q Consensus 374 s~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~ 405 (715)
+.||.|++||+.+..........+.....++.
T Consensus 368 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~i~ 399 (401)
T 4aez_A 368 ASDENLKFWRVYDGDHVKRPIPITKTPSSSIT 399 (401)
T ss_dssp CTTSEEEEEECCC-------------------
T ss_pred eCCCcEEEEECCCCccccccccccCCCcccee
Confidence 99999999999888766555444444444443
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-33 Score=300.82 Aligned_cols=288 Identities=13% Similarity=0.178 Sum_probs=249.8
Q ss_pred CCCcccchhhhhcccccccceEeeehhhheeeEEEEEeccCCCccccccCchhhhcCccceeecCCCCCceeeeEEEEec
Q 005096 61 YDAHGDSFAAKRMRKLTQRRAVDYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSFAAKFVHTSL 140 (715)
Q Consensus 61 ~~~h~~~~~~~r~~~~~~~~~~~~~~~~~~~~~irvW~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l 140 (715)
+.+|...+.+..+.. ...++.+...+..|++|+....+ ....+
T Consensus 28 l~~h~~~v~~~~~s~-----~~~~l~~~~~dg~i~vwd~~~~~--------------------------------~~~~~ 70 (369)
T 3zwl_B 28 LTGHERPLTQVKYNK-----EGDLLFSCSKDSSASVWYSLNGE--------------------------------RLGTL 70 (369)
T ss_dssp EECCSSCEEEEEECT-----TSCEEEEEESSSCEEEEETTTCC--------------------------------EEEEE
T ss_pred EEEeeceEEEEEEcC-----CCCEEEEEeCCCEEEEEeCCCch--------------------------------hhhhh
Confidence 455555555544432 23455666677889999865332 12246
Q ss_pred CCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCC-----CcEEEEeC
Q 005096 141 NKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDG-----GAIKYWQN 215 (715)
Q Consensus 141 ~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~d-----g~I~iwd~ 215 (715)
.+|...|++++|++++++|++++.||.|+|||+.+++.+..+. +...|.+++|++++++|++++.+ +.|++||+
T Consensus 71 ~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~ 149 (369)
T 3zwl_B 71 DGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEI 149 (369)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEE
T ss_pred hhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEe
Confidence 6899999999999999999999999999999999999988888 88999999999999999999998 99999998
Q ss_pred CCCc-----------eeeeecCCCC--CeEEEEEecCCCEEEEEECCCcEEEEECCC-CeeEEEecccCCceEEEEEcCC
Q 005096 216 NMNN-----------VKANKSAHKE--SVRDLSFCRTDLKFCSCSDDTTVKVWDFAR-CQEERSLTGHGWDVKSVDWHPT 281 (715)
Q Consensus 216 ~~~~-----------~~~~~~~h~~--~I~~l~~spd~~~Las~s~Dg~V~iwdl~~-~~~~~~l~~~~~~I~si~~spd 281 (715)
.... ....+..+.. .+.+++|++++++|++++.|+.|++||+++ .+.+..+..|...|.+++|+++
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~ 229 (369)
T 3zwl_B 150 ERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPD 229 (369)
T ss_dssp EECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTT
T ss_pred cCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCC
Confidence 7653 2223344554 899999999999999999999999999998 7888889999999999999999
Q ss_pred CCEEEEEeCCCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCC--------------eEEEEECCCCeEE
Q 005096 282 KSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQ--------------IIKLYDIRAMKEL 347 (715)
Q Consensus 282 g~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg--------------~I~iwDl~t~~~~ 347 (715)
+++|++++.|+.|++||+++++.+..+. +...+.+++|++++++|++++.++ .|++||+.+++.+
T Consensus 230 ~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~ 308 (369)
T 3zwl_B 230 LTYFITSSRDTNSFLVDVSTLQVLKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEI 308 (369)
T ss_dssp SSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEE
T ss_pred CCEEEEecCCceEEEEECCCCceeeeec-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcch
Confidence 9999999999999999999999888887 778899999999999999999888 8999999999999
Q ss_pred EEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCC
Q 005096 348 ESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHET 388 (715)
Q Consensus 348 ~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~ 388 (715)
..+..|...|++++|++ ++++|++++.||.|+||+++...
T Consensus 309 ~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~v~iw~~~~~~ 348 (369)
T 3zwl_B 309 GRVQGHFGPLNTVAISP-QGTSYASGGEDGFIRLHHFEKSY 348 (369)
T ss_dssp EEEECCSSCEEEEEECT-TSSEEEEEETTSEEEEEEECHHH
T ss_pred hheecccCcEEEEEECC-CCCEEEEEcCCCeEEEEECcccc
Confidence 99999999999999999 88999999999999999997643
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-34 Score=306.56 Aligned_cols=252 Identities=19% Similarity=0.324 Sum_probs=223.7
Q ss_pred EecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCC--CCceEEEEeccCCCEEEEEEcCC--CCEEEEEeCCCcEEEE
Q 005096 138 TSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQ--SFNFEMILQAHDHAIRSMVWSHN--DNWMVSGDDGGAIKYW 213 (715)
Q Consensus 138 ~~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~--~~~~~~~l~~h~~~V~~l~~spd--g~~L~tgs~dg~I~iw 213 (715)
..+.+|.+.|++++|++++++|++++.||.|+|||+. +.+.+..+..|...|++++|+++ +++|++++.||.|+||
T Consensus 5 ~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iw 84 (379)
T 3jrp_A 5 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIW 84 (379)
T ss_dssp CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEE
T ss_pred EEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEE
Confidence 4578999999999999999999999999999999988 66778889999999999999977 8999999999999999
Q ss_pred eCCCCc--eeeeecCCCCCeEEEEEecC--CCEEEEEECCCcEEEEECCCCe--eEEEecccCCceEEEEEcC-------
Q 005096 214 QNNMNN--VKANKSAHKESVRDLSFCRT--DLKFCSCSDDTTVKVWDFARCQ--EERSLTGHGWDVKSVDWHP------- 280 (715)
Q Consensus 214 d~~~~~--~~~~~~~h~~~I~~l~~spd--~~~Las~s~Dg~V~iwdl~~~~--~~~~l~~~~~~I~si~~sp------- 280 (715)
|+.+++ ....+..|...|.+++|+++ +.+|++++.|+.|++||+++.. ....+..|...|.+++|++
T Consensus 85 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 164 (379)
T 3jrp_A 85 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG 164 (379)
T ss_dssp EEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC-----
T ss_pred EcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccc
Confidence 999886 66777889999999999999 9999999999999999998763 4456678899999999999
Q ss_pred ------CCCEEEEEeCCCcEEEEECCCCc----eeEEeccCCCceEEEEEcCC---CCEEEEEECCCeEEEEECCCCe--
Q 005096 281 ------TKSLLVSGGKDSLVKLWDAKSGR----ELCSFHGHKNMVLCVKWNQN---GNWVLTASKDQIIKLYDIRAMK-- 345 (715)
Q Consensus 281 ------dg~~L~sgs~Dg~I~iwDl~s~~----~~~~~~~~~~~I~sl~~spd---g~~Lasgs~dg~I~iwDl~t~~-- 345 (715)
++++|++++.|+.|++||+++++ .+..+..|...|++++|+++ +++|++++.||.|+|||++++.
T Consensus 165 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 244 (379)
T 3jrp_A 165 EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGP 244 (379)
T ss_dssp -----CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSC
T ss_pred cccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCcc
Confidence 68999999999999999998765 34567789999999999999 8999999999999999999864
Q ss_pred ---EEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCce
Q 005096 346 ---ELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQ 390 (715)
Q Consensus 346 ---~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~ 390 (715)
.+.....+...|++++|++ ++.+|++++.||.|++|+++.....
T Consensus 245 ~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~dg~i~iw~~~~~~~~ 291 (379)
T 3jrp_A 245 WKKTLLKEEKFPDVLWRASWSL-SGNVLALSGGDNKVTLWKENLEGKW 291 (379)
T ss_dssp CEEEESSSSCCSSCEEEEEECS-SSCCEEEEESSSSEEEEEEEETTEE
T ss_pred ceeeeeccccCCCcEEEEEEcC-CCCEEEEecCCCcEEEEeCCCCCcc
Confidence 2222334888999999999 7889999999999999999765443
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-35 Score=318.48 Aligned_cols=281 Identities=18% Similarity=0.273 Sum_probs=239.8
Q ss_pred cEEEEEEcCCCCEEE-EEeCCCeEEEEeCCCC----ceEEEEeccCCCEEEEEEcC-CCCEEEEEeCCCcEEEEeCCCC-
Q 005096 146 SINRVLWTPTGRRLI-TGSQSGEFTLWNGQSF----NFEMILQAHDHAIRSMVWSH-NDNWMVSGDDGGAIKYWQNNMN- 218 (715)
Q Consensus 146 ~I~~l~~spdg~~La-tgs~dg~I~Iwd~~~~----~~~~~l~~h~~~V~~l~~sp-dg~~L~tgs~dg~I~iwd~~~~- 218 (715)
....++++++...++ +++.||.|+|||+.+. +....+.+|...|++++|++ ++++|++++.||.|+|||+.++
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~ 115 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGG 115 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTC
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCC
Confidence 345688888875544 5788999999998664 23456778999999999999 8999999999999999999887
Q ss_pred ------ceeeeecCCCCCeEEEEEecCC-CEEEEEECCCcEEEEECCCCeeEEEe--cccCCceEEEEEcCCCCEEEEEe
Q 005096 219 ------NVKANKSAHKESVRDLSFCRTD-LKFCSCSDDTTVKVWDFARCQEERSL--TGHGWDVKSVDWHPTKSLLVSGG 289 (715)
Q Consensus 219 ------~~~~~~~~h~~~I~~l~~spd~-~~Las~s~Dg~V~iwdl~~~~~~~~l--~~~~~~I~si~~spdg~~L~sgs 289 (715)
+.+..+..|...|.+++|++++ ++|++++.|++|+|||+++++.+..+ ..|...|.+++|++++++|++++
T Consensus 116 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 195 (402)
T 2aq5_A 116 LVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSC 195 (402)
T ss_dssp CSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEE
T ss_pred CccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEe
Confidence 5567788999999999999998 79999999999999999999999999 78999999999999999999999
Q ss_pred CCCcEEEEECCCCceeEEe-ccCCCc-eEEEEEcCCCCEEEEE---ECCCeEEEEECCCCeE-EEEee-cCCCCeEEEEE
Q 005096 290 KDSLVKLWDAKSGRELCSF-HGHKNM-VLCVKWNQNGNWVLTA---SKDQIIKLYDIRAMKE-LESFR-GHRKDVTALAW 362 (715)
Q Consensus 290 ~Dg~I~iwDl~s~~~~~~~-~~~~~~-I~sl~~spdg~~Lasg---s~dg~I~iwDl~t~~~-~~~~~-~h~~~V~~l~~ 362 (715)
.|+.|+|||+++++.+..+ ..|... +.+++|++++++|+++ +.|+.|++||+++++. +.... .+...|.+++|
T Consensus 196 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~ 275 (402)
T 2aq5_A 196 RDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFF 275 (402)
T ss_dssp TTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEE
T ss_pred cCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEE
Confidence 9999999999999999888 677765 8999999999999999 7899999999998765 33333 46778999999
Q ss_pred ccCCCCEE-EEEeCCCcEEEEEcCCCCceEEEeec--cCCCEEEEEEcCCCCEEEEEECCCeEEEEecCC
Q 005096 363 HPFHEEYF-VSGSLDGSIFHWLVGHETPQVEIHNV--HDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNR 429 (715)
Q Consensus 363 sp~~~~~l-~sgs~DG~I~iwd~~~~~~~~~~~~~--h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~ 429 (715)
++ ++.+| ++++.||.|++||+.+.......+.. |...|++++|++++.++++ .|+.+++|++..
T Consensus 276 s~-~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~ 342 (402)
T 2aq5_A 276 DP-DTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYKLHE 342 (402)
T ss_dssp ET-TTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEEEET
T ss_pred cC-CCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--cceeEEEEEcCC
Confidence 99 56666 46668999999999988753333333 4589999999999988764 577999999975
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-34 Score=345.11 Aligned_cols=241 Identities=12% Similarity=0.074 Sum_probs=202.5
Q ss_pred ecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 005096 139 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN 218 (715)
Q Consensus 139 ~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~ 218 (715)
...+|...|++++|++++++||+|+.||+|+|||..+.+....+ .|...|.+++|++ +++|++++.|++|+|||++++
T Consensus 12 ~~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~-~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~ 89 (902)
T 2oaj_A 12 NKYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKL-EDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQ 89 (902)
T ss_dssp EEEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEEC-SSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTC
T ss_pred cccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEc-CCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCC
Confidence 34589999999999999999999999999999999887665554 4788999999999 889999999999999999999
Q ss_pred ceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeE-----------EEecccCCceEEEEEcCC-CCEEE
Q 005096 219 NVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEE-----------RSLTGHGWDVKSVDWHPT-KSLLV 286 (715)
Q Consensus 219 ~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~-----------~~l~~~~~~I~si~~spd-g~~L~ 286 (715)
+.+..+. +...|++++|++++++|++|+.||+|++||+++.+.. ..+.+|...|++|+|+|+ +.+|+
T Consensus 90 ~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~ 168 (902)
T 2oaj_A 90 KVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVL 168 (902)
T ss_dssp SEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEE
T ss_pred cEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEE
Confidence 8887775 6689999999999999999999999999999887754 234568889999999996 46899
Q ss_pred EEeCCCcEEEEECCCCceeEEeccC------------------CCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEE
Q 005096 287 SGGKDSLVKLWDAKSGRELCSFHGH------------------KNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELE 348 (715)
Q Consensus 287 sgs~Dg~I~iwDl~s~~~~~~~~~~------------------~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~ 348 (715)
+++.|+.| |||+++++.+..+..+ ...|++++|++++++|++++.|+.|+|||+++++.+.
T Consensus 169 ~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~ 247 (902)
T 2oaj_A 169 ISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIM 247 (902)
T ss_dssp EECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEE
T ss_pred EEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEE
Confidence 99999999 9999999988888755 4679999999999999999999999999999988765
Q ss_pred E--ee---c-------------CCCCeEEEEEccC----CCCEEEEEeCC-----CcEEEEE
Q 005096 349 S--FR---G-------------HRKDVTALAWHPF----HEEYFVSGSLD-----GSIFHWL 383 (715)
Q Consensus 349 ~--~~---~-------------h~~~V~~l~~sp~----~~~~l~sgs~D-----G~I~iwd 383 (715)
. +. . +...|++++|++. +..+|++|+.| ..|++|+
T Consensus 248 ~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~ 309 (902)
T 2oaj_A 248 ARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMID 309 (902)
T ss_dssp EECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEE
T ss_pred EEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEe
Confidence 4 21 1 2346899999542 23456666544 2455555
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-34 Score=306.96 Aligned_cols=255 Identities=20% Similarity=0.367 Sum_probs=223.4
Q ss_pred ceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCC--CCceeeeecCCCCCeEEEEEecC--CCEEEEEECCCcE
Q 005096 177 NFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNN--MNNVKANKSAHKESVRDLSFCRT--DLKFCSCSDDTTV 252 (715)
Q Consensus 177 ~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~--~~~~~~~~~~h~~~I~~l~~spd--~~~Las~s~Dg~V 252 (715)
+.+..+.+|...|++++|++++++|++++.||.|+|||+. +.+....+..|...|.+++|+++ +++|++++.|+.|
T Consensus 2 ~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v 81 (379)
T 3jrp_A 2 SMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKV 81 (379)
T ss_dssp ---CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred CccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEE
Confidence 4566788999999999999999999999999999999998 55677788899999999999976 8999999999999
Q ss_pred EEEECCCCe--eEEEecccCCceEEEEEcCC--CCEEEEEeCCCcEEEEECCCCc--eeEEeccCCCceEEEEEcC----
Q 005096 253 KVWDFARCQ--EERSLTGHGWDVKSVDWHPT--KSLLVSGGKDSLVKLWDAKSGR--ELCSFHGHKNMVLCVKWNQ---- 322 (715)
Q Consensus 253 ~iwdl~~~~--~~~~l~~~~~~I~si~~spd--g~~L~sgs~Dg~I~iwDl~s~~--~~~~~~~~~~~I~sl~~sp---- 322 (715)
++||+++++ .+..+..|...|.+++|+++ +++|++++.|+.|++||+++.. ....+..|...|.+++|++
T Consensus 82 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 161 (379)
T 3jrp_A 82 LIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIE 161 (379)
T ss_dssp EEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC--
T ss_pred EEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCcccc
Confidence 999999887 67778889999999999999 8999999999999999999873 3445677899999999999
Q ss_pred ---------CCCEEEEEECCCeEEEEECCCCe----EEEEeecCCCCeEEEEEccCC--CCEEEEEeCCCcEEEEEcCCC
Q 005096 323 ---------NGNWVLTASKDQIIKLYDIRAMK----ELESFRGHRKDVTALAWHPFH--EEYFVSGSLDGSIFHWLVGHE 387 (715)
Q Consensus 323 ---------dg~~Lasgs~dg~I~iwDl~t~~----~~~~~~~h~~~V~~l~~sp~~--~~~l~sgs~DG~I~iwd~~~~ 387 (715)
++++|++++.|+.|++||+++++ .+..+..|...|.+++|++++ +.+|++++.||.|+|||++..
T Consensus 162 ~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~ 241 (379)
T 3jrp_A 162 EDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNE 241 (379)
T ss_dssp --------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESST
T ss_pred ccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCC
Confidence 69999999999999999998754 456778899999999999943 899999999999999999876
Q ss_pred Cce--EEEee--ccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCCCC
Q 005096 388 TPQ--VEIHN--VHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPG 431 (715)
Q Consensus 388 ~~~--~~~~~--~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~ 431 (715)
... ..+.. .|...|++++|++++.+|++++.||.|+||+++..+
T Consensus 242 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~ 289 (379)
T 3jrp_A 242 QGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 289 (379)
T ss_dssp TSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEETT
T ss_pred CccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCCC
Confidence 432 22222 378899999999999999999999999999997543
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-34 Score=304.41 Aligned_cols=275 Identities=16% Similarity=0.201 Sum_probs=235.4
Q ss_pred eeehhhheeeEEEEEeccCCCccccccCchhhhcCccceeecCCCCCceeeeEEEEecCCCCccEEEEEEcCCCCEEEEE
Q 005096 83 DYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSFAAKFVHTSLNKNRCSINRVLWTPTGRRLITG 162 (715)
Q Consensus 83 ~~~~~~~~~~~irvW~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~~l~~spdg~~Latg 162 (715)
.++.+...+..|++|+....+. .....+.+|...|++++|++++++|+++
T Consensus 21 ~~l~~~~~d~~v~i~~~~~~~~------------------------------~~~~~~~~h~~~v~~~~~~~~~~~l~~~ 70 (372)
T 1k8k_C 21 TQIAICPNNHEVHIYEKSGNKW------------------------------VQVHELKEHNGQVTGVDWAPDSNRIVTC 70 (372)
T ss_dssp SEEEEECSSSEEEEEEEETTEE------------------------------EEEEEEECCSSCEEEEEEETTTTEEEEE
T ss_pred CEEEEEeCCCEEEEEeCCCCcE------------------------------EeeeeecCCCCcccEEEEeCCCCEEEEE
Confidence 3455555678999998753320 0223566899999999999999999999
Q ss_pred eCCCeEEEEeCCCCceEEEE--eccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc----eeeeecCCCCCeEEEEE
Q 005096 163 SQSGEFTLWNGQSFNFEMIL--QAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNN----VKANKSAHKESVRDLSF 236 (715)
Q Consensus 163 s~dg~I~Iwd~~~~~~~~~l--~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~----~~~~~~~h~~~I~~l~~ 236 (715)
+.||.|+|||+++++....+ ..|...|.+++|++++++|++++.|+.|++||++... .......|...|.+++|
T Consensus 71 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~ 150 (372)
T 1k8k_C 71 GTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDW 150 (372)
T ss_dssp ETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEE
T ss_pred cCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEE
Confidence 99999999999888755444 6688999999999999999999999999999998876 23344678899999999
Q ss_pred ecCCCEEEEEECCCcEEEEEC------------------CCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005096 237 CRTDLKFCSCSDDTTVKVWDF------------------ARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWD 298 (715)
Q Consensus 237 spd~~~Las~s~Dg~V~iwdl------------------~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwD 298 (715)
++++++|++++.|+.|++||+ ..++.+..+..|...|.+++|++++++|++++.|+.|++||
T Consensus 151 ~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d 230 (372)
T 1k8k_C 151 HPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLAD 230 (372)
T ss_dssp CTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEE
T ss_pred cCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEE
Confidence 999999999999999999995 36778888888999999999999999999999999999999
Q ss_pred CCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCC--CeE--E---------------------------
Q 005096 299 AKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRA--MKE--L--------------------------- 347 (715)
Q Consensus 299 l~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t--~~~--~--------------------------- 347 (715)
+++++.+..+..|...|.+++|++++++|+++ .|+.|++||+++ ++. +
T Consensus 231 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (372)
T 1k8k_C 231 ADKKMAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKA 309 (372)
T ss_dssp GGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC
T ss_pred CCCCceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhccccc
Confidence 99999999999999999999999999988887 899999999987 421 0
Q ss_pred ---------EEe-ecCCCCeEEEEEccCCC---CEEEEEeCCCcEEEEEcCCCC
Q 005096 348 ---------ESF-RGHRKDVTALAWHPFHE---EYFVSGSLDGSIFHWLVGHET 388 (715)
Q Consensus 348 ---------~~~-~~h~~~V~~l~~sp~~~---~~l~sgs~DG~I~iwd~~~~~ 388 (715)
..+ .+|...|++++|++.++ .+|++++.||.|++||+++..
T Consensus 310 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~ 363 (372)
T 1k8k_C 310 SSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE 363 (372)
T ss_dssp ---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHH
T ss_pred ccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChh
Confidence 223 48999999999886566 999999999999999986543
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-33 Score=310.16 Aligned_cols=284 Identities=15% Similarity=0.148 Sum_probs=236.9
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc---eEEEEecc------------------------------------
Q 005096 145 CSINRVLWTPTGRRLITGSQSGEFTLWNGQSFN---FEMILQAH------------------------------------ 185 (715)
Q Consensus 145 ~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~---~~~~l~~h------------------------------------ 185 (715)
.+|.+++|++||++|+++ .++.|++||+.+++ .+..+..+
T Consensus 5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS 83 (450)
T ss_dssp CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence 578999999999966655 57799999999888 55555432
Q ss_pred ------------------CCCEEEEEEcCCCCEE-EEEeCCCcEEEEeCC--CCceeeeec--CCCCCeEEEEEecCCCE
Q 005096 186 ------------------DHAIRSMVWSHNDNWM-VSGDDGGAIKYWQNN--MNNVKANKS--AHKESVRDLSFCRTDLK 242 (715)
Q Consensus 186 ------------------~~~V~~l~~spdg~~L-~tgs~dg~I~iwd~~--~~~~~~~~~--~h~~~I~~l~~spd~~~ 242 (715)
...|++++|++++++| ++++.||.|+|||+. +++.+..+. .+...|.+++|++++++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~ 163 (450)
T 2vdu_B 84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTT 163 (450)
T ss_dssp ----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSE
T ss_pred ccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCE
Confidence 3369999999999996 889999999999998 777777665 56789999999999999
Q ss_pred EEEEECCCcEEEEECCCCeeEE----EecccCCceEEEEEcCC---CCEEEEEeCCCcEEEEECCCCceeEE-eccCCCc
Q 005096 243 FCSCSDDTTVKVWDFARCQEER----SLTGHGWDVKSVDWHPT---KSLLVSGGKDSLVKLWDAKSGRELCS-FHGHKNM 314 (715)
Q Consensus 243 Las~s~Dg~V~iwdl~~~~~~~----~l~~~~~~I~si~~spd---g~~L~sgs~Dg~I~iwDl~s~~~~~~-~~~~~~~ 314 (715)
|++++.|+.|++||+.+.+... .+.+|...|++++|+++ +++|++++.|+.|+|||+++++.+.. +.+|...
T Consensus 164 l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~ 243 (450)
T 2vdu_B 164 VIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHF 243 (450)
T ss_dssp EEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSC
T ss_pred EEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCc
Confidence 9999999999999998776544 67789999999999999 89999999999999999999988877 5589999
Q ss_pred eEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeec-------------------------CCCCeEEEEEccCCCCE
Q 005096 315 VLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRG-------------------------HRKDVTALAWHPFHEEY 369 (715)
Q Consensus 315 I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~-------------------------h~~~V~~l~~sp~~~~~ 369 (715)
|++++|+ ++++|++++.|+.|+|||+++++.+..+.. ....|.+++|++ ++.+
T Consensus 244 v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~ 321 (450)
T 2vdu_B 244 VSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSK-NLPF 321 (450)
T ss_dssp EEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECS-SSSE
T ss_pred eEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeC-CCCE
Confidence 9999999 999999999999999999999998888763 345799999999 7888
Q ss_pred EEEEe-CCCcEEEEEc--CCCC--ceEEEeeccCCCEEEEEEcCCCCEEEEEEC------CCeEEEEecCCCCC
Q 005096 370 FVSGS-LDGSIFHWLV--GHET--PQVEIHNVHDNTVWDLAWHPIGYLLCSGSN------DHTTKFWCRNRPGD 432 (715)
Q Consensus 370 l~sgs-~DG~I~iwd~--~~~~--~~~~~~~~h~~~V~~l~~spdg~~L~sgs~------Dg~I~iWdl~~~~~ 432 (715)
|++++ .|+.|+||++ .... .....+..+ ..|++++|++++.++++++. +..|.||.++....
T Consensus 322 l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~~~~ 394 (450)
T 2vdu_B 322 VAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNLNEN 394 (450)
T ss_dssp EEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEETTTT
T ss_pred EEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEEcCCC
Confidence 88888 8999999999 4332 233344455 78999999996544444343 55689999876543
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-33 Score=305.82 Aligned_cols=248 Identities=23% Similarity=0.409 Sum_probs=222.0
Q ss_pred ecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 005096 139 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN 218 (715)
Q Consensus 139 ~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~ 218 (715)
.+.+|...|+||+|++||++||+|+.||+|+|||+++++.+..+.+|...|.+++|+ +.+|++|+.|+.+++||....
T Consensus 142 ~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~ 219 (420)
T 4gga_A 142 QMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVA 219 (420)
T ss_dssp ECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSS
T ss_pred EecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeeccc
Confidence 466899999999999999999999999999999999999999999999999999884 789999999999999998864
Q ss_pred -ceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCe----eEEEecccCCceEEEEEcCCCC-EEEEE--eC
Q 005096 219 -NVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQ----EERSLTGHGWDVKSVDWHPTKS-LLVSG--GK 290 (715)
Q Consensus 219 -~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~----~~~~l~~~~~~I~si~~spdg~-~L~sg--s~ 290 (715)
..+..+..|...+..+.|++++++|++++.|+.|++||+.+++ .+.....|...|.+++|++++. +|+++ +.
T Consensus 220 ~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~ 299 (420)
T 4gga_A 220 EHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTS 299 (420)
T ss_dssp SCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTT
T ss_pred ceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecC
Confidence 4566778999999999999999999999999999999997654 3456677889999999999765 55543 57
Q ss_pred CCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEE--CCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCC
Q 005096 291 DSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTAS--KDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEE 368 (715)
Q Consensus 291 Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs--~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~ 368 (715)
|++|+|||+++++++..+.. ...+.++.|+++++.|++++ .|+.|+|||+++++.+.++.+|...|++|+|++ ++.
T Consensus 300 D~~I~iwd~~t~~~~~~~~~-~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~sp-dg~ 377 (420)
T 4gga_A 300 DRHIRIWNVCSGACLSAVDA-HSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSP-DGA 377 (420)
T ss_dssp TCEEEEEETTTTEEEEEEEC-SSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSS
T ss_pred CCEEEEEeCCccccceeecc-ccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcC-CCC
Confidence 99999999999999888874 45789999999999998876 789999999999999999999999999999999 889
Q ss_pred EEEEEeCCCcEEEEEcCCCCce
Q 005096 369 YFVSGSLDGSIFHWLVGHETPQ 390 (715)
Q Consensus 369 ~l~sgs~DG~I~iwd~~~~~~~ 390 (715)
+|++|+.|++|+|||+......
T Consensus 378 ~l~S~s~D~tvriWdv~~~~~~ 399 (420)
T 4gga_A 378 TVASAAADETLRLWRCFELDPA 399 (420)
T ss_dssp CEEEEETTTEEEEECCSCSSCC
T ss_pred EEEEEecCCeEEEEECCCCCcc
Confidence 9999999999999999765443
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-33 Score=298.82 Aligned_cols=245 Identities=18% Similarity=0.285 Sum_probs=213.4
Q ss_pred CCCccEEEEEEcCC---CCEEEEEeCCCeEEEEeCCCCc-eEEEEeccCCCEEEEEE------cCCCCEEEEEeCCCcEE
Q 005096 142 KNRCSINRVLWTPT---GRRLITGSQSGEFTLWNGQSFN-FEMILQAHDHAIRSMVW------SHNDNWMVSGDDGGAIK 211 (715)
Q Consensus 142 ~H~~~I~~l~~spd---g~~Latgs~dg~I~Iwd~~~~~-~~~~l~~h~~~V~~l~~------spdg~~L~tgs~dg~I~ 211 (715)
+|...|++++|+++ +++|++++.||.|+|||+.+.+ .+..+..|...|.+++| ++++++|++++.|+.|+
T Consensus 63 ~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~ 142 (357)
T 3i2n_A 63 EKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVK 142 (357)
T ss_dssp EESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEE
T ss_pred cccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEE
Confidence 68899999999999 6999999999999999999988 88899999999999965 67899999999999999
Q ss_pred EEeCCCCc-eeeeecCCCC----CeEEEE----EecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcC--
Q 005096 212 YWQNNMNN-VKANKSAHKE----SVRDLS----FCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHP-- 280 (715)
Q Consensus 212 iwd~~~~~-~~~~~~~h~~----~I~~l~----~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~sp-- 280 (715)
+||+.+++ ....+..+.. .|.+++ |++++++|++++.|+.|++||+++.+.... ..+...|.+++|++
T Consensus 143 vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~ 221 (357)
T 3i2n_A 143 VWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKD 221 (357)
T ss_dssp EECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSS
T ss_pred EEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCCCC
Confidence 99999876 5666655444 788888 678999999999999999999999877544 55788999999999
Q ss_pred -CCCEEEEEeCCCcEEEEECCCCceeEEec-----cCCCceEEEEEcCCCC-EEEEEECCCeEEEEECCCC---------
Q 005096 281 -TKSLLVSGGKDSLVKLWDAKSGRELCSFH-----GHKNMVLCVKWNQNGN-WVLTASKDQIIKLYDIRAM--------- 344 (715)
Q Consensus 281 -dg~~L~sgs~Dg~I~iwDl~s~~~~~~~~-----~~~~~I~sl~~spdg~-~Lasgs~dg~I~iwDl~t~--------- 344 (715)
++++|++++.|+.|++||+++++.+..+. .|...|++++|+++++ +|++++.||.|+|||+++.
T Consensus 222 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 301 (357)
T 3i2n_A 222 ISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSE 301 (357)
T ss_dssp SSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTT
T ss_pred CCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCC
Confidence 89999999999999999998876655544 8999999999999998 8999999999999999753
Q ss_pred ----------eEEEEeecCCCCeEEEEEccCCCCEEE-EEeCCCcEEEEEcCCCC
Q 005096 345 ----------KELESFRGHRKDVTALAWHPFHEEYFV-SGSLDGSIFHWLVGHET 388 (715)
Q Consensus 345 ----------~~~~~~~~h~~~V~~l~~sp~~~~~l~-sgs~DG~I~iwd~~~~~ 388 (715)
+.+..+..|...|++++|++ ++.+|+ +++.||.|+|||+.+..
T Consensus 302 g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~s~~~d~~i~iw~~~~~~ 355 (357)
T 3i2n_A 302 GIEMGVAGSVSLLQNVTLSTQPISSLDWSP-DKRGLCVCSSFDQTVRVLIVTKLN 355 (357)
T ss_dssp SCCCCCCCEEEEEEEEECCSSCEEEEEECS-SSTTEEEEEETTSEEEEEEECC--
T ss_pred CCccccccccceeeccccCCCCeeEEEEcC-CCCeEEEEecCCCcEEEEECCCcc
Confidence 46778889999999999999 555555 89999999999997643
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-32 Score=288.53 Aligned_cols=284 Identities=19% Similarity=0.285 Sum_probs=242.4
Q ss_pred CCCCcccchhhhhcccccccceEeeehhhheeeEEEEEeccCCCccccccCchhhhcCccceeecCCCCCceeeeEEEEe
Q 005096 60 PYDAHGDSFAAKRMRKLTQRRAVDYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSFAAKFVHTS 139 (715)
Q Consensus 60 ~~~~h~~~~~~~r~~~~~~~~~~~~~~~~~~~~~irvW~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 139 (715)
.+.+|...+.+..+ ....++.+...++.|++|+....+ ....
T Consensus 13 ~l~~h~~~v~~~~~------~~~~~l~s~~~dg~v~vw~~~~~~--------------------------------~~~~ 54 (313)
T 3odt_A 13 TLKGHDQDVRDVVA------VDDSKVASVSRDGTVRLWSKDDQW--------------------------------LGTV 54 (313)
T ss_dssp EECCCSSCEEEEEE------EETTEEEEEETTSEEEEEEESSSE--------------------------------EEEE
T ss_pred HhhCCCCCcEEEEe------cCCCEEEEEEcCCcEEEEECCCCE--------------------------------EEEE
Confidence 35566666655444 123345666778899999874321 1224
Q ss_pred cCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC---ceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 005096 140 LNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSF---NFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNN 216 (715)
Q Consensus 140 l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~---~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~ 216 (715)
+..|...|++++|++++++|++++.||.|++|++.+. +.+..+..|...|.+++| ++++|++++.|+.|++||
T Consensus 55 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d-- 130 (313)
T 3odt_A 55 VYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK-- 130 (313)
T ss_dssp EEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--
T ss_pred eecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--
Confidence 5578999999999999999999999999999997654 567788899999999999 678999999999999999
Q ss_pred CCceeeeecCCCCCeEEEEEec-CCCEEEEEECCCcEEEEECCCCeeEEEecc-cCCceEEEEEcCCCCEEEEEeCCCcE
Q 005096 217 MNNVKANKSAHKESVRDLSFCR-TDLKFCSCSDDTTVKVWDFARCQEERSLTG-HGWDVKSVDWHPTKSLLVSGGKDSLV 294 (715)
Q Consensus 217 ~~~~~~~~~~h~~~I~~l~~sp-d~~~Las~s~Dg~V~iwdl~~~~~~~~l~~-~~~~I~si~~spdg~~L~sgs~Dg~I 294 (715)
..+....+..|...|.+++|++ ++++|++++.|+.|++|| ..+....+.. +...|.+++|++++. |++++.|+.|
T Consensus 131 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i 207 (313)
T 3odt_A 131 EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLI 207 (313)
T ss_dssp TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEE
T ss_pred CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeE
Confidence 6677778888999999999998 899999999999999999 4456666666 889999999999988 9999999999
Q ss_pred EEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEe
Q 005096 295 KLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGS 374 (715)
Q Consensus 295 ~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs 374 (715)
++||+++++.+..+..|...|++++|++++ .|++++.|+.|++||+++++.+..+..|...|.+++|++ ++. +++++
T Consensus 208 ~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~-~~~-~~~~~ 284 (313)
T 3odt_A 208 KLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMS-NGD-IIVGS 284 (313)
T ss_dssp EEEETTTCCEEEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECT-TSC-EEEEE
T ss_pred EEEECCchhhhhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEcc-CCC-EEEEe
Confidence 999999999999999999999999999999 588999999999999999999999999999999999999 555 66799
Q ss_pred CCCcEEEEEcCCCCceE
Q 005096 375 LDGSIFHWLVGHETPQV 391 (715)
Q Consensus 375 ~DG~I~iwd~~~~~~~~ 391 (715)
.||.|++||+++.....
T Consensus 285 ~dg~i~iw~~~~~~~~~ 301 (313)
T 3odt_A 285 SDNLVRIFSQEKSRWAS 301 (313)
T ss_dssp TTSCEEEEESCGGGCCC
T ss_pred CCCcEEEEeCCCCceee
Confidence 99999999998765443
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-33 Score=301.45 Aligned_cols=267 Identities=15% Similarity=0.179 Sum_probs=221.7
Q ss_pred eeehhhheeeEEEEEeccCCCccccccCchhhhcCccceeecCCCCCceeeeEEEEecCCCCccEEEEEEcC-CCCEEEE
Q 005096 83 DYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSFAAKFVHTSLNKNRCSINRVLWTP-TGRRLIT 161 (715)
Q Consensus 83 ~~~~~~~~~~~irvW~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~~l~~sp-dg~~Lat 161 (715)
.++.+...+..|++|+....+.. ....+.+|...|++++|++ ++++|++
T Consensus 87 ~~l~s~~~dg~i~iwd~~~~~~~------------------------------~~~~~~~h~~~v~~~~~~~~~~~~l~s 136 (383)
T 3ei3_B 87 TTVAVGSKGGDIILWDYDVQNKT------------------------------SFIQGMGPGDAITGMKFNQFNTNQLFV 136 (383)
T ss_dssp TEEEEEEBTSCEEEEETTSTTCE------------------------------EEECCCSTTCBEEEEEEETTEEEEEEE
T ss_pred CEEEEEcCCCeEEEEeCCCcccc------------------------------eeeecCCcCCceeEEEeCCCCCCEEEE
Confidence 35556666778888887633211 1113457999999999999 7899999
Q ss_pred EeCCCeEEEEeCCCCceEEEEecc---CCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEec
Q 005096 162 GSQSGEFTLWNGQSFNFEMILQAH---DHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCR 238 (715)
Q Consensus 162 gs~dg~I~Iwd~~~~~~~~~l~~h---~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp 238 (715)
++.|+.|+|||+.+ +.+..+..+ ...|.+++|++++++|++++.|+.|++||+ .++.+..+..|...|.+++|++
T Consensus 137 ~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~ 214 (383)
T 3ei3_B 137 SSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNP 214 (383)
T ss_dssp EETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECS
T ss_pred EeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECC
Confidence 99999999999986 555555544 478999999999999999999999999999 4667778889999999999999
Q ss_pred CCC-EEEEEECCCcEEEEECCC----CeeEEEecccCCceEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeEEeccCC
Q 005096 239 TDL-KFCSCSDDTTVKVWDFAR----CQEERSLTGHGWDVKSVDWHP-TKSLLVSGGKDSLVKLWDAKSGRELCSFHGHK 312 (715)
Q Consensus 239 d~~-~Las~s~Dg~V~iwdl~~----~~~~~~l~~~~~~I~si~~sp-dg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~ 312 (715)
+++ +|++++.|++|++||+++ ...+..+ .|...|.+++|++ ++++|++++.|+.|+|||+++++.+..+..|.
T Consensus 215 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 293 (383)
T 3ei3_B 215 RCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHP 293 (383)
T ss_dssp SCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECC
T ss_pred CCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccccccccc
Confidence 998 999999999999999987 5566666 6899999999999 99999999999999999999988776665432
Q ss_pred -----------------CceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeec--CCCCeEEEEEccCCCCEEEEE
Q 005096 313 -----------------NMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRG--HRKDVTALAWHPFHEEYFVSG 373 (715)
Q Consensus 313 -----------------~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~--h~~~V~~l~~sp~~~~~l~sg 373 (715)
..+.+++|++++++ +++.|+.|+|||+++++.+..+.. +...+.+++|++ ++.+|+++
T Consensus 294 ~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~-~g~~l~s~ 370 (383)
T 3ei3_B 294 HRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSP-TGDVLASG 370 (383)
T ss_dssp BCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECT-TSSEEEEE
T ss_pred ccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEec-CccEEEEe
Confidence 23444666666665 667899999999999999999987 457788889999 88899999
Q ss_pred eCCCcEEEEEcCC
Q 005096 374 SLDGSIFHWLVGH 386 (715)
Q Consensus 374 s~DG~I~iwd~~~ 386 (715)
+ ||.|+|||+++
T Consensus 371 s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 371 M-GFNILIWNRED 382 (383)
T ss_dssp E-TTEEEEEECC-
T ss_pred c-CCcEEEEecCC
Confidence 7 99999999864
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-34 Score=309.29 Aligned_cols=271 Identities=16% Similarity=0.206 Sum_probs=216.2
Q ss_pred EeeehhhheeeEEEEEeccCCCccccccCchhhhcCccceeecCCCCCceeeeEEEEecCCCCccEEEEEEcCCCCEEEE
Q 005096 82 VDYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSFAAKFVHTSLNKNRCSINRVLWTPTGRRLIT 161 (715)
Q Consensus 82 ~~~~~~~~~~~~irvW~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~~l~~spdg~~Lat 161 (715)
.+++.+...+..|++|+...... .....+.+|...|++++|++++++|++
T Consensus 23 g~~l~~~~~d~~i~iw~~~~~~~------------------------------~~~~~~~~h~~~v~~~~~s~~~~~l~s 72 (377)
T 3dwl_C 23 RTEFVTTTATNQVELYEQDGNGW------------------------------KHARTFSDHDKIVTCVDWAPKSNRIVT 72 (377)
T ss_dssp SSEEECCCSSSCBCEEEEETTEE------------------------------EECCCBCCCSSCEEEEEECTTTCCEEE
T ss_pred CCEEEEecCCCEEEEEEccCCce------------------------------EEEEEEecCCceEEEEEEeCCCCEEEE
Confidence 34566666788899998753210 112256789999999999999999999
Q ss_pred EeCCCeEEEEeCCCCc---eEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc---eeeeecC-CCCCeEEE
Q 005096 162 GSQSGEFTLWNGQSFN---FEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNN---VKANKSA-HKESVRDL 234 (715)
Q Consensus 162 gs~dg~I~Iwd~~~~~---~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~---~~~~~~~-h~~~I~~l 234 (715)
++.|++|+|||+.+++ ....+..|...|.+++|++++++|++++.|+.|++||+++++ ....+.. |...|.++
T Consensus 73 ~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~ 152 (377)
T 3dwl_C 73 CSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSL 152 (377)
T ss_dssp EETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEE
T ss_pred EeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEE
Confidence 9999999999999876 677788899999999999999999999999999999999876 3566666 99999999
Q ss_pred EEecCCCEEEEEECCCcEEEEECC------------------CCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEE
Q 005096 235 SFCRTDLKFCSCSDDTTVKVWDFA------------------RCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKL 296 (715)
Q Consensus 235 ~~spd~~~Las~s~Dg~V~iwdl~------------------~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~i 296 (715)
+|++++++|++++.|++|++||++ .++.+..+ .|...|.+++|++++++|++++.|+.|+|
T Consensus 153 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~i 231 (377)
T 3dwl_C 153 DWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTI 231 (377)
T ss_dssp EECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-
T ss_pred EEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEE
Confidence 999999999999999999999985 24455566 88999999999999999999999999999
Q ss_pred EECCCCce----eEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCe-E-------------------------
Q 005096 297 WDAKSGRE----LCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMK-E------------------------- 346 (715)
Q Consensus 297 wDl~s~~~----~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~-~------------------------- 346 (715)
||+++++. +..+..|...|.+++|++++++|++++.++.+ +|+..... .
T Consensus 232 wd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (377)
T 3dwl_C 232 AYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGRE 310 (377)
T ss_dssp CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCC
T ss_pred EECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeecccccccccccccccccccc
Confidence 99999887 77888899999999999999999998766655 66654211 0
Q ss_pred ----E------EEe----------------ecCCCCeEEEEEccCCCC---EEEEEeCCCcEEEEEc
Q 005096 347 ----L------ESF----------------RGHRKDVTALAWHPFHEE---YFVSGSLDGSIFHWLV 384 (715)
Q Consensus 347 ----~------~~~----------------~~h~~~V~~l~~sp~~~~---~l~sgs~DG~I~iwd~ 384 (715)
+ ..+ ..|...|+++++.+.++. .|++++.||.|+|||+
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 311 EEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp C-------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred cccccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 0 111 128899999998764444 7999999999999985
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-33 Score=298.18 Aligned_cols=284 Identities=14% Similarity=0.171 Sum_probs=225.4
Q ss_pred ecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEE-EEEeCCCcEEEEeCCC
Q 005096 139 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWM-VSGDDGGAIKYWQNNM 217 (715)
Q Consensus 139 ~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L-~tgs~dg~I~iwd~~~ 217 (715)
.+..|...|++++|++||++|++|+.++ ++|||+++++....... ..+..+++..+++++ ++++.|+.|+|||+.+
T Consensus 14 ~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~ 90 (355)
T 3vu4_A 14 PENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEM--RHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVK 90 (355)
T ss_dssp -----CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEEC--SCCCEEEECTTSSEEEEECSSTTEEEEEETTT
T ss_pred ccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeec--CCeEEEEEcCCCCEEEEEECCccEEEEEECCC
Confidence 4578999999999999999999998776 88999988766655443 357788888888887 5677889999999999
Q ss_pred CceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCC-eeEEEecccCCceEEEEEcCCCCEEEE--EeCCCcE
Q 005096 218 NNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARC-QEERSLTGHGWDVKSVDWHPTKSLLVS--GGKDSLV 294 (715)
Q Consensus 218 ~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~-~~~~~l~~~~~~I~si~~spdg~~L~s--gs~Dg~I 294 (715)
++.+..+. +...|.+++|+++ .++++ .|+.|++||+.+. +.+..+.. ....+++++ +++++ ++.||.|
T Consensus 91 ~~~~~~~~-~~~~v~~v~~~~~--~~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~~la~~sg~~~g~v 161 (355)
T 3vu4_A 91 KQDVSRIK-VDAPVKDLFLSRE--FIVVS-YGDVISVFKFGNPWKRITDDIR---FGGVCEFSN--GLLVYSNEFNLGQI 161 (355)
T ss_dssp TEEEEEEE-CSSCEEEEEECSS--EEEEE-ETTEEEEEESSTTCCBSSCCEE---EEEEEEEET--TEEEEEESSCTTCE
T ss_pred CcEEEEEE-CCCceEEEEEcCC--EEEEE-EcCEEEEEECCCCceeeEEecc---CCceEEEEc--cEEEEeCCCcCcEE
Confidence 98888775 6678999999865 34444 4789999999887 66655554 344556665 66666 5789999
Q ss_pred EEEECCCCc----------------eeEEeccCCCceEEEEEcCCCCEEEEEECCCe-EEEEECCCCeEEEEee-c-CCC
Q 005096 295 KLWDAKSGR----------------ELCSFHGHKNMVLCVKWNQNGNWVLTASKDQI-IKLYDIRAMKELESFR-G-HRK 355 (715)
Q Consensus 295 ~iwDl~s~~----------------~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~-I~iwDl~t~~~~~~~~-~-h~~ 355 (715)
++||+++++ ++..+.+|...|++++|++++++|++++.|++ |+|||+++++.+..+. + |..
T Consensus 162 ~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~ 241 (355)
T 3vu4_A 162 HITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRA 241 (355)
T ss_dssp EEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCS
T ss_pred EEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCC
Confidence 999999865 26788999999999999999999999999998 9999999999999998 5 999
Q ss_pred CeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceE-EE---------------------eeccCCCEEEEEEcCCCCEE
Q 005096 356 DVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQV-EI---------------------HNVHDNTVWDLAWHPIGYLL 413 (715)
Q Consensus 356 ~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~-~~---------------------~~~h~~~V~~l~~spdg~~L 413 (715)
.|++++|++ ++++|++++.|++|+|||++...... .. ..........++|++|+++|
T Consensus 242 ~v~~~~~s~-~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l 320 (355)
T 3vu4_A 242 DVVDMKWST-DGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLV 320 (355)
T ss_dssp CEEEEEECT-TSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEE
T ss_pred cEEEEEECC-CCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEE
Confidence 999999999 89999999999999999997643111 00 11112234678999999999
Q ss_pred EEEECCCeEEEEecCCCCCccc
Q 005096 414 CSGSNDHTTKFWCRNRPGDTAR 435 (715)
Q Consensus 414 ~sgs~Dg~I~iWdl~~~~~~~~ 435 (715)
++++.||.+++|++...+...+
T Consensus 321 ~~~~~dg~~~~~~~~~~~~~~~ 342 (355)
T 3vu4_A 321 VVWPHTRMIETFKVVFDDEMER 342 (355)
T ss_dssp EEETTTTEEEEEEEEEETTTTE
T ss_pred EEEeCCCeEEEEEEEcCCCCce
Confidence 9999999999999976554433
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-32 Score=302.82 Aligned_cols=250 Identities=22% Similarity=0.414 Sum_probs=220.9
Q ss_pred EEEeccCCCEEEEEEcCC-CCEEEEEeCCCcEEEEeCCC----------CceeeeecCCCCCeEEEEEecCCC-EEEEEE
Q 005096 180 MILQAHDHAIRSMVWSHN-DNWMVSGDDGGAIKYWQNNM----------NNVKANKSAHKESVRDLSFCRTDL-KFCSCS 247 (715)
Q Consensus 180 ~~l~~h~~~V~~l~~spd-g~~L~tgs~dg~I~iwd~~~----------~~~~~~~~~h~~~I~~l~~spd~~-~Las~s 247 (715)
.....|.+.|++++|+++ +++|++++.||.|+|||+.. ......+..|...|.+++|++++. +|++++
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 201 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS 201 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence 455679999999999997 67999999999999999876 466677789999999999999988 999999
Q ss_pred CCCcEEEEECCCCee-------EEEecccCCceEEEEEcC-CCCEEEEEeCCCcEEEEECCCC---ceeEEeccCCCceE
Q 005096 248 DDTTVKVWDFARCQE-------ERSLTGHGWDVKSVDWHP-TKSLLVSGGKDSLVKLWDAKSG---RELCSFHGHKNMVL 316 (715)
Q Consensus 248 ~Dg~V~iwdl~~~~~-------~~~l~~~~~~I~si~~sp-dg~~L~sgs~Dg~I~iwDl~s~---~~~~~~~~~~~~I~ 316 (715)
.||+|++||+.+... ...+..|...|.+++|++ ++.+|++++.|+.|++||++++ +.+..+..|...|+
T Consensus 202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~ 281 (430)
T 2xyi_A 202 DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVN 281 (430)
T ss_dssp TTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEE
T ss_pred CCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeE
Confidence 999999999987322 456678999999999999 6789999999999999999987 56777888999999
Q ss_pred EEEEcCCCC-EEEEEECCCeEEEEECCC-CeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCC------
Q 005096 317 CVKWNQNGN-WVLTASKDQIIKLYDIRA-MKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHET------ 388 (715)
Q Consensus 317 sl~~spdg~-~Lasgs~dg~I~iwDl~t-~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~------ 388 (715)
+++|++++. +|++++.||.|+|||+++ ...+..+..|...|++++|++++..+|++++.|+.|+|||+....
T Consensus 282 ~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 361 (430)
T 2xyi_A 282 CLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTE 361 (430)
T ss_dssp EEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHH
T ss_pred EEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCcc
Confidence 999999887 688999999999999998 567888999999999999999666789999999999999997632
Q ss_pred -------ceEEEeeccCCCEEEEEEcCCCC-EEEEEECCCeEEEEecCC
Q 005096 389 -------PQVEIHNVHDNTVWDLAWHPIGY-LLCSGSNDHTTKFWCRNR 429 (715)
Q Consensus 389 -------~~~~~~~~h~~~V~~l~~spdg~-~L~sgs~Dg~I~iWdl~~ 429 (715)
.......+|...|++++|++++. +|++++.||.|+||+++.
T Consensus 362 ~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~ 410 (430)
T 2xyi_A 362 DAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAE 410 (430)
T ss_dssp HHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECH
T ss_pred ccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEccc
Confidence 45556667889999999999998 999999999999999853
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-32 Score=294.06 Aligned_cols=340 Identities=16% Similarity=0.245 Sum_probs=236.6
Q ss_pred CCCcccchhhhhcccccccceEeeehhhheeeEEEEEeccCCCccccccCchhhhcCccceeecCCCCCceeeeEEEEec
Q 005096 61 YDAHGDSFAAKRMRKLTQRRAVDYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSFAAKFVHTSL 140 (715)
Q Consensus 61 ~~~h~~~~~~~r~~~~~~~~~~~~~~~~~~~~~irvW~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l 140 (715)
+.+|...+.+..+.. ....++.+...++.|++|+....+....... . ..........
T Consensus 39 ~~~h~~~v~~~~~s~----~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-------~------------~~~~~~~~~~ 95 (408)
T 4a11_B 39 ERIHGGGINTLDIEP----VEGRYMLSGGSDGVIVLYDLENSSRQSYYTC-------K------------AVCSIGRDHP 95 (408)
T ss_dssp CCCCSSCEEEEEECT----TTCCEEEEEETTSCEEEEECCCCSSSSCEEE-------C------------EEEEECTTCT
T ss_pred eeccCCcEEEEEEec----CCCCEEEEEcCCCeEEEEECCCCcccceEec-------c------------cccccccccc
Confidence 344555554444322 0234566667788999999875542221100 0 0000001123
Q ss_pred CCCCccEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCC---CCEEEEEeCCCcEEEEeCC
Q 005096 141 NKNRCSINRVLWTP-TGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHN---DNWMVSGDDGGAIKYWQNN 216 (715)
Q Consensus 141 ~~H~~~I~~l~~sp-dg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spd---g~~L~tgs~dg~I~iwd~~ 216 (715)
.+|...|++++|++ ++++|++++.||.|+|||+.+++....+. +...+.++.|++. +.+|++++.|+.|++||++
T Consensus 96 ~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~ 174 (408)
T 4a11_B 96 DVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLK 174 (408)
T ss_dssp TCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESS
T ss_pred ccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCC
Confidence 57999999999999 78899999999999999999998888776 7788999999885 4599999999999999999
Q ss_pred CCceeeeecCCCCCeEEEEEecCCC-EEEEEECCCcEEEEECCCCe-eEEEe---------------cccCCceEEEEEc
Q 005096 217 MNNVKANKSAHKESVRDLSFCRTDL-KFCSCSDDTTVKVWDFARCQ-EERSL---------------TGHGWDVKSVDWH 279 (715)
Q Consensus 217 ~~~~~~~~~~h~~~I~~l~~spd~~-~Las~s~Dg~V~iwdl~~~~-~~~~l---------------~~~~~~I~si~~s 279 (715)
+++....+..|...|.+++|++++. +|++++.|+.|++||+++.. .+..+ ..|...|.+++|+
T Consensus 175 ~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 254 (408)
T 4a11_B 175 SGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFT 254 (408)
T ss_dssp SSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEEC
T ss_pred CcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEc
Confidence 9998889999999999999999998 58999999999999997765 33333 4678899999999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCceeEEeccC-----CCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCC
Q 005096 280 PTKSLLVSGGKDSLVKLWDAKSGRELCSFHGH-----KNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHR 354 (715)
Q Consensus 280 pdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~-----~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~ 354 (715)
+++++|++++.|+.|++||+++++.+..+..+ ...+........+..+++++.|+.|++||+.+++.+..+.+|.
T Consensus 255 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~ 334 (408)
T 4a11_B 255 SDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHY 334 (408)
T ss_dssp TTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCS
T ss_pred CCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCC
Confidence 99999999999999999999988765544322 1122222223345567777889999999999999999999999
Q ss_pred CCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcC-CCCEEEEEECCCeEEEEecCC
Q 005096 355 KDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHP-IGYLLCSGSNDHTTKFWCRNR 429 (715)
Q Consensus 355 ~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~L~sgs~Dg~I~iWdl~~ 429 (715)
..|++++|++ ++.+|++++.||.|++||+++...+...... .....+.+ +...+.+.+.|+.+++|+...
T Consensus 335 ~~v~~~~~s~-~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~ 405 (408)
T 4a11_B 335 KTVDCCVFQS-NFQELYSGSRDCNILAWVPSLYEPVPDDDET----TTKSQLNPAFEDAWSSSDEEGGTSAWSHPQ 405 (408)
T ss_dssp SCEEEEEEET-TTTEEEEEETTSCEEEEEECC--------------------------------------------
T ss_pred CeEEEEEEcC-CCCEEEEECCCCeEEEEeCCCCCccCCCCce----EeccccccccceeecccCccCceeecCCcc
Confidence 9999999999 8899999999999999999887654433221 11122333 344566777899999998753
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-33 Score=310.46 Aligned_cols=271 Identities=17% Similarity=0.192 Sum_probs=226.8
Q ss_pred EcCCCCEEEEEeCCCeEEEEeCCCCceEEEE-eccCCCEEEEEEcC-CCCEEEEEeCCCcEEEEeCCC---Cc---eeee
Q 005096 152 WTPTGRRLITGSQSGEFTLWNGQSFNFEMIL-QAHDHAIRSMVWSH-NDNWMVSGDDGGAIKYWQNNM---NN---VKAN 223 (715)
Q Consensus 152 ~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l-~~h~~~V~~l~~sp-dg~~L~tgs~dg~I~iwd~~~---~~---~~~~ 223 (715)
|+++++.+++++ +|+ .+++.+..+ .+|.+.|++++|++ ++++|++|+.||.|+|||+.+ +. ....
T Consensus 35 f~~~~~~~~~~~------~w~-~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~ 107 (437)
T 3gre_A 35 FGPIQEIVRSPN------MGN-LRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLT 107 (437)
T ss_dssp GCCCCCCCCCCC------GGG-CCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEE
T ss_pred cCCccccccccc------ccc-ccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeee
Confidence 566777666654 487 456777888 88999999999999 999999999999999999876 32 1222
Q ss_pred ecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECC---CCeeEEEecc------------cCCceEEEE--EcCCCCEEE
Q 005096 224 KSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFA---RCQEERSLTG------------HGWDVKSVD--WHPTKSLLV 286 (715)
Q Consensus 224 ~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~---~~~~~~~l~~------------~~~~I~si~--~spdg~~L~ 286 (715)
+ .|...|.+++|++++++|++++.|++|++||++ +++.+..+.. +...+.++. +++++++|+
T Consensus 108 ~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 186 (437)
T 3gre_A 108 Y-DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLV 186 (437)
T ss_dssp E-ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEE
T ss_pred c-cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEE
Confidence 2 589999999999999999999999999999994 4444333221 445566666 567899999
Q ss_pred EEeCCCcEEEEECCCCceeEEecc--CCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEee-cCCCCeEEEEEc
Q 005096 287 SGGKDSLVKLWDAKSGRELCSFHG--HKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFR-GHRKDVTALAWH 363 (715)
Q Consensus 287 sgs~Dg~I~iwDl~s~~~~~~~~~--~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~-~h~~~V~~l~~s 363 (715)
+++.|+.|++||+++++.+..+.. |...|++++|++++++|++++.||.|+|||+++++.+..+. .|...|++++|+
T Consensus 187 ~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~ 266 (437)
T 3gre_A 187 ALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVC 266 (437)
T ss_dssp EEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEEC
T ss_pred EEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEec
Confidence 999999999999999999999987 78999999999999999999999999999999999999886 788899999877
Q ss_pred cC---CCCEEEEEeCCCcEEEEEcCCCCceEEEee-------------------------ccCCCEEEEEEcCCCCEEEE
Q 005096 364 PF---HEEYFVSGSLDGSIFHWLVGHETPQVEIHN-------------------------VHDNTVWDLAWHPIGYLLCS 415 (715)
Q Consensus 364 p~---~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~-------------------------~h~~~V~~l~~spdg~~L~s 415 (715)
+. ++.+|++++.||.|+|||+++......+.. .|...|++++|+ ++.+|++
T Consensus 267 ~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s 345 (437)
T 3gre_A 267 QFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLT 345 (437)
T ss_dssp TTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEE
T ss_pred cccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEe
Confidence 62 567999999999999999988765544431 156679999999 8899999
Q ss_pred EECCCeEEEEecCCCC
Q 005096 416 GSNDHTTKFWCRNRPG 431 (715)
Q Consensus 416 gs~Dg~I~iWdl~~~~ 431 (715)
++.|+.|++||+....
T Consensus 346 ~~~d~~i~~wd~~~~~ 361 (437)
T 3gre_A 346 DEATSSIVMFSLNELS 361 (437)
T ss_dssp EGGGTEEEEEETTCGG
T ss_pred cCCCCeEEEEECCCcc
Confidence 9999999999997644
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-32 Score=302.59 Aligned_cols=239 Identities=26% Similarity=0.451 Sum_probs=216.4
Q ss_pred ecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 005096 139 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN 218 (715)
Q Consensus 139 ~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~ 218 (715)
.+.+|...|++++| ++++|++|+.||+|+|||+.+++.+..+..|...|.+++|+ +++|++++.||.|++||+.++
T Consensus 168 ~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~ 243 (435)
T 1p22_A 168 ILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASP 243 (435)
T ss_dssp EECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECC--TTEEEEEETTSCEEEEECSSS
T ss_pred EEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCC
Confidence 46789999999999 78899999999999999999999999999999999999996 569999999999999999887
Q ss_pred cee---eeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEE
Q 005096 219 NVK---ANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVK 295 (715)
Q Consensus 219 ~~~---~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~ 295 (715)
... ..+..|...|.+++| ++++|++++.|+.|++||+++++.+..+..|...|.+++|+ +++|++++.|+.|+
T Consensus 244 ~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~g~~dg~i~ 319 (435)
T 1p22_A 244 TDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIR 319 (435)
T ss_dssp SCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEE
T ss_pred CCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeC--CCEEEEEeCCCeEE
Confidence 654 667889999999999 78899999999999999999999999999999999999995 78999999999999
Q ss_pred EEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCe---------EEEEeecCCCCeEEEEEccCC
Q 005096 296 LWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMK---------ELESFRGHRKDVTALAWHPFH 366 (715)
Q Consensus 296 iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~---------~~~~~~~h~~~V~~l~~sp~~ 366 (715)
+||+++++.+..+.+|...|.+++| ++++|++++.||.|+|||+++++ .+..+..|...|++++| +
T Consensus 320 iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~---~ 394 (435)
T 1p22_A 320 LWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF---D 394 (435)
T ss_dssp EEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE---C
T ss_pred EEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe---C
Confidence 9999999999999999999999999 78999999999999999998766 78899999999999999 5
Q ss_pred CCEEEEEeCCCcEEEEEcCCCCce
Q 005096 367 EEYFVSGSLDGSIFHWLVGHETPQ 390 (715)
Q Consensus 367 ~~~l~sgs~DG~I~iwd~~~~~~~ 390 (715)
+.+|++++.||.|++||+.+....
T Consensus 395 ~~~l~s~s~Dg~i~iwd~~~~~~~ 418 (435)
T 1p22_A 395 EFQIVSSSHDDTILIWDFLNDPAA 418 (435)
T ss_dssp SSCEEECCSSSEEEEEC-------
T ss_pred CCEEEEEeCCCEEEEEECCCCCCc
Confidence 678999999999999999776543
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-33 Score=316.30 Aligned_cols=255 Identities=10% Similarity=0.076 Sum_probs=205.4
Q ss_pred CEEEEEeCCCeEEEEeCCCCceE----EEEeccCCCEEEEEEcCC------CCEEEEEeCCCcEEEEeCCCCce------
Q 005096 157 RRLITGSQSGEFTLWNGQSFNFE----MILQAHDHAIRSMVWSHN------DNWMVSGDDGGAIKYWQNNMNNV------ 220 (715)
Q Consensus 157 ~~Latgs~dg~I~Iwd~~~~~~~----~~l~~h~~~V~~l~~spd------g~~L~tgs~dg~I~iwd~~~~~~------ 220 (715)
+.|++++.|++|+|||+.+++.. ..+..|.+.|.+|+|+++ +.+||+++.||+|+|||+..+..
T Consensus 174 ~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~ 253 (524)
T 2j04_B 174 EMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFK 253 (524)
T ss_dssp --------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEE
T ss_pred hhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccce
Confidence 34444667899999998876642 346678899999999986 57999999999999999976532
Q ss_pred -----eeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCe-eEEEecccCCceEEE--EEcCCC-CEEEEEeCC
Q 005096 221 -----KANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQ-EERSLTGHGWDVKSV--DWHPTK-SLLVSGGKD 291 (715)
Q Consensus 221 -----~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~-~~~~l~~~~~~I~si--~~spdg-~~L~sgs~D 291 (715)
...+..|...|++++|+++ ..|++|+.||+|++||++++. ....+.+|...|++| +|++++ ++|++++.|
T Consensus 254 ~~~~p~~~l~~h~~~v~sv~~s~~-~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D 332 (524)
T 2j04_B 254 MCEKPSLTLSLADSLITTFDFLSP-TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVD 332 (524)
T ss_dssp CCCSCSEEECCTTTCEEEEEESSS-SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETT
T ss_pred eecCceEEEEcCCCCEEEEEecCC-CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccC
Confidence 2356778899999999976 589999999999999998763 445678899999999 578887 899999999
Q ss_pred CcEEEEECCCCceeEEeccCCC--ceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCE
Q 005096 292 SLVKLWDAKSGRELCSFHGHKN--MVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEY 369 (715)
Q Consensus 292 g~I~iwDl~s~~~~~~~~~~~~--~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~ 369 (715)
++|+|||+++++++..+.+|.. .|.+++|+|+++.|++++.|++|+|||++++.++..+.+|...|++|+|+| ++.+
T Consensus 333 ~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp-~g~~ 411 (524)
T 2j04_B 333 GYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSR-LHPM 411 (524)
T ss_dssp SEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCS-SCCB
T ss_pred CeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCC-CCCe
Confidence 9999999999887777766543 588999999999999999999999999999998888999999999999999 7889
Q ss_pred EEEEeCCCcEEEEEcCCCCceE-E-Ee-eccCCCEEEEEEcCCCCEE
Q 005096 370 FVSGSLDGSIFHWLVGHETPQV-E-IH-NVHDNTVWDLAWHPIGYLL 413 (715)
Q Consensus 370 l~sgs~DG~I~iwd~~~~~~~~-~-~~-~~h~~~V~~l~~spdg~~L 413 (715)
|++|+.||+|+|||+....... + .. ..+...|++++|++++..+
T Consensus 412 l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~ 458 (524)
T 2j04_B 412 VLAGSADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKY 458 (524)
T ss_dssp CEEEETTTEEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEE
T ss_pred EEEEECCCEEEEEechHhhccccccCccceeeeEEEEeccCCCCCeE
Confidence 9999999999999986542111 0 00 0112257899999998854
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-31 Score=276.60 Aligned_cols=245 Identities=22% Similarity=0.390 Sum_probs=216.2
Q ss_pred ecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 005096 139 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN 218 (715)
Q Consensus 139 ~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~ 218 (715)
.+.+|...|++++|++++++|++|+.||+|+|||+++++.+..+.+|...+.++.+ ++++|++++.++.+++|+....
T Consensus 62 ~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~ 139 (318)
T 4ggc_A 62 QMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVA 139 (318)
T ss_dssp ECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSS
T ss_pred EecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeec--CCCEEEEEecCCceEeeecCCC
Confidence 45689999999999999999999999999999999999999999999999887766 5689999999999999998875
Q ss_pred -ceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCee----EEEecccCCceEEEEEcCCCCEE---EEEeC
Q 005096 219 -NVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQE----ERSLTGHGWDVKSVDWHPTKSLL---VSGGK 290 (715)
Q Consensus 219 -~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~----~~~l~~~~~~I~si~~spdg~~L---~sgs~ 290 (715)
..+..+..|...+..+.+++++++|++++.|++|++||+++++. ......+...|.++++++++..+ ++++.
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 219 (318)
T 4ggc_A 140 EHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTS 219 (318)
T ss_dssp SCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTT
T ss_pred ceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCC
Confidence 45567788999999999999999999999999999999987543 34455678889999999877633 35667
Q ss_pred CCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEE--CCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCC
Q 005096 291 DSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTAS--KDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEE 368 (715)
Q Consensus 291 Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs--~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~ 368 (715)
++.|++||.+......... +...+.++.|+++++.+++++ .|+.|+|||+++++.+.++.+|...|++|+|++ ++.
T Consensus 220 ~~~i~lwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~sp-dg~ 297 (318)
T 4ggc_A 220 DRHIRIWNVCSGACLSAVD-AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSP-DGA 297 (318)
T ss_dssp TCEEEEEETTTCCEEEEEE-CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSS
T ss_pred CCEEEEEeccccccccccc-ceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcC-CCC
Confidence 8999999999887766654 677799999999999888765 799999999999999999999999999999999 889
Q ss_pred EEEEEeCCCcEEEEEcCCC
Q 005096 369 YFVSGSLDGSIFHWLVGHE 387 (715)
Q Consensus 369 ~l~sgs~DG~I~iwd~~~~ 387 (715)
+|++++.||+|+|||+.+.
T Consensus 298 ~l~S~s~D~~v~iWd~~~~ 316 (318)
T 4ggc_A 298 TVASAAADETLRLWRCFEL 316 (318)
T ss_dssp CEEEEETTTEEEEECCSCC
T ss_pred EEEEEecCCeEEEEECCCC
Confidence 9999999999999998653
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-32 Score=294.40 Aligned_cols=246 Identities=15% Similarity=0.257 Sum_probs=215.2
Q ss_pred ecCCCCccEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCC-------ceEEEEeccCCCEEEEEEcCCC-CEEEEEeCCCc
Q 005096 139 SLNKNRCSINRVLWTP-TGRRLITGSQSGEFTLWNGQSF-------NFEMILQAHDHAIRSMVWSHND-NWMVSGDDGGA 209 (715)
Q Consensus 139 ~l~~H~~~I~~l~~sp-dg~~Latgs~dg~I~Iwd~~~~-------~~~~~l~~h~~~V~~l~~spdg-~~L~tgs~dg~ 209 (715)
.+.+|.+.|++++|++ ++++|++|+.||+|+|||+.++ +.+..+.+|...|.+++|++++ ++|++++.|+.
T Consensus 76 ~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~ 155 (402)
T 2aq5_A 76 LVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNV 155 (402)
T ss_dssp CBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSC
T ss_pred eEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCE
Confidence 4678999999999999 9999999999999999999987 6688899999999999999998 69999999999
Q ss_pred EEEEeCCCCceeeee--cCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEe-cccCCc-eEEEEEcCCCCEE
Q 005096 210 IKYWQNNMNNVKANK--SAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSL-TGHGWD-VKSVDWHPTKSLL 285 (715)
Q Consensus 210 I~iwd~~~~~~~~~~--~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l-~~~~~~-I~si~~spdg~~L 285 (715)
|+|||+++++.+..+ ..|...|.+++|++++++|++++.|+.|++||+++++.+..+ ..|... +.+++|++++++|
T Consensus 156 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 235 (402)
T 2aq5_A 156 ILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKIL 235 (402)
T ss_dssp EEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEE
T ss_pred EEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEE
Confidence 999999999988888 789999999999999999999999999999999999998888 677765 8999999999999
Q ss_pred EEE---eCCCcEEEEECCCCce-eEEe-ccCCCceEEEEEcCCCCEEEEE-ECCCeEEEEECCCCeE-EEEeec--CCCC
Q 005096 286 VSG---GKDSLVKLWDAKSGRE-LCSF-HGHKNMVLCVKWNQNGNWVLTA-SKDQIIKLYDIRAMKE-LESFRG--HRKD 356 (715)
Q Consensus 286 ~sg---s~Dg~I~iwDl~s~~~-~~~~-~~~~~~I~sl~~spdg~~Lasg-s~dg~I~iwDl~t~~~-~~~~~~--h~~~ 356 (715)
+++ +.|+.|++||+++++. +... ..+...|.+++|++++++|+++ +.|+.|++||+++++. +..+.. +...
T Consensus 236 ~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~ 315 (402)
T 2aq5_A 236 TTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKES 315 (402)
T ss_dssp EEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSC
T ss_pred EEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCc
Confidence 999 7899999999998765 3332 2467789999999999999754 4799999999998773 444443 5689
Q ss_pred eEEEEEccCCCCEEEEEeCCCcEEEEEcCCC
Q 005096 357 VTALAWHPFHEEYFVSGSLDGSIFHWLVGHE 387 (715)
Q Consensus 357 V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~ 387 (715)
|.+++|++ ++.++++ .++.+++|++.+.
T Consensus 316 v~~~~~sp-~~~~~~s--~~~~~~~~~l~~~ 343 (402)
T 2aq5_A 316 QRGMGYMP-KRGLEVN--KCEIARFYKLHER 343 (402)
T ss_dssp CSEEEECC-GGGSCGG--GTEEEEEEEEETT
T ss_pred ccceEEec-cccccee--cceeEEEEEcCCC
Confidence 99999999 6666654 5669999998654
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-32 Score=326.51 Aligned_cols=251 Identities=20% Similarity=0.328 Sum_probs=221.4
Q ss_pred EecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCC--CCceEEEEeccCCCEEEEEEcCC--CCEEEEEeCCCcEEEE
Q 005096 138 TSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQ--SFNFEMILQAHDHAIRSMVWSHN--DNWMVSGDDGGAIKYW 213 (715)
Q Consensus 138 ~~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~--~~~~~~~l~~h~~~V~~l~~spd--g~~L~tgs~dg~I~iw 213 (715)
..+.+|.+.|++++|++++++|++|+.||.|+|||+. +.+.+..+.+|.+.|++++|+++ +++|++|+.||.|++|
T Consensus 3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vw 82 (753)
T 3jro_A 3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIW 82 (753)
T ss_dssp -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEE
T ss_pred eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEE
Confidence 4678999999999999999999999999999999987 56778889999999999999988 8999999999999999
Q ss_pred eCCCCc--eeeeecCCCCCeEEEEEecC--CCEEEEEECCCcEEEEECCCC--eeEEEecccCCceEEEEEcC-------
Q 005096 214 QNNMNN--VKANKSAHKESVRDLSFCRT--DLKFCSCSDDTTVKVWDFARC--QEERSLTGHGWDVKSVDWHP------- 280 (715)
Q Consensus 214 d~~~~~--~~~~~~~h~~~I~~l~~spd--~~~Las~s~Dg~V~iwdl~~~--~~~~~l~~~~~~I~si~~sp------- 280 (715)
|+.+++ ....+..|...|.+++|+++ +++|++++.||+|++||+++. .....+..|...|.+++|++
T Consensus 83 d~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~ 162 (753)
T 3jro_A 83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG 162 (753)
T ss_dssp EEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC-----
T ss_pred ECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCccccccc
Confidence 999886 66777889999999999999 999999999999999999876 34456678899999999999
Q ss_pred ------CCCEEEEEeCCCcEEEEECCCC----ceeEEeccCCCceEEEEEcCC---CCEEEEEECCCeEEEEECCCCe--
Q 005096 281 ------TKSLLVSGGKDSLVKLWDAKSG----RELCSFHGHKNMVLCVKWNQN---GNWVLTASKDQIIKLYDIRAMK-- 345 (715)
Q Consensus 281 ------dg~~L~sgs~Dg~I~iwDl~s~----~~~~~~~~~~~~I~sl~~spd---g~~Lasgs~dg~I~iwDl~t~~-- 345 (715)
++++|++++.||.|++||++++ ..+..+..|...|++++|+++ +++|++++.||.|+|||+++++
T Consensus 163 ~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~ 242 (753)
T 3jro_A 163 EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGP 242 (753)
T ss_dssp ----CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSC
T ss_pred ccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCc
Confidence 5899999999999999999877 455677889999999999999 8999999999999999999864
Q ss_pred ---EEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCc
Q 005096 346 ---ELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETP 389 (715)
Q Consensus 346 ---~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~ 389 (715)
.+.....|...|++++|++ ++.+|++++.||.|++||++....
T Consensus 243 ~~~~~~~~~~~~~~v~~l~~sp-dg~~l~s~s~Dg~I~vwd~~~~~~ 288 (753)
T 3jro_A 243 WKKTLLKEEKFPDVLWRASWSL-SGNVLALSGGDNKVTLWKENLEGK 288 (753)
T ss_dssp CBCCBSSSSCCSSCCCCEEECT-TTCCEEEECSSSCEECCBCCSSSC
T ss_pred ceeEEeccCCCCCceEEEEEcC-CCCEEEEEcCCCEEEEEecCCCCC
Confidence 3344456888999999999 788999999999999999986543
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-32 Score=293.03 Aligned_cols=266 Identities=11% Similarity=0.035 Sum_probs=219.4
Q ss_pred EEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCC---------CCcee
Q 005096 151 LWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNN---------MNNVK 221 (715)
Q Consensus 151 ~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~---------~~~~~ 221 (715)
.+..++++|++|+.||+|+|||+.+++.+..+. ...|.++.|+++ |++++.|++|++|+.+ +++.+
T Consensus 43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~ 117 (343)
T 3lrv_A 43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVL 117 (343)
T ss_dssp SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEE
T ss_pred hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCccee
Confidence 344577899999999999999999999888876 466778888877 9999999999999765 44433
Q ss_pred eee-cCCCCCeEEEEEec--CCCEEEEEECCCcEEEEECCCCeeEEEec-ccCCceEEEEEcCCCCEEEEEeCCCcEEEE
Q 005096 222 ANK-SAHKESVRDLSFCR--TDLKFCSCSDDTTVKVWDFARCQEERSLT-GHGWDVKSVDWHPTKSLLVSGGKDSLVKLW 297 (715)
Q Consensus 222 ~~~-~~h~~~I~~l~~sp--d~~~Las~s~Dg~V~iwdl~~~~~~~~l~-~~~~~I~si~~spdg~~L~sgs~Dg~I~iw 297 (715)
..+ ..|...|.+++|++ ++++|++++.|++|++||+++++.+..+. .+...|++++|++++.+|++|+.|+.|+||
T Consensus 118 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iw 197 (343)
T 3lrv_A 118 REIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVY 197 (343)
T ss_dssp EEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEE
T ss_pred EEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEE
Confidence 333 36678899999999 99999999999999999999988876664 345579999999999999999999999999
Q ss_pred ECCCCcee-EEecc-CCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeec---CCCCeE--EEEEccCCCCEE
Q 005096 298 DAKSGREL-CSFHG-HKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRG---HRKDVT--ALAWHPFHEEYF 370 (715)
Q Consensus 298 Dl~s~~~~-~~~~~-~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~---h~~~V~--~l~~sp~~~~~l 370 (715)
|+++++.+ ..+.. |...|++++|++++.+|++++ |+.|+|||+++.+.+..+.. +...+. +++|++ ++.+|
T Consensus 198 d~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~l 275 (343)
T 3lrv_A 198 NLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDD-SGKNM 275 (343)
T ss_dssp ESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECT-TSSEE
T ss_pred ECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECC-CCCEE
Confidence 99999887 78887 999999999999999999999 55999999999877655443 334444 699999 88999
Q ss_pred EEEeC-CCcEEEEEcCCCCceEEEeeccCCCEEEEEEcC---CCCEEEEEECCCeEEEEecC
Q 005096 371 VSGSL-DGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHP---IGYLLCSGSNDHTTKFWCRN 428 (715)
Q Consensus 371 ~sgs~-DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~sp---dg~~L~sgs~Dg~I~iWdl~ 428 (715)
++++. |+.|+||+++........ ..+..++|.+ +...|++++.|+.++++-..
T Consensus 276 ~~~s~~d~~i~v~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~ 332 (343)
T 3lrv_A 276 IAYSNESNSLTIYKFDKKTKNWTK-----DEESALCLQSDTADFTDMDVVCGDGGIAAILKT 332 (343)
T ss_dssp EEEETTTTEEEEEEECTTTCSEEE-----EEEEECCC----CCCCEEEEEEETTEEEEEEEC
T ss_pred EEecCCCCcEEEEEEcccccceEe-----cCceeEecCccccccceeEEEecCCceEEEEec
Confidence 99888 999999999776655444 4678888988 88899999999999998643
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-32 Score=301.80 Aligned_cols=247 Identities=17% Similarity=0.220 Sum_probs=203.2
Q ss_pred ecCCCCccEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCceEEEEecc--CCCEEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005096 139 SLNKNRCSINRVLWTP-TGRRLITGSQSGEFTLWNGQSFNFEMILQAH--DHAIRSMVWSHNDNWMVSGDDGGAIKYWQN 215 (715)
Q Consensus 139 ~l~~H~~~I~~l~~sp-dg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h--~~~V~~l~~spdg~~L~tgs~dg~I~iwd~ 215 (715)
.+.+|.+.|++|+|+| ++++|++|+.||+|+|||+++.........+ ...+.+++|++++++|++|+.||.|++||+
T Consensus 159 ~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~ 238 (435)
T 4e54_B 159 KGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNM 238 (435)
T ss_dssp CCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEES
T ss_pred EccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeecc
Confidence 4678999999999997 7899999999999999999876554444433 345789999999999999999999999998
Q ss_pred CCCceeeeecCCCCCeEEEEEecCCC-EEEEEECCCcEEEEECCCCeeEEE---ecccCCceEEEEEcCCCCEEEEEeCC
Q 005096 216 NMNNVKANKSAHKESVRDLSFCRTDL-KFCSCSDDTTVKVWDFARCQEERS---LTGHGWDVKSVDWHPTKSLLVSGGKD 291 (715)
Q Consensus 216 ~~~~~~~~~~~h~~~I~~l~~spd~~-~Las~s~Dg~V~iwdl~~~~~~~~---l~~~~~~I~si~~spdg~~L~sgs~D 291 (715)
+. +.+..+..|...|.+++|++++. +|++++.|++|+|||+++.+.... ...|...|++++|++++++|++++.|
T Consensus 239 ~~-~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D 317 (435)
T 4e54_B 239 DG-KELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQK 317 (435)
T ss_dssp SS-CBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESS
T ss_pred Cc-ceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCC
Confidence 75 45567788999999999999875 788999999999999987654433 35688999999999999999999999
Q ss_pred CcEEEEECCCCceeEEeccCCC------ceEEEEEcCCCCEEEEEE------------CCCeEEEEECCCCeEEEEee-c
Q 005096 292 SLVKLWDAKSGRELCSFHGHKN------MVLCVKWNQNGNWVLTAS------------KDQIIKLYDIRAMKELESFR-G 352 (715)
Q Consensus 292 g~I~iwDl~s~~~~~~~~~~~~------~I~sl~~spdg~~Lasgs------------~dg~I~iwDl~t~~~~~~~~-~ 352 (715)
+.|+|||++++++...+..|.. .+..+.|++++.++++++ .++.|+|||..+++.+..+. .
T Consensus 318 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~ 397 (435)
T 4e54_B 318 SEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDP 397 (435)
T ss_dssp SCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCS
T ss_pred CEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCC
Confidence 9999999999988877765432 234556777777777664 33579999999999988765 6
Q ss_pred CCCCeEEE-EEccCCCCEEEEEeCCCcEEEEEcCCCC
Q 005096 353 HRKDVTAL-AWHPFHEEYFVSGSLDGSIFHWLVGHET 388 (715)
Q Consensus 353 h~~~V~~l-~~sp~~~~~l~sgs~DG~I~iwd~~~~~ 388 (715)
|...|.++ +|+| ++.+|++|+ |+.|+|||+++++
T Consensus 398 ~~~~v~s~~~fsp-dg~~lasg~-d~~i~iW~~~~gk 432 (435)
T 4e54_B 398 ESSGISSLNEFNP-MGDTLASAM-GYHILIWSQQEAR 432 (435)
T ss_dssp SCCCCCCEEEECT-TSSCEEEEC-SSEEEECCCC---
T ss_pred CCCcEEEEEEECC-CCCEEEEEc-CCcEEEEECCcCe
Confidence 77888887 6999 788888876 7899999997764
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-31 Score=296.40 Aligned_cols=244 Identities=19% Similarity=0.392 Sum_probs=206.1
Q ss_pred cCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc-----------eeeeecCCC------------CCeEEEEEecCC-
Q 005096 185 HDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNN-----------VKANKSAHK------------ESVRDLSFCRTD- 240 (715)
Q Consensus 185 h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~-----------~~~~~~~h~------------~~I~~l~~spd~- 240 (715)
+.+.|++++|++++++|++|+.||.|+|||+.+++ ....+..|. ..|.+++|++++
T Consensus 27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~ 106 (447)
T 3dw8_B 27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKN 106 (447)
T ss_dssp GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCS
T ss_pred ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCC
Confidence 57899999999999999999999999999998776 467778888 889999999998
Q ss_pred -CEEEEEECCCcEEEEECCCCeeE---------------------------------------EE-ecccCCceEEEEEc
Q 005096 241 -LKFCSCSDDTTVKVWDFARCQEE---------------------------------------RS-LTGHGWDVKSVDWH 279 (715)
Q Consensus 241 -~~Las~s~Dg~V~iwdl~~~~~~---------------------------------------~~-l~~~~~~I~si~~s 279 (715)
.+|++++.|++|++||+.+.... .. ..+|...|.+++|+
T Consensus 107 ~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 186 (447)
T 3dw8_B 107 AAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISIN 186 (447)
T ss_dssp SSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEEC
T ss_pred cceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEc
Confidence 79999999999999998764432 12 35789999999999
Q ss_pred CCCCEEEEEeCCCcEEEEECCC-CceeEE-------eccCCCceEEEEEcCCC-CEEEEEECCCeEEEEECCCCeE----
Q 005096 280 PTKSLLVSGGKDSLVKLWDAKS-GRELCS-------FHGHKNMVLCVKWNQNG-NWVLTASKDQIIKLYDIRAMKE---- 346 (715)
Q Consensus 280 pdg~~L~sgs~Dg~I~iwDl~s-~~~~~~-------~~~~~~~I~sl~~spdg-~~Lasgs~dg~I~iwDl~t~~~---- 346 (715)
+++++|+++ .|+.|+|||+++ ++.+.. +..|...|++++|++++ ++|++++.|+.|+|||+++++.
T Consensus 187 ~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 265 (447)
T 3dw8_B 187 SDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRH 265 (447)
T ss_dssp TTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTT
T ss_pred CCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccce
Confidence 999999998 899999999994 444442 45788999999999998 9999999999999999999887
Q ss_pred EEEeecCCC------------CeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCC--------------
Q 005096 347 LESFRGHRK------------DVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNT-------------- 400 (715)
Q Consensus 347 ~~~~~~h~~------------~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~-------------- 400 (715)
+..+..|.. .|.+++|++ ++.+|++++. +.|+|||++........+..|...
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~ 343 (447)
T 3dw8_B 266 SKLFEEPEDPSNRSFFSEIISSISDVKFSH-SGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIF 343 (447)
T ss_dssp CEEECCC-----CCHHHHHTTCEEEEEECT-TSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGG
T ss_pred eeEeccCCCccccccccccCceEEEEEECC-CCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccccc
Confidence 788888876 899999999 8999999998 999999998744444444455431
Q ss_pred -EEEEEEcCCCCEEEEEECCCeEEEEecCCCC
Q 005096 401 -VWDLAWHPIGYLLCSGSNDHTTKFWCRNRPG 431 (715)
Q Consensus 401 -V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~ 431 (715)
+..++|++++.+|++++.||.|+|||+....
T Consensus 344 ~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~ 375 (447)
T 3dw8_B 344 DKFECCWNGSDSVVMTGSYNNFFRMFDRNTKR 375 (447)
T ss_dssp CCCCEEECTTSSEEEEECSTTEEEEEETTTCC
T ss_pred cceEEEECCCCCEEEEeccCCEEEEEEcCCCc
Confidence 3349999999999999999999999997644
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-31 Score=295.60 Aligned_cols=253 Identities=21% Similarity=0.414 Sum_probs=223.6
Q ss_pred eEEEEecCCCCccEEEEEEcCC-CCEEEEEeCCCeEEEEeCCC----------CceEEEEeccCCCEEEEEEcCCCC-EE
Q 005096 134 KFVHTSLNKNRCSINRVLWTPT-GRRLITGSQSGEFTLWNGQS----------FNFEMILQAHDHAIRSMVWSHNDN-WM 201 (715)
Q Consensus 134 ~~~~~~l~~H~~~I~~l~~spd-g~~Latgs~dg~I~Iwd~~~----------~~~~~~l~~h~~~V~~l~~spdg~-~L 201 (715)
++....+..|.+.|++++|+++ +++|++++.||.|+|||+.+ .+.+..+..|...|++++|+++++ +|
T Consensus 118 ~~~~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l 197 (430)
T 2xyi_A 118 KIEIEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYL 197 (430)
T ss_dssp CEEEEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEE
T ss_pred ceEEEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeE
Confidence 4445566789999999999997 68999999999999999876 677888999999999999999988 99
Q ss_pred EEEeCCCcEEEEeCCCCce-------eeeecCCCCCeEEEEEec-CCCEEEEEECCCcEEEEECCCC---eeEEEecccC
Q 005096 202 VSGDDGGAIKYWQNNMNNV-------KANKSAHKESVRDLSFCR-TDLKFCSCSDDTTVKVWDFARC---QEERSLTGHG 270 (715)
Q Consensus 202 ~tgs~dg~I~iwd~~~~~~-------~~~~~~h~~~I~~l~~sp-d~~~Las~s~Dg~V~iwdl~~~---~~~~~l~~~~ 270 (715)
++|+.||.|+||++..... ...+..|...|.+++|++ ++.+|++++.|+.|++||+++. +.+..+..|.
T Consensus 198 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 277 (430)
T 2xyi_A 198 LSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHT 277 (430)
T ss_dssp EEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCS
T ss_pred EEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCC
Confidence 9999999999999987322 345568999999999999 6789999999999999999876 5667777899
Q ss_pred CceEEEEEcCCCC-EEEEEeCCCcEEEEECCC-CceeEEeccCCCceEEEEEcCCCC-EEEEEECCCeEEEEECCC----
Q 005096 271 WDVKSVDWHPTKS-LLVSGGKDSLVKLWDAKS-GRELCSFHGHKNMVLCVKWNQNGN-WVLTASKDQIIKLYDIRA---- 343 (715)
Q Consensus 271 ~~I~si~~spdg~-~L~sgs~Dg~I~iwDl~s-~~~~~~~~~~~~~I~sl~~spdg~-~Lasgs~dg~I~iwDl~t---- 343 (715)
..|++|+|++++. +|++++.|+.|+|||+++ ...+..+..|...|++++|+++++ +|++++.|+.|+|||+++
T Consensus 278 ~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~ 357 (430)
T 2xyi_A 278 AEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEE 357 (430)
T ss_dssp SCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCC
T ss_pred CCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccc
Confidence 9999999999987 789999999999999998 567888888999999999999885 789999999999999987
Q ss_pred ----------CeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCC
Q 005096 344 ----------MKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGH 386 (715)
Q Consensus 344 ----------~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~ 386 (715)
.+.+..+.+|...|++++|++++..+|++++.||.|+||++..
T Consensus 358 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~ 410 (430)
T 2xyi_A 358 QSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAE 410 (430)
T ss_dssp CCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECH
T ss_pred cCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEccc
Confidence 3667788889999999999994444999999999999999864
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-30 Score=286.93 Aligned_cols=279 Identities=12% Similarity=0.039 Sum_probs=238.8
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEE-----EEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc
Q 005096 145 CSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEM-----ILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNN 219 (715)
Q Consensus 145 ~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~-----~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~ 219 (715)
..+.+++|+++++++++++.++.|++||+.+++.+. .+..|...|.+++|+++++++++++.|+.|++||+++++
T Consensus 123 ~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~ 202 (433)
T 3bws_A 123 FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLA 202 (433)
T ss_dssp SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCC
T ss_pred CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCce
Confidence 456699999977778888889999999999998887 345788899999999999999999999999999999998
Q ss_pred eeeeecCCCCCeEEEEEecCCCEEEEEE-CCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEe--------C
Q 005096 220 VKANKSAHKESVRDLSFCRTDLKFCSCS-DDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGG--------K 290 (715)
Q Consensus 220 ~~~~~~~h~~~I~~l~~spd~~~Las~s-~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs--------~ 290 (715)
.+..+..|...+.+++|+++++++++++ .|+.|++||+++++.+..+.. ...+.+++|++++++|++++ .
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~~g~~l~~~~~~~~~~~~~ 281 (433)
T 3bws_A 203 YKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDK-IGLPRGLLLSKDGKELYIAQFSASNQESG 281 (433)
T ss_dssp EEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCC-CSEEEEEEECTTSSEEEEEEEESCTTCSC
T ss_pred EEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecC-CCCceEEEEcCCCCEEEEEECCCCccccC
Confidence 8888888999999999999999886555 799999999999988887765 45699999999999999888 5
Q ss_pred CCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEE-EEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCE
Q 005096 291 DSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWV-LTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEY 369 (715)
Q Consensus 291 Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~L-asgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~ 369 (715)
|+.|++||+++++.+..+. +...+.+++|++++++| ++++.|+.|++||+++++.+..+. +...+.+++|++ ++++
T Consensus 282 dg~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~-dg~~ 358 (433)
T 3bws_A 282 GGRLGIYSMDKEKLIDTIG-PPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIALSP-DGKY 358 (433)
T ss_dssp CEEEEEEETTTTEEEEEEE-EEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECT-TSSE
T ss_pred CCeEEEEECCCCcEEeecc-CCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec-CCCCCCeEEEcC-CCCE
Confidence 8899999999988776663 55678999999999765 556889999999999999888876 677899999999 6777
Q ss_pred EEEEeC---------------CCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEEC-CCeEEEEecCC
Q 005096 370 FVSGSL---------------DGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSN-DHTTKFWCRNR 429 (715)
Q Consensus 370 l~sgs~---------------DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~-Dg~I~iWdl~~ 429 (715)
|++++. ||.|++||+.+.+....+. +...+.+++|++++++|++++. |+.|++|+++.
T Consensus 359 l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 359 LYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWE--AGNQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp EEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEE--CSSSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred EEEEecCCCccccccccccccceEEEEEECCCCcEEEEec--CCCCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence 777665 5799999998876554443 2568999999999999998875 99999999863
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-32 Score=303.64 Aligned_cols=265 Identities=12% Similarity=0.105 Sum_probs=220.4
Q ss_pred ecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 005096 139 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN 218 (715)
Q Consensus 139 ~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~ 218 (715)
..+.-...|.+|+|++||++||+++.|++|+ |.+..+ .+.+|...|.+++|+|+| .++.+.+|+.+..
T Consensus 10 ~~~~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~---~l~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~~ 77 (588)
T 2j04_A 10 DRKEFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAK---DINCNSKNLFHVKEFPLE-------FENKLDFELAQQN 77 (588)
T ss_dssp CSCCCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCS---CCSSBGGGTEEEEEECCC-------CCCTTTTSCCCSS
T ss_pred cHhHhhccEEEEEECCCCCEEEEEcCCceee--cccccc---eecCCCccEEEEEECCCC-------CcceEEEEeCCCc
Confidence 3455668999999999999999999999999 755554 347899999999999998 4666666654332
Q ss_pred ceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCC-----ceEEEEEcCCCCEEEEEeCCCc
Q 005096 219 NVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGW-----DVKSVDWHPTKSLLVSGGKDSL 293 (715)
Q Consensus 219 ~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~-----~I~si~~spdg~~L~sgs~Dg~ 293 (715)
. ...+ .+...|.+++|+|||.+||+++.||+|+|||.+. .+..+. |.. .|.+++|+|||++|++|+.||+
T Consensus 78 ~-~~~~-~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGt 152 (588)
T 2j04_A 78 G-LLNS-QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGE 152 (588)
T ss_dssp C-SSTT-SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSE
T ss_pred e-Eeec-CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCE
Confidence 2 2222 4578999999999999999999999999999644 556666 554 5999999999999999999999
Q ss_pred EEEEECCCCce-------eEEe----ccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeE---EEEe-ecCCCCeE
Q 005096 294 VKLWDAKSGRE-------LCSF----HGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKE---LESF-RGHRKDVT 358 (715)
Q Consensus 294 I~iwDl~s~~~-------~~~~----~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~---~~~~-~~h~~~V~ 358 (715)
|+|||+++++. +.++ .+|..+|.+++|+||+ |++++.|+.|++||+.+.+. ..++ ..|...|.
T Consensus 153 VkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~ 230 (588)
T 2j04_A 153 LQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKIT 230 (588)
T ss_dssp EEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCC
T ss_pred EEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEE
Confidence 99999998753 5665 5677899999999999 88889999999999988773 3456 37889999
Q ss_pred EEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEE--cCCCCEEEEEECCCeEEEEecC
Q 005096 359 ALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAW--HPIGYLLCSGSNDHTTKFWCRN 428 (715)
Q Consensus 359 ~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~--spdg~~L~sgs~Dg~I~iWdl~ 428 (715)
+++|+ +.+|++++ ++.|++||+.......... +|.+.|++++| ++|+..|+++++||+ ++|..+
T Consensus 231 svaFs---g~~LASa~-~~tIkLWd~~~~~~~~~~~-gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 231 DLKIV---DYKVVLTC-PGYVHKIDLKNYSISSLKT-GSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED 296 (588)
T ss_dssp CEEEE---TTEEEEEC-SSEEEEEETTTTEEEEEEC-SCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS
T ss_pred EEEEE---CCEEEEEe-CCeEEEEECCCCeEEEEEc-CCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec
Confidence 99998 47888887 6999999998766533333 69999999999 999999999999999 999985
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-31 Score=289.98 Aligned_cols=246 Identities=13% Similarity=0.155 Sum_probs=202.3
Q ss_pred EecCCCCccEEEEEEcCCCCEEEEEe-----------CCCeEEEEeCCCCceEEE----E-----eccCCCEEEEEEcCC
Q 005096 138 TSLNKNRCSINRVLWTPTGRRLITGS-----------QSGEFTLWNGQSFNFEMI----L-----QAHDHAIRSMVWSHN 197 (715)
Q Consensus 138 ~~l~~H~~~I~~l~~spdg~~Latgs-----------~dg~I~Iwd~~~~~~~~~----l-----~~h~~~V~~l~~spd 197 (715)
..|.+|.+.|.+++++ ++.+++|+ .|+.|++|++.+.+.... . ..++..+.+++|++|
T Consensus 67 ~~l~~~~~~v~s~~~~--~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpD 144 (365)
T 4h5i_A 67 FALEDNDDSPTAIDAS--KGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISRE 144 (365)
T ss_dssp EECCTTSCCCCEEEEE--TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTT
T ss_pred EEccCCCCceEEEEeC--CCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCC
Confidence 4678899999998875 45677664 467899998765432211 1 123456899999999
Q ss_pred CCEEEEEe--CCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEE--EecccCCce
Q 005096 198 DNWMVSGD--DGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEER--SLTGHGWDV 273 (715)
Q Consensus 198 g~~L~tgs--~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~--~l~~~~~~I 273 (715)
|++|++++ .|++|+|||+++++.+..+. |...|.+|+|++|+++|++++.| .+++|+..+++.+. ....|...|
T Consensus 145 g~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v 222 (365)
T 4h5i_A 145 GTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSL 222 (365)
T ss_dssp SSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEE
T ss_pred CCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEeccce-eEEEEEeccCcceeeeecCCCCCCE
Confidence 99987554 78999999999998888775 77789999999999999999865 56667666665543 345678889
Q ss_pred EEEEEcCCCCEEEEEeCCC----cEEEEECCCCce----eEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCe
Q 005096 274 KSVDWHPTKSLLVSGGKDS----LVKLWDAKSGRE----LCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMK 345 (715)
Q Consensus 274 ~si~~spdg~~L~sgs~Dg----~I~iwDl~s~~~----~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~ 345 (715)
.+++|++++++|++++.|+ .|++||+..... ...+..|...|++++|+||+++||+|+.|+.|+|||+++++
T Consensus 223 ~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~ 302 (365)
T 4h5i_A 223 SKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLS 302 (365)
T ss_dssp EEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTE
T ss_pred EEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCc
Confidence 9999999999999999887 688899876643 34567788999999999999999999999999999999999
Q ss_pred EEEEe-ecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCC
Q 005096 346 ELESF-RGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHET 388 (715)
Q Consensus 346 ~~~~~-~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~ 388 (715)
.+..+ .+|...|++|+|+| ++++|++++.|++|+|||+....
T Consensus 303 ~~~~~~~gH~~~V~~v~fSp-dg~~laS~S~D~tvrvw~ip~~~ 345 (365)
T 4h5i_A 303 MSKIFKQAHSFAITEVTISP-DSTYVASVSAANTIHIIKLPLNY 345 (365)
T ss_dssp EEEEETTSSSSCEEEEEECT-TSCEEEEEETTSEEEEEECCTTT
T ss_pred EEEEecCcccCCEEEEEECC-CCCEEEEEeCCCeEEEEEcCCCC
Confidence 99885 68999999999999 89999999999999999996543
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-31 Score=278.61 Aligned_cols=280 Identities=13% Similarity=0.143 Sum_probs=232.7
Q ss_pred CcccchhhhhcccccccceEeeehhhheeeEEEEEeccCCCccccccCchhhhcCccceeecCCCCCceeeeEEEEecCC
Q 005096 63 AHGDSFAAKRMRKLTQRRAVDYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSFAAKFVHTSLNK 142 (715)
Q Consensus 63 ~h~~~~~~~r~~~~~~~~~~~~~~~~~~~~~irvW~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 142 (715)
+|...+.+..+.. ...++.+...+..|++|+....+.. .....+.+
T Consensus 9 ~h~~~v~~~~~s~-----~~~~l~~~~~d~~v~iw~~~~~~~~-----------------------------~~~~~~~~ 54 (342)
T 1yfq_A 9 APKDYISDIKIIP-----SKSLLLITSWDGSLTVYKFDIQAKN-----------------------------VDLLQSLR 54 (342)
T ss_dssp CCSSCEEEEEEEG-----GGTEEEEEETTSEEEEEEEETTTTE-----------------------------EEEEEEEE
T ss_pred CCCCcEEEEEEcC-----CCCEEEEEcCCCeEEEEEeCCCCcc-----------------------------ccceeeee
Confidence 4555555544433 2234555567789999987643210 01122347
Q ss_pred CCccEEEEEEcCCCC-EEEEEeCCCeEEEEeC-CCCceEEEEec--cCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCC-
Q 005096 143 NRCSINRVLWTPTGR-RLITGSQSGEFTLWNG-QSFNFEMILQA--HDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNM- 217 (715)
Q Consensus 143 H~~~I~~l~~spdg~-~Latgs~dg~I~Iwd~-~~~~~~~~l~~--h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~- 217 (715)
|...|++++|+++++ +|++++.||.|++||+ .+++. ..+.. |...|.+++|++ +++|++++.|+.|++||+.+
T Consensus 55 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~ 132 (342)
T 1yfq_A 55 YKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNY 132 (342)
T ss_dssp CSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHH
T ss_pred cCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEccccc
Confidence 899999999999999 9999999999999999 77654 77788 999999999999 99999999999999999887
Q ss_pred --------CceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCC-Ce--eEEEecccCCceEEEEEcC-CCCEE
Q 005096 218 --------NNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFAR-CQ--EERSLTGHGWDVKSVDWHP-TKSLL 285 (715)
Q Consensus 218 --------~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~-~~--~~~~l~~~~~~I~si~~sp-dg~~L 285 (715)
.+.+..+. +...|.+++|++++ |++++.|+.|++||+++ .. .......+...|.+++|++ ++++|
T Consensus 133 ~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l 209 (342)
T 1yfq_A 133 GDGVIAVKNLNSNNTK-VKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGY 209 (342)
T ss_dssp TTBCEEEEESCSSSSS-SCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEE
T ss_pred ccccccccCCeeeEEe-eCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEE
Confidence 66555555 88999999999876 99999999999999987 43 3344556788999999999 99999
Q ss_pred EEEeCCCcEEEEECCCC------ceeEEeccCCC---------ceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEe
Q 005096 286 VSGGKDSLVKLWDAKSG------RELCSFHGHKN---------MVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESF 350 (715)
Q Consensus 286 ~sgs~Dg~I~iwDl~s~------~~~~~~~~~~~---------~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~ 350 (715)
++++.|+.|+|||++.. +.+..+..|.. .|++++|++++++|++++.||.|++||+++++.+..+
T Consensus 210 ~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 289 (342)
T 1yfq_A 210 ACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNF 289 (342)
T ss_dssp EEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEEC
T ss_pred EEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhh
Confidence 99999999999999877 77778877755 8999999999999999999999999999999999999
Q ss_pred ecC-CCCeEEEEEccCCCCEEEEEeCCCc-EEEEEc
Q 005096 351 RGH-RKDVTALAWHPFHEEYFVSGSLDGS-IFHWLV 384 (715)
Q Consensus 351 ~~h-~~~V~~l~~sp~~~~~l~sgs~DG~-I~iwd~ 384 (715)
..| ...|++++ + ++.+|++++.||. .+.|..
T Consensus 290 ~~~h~~~v~~~~--~-~~~~l~s~s~Dg~~~~~~~~ 322 (342)
T 1yfq_A 290 AKFNEDSVVKIA--C-SDNILCLATSDDTFKTNAAI 322 (342)
T ss_dssp CCCSSSEEEEEE--E-CSSEEEEEEECTHHHHCSSS
T ss_pred hcccCCCceEec--C-CCCeEEEEecCCcccccccc
Confidence 998 99999999 6 8899999999998 555553
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.98 E-value=3.9e-31 Score=313.93 Aligned_cols=254 Identities=20% Similarity=0.362 Sum_probs=220.8
Q ss_pred EEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCC--CCceeeeecCCCCCeEEEEEecC--CCEEEEEECCCcEEE
Q 005096 179 EMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNN--MNNVKANKSAHKESVRDLSFCRT--DLKFCSCSDDTTVKV 254 (715)
Q Consensus 179 ~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~--~~~~~~~~~~h~~~I~~l~~spd--~~~Las~s~Dg~V~i 254 (715)
+..+.+|.+.|++++|++++++|++|+.||.|+|||+. +......+..|...|.+++|+++ +++|++++.||+|++
T Consensus 2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~v 81 (753)
T 3jro_A 2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI 81 (753)
T ss_dssp ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEE
T ss_pred eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEE
Confidence 35678999999999999999999999999999999988 45677788899999999999987 899999999999999
Q ss_pred EECCCCe--eEEEecccCCceEEEEEcCC--CCEEEEEeCCCcEEEEECCCCc--eeEEeccCCCceEEEEEcC------
Q 005096 255 WDFARCQ--EERSLTGHGWDVKSVDWHPT--KSLLVSGGKDSLVKLWDAKSGR--ELCSFHGHKNMVLCVKWNQ------ 322 (715)
Q Consensus 255 wdl~~~~--~~~~l~~~~~~I~si~~spd--g~~L~sgs~Dg~I~iwDl~s~~--~~~~~~~~~~~I~sl~~sp------ 322 (715)
||+.+++ .+..+..|...|++++|+++ +++|++++.||.|++||++++. ....+..|...|.+++|++
T Consensus 82 wd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~ 161 (753)
T 3jro_A 82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED 161 (753)
T ss_dssp EEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC----
T ss_pred EECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccc
Confidence 9998886 67778889999999999999 9999999999999999998773 4456678899999999999
Q ss_pred -------CCCEEEEEECCCeEEEEECCCC----eEEEEeecCCCCeEEEEEccCC--CCEEEEEeCCCcEEEEEcCCCCc
Q 005096 323 -------NGNWVLTASKDQIIKLYDIRAM----KELESFRGHRKDVTALAWHPFH--EEYFVSGSLDGSIFHWLVGHETP 389 (715)
Q Consensus 323 -------dg~~Lasgs~dg~I~iwDl~t~----~~~~~~~~h~~~V~~l~~sp~~--~~~l~sgs~DG~I~iwd~~~~~~ 389 (715)
++++|++++.||.|++||++++ ..+..+..|...|++++|++++ +.+|++++.||.|++||+++...
T Consensus 162 ~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~ 241 (753)
T 3jro_A 162 GEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQG 241 (753)
T ss_dssp -----CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSS
T ss_pred cccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCC
Confidence 5899999999999999999877 5677888999999999999943 89999999999999999987642
Q ss_pred e----EEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCCCCC
Q 005096 390 Q----VEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGD 432 (715)
Q Consensus 390 ~----~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~~ 432 (715)
. ......|...|++++|++++.+|++++.||.|+||+++..+.
T Consensus 242 ~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~~ 288 (753)
T 3jro_A 242 PWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGK 288 (753)
T ss_dssp CCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSSSC
T ss_pred cceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCCC
Confidence 1 122234788999999999999999999999999999985443
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2e-30 Score=273.73 Aligned_cols=300 Identities=15% Similarity=0.172 Sum_probs=222.1
Q ss_pred CCCCCcccchhhhhcccccccceEeeehhhheeeEEEEEeccCCCccccccCchhhhcCccceeecCCCCCceeeeEEEE
Q 005096 59 PPYDAHGDSFAAKRMRKLTQRRAVDYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSFAAKFVHT 138 (715)
Q Consensus 59 ~~~~~h~~~~~~~r~~~~~~~~~~~~~~~~~~~~~irvW~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 138 (715)
..+.+|...+....+.. ...++.+...++.|++|+....... .....
T Consensus 5 ~~~~gH~~~v~~~~~~~-----~~~~l~~~~~dg~i~iw~~~~~~~~----------------------------~~~~~ 51 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDF-----YGRHVATCSSDQHIKVFKLDKDTSN----------------------------WELSD 51 (351)
T ss_dssp CEECCCSSCEEEEEECS-----SSSEEEEEETTSEEEEEEECSSSCC----------------------------EEEEE
T ss_pred ccCcccccceeEEEEcC-----CCCEEEEeeCCCeEEEEECCCCCCc----------------------------ceecc
Confidence 34567777776655543 3346666777899999997643211 01233
Q ss_pred ecCCCCccEEEEEEcC--CCCEEEEEeCCCeEEEEeCCCC---------ceEEEEeccCCCEEEEEEcCC--CCEEEEEe
Q 005096 139 SLNKNRCSINRVLWTP--TGRRLITGSQSGEFTLWNGQSF---------NFEMILQAHDHAIRSMVWSHN--DNWMVSGD 205 (715)
Q Consensus 139 ~l~~H~~~I~~l~~sp--dg~~Latgs~dg~I~Iwd~~~~---------~~~~~l~~h~~~V~~l~~spd--g~~L~tgs 205 (715)
.+.+|...|++++|++ |+++|++++.||.|+|||+.++ +.+..+..|...|.+++|+++ +++|++++
T Consensus 52 ~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~ 131 (351)
T 3f3f_A 52 SWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLG 131 (351)
T ss_dssp EEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEE
T ss_pred eeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEec
Confidence 5678999999999999 6999999999999999999876 567888899999999999999 99999999
Q ss_pred CCCcEEEEeCCCCceeeeec-------------CCCCCeEEEEEecC---CCEEEEEECCCcEEEEECCCCee--EEEec
Q 005096 206 DGGAIKYWQNNMNNVKANKS-------------AHKESVRDLSFCRT---DLKFCSCSDDTTVKVWDFARCQE--ERSLT 267 (715)
Q Consensus 206 ~dg~I~iwd~~~~~~~~~~~-------------~h~~~I~~l~~spd---~~~Las~s~Dg~V~iwdl~~~~~--~~~l~ 267 (715)
.|+.|++||+.+++....+. .+...+.+++|+++ +.+|++++.|+.+.+|+....+. +..+.
T Consensus 132 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (351)
T 3f3f_A 132 NDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLP 211 (351)
T ss_dssp TTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECC
T ss_pred CCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecC
Confidence 99999999998776443332 57789999999997 89999999999998888877654 66778
Q ss_pred ccCCceEEEEEcCCC----CEEEEEeCCCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEE----ECCCeEEEE
Q 005096 268 GHGWDVKSVDWHPTK----SLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTA----SKDQIIKLY 339 (715)
Q Consensus 268 ~~~~~I~si~~spdg----~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasg----s~dg~I~iw 339 (715)
+|...|++++|++++ ++|++++.|+.|++||++++............+....++.+...++.+ .....+.+|
T Consensus 212 ~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (351)
T 3f3f_A 212 GHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQ 291 (351)
T ss_dssp CCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC---------------------------------------C
T ss_pred CCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeec
Confidence 899999999999998 899999999999999999776555444344444444444444433333 344567777
Q ss_pred ECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEE
Q 005096 340 DIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVE 392 (715)
Q Consensus 340 Dl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~ 392 (715)
+..+.+.+..+.+|...|++++|++ ++++|++++.||.|+|||+.+......
T Consensus 292 ~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~dg~v~iw~~~~~~~~~~ 343 (351)
T 3f3f_A 292 SNLQVELLSEHDDHNGEVWSVSWNL-TGTILSSAGDDGKVRLWKATYSNEFKC 343 (351)
T ss_dssp CSEEEEEEEEECTTSSCEEEEEECS-SSCCEEEEETTSCEEEEEECTTSCEEE
T ss_pred ccccccEEEEEecccccEEEEEEcC-CCCEEEEecCCCcEEEEecCcCcchhh
Confidence 7777888999999999999999999 789999999999999999987765443
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.97 E-value=6.8e-31 Score=287.57 Aligned_cols=230 Identities=14% Similarity=0.189 Sum_probs=174.9
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCcee-----eeecCCCCCeEEEEEec--------CCCEEEEEECCCcEEEEECCCCee
Q 005096 196 HNDNWMVSGDDGGAIKYWQNNMNNVK-----ANKSAHKESVRDLSFCR--------TDLKFCSCSDDTTVKVWDFARCQE 262 (715)
Q Consensus 196 pdg~~L~tgs~dg~I~iwd~~~~~~~-----~~~~~h~~~I~~l~~sp--------d~~~Las~s~Dg~V~iwdl~~~~~ 262 (715)
+++++|++++.|++|+|||+++++.. ..+.+|.+.|++++|++ |+++||+++.|++|+|||+++...
T Consensus 99 ~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~ 178 (393)
T 4gq1_A 99 VYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGP 178 (393)
T ss_dssp EEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEE
T ss_pred CCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCce
Confidence 34567999999999999999887543 34678999999999997 788999999999999999998888
Q ss_pred EEEecccCCceEEEEEcCCCC-EEEEEeCCCcEEEEECCCCceeEEe-------------------------ccCCCceE
Q 005096 263 ERSLTGHGWDVKSVDWHPTKS-LLVSGGKDSLVKLWDAKSGRELCSF-------------------------HGHKNMVL 316 (715)
Q Consensus 263 ~~~l~~~~~~I~si~~spdg~-~L~sgs~Dg~I~iwDl~s~~~~~~~-------------------------~~~~~~I~ 316 (715)
+..+..|...|.+++|+|++. +|++++.|++|++||+++++..... .+|...+.
T Consensus 179 ~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~ 258 (393)
T 4gq1_A 179 ILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLA 258 (393)
T ss_dssp EEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCS
T ss_pred eeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccce
Confidence 888888999999999999874 8999999999999999887643322 24667788
Q ss_pred EEEEc-CCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEE------------------Ecc-CCCCEEEEEeCC
Q 005096 317 CVKWN-QNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALA------------------WHP-FHEEYFVSGSLD 376 (715)
Q Consensus 317 sl~~s-pdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~------------------~sp-~~~~~l~sgs~D 376 (715)
++.|+ +|++.|++++.|+.|++||+.+++....+..+...+..+. +++ .++.++++|+.|
T Consensus 259 ~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~D 338 (393)
T 4gq1_A 259 NVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQH 338 (393)
T ss_dssp EEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTT
T ss_pred eeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCC
Confidence 89987 6999999999999999999998877666655544433332 332 234467788899
Q ss_pred CcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEec
Q 005096 377 GSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCR 427 (715)
Q Consensus 377 G~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl 427 (715)
|.|+|||+.++....... .|...|++++|++||++||+++.|| +.+|++
T Consensus 339 g~V~lwd~~~~~~~~~~~-~~~~~V~svafspdG~~LA~as~~G-v~lvrL 387 (393)
T 4gq1_A 339 GLIQLINTYEKDSNSIPI-QLGMPIVDFCWHQDGSHLAIATEGS-VLLTRL 387 (393)
T ss_dssp TEEEEEETTCTTCCEEEE-ECSSCEEEEEECTTSSEEEEEESSE-EEEEEE
T ss_pred CEEEEEECCCCcEEEEec-CCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEE
Confidence 999999998887765554 5788999999999999999998766 556654
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.97 E-value=5.9e-29 Score=269.94 Aligned_cols=266 Identities=14% Similarity=0.090 Sum_probs=224.2
Q ss_pred CEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEE-EEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEE
Q 005096 157 RRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWM-VSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLS 235 (715)
Q Consensus 157 ~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L-~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~ 235 (715)
.++++++.|+.|++||+++++.+..+..|. .+.+++|++++++| ++++.|+.|++||+.+++.+..+..+. .+.+++
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~ 80 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVA 80 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEE
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceE
Confidence 357788999999999999999998888765 58999999999987 677789999999999998888776555 899999
Q ss_pred EecCCCEEEEEE-CCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEE-EEEeCCCcEEEEECCCCceeEEeccCCC
Q 005096 236 FCRTDLKFCSCS-DDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLL-VSGGKDSLVKLWDAKSGRELCSFHGHKN 313 (715)
Q Consensus 236 ~spd~~~Las~s-~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L-~sgs~Dg~I~iwDl~s~~~~~~~~~~~~ 313 (715)
|++++++|++++ .|+.|++||+++++.+..+.. ...+.+++|++++++| ++++.|+.|++||+++++.+..+..+ .
T Consensus 81 ~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~ 158 (391)
T 1l0q_A 81 VSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKT-GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-R 158 (391)
T ss_dssp ECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-S
T ss_pred ECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeC-CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC-C
Confidence 999999886555 679999999999988887774 4578999999999977 67778999999999999988887754 5
Q ss_pred ceEEEEEcCCCCEE-EEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEe---CCCcEEEEEcCCCCc
Q 005096 314 MVLCVKWNQNGNWV-LTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGS---LDGSIFHWLVGHETP 389 (715)
Q Consensus 314 ~I~sl~~spdg~~L-asgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs---~DG~I~iwd~~~~~~ 389 (715)
.+.+++|++++++| ++++.++.|++||+++++.+..+. +...+.+++|++ ++++|++++ .++.|++||+++...
T Consensus 159 ~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~-~g~~l~~~~~~~~~~~v~~~d~~~~~~ 236 (391)
T 1l0q_A 159 SPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK-VEAAPSGIAVNP-EGTKAYVTNVDKYFNTVSMIDTGTNKI 236 (391)
T ss_dssp SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CSSEEEEEEECT-TSSEEEEEEECSSCCEEEEEETTTTEE
T ss_pred CcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe-cCCCccceEECC-CCCEEEEEecCcCCCcEEEEECCCCeE
Confidence 57999999999988 566788999999999998887776 456899999999 677776666 789999999988765
Q ss_pred eEEEeeccCCCEEEEEEcCCCCEE-EEEECCCeEEEEecCCC
Q 005096 390 QVEIHNVHDNTVWDLAWHPIGYLL-CSGSNDHTTKFWCRNRP 430 (715)
Q Consensus 390 ~~~~~~~h~~~V~~l~~spdg~~L-~sgs~Dg~I~iWdl~~~ 430 (715)
...+. .+ ..+.+++|++++++| ++++.|+.|++||+...
T Consensus 237 ~~~~~-~~-~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~ 276 (391)
T 1l0q_A 237 TARIP-VG-PDPAGIAVTPDGKKVYVALSFXNTVSVIDTATN 276 (391)
T ss_dssp EEEEE-CC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred EEEEe-cC-CCccEEEEccCCCEEEEEcCCCCEEEEEECCCC
Confidence 54443 33 468999999999877 66788999999999753
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.97 E-value=8.2e-29 Score=268.84 Aligned_cols=280 Identities=13% Similarity=0.097 Sum_probs=224.7
Q ss_pred ccEEEEEEcCCCCEE-EEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEE-EeCCCcEEEEeCCCCceee
Q 005096 145 CSINRVLWTPTGRRL-ITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVS-GDDGGAIKYWQNNMNNVKA 222 (715)
Q Consensus 145 ~~I~~l~~spdg~~L-atgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~t-gs~dg~I~iwd~~~~~~~~ 222 (715)
..+.+++|++++++| ++++.|+.|++||+.+++.+..+..+. .+.+++|++++++|++ ++.++.|++||+.+++.+.
T Consensus 32 ~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~ 110 (391)
T 1l0q_A 32 SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAG 110 (391)
T ss_dssp SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred CCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEE
Confidence 348999999999987 566689999999999999988887665 9999999999998854 5567999999999998877
Q ss_pred eecCCCCCeEEEEEecCCCEE-EEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEE-EEEeCCCcEEEEECC
Q 005096 223 NKSAHKESVRDLSFCRTDLKF-CSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLL-VSGGKDSLVKLWDAK 300 (715)
Q Consensus 223 ~~~~h~~~I~~l~~spd~~~L-as~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L-~sgs~Dg~I~iwDl~ 300 (715)
.+.. ...+.+++|++++++| ++++.|+.|++||+.+++.+..+..+ ..+.+++|++++++| ++++.|+.|++||++
T Consensus 111 ~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~ 188 (391)
T 1l0q_A 111 TVKT-GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTV 188 (391)
T ss_dssp EEEC-SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred EEeC-CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECC
Confidence 7654 4578999999999987 67778999999999999888887754 567999999999877 567788999999999
Q ss_pred CCceeEEeccCCCceEEEEEcCCCCEEEEEE---CCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCC
Q 005096 301 SGRELCSFHGHKNMVLCVKWNQNGNWVLTAS---KDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDG 377 (715)
Q Consensus 301 s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs---~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG 377 (715)
+++.+..+. +...+.+++|++++++|++++ .++.|++||+++++.+..+..+. .+.+++|++++..++++++.|+
T Consensus 189 ~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~s~~~d~ 266 (391)
T 1l0q_A 189 TNSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP-DPAGIAVTPDGKKVYVALSFXN 266 (391)
T ss_dssp TTEEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS-SEEEEEECTTSSEEEEEETTTT
T ss_pred CCeEEEEEe-cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCC-CccEEEEccCCCEEEEEcCCCC
Confidence 998887776 566799999999999999888 68999999999999988888654 5899999994444557888999
Q ss_pred cEEEEEcCCCCceEEEeeccCCCE------E---------EEEEcCCC----------CEEEEEECCCeEEEEecCCC
Q 005096 378 SIFHWLVGHETPQVEIHNVHDNTV------W---------DLAWHPIG----------YLLCSGSNDHTTKFWCRNRP 430 (715)
Q Consensus 378 ~I~iwd~~~~~~~~~~~~~h~~~V------~---------~l~~spdg----------~~L~sgs~Dg~I~iWdl~~~ 430 (715)
.|++||+.+......+. .+.... . ...|+.+. ..|...+.|..+++|++...
T Consensus 267 ~v~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~g 343 (391)
T 1l0q_A 267 TVSVIDTATNTITATMA-VGKNPYASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQFTDLSKDATEWKWDFGDG 343 (391)
T ss_dssp EEEEEETTTTEEEEEEE-CSSSEECCSSCEEECSSCCCCCBCCEEESCCSSEEETTCCEEEEECCBSCSEEEEECSSS
T ss_pred EEEEEECCCCcEEEEEE-CCcCCCccceeeecccccccccccccccccccccccccceEEEEeCCCCceEEEEECCCC
Confidence 99999998876544433 222221 1 11122111 34566667889999998653
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=4e-29 Score=266.94 Aligned_cols=282 Identities=17% Similarity=0.293 Sum_probs=222.9
Q ss_pred EEeCCCCceEEEEeccCCCEEEEEEcCC---CCEEEEEeCCCcEEEEeCCC-Ccee-eeecCCCCCeEEEEEecCCCEEE
Q 005096 170 LWNGQSFNFEMILQAHDHAIRSMVWSHN---DNWMVSGDDGGAIKYWQNNM-NNVK-ANKSAHKESVRDLSFCRTDLKFC 244 (715)
Q Consensus 170 Iwd~~~~~~~~~l~~h~~~V~~l~~spd---g~~L~tgs~dg~I~iwd~~~-~~~~-~~~~~h~~~I~~l~~spd~~~La 244 (715)
.|+....+.+..+..|.+.|++++|+++ +++|++++.||.|+|||+++ +... ..+..|...|.+++|++++++|+
T Consensus 23 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 102 (368)
T 3mmy_A 23 TDNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVF 102 (368)
T ss_dssp CCSSCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEE
T ss_pred cCCCCCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEE
Confidence 4456677788889999999999999999 59999999999999999987 4443 67788999999999999999999
Q ss_pred EEECCCcEEEEECCCCeeEEEecccCCceEEEEE--cCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCceEEEEEcC
Q 005096 245 SCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDW--HPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQ 322 (715)
Q Consensus 245 s~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~--spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~sp 322 (715)
+++.|+.|++||+++.+.+. +..|...|++++| ++++++|++++.|+.|++||+++++.+..+..+. .+.++.+.
T Consensus 103 s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~- 179 (368)
T 3mmy_A 103 TASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE-RCYCADVI- 179 (368)
T ss_dssp EEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS-CEEEEEEE-
T ss_pred EEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC-CceEEEec-
Confidence 99999999999999987766 4569999999999 8999999999999999999999999988887554 56777766
Q ss_pred CCCEEEEEECCCeEEEEECCCCeEEEEee--cCCCCeEEEEEccCCCC----EEEEEeCCCcEEEEEcCCCC--ceEEEe
Q 005096 323 NGNWVLTASKDQIIKLYDIRAMKELESFR--GHRKDVTALAWHPFHEE----YFVSGSLDGSIFHWLVGHET--PQVEIH 394 (715)
Q Consensus 323 dg~~Lasgs~dg~I~iwDl~t~~~~~~~~--~h~~~V~~l~~sp~~~~----~l~sgs~DG~I~iwd~~~~~--~~~~~~ 394 (715)
...+++++.++.+++||++......... .+...+.++++.. +.. .+++++.||.|++||++... .....+
T Consensus 180 -~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~ 257 (368)
T 3mmy_A 180 -YPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFK-DKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTF 257 (368)
T ss_dssp -TTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEE-CTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEE
T ss_pred -CCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcc-cCCCCCCeEEEecCCCcEEEEecCCCCccccceee
Confidence 4578899999999999998765443322 2345566666655 333 39999999999999998763 223334
Q ss_pred eccCC------------CEEEEEEcCCCCEEEEEECCCeEEEEecCCCCCcccccccccCCccccceeeEEeecCCCCcc
Q 005096 395 NVHDN------------TVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGDTARDKFNMGQNQGYGEQNAVFAGRMPGNFP 462 (715)
Q Consensus 395 ~~h~~------------~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 462 (715)
..|.. .|++++|++++++|++++.||.|+|||++...... ...++......+.+..++.++
T Consensus 258 ~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~-------~~~~~~~~v~~~~~s~~g~~l 330 (368)
T 3mmy_A 258 KCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLK-------TSEQLDQPISACCFNHNGNIF 330 (368)
T ss_dssp ECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEE-------ECCCCSSCEEEEEECTTSSCE
T ss_pred eeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEE-------EecCCCCCceEEEECCCCCeE
Confidence 44554 69999999999999999999999999997532211 112333444555555555444
Q ss_pred C
Q 005096 463 L 463 (715)
Q Consensus 463 ~ 463 (715)
+
T Consensus 331 ~ 331 (368)
T 3mmy_A 331 A 331 (368)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=6.4e-29 Score=276.43 Aligned_cols=246 Identities=16% Similarity=0.141 Sum_probs=211.3
Q ss_pred cCCCCccEEEEEEcCCCCEE-EEEeCCCeEEEEeCC--CCceEEEEe--ccCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 005096 140 LNKNRCSINRVLWTPTGRRL-ITGSQSGEFTLWNGQ--SFNFEMILQ--AHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQ 214 (715)
Q Consensus 140 l~~H~~~I~~l~~spdg~~L-atgs~dg~I~Iwd~~--~~~~~~~l~--~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd 214 (715)
...|.+.|++++|++++++| ++++.||.|+|||+. +++.+..+. .|...|++++|++++++|++++.+|.|++|+
T Consensus 98 ~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~ 177 (450)
T 2vdu_B 98 APPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSID 177 (450)
T ss_dssp --CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred CCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEe
Confidence 34688899999999999996 889999999999999 888888876 5678999999999999999999999999999
Q ss_pred CCCCceee----eecCCCCCeEEEEEecC---CCEEEEEECCCcEEEEECCCCeeEEE-ecccCCceEEEEEcCCCCEEE
Q 005096 215 NNMNNVKA----NKSAHKESVRDLSFCRT---DLKFCSCSDDTTVKVWDFARCQEERS-LTGHGWDVKSVDWHPTKSLLV 286 (715)
Q Consensus 215 ~~~~~~~~----~~~~h~~~I~~l~~spd---~~~Las~s~Dg~V~iwdl~~~~~~~~-l~~~~~~I~si~~spdg~~L~ 286 (715)
+.+..... .+..|...|.+++|+++ +++|++++.|++|++||+.+++.+.. +.+|...|.+++|+ ++++|+
T Consensus 178 ~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~ 256 (450)
T 2vdu_B 178 INSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLL 256 (450)
T ss_dssp TTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEE
T ss_pred cCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEE
Confidence 98876543 66789999999999999 99999999999999999998887777 55899999999999 999999
Q ss_pred EEeCCCcEEEEECCCCceeEEecc-------------------------CCCceEEEEEcCCCCEEEEEE-CCCeEEEEE
Q 005096 287 SGGKDSLVKLWDAKSGRELCSFHG-------------------------HKNMVLCVKWNQNGNWVLTAS-KDQIIKLYD 340 (715)
Q Consensus 287 sgs~Dg~I~iwDl~s~~~~~~~~~-------------------------~~~~I~sl~~spdg~~Lasgs-~dg~I~iwD 340 (715)
+++.|+.|+|||+++++.+..+.. ....|.+++|++++++|++++ .|+.|+|||
T Consensus 257 s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~ 336 (450)
T 2vdu_B 257 SAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILE 336 (450)
T ss_dssp EEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEE
T ss_pred EEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEE
Confidence 999999999999999998887752 235689999999999999999 899999999
Q ss_pred C--CCC---eEEEEeecCCCCeEEEEEccCCCCEEEEEeC------CCcEEEEEcCCCC
Q 005096 341 I--RAM---KELESFRGHRKDVTALAWHPFHEEYFVSGSL------DGSIFHWLVGHET 388 (715)
Q Consensus 341 l--~t~---~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~------DG~I~iwd~~~~~ 388 (715)
+ .++ +.+..+..+ ..|.+++|++ ++.++++++. +..|.+|.++...
T Consensus 337 ~~~~~~~~l~~~~~~~~~-~~v~~~~~~~-~~~~v~~~~~~~~~~~~~~i~v~~~~~~~ 393 (450)
T 2vdu_B 337 MSEKQKGDLALKQIITFP-YNVISLSAHN-DEFQVTLDNKESSGVQKNFAKFIEYNLNE 393 (450)
T ss_dssp ECSSSTTCEEEEEEEECS-SCEEEEEEET-TEEEEEECCTTCCSSCCCSEEEEEEETTT
T ss_pred eccCCCCceeeccEeccC-CceEEEEecC-CcEEEEEecccCCCCCCcceEEEEEEcCC
Confidence 9 555 777788877 8899999998 4433333332 4558888775443
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-29 Score=282.85 Aligned_cols=258 Identities=12% Similarity=0.119 Sum_probs=207.9
Q ss_pred ecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEe-ccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 005096 139 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQ-AHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNM 217 (715)
Q Consensus 139 ~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~-~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~ 217 (715)
.+++|...|.+++|+|+| .++.+.+|+.+. ...+. .|...|.+++|+|||++||+++.||.|+|||.+.
T Consensus 47 ~l~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~---~~~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~ 116 (588)
T 2j04_A 47 DINCNSKNLFHVKEFPLE-------FENKLDFELAQQ---NGLLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK 116 (588)
T ss_dssp CCSSBGGGTEEEEEECCC-------CCCTTTTSCCCS---SCSSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE
T ss_pred eecCCCccEEEEEECCCC-------CcceEEEEeCCC---ceEeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc
Confidence 347899999999999999 455555555432 22222 4578899999999999999999999999999654
Q ss_pred CceeeeecCCCC-----CeEEEEEecCCCEEEEEECCCcEEEEECCCCe-------eEEEe----cccCCceEEEEEcCC
Q 005096 218 NNVKANKSAHKE-----SVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQ-------EERSL----TGHGWDVKSVDWHPT 281 (715)
Q Consensus 218 ~~~~~~~~~h~~-----~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~-------~~~~l----~~~~~~I~si~~spd 281 (715)
+...+. |.. .|.+++|++|+++||+|+.||+|+|||+.++. .+.++ .+|...|.+++|+||
T Consensus 117 --~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPd 193 (588)
T 2j04_A 117 --MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYED 193 (588)
T ss_dssp --EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETT
T ss_pred --eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCC
Confidence 555555 554 59999999999999999999999999998875 35665 567789999999999
Q ss_pred CCEEEEEeCCCcEEEEECCCCce---eEEe-ccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCe
Q 005096 282 KSLLVSGGKDSLVKLWDAKSGRE---LCSF-HGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDV 357 (715)
Q Consensus 282 g~~L~sgs~Dg~I~iwDl~s~~~---~~~~-~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V 357 (715)
+ |++++.|+.|++||+.+++. ..++ ..|...|.+++|+ +++||+++ ++.|++||+.+++......+|...|
T Consensus 194 g--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V 268 (588)
T 2j04_A 194 V--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENF 268 (588)
T ss_dssp E--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCC
T ss_pred c--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceE
Confidence 9 88899999999999988773 3456 4788899999999 68899887 6999999999888755444799999
Q ss_pred EEEEE--ccCCCCEEEEEeCCCcEEEEEcCC-----CC-----------------ceEEEeeccCCCEEEEEEcCCCCEE
Q 005096 358 TALAW--HPFHEEYFVSGSLDGSIFHWLVGH-----ET-----------------PQVEIHNVHDNTVWDLAWHPIGYLL 413 (715)
Q Consensus 358 ~~l~~--sp~~~~~l~sgs~DG~I~iwd~~~-----~~-----------------~~~~~~~~h~~~V~~l~~spdg~~L 413 (715)
.+++| ++ ++..|+++++||+ ++|..+. .. ....... +...|++++|+|||++|
T Consensus 269 ~~va~~~s~-d~~~La~a~edG~-klw~~d~~~~spd~~l~a~~d~~v~lW~~~g~~l~~~~-~~~~I~~va~SPdG~~l 345 (588)
T 2j04_A 269 HIIPLNHEK-ESTILLMSNKTSY-KVLLEDELHVTADNIIAPYLEKKFKKWSTIWNEFNNYE-TTLVIHGISLSPDGYSI 345 (588)
T ss_dssp CEEEETTCS-SCEEEEECSSCEE-EEEESSSEEEECCCSSHHHHHHHHHHTTTTTTSSSSSC-CEEEEEEEEECTTSSEE
T ss_pred EEEEeeeCC-CCCEEEEEcCCCC-EEEeeccEEECCCceEEEEcCCEEEEEECCCCceeeec-cceEEEEEEECCCCCEE
Confidence 99999 98 7889999999999 9998742 00 0001111 23358999999999999
Q ss_pred EEEE
Q 005096 414 CSGS 417 (715)
Q Consensus 414 ~sgs 417 (715)
|+++
T Consensus 346 A~~~ 349 (588)
T 2j04_A 346 AIVY 349 (588)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9987
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-28 Score=266.17 Aligned_cols=250 Identities=10% Similarity=0.094 Sum_probs=193.8
Q ss_pred EEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEE-EEEEC
Q 005096 170 LWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKF-CSCSD 248 (715)
Q Consensus 170 Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~L-as~s~ 248 (715)
||++.+.+.+..+..|...|++++|++|+++|++|+.++ ++||+++..+....... ..+..+++..+++.+ ++++.
T Consensus 3 i~s~~~~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 79 (355)
T 3vu4_A 3 LGSMITRNPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEM--RHLSKVRMLHRTNYVAFVTGV 79 (355)
T ss_dssp ----------------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEEC--SCCCEEEECTTSSEEEEECSS
T ss_pred cccccccCCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeec--CCeEEEEEcCCCCEEEEEECC
Confidence 566677777777788999999999999999999998775 78999988766554432 257888888888877 45677
Q ss_pred CCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC-ceeEEeccCCCceEEEEEcCCCCEE
Q 005096 249 DTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSG-RELCSFHGHKNMVLCVKWNQNGNWV 327 (715)
Q Consensus 249 Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~-~~~~~~~~~~~~I~sl~~spdg~~L 327 (715)
|++|+|||+.+++.+..+. +...|.+++|+++ .++++ .|+.|+|||++++ +.+..+.. ....+++++ +++
T Consensus 80 d~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~--~~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~~l 150 (355)
T 3vu4_A 80 KEVVHIWDDVKKQDVSRIK-VDAPVKDLFLSRE--FIVVS-YGDVISVFKFGNPWKRITDDIR---FGGVCEFSN--GLL 150 (355)
T ss_dssp TTEEEEEETTTTEEEEEEE-CSSCEEEEEECSS--EEEEE-ETTEEEEEESSTTCCBSSCCEE---EEEEEEEET--TEE
T ss_pred ccEEEEEECCCCcEEEEEE-CCCceEEEEEcCC--EEEEE-EcCEEEEEECCCCceeeEEecc---CCceEEEEc--cEE
Confidence 8999999999999988887 6678999999865 34444 4789999999988 66666654 344555665 667
Q ss_pred EE--EECCCeEEEEECCCCe----------------EEEEeecCCCCeEEEEEccCCCCEEEEEeCCCc-EEEEEcCCCC
Q 005096 328 LT--ASKDQIIKLYDIRAMK----------------ELESFRGHRKDVTALAWHPFHEEYFVSGSLDGS-IFHWLVGHET 388 (715)
Q Consensus 328 as--gs~dg~I~iwDl~t~~----------------~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~-I~iwd~~~~~ 388 (715)
++ ++.||.|+|||+++++ .+..+.+|...|++++|++ ++.+|++++.|++ |+|||+++..
T Consensus 151 a~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~-~g~~l~s~s~d~~~v~iwd~~~~~ 229 (355)
T 3vu4_A 151 VYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNR-KSDMVATCSQDGTIIRVFKTEDGV 229 (355)
T ss_dssp EEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECT-TSSEEEEEETTCSEEEEEETTTCC
T ss_pred EEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECC-CCCEEEEEeCCCCEEEEEECCCCc
Confidence 76 5789999999999865 2778899999999999999 8999999999998 9999999888
Q ss_pred ceEEEeec-cCCCEEEEEEcCCCCEEEEEECCCeEEEEecCCCCC
Q 005096 389 PQVEIHNV-HDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGD 432 (715)
Q Consensus 389 ~~~~~~~~-h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~~ 432 (715)
.+..+..+ |...|++++|++++++|++++.|++|+|||++....
T Consensus 230 ~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~ 274 (355)
T 3vu4_A 230 LVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQD 274 (355)
T ss_dssp EEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSC
T ss_pred EEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCC
Confidence 77666645 899999999999999999999999999999976543
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-29 Score=276.97 Aligned_cols=243 Identities=9% Similarity=0.055 Sum_probs=180.2
Q ss_pred cCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEE-----EEeccCCCEEEEEEcC--------CCCEEEEEeC
Q 005096 140 LNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEM-----ILQAHDHAIRSMVWSH--------NDNWMVSGDD 206 (715)
Q Consensus 140 l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~-----~l~~h~~~V~~l~~sp--------dg~~L~tgs~ 206 (715)
...|...+....+++++++|++++.|++|+|||+++++... .+.+|.+.|++|+|++ |+++|++++.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~ 164 (393)
T 4gq1_A 85 ENLHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGD 164 (393)
T ss_dssp CC----------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEET
T ss_pred ccccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEEC
Confidence 34566666677777788899999999999999998876543 3568999999999997 7899999999
Q ss_pred CCcEEEEeCCCCceeeeecCCCCCeEEEEEecCC-CEEEEEECCCcEEEEECCCCeeEEE--------------------
Q 005096 207 GGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTD-LKFCSCSDDTTVKVWDFARCQEERS-------------------- 265 (715)
Q Consensus 207 dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~-~~Las~s~Dg~V~iwdl~~~~~~~~-------------------- 265 (715)
|++|+|||+.++.....+..|...|.+++|+|++ .+|++++.|++|++||+++++....
T Consensus 165 D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~ 244 (393)
T 4gq1_A 165 DCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPL 244 (393)
T ss_dssp TSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGG
T ss_pred CCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccc
Confidence 9999999999888888888899999999999987 4799999999999999987654322
Q ss_pred -----ecccCCceEEEEEc-CCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCceEEEE------------------Ec
Q 005096 266 -----LTGHGWDVKSVDWH-PTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVK------------------WN 321 (715)
Q Consensus 266 -----l~~~~~~I~si~~s-pdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~------------------~s 321 (715)
..+|...|.++.|+ +|++.|++++.|+.|++||+.+++....+..+...+..+. |+
T Consensus 245 ~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (393)
T 4gq1_A 245 VNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPH 324 (393)
T ss_dssp C------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEEC
T ss_pred eeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEc
Confidence 13566778899986 7999999999999999999998776666554444443333 32
Q ss_pred C--CCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEc
Q 005096 322 Q--NGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLV 384 (715)
Q Consensus 322 p--dg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~ 384 (715)
+ ++.++++|+.||.|+|||+.+++.+..+..|...|.+++|+| ++++||+++.+| |.+|.+
T Consensus 325 ~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafsp-dG~~LA~as~~G-v~lvrL 387 (393)
T 4gq1_A 325 PRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQ-DGSHLAIATEGS-VLLTRL 387 (393)
T ss_dssp SSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECT-TSSEEEEEESSE-EEEEEE
T ss_pred cCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcC-CCCEEEEEeCCC-eEEEEE
Confidence 2 334667788999999999999999988889999999999999 899999999776 445543
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.96 E-value=4.4e-28 Score=255.31 Aligned_cols=273 Identities=13% Similarity=0.126 Sum_probs=197.0
Q ss_pred EEEEEEcCCCC---EEEEEeCCCeEEEEeCCCC---ceEEEEeccCCCEEEEEEcCCCC-EEEEEeCCCcE-EEEeC--C
Q 005096 147 INRVLWTPTGR---RLITGSQSGEFTLWNGQSF---NFEMILQAHDHAIRSMVWSHNDN-WMVSGDDGGAI-KYWQN--N 216 (715)
Q Consensus 147 I~~l~~spdg~---~Latgs~dg~I~Iwd~~~~---~~~~~l~~h~~~V~~l~~spdg~-~L~tgs~dg~I-~iwd~--~ 216 (715)
+.++-|-..+- .|+++++. .|++|+..+. +++.++..|+..|..|.+.+|.. ++.++-.+=.+ .|+.+ .
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~-~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~s 120 (356)
T 2w18_A 42 VSAMFWERAGCKEPCIITACED-VVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCS 120 (356)
T ss_dssp EEEEEEC----CEEEEEEEESS-EEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC-
T ss_pred EeeeeeccCCCCccEEEEeccc-eEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEEC
Confidence 55666655443 56677765 6999998887 89999999999999999999753 33332221111 12211 1
Q ss_pred CC----ceeeeecCCCCCeEEEEEecCCCEEEEEE--CCCcEEEEEC-CCCeeEEEecccCCceEEEEEcC---CCCEEE
Q 005096 217 MN----NVKANKSAHKESVRDLSFCRTDLKFCSCS--DDTTVKVWDF-ARCQEERSLTGHGWDVKSVDWHP---TKSLLV 286 (715)
Q Consensus 217 ~~----~~~~~~~~h~~~I~~l~~spd~~~Las~s--~Dg~V~iwdl-~~~~~~~~l~~~~~~I~si~~sp---dg~~L~ 286 (715)
.. .......++...|..+ ++++.+.++. .|+.|++|++ .+++.+..+..|...++.++|++ ++.+|+
T Consensus 121 pd~~~~~~~l~s~g~~~~v~~l---~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~La 197 (356)
T 2w18_A 121 SDDESEKQVLLKSGNIKAVLGL---TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALL 197 (356)
T ss_dssp -----CCEEEEEEEEEEEEEEE---TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEE
T ss_pred CCccccccEEEeCCCeEEEEec---CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEE
Confidence 11 1111112333334433 3555444433 4999999999 55888888889999999999999 779999
Q ss_pred EEeCCCcEEEEECCCCceeEEeccCC---CceEEEEEcCCCCEE------------EEEECCCeEEEEECCCCeEEEEe-
Q 005096 287 SGGKDSLVKLWDAKSGRELCSFHGHK---NMVLCVKWNQNGNWV------------LTASKDQIIKLYDIRAMKELESF- 350 (715)
Q Consensus 287 sgs~Dg~I~iwDl~s~~~~~~~~~~~---~~I~sl~~spdg~~L------------asgs~dg~I~iwDl~t~~~~~~~- 350 (715)
+++.|++|+|||+++++++.++.+|. ..+.+++|+++++++ ++|+.|++|++||.++++.+..+
T Consensus 198 SgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~ 277 (356)
T 2w18_A 198 GTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVML 277 (356)
T ss_dssp EEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEE
T ss_pred EecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEE
Confidence 99999999999999999999997643 367888999999876 56778999999999999988765
Q ss_pred ----ecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEE-EEEEcCCCCEEEEEECCCeEEEE
Q 005096 351 ----RGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVW-DLAWHPIGYLLCSGSNDHTTKFW 425 (715)
Q Consensus 351 ----~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~-~l~~spdg~~L~sgs~Dg~I~iW 425 (715)
.+|...+.+..+ ++.++++++.|++|+|||+.+++.+..+ .+|...+. +++|+|||++|++|+.|++|+||
T Consensus 278 ~~~p~Gh~~~~lsg~~---sg~~lASgS~DgTIkIWDl~tGk~l~tL-~gH~~~vvs~vafSPDG~~LaSGS~D~TIklW 353 (356)
T 2w18_A 278 YCLPPGQAGRFLEGDV---KDHCAAAILTSGTIAIWDLLLGQCTALL-PPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVY 353 (356)
T ss_dssp ECCCTTCCCCEEEEEE---ETTEEEEEETTSCEEEEETTTCSEEEEE-CCC--CCCCEEEECSSSSEEEEECTTSCEEEE
T ss_pred eeccCCCcceeEcccc---CCCEEEEEcCCCcEEEEECCCCcEEEEe-cCCCCCeEEEEEECCCCCEEEEEECCCcEEEe
Confidence 355555554444 3778999999999999999988766554 45766554 68999999999999999999999
Q ss_pred ec
Q 005096 426 CR 427 (715)
Q Consensus 426 dl 427 (715)
|+
T Consensus 354 d~ 355 (356)
T 2w18_A 354 HY 355 (356)
T ss_dssp EE
T ss_pred cC
Confidence 86
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=6.7e-29 Score=265.95 Aligned_cols=232 Identities=7% Similarity=0.052 Sum_probs=191.2
Q ss_pred EcCCCCEEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECC---------CCeeEE
Q 005096 194 WSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFA---------RCQEER 264 (715)
Q Consensus 194 ~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~---------~~~~~~ 264 (715)
+..++++|++|+.||.|++||+++++.+..+. ...|.++.|+++ +++++.|++|++|+.. +.+.+.
T Consensus 44 ~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~ 118 (343)
T 3lrv_A 44 MYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLR 118 (343)
T ss_dssp SSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEE
T ss_pred hcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeE
Confidence 44577899999999999999999988777665 567778888877 9999999999999765 444344
Q ss_pred Eec-ccCCceEEEEEcC--CCCEEEEEeCCCcEEEEECCCCceeEEec-cCCCceEEEEEcCCCCEEEEEECCCeEEEEE
Q 005096 265 SLT-GHGWDVKSVDWHP--TKSLLVSGGKDSLVKLWDAKSGRELCSFH-GHKNMVLCVKWNQNGNWVLTASKDQIIKLYD 340 (715)
Q Consensus 265 ~l~-~~~~~I~si~~sp--dg~~L~sgs~Dg~I~iwDl~s~~~~~~~~-~~~~~I~sl~~spdg~~Lasgs~dg~I~iwD 340 (715)
.+. .|...|.+++|++ ++++|++++.|+.|++||+++++.+..+. .+...|++++|++++++|++|+.|+.|+|||
T Consensus 119 ~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd 198 (343)
T 3lrv_A 119 EIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYN 198 (343)
T ss_dssp EEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEE
T ss_pred EeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEE
Confidence 433 5667899999999 99999999999999999999998877664 3455799999999999999999999999999
Q ss_pred CCCCeEE-EEeec-CCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEe--eccCCCE--EEEEEcCCCCEEE
Q 005096 341 IRAMKEL-ESFRG-HRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIH--NVHDNTV--WDLAWHPIGYLLC 414 (715)
Q Consensus 341 l~t~~~~-~~~~~-h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~--~~h~~~V--~~l~~spdg~~L~ 414 (715)
+++++.+ ..+.. |...|++++|++ ++.+|++++ |+.|++||+++......+. ..|...+ .+++|++++++|+
T Consensus 199 ~~~~~~~~~~~~~~h~~~v~~l~fs~-~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~ 276 (343)
T 3lrv_A 199 LSSPDQASSRFPVDEEAKIKEVKFAD-NGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMI 276 (343)
T ss_dssp SSCTTSCCEECCCCTTSCEEEEEECT-TSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEE
T ss_pred CCCCCCCccEEeccCCCCEEEEEEeC-CCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEE
Confidence 9999988 88888 999999999999 889999999 4599999998876543221 1122333 4699999999999
Q ss_pred EEEC-CCeEEEEecCCCCC
Q 005096 415 SGSN-DHTTKFWCRNRPGD 432 (715)
Q Consensus 415 sgs~-Dg~I~iWdl~~~~~ 432 (715)
+++. |+.|+||+++...+
T Consensus 277 ~~s~~d~~i~v~~~~~~~~ 295 (343)
T 3lrv_A 277 AYSNESNSLTIYKFDKKTK 295 (343)
T ss_dssp EEETTTTEEEEEEECTTTC
T ss_pred EecCCCCcEEEEEEccccc
Confidence 9998 99999999976544
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.9e-27 Score=259.21 Aligned_cols=282 Identities=11% Similarity=0.073 Sum_probs=228.2
Q ss_pred CCccEEEEE---EcCCCCEEEEEeC--------------CC--eEEEEeCCCC--ceEEEEeccCCCEEEEEEcCCCCEE
Q 005096 143 NRCSINRVL---WTPTGRRLITGSQ--------------SG--EFTLWNGQSF--NFEMILQAHDHAIRSMVWSHNDNWM 201 (715)
Q Consensus 143 H~~~I~~l~---~spdg~~Latgs~--------------dg--~I~Iwd~~~~--~~~~~l~~h~~~V~~l~~spdg~~L 201 (715)
....+..++ |+++++.+++.+. ++ .|.+||.+++ +.+..+..+ ..+.+++|++++.++
T Consensus 59 ~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~ 137 (433)
T 3bws_A 59 KNIALVEMAIPVYKDEKEIELKLSSPGFQNSSYRIRKPEELNEKLIALDKEGITHRFISRFKTG-FQPKSVRFIDNTRLA 137 (433)
T ss_dssp TTEEEEEEEEECCCTTCCEEEEEECTTBCCEEEEESSGGGGTTCEEECCBTTCSEEEEEEEECS-SCBCCCEESSSSEEE
T ss_pred cCCccEEEEEeeccCCCcEEEEEEccccCcceeeecccCCCceEEEEECCCCCcceEEEEEcCC-CCceEEEEeCCCeEE
Confidence 345567777 7777776665432 23 4444555434 455555544 446699999977778
Q ss_pred EEEeCCCcEEEEeCCCCceee-----eecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEE
Q 005096 202 VSGDDGGAIKYWQNNMNNVKA-----NKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSV 276 (715)
Q Consensus 202 ~tgs~dg~I~iwd~~~~~~~~-----~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si 276 (715)
++++.++.|++||+.+++... .+..|...|.+++|+++++++++++.|+.|++||+++++.+..+..+...+.++
T Consensus 138 ~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~ 217 (433)
T 3bws_A 138 IPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKIL 217 (433)
T ss_dssp EEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEE
T ss_pred EEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEE
Confidence 888889999999999988776 445788899999999999999999999999999999999999888889999999
Q ss_pred EEcCCCCEEEEEe-CCCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEE--------CCCeEEEEECCCCeEE
Q 005096 277 DWHPTKSLLVSGG-KDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTAS--------KDQIIKLYDIRAMKEL 347 (715)
Q Consensus 277 ~~spdg~~L~sgs-~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs--------~dg~I~iwDl~t~~~~ 347 (715)
+|++++++|++++ .|+.|++||+++++.+..+.. ...+.+++|++++++|++++ .|+.|++||+++++.+
T Consensus 218 ~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~ 296 (433)
T 3bws_A 218 LYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDK-IGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLI 296 (433)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTTTEEEEECCC-CSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEE
T ss_pred EEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecC-CCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEE
Confidence 9999999885554 799999999999988887774 45699999999999999888 4889999999999887
Q ss_pred EEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEEC---------
Q 005096 348 ESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSN--------- 418 (715)
Q Consensus 348 ~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~--------- 418 (715)
..+. +...+.+++|++++..++++++.|+.|++||+++.+....+ .+...+.+++|++++++|++++.
T Consensus 297 ~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~--~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~ 373 (433)
T 3bws_A 297 DTIG-PPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSI--PVFDKPNTIALSPDGKYLYVSCRGPNHPTEGY 373 (433)
T ss_dssp EEEE-EEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEE--ECSSSEEEEEECTTSSEEEEEECCCCCTTTCT
T ss_pred eecc-CCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEe--cCCCCCCeEEEcCCCCEEEEEecCCCcccccc
Confidence 7663 45588999999954457788899999999999876654433 26778999999999998888887
Q ss_pred ------CCeEEEEecCC
Q 005096 419 ------DHTTKFWCRNR 429 (715)
Q Consensus 419 ------Dg~I~iWdl~~ 429 (715)
||.|++||+..
T Consensus 374 ~~~g~~dg~v~~~d~~~ 390 (433)
T 3bws_A 374 LKKGLVLGKVYVIDTTT 390 (433)
T ss_dssp TSCCSSCCEEEEEETTT
T ss_pred ccccccceEEEEEECCC
Confidence 57999999865
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-26 Score=244.75 Aligned_cols=217 Identities=11% Similarity=0.093 Sum_probs=167.3
Q ss_pred CCCCccEEEEEEcCC----CCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEe--CCCcEEEEe
Q 005096 141 NKNRCSINRVLWTPT----GRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGD--DGGAIKYWQ 214 (715)
Q Consensus 141 ~~H~~~I~~l~~spd----g~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs--~dg~I~iwd 214 (715)
+-|...|++|+|++| +.++++++.+ ++||++. +++++.++. .|+.|++|+
T Consensus 108 ~~~~~~v~sla~spd~~~~~~~l~s~g~~--~~v~~l~----------------------~g~lv~ss~~g~d~~V~~~~ 163 (356)
T 2w18_A 108 NLEIREIRALFCSSDDESEKQVLLKSGNI--KAVLGLT----------------------KRRLVSSSGTLSDQQVEVMT 163 (356)
T ss_dssp SSSEEEEEEECC------CCEEEEEEEEE--EEEEEET----------------------TTEEEEEESSSTTCEEEEEE
T ss_pred cccccceEEEEECCCccccccEEEeCCCe--EEEEecC----------------------CCcEEEecccCCCCcEEEEE
Confidence 345566777777777 6777776633 5666432 344444433 477888888
Q ss_pred C-CCCceeeeecCCCCCeEEEEEec---CCCEEEEEECCCcEEEEECCCCeeEEEecccC---CceEEEEEcCCCCEE--
Q 005096 215 N-NMNNVKANKSAHKESVRDLSFCR---TDLKFCSCSDDTTVKVWDFARCQEERSLTGHG---WDVKSVDWHPTKSLL-- 285 (715)
Q Consensus 215 ~-~~~~~~~~~~~h~~~I~~l~~sp---d~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~---~~I~si~~spdg~~L-- 285 (715)
+ .+++.+..+..|...++.++|++ ++.+|++++.|++|+|||+++++.++++.+|. ..+.+++|+|+++++
T Consensus 164 ~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs 243 (356)
T 2w18_A 164 FAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIV 243 (356)
T ss_dssp ECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEE
T ss_pred ECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEE
Confidence 7 34666677778899999999999 77999999999999999999999999998654 367788999999876
Q ss_pred ----------EEEeCCCcEEEEECCCCceeEEe-----ccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEe
Q 005096 286 ----------VSGGKDSLVKLWDAKSGRELCSF-----HGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESF 350 (715)
Q Consensus 286 ----------~sgs~Dg~I~iwDl~s~~~~~~~-----~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~ 350 (715)
++|+.|++|++||.++++.+..+ .+|...+.+..++ +.++++++.|++|+|||+++++++.++
T Consensus 244 ~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk~l~tL 321 (356)
T 2w18_A 244 LSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLGQCTALL 321 (356)
T ss_dssp EC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTCSEEEEE
T ss_pred eccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCCcEEEEe
Confidence 56788999999999999887665 3565555555554 889999999999999999999999999
Q ss_pred ecCCCCeE-EEEEccCCCCEEEEEeCCCcEEEEEc
Q 005096 351 RGHRKDVT-ALAWHPFHEEYFVSGSLDGSIFHWLV 384 (715)
Q Consensus 351 ~~h~~~V~-~l~~sp~~~~~l~sgs~DG~I~iwd~ 384 (715)
.+|...+. +++|+| ++++|++|+.|++|+|||+
T Consensus 322 ~gH~~~vvs~vafSP-DG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 322 PPVSDQHWSFVKWSG-TDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp CCC--CCCCEEEECS-SSSEEEEECTTSCEEEEEE
T ss_pred cCCCCCeEEEEEECC-CCCEEEEEECCCcEEEecC
Confidence 99887655 689999 8999999999999999996
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=8.9e-26 Score=257.54 Aligned_cols=281 Identities=11% Similarity=0.098 Sum_probs=228.4
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEeC--CCCceEEEEeccCCCEEEEEEcC----CCCEEEEEeC-CCcEEEEeCCCCc
Q 005096 147 INRVLWTPTGRRLITGSQSGEFTLWNG--QSFNFEMILQAHDHAIRSMVWSH----NDNWMVSGDD-GGAIKYWQNNMNN 219 (715)
Q Consensus 147 I~~l~~spdg~~Latgs~dg~I~Iwd~--~~~~~~~~l~~h~~~V~~l~~sp----dg~~L~tgs~-dg~I~iwd~~~~~ 219 (715)
+.+++|++||++|++++.|++|++||+ .+++.+..+. +...+..++|++ |+++|++++. +++|.|||..+.+
T Consensus 181 ~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~ 259 (543)
T 1nir_A 181 VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLE 259 (543)
T ss_dssp EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCC
T ss_pred cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccc
Confidence 889999999999999999999999999 8888888887 456689999999 9999988874 8999999999998
Q ss_pred eeeeecCC-----------CCCeEEEEEecCCCE-EEEEECCCcEEEEECCCCeeEE--EecccCCceEEEEEcCCCCEE
Q 005096 220 VKANKSAH-----------KESVRDLSFCRTDLK-FCSCSDDTTVKVWDFARCQEER--SLTGHGWDVKSVDWHPTKSLL 285 (715)
Q Consensus 220 ~~~~~~~h-----------~~~I~~l~~spd~~~-Las~s~Dg~V~iwdl~~~~~~~--~l~~~~~~I~si~~spdg~~L 285 (715)
++..+..+ ...+.++.+++++.. +++...++.|.+||+.+.+.+. .+. +...+.+++|++++++|
T Consensus 260 ~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~-~~~~~~~~~~spdg~~l 338 (543)
T 1nir_A 260 PKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG-AAPFLHDGGWDSSHRYF 338 (543)
T ss_dssp EEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEE-CCSSCCCEEECTTSCEE
T ss_pred cceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEec-cCcCccCceECCCCCEE
Confidence 87776542 237899999997765 5566678999999998765433 333 56678899999999977
Q ss_pred EEEe-CCCcEEEEECCCCceeEEecc----CCCceEEEEEcCC-CCEEEEEE-CCCeEEEEECCC-------CeEEEEee
Q 005096 286 VSGG-KDSLVKLWDAKSGRELCSFHG----HKNMVLCVKWNQN-GNWVLTAS-KDQIIKLYDIRA-------MKELESFR 351 (715)
Q Consensus 286 ~sgs-~Dg~I~iwDl~s~~~~~~~~~----~~~~I~sl~~spd-g~~Lasgs-~dg~I~iwDl~t-------~~~~~~~~ 351 (715)
++++ .+++|.+||+++++++..+.. |......+ ++++ +.+++++. .|++|.|||+.+ ++++.++.
T Consensus 339 ~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~ 417 (543)
T 1nir_A 339 MTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQ 417 (543)
T ss_dssp EEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEE
T ss_pred EEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEE
Confidence 6655 588999999999998887764 44334343 4676 55566665 579999999998 89999999
Q ss_pred cCCCCeEEEEEccCCCCEEEEEe-------CCCcEEEEEcCCCCceEEEe--------eccCCCEEEEEEcCCCCEEEEE
Q 005096 352 GHRKDVTALAWHPFHEEYFVSGS-------LDGSIFHWLVGHETPQVEIH--------NVHDNTVWDLAWHPIGYLLCSG 416 (715)
Q Consensus 352 ~h~~~V~~l~~sp~~~~~l~sgs-------~DG~I~iwd~~~~~~~~~~~--------~~h~~~V~~l~~spdg~~L~sg 416 (715)
.+...+..|+++| ++++|++++ .+++|.|||+.+.+...+.+ ..+...+..++|+++|+.|+++
T Consensus 418 ~~g~~~~~v~~~p-dg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s 496 (543)
T 1nir_A 418 GQGGGSLFIKTHP-KSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFS 496 (543)
T ss_dssp CSCSCCCCEECCT-TCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEE
T ss_pred cCCCCceEEEcCC-CCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEE
Confidence 9999999999999 788888876 26799999999888764443 2356789999999999988876
Q ss_pred E-----CCCeEEEEecCCCC
Q 005096 417 S-----NDHTTKFWCRNRPG 431 (715)
Q Consensus 417 s-----~Dg~I~iWdl~~~~ 431 (715)
. .|+.|.|||.++.+
T Consensus 497 ~~~~~~~~~~i~v~D~~t~~ 516 (543)
T 1nir_A 497 VWNGKNDSSALVVVDDKTLK 516 (543)
T ss_dssp EECCTTSCCEEEEEETTTTE
T ss_pred eecCCCCCCeEEEEECCCce
Confidence 3 37999999986643
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.7e-26 Score=268.97 Aligned_cols=284 Identities=9% Similarity=0.045 Sum_probs=227.4
Q ss_pred CccEEEEEEcCCCCEEEEEeC-CC-----eEEEEeCCCCceEEEEeccCCC------------------------EEEEE
Q 005096 144 RCSINRVLWTPTGRRLITGSQ-SG-----EFTLWNGQSFNFEMILQAHDHA------------------------IRSMV 193 (715)
Q Consensus 144 ~~~I~~l~~spdg~~Latgs~-dg-----~I~Iwd~~~~~~~~~l~~h~~~------------------------V~~l~ 193 (715)
...|++++||+||++|++++. |+ .|++||+.+++....+..+... |.+++
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ 115 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence 456899999999999999998 88 8999999999888777665433 78999
Q ss_pred EcCCCCEEEEEeCCCcEEEEeCCCCc--eeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCC
Q 005096 194 WSHNDNWMVSGDDGGAIKYWQNNMNN--VKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGW 271 (715)
Q Consensus 194 ~spdg~~L~tgs~dg~I~iwd~~~~~--~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~ 271 (715)
|++|+++|++++. +.|++||+.++. ....+..+...+.+++|++|+++|++++. +.|++||+.+++.......+..
T Consensus 116 ~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~-~~i~~~d~~~g~~~~~~~~~~~ 193 (741)
T 2ecf_A 116 WSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRG-RNLWVIDLASGRQMQLTADGST 193 (741)
T ss_dssp ECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEET-TEEEEEETTTTEEEECCCCCCS
T ss_pred ECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeC-CcEEEEecCCCCEEEeccCCcc
Confidence 9999999998886 999999999873 34456677788999999999999999885 5899999998876655443333
Q ss_pred c----------------eEEEEEcCCCCEEEEEeCCC---------------------------------cEEEEECCC-
Q 005096 272 D----------------VKSVDWHPTKSLLVSGGKDS---------------------------------LVKLWDAKS- 301 (715)
Q Consensus 272 ~----------------I~si~~spdg~~L~sgs~Dg---------------------------------~I~iwDl~s- 301 (715)
. +.+++|+|||++|++++.|+ .|++||+++
T Consensus 194 ~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~ 273 (741)
T 2ecf_A 194 TIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQ 273 (741)
T ss_dssp SEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTT
T ss_pred ceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCC
Confidence 2 47899999999999987765 789999998
Q ss_pred CceeEEec--cCCCceEEEEEcCCCCEEEEEEC-----CCeEEEEECCCCeEEEEeecCCC----CeEEEEEccCCCCEE
Q 005096 302 GRELCSFH--GHKNMVLCVKWNQNGNWVLTASK-----DQIIKLYDIRAMKELESFRGHRK----DVTALAWHPFHEEYF 370 (715)
Q Consensus 302 ~~~~~~~~--~~~~~I~sl~~spdg~~Lasgs~-----dg~I~iwDl~t~~~~~~~~~h~~----~V~~l~~sp~~~~~l 370 (715)
++...... .+...+.+++| +||++|++++. +..|++||+.+++....+..+.. .+.+++|++ +++++
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~sp-dg~~~ 351 (741)
T 2ecf_A 274 AQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLD-DGSIL 351 (741)
T ss_dssp CCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECT-TSCEE
T ss_pred CceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECC-CCeEE
Confidence 77655443 36778999999 99999997764 56899999999988777765543 456899999 56699
Q ss_pred EEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEE-EEcCCCCEEEEE-ECCC--eEEEEecCCCCC
Q 005096 371 VSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDL-AWHPIGYLLCSG-SNDH--TTKFWCRNRPGD 432 (715)
Q Consensus 371 ~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l-~~spdg~~L~sg-s~Dg--~I~iWdl~~~~~ 432 (715)
++++.||.+.||.++.... ...+..+...|.++ .|++|++.|+.. +.|+ .++||+++..+.
T Consensus 352 ~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~ 416 (741)
T 2ecf_A 352 WSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGG 416 (741)
T ss_dssp EEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCC
T ss_pred EEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCC
Confidence 9999999888888764444 55566677788887 599999877554 4455 899999876443
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.95 E-value=6.1e-26 Score=250.27 Aligned_cols=247 Identities=14% Similarity=0.094 Sum_probs=199.4
Q ss_pred CCEEEEEeCC------CeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCC---cEEEEeCCCCceeeeecC
Q 005096 156 GRRLITGSQS------GEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGG---AIKYWQNNMNNVKANKSA 226 (715)
Q Consensus 156 g~~Latgs~d------g~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg---~I~iwd~~~~~~~~~~~~ 226 (715)
+..|++++.+ ++|++||++. .....+..|...|.+++|++|+++|++++.++ .|++||+.+++.. .+..
T Consensus 143 ~~~l~~~s~~~~~~~~~~i~i~d~~g-~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~ 220 (415)
T 2hqs_A 143 RTRIAYVVQTNGGQFPYELRVSDYDG-YNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVAS 220 (415)
T ss_dssp TCEEEEEEECSSSSCCEEEEEEETTS-CSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEEC
T ss_pred CCEEEEEEecCCCCccceEEEEcCCC-CCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-Eeec
Confidence 5566666554 7999999975 45677788999999999999999999998875 9999999988765 4566
Q ss_pred CCCCeEEEEEecCCCEEE-EEECCCc--EEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeC-CC--cEEEEECC
Q 005096 227 HKESVRDLSFCRTDLKFC-SCSDDTT--VKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGK-DS--LVKLWDAK 300 (715)
Q Consensus 227 h~~~I~~l~~spd~~~La-s~s~Dg~--V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~-Dg--~I~iwDl~ 300 (715)
+...+.+++|++|+++|+ +++.|+. |++||+++++. ..+..+...+.+++|+||+++|++++. ++ .|++||++
T Consensus 221 ~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~ 299 (415)
T 2hqs_A 221 FPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNIN 299 (415)
T ss_dssp CSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETT
T ss_pred CCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECC
Confidence 788999999999999888 5665554 99999988765 566778888999999999999888876 44 68888998
Q ss_pred CCceeEEeccCCCceEEEEEcCCCCEEEEEECC---CeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCC
Q 005096 301 SGRELCSFHGHKNMVLCVKWNQNGNWVLTASKD---QIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDG 377 (715)
Q Consensus 301 s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~d---g~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG 377 (715)
+++. ..+..+...+.+++|++||++|++++.+ ..|++||+.+++.. .+..+. .+.+++|+| ++++|++++.++
T Consensus 300 ~~~~-~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~-~~~~~~~sp-dg~~l~~~s~~~ 375 (415)
T 2hqs_A 300 GGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTF-LDETPSLAP-NGTMVIYSSSQG 375 (415)
T ss_dssp SSCC-EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCSS-SCEEEEECT-TSSEEEEEEEET
T ss_pred CCCE-EEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-EecCCC-CcCCeEEcC-CCCEEEEEEcCC
Confidence 7764 4455567789999999999999988764 58999999988764 455454 899999999 778777777666
Q ss_pred ---cEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCC
Q 005096 378 ---SIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGY 411 (715)
Q Consensus 378 ---~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~ 411 (715)
.|++||+... ....+..|.+.|.+++|+|...
T Consensus 376 ~~~~l~~~d~~g~--~~~~l~~~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 376 MGSVLNLVSTDGR--FKARLPATDGQVKFPAWSPYLH 410 (415)
T ss_dssp TEEEEEEEETTSC--CEEECCCSSSEEEEEEECCCCC
T ss_pred CccEEEEEECCCC--cEEEeeCCCCCCcCCccccccc
Confidence 7999998643 3355667889999999998753
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.95 E-value=3.1e-26 Score=252.69 Aligned_cols=277 Identities=9% Similarity=0.044 Sum_probs=219.0
Q ss_pred CccEEEEEEcCCCC-EEEEEe----CCC----eEEEEeC--CCCceE--EEEeccCCCEEEEEEcC--------------
Q 005096 144 RCSINRVLWTPTGR-RLITGS----QSG----EFTLWNG--QSFNFE--MILQAHDHAIRSMVWSH-------------- 196 (715)
Q Consensus 144 ~~~I~~l~~spdg~-~Latgs----~dg----~I~Iwd~--~~~~~~--~~l~~h~~~V~~l~~sp-------------- 196 (715)
...|+..+|+..|. +|++|+ .|| +|+|||+ .+++.+ ..+.+|...+..++++.
T Consensus 62 ~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~ 141 (415)
T 2hqs_A 62 AQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGA 141 (415)
T ss_dssp GGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCC
T ss_pred ccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCc
Confidence 35677888888775 555775 467 8999999 888876 55888888887777664
Q ss_pred CCCEEEEEeCC------CcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCC---cEEEEECCCCeeEEEec
Q 005096 197 NDNWMVSGDDG------GAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDT---TVKVWDFARCQEERSLT 267 (715)
Q Consensus 197 dg~~L~tgs~d------g~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg---~V~iwdl~~~~~~~~l~ 267 (715)
.+..|+.++.+ +.|++||++.. ....+..|...|.+++|++|+++|++++.++ .|++||+++++.. .+.
T Consensus 142 ~~~~l~~~s~~~~~~~~~~i~i~d~~g~-~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~ 219 (415)
T 2hqs_A 142 FRTRIAYVVQTNGGQFPYELRVSDYDGY-NQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVA 219 (415)
T ss_dssp TTCEEEEEEECSSSSCCEEEEEEETTSC-SCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEE
T ss_pred CCCEEEEEEecCCCCccceEEEEcCCCC-CCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-Eee
Confidence 15566655543 79999999854 4556667889999999999999999999885 9999999988765 456
Q ss_pred ccCCceEEEEEcCCCCEEE-EEeCCCc--EEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECC-C--eEEEEEC
Q 005096 268 GHGWDVKSVDWHPTKSLLV-SGGKDSL--VKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKD-Q--IIKLYDI 341 (715)
Q Consensus 268 ~~~~~I~si~~spdg~~L~-sgs~Dg~--I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~d-g--~I~iwDl 341 (715)
.+...+.+++|+||+++|+ +++.|+. |++||+++++. ..+..+...+.+++|++|+++|++++.+ + .|++||+
T Consensus 220 ~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~ 298 (415)
T 2hqs_A 220 SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNI 298 (415)
T ss_dssp CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEET
T ss_pred cCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEEC
Confidence 6778899999999999887 5665554 99999998765 5667788899999999999999988864 4 6888899
Q ss_pred CCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCC---CcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEEC
Q 005096 342 RAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLD---GSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSN 418 (715)
Q Consensus 342 ~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~D---G~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~ 418 (715)
.+++. ..+..+...+.+++|++ ++++|++++.+ ..|++||+.++.. ..+..+. .+.+++|++||++|++++.
T Consensus 299 ~~~~~-~~l~~~~~~~~~~~~sp-dG~~l~~~~~~~g~~~i~~~d~~~~~~--~~l~~~~-~~~~~~~spdg~~l~~~s~ 373 (415)
T 2hqs_A 299 NGGAP-QRITWEGSQNQDADVSS-DGKFMVMVSSNGGQQHIAKQDLATGGV--QVLSSTF-LDETPSLAPNGTMVIYSSS 373 (415)
T ss_dssp TSSCC-EECCCSSSEEEEEEECT-TSSEEEEEEECSSCEEEEEEETTTCCE--EECCCSS-SCEEEEECTTSSEEEEEEE
T ss_pred CCCCE-EEEecCCCcccCeEECC-CCCEEEEEECcCCceEEEEEECCCCCE--EEecCCC-CcCCeEEcCCCCEEEEEEc
Confidence 87763 44556777899999999 67777766653 5899999987654 2333343 8999999999999999888
Q ss_pred CC---eEEEEecC
Q 005096 419 DH---TTKFWCRN 428 (715)
Q Consensus 419 Dg---~I~iWdl~ 428 (715)
|+ .|++||++
T Consensus 374 ~~~~~~l~~~d~~ 386 (415)
T 2hqs_A 374 QGMGSVLNLVSTD 386 (415)
T ss_dssp ETTEEEEEEEETT
T ss_pred CCCccEEEEEECC
Confidence 77 78999875
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=3.9e-25 Score=252.20 Aligned_cols=279 Identities=12% Similarity=0.055 Sum_probs=228.6
Q ss_pred EEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC--CCCceeeeecCCC
Q 005096 151 LWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQN--NMNNVKANKSAHK 228 (715)
Q Consensus 151 ~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~--~~~~~~~~~~~h~ 228 (715)
+|++++.++++++.|++|.+||..+++++.++..+.. +.+++|++|+++|++++.|+.|++||+ .+++++..+. +.
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~-~g 221 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK-IG 221 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE-CC
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe-cC
Confidence 4889999999999999999999999999999884443 899999999999999999999999999 7888777776 45
Q ss_pred CCeEEEEEec----CCCEEEEEEC-CCcEEEEECCCCeeEEEeccc-----------CCceEEEEEcCCCC-EEEEEeCC
Q 005096 229 ESVRDLSFCR----TDLKFCSCSD-DTTVKVWDFARCQEERSLTGH-----------GWDVKSVDWHPTKS-LLVSGGKD 291 (715)
Q Consensus 229 ~~I~~l~~sp----d~~~Las~s~-Dg~V~iwdl~~~~~~~~l~~~-----------~~~I~si~~spdg~-~L~sgs~D 291 (715)
..+..++|++ |+++|++++. +++|.|||..+.+.+..+..+ ...+.++.+++++. ++++...+
T Consensus 222 ~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~ 301 (543)
T 1nir_A 222 IEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKET 301 (543)
T ss_dssp SEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTT
T ss_pred CCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCC
Confidence 6689999999 9999998885 899999999999888877642 23688999999876 45566778
Q ss_pred CcEEEEECCCCceeE--EeccCCCceEEEEEcCCCCEEEEEE-CCCeEEEEECCCCeEEEEeec----CCCCeEEEEEcc
Q 005096 292 SLVKLWDAKSGRELC--SFHGHKNMVLCVKWNQNGNWVLTAS-KDQIIKLYDIRAMKELESFRG----HRKDVTALAWHP 364 (715)
Q Consensus 292 g~I~iwDl~s~~~~~--~~~~~~~~I~sl~~spdg~~Lasgs-~dg~I~iwDl~t~~~~~~~~~----h~~~V~~l~~sp 364 (715)
+.|.+||+.+.+.+. .+. +...+.++.|++++++|++++ .+++|.+||+++++++..+.. |......+ +++
T Consensus 302 g~i~vvd~~~~~~l~~~~i~-~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p 379 (543)
T 1nir_A 302 GKVLLVNYKDIDNLTVTSIG-AAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHP 379 (543)
T ss_dssp TEEEEEECTTSSSCEEEEEE-CCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EET
T ss_pred CeEEEEEecCCCcceeEEec-cCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCC
Confidence 999999998876544 343 556788999999999887665 588999999999999988874 44433333 467
Q ss_pred CCCCEEEEEe-CCCcEEEEEcCCC------CceEEEeeccCCCEEEEEEcCCCCEEEEEE-------CCCeEEEEecCCC
Q 005096 365 FHEEYFVSGS-LDGSIFHWLVGHE------TPQVEIHNVHDNTVWDLAWHPIGYLLCSGS-------NDHTTKFWCRNRP 430 (715)
Q Consensus 365 ~~~~~l~sgs-~DG~I~iwd~~~~------~~~~~~~~~h~~~V~~l~~spdg~~L~sgs-------~Dg~I~iWdl~~~ 430 (715)
+++.+++++. .|++|.|||+++. ..++..+..|...+..+++++|+++|++++ .+++|.|||++..
T Consensus 380 ~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~ 459 (543)
T 1nir_A 380 KYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNL 459 (543)
T ss_dssp TTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCT
T ss_pred CCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCC
Confidence 5577778776 6899999999872 345566667878889999999999999987 3789999999876
Q ss_pred CCc
Q 005096 431 GDT 433 (715)
Q Consensus 431 ~~~ 433 (715)
...
T Consensus 460 ~~~ 462 (543)
T 1nir_A 460 DAK 462 (543)
T ss_dssp TSC
T ss_pred CCC
Confidence 543
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=3.4e-24 Score=228.33 Aligned_cols=272 Identities=10% Similarity=0.067 Sum_probs=221.3
Q ss_pred CccEEEEEEcCCCCEEEEEeC-------CCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEE-EEeCCCcEEEEeC
Q 005096 144 RCSINRVLWTPTGRRLITGSQ-------SGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMV-SGDDGGAIKYWQN 215 (715)
Q Consensus 144 ~~~I~~l~~spdg~~Latgs~-------dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~-tgs~dg~I~iwd~ 215 (715)
...+..++|++++++|++++. ++.|.+||..+++.+..+.. ...+..++|++++++|+ +...++.|.+||.
T Consensus 40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~ 118 (353)
T 3vgz_A 40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN-DLKPFGATINNTTQTLWFGNTVNSAVTAIDA 118 (353)
T ss_dssp ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE-SSCCCSEEEETTTTEEEEEETTTTEEEEEET
T ss_pred ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec-CCCcceEEECCCCCEEEEEecCCCEEEEEeC
Confidence 456889999999999988874 56899999999998888765 34578899999999665 4555799999999
Q ss_pred CCCceeeeecCCCCC---------eEEEEEecCCCEEEEEE--CCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCE
Q 005096 216 NMNNVKANKSAHKES---------VRDLSFCRTDLKFCSCS--DDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSL 284 (715)
Q Consensus 216 ~~~~~~~~~~~h~~~---------I~~l~~spd~~~Las~s--~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~ 284 (715)
.+++.+..+..+... +.+++|+++++++++++ .++.|.+||+++++.+..+..+...+.+++|++++++
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~ 198 (353)
T 3vgz_A 119 KTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKR 198 (353)
T ss_dssp TTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTE
T ss_pred CCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCE
Confidence 999887776554322 78899999999888776 4788999999999998888766667899999999999
Q ss_pred EEEEeCCCcEEEEECCCCceeEEecc----CCCceEEEEEcCCCCEEEEEECC-CeEEEEECCCCeEEEEeecCCCCeEE
Q 005096 285 LVSGGKDSLVKLWDAKSGRELCSFHG----HKNMVLCVKWNQNGNWVLTASKD-QIIKLYDIRAMKELESFRGHRKDVTA 359 (715)
Q Consensus 285 L~sgs~Dg~I~iwDl~s~~~~~~~~~----~~~~I~sl~~spdg~~Lasgs~d-g~I~iwDl~t~~~~~~~~~h~~~V~~ 359 (715)
|++++.++.|.+||+++++.+..+.. +...+.+++|++++++|++++.+ +.|.+||+.+++.+..+.... ...
T Consensus 199 l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~--~~~ 276 (353)
T 3vgz_A 199 LYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE--SLA 276 (353)
T ss_dssp EEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS--CCC
T ss_pred EEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC--Cce
Confidence 99999999999999999988877653 45568899999999988877654 899999999999888887544 367
Q ss_pred EEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCC
Q 005096 360 LAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDH 420 (715)
Q Consensus 360 l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg 420 (715)
++|++++..++++...++.|.+||..+.+....+.. ...+.+++|++|+++|+++..++
T Consensus 277 ~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 277 VLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDT--PTHPNSLALSADGKTLYVSVKQK 335 (353)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEEC--CSEEEEEEECTTSCEEEEEEECC
T ss_pred EEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEec--CCCCCeEEEcCCCCEEEEEEccc
Confidence 999994444556666799999999988765544432 44789999999999877776654
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.94 E-value=6.5e-24 Score=224.68 Aligned_cols=276 Identities=9% Similarity=0.098 Sum_probs=205.9
Q ss_pred EEEcCCCCE-EEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeC-CCcEEEEeCCCCce-eeeecC
Q 005096 150 VLWTPTGRR-LITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDD-GGAIKYWQNNMNNV-KANKSA 226 (715)
Q Consensus 150 l~~spdg~~-Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~-dg~I~iwd~~~~~~-~~~~~~ 226 (715)
..|..++++ +++++.++.|++||.++++.+..+..+...+ +++|++++++|++++. ++.|.+||+.+++. ...+..
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~ 81 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQE 81 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEE
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEeccc
Confidence 345555555 6677788999999999999988888777777 9999999997766655 89999999999887 666666
Q ss_pred CCCCeEEEEEecCCCEEEEEECCC---cEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEE-eCCCc-EEEEECCC
Q 005096 227 HKESVRDLSFCRTDLKFCSCSDDT---TVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSG-GKDSL-VKLWDAKS 301 (715)
Q Consensus 227 h~~~I~~l~~spd~~~Las~s~Dg---~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sg-s~Dg~-I~iwDl~s 301 (715)
+...+.+++|++++++|+++..++ .|++||+++++.+..+.. .....+++|++|+++|+++ ..++. |.+||++.
T Consensus 82 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~ 160 (331)
T 3u4y_A 82 GQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPI-PYDAVGIAISPNGNGLILIDRSSANTVRRFKIDA 160 (331)
T ss_dssp CSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEEC-CTTEEEEEECTTSSCEEEEEETTTTEEEEEEECT
T ss_pred CCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEEC-CCCccceEECCCCCEEEEEecCCCceEEEEEECC
Confidence 666665599999999999555553 899999999988887764 4467899999999855544 55688 99999986
Q ss_pred CceeE----EeccCCCceEEEEEcCCCCEEEEEE-CCCeEEEEECCCCeE---EEEeecCCCCeEEEEEccCCCCEE-EE
Q 005096 302 GRELC----SFHGHKNMVLCVKWNQNGNWVLTAS-KDQIIKLYDIRAMKE---LESFRGHRKDVTALAWHPFHEEYF-VS 372 (715)
Q Consensus 302 ~~~~~----~~~~~~~~I~sl~~spdg~~Lasgs-~dg~I~iwDl~t~~~---~~~~~~h~~~V~~l~~sp~~~~~l-~s 372 (715)
...+. ..........+++|++|+++|++++ .++.|++||+++++. +..+.. ...+..++|++ ++++| ++
T Consensus 161 ~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~-~~~~~~~~~sp-dg~~l~v~ 238 (331)
T 3u4y_A 161 DGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGT-NNLPGTIVVSR-DGSTVYVL 238 (331)
T ss_dssp TCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEEC-SSCCCCEEECT-TSSEEEEE
T ss_pred CCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccC-CCCCceEEECC-CCCEEEEE
Confidence 44332 1123345689999999999776655 688999999998887 777664 46778999999 66655 44
Q ss_pred EeCCCcEEEEEcCCCCce--EEEeec---cC---CCEEEEEEcCCCCEEEEEEC-CCeEEEEecCC
Q 005096 373 GSLDGSIFHWLVGHETPQ--VEIHNV---HD---NTVWDLAWHPIGYLLCSGSN-DHTTKFWCRNR 429 (715)
Q Consensus 373 gs~DG~I~iwd~~~~~~~--~~~~~~---h~---~~V~~l~~spdg~~L~sgs~-Dg~I~iWdl~~ 429 (715)
...++.|.+||..+++.. ..+... +. ..+..++|++|+++|++++. ++.|.+||++.
T Consensus 239 ~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~ 304 (331)
T 3u4y_A 239 TESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISG 304 (331)
T ss_dssp CSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTS
T ss_pred EcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecC
Confidence 456788999999876541 111111 11 12356899999998866655 66999999965
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.94 E-value=2.4e-25 Score=261.95 Aligned_cols=283 Identities=12% Similarity=0.102 Sum_probs=213.4
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCC---CEEEEEEcCCCCEEEEEeCC---------CcEEEE
Q 005096 146 SINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDH---AIRSMVWSHNDNWMVSGDDG---------GAIKYW 213 (715)
Q Consensus 146 ~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~---~V~~l~~spdg~~L~tgs~d---------g~I~iw 213 (715)
.+.+++|++||++|++ +.||+|++||+.+++....+..|.. .|.+++|++||++|++++.+ +.|++|
T Consensus 18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~ 96 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLS 96 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEE
T ss_pred cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEE
Confidence 4678899999997766 7899999999999998888887765 49999999999999998764 778899
Q ss_pred eCCCCceeee--ecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCce------------------
Q 005096 214 QNNMNNVKAN--KSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDV------------------ 273 (715)
Q Consensus 214 d~~~~~~~~~--~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I------------------ 273 (715)
|+++++.... ...+...+..++|+||++.|++++. +.|++||+.+++.......+...+
T Consensus 97 d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~ 175 (723)
T 1xfd_A 97 KIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTH 175 (723)
T ss_dssp ESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSS
T ss_pred ECCCCceEeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCc
Confidence 9998875222 2234445889999999999999886 789999998887766555433333
Q ss_pred EEEEEcCCCCEEEEEeCCC----------------------------------cEEEEECCCCceeEEeccC------CC
Q 005096 274 KSVDWHPTKSLLVSGGKDS----------------------------------LVKLWDAKSGRELCSFHGH------KN 313 (715)
Q Consensus 274 ~si~~spdg~~L~sgs~Dg----------------------------------~I~iwDl~s~~~~~~~~~~------~~ 313 (715)
.+++|+|||++|++++.|+ .|++||+.+++....+..+ ..
T Consensus 176 ~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~ 255 (723)
T 1xfd_A 176 IAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREY 255 (723)
T ss_dssp EEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSE
T ss_pred ceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccc
Confidence 7899999999999887553 7999999988866666543 56
Q ss_pred ceEEEEEcCCCCEEEEEEC----CCeEEEEECCCCeEEEEeecC-CCCe----EEEEEccCCCCEEEE-EeCCC------
Q 005096 314 MVLCVKWNQNGNWVLTASK----DQIIKLYDIRAMKELESFRGH-RKDV----TALAWHPFHEEYFVS-GSLDG------ 377 (715)
Q Consensus 314 ~I~sl~~spdg~~Lasgs~----dg~I~iwDl~t~~~~~~~~~h-~~~V----~~l~~sp~~~~~l~s-gs~DG------ 377 (715)
.+.+++|++||++|++.+. +..|++||+.+++....+..+ ...+ ..++|+|++..++++ +..++
T Consensus 256 ~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~ 335 (723)
T 1xfd_A 256 YITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFY 335 (723)
T ss_dssp EEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEE
T ss_pred eeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCccee
Confidence 7899999999998877653 357999999998877665433 3333 378999955555554 56777
Q ss_pred cEEEEEcCCCCc---eEEEeeccCCCEEE-EEEcCCCCEEEEEECC---CeEEEEecCCCC
Q 005096 378 SIFHWLVGHETP---QVEIHNVHDNTVWD-LAWHPIGYLLCSGSND---HTTKFWCRNRPG 431 (715)
Q Consensus 378 ~I~iwd~~~~~~---~~~~~~~h~~~V~~-l~~spdg~~L~sgs~D---g~I~iWdl~~~~ 431 (715)
.|++||+..... ...+. .+...+.. ++|++|++.|+..+.+ +.++||+++..+
T Consensus 336 ~l~~~d~~~~~~~~~~~~l~-~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~ 395 (723)
T 1xfd_A 336 HITVSSSQPNSSNDNIQSIT-SGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVG 395 (723)
T ss_dssp EEEEECSSCCSSSCCCCBSC-CSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSST
T ss_pred EEEEEeccCCCCccceeEee-cCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCC
Confidence 466666323322 22222 23344554 6999999999877665 789999997654
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=9.8e-25 Score=256.32 Aligned_cols=280 Identities=11% Similarity=0.097 Sum_probs=213.8
Q ss_pred CccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCC-----C
Q 005096 144 RCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNM-----N 218 (715)
Q Consensus 144 ~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~-----~ 218 (715)
...|.+++||+| ++|+++. ++.|++||+.+++... +..+...+.+++|++||++|+++ .|+.|++||+.+ +
T Consensus 81 ~~~v~~~~~spd-~~~~~~~-~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g 156 (706)
T 2z3z_A 81 AFPSFRTLDAGR-GLVVLFT-QGGLVGFDMLARKVTY-LFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMS 156 (706)
T ss_dssp -CCCEEEEETTT-TEEEEEE-TTEEEEEETTTTEEEE-EECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCC
T ss_pred ccCceeEEECCC-CeEEEEE-CCEEEEEECCCCceEE-ccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCC
Confidence 457999999999 6666664 5899999999876554 44567778999999999999885 679999999998 7
Q ss_pred ceeeeecCCCCC--------------eEEEEEecCCCEEEEEE---------------------------------CCCc
Q 005096 219 NVKANKSAHKES--------------VRDLSFCRTDLKFCSCS---------------------------------DDTT 251 (715)
Q Consensus 219 ~~~~~~~~h~~~--------------I~~l~~spd~~~Las~s---------------------------------~Dg~ 251 (715)
+.......+... +.+++|++|+++|++++ .+..
T Consensus 157 ~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~ 236 (706)
T 2z3z_A 157 RAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVT 236 (706)
T ss_dssp CCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEE
T ss_pred CcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeE
Confidence 666544444433 48999999999999987 4467
Q ss_pred EEEEECCCCeeEEEec--ccCCceEEEEEcCCCCEEEEEeCCC-----cEEEEECCCCceeEEec--cCCC---ceEEEE
Q 005096 252 VKVWDFARCQEERSLT--GHGWDVKSVDWHPTKSLLVSGGKDS-----LVKLWDAKSGRELCSFH--GHKN---MVLCVK 319 (715)
Q Consensus 252 V~iwdl~~~~~~~~l~--~~~~~I~si~~spdg~~L~sgs~Dg-----~I~iwDl~s~~~~~~~~--~~~~---~I~sl~ 319 (715)
|++||+.+++...... .+...+.+++|++|+++|++++.|+ .|++||+++++.+..+. .+.. .+.+++
T Consensus 237 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~ 316 (706)
T 2z3z_A 237 VGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLT 316 (706)
T ss_dssp EEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCE
T ss_pred EEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCce
Confidence 9999999887654442 4567799999999999999887775 89999999984443332 1222 246789
Q ss_pred EcC--CCCEEEEEECCCeEEEEECC-CCeEEEEeecCCCCeEE-EEEccCCCCEEEEEeCCC----cEEEEEcCCCCceE
Q 005096 320 WNQ--NGNWVLTASKDQIIKLYDIR-AMKELESFRGHRKDVTA-LAWHPFHEEYFVSGSLDG----SIFHWLVGHETPQV 391 (715)
Q Consensus 320 ~sp--dg~~Lasgs~dg~I~iwDl~-t~~~~~~~~~h~~~V~~-l~~sp~~~~~l~sgs~DG----~I~iwd~~~~~~~~ 391 (715)
|++ |+++|++++.|+.++||+++ +++.+..+..+...+.+ ++|++++..++++++.++ .|+.||+.++. .
T Consensus 317 ~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~--~ 394 (706)
T 2z3z_A 317 FLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK--T 394 (706)
T ss_dssp ECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC--C
T ss_pred eecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC--c
Confidence 999 99999999999999999886 67778888888888877 799994444555555555 56666766544 2
Q ss_pred EEeeccCCCEEEEEEcCCCCEEEEEECC----CeEEEEecCCC
Q 005096 392 EIHNVHDNTVWDLAWHPIGYLLCSGSND----HTTKFWCRNRP 430 (715)
Q Consensus 392 ~~~~~h~~~V~~l~~spdg~~L~sgs~D----g~I~iWdl~~~ 430 (715)
..+. +...+.+++|++|+++|+..+.+ +.|++||++..
T Consensus 395 ~~l~-~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~ 436 (706)
T 2z3z_A 395 KDLT-PESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKG 436 (706)
T ss_dssp EESC-CSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSC
T ss_pred eecc-CCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCC
Confidence 3332 56789999999999988876544 56999998653
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.94 E-value=6.4e-25 Score=259.25 Aligned_cols=279 Identities=11% Similarity=0.070 Sum_probs=217.0
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc--eEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceee
Q 005096 145 CSINRVLWTPTGRRLITGSQSGEFTLWNGQSFN--FEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKA 222 (715)
Q Consensus 145 ~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~--~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~ 222 (715)
..|.+++|||||++|++++. +.|++||+.+++ ....+..+...+.+++|++||++|++++. +.|++||+.+++...
T Consensus 109 ~~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~-~~i~~~d~~~g~~~~ 186 (741)
T 2ecf_A 109 TGIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRG-RNLWVIDLASGRQMQ 186 (741)
T ss_dssp EESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEET-TEEEEEETTTTEEEE
T ss_pred cCcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeC-CcEEEEecCCCCEEE
Confidence 45889999999999999987 899999999873 44556778889999999999999998874 689999999887665
Q ss_pred eecCCCCC----------------eEEEEEecCCCEEEEEECCC---------------------------------cEE
Q 005096 223 NKSAHKES----------------VRDLSFCRTDLKFCSCSDDT---------------------------------TVK 253 (715)
Q Consensus 223 ~~~~h~~~----------------I~~l~~spd~~~Las~s~Dg---------------------------------~V~ 253 (715)
....+... +.+++|++|+++|++++.|+ .|+
T Consensus 187 ~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~ 266 (741)
T 2ecf_A 187 LTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLG 266 (741)
T ss_dssp CCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEE
T ss_pred eccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEE
Confidence 55444332 47899999999999988765 789
Q ss_pred EEECCC-CeeEEEec--ccCCceEEEEEcCCCCEEEEEeC-----CCcEEEEECCCCceeEEeccCCC----ceEEEEEc
Q 005096 254 VWDFAR-CQEERSLT--GHGWDVKSVDWHPTKSLLVSGGK-----DSLVKLWDAKSGRELCSFHGHKN----MVLCVKWN 321 (715)
Q Consensus 254 iwdl~~-~~~~~~l~--~~~~~I~si~~spdg~~L~sgs~-----Dg~I~iwDl~s~~~~~~~~~~~~----~I~sl~~s 321 (715)
+||+.+ ++...... .+...+.+++| +|+++|++++. +..|++||+++++....+..+.. .+.+++|+
T Consensus 267 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~s 345 (741)
T 2ecf_A 267 VISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFL 345 (741)
T ss_dssp EECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEEC
T ss_pred EEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEEC
Confidence 999988 76554433 36678999999 99999887764 56799999999987776654432 35689999
Q ss_pred CCCCEEEEEECCCeEEEEECC-CCeEEEEeecCCCCeEEE-EEccCCCCEEEEEeCCC--cEEEEEcCCCCceEEEeecc
Q 005096 322 QNGNWVLTASKDQIIKLYDIR-AMKELESFRGHRKDVTAL-AWHPFHEEYFVSGSLDG--SIFHWLVGHETPQVEIHNVH 397 (715)
Q Consensus 322 pdg~~Lasgs~dg~I~iwDl~-t~~~~~~~~~h~~~V~~l-~~sp~~~~~l~sgs~DG--~I~iwd~~~~~~~~~~~~~h 397 (715)
+||++|++++.|+.++||.+. +++ +..+..+...|..+ .|++++..++++++.++ .++||+++........+..
T Consensus 346 pdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~- 423 (741)
T 2ecf_A 346 DDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLSK- 423 (741)
T ss_dssp TTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECCC-
T ss_pred CCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeeccc-
Confidence 999988899999988888765 345 77788888888887 59994444555666666 8999998754333334433
Q ss_pred CCCEEEEEEcCCCCEEEEEECC----CeEEEEecC
Q 005096 398 DNTVWDLAWHPIGYLLCSGSND----HTTKFWCRN 428 (715)
Q Consensus 398 ~~~V~~l~~spdg~~L~sgs~D----g~I~iWdl~ 428 (715)
...+.+++|++|+++|+....+ ..+.+|+.+
T Consensus 424 ~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~ 458 (741)
T 2ecf_A 424 APGMHSASFARNASVYVDSWSNNSTPPQIELFRAN 458 (741)
T ss_dssp SCSEEEEEECTTSSEEEEEEEETTEEEEEEEEETT
T ss_pred CCCceEEEECCCCCEEEEEecCCCCCCeEEEEEcC
Confidence 5678999999999988776544 467888764
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.93 E-value=3.4e-24 Score=226.85 Aligned_cols=269 Identities=10% Similarity=0.088 Sum_probs=193.8
Q ss_pred EEEEeCCCeEEEEeCC-CCce-EEEEeccCCCEEEEEEcCCCCEEEEEeCC-CcEEEEeCC--CCce--eeeecCCCCCe
Q 005096 159 LITGSQSGEFTLWNGQ-SFNF-EMILQAHDHAIRSMVWSHNDNWMVSGDDG-GAIKYWQNN--MNNV--KANKSAHKESV 231 (715)
Q Consensus 159 Latgs~dg~I~Iwd~~-~~~~-~~~l~~h~~~V~~l~~spdg~~L~tgs~d-g~I~iwd~~--~~~~--~~~~~~h~~~I 231 (715)
+++++.|+.|++||++ +++. ......+...+.+++|++++++|++++.+ +.|.+|+++ +++. +..+..+ ..+
T Consensus 8 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-~~~ 86 (343)
T 1ri6_A 8 YIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALP-GSL 86 (343)
T ss_dssp EEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECS-SCC
T ss_pred EEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccC-CCC
Confidence 4444779999999985 3322 22223467789999999999999888876 999999987 4443 3333333 388
Q ss_pred EEEEEecCCCEEEEEEC-CCcEEEEECC---CCeeEEEecccCCceEEEEEcCCCCEEEEEe-CCCcEEEEECCC-Ccee
Q 005096 232 RDLSFCRTDLKFCSCSD-DTTVKVWDFA---RCQEERSLTGHGWDVKSVDWHPTKSLLVSGG-KDSLVKLWDAKS-GREL 305 (715)
Q Consensus 232 ~~l~~spd~~~Las~s~-Dg~V~iwdl~---~~~~~~~l~~~~~~I~si~~spdg~~L~sgs-~Dg~I~iwDl~s-~~~~ 305 (715)
.+++|++++++|++++. ++.|++||+. ..+.+..+. ....+.+++|++++++|++++ .++.|++||+++ ++..
T Consensus 87 ~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~ 165 (343)
T 1ri6_A 87 THISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVE-GLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLV 165 (343)
T ss_dssp SEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEEC-CCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEE
T ss_pred cEEEEcCCCCEEEEEecCCCeEEEEECCCCcccccccccc-CCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCcee
Confidence 99999999998877765 8889999994 334444444 334689999999999888877 889999999987 5443
Q ss_pred E----Eec-cCCCceEEEEEcCCCCEEEEEE-CCCeEEEEECCC--CeE--EEEeec---C---CCCeEEEEEccCCCCE
Q 005096 306 C----SFH-GHKNMVLCVKWNQNGNWVLTAS-KDQIIKLYDIRA--MKE--LESFRG---H---RKDVTALAWHPFHEEY 369 (715)
Q Consensus 306 ~----~~~-~~~~~I~sl~~spdg~~Lasgs-~dg~I~iwDl~t--~~~--~~~~~~---h---~~~V~~l~~sp~~~~~ 369 (715)
. .+. .....+.+++|++++++|++++ .++.|++||++. ++. +..+.. . ...+.+++|++ ++++
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~-dg~~ 244 (343)
T 1ri6_A 166 AQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITP-DGRH 244 (343)
T ss_dssp EEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECT-TSSE
T ss_pred eecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECC-CCCE
Confidence 2 222 2345788999999999877665 789999999953 332 223321 1 23577899999 5555
Q ss_pred E-EEEeCCCcEEEEEcCCC--C-ceEEEeeccCCCEEEEEEcCCCCEEEEEE-CCCeEEEEecCCCC
Q 005096 370 F-VSGSLDGSIFHWLVGHE--T-PQVEIHNVHDNTVWDLAWHPIGYLLCSGS-NDHTTKFWCRNRPG 431 (715)
Q Consensus 370 l-~sgs~DG~I~iwd~~~~--~-~~~~~~~~h~~~V~~l~~spdg~~L~sgs-~Dg~I~iWdl~~~~ 431 (715)
| +++..++.|.+||++.. . ........+. .+.+++|++++++|++++ .|+.|.+|+++...
T Consensus 245 l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~ 310 (343)
T 1ri6_A 245 LYACDRTASLITVFSVSEDGSVLSKEGFQPTET-QPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQ 310 (343)
T ss_dssp EEEEETTTTEEEEEEECTTSCCEEEEEEEECSS-SCCCEEECTTSSEEEEECTTTCEEEEEEEETTT
T ss_pred EEEEecCCCEEEEEEEcCCCCceEEeeeecCCC-ccceEEECCCCCEEEEecCCCCeEEEEEEcCCC
Confidence 4 46668999999999842 2 2222232233 488999999999888887 68999999886543
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.9e-24 Score=221.35 Aligned_cols=254 Identities=10% Similarity=0.103 Sum_probs=199.0
Q ss_pred EeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCC-CceeeeecCC-CCCeEEEEEecC
Q 005096 162 GSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNM-NNVKANKSAH-KESVRDLSFCRT 239 (715)
Q Consensus 162 gs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~-~~~~~~~~~h-~~~I~~l~~spd 239 (715)
++.|++|++||+.+++.. .+..|...|.+++|++++++|++++ ++.|++||+++ ++.......+ ...|.+++|+++
T Consensus 18 ~~~~~~i~~~d~~~~~~~-~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spd 95 (297)
T 2ojh_A 18 GSMRSSIEIFNIRTRKMR-VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPD 95 (297)
T ss_dssp CCCCEEEEEEETTTTEEE-EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTT
T ss_pred CCcceeEEEEeCCCCcee-eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCC
Confidence 456889999999988766 4556889999999999999999886 78999999998 7776666555 367899999999
Q ss_pred CCEEEEEEC--CCcEEEE--ECCCCeeEEEecccCCceEEEEEcCCCCEEE-EEeCCCcEEEEECCC-CceeEEeccCCC
Q 005096 240 DLKFCSCSD--DTTVKVW--DFARCQEERSLTGHGWDVKSVDWHPTKSLLV-SGGKDSLVKLWDAKS-GRELCSFHGHKN 313 (715)
Q Consensus 240 ~~~Las~s~--Dg~V~iw--dl~~~~~~~~l~~~~~~I~si~~spdg~~L~-sgs~Dg~I~iwDl~s-~~~~~~~~~~~~ 313 (715)
+++|++++. ++.+.|| |+.+++ ...+..+ ..+.+++|++++++|+ ++..|+.++||+++. +.....+..+..
T Consensus 96 g~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 173 (297)
T 2ojh_A 96 GALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEG 173 (297)
T ss_dssp SSEEEEEECTTTSSCEEEEEETTCCC-CEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSS
T ss_pred CCEEEEEEeCCCCcceEEEEECCCCc-eEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCC
Confidence 999999983 3445554 555544 3444433 3488999999999777 677899999998642 334556666788
Q ss_pred ceEEEEEcCCCCEEEEEE-CCCeEEEEECC-CCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCC-----------CcEE
Q 005096 314 MVLCVKWNQNGNWVLTAS-KDQIIKLYDIR-AMKELESFRGHRKDVTALAWHPFHEEYFVSGSLD-----------GSIF 380 (715)
Q Consensus 314 ~I~sl~~spdg~~Lasgs-~dg~I~iwDl~-t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~D-----------G~I~ 380 (715)
.+.+++|++++++|++++ .++.++||+++ .+..+..+..+...+.+++|++ ++++|++++.+ +.|+
T Consensus 174 ~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~~~~~l~ 252 (297)
T 2ojh_A 174 RNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSP-SGDKVVFVSYDADVFDHPRDLDVRVQ 252 (297)
T ss_dssp CEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECT-TSSEEEEEEEETTCCSCCSSEEEEEE
T ss_pred ccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECC-CCCEEEEEEcCCCCCcccccCceEEE
Confidence 899999999999888776 58899999986 5666777877888899999999 77777777655 5699
Q ss_pred EEEcCCCCceEE-EeeccCCCEEEEEEcCCCCEEEEEECCC
Q 005096 381 HWLVGHETPQVE-IHNVHDNTVWDLAWHPIGYLLCSGSNDH 420 (715)
Q Consensus 381 iwd~~~~~~~~~-~~~~h~~~V~~l~~spdg~~L~sgs~Dg 420 (715)
+||+.+...... ....|...|.+++|++++++|++++.|.
T Consensus 253 ~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 253 LMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred EEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 999987654322 2335778899999999999998887664
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.92 E-value=2.5e-23 Score=219.64 Aligned_cols=266 Identities=6% Similarity=0.007 Sum_probs=209.2
Q ss_pred CEEEEEeCCCeEEEEeCCCCceEEEEeccCC--CEEEEEEcCCCCEEE-EEeCCCcEEEEeCCCCceeeeecCC-----C
Q 005096 157 RRLITGSQSGEFTLWNGQSFNFEMILQAHDH--AIRSMVWSHNDNWMV-SGDDGGAIKYWQNNMNNVKANKSAH-----K 228 (715)
Q Consensus 157 ~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~--~V~~l~~spdg~~L~-tgs~dg~I~iwd~~~~~~~~~~~~h-----~ 228 (715)
++|++++.++.|++||..+++.+..+..... .+.+++|++++++|+ ++..++.|.+||+.+++.+..+... .
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~ 81 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV 81 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccc
Confidence 4789999999999999999988887764332 578999999998764 5566789999999998877655432 2
Q ss_pred CCeEEEEEecCCCEEEEEE------------CCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEE
Q 005096 229 ESVRDLSFCRTDLKFCSCS------------DDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKL 296 (715)
Q Consensus 229 ~~I~~l~~spd~~~Las~s------------~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~i 296 (715)
..+.+++|++++++|++++ .++.|++||+.+++.+..+.. ...+.+++|++++++|+++ ++.|++
T Consensus 82 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~ 158 (337)
T 1pby_B 82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHV 158 (337)
T ss_dssp ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEE
T ss_pred ccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEE
Confidence 2678899999999998886 579999999999888777764 4568899999999988887 688999
Q ss_pred EECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCC------------------------eEEEEECCCCeEE-EEee
Q 005096 297 WDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQ------------------------IIKLYDIRAMKEL-ESFR 351 (715)
Q Consensus 297 wDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg------------------------~I~iwDl~t~~~~-~~~~ 351 (715)
||+++++.+..+..... ...+.|++++++|++.+.++ .|.+||+++++.. ..+.
T Consensus 159 ~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~ 237 (337)
T 1pby_B 159 MDPEAGTLVEDKPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVR 237 (337)
T ss_dssp EETTTTEEEEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEE
T ss_pred EECCCCcEeeeeecccc-CCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecC
Confidence 99999988877764331 11337889888766554332 4789999988764 3344
Q ss_pred cCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCCCC
Q 005096 352 GHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPG 431 (715)
Q Consensus 352 ~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~ 431 (715)
.+...+.+++|++ ++++|+++ ++.|++||+.+.+....+. ....+.+++|++|+++|++++.|+.|++||++...
T Consensus 238 ~~~~~~~~~~~s~-dg~~l~~~--~~~v~~~d~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~ 312 (337)
T 1pby_B 238 IMDVFYFSTAVNP-AKTRAFGA--YNVLESFDLEKNASIKRVP--LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLE 312 (337)
T ss_dssp ECSSCEEEEEECT-TSSEEEEE--ESEEEEEETTTTEEEEEEE--CSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCC
T ss_pred CCCCceeeEEECC-CCCEEEEe--CCeEEEEECCCCcCcceec--CCCceeeEEECCCCCEEEEEcCCCcEEEEECcCCc
Confidence 5667788999999 77777777 6899999998776554443 23568899999999999999999999999997644
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.92 E-value=5.9e-23 Score=217.27 Aligned_cols=263 Identities=8% Similarity=0.099 Sum_probs=187.6
Q ss_pred CCccEEEEEEcCCCCEEEEEeCC-CeEEEEeCC--CCce--EEEEeccCCCEEEEEEcCCCCEEEEEeC-CCcEEEEeCC
Q 005096 143 NRCSINRVLWTPTGRRLITGSQS-GEFTLWNGQ--SFNF--EMILQAHDHAIRSMVWSHNDNWMVSGDD-GGAIKYWQNN 216 (715)
Q Consensus 143 H~~~I~~l~~spdg~~Latgs~d-g~I~Iwd~~--~~~~--~~~l~~h~~~V~~l~~spdg~~L~tgs~-dg~I~iwd~~ 216 (715)
|...+.+++|++++++|++++.+ +.|++|+++ +++. +..+..+. .+.+++|++++++|++++. ++.|.+||++
T Consensus 36 ~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~ 114 (343)
T 1ri6_A 36 VPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLE 114 (343)
T ss_dssp CSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred cCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECC
Confidence 55678899999999999998887 999999987 4443 34444433 7889999999998876654 7899999994
Q ss_pred ---CCceeeeecCCCCCeEEEEEecCCCEEEEEE-CCCcEEEEECCC-CeeEE----Eec-ccCCceEEEEEcCCCCEEE
Q 005096 217 ---MNNVKANKSAHKESVRDLSFCRTDLKFCSCS-DDTTVKVWDFAR-CQEER----SLT-GHGWDVKSVDWHPTKSLLV 286 (715)
Q Consensus 217 ---~~~~~~~~~~h~~~I~~l~~spd~~~Las~s-~Dg~V~iwdl~~-~~~~~----~l~-~~~~~I~si~~spdg~~L~ 286 (715)
..+....+. ....+.+++|++++++|++++ .++.|++||+.+ ++... .+. .....+.+++|++++++|+
T Consensus 115 ~~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~ 193 (343)
T 1ri6_A 115 DGLPVGVVDVVE-GLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAY 193 (343)
T ss_dssp TTEEEEEEEEEC-CCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEE
T ss_pred CCcccccccccc-CCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEE
Confidence 333444433 344689999999999888887 899999999987 54432 222 2345788999999999776
Q ss_pred EEe-CCCcEEEEECCC--Cce--eEEecc------CCCceEEEEEcCCCCEEEEEE-CCCeEEEEECC----CCeEEEEe
Q 005096 287 SGG-KDSLVKLWDAKS--GRE--LCSFHG------HKNMVLCVKWNQNGNWVLTAS-KDQIIKLYDIR----AMKELESF 350 (715)
Q Consensus 287 sgs-~Dg~I~iwDl~s--~~~--~~~~~~------~~~~I~sl~~spdg~~Lasgs-~dg~I~iwDl~----t~~~~~~~ 350 (715)
+++ .++.|++||++. ++. +..+.. ....+.+++|++++++|+++. .++.|++||++ +.+.+..+
T Consensus 194 ~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~ 273 (343)
T 1ri6_A 194 CVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQ 273 (343)
T ss_dssp EEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEE
T ss_pred EEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeee
Confidence 555 789999999953 432 222221 123577899999999888655 78999999998 34555556
Q ss_pred ecCCCCeEEEEEccCCCCEEEEEe-CCCcEEEEEcCCCCce---EEEeeccCCCEEEEEEcCCC
Q 005096 351 RGHRKDVTALAWHPFHEEYFVSGS-LDGSIFHWLVGHETPQ---VEIHNVHDNTVWDLAWHPIG 410 (715)
Q Consensus 351 ~~h~~~V~~l~~sp~~~~~l~sgs-~DG~I~iwd~~~~~~~---~~~~~~h~~~V~~l~~spdg 410 (715)
..+.. +.+++|++ ++++|++++ .++.|.+|+++..... ..... ......+++|.++.
T Consensus 274 ~~~~~-~~~~~~s~-dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~-~g~~p~~i~~~~~~ 334 (343)
T 1ri6_A 274 PTETQ-PRGFNVDH-SGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYA-VGQGPMWVVVNAHE 334 (343)
T ss_dssp ECSSS-CCCEEECT-TSSEEEEECTTTCEEEEEEEETTTTEEEEEEEEE-CSSSCCEEEEEEEC
T ss_pred cCCCc-cceEEECC-CCCEEEEecCCCCeEEEEEEcCCCceeeEccccc-cCCCCeeEEEEccc
Confidence 55544 89999999 667666666 6899999976533211 11121 12345566666543
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.92 E-value=7.8e-24 Score=249.04 Aligned_cols=270 Identities=12% Similarity=0.081 Sum_probs=197.7
Q ss_pred cEEEEEEcCCCCEEEEEeCC---------CeEEEEeCCCCceEEEEe---ccCCCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 005096 146 SINRVLWTPTGRRLITGSQS---------GEFTLWNGQSFNFEMILQ---AHDHAIRSMVWSHNDNWMVSGDDGGAIKYW 213 (715)
Q Consensus 146 ~I~~l~~spdg~~Latgs~d---------g~I~Iwd~~~~~~~~~l~---~h~~~V~~l~~spdg~~L~tgs~dg~I~iw 213 (715)
.|.+++|||||++|++++.+ +.|+|||+.+++. ..+. .|...+.+++|+|||++|++++. +.|++|
T Consensus 62 ~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~ 139 (723)
T 1xfd_A 62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYC 139 (723)
T ss_dssp TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEE
T ss_pred ccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEE
Confidence 48999999999999999874 7888999998876 3333 34445889999999999998876 799999
Q ss_pred eCCCCceeeeecCCCCCe------------------EEEEEecCCCEEEEEECCC-------------------------
Q 005096 214 QNNMNNVKANKSAHKESV------------------RDLSFCRTDLKFCSCSDDT------------------------- 250 (715)
Q Consensus 214 d~~~~~~~~~~~~h~~~I------------------~~l~~spd~~~Las~s~Dg------------------------- 250 (715)
|+.+++.......+...+ .+++|++|+++|++++.|+
T Consensus 140 ~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (723)
T 1xfd_A 140 AHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYP 219 (723)
T ss_dssp SSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECC
T ss_pred ECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCC
Confidence 999887766555444333 7899999999999887553
Q ss_pred ---------cEEEEECCCCeeEEEeccc------CCceEEEEEcCCCCEEEEEeC----CCcEEEEECCCCceeEEecc-
Q 005096 251 ---------TVKVWDFARCQEERSLTGH------GWDVKSVDWHPTKSLLVSGGK----DSLVKLWDAKSGRELCSFHG- 310 (715)
Q Consensus 251 ---------~V~iwdl~~~~~~~~l~~~------~~~I~si~~spdg~~L~sgs~----Dg~I~iwDl~s~~~~~~~~~- 310 (715)
.|++||+.+++....+..+ ...+.+++|+|||++|++.+. +..|++||+.++++...+..
T Consensus 220 ~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~ 299 (723)
T 1xfd_A 220 KAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDE 299 (723)
T ss_dssp BTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEE
T ss_pred CCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEec
Confidence 7999999888765555543 567899999999998877653 35799999999887666543
Q ss_pred CCCce----EEEEEcCCCCEEEE--EECCC------eEEEEE-CCCCe--EEEEeecCCCCeEE-EEEccCCCCEEEEEe
Q 005096 311 HKNMV----LCVKWNQNGNWVLT--ASKDQ------IIKLYD-IRAMK--ELESFRGHRKDVTA-LAWHPFHEEYFVSGS 374 (715)
Q Consensus 311 ~~~~I----~sl~~spdg~~Las--gs~dg------~I~iwD-l~t~~--~~~~~~~h~~~V~~-l~~sp~~~~~l~sgs 374 (715)
+...+ .+++|++||++|++ +..++ .|++|| ..+++ ++..+......+.. ++|++ +++.|+..+
T Consensus 300 ~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~sp-dg~~l~~~~ 378 (723)
T 1xfd_A 300 SEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDE-KGNKIYFLS 378 (723)
T ss_dssp CSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEET-TTTEEEEEE
T ss_pred cCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcC-CCCEEEEEE
Confidence 33433 37899999997775 44666 577777 34443 14555544445554 69999 566665544
Q ss_pred -CC--CcEEEEEcCCCCc-eEEEeec---cCCCEEEEEEcCCCCEEEEEEC
Q 005096 375 -LD--GSIFHWLVGHETP-QVEIHNV---HDNTVWDLAWHPIGYLLCSGSN 418 (715)
Q Consensus 375 -~D--G~I~iwd~~~~~~-~~~~~~~---h~~~V~~l~~spdg~~L~sgs~ 418 (715)
.+ +.++||+++.... ....+.. |...+..++|++|+++|+....
T Consensus 379 ~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~~ 429 (723)
T 1xfd_A 379 TEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCE 429 (723)
T ss_dssp SSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECC
T ss_pred cCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEEcc
Confidence 44 7899999875432 1222222 5667889999999988877543
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.8e-23 Score=215.34 Aligned_cols=231 Identities=13% Similarity=0.136 Sum_probs=182.0
Q ss_pred CCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCC-CceEEEEeccC-CCEEEEEEcCCCCEEEEEe--CCCcEEEEe--C
Q 005096 142 KNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQS-FNFEMILQAHD-HAIRSMVWSHNDNWMVSGD--DGGAIKYWQ--N 215 (715)
Q Consensus 142 ~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~-~~~~~~l~~h~-~~V~~l~~spdg~~L~tgs--~dg~I~iwd--~ 215 (715)
.|...|.+++|++|+++|++++ ++.|++||+.+ ++....+..+. ..|.+++|++++++|++++ .++.+.||. +
T Consensus 39 ~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~ 117 (297)
T 2ojh_A 39 QTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPS 117 (297)
T ss_dssp EESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEET
T ss_pred cCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEEC
Confidence 4678899999999999999987 78999999999 88777766663 6789999999999999988 334555554 4
Q ss_pred CCCceeeeecCCCCCeEEEEEecCCCEEE-EEECCCcEEEEECC-CCeeEEEecccCCceEEEEEcCCCCEEEEEe-CCC
Q 005096 216 NMNNVKANKSAHKESVRDLSFCRTDLKFC-SCSDDTTVKVWDFA-RCQEERSLTGHGWDVKSVDWHPTKSLLVSGG-KDS 292 (715)
Q Consensus 216 ~~~~~~~~~~~h~~~I~~l~~spd~~~La-s~s~Dg~V~iwdl~-~~~~~~~l~~~~~~I~si~~spdg~~L~sgs-~Dg 292 (715)
.++.. ..+.. ...+.+++|++++++|+ +++.|+.++||+++ .......+..+...+.+++|++++++|++++ .++
T Consensus 118 ~~~~~-~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~ 195 (297)
T 2ojh_A 118 TGGTP-RLMTK-NLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTG 195 (297)
T ss_dssp TCCCC-EECCS-SSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTS
T ss_pred CCCce-EEeec-CCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCC
Confidence 54443 23333 33489999999999877 77789999999863 2234456666778899999999999887766 589
Q ss_pred cEEEEECC-CCceeEEeccCCCceEEEEEcCCCCEEEEEECC-----------CeEEEEECCCCeE--EEEeecCCCCeE
Q 005096 293 LVKLWDAK-SGRELCSFHGHKNMVLCVKWNQNGNWVLTASKD-----------QIIKLYDIRAMKE--LESFRGHRKDVT 358 (715)
Q Consensus 293 ~I~iwDl~-s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~d-----------g~I~iwDl~t~~~--~~~~~~h~~~V~ 358 (715)
.++||+++ .+..+..+..+...+.+++|++++++|++++.+ +.|++||+++++. +..+..|...+.
T Consensus 196 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~ 275 (297)
T 2ojh_A 196 QMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMN 275 (297)
T ss_dssp SCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSC
T ss_pred CccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccc
Confidence 99999886 566677777788889999999999999988765 5699999988765 444557888999
Q ss_pred EEEEccCCCCEEEEEeCC
Q 005096 359 ALAWHPFHEEYFVSGSLD 376 (715)
Q Consensus 359 ~l~~sp~~~~~l~sgs~D 376 (715)
+++|++ ++++|++++.+
T Consensus 276 ~~~~sp-dg~~l~~~~~~ 292 (297)
T 2ojh_A 276 SPNWSP-DGDEFAYVRYF 292 (297)
T ss_dssp SCCBCT-TSSEEEEEEEC
T ss_pred cceECC-CCCEEEEEEec
Confidence 999999 66666665544
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.91 E-value=4.3e-23 Score=237.07 Aligned_cols=268 Identities=12% Similarity=0.007 Sum_probs=204.0
Q ss_pred CccEEEEEEcCCCCEEEEEeC-CCeEEEEeCCCCceEEEEeccC-CCEEEEEEcCCCCEEEEEeC---CCcEEEEeCCC-
Q 005096 144 RCSINRVLWTPTGRRLITGSQ-SGEFTLWNGQSFNFEMILQAHD-HAIRSMVWSHNDNWMVSGDD---GGAIKYWQNNM- 217 (715)
Q Consensus 144 ~~~I~~l~~spdg~~Latgs~-dg~I~Iwd~~~~~~~~~l~~h~-~~V~~l~~spdg~~L~tgs~---dg~I~iwd~~~- 217 (715)
...|++++|++||++||+++. ||+++||++++++.. .+..+. ..|.+++|++| +++++++. +....||.++.
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~-~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~ 98 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETV-KLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTS 98 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEE-ECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETT
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcE-eeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEecc
Confidence 457999999999999998887 999999998666554 444554 68999999998 77777765 45566665433
Q ss_pred -CceeeeecCCCCCeEEEEEecCCCE-EEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCC----
Q 005096 218 -NNVKANKSAHKESVRDLSFCRTDLK-FCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKD---- 291 (715)
Q Consensus 218 -~~~~~~~~~h~~~I~~l~~spd~~~-Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~D---- 291 (715)
......+.. ...+...+|++|++. +++.+.++.+.+||+++++......... .+++|+|||++|++++.|
T Consensus 99 ~~g~~~~l~~-~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~~~~~~~~ 174 (582)
T 3o4h_A 99 RPGEEQRLEA-VKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG---FGFVSDIRGDLIAGLGFFGGGR 174 (582)
T ss_dssp STTCCEECTT-SCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS---CEEEEEEETTEEEEEEEEETTE
T ss_pred CCCccccccC-CCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC---ceEEECCCCCEEEEEEEcCCCC
Confidence 211123322 223456788888854 3444455556699998887655554333 889999999999988877
Q ss_pred CcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCC--eEEEEECCCCeEEEEeecCCCCeEEEE--------
Q 005096 292 SLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQ--IIKLYDIRAMKELESFRGHRKDVTALA-------- 361 (715)
Q Consensus 292 g~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg--~I~iwDl~t~~~~~~~~~h~~~V~~l~-------- 361 (715)
..|++||+++++.. .+..+...+.+++|+|||++|+++..++ .|++||+.+++.. .+..+...+..++
T Consensus 175 ~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 252 (582)
T 3o4h_A 175 VSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWLG 252 (582)
T ss_dssp EEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEEE
T ss_pred eEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhcccccee
Confidence 78999999988755 6677888899999999999999888888 8999999998887 7777877777777
Q ss_pred EccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCe---EEEEec
Q 005096 362 WHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHT---TKFWCR 427 (715)
Q Consensus 362 ~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~---I~iWdl 427 (715)
|+++ +.++++++.|++++||++ ++. .. ...+.|.+++|+ +++++++++.+.. |.+|+.
T Consensus 253 ~spd-g~~~~~~~~~g~~~l~~~--g~~-~~---~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~ 313 (582)
T 3o4h_A 253 YLPD-GRLAVVARREGRSAVFID--GER-VE---APQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLPS 313 (582)
T ss_dssp ECTT-SCEEEEEEETTEEEEEET--TEE-EC---CCSSEEEEEEEE-TTEEEEEEEETTEEEEEEEETT
T ss_pred EcCC-CcEEEEEEcCCcEEEEEE--CCe-ec---cCCCceEEEEec-CCEEEEEEcCCCCCCeEEEEcC
Confidence 9994 599999999999999999 321 11 345678999999 9999988887754 555554
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.91 E-value=5.8e-22 Score=209.66 Aligned_cols=240 Identities=8% Similarity=0.075 Sum_probs=182.4
Q ss_pred CccEEEEEEcCCCCEEEEEeC-CCeEEEEeCCCCce-EEEEeccCCCEEEEEEcCCCCEEEEEeCCC---cEEEEeCCCC
Q 005096 144 RCSINRVLWTPTGRRLITGSQ-SGEFTLWNGQSFNF-EMILQAHDHAIRSMVWSHNDNWMVSGDDGG---AIKYWQNNMN 218 (715)
Q Consensus 144 ~~~I~~l~~spdg~~Latgs~-dg~I~Iwd~~~~~~-~~~l~~h~~~V~~l~~spdg~~L~tgs~dg---~I~iwd~~~~ 218 (715)
...+ +++|++|+++|++++. ++.|++||..+++. ...+..+...+.+++|++++++|+++..++ .|.+||++++
T Consensus 40 ~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~ 118 (331)
T 3u4y_A 40 YDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKN 118 (331)
T ss_dssp CCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTT
T ss_pred CCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCC
Confidence 4455 9999999997777666 88999999999988 777777766666699999999999655553 8999999998
Q ss_pred ceeeeecCCCCCeEEEEEecCCCEEEEE-ECCCc-EEEEECCCCeeE----EEecccCCceEEEEEcCCCCEEEEEe-CC
Q 005096 219 NVKANKSAHKESVRDLSFCRTDLKFCSC-SDDTT-VKVWDFARCQEE----RSLTGHGWDVKSVDWHPTKSLLVSGG-KD 291 (715)
Q Consensus 219 ~~~~~~~~h~~~I~~l~~spd~~~Las~-s~Dg~-V~iwdl~~~~~~----~~l~~~~~~I~si~~spdg~~L~sgs-~D 291 (715)
+.+..+.. .....+++|++|+++|+++ ..++. |.+|++.....+ .........+.+++|++++++|++++ .+
T Consensus 119 ~~~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~ 197 (331)
T 3u4y_A 119 KFISTIPI-PYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIG 197 (331)
T ss_dssp EEEEEEEC-CTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTT
T ss_pred CeEEEEEC-CCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCC
Confidence 88776654 4557899999999865554 55688 999998754332 12223455689999999999665554 68
Q ss_pred CcEEEEECCCCce---eEEeccCCCceEEEEEcCCCCEEEEEE-CCCeEEEEECCCCeE--EEEeecC----CC---CeE
Q 005096 292 SLVKLWDAKSGRE---LCSFHGHKNMVLCVKWNQNGNWVLTAS-KDQIIKLYDIRAMKE--LESFRGH----RK---DVT 358 (715)
Q Consensus 292 g~I~iwDl~s~~~---~~~~~~~~~~I~sl~~spdg~~Lasgs-~dg~I~iwDl~t~~~--~~~~~~h----~~---~V~ 358 (715)
+.|++||+++++. +..+.. ...+.+++|++|+++|++++ .++.|.+||+.+++. +..+... .. .+.
T Consensus 198 ~~v~v~d~~~~~~~~~~~~~~~-~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (331)
T 3u4y_A 198 NSIGILETQNPENITLLNAVGT-NNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGAN 276 (331)
T ss_dssp TEEEEEECSSTTSCEEEEEEEC-SSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCC
T ss_pred CeEEEEECCCCcccceeeeccC-CCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCccccc
Confidence 8999999999888 766663 46678999999999887665 477899999999887 4444322 22 235
Q ss_pred EEEEccCCCCEE-EEEeCCCcEEEEEcCCC
Q 005096 359 ALAWHPFHEEYF-VSGSLDGSIFHWLVGHE 387 (715)
Q Consensus 359 ~l~~sp~~~~~l-~sgs~DG~I~iwd~~~~ 387 (715)
.++|++ ++++| +++..++.|.+||+...
T Consensus 277 ~~~~sp-dg~~l~v~~~~~~~v~v~d~~~~ 305 (331)
T 3u4y_A 277 QMALNK-TETKLFISANISRELKVFTISGK 305 (331)
T ss_dssp CEEECT-TSSEEEEEETTTTEEEEEETTSC
T ss_pred ceEECC-CCCEEEEecCCCCcEEEEEecCC
Confidence 689999 55555 55556779999999754
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.8e-22 Score=247.96 Aligned_cols=277 Identities=8% Similarity=-0.018 Sum_probs=224.8
Q ss_pred CCccEEEEEEc-CCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCC-CEEEEEEcCCCCEEEEEeCCCcEE-EEeCCCCc
Q 005096 143 NRCSINRVLWT-PTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDH-AIRSMVWSHNDNWMVSGDDGGAIK-YWQNNMNN 219 (715)
Q Consensus 143 H~~~I~~l~~s-pdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~-~V~~l~~spdg~~L~tgs~dg~I~-iwd~~~~~ 219 (715)
|...|.+++|+ |||++|++++ ++.|++|++.+++.. .+..|.. .+.+++|+ |++.|++++.++.|. +|++.+++
T Consensus 294 ~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~ 370 (1045)
T 1k32_A 294 SIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVL-KVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGK 370 (1045)
T ss_dssp ECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEE-ECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCC
T ss_pred cccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceE-EccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCC
Confidence 44579999999 9999999888 789999999887654 4666777 89999999 999999988888888 99998876
Q ss_pred eeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCC-------
Q 005096 220 VKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDS------- 292 (715)
Q Consensus 220 ~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg------- 292 (715)
..... .+...+.+++|++|+++|++++.++.|++||+.+++....+..|...+.+++|+||+++|++++.++
T Consensus 371 ~~~l~-~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~ 449 (1045)
T 1k32_A 371 AEKFE-ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGY 449 (1045)
T ss_dssp EEECC-CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSC
T ss_pred ceEec-CCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCC
Confidence 65444 7778999999999999999999999999999999888887778888999999999999998887654
Q ss_pred ---cEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeE-----------------------
Q 005096 293 ---LVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKE----------------------- 346 (715)
Q Consensus 293 ---~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~----------------------- 346 (715)
.|++||+.+++ +..+..+...+.+++|++||++|++++.++...+|+......
T Consensus 450 ~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (1045)
T 1k32_A 450 VMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKL 528 (1045)
T ss_dssp CEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGC
T ss_pred CCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchhccccccccCceeEEEEeCCCCCCcccc
Confidence 89999999877 667777888899999999999999999887777776433211
Q ss_pred --------------------EEEeecCCCCeEEEEEccCCCCEEEE-------------EeCCCcEEEEEcCCCCceEEE
Q 005096 347 --------------------LESFRGHRKDVTALAWHPFHEEYFVS-------------GSLDGSIFHWLVGHETPQVEI 393 (715)
Q Consensus 347 --------------------~~~~~~h~~~V~~l~~sp~~~~~l~s-------------gs~DG~I~iwd~~~~~~~~~~ 393 (715)
+..+..+...+..+++++ ++.++++ ...+..|++||+.+.... .
T Consensus 529 ~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~-dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~--~ 605 (1045)
T 1k32_A 529 VPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLE-SSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVT--E 605 (1045)
T ss_dssp CCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECS-SEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEE--E
T ss_pred CcCccccccccccccCHhHceEEcCCCCCChhheEEcC-CCeEEEEecccCcccccccccCCCceEEEEECCCCcEE--E
Confidence 122333556788999999 6666664 123446788888776532 2
Q ss_pred eeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCCCC
Q 005096 394 HNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPG 431 (715)
Q Consensus 394 ~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~ 431 (715)
+. ..+.+++|++||++|++++.| .|++||++...
T Consensus 606 l~---~~v~~~~~S~DG~~l~~~~~~-~i~~~d~~~~~ 639 (1045)
T 1k32_A 606 VK---NNLTDLRLSADRKTVMVRKDD-GKIYTFPLEKP 639 (1045)
T ss_dssp EE---EEEEEEEECTTSCEEEEEETT-SCEEEEESSCT
T ss_pred ee---cCcceEEECCCCCEEEEEcCC-cEEEEeCccCc
Confidence 22 468899999999999999866 89999997655
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.2e-22 Score=249.67 Aligned_cols=279 Identities=11% Similarity=0.045 Sum_probs=228.1
Q ss_pred ecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCC-CceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 005096 139 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQS-FNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNM 217 (715)
Q Consensus 139 ~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~-~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~ 217 (715)
.+.+|...|.+++|+++ +++++++.|+.+.||++.. +.....+..|. .+.+++|++|+++|+++ .++.|++|++..
T Consensus 198 ~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~SpDG~~la~~-~~~~i~~~d~~~ 274 (1045)
T 1k32_A 198 KIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPRHLNTDGRRILFS-KGGSIYIFNPDT 274 (1045)
T ss_dssp EEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCEEEEEESSSCEEEE-ETTEEEEECTTT
T ss_pred ECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCC-CcceeeEcCCCCEEEEE-eCCEEEEecCCc
Confidence 45789999999999988 6667788889999997653 33455555555 45677999999998887 489999999955
Q ss_pred CceeeeecC-----------CCCCeEEEEEe-cCCCEEEEEECCCcEEEEECCCCeeEEEecccCC-ceEEEEEcCCCCE
Q 005096 218 NNVKANKSA-----------HKESVRDLSFC-RTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGW-DVKSVDWHPTKSL 284 (715)
Q Consensus 218 ~~~~~~~~~-----------h~~~I~~l~~s-pd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~-~I~si~~spdg~~ 284 (715)
..+. .+.. +...+.+++|+ +|+++|++++ ++.|++||+.+++.. .+..+.. .+.+++|+ |++.
T Consensus 275 ~~l~-~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~s-dg~~ 350 (1045)
T 1k32_A 275 EKIE-KIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVL-KVPEPLRIRYVRRGGD-TKVA 350 (1045)
T ss_dssp CCEE-ECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEE-ECSCCSCEEEEEECSS-SEEE
T ss_pred eEee-eeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceE-EccCCCcceEEeeeEc-CCCe
Confidence 4443 4433 23468999999 9999999888 789999999877644 4556666 89999999 9999
Q ss_pred EEEEeCCCcEE-EEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEc
Q 005096 285 LVSGGKDSLVK-LWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWH 363 (715)
Q Consensus 285 L~sgs~Dg~I~-iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~s 363 (715)
|++++.++.|. +||+.+++.. .+..+...+.+++|++||++|++++.++.|++||+.+++....+..|...+.+++|+
T Consensus 351 l~~~s~~~~l~~~~d~~~~~~~-~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~S 429 (1045)
T 1k32_A 351 FIHGTREGDFLGIYDYRTGKAE-KFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTIS 429 (1045)
T ss_dssp EEEEETTEEEEEEEETTTCCEE-ECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEEC
T ss_pred EEEEECCCceEEEEECCCCCce-EecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEEC
Confidence 99999888898 9999876644 444677889999999999999999999999999999999888887899999999999
Q ss_pred cCCCCEEEEEeCCC----------cEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecC
Q 005096 364 PFHEEYFVSGSLDG----------SIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRN 428 (715)
Q Consensus 364 p~~~~~l~sgs~DG----------~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~ 428 (715)
| ++++|++++.++ .|++||+.++. ...+..|...+.+++|++||++|++++.++...+|+..
T Consensus 430 p-DG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~--~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~ 501 (1045)
T 1k32_A 430 D-NSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK--IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRV 501 (1045)
T ss_dssp T-TSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE--EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSS
T ss_pred C-CCCeEEEEecCccccccCCCCCeEEEEECCCCc--EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchh
Confidence 9 778777776543 89999998765 34455677889999999999999999999888888754
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.7e-22 Score=237.17 Aligned_cols=274 Identities=11% Similarity=0.121 Sum_probs=199.3
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceE-EEEeccC-----------------CCEEEEEEcCCCCEEEEEeCCC
Q 005096 147 INRVLWTPTGRRLITGSQSGEFTLWNGQSFNFE-MILQAHD-----------------HAIRSMVWSHNDNWMVSGDDGG 208 (715)
Q Consensus 147 I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~-~~l~~h~-----------------~~V~~l~~spdg~~L~tgs~dg 208 (715)
+..+.|+ |+.+++++.|+ | +||+.+++.+ ..+..+. ..|.+++|++| ++|+.+. ++
T Consensus 28 ~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~~-~~ 101 (706)
T 2z3z_A 28 VVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLFT-QG 101 (706)
T ss_dssp CTTCEEE--TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEEE-TT
T ss_pred CCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEEE-CC
Confidence 4557888 66788888888 8 9999998873 3333332 46999999999 6666554 59
Q ss_pred cEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCC-----CeeEEEecccCCc-----------
Q 005096 209 AIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFAR-----CQEERSLTGHGWD----------- 272 (715)
Q Consensus 209 ~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~-----~~~~~~l~~~~~~----------- 272 (715)
.|++||+.+++.... ..+...+.+++|++|+++|+++ .|+.|++||+.+ ++.......+...
T Consensus 102 ~i~~~d~~~~~~~~l-~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee 179 (706)
T 2z3z_A 102 GLVGFDMLARKVTYL-FDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQRE 179 (706)
T ss_dssp EEEEEETTTTEEEEE-ECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGC
T ss_pred EEEEEECCCCceEEc-cCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhh
Confidence 999999998866544 4456778999999999999985 678999999988 7665544433332
Q ss_pred ---eEEEEEcCCCCEEEEEe---------------------------------CCCcEEEEECCCCceeEEec--cCCCc
Q 005096 273 ---VKSVDWHPTKSLLVSGG---------------------------------KDSLVKLWDAKSGRELCSFH--GHKNM 314 (715)
Q Consensus 273 ---I~si~~spdg~~L~sgs---------------------------------~Dg~I~iwDl~s~~~~~~~~--~~~~~ 314 (715)
+.+++|+|||++|++++ .+..|++||+++++...... .+...
T Consensus 180 ~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~ 259 (706)
T 2z3z_A 180 FGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKF 259 (706)
T ss_dssp TTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCE
T ss_pred cCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCcee
Confidence 48999999999999987 44679999999887654432 45677
Q ss_pred eEEEEEcCCCCEEEEEECCC-----eEEEEECCCCeEEEEee-c-CCC---CeEEEEEcc-CCCCEEEEEeCCCcEEEEE
Q 005096 315 VLCVKWNQNGNWVLTASKDQ-----IIKLYDIRAMKELESFR-G-HRK---DVTALAWHP-FHEEYFVSGSLDGSIFHWL 383 (715)
Q Consensus 315 I~sl~~spdg~~Lasgs~dg-----~I~iwDl~t~~~~~~~~-~-h~~---~V~~l~~sp-~~~~~l~sgs~DG~I~iwd 383 (715)
+.+++|++|+++|++++.++ .|++||+.+++.+..+. . +.. .+.+++|++ .++++|++++.|+.++||+
T Consensus 260 ~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~ 339 (706)
T 2z3z_A 260 LTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYL 339 (706)
T ss_dssp EEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEE
T ss_pred EeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEE
Confidence 99999999999999988775 89999999984333332 2 222 246789998 2455888899999999998
Q ss_pred cCCCCceEEEeeccCCCEEE-EEEcCCCCEEEEEECC-C----eEEEEecC
Q 005096 384 VGHETPQVEIHNVHDNTVWD-LAWHPIGYLLCSGSND-H----TTKFWCRN 428 (715)
Q Consensus 384 ~~~~~~~~~~~~~h~~~V~~-l~~spdg~~L~sgs~D-g----~I~iWdl~ 428 (715)
++........+..+...|.+ ++|++|++.|+.++.+ + .|..|+++
T Consensus 340 ~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~ 390 (706)
T 2z3z_A 340 YDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIK 390 (706)
T ss_dssp EETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETT
T ss_pred EECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcC
Confidence 87444445555566777876 7999999887766554 3 45555543
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.90 E-value=2e-21 Score=207.49 Aligned_cols=271 Identities=13% Similarity=0.112 Sum_probs=189.3
Q ss_pred EEEEEeC----CCeEEEEeC--CCCceEE-EEeccCCCEEEEEEcCCCCEEEEEeC---CCcEEEEeCCCCce--eeeec
Q 005096 158 RLITGSQ----SGEFTLWNG--QSFNFEM-ILQAHDHAIRSMVWSHNDNWMVSGDD---GGAIKYWQNNMNNV--KANKS 225 (715)
Q Consensus 158 ~Latgs~----dg~I~Iwd~--~~~~~~~-~l~~h~~~V~~l~~spdg~~L~tgs~---dg~I~iwd~~~~~~--~~~~~ 225 (715)
+|++|+. ++.|++|++ ++++... ....+...+..++|++|++ |++++. ++.|++|++.+++. +..+.
T Consensus 4 ~~~vg~y~~~~~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~ 82 (347)
T 3hfq_A 4 RILFGTYTKKTSQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVV 82 (347)
T ss_dssp EEEEEECCSSSCCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEE
T ss_pred EEEEEeccCCCCCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeee
Confidence 3555533 445777654 4555543 3344567788899999999 555443 68999999977653 33334
Q ss_pred CCCCCeEEEEEecCCCEEEEEE-CCCcEEEEECCC-C--eeEEEeccc---------CCceEEEEEcCCCCEEEEEeCCC
Q 005096 226 AHKESVRDLSFCRTDLKFCSCS-DDTTVKVWDFAR-C--QEERSLTGH---------GWDVKSVDWHPTKSLLVSGGKDS 292 (715)
Q Consensus 226 ~h~~~I~~l~~spd~~~Las~s-~Dg~V~iwdl~~-~--~~~~~l~~~---------~~~I~si~~spdg~~L~sgs~Dg 292 (715)
.+...+..++|++|+++|++++ .++.|.+||+.. + +.+..+... ...+.+++|++|++++++...++
T Consensus 83 ~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~ 162 (347)
T 3hfq_A 83 APGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSD 162 (347)
T ss_dssp EESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTT
T ss_pred cCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCC
Confidence 5677889999999999998888 678999999963 2 233333221 22488999999999666666788
Q ss_pred cEEEEECC-CCceeE--Eecc-CCCceEEEEEcCCCCEEEEE-ECCCeEEEEECCC--CeE--EEEeecCC------CCe
Q 005096 293 LVKLWDAK-SGRELC--SFHG-HKNMVLCVKWNQNGNWVLTA-SKDQIIKLYDIRA--MKE--LESFRGHR------KDV 357 (715)
Q Consensus 293 ~I~iwDl~-s~~~~~--~~~~-~~~~I~sl~~spdg~~Lasg-s~dg~I~iwDl~t--~~~--~~~~~~h~------~~V 357 (715)
.|++||++ +++... .+.. ....+..++|++||++|+++ ..++.|++||++. ++. +..+.... ..+
T Consensus 163 ~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 242 (347)
T 3hfq_A 163 KVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGA 242 (347)
T ss_dssp EEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEE
T ss_pred EEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcc
Confidence 99999998 454322 2222 23467889999999977765 5678999999874 543 23333322 358
Q ss_pred EEEEEccCCCCEE-EEEeCCCcEEEEEcCCCCc--eEEEeeccCCCEEEEEEcCCCCEEEEEECC-CeEEEEecCCC
Q 005096 358 TALAWHPFHEEYF-VSGSLDGSIFHWLVGHETP--QVEIHNVHDNTVWDLAWHPIGYLLCSGSND-HTTKFWCRNRP 430 (715)
Q Consensus 358 ~~l~~sp~~~~~l-~sgs~DG~I~iwd~~~~~~--~~~~~~~h~~~V~~l~~spdg~~L~sgs~D-g~I~iWdl~~~ 430 (715)
..++|++ ++++| ++...++.|.+|+++.... .......+...+.+++|++|+++|++++.+ +.|.+|+++..
T Consensus 243 ~~i~~sp-dG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~ 318 (347)
T 3hfq_A 243 AAIRLSH-DGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLT 318 (347)
T ss_dssp EEEEECT-TSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred eeEEECC-CCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCC
Confidence 8999999 56654 6777789999999974322 222333445578999999999988888764 89999988654
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.89 E-value=2.5e-21 Score=204.12 Aligned_cols=241 Identities=9% Similarity=0.035 Sum_probs=189.3
Q ss_pred cEEEEEEcCCCCEEEE-EeCCCeEEEEeCCCCceEEEEeccC-----CCEEEEEEcCCCCEEEEEe------------CC
Q 005096 146 SINRVLWTPTGRRLIT-GSQSGEFTLWNGQSFNFEMILQAHD-----HAIRSMVWSHNDNWMVSGD------------DG 207 (715)
Q Consensus 146 ~I~~l~~spdg~~Lat-gs~dg~I~Iwd~~~~~~~~~l~~h~-----~~V~~l~~spdg~~L~tgs------------~d 207 (715)
.+.+++|++++++|++ +..++.|++||+.+++.+..+.... ..+.+++|++++++|++++ .+
T Consensus 35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~ 114 (337)
T 1pby_B 35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQP 114 (337)
T ss_dssp CCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECC
T ss_pred CccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccC
Confidence 4778999999987654 4557899999999998887766421 2567899999999998886 57
Q ss_pred CcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEE
Q 005096 208 GAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVS 287 (715)
Q Consensus 208 g~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~s 287 (715)
+.|.+||+.+++....+.. ...+.+++|++++++|+++ ++.|++||+.+++.+..+..+.. ...+.|+++++.|++
T Consensus 115 ~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~ 190 (337)
T 1pby_B 115 TRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSW-EAETYAQPDVLAVWN 190 (337)
T ss_dssp CEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTT-TTTTBCCCBCCCCCC
T ss_pred ceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeecccc-CCCceeCCCccEEee
Confidence 9999999998887766654 4568889999999988887 68899999999988777764431 123478898886655
Q ss_pred EeCCC------------------------cEEEEECCCCcee-EEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECC
Q 005096 288 GGKDS------------------------LVKLWDAKSGREL-CSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIR 342 (715)
Q Consensus 288 gs~Dg------------------------~I~iwDl~s~~~~-~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~ 342 (715)
.+.++ .|.+||+++++.. ..+..+...+.+++|++|+++|+++ ++.|++||++
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~ 268 (337)
T 1pby_B 191 QHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLE 268 (337)
T ss_dssp CCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETT
T ss_pred eccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECC
Confidence 44332 4689999988764 2234455678899999999999988 7999999999
Q ss_pred CCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEe
Q 005096 343 AMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIH 394 (715)
Q Consensus 343 t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~ 394 (715)
+++.+..+.. ...+.+++|++ ++++|++++.++.|++||+.+.+....+.
T Consensus 269 ~~~~~~~~~~-~~~~~~~~~s~-dg~~l~~~~~~~~i~v~d~~~~~~~~~~~ 318 (337)
T 1pby_B 269 KNASIKRVPL-PHSYYSVNVST-DGSTVWLGGALGDLAAYDAETLEKKGQVD 318 (337)
T ss_dssp TTEEEEEEEC-SSCCCEEEECT-TSCEEEEESBSSEEEEEETTTCCEEEEEE
T ss_pred CCcCcceecC-CCceeeEEECC-CCCEEEEEcCCCcEEEEECcCCcEEEEEE
Confidence 9998887764 35688999999 67777778889999999998876554443
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.2e-20 Score=201.30 Aligned_cols=242 Identities=9% Similarity=0.095 Sum_probs=175.2
Q ss_pred CCccEEEEEEcCCCCEEEEEeC---CCeEEEEeCCCCc--eEEEEeccCCCEEEEEEcCCCCEEEEEe-CCCcEEEEeCC
Q 005096 143 NRCSINRVLWTPTGRRLITGSQ---SGEFTLWNGQSFN--FEMILQAHDHAIRSMVWSHNDNWMVSGD-DGGAIKYWQNN 216 (715)
Q Consensus 143 H~~~I~~l~~spdg~~Latgs~---dg~I~Iwd~~~~~--~~~~l~~h~~~V~~l~~spdg~~L~tgs-~dg~I~iwd~~ 216 (715)
+...+..++|++||+ |++++. ++.|++||+.+++ .+..+..+...+..++|++|+++|++++ .++.|.+|++.
T Consensus 38 ~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~ 116 (347)
T 3hfq_A 38 ATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIA 116 (347)
T ss_dssp ECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred ccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeC
Confidence 445677899999999 665554 6899999997765 3444455777889999999999888877 67999999986
Q ss_pred C-Cc--eeeeecC---------CCCCeEEEEEecCCCEEEEEECCCcEEEEECC-CCeeEE--Eecc-cCCceEEEEEcC
Q 005096 217 M-NN--VKANKSA---------HKESVRDLSFCRTDLKFCSCSDDTTVKVWDFA-RCQEER--SLTG-HGWDVKSVDWHP 280 (715)
Q Consensus 217 ~-~~--~~~~~~~---------h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~-~~~~~~--~l~~-~~~~I~si~~sp 280 (715)
. +. .+..+.. ....+.+++|++|++++++...++.|++||+. +++... .+.. ....+..++|++
T Consensus 117 ~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~sp 196 (347)
T 3hfq_A 117 ADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSP 196 (347)
T ss_dssp TTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECT
T ss_pred CCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECC
Confidence 3 22 2222211 12348899999999966666668899999998 443322 2222 234678899999
Q ss_pred CCCEEEE-EeCCCcEEEEECCC--Cce--eEEeccCC------CceEEEEEcCCCCEEEE-EECCCeEEEEECC---CCe
Q 005096 281 TKSLLVS-GGKDSLVKLWDAKS--GRE--LCSFHGHK------NMVLCVKWNQNGNWVLT-ASKDQIIKLYDIR---AMK 345 (715)
Q Consensus 281 dg~~L~s-gs~Dg~I~iwDl~s--~~~--~~~~~~~~------~~I~sl~~spdg~~Las-gs~dg~I~iwDl~---t~~ 345 (715)
|+++|++ ...++.|++||++. ++. +..+.... ..+..++|++||++|++ ...++.|.+||+. +.+
T Consensus 197 dg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~ 276 (347)
T 3hfq_A 197 DGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLT 276 (347)
T ss_dssp TSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEE
T ss_pred CCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEE
Confidence 9996665 45678999999874 432 22222222 45889999999998854 5568999999997 335
Q ss_pred EEEEeecCCCCeEEEEEccCCCCEEEEEeC-CCcEEEEEcCC
Q 005096 346 ELESFRGHRKDVTALAWHPFHEEYFVSGSL-DGSIFHWLVGH 386 (715)
Q Consensus 346 ~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~-DG~I~iwd~~~ 386 (715)
.+..+..+...+..++|++ ++++|++++. ++.|.+|+++.
T Consensus 277 ~~~~~~~~~~~~~~~~~sp-dg~~l~v~~~~~~~v~v~~~d~ 317 (347)
T 3hfq_A 277 LIQQISTEGDFPRDFDLDP-TEAFVVVVNQNTDNATLYARDL 317 (347)
T ss_dssp EEEEEECSSSCCCEEEECT-TSSEEEEEETTTTEEEEEEECT
T ss_pred EeEEEecCCCCcCeEEECC-CCCEEEEEEcCCCcEEEEEEeC
Confidence 6666776677889999999 6776666664 58999997654
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=3.9e-22 Score=234.75 Aligned_cols=275 Identities=10% Similarity=0.055 Sum_probs=202.5
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCC---CEEEEEEcCCCCEEEEEeC---------CCcEEEEeCC
Q 005096 149 RVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDH---AIRSMVWSHNDNWMVSGDD---------GGAIKYWQNN 216 (715)
Q Consensus 149 ~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~---~V~~l~~spdg~~L~tgs~---------dg~I~iwd~~ 216 (715)
+++|++||+ +++.+.|++|++||+.+++....+..+.. .|.+++||+||++|++++. ++.|++||++
T Consensus 20 ~~~~s~dg~-~~~~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~ 98 (719)
T 1z68_A 20 FPNWISGQE-YLHQSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS 98 (719)
T ss_dssp CCEESSSSE-EEEECTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred ccEECCCCe-EEEEcCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC
Confidence 678999995 45455799999999999998877776644 4899999999999998876 6899999999
Q ss_pred CCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEe-cccCCce-----------------EEEEE
Q 005096 217 MNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSL-TGHGWDV-----------------KSVDW 278 (715)
Q Consensus 217 ~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l-~~~~~~I-----------------~si~~ 278 (715)
+++.+... .....+..++|+|||+.|+++. |+.|++||+.+++..... .++...| .+++|
T Consensus 99 ~g~~~~~~-~l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~w 176 (719)
T 1z68_A 99 NGEFVRGN-ELPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWW 176 (719)
T ss_dssp TTEECCSS-CCCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEE
T ss_pred CCccccce-ecCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEE
Confidence 88763111 1135688999999999999886 779999999887665432 2222212 58999
Q ss_pred cCCCCEEEEEeCCC----------------------------------cEEEEECCCCcee--EE------eccCCCceE
Q 005096 279 HPTKSLLVSGGKDS----------------------------------LVKLWDAKSGREL--CS------FHGHKNMVL 316 (715)
Q Consensus 279 spdg~~L~sgs~Dg----------------------------------~I~iwDl~s~~~~--~~------~~~~~~~I~ 316 (715)
+|||++|++++.|. .|++||+.+++.+ .. +..+...+.
T Consensus 177 SPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (719)
T 1z68_A 177 SPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFS 256 (719)
T ss_dssp CTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEE
T ss_pred CCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEE
Confidence 99999999987652 7889999987653 12 235777899
Q ss_pred EEEEcCCCCEEEEEECC----CeEEEEE----CCCCeEEEEe----ecCCCCeE-----EEEEccCCCCEEE-EEeCCCc
Q 005096 317 CVKWNQNGNWVLTASKD----QIIKLYD----IRAMKELESF----RGHRKDVT-----ALAWHPFHEEYFV-SGSLDGS 378 (715)
Q Consensus 317 sl~~spdg~~Lasgs~d----g~I~iwD----l~t~~~~~~~----~~h~~~V~-----~l~~sp~~~~~l~-sgs~DG~ 378 (715)
+++|++|++++++.... ..|++|| +.+++....+ ..+...+. .++|++++..+++ +...+|.
T Consensus 257 ~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~ 336 (719)
T 1z68_A 257 WLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGY 336 (719)
T ss_dssp EEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSC
T ss_pred EeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCc
Confidence 99999998777664432 2488999 8887766555 46666676 8899995444444 4556664
Q ss_pred --EEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECC-----CeEEEEecCC
Q 005096 379 --IFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSND-----HTTKFWCRNR 429 (715)
Q Consensus 379 --I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~D-----g~I~iWdl~~ 429 (715)
|++||+..+. ...+..+...|..+.++ +++.|+..+.+ +.++||.++.
T Consensus 337 ~~l~~~~~~~~~--~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~ 391 (719)
T 1z68_A 337 KHIHYIKDTVEN--AIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISI 391 (719)
T ss_dssp EEEEEESSCSTT--CEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEEC
T ss_pred eEEEEEECCCCc--eEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeC
Confidence 5666665544 23444455668888777 88777777665 8899999876
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.89 E-value=2.2e-20 Score=200.66 Aligned_cols=271 Identities=8% Similarity=0.093 Sum_probs=188.8
Q ss_pred CEEEEEeC----CCeEEEEeC--CCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCC----CcEEEEeCCC--Cce--ee
Q 005096 157 RRLITGSQ----SGEFTLWNG--QSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDG----GAIKYWQNNM--NNV--KA 222 (715)
Q Consensus 157 ~~Latgs~----dg~I~Iwd~--~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~d----g~I~iwd~~~--~~~--~~ 222 (715)
.++++|+. ++.|++|++ ++++.......+...+..++|++|+++|++++.+ +.|.+|+++. ++. +.
T Consensus 14 ~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~ 93 (361)
T 3scy_A 14 LTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLN 93 (361)
T ss_dssp EEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEE
T ss_pred eEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEee
Confidence 35566643 567888865 4555544333367778899999999999988875 7999998765 433 22
Q ss_pred eecCCCCCeEEEEEecCCCEEEEEE-CCCcEEEEECCCCeeEEEe------cc--------cCCceEEEEEcCCCCEEEE
Q 005096 223 NKSAHKESVRDLSFCRTDLKFCSCS-DDTTVKVWDFARCQEERSL------TG--------HGWDVKSVDWHPTKSLLVS 287 (715)
Q Consensus 223 ~~~~h~~~I~~l~~spd~~~Las~s-~Dg~V~iwdl~~~~~~~~l------~~--------~~~~I~si~~spdg~~L~s 287 (715)
....+......+++ ++++|++++ .++.|.+|++.....+..+ .+ +...+.+++|+||+++|++
T Consensus 94 ~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~ 171 (361)
T 3scy_A 94 TQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLA 171 (361)
T ss_dssp EEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEE
T ss_pred EeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEE
Confidence 33335566777887 888877776 5789999999754332211 11 1223578999999997766
Q ss_pred Ee-CCCcEEEEECCCCce------e-------EEeccCCCceEEEEEcCCCCEEEEEE-CCCeEEEEECCCCeE--EEEe
Q 005096 288 GG-KDSLVKLWDAKSGRE------L-------CSFHGHKNMVLCVKWNQNGNWVLTAS-KDQIIKLYDIRAMKE--LESF 350 (715)
Q Consensus 288 gs-~Dg~I~iwDl~s~~~------~-------~~~~~~~~~I~sl~~spdg~~Lasgs-~dg~I~iwDl~t~~~--~~~~ 350 (715)
++ .++.|++|+++.... + .........+.+++|++|+++|++++ .++.|.+||+++++. +..+
T Consensus 172 ~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~ 251 (361)
T 3scy_A 172 DDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTV 251 (361)
T ss_dssp EETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEE
T ss_pred EeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEE
Confidence 55 478999998875431 1 11223455688999999999888877 689999999987754 3333
Q ss_pred e---cCCCCeEEEEEccCCCCEEEEEeC--CCcEEEEEcCC--CCc-eEEEeeccCCCEEEEEEcCCCCEEEEEE-CCCe
Q 005096 351 R---GHRKDVTALAWHPFHEEYFVSGSL--DGSIFHWLVGH--ETP-QVEIHNVHDNTVWDLAWHPIGYLLCSGS-NDHT 421 (715)
Q Consensus 351 ~---~h~~~V~~l~~sp~~~~~l~sgs~--DG~I~iwd~~~--~~~-~~~~~~~h~~~V~~l~~spdg~~L~sgs-~Dg~ 421 (715)
. .+......++|++ ++++|++++. ++.|.+|+++. +.. ....... ...+.+++|++||++|++++ .++.
T Consensus 252 ~~~~~~~~~~~~i~~sp-dg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~ 329 (361)
T 3scy_A 252 AADTVNAQGSGDIHLSP-DGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNV 329 (361)
T ss_dssp ESCSSCCCCEEEEEECT-TSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTE
T ss_pred ecCCCCCCCcccEEECC-CCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCC
Confidence 2 2335578999999 6776655554 58999999963 221 1222222 45788999999999888887 6799
Q ss_pred EEEEecCCCC
Q 005096 422 TKFWCRNRPG 431 (715)
Q Consensus 422 I~iWdl~~~~ 431 (715)
|.+|+++...
T Consensus 330 v~v~~~d~~~ 339 (361)
T 3scy_A 330 IQIFERDQAT 339 (361)
T ss_dssp EEEEEECTTT
T ss_pred EEEEEEECCC
Confidence 9999886543
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.89 E-value=3.8e-21 Score=204.03 Aligned_cols=274 Identities=10% Similarity=0.013 Sum_probs=193.7
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccC-CCEEEEEEcCCCCEEE-EEeCCCcEEEEeCCCCceeeeecC
Q 005096 149 RVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHD-HAIRSMVWSHNDNWMV-SGDDGGAIKYWQNNMNNVKANKSA 226 (715)
Q Consensus 149 ~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~-~~V~~l~~spdg~~L~-tgs~dg~I~iwd~~~~~~~~~~~~ 226 (715)
.++++++++++++++.++.|++||+.+++.+..+..+. ..+..++|++++++++ ++..++.|.+||+.+++....+..
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~ 83 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL 83 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEc
Confidence 45678888899999999999999999999888877544 2578999999998665 555789999999999887766543
Q ss_pred C------CCCeEEEEEecCCCEEEEEECC------------CcEEEEECCCCee---EEEecccCCceEEEEEcCCCCEE
Q 005096 227 H------KESVRDLSFCRTDLKFCSCSDD------------TTVKVWDFARCQE---ERSLTGHGWDVKSVDWHPTKSLL 285 (715)
Q Consensus 227 h------~~~I~~l~~spd~~~Las~s~D------------g~V~iwdl~~~~~---~~~l~~~~~~I~si~~spdg~~L 285 (715)
. ...+.+++|++|+++|++++.+ +.|.+||+.+++. +..+. +...+.+++|++|++ |
T Consensus 84 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~-l 161 (349)
T 1jmx_B 84 SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDGS-L 161 (349)
T ss_dssp CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTSC-E
T ss_pred ccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCcccceeECCCCc-E
Confidence 2 2347889999999999998865 8999999987433 33333 334688999999999 5
Q ss_pred EEEeCCCcEEEEECCCCceeEEeccCCC------------------------ceEEEEEcCCCCEEEEEE-CCCeEEEEE
Q 005096 286 VSGGKDSLVKLWDAKSGRELCSFHGHKN------------------------MVLCVKWNQNGNWVLTAS-KDQIIKLYD 340 (715)
Q Consensus 286 ~sgs~Dg~I~iwDl~s~~~~~~~~~~~~------------------------~I~sl~~spdg~~Lasgs-~dg~I~iwD 340 (715)
++++ +.|++||+++++.+..+..... ...++++++++....... ....+..+|
T Consensus 162 ~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 239 (349)
T 1jmx_B 162 YVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVD 239 (349)
T ss_dssp EEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEE
T ss_pred EEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEe
Confidence 5554 3499999999988777653320 344566665542211100 011122245
Q ss_pred CCCCeE-EEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECC
Q 005096 341 IRAMKE-LESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSND 419 (715)
Q Consensus 341 l~t~~~-~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~D 419 (715)
+.+++. +..+..+...+.+++|++.++++|+++ ++.|.+||+.+.+....+.. ...+.+++|++++++|++++.+
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~~~~~~ 315 (349)
T 1jmx_B 240 LKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANL--DHTYYCVAFDKKGDKLYLGGTF 315 (349)
T ss_dssp TTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEEC--SSCCCEEEECSSSSCEEEESBS
T ss_pred ccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcC--CCCccceEECCCCCEEEEecCC
Confidence 444432 122233566788999998345566666 88999999988765444432 3457899999999888888889
Q ss_pred CeEEEEecCCC
Q 005096 420 HTTKFWCRNRP 430 (715)
Q Consensus 420 g~I~iWdl~~~ 430 (715)
+.|++||++..
T Consensus 316 ~~v~v~d~~~~ 326 (349)
T 1jmx_B 316 NDLAVFNPDTL 326 (349)
T ss_dssp SEEEEEETTTT
T ss_pred CeEEEEecccc
Confidence 99999998653
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.2e-20 Score=200.78 Aligned_cols=241 Identities=10% Similarity=0.055 Sum_probs=193.2
Q ss_pred CCCEEEEEEcCCCCEEEEEeC-------CCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEE-ECCCcEEEEEC
Q 005096 186 DHAIRSMVWSHNDNWMVSGDD-------GGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSC-SDDTTVKVWDF 257 (715)
Q Consensus 186 ~~~V~~l~~spdg~~L~tgs~-------dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~-s~Dg~V~iwdl 257 (715)
...+..++|++++++|++++. ++.|.+||..+++.+..+.. ...+..++|++++++++++ ..++.|.+||+
T Consensus 40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~ 118 (353)
T 3vgz_A 40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN-DLKPFGATINNTTQTLWFGNTVNSAVTAIDA 118 (353)
T ss_dssp ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE-SSCCCSEEEETTTTEEEEEETTTTEEEEEET
T ss_pred ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec-CCCcceEEECCCCCEEEEEecCCCEEEEEeC
Confidence 456889999999999887774 56899999999887777654 3457889999999966555 45799999999
Q ss_pred CCCeeEEEecccCC---------ceEEEEEcCCCCEEEEEe--CCCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCE
Q 005096 258 ARCQEERSLTGHGW---------DVKSVDWHPTKSLLVSGG--KDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNW 326 (715)
Q Consensus 258 ~~~~~~~~l~~~~~---------~I~si~~spdg~~L~sgs--~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~ 326 (715)
++++.+..+..+.. .+.+++|++++++|++++ .++.|.+||+++++.+..+..+...+.+++|++++++
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~ 198 (353)
T 3vgz_A 119 KTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKR 198 (353)
T ss_dssp TTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTE
T ss_pred CCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCE
Confidence 99988877765432 278999999999877776 4788999999999988888756666889999999999
Q ss_pred EEEEECCCeEEEEECCCCeEEEEeec----CCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEE
Q 005096 327 VLTASKDQIIKLYDIRAMKELESFRG----HRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVW 402 (715)
Q Consensus 327 Lasgs~dg~I~iwDl~t~~~~~~~~~----h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~ 402 (715)
|++++.++.|.+||+.+++.+..+.. +...+.+++|++++..++++...++.|.+||..+.+....+.... ..
T Consensus 199 l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~---~~ 275 (353)
T 3vgz_A 199 LYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE---SL 275 (353)
T ss_dssp EEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS---CC
T ss_pred EEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC---Cc
Confidence 99999999999999999999888765 455688999999444445555556999999998877655554322 25
Q ss_pred EEEEcCCCCEEEEEE-CCCeEEEEecCCC
Q 005096 403 DLAWHPIGYLLCSGS-NDHTTKFWCRNRP 430 (715)
Q Consensus 403 ~l~~spdg~~L~sgs-~Dg~I~iWdl~~~ 430 (715)
+++|++++++|++++ .++.|.+||++..
T Consensus 276 ~~~~s~dg~~l~v~~~~~~~v~~~d~~~~ 304 (353)
T 3vgz_A 276 AVLFNPARNEAYVTHRQAGKVSVIDAKSY 304 (353)
T ss_dssp CEEEETTTTEEEEEETTTTEEEEEETTTT
T ss_pred eEEECCCCCEEEEEECCCCeEEEEECCCC
Confidence 799999998666555 6999999998653
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.89 E-value=3.7e-20 Score=198.87 Aligned_cols=261 Identities=6% Similarity=0.030 Sum_probs=184.9
Q ss_pred CCccEEEEEEcCCCCEEEEEeCC----CeEEEEeCCC--Cce--EEEEeccCCCEEEEEEcCCCCEEEEEe-CCCcEEEE
Q 005096 143 NRCSINRVLWTPTGRRLITGSQS----GEFTLWNGQS--FNF--EMILQAHDHAIRSMVWSHNDNWMVSGD-DGGAIKYW 213 (715)
Q Consensus 143 H~~~I~~l~~spdg~~Latgs~d----g~I~Iwd~~~--~~~--~~~l~~h~~~V~~l~~spdg~~L~tgs-~dg~I~iw 213 (715)
+...+..++|++||++|++++.+ +.|.+|+++. ++. +.....+......+++ ++++|++++ .++.|.+|
T Consensus 48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~ 125 (361)
T 3scy_A 48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVF 125 (361)
T ss_dssp ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEE
T ss_pred cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEE
Confidence 56677889999999999999886 7999998765 433 3333445567888888 788777665 57899999
Q ss_pred eCCCCceeeee------c--------CCCCCeEEEEEecCCCEEEEEEC-CCcEEEEECCCCee-------------EEE
Q 005096 214 QNNMNNVKANK------S--------AHKESVRDLSFCRTDLKFCSCSD-DTTVKVWDFARCQE-------------ERS 265 (715)
Q Consensus 214 d~~~~~~~~~~------~--------~h~~~I~~l~~spd~~~Las~s~-Dg~V~iwdl~~~~~-------------~~~ 265 (715)
++.....+..+ . .+...+.+++|++|+++|++++. ++.|++|+++.... ...
T Consensus 126 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~ 205 (361)
T 3scy_A 126 PIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAF 205 (361)
T ss_dssp EBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEE
T ss_pred EeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccce
Confidence 98754322211 1 11234588999999997766654 78999999865431 122
Q ss_pred ecccCCceEEEEEcCCCCEEEEEe-CCCcEEEEECCCCce--eEEec---cCCCceEEEEEcCCCCEEEEEECC--CeEE
Q 005096 266 LTGHGWDVKSVDWHPTKSLLVSGG-KDSLVKLWDAKSGRE--LCSFH---GHKNMVLCVKWNQNGNWVLTASKD--QIIK 337 (715)
Q Consensus 266 l~~~~~~I~si~~spdg~~L~sgs-~Dg~I~iwDl~s~~~--~~~~~---~~~~~I~sl~~spdg~~Lasgs~d--g~I~ 337 (715)
.......+..++|++|+++|++++ .++.|.+||+++++. +..+. .+.....+++|++|+++|++++.+ +.|.
T Consensus 206 ~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~ 285 (361)
T 3scy_A 206 KVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVA 285 (361)
T ss_dssp ECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEE
T ss_pred ecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEE
Confidence 233456688999999999887777 689999999987654 22222 233457899999999999877765 8999
Q ss_pred EEECC--CCe--EEEEeecCCCCeEEEEEccCCCCEEEEEe-CCCcEEEEEcCCCCceEEEe--eccCCCEEEEEEc
Q 005096 338 LYDIR--AMK--ELESFRGHRKDVTALAWHPFHEEYFVSGS-LDGSIFHWLVGHETPQVEIH--NVHDNTVWDLAWH 407 (715)
Q Consensus 338 iwDl~--t~~--~~~~~~~h~~~V~~l~~sp~~~~~l~sgs-~DG~I~iwd~~~~~~~~~~~--~~h~~~V~~l~~s 407 (715)
||++. +++ .+..+.. ...+.+++|++ ++++|++++ .++.|.+|+++......... ..+...+.||.|.
T Consensus 286 v~~~~~~~g~~~~~~~~~~-g~~~~~~~~sp-dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 286 IFKVDETNGTLTKVGYQLT-GIHPRNFIITP-NGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDKPVCLKFV 360 (361)
T ss_dssp EEEECTTTCCEEEEEEEEC-SSCCCEEEECT-TSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSSEEEEEEE
T ss_pred EEEEcCCCCcEEEeeEecC-CCCCceEEECC-CCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCCCeEEEEc
Confidence 99996 344 4555554 56788999999 677666666 67899998776433322322 2345678899886
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.89 E-value=1.7e-21 Score=216.09 Aligned_cols=199 Identities=15% Similarity=0.152 Sum_probs=158.8
Q ss_pred CccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC----------ceEE-----EEeccCCCEEEEEEcCCCCEEE----EE
Q 005096 144 RCSINRVLWTPTGRRLITGSQSGEFTLWNGQSF----------NFEM-----ILQAHDHAIRSMVWSHNDNWMV----SG 204 (715)
Q Consensus 144 ~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~----------~~~~-----~l~~h~~~V~~l~~spdg~~L~----tg 204 (715)
...++.+++++++.+|++++.|+ |+||+..+. ..+. ....+...|++++|++++++|+ ++
T Consensus 36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sg 114 (434)
T 2oit_A 36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSS 114 (434)
T ss_dssp CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEET
T ss_pred CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEecc
Confidence 34578899999999999999988 888863211 0111 1123566799999999999999 78
Q ss_pred eCCCcEEEEeCCCC--------c---eeeeecCCCCCeEEEEEecC-CCEEEEEECCCcEEEEECCCCeeEEEecccCCc
Q 005096 205 DDGGAIKYWQNNMN--------N---VKANKSAHKESVRDLSFCRT-DLKFCSCSDDTTVKVWDFARCQEERSLTGHGWD 272 (715)
Q Consensus 205 s~dg~I~iwd~~~~--------~---~~~~~~~h~~~I~~l~~spd-~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~ 272 (715)
+.|+.|+|||+.+. + ....+..|...|.+++|+++ +++|++++.|++|++||++++..+.....|...
T Consensus 115 s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~ 194 (434)
T 2oit_A 115 EYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVA 194 (434)
T ss_dssp TTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGC
T ss_pred CCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCc
Confidence 88999999997654 1 13455678999999999998 789999999999999999988777777778889
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccC-------CCceEEEEEcCCCCEEEEE-ECCC------eEEE
Q 005096 273 VKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGH-------KNMVLCVKWNQNGNWVLTA-SKDQ------IIKL 338 (715)
Q Consensus 273 I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~-------~~~I~sl~~spdg~~Lasg-s~dg------~I~i 338 (715)
|++++|++++++|++++.|+.|++||++ ++....+..+ ...|.+++|++++.++++. +.|| .+++
T Consensus 195 v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i 273 (434)
T 2oit_A 195 VTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVM 273 (434)
T ss_dssp EEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEE
T ss_pred eeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEE
Confidence 9999999999999999999999999998 5555555433 2379999999988777553 3443 3899
Q ss_pred EECCCC
Q 005096 339 YDIRAM 344 (715)
Q Consensus 339 wDl~t~ 344 (715)
||+++.
T Consensus 274 ~~l~~~ 279 (434)
T 2oit_A 274 ALLPKK 279 (434)
T ss_dssp EECCCT
T ss_pred EEeccC
Confidence 999865
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.8e-21 Score=209.14 Aligned_cols=288 Identities=12% Similarity=0.055 Sum_probs=202.9
Q ss_pred ecCCCCccEEE-----EEEcCCCCEEEEEeC-CC--eEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcE
Q 005096 139 SLNKNRCSINR-----VLWTPTGRRLITGSQ-SG--EFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAI 210 (715)
Q Consensus 139 ~l~~H~~~I~~-----l~~spdg~~Latgs~-dg--~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I 210 (715)
.+..|...+.. .+|||||++|++++. ++ .|++||+.+++.......+...+..++|++|+++|++++.++.|
T Consensus 25 ~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l 104 (388)
T 3pe7_A 25 RLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNL 104 (388)
T ss_dssp ECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTTEE
T ss_pred EecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeE
Confidence 34455555555 889999999998887 66 48889999988877776666666678899999999999999999
Q ss_pred EEEeCCCCceeeeecCCCCCeEEEE--EecCCCEEEEEE----------------------CCCcEEEEECCCCeeEEEe
Q 005096 211 KYWQNNMNNVKANKSAHKESVRDLS--FCRTDLKFCSCS----------------------DDTTVKVWDFARCQEERSL 266 (715)
Q Consensus 211 ~iwd~~~~~~~~~~~~h~~~I~~l~--~spd~~~Las~s----------------------~Dg~V~iwdl~~~~~~~~l 266 (715)
++||+.+++.......+...+.... +++++++++... .+..|++||+.+++... +
T Consensus 105 ~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~-l 183 (388)
T 3pe7_A 105 MRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTV-I 183 (388)
T ss_dssp EEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEE-E
T ss_pred EEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEE-e
Confidence 9999999887766666665554444 478998887432 34679999998876544 4
Q ss_pred cccCCceEEEEEcC-CCCEEEEEeCC------CcEEEEECCCCceeEEeccCC--CceEEEEEcCCCCEEEEEEC-CC--
Q 005096 267 TGHGWDVKSVDWHP-TKSLLVSGGKD------SLVKLWDAKSGRELCSFHGHK--NMVLCVKWNQNGNWVLTASK-DQ-- 334 (715)
Q Consensus 267 ~~~~~~I~si~~sp-dg~~L~sgs~D------g~I~iwDl~s~~~~~~~~~~~--~~I~sl~~spdg~~Lasgs~-dg-- 334 (715)
..+...+..++|+| |++.|+.+..+ ..|.++|+.+++. ..+..+. ..+..++|++||+.|+..+. ++
T Consensus 184 ~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~ 262 (388)
T 3pe7_A 184 LQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM-RKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSP 262 (388)
T ss_dssp EEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-EESCCCCTTEEEEEEEECTTSSCEEEEEEETTCC
T ss_pred ecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce-EEeeeCCCCcccccceECCCCCEEEEEecCCCCC
Confidence 44667789999999 99988887753 3788888876543 3444333 35788999999997766443 22
Q ss_pred --eEEEEECCCCeEEE--EeecCCC---CeEEEEEccCCCCEEEEE--------eCCCcEEEEEcCCCCceEEEeeccCC
Q 005096 335 --IIKLYDIRAMKELE--SFRGHRK---DVTALAWHPFHEEYFVSG--------SLDGSIFHWLVGHETPQVEIHNVHDN 399 (715)
Q Consensus 335 --~I~iwDl~t~~~~~--~~~~h~~---~V~~l~~sp~~~~~l~sg--------s~DG~I~iwd~~~~~~~~~~~~~h~~ 399 (715)
.|++||+.+++... .+..+.. ....++|++++..++++. ..+..|++||+.++.. ..+..+..
T Consensus 263 ~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~--~~l~~~~~ 340 (388)
T 3pe7_A 263 DRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ--HRVARHDT 340 (388)
T ss_dssp CEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEE--EEEEECCC
T ss_pred cceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCce--EEeccccC
Confidence 39999999887433 3322100 012236888444444333 4566899999987543 22333444
Q ss_pred -----------CEEEEEEcCCCCEEEEEE-CCCeEEEEecCCC
Q 005096 400 -----------TVWDLAWHPIGYLLCSGS-NDHTTKFWCRNRP 430 (715)
Q Consensus 400 -----------~V~~l~~spdg~~L~sgs-~Dg~I~iWdl~~~ 430 (715)
.+.+++|++||+.|+..+ .+|...||.++..
T Consensus 341 ~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~l~ 383 (388)
T 3pe7_A 341 SWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLATLP 383 (388)
T ss_dssp CCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECC
T ss_pred cccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEECC
Confidence 578899999998887666 5788888887653
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.6e-22 Score=236.29 Aligned_cols=281 Identities=7% Similarity=0.014 Sum_probs=198.7
Q ss_pred cEEEEEEcCCCCEEEEEeC---------CCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 005096 146 SINRVLWTPTGRRLITGSQ---------SGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNN 216 (715)
Q Consensus 146 ~I~~l~~spdg~~Latgs~---------dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~ 216 (715)
.|.+++|||||++|++++. ++.|+|||+++++.+.... ....+.+++|||||++|+++. ++.|++|++.
T Consensus 61 ~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~-l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~ 138 (719)
T 1z68_A 61 NASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNE-LPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRP 138 (719)
T ss_dssp TCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSC-CCSSBCCEEECSSTTCEEEEE-TTEEEEESST
T ss_pred ceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCcccccee-cCcccccceECCCCCEEEEEE-CCeEEEEeCC
Confidence 4789999999999998876 7899999999887621011 135688999999999999885 7899999998
Q ss_pred CCceeeee-cCCCCCe-----------------EEEEEecCCCEEEEEECCC----------------------------
Q 005096 217 MNNVKANK-SAHKESV-----------------RDLSFCRTDLKFCSCSDDT---------------------------- 250 (715)
Q Consensus 217 ~~~~~~~~-~~h~~~I-----------------~~l~~spd~~~Las~s~Dg---------------------------- 250 (715)
+++..... ..+...| .+++|+||+++|++++.|.
T Consensus 139 ~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g 218 (719)
T 1z68_A 139 GDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAG 218 (719)
T ss_dssp TSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTT
T ss_pred CCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCC
Confidence 87765433 2222222 4899999999999987652
Q ss_pred ------cEEEEECCCCeeE--------EEecccCCceEEEEEcCCCCEEEEEeCC----CcEEEEE----CCCCceeEEe
Q 005096 251 ------TVKVWDFARCQEE--------RSLTGHGWDVKSVDWHPTKSLLVSGGKD----SLVKLWD----AKSGRELCSF 308 (715)
Q Consensus 251 ------~V~iwdl~~~~~~--------~~l~~~~~~I~si~~spdg~~L~sgs~D----g~I~iwD----l~s~~~~~~~ 308 (715)
.|++||+.+++.+ ..+..+...+.+++|+||++++++.... ..|.+|| ++++++...+
T Consensus 219 ~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~ 298 (719)
T 1z68_A 219 AKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQ 298 (719)
T ss_dssp SCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGG
T ss_pred CCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEE
Confidence 7889999887642 1233577789999999998777664432 2488899 8777665444
Q ss_pred ----ccCCCceE-----EEEEcCCCCEEEE--EECCC--eEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeC
Q 005096 309 ----HGHKNMVL-----CVKWNQNGNWVLT--ASKDQ--IIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSL 375 (715)
Q Consensus 309 ----~~~~~~I~-----sl~~spdg~~Las--gs~dg--~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~ 375 (715)
..+...+. +++|++||+.|+. ...++ .|.+||+.+++ ...+..+...+..+.++ +++.+++++..
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~~~~~v~~~~~~-d~~~i~~~~~~ 376 (719)
T 1z68_A 299 EHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-AIQITSGKWEAINIFRV-TQDSLFYSSNE 376 (719)
T ss_dssp EEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-CEECSCSSSCEEEEEEE-CSSEEEEEESC
T ss_pred ecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc-eEecccCceEEEEEEEE-eCCEEEEEEec
Confidence 35666666 8899999996654 33455 57778887665 45566666678887777 45555555554
Q ss_pred ----CCcEEEEEcCC--CCceEEEeec----cCCCEEEEEEcCCCCEEEE-EECC--CeEEEEecCCC
Q 005096 376 ----DGSIFHWLVGH--ETPQVEIHNV----HDNTVWDLAWHPIGYLLCS-GSND--HTTKFWCRNRP 430 (715)
Q Consensus 376 ----DG~I~iwd~~~--~~~~~~~~~~----h~~~V~~l~~spdg~~L~s-gs~D--g~I~iWdl~~~ 430 (715)
++.+++|.+.. +......+.. +...+..+.|++|+++|+. ++.+ ..+.+||++..
T Consensus 377 ~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g 444 (719)
T 1z68_A 377 FEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGRTD 444 (719)
T ss_dssp GGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSSSC
T ss_pred CCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECCCC
Confidence 58889998765 2211222221 4567889999999876664 4433 46888987543
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.87 E-value=3e-21 Score=214.08 Aligned_cols=254 Identities=13% Similarity=0.189 Sum_probs=181.7
Q ss_pred CeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC-----------ceee----eecCCCCC
Q 005096 166 GEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN-----------NVKA----NKSAHKES 230 (715)
Q Consensus 166 g~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~-----------~~~~----~~~~h~~~ 230 (715)
+.|++|+.... .....++.+++++++.+|++++.++ |+||+.... .... ....+...
T Consensus 23 ~~vri~~~~~~-------~~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (434)
T 2oit_A 23 KKVRIFDSPEE-------LPKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFP 94 (434)
T ss_dssp CEEECSCCCSS-------CCCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSC
T ss_pred eeEEecCCccc-------cCCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCc
Confidence 46888864321 1344678999999999999999888 888864211 1110 01234567
Q ss_pred eEEEEEecCCCEEE----EEECCCcEEEEECCCC--------e---eEEEecccCCceEEEEEcCC-CCEEEEEeCCCcE
Q 005096 231 VRDLSFCRTDLKFC----SCSDDTTVKVWDFARC--------Q---EERSLTGHGWDVKSVDWHPT-KSLLVSGGKDSLV 294 (715)
Q Consensus 231 I~~l~~spd~~~La----s~s~Dg~V~iwdl~~~--------~---~~~~l~~~~~~I~si~~spd-g~~L~sgs~Dg~I 294 (715)
|.+++|++++++|+ +++.|++|+|||+++. + .+..+.+|...|++++|+|+ +++|++++.|++|
T Consensus 95 v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v 174 (434)
T 2oit_A 95 IHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSI 174 (434)
T ss_dssp EEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCE
T ss_pred ccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeE
Confidence 99999999999999 7788999999998654 1 24556678899999999998 7899999999999
Q ss_pred EEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCC-------CCeEEEEEccCCC
Q 005096 295 KLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHR-------KDVTALAWHPFHE 367 (715)
Q Consensus 295 ~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~-------~~V~~l~~sp~~~ 367 (715)
+|||++++..+.....|...|++++|++++++|++|+.||.|++||++ ++....+..+. ..|.+++|++ +.
T Consensus 175 ~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~-~~ 252 (434)
T 2oit_A 175 AVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIG-TY 252 (434)
T ss_dssp EEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEE-TT
T ss_pred EEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEec-Cc
Confidence 999999987776777788899999999999999999999999999998 56565554432 3799999998 55
Q ss_pred CEEE-EEeCCCc------EEEEEcCCCCc----eEEEee-------ccCCCEEEEEEcCCCCEEEEEE-CCCeEEEEecC
Q 005096 368 EYFV-SGSLDGS------IFHWLVGHETP----QVEIHN-------VHDNTVWDLAWHPIGYLLCSGS-NDHTTKFWCRN 428 (715)
Q Consensus 368 ~~l~-sgs~DG~------I~iwd~~~~~~----~~~~~~-------~h~~~V~~l~~spdg~~L~sgs-~Dg~I~iWdl~ 428 (715)
.+++ +.+.||. +++|++++... ...... ........+.+.++.++|++++ ..+.|.|+...
T Consensus 253 ~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~~ 332 (434)
T 2oit_A 253 VFAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILARQ 332 (434)
T ss_dssp EEEEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEEC
T ss_pred eEEEEEccCCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEEec
Confidence 5554 3445543 89999976531 111111 1122223344446655555544 45557776654
Q ss_pred C
Q 005096 429 R 429 (715)
Q Consensus 429 ~ 429 (715)
.
T Consensus 333 ~ 333 (434)
T 2oit_A 333 S 333 (434)
T ss_dssp T
T ss_pred C
Confidence 3
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.87 E-value=1e-20 Score=220.43 Aligned_cols=287 Identities=9% Similarity=-0.037 Sum_probs=205.0
Q ss_pred ecCCCCccEEEEEEcCCCCEEEEE--eCCCeEEEEeCCCCceEEEEeccCCCEE---------EEEEc--CCCCE-EEEE
Q 005096 139 SLNKNRCSINRVLWTPTGRRLITG--SQSGEFTLWNGQSFNFEMILQAHDHAIR---------SMVWS--HNDNW-MVSG 204 (715)
Q Consensus 139 ~l~~H~~~I~~l~~spdg~~Latg--s~dg~I~Iwd~~~~~~~~~l~~h~~~V~---------~l~~s--pdg~~-L~tg 204 (715)
.+.+|...|.+++|++++-+++.. +.++...||....+...+.+..+...+. .+.|+ ||+++ |+.+
T Consensus 18 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~ 97 (662)
T 3azo_A 18 LVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFT 97 (662)
T ss_dssp HHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEE
T ss_pred HHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEE
Confidence 356788999999999876666666 5578899998655556677777776666 66666 89988 7665
Q ss_pred eC-CCcEEEEeCC--C-CceeeeecC-----CCCCeEEEEEecCCCEEEEEECC----------CcEEEEECCC------
Q 005096 205 DD-GGAIKYWQNN--M-NNVKANKSA-----HKESVRDLSFCRTDLKFCSCSDD----------TTVKVWDFAR------ 259 (715)
Q Consensus 205 s~-dg~I~iwd~~--~-~~~~~~~~~-----h~~~I~~l~~spd~~~Las~s~D----------g~V~iwdl~~------ 259 (715)
+. +..|.+|++. . ++ ...+.. +...+.+++|++|++.|++++.| ..|++||+.+
T Consensus 98 ~~~~~~l~~~~~~~~g~~~-~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 176 (662)
T 3azo_A 98 HFGDQRLYAFEPDAPGGAV-PRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADR 176 (662)
T ss_dssp BTTTCCEEEECTTSTTCCC-CEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCG
T ss_pred ECCCCeEEEEcCCCCCCCC-CEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccC
Confidence 43 5667777765 2 33 333444 56778999999999999998876 5899999987
Q ss_pred CeeEEEec-ccCCceEEEEEcCCCCEEEEEeCC--------CcEEEEECC-CC---ceeEEeccCCCceEEEEEcCCCCE
Q 005096 260 CQEERSLT-GHGWDVKSVDWHPTKSLLVSGGKD--------SLVKLWDAK-SG---RELCSFHGHKNMVLCVKWNQNGNW 326 (715)
Q Consensus 260 ~~~~~~l~-~~~~~I~si~~spdg~~L~sgs~D--------g~I~iwDl~-s~---~~~~~~~~~~~~I~sl~~spdg~~ 326 (715)
++. ..+. .+...+..++|+|||++|++++.+ ..|++||++ ++ +.......+...+..++|++||++
T Consensus 177 ~~~-~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l 255 (662)
T 3azo_A 177 SAV-RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSL 255 (662)
T ss_dssp GGS-EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCE
T ss_pred Cce-eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeE
Confidence 443 4454 556778899999999999887755 379999999 56 333344445678999999999997
Q ss_pred EEEEECCC--eEEEEECCCCeEEEEeecCCCC--------eEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeec
Q 005096 327 VLTASKDQ--IIKLYDIRAMKELESFRGHRKD--------VTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNV 396 (715)
Q Consensus 327 Lasgs~dg--~I~iwDl~t~~~~~~~~~h~~~--------V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~ 396 (715)
+++++.++ .|.+||+.+++.......+... +.+++|++ ++.++++++. +.++||.++........+..
T Consensus 256 ~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~-~~~~~~~~~~-~~~~l~~~d~~~~~~~~l~~ 333 (662)
T 3azo_A 256 IVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLA-NGLIAVVHGK-GAAVLGILDPESGELVDAAG 333 (662)
T ss_dssp EEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECT-TSCEEEEEBS-SSCEEEEEETTTTEEEECCS
T ss_pred EEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeC-CCEEEEEEEc-CccEEEEEECCCCcEEEecC
Confidence 77887788 6777777666654333322221 56788888 7889999988 99999965443333455556
Q ss_pred cCCCEEEE-EEcCCCCEEEEEECCCeEEEEecCC
Q 005096 397 HDNTVWDL-AWHPIGYLLCSGSNDHTTKFWCRNR 429 (715)
Q Consensus 397 h~~~V~~l-~~spdg~~L~sgs~Dg~I~iWdl~~ 429 (715)
+...+..+ +++.+..++++++.+....||.++.
T Consensus 334 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~ 367 (662)
T 3azo_A 334 PWTEWAATLTVSGTRAVGVAASPRTAYEVVELDT 367 (662)
T ss_dssp SCCEEEEEEEEETTEEEEEEEETTEEEEEEEEET
T ss_pred CCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEEC
Confidence 67777777 6654444555666676667776654
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.86 E-value=1.5e-19 Score=195.27 Aligned_cols=271 Identities=12% Similarity=0.084 Sum_probs=187.1
Q ss_pred EEEEEeCC--CeEEEEeC--CCCceEEEEe---ccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCC-CCceeeeecC-CC
Q 005096 158 RLITGSQS--GEFTLWNG--QSFNFEMILQ---AHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNN-MNNVKANKSA-HK 228 (715)
Q Consensus 158 ~Latgs~d--g~I~Iwd~--~~~~~~~~l~---~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~-~~~~~~~~~~-h~ 228 (715)
+|++|+.. +.|.+|++ +++++..... .....+..++|++|+++|++++.+ .|.+|+++ ++++...... ..
T Consensus 4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~ 82 (365)
T 1jof_A 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIG 82 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECC
T ss_pred EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecC
Confidence 45666653 46777664 4555433222 233467899999999999998887 99999987 6665433221 11
Q ss_pred CCeEEEEEecCCCE--EEEEE-------------CCCcEEEEECC-CCeeEEEec----ccCCceEEEEEcCCCCEEEEE
Q 005096 229 ESVRDLSFCRTDLK--FCSCS-------------DDTTVKVWDFA-RCQEERSLT----GHGWDVKSVDWHPTKSLLVSG 288 (715)
Q Consensus 229 ~~I~~l~~spd~~~--Las~s-------------~Dg~V~iwdl~-~~~~~~~l~----~~~~~I~si~~spdg~~L~sg 288 (715)
..+.+++|++|+++ +++++ .++++.+|+++ +++....+. .+...+.+++|++||++|+++
T Consensus 83 g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~ 162 (365)
T 1jof_A 83 GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSA 162 (365)
T ss_dssp SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEE
T ss_pred CCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEE
Confidence 23567899999984 44543 68999999997 455444333 245679999999999988877
Q ss_pred eC-CCcEEEEECC-CCcee--EEec--cCCCceEEEEEcCCCCEEEEEEC-CCeEEEEECC--CCeEE---EEeec----
Q 005096 289 GK-DSLVKLWDAK-SGREL--CSFH--GHKNMVLCVKWNQNGNWVLTASK-DQIIKLYDIR--AMKEL---ESFRG---- 352 (715)
Q Consensus 289 s~-Dg~I~iwDl~-s~~~~--~~~~--~~~~~I~sl~~spdg~~Lasgs~-dg~I~iwDl~--t~~~~---~~~~~---- 352 (715)
+. ++.|++||++ +++.. ..+. .+...+..++|++||++|++++. ++.|.+|+++ +++.. ..+..
T Consensus 163 ~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~ 242 (365)
T 1jof_A 163 DLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPG 242 (365)
T ss_dssp ETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTT
T ss_pred cCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCC
Confidence 64 6799999998 67643 2333 23567899999999999988875 6899999875 45542 22221
Q ss_pred ---CCC------CeEEEE-EccCCCCEEEEEeC-CC-----cEEEEEcCCCCceEE---EeeccCCCEEEEEEcC---CC
Q 005096 353 ---HRK------DVTALA-WHPFHEEYFVSGSL-DG-----SIFHWLVGHETPQVE---IHNVHDNTVWDLAWHP---IG 410 (715)
Q Consensus 353 ---h~~------~V~~l~-~sp~~~~~l~sgs~-DG-----~I~iwd~~~~~~~~~---~~~~h~~~V~~l~~sp---dg 410 (715)
+.. .+..++ |++ ++++|++++. +. .|.+|+++....+.. ....+...+..++|++ ||
T Consensus 243 ~~g~~~~~~~~~~~~~i~~~sp-dG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg 321 (365)
T 1jof_A 243 IPDRDPETGKGLYRADVCALTF-SGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSD 321 (365)
T ss_dssp CCCBCTTTSSBSEEEEEEEECT-TSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCT
T ss_pred cCCcccccccccccccEEEECC-CCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCC
Confidence 121 488999 999 6666665543 23 899999964333332 1222444567889999 89
Q ss_pred CEEEEEECC-CeEEEEecCCC
Q 005096 411 YLLCSGSND-HTTKFWCRNRP 430 (715)
Q Consensus 411 ~~L~sgs~D-g~I~iWdl~~~ 430 (715)
++|++++.+ +.|++|+++..
T Consensus 322 ~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 322 EWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp TEEEEECSSSCEEEEEEEETT
T ss_pred CEEEEEEcCCCeEEEEEEchh
Confidence 999998864 89999999754
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.84 E-value=3.6e-20 Score=200.33 Aligned_cols=282 Identities=10% Similarity=0.005 Sum_probs=192.7
Q ss_pred ccEEEEEEcCCCCEEEEEeCC---CeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcee
Q 005096 145 CSINRVLWTPTGRRLITGSQS---GEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVK 221 (715)
Q Consensus 145 ~~I~~l~~spdg~~Latgs~d---g~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~ 221 (715)
..+.+++|+|||++|+++..+ ..|++||+.+++.......+...+..+.|++|+++|+.++.++.|++||+.+++..
T Consensus 36 ~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~ 115 (396)
T 3c5m_A 36 NYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQ 115 (396)
T ss_dssp CCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEE
T ss_pred eeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcE
Confidence 346788999999998877653 46889999887765443333322334789999999999999999999999988766
Q ss_pred eeecCCCCCeEE-------------------EEEecCCCEEEEE-----ECCCcEEEEECCCCeeEEEecccCCceEEEE
Q 005096 222 ANKSAHKESVRD-------------------LSFCRTDLKFCSC-----SDDTTVKVWDFARCQEERSLTGHGWDVKSVD 277 (715)
Q Consensus 222 ~~~~~h~~~I~~-------------------l~~spd~~~Las~-----s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~ 277 (715)
.....+...... ++|+++++.++.+ ..+..|++||+.+++..... .+...+..+.
T Consensus 116 ~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~ 194 (396)
T 3c5m_A 116 VIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH-QDTAWLGHPI 194 (396)
T ss_dssp EEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE-EESSCEEEEE
T ss_pred EEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeec-cCCcccccce
Confidence 555434332222 3456666665543 35668999999887665444 4667789999
Q ss_pred EcC-CCCEEEEEeCC------CcEEEEECCCCceeEEeccC--CCceEEEEEcCCCCEEEEEECC-----CeEEEEECCC
Q 005096 278 WHP-TKSLLVSGGKD------SLVKLWDAKSGRELCSFHGH--KNMVLCVKWNQNGNWVLTASKD-----QIIKLYDIRA 343 (715)
Q Consensus 278 ~sp-dg~~L~sgs~D------g~I~iwDl~s~~~~~~~~~~--~~~I~sl~~spdg~~Lasgs~d-----g~I~iwDl~t 343 (715)
|++ +++.|+.++.+ ..|.+||+.+++.. .+..+ ...+..++|++|+++|++++.+ +.|++||+.+
T Consensus 195 ~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~ 273 (396)
T 3c5m_A 195 YRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVR-KIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPET 273 (396)
T ss_dssp EETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCE-ESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTT
T ss_pred ECCCCCCEEEEEecCCCCCCCceEEEEECCCCcee-EeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCC
Confidence 999 78877766553 36888998765533 33322 3358889999999988777544 4599999988
Q ss_pred CeEEEEeecCCCCeEEEEEccCCCCEEEEEe----------------CCCcEEEEEcCCCCceEEEeeccCC--------
Q 005096 344 MKELESFRGHRKDVTALAWHPFHEEYFVSGS----------------LDGSIFHWLVGHETPQVEIHNVHDN-------- 399 (715)
Q Consensus 344 ~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs----------------~DG~I~iwd~~~~~~~~~~~~~h~~-------- 399 (715)
++....... . ... +.|++.++++|++++ .+..|++||+.++... .+. .+..
T Consensus 274 g~~~~l~~~-~-~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~-~~~~~~~~~~~~ 348 (396)
T 3c5m_A 274 LENEEVMVM-P-PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQ-KLC-KHSTSWDVLDGD 348 (396)
T ss_dssp CCEEEEEEC-C-SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCC-EEE-ECCCCCCCBTTB
T ss_pred CCeEEeeeC-C-CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceE-Ecc-CCCCcccccccc
Confidence 765443321 1 233 889883445666544 3468999999776543 222 2333
Q ss_pred ---CEEEEEEcCCCCEEEEEEC-CCeEEEEecCCCCCc
Q 005096 400 ---TVWDLAWHPIGYLLCSGSN-DHTTKFWCRNRPGDT 433 (715)
Q Consensus 400 ---~V~~l~~spdg~~L~sgs~-Dg~I~iWdl~~~~~~ 433 (715)
.+..++|++||+.|+.++. ++...||.++..+..
T Consensus 349 ~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~~~ 386 (396)
T 3c5m_A 349 RQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPESY 386 (396)
T ss_dssp SSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCTTC
T ss_pred ccCCCCCceEccCCCeEEEEecCCCCceEEEEEEcccc
Confidence 2567899999988877764 677777777644433
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.83 E-value=1.1e-18 Score=188.34 Aligned_cols=244 Identities=11% Similarity=0.073 Sum_probs=176.8
Q ss_pred CCccEEEEEEcCCCCEEEEEeCCCeEEEEeCC-CCceEEEEecc-CCCEEEEEEcCCCCE--EEEEe-------------
Q 005096 143 NRCSINRVLWTPTGRRLITGSQSGEFTLWNGQ-SFNFEMILQAH-DHAIRSMVWSHNDNW--MVSGD------------- 205 (715)
Q Consensus 143 H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~-~~~~~~~l~~h-~~~V~~l~~spdg~~--L~tgs------------- 205 (715)
....+..++|++||++|++++.+ .|.+||+. +++........ .+.+.+++|++|+++ +++++
T Consensus 38 ~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~ 116 (365)
T 1jof_A 38 QDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYK 116 (365)
T ss_dssp TTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESS
T ss_pred CCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeec
Confidence 33467889999999999999888 89999987 77665443311 133556899999994 44553
Q ss_pred CCCcEEEEeCCC-Cceeeeec----CCCCCeEEEEEecCCCEEEEEEC-CCcEEEEECC-CCeeE--EEec--ccCCceE
Q 005096 206 DGGAIKYWQNNM-NNVKANKS----AHKESVRDLSFCRTDLKFCSCSD-DTTVKVWDFA-RCQEE--RSLT--GHGWDVK 274 (715)
Q Consensus 206 ~dg~I~iwd~~~-~~~~~~~~----~h~~~I~~l~~spd~~~Las~s~-Dg~V~iwdl~-~~~~~--~~l~--~~~~~I~ 274 (715)
.++.+.+|+++. +++...+. .+...+.+++|++|+++|++++. ++.|++||++ +++.. ..+. .+...+.
T Consensus 117 ~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~ 196 (365)
T 1jof_A 117 FAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPR 196 (365)
T ss_dssp SCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEE
T ss_pred CCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCC
Confidence 689999999974 55443332 24567999999999998887764 6799999998 66543 2333 2356789
Q ss_pred EEEEcCCCCEEEEEeC-CCcEEEEECC--CCceeE---Eecc-------CCC------ceEEEE-EcCCCCEEEEEECCC
Q 005096 275 SVDWHPTKSLLVSGGK-DSLVKLWDAK--SGRELC---SFHG-------HKN------MVLCVK-WNQNGNWVLTASKDQ 334 (715)
Q Consensus 275 si~~spdg~~L~sgs~-Dg~I~iwDl~--s~~~~~---~~~~-------~~~------~I~sl~-~spdg~~Lasgs~dg 334 (715)
.++|++|+++|++++. ++.|.+|+++ +++... .+.. +.. .+.+++ |++||++|++++.+.
T Consensus 197 ~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~ 276 (365)
T 1jof_A 197 WVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRAN 276 (365)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEES
T ss_pred EeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCC
Confidence 9999999999888775 6899999765 455421 2211 121 588999 999999988776432
Q ss_pred ------eEEEEECC-CCeEEE---EeecCCCCeEEEEEccC--CCCEEEEEeC-CCcEEEEEcCCC
Q 005096 335 ------IIKLYDIR-AMKELE---SFRGHRKDVTALAWHPF--HEEYFVSGSL-DGSIFHWLVGHE 387 (715)
Q Consensus 335 ------~I~iwDl~-t~~~~~---~~~~h~~~V~~l~~sp~--~~~~l~sgs~-DG~I~iwd~~~~ 387 (715)
.|.+||+. +++... .+..+...+..++|+|. ++++|++++. ++.|.||+++..
T Consensus 277 ~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 277 KFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp STTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred CCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 89999996 565443 23345556778999995 5777777765 589999998765
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.83 E-value=3.3e-19 Score=210.94 Aligned_cols=278 Identities=11% Similarity=0.077 Sum_probs=194.5
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCC-----EEEEEEcCCCCEEEEEeCC---------CcEE
Q 005096 146 SINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHA-----IRSMVWSHNDNWMVSGDDG---------GAIK 211 (715)
Q Consensus 146 ~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~-----V~~l~~spdg~~L~tgs~d---------g~I~ 211 (715)
...+++|++||++|+++ |++|++||+.+++....+..|... ...++||+|+++|++++.+ +.+.
T Consensus 18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~ 95 (740)
T 4a5s_A 18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYD 95 (740)
T ss_dssp CCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEE
T ss_pred cccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEE
Confidence 45689999999888886 899999999999988888877643 2448899999999988875 5677
Q ss_pred EEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEe-cccCCce-----------------
Q 005096 212 YWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSL-TGHGWDV----------------- 273 (715)
Q Consensus 212 iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l-~~~~~~I----------------- 273 (715)
+||+.+++... +..+...+...+|||||+.||.+. |+.|++||+.+++..... .++...+
T Consensus 96 ~~d~~~~~~~~-l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~ 173 (740)
T 4a5s_A 96 IYDLNKRQLIT-EERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAY 173 (740)
T ss_dssp EEETTTTEECC-SSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSS
T ss_pred EEECCCCcEEE-cccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCC
Confidence 99999987654 556777899999999999999885 679999999887654322 1222222
Q ss_pred EEEEEcCCCCEEEEEeCCC------------------------------------cEEEEECCC---Cc--eeEEec---
Q 005096 274 KSVDWHPTKSLLVSGGKDS------------------------------------LVKLWDAKS---GR--ELCSFH--- 309 (715)
Q Consensus 274 ~si~~spdg~~L~sgs~Dg------------------------------------~I~iwDl~s---~~--~~~~~~--- 309 (715)
.++.|||||+.|+.++.|. .|+|||+.+ ++ ....+.
T Consensus 174 ~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~ 253 (740)
T 4a5s_A 174 SALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPA 253 (740)
T ss_dssp BCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCH
T ss_pred cceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCc
Confidence 3589999999998875321 488899988 73 233443
Q ss_pred ---cCCCceEEEEEcCCCCEEEEEEC----CCeEEEEECCCCe----EE--EEe--ecCCCCeE-----EEEEccCCCCE
Q 005096 310 ---GHKNMVLCVKWNQNGNWVLTASK----DQIIKLYDIRAMK----EL--ESF--RGHRKDVT-----ALAWHPFHEEY 369 (715)
Q Consensus 310 ---~~~~~I~sl~~spdg~~Lasgs~----dg~I~iwDl~t~~----~~--~~~--~~h~~~V~-----~l~~sp~~~~~ 369 (715)
++...+..++|++|+++++.... +..|++||+.+++ +. ..+ ..+...|. .++|++ +++.
T Consensus 254 ~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fsp-DG~~ 332 (740)
T 4a5s_A 254 SMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTL-DGNS 332 (740)
T ss_dssp HHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECT-TSSE
T ss_pred cCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcC-CCCE
Confidence 26778999999999997766543 2379999999887 22 112 34555544 789999 5555
Q ss_pred EE-EEe-CCC--cEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECC-----CeEEEEecCCCC
Q 005096 370 FV-SGS-LDG--SIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSND-----HTTKFWCRNRPG 431 (715)
Q Consensus 370 l~-sgs-~DG--~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~D-----g~I~iWdl~~~~ 431 (715)
|+ ..+ .+| .|++||+..+.. .. +......|..+.+ .|++.|+..+.. +...||.++..+
T Consensus 333 l~~~~s~~~G~~~l~~~~~~~~~~-~~-lT~g~~~v~~~~~-~d~~~i~f~~~~~~~~~~~~~ly~v~~~g 400 (740)
T 4a5s_A 333 FYKIISNEEGYRHICYFQIDKKDC-TF-ITKGTWEVIGIEA-LTSDYLYYISNEYKGMPGGRNLYKIQLID 400 (740)
T ss_dssp EEEEEECTTSCEEEEEEETTCSSC-EE-SCCSSSCEEEEEE-ECSSEEEEEESCGGGCTTCBEEEEEETTE
T ss_pred EEEEEEcCCCceEEEEEECCCCce-Ee-cccCCEEEEEEEE-EeCCEEEEEEecCCCCCceeEEEEEECCC
Confidence 44 554 444 477778765443 23 3333445665542 235555544433 456777765544
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.83 E-value=7.3e-20 Score=210.11 Aligned_cols=232 Identities=8% Similarity=-0.003 Sum_probs=176.8
Q ss_pred CCCEEEEEEcCCCCEEEEEeC-CCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEEC---CCcEEEEECCC--
Q 005096 186 DHAIRSMVWSHNDNWMVSGDD-GGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSD---DTTVKVWDFAR-- 259 (715)
Q Consensus 186 ~~~V~~l~~spdg~~L~tgs~-dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~---Dg~V~iwdl~~-- 259 (715)
...|.+++|++||++|++++. ||+++||+++.++.......+...+..++|++| +++++++. +...+||++..
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~ 99 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSR 99 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTS
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccC
Confidence 467999999999999998876 999999999766655544434368999999998 77777775 45556655432
Q ss_pred -CeeEEEecccCCceEEEEEcCCCC-EEEEEeCCCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECC----
Q 005096 260 -CQEERSLTGHGWDVKSVDWHPTKS-LLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKD---- 333 (715)
Q Consensus 260 -~~~~~~l~~~~~~I~si~~spdg~-~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~d---- 333 (715)
+... .+... ..+..++|++|++ .+++.+.++.+.|||+++++....... .. .+++|+|||++|++++.+
T Consensus 100 ~g~~~-~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~-~~--~~~~~spDG~~la~~~~~~~~~ 174 (582)
T 3o4h_A 100 PGEEQ-RLEAV-KPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARL-PG--FGFVSDIRGDLIAGLGFFGGGR 174 (582)
T ss_dssp TTCCE-ECTTS-CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEE-SS--CEEEEEEETTEEEEEEEEETTE
T ss_pred CCccc-cccCC-CCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecC-CC--ceEEECCCCCEEEEEEEcCCCC
Confidence 2222 33322 2345668888875 334444455566999998876555443 33 789999999999988777
Q ss_pred CeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCC--cEEEEEcCCCCceEEEeeccCCCEEEEE------
Q 005096 334 QIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDG--SIFHWLVGHETPQVEIHNVHDNTVWDLA------ 405 (715)
Q Consensus 334 g~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG--~I~iwd~~~~~~~~~~~~~h~~~V~~l~------ 405 (715)
+.|++||+.+++.. .+..+...+..++|+| ++++|++++.++ .|++||++++... +...|...+..++
T Consensus 175 ~~i~~~d~~~g~~~-~l~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~i~~~d~~~~~~~--~~~~~~~~~~~~~~~~~~~ 250 (582)
T 3o4h_A 175 VSLFTSNLSSGGLR-VFDSGEGSFSSASISP-GMKVTAGLETAREARLVTVDPRDGSVE--DLELPSKDFSSYRPTAITW 250 (582)
T ss_dssp EEEEEEETTTCCCE-EECCSSCEEEEEEECT-TSCEEEEEECSSCEEEEEECTTTCCEE--ECCCSCSHHHHHCCSEEEE
T ss_pred eEEEEEcCCCCCce-EeecCCCccccceECC-CCCEEEEccCCCeeEEEEEcCCCCcEE--EccCCCcChhhhhhccccc
Confidence 78999999887754 6677888899999999 788888888888 8999999877654 5556666676677
Q ss_pred --EcCCCCEEEEEECCCeEEEEec
Q 005096 406 --WHPIGYLLCSGSNDHTTKFWCR 427 (715)
Q Consensus 406 --~spdg~~L~sgs~Dg~I~iWdl 427 (715)
|++||.++++++.|++++||++
T Consensus 251 ~~~spdg~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 251 LGYLPDGRLAVVARREGRSAVFID 274 (582)
T ss_dssp EEECTTSCEEEEEEETTEEEEEET
T ss_pred eeEcCCCcEEEEEEcCCcEEEEEE
Confidence 9999999999999999999998
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.82 E-value=4.4e-18 Score=181.17 Aligned_cols=258 Identities=11% Similarity=0.067 Sum_probs=185.6
Q ss_pred ccEEEEEEcCCCCEEEEEe---------CCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCC---C--cE
Q 005096 145 CSINRVLWTPTGRRLITGS---------QSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDG---G--AI 210 (715)
Q Consensus 145 ~~I~~l~~spdg~~Latgs---------~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~d---g--~I 210 (715)
..|..++| ||++|+... .++.|++||+.+++... + ..+.+++|+|||++|+.++.+ + .|
T Consensus 15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l 87 (347)
T 2gop_A 15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF-I----ENATMPRISPDGKKIAFMRANEEKKVSEI 87 (347)
T ss_dssp CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE-E----ESCEEEEECTTSSEEEEEEEETTTTEEEE
T ss_pred EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE-c----ccCCCeEECCCCCEEEEEEeccCCCcceE
Confidence 34677788 898888653 25679999999876543 3 568899999999999877653 3 37
Q ss_pred EEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECC---------------------------CcEEEEECCCCeeE
Q 005096 211 KYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDD---------------------------TTVKVWDFARCQEE 263 (715)
Q Consensus 211 ~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~D---------------------------g~V~iwdl~~~~~~ 263 (715)
.+|++.+++........ . +..++|++|++.|+.++.+ ..|++||+.+++.+
T Consensus 88 ~~~~~~~g~~~~l~~~~-~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~ 165 (347)
T 2gop_A 88 WVADLETLSSKKILEAK-N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVI 165 (347)
T ss_dssp EEEETTTTEEEEEEEES-E-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEE
T ss_pred EEEECCCCceEEEEcCC-C-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEE
Confidence 78888887665544433 3 9999999999998887642 57999999888764
Q ss_pred EEecccCCceEEEEEcCCCCEEEEEeCCC-------cEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECC---
Q 005096 264 RSLTGHGWDVKSVDWHPTKSLLVSGGKDS-------LVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKD--- 333 (715)
Q Consensus 264 ~~l~~~~~~I~si~~spdg~~L~sgs~Dg-------~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~d--- 333 (715)
..+.. . .+..++|++|+ +++++..+. ...||.+++++ +..+..+ ..+.++ ++||++|++++.+
T Consensus 166 ~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~-~~~l~~~-~~~~~~--spdg~~l~~~~~~~~~ 238 (347)
T 2gop_A 166 EEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGK-EEKMFEK-VSFYAV--DSDGERILLYGKPEKK 238 (347)
T ss_dssp EEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTE-EEEEEEE-ESEEEE--EECSSCEEEEECCSSS
T ss_pred eeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCc-eEEeccC-cceeeE--CCCCCEEEEEEccccC
Confidence 55544 3 78899999999 777776542 34444444444 3344334 445544 8999998887754
Q ss_pred -----CeEEEEECCCCeEEEEeecCCCCeEE-EEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEc
Q 005096 334 -----QIIKLYDIRAMKELESFRGHRKDVTA-LAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWH 407 (715)
Q Consensus 334 -----g~I~iwDl~t~~~~~~~~~h~~~V~~-l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s 407 (715)
..|.+|| +++.......+...+.. +.|+ ++ ++++++.++.++|| +++ .....+. .+...|.+++|+
T Consensus 239 ~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s--dg-~~~~~~~~~~~~l~-~~~-g~~~~~~-~~~~~v~~~~~s 310 (347)
T 2gop_A 239 YMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD--GK-VYFTLFEEGSVNLY-IWD-GEIKPIA-KGRHWIMGFDVD 310 (347)
T ss_dssp CCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET--TE-EEEEEEETTEEEEE-EES-SSEEEEE-CSSSEEEEEEES
T ss_pred CccccceEEEEC--CCceEeccccCCcccCCccEEc--Cc-EEEEEecCCcEEEE-EcC-CceEEEe-cCCCeEEeeeee
Confidence 3688888 55554444556677886 8998 44 88999999999999 873 3343444 357789999999
Q ss_pred CCCCEEEEEECCCeE-EEEecC
Q 005096 408 PIGYLLCSGSNDHTT-KFWCRN 428 (715)
Q Consensus 408 pdg~~L~sgs~Dg~I-~iWdl~ 428 (715)
+ .++++++.++.. .||.++
T Consensus 311 ~--~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 311 E--IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp S--SEEEEEECSSSCCEEEEES
T ss_pred C--cEEEEEcCCCChHHheEeC
Confidence 8 677777777765 888876
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.81 E-value=8.7e-19 Score=207.33 Aligned_cols=278 Identities=8% Similarity=0.015 Sum_probs=188.9
Q ss_pred EEEEEEcCCCCEEEEEeCC---------CeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 005096 147 INRVLWTPTGRRLITGSQS---------GEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNM 217 (715)
Q Consensus 147 I~~l~~spdg~~Latgs~d---------g~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~ 217 (715)
...++|||||++|++++.+ +.++|||+.+++.. .+..+...+..++|||||+.||.+. ++.|++|++.+
T Consensus 64 ~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~ 141 (740)
T 4a5s_A 64 INDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPN 141 (740)
T ss_dssp CCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTT
T ss_pred ccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEE-EcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCC
Confidence 3568999999999998876 56789999998754 4666778899999999999998874 68999999988
Q ss_pred Cceeeeec-CCCCCe-----------------EEEEEecCCCEEEEEECCC-----------------------------
Q 005096 218 NNVKANKS-AHKESV-----------------RDLSFCRTDLKFCSCSDDT----------------------------- 250 (715)
Q Consensus 218 ~~~~~~~~-~h~~~I-----------------~~l~~spd~~~Las~s~Dg----------------------------- 250 (715)
++...... ++...+ ..+.|||||++||.++.|.
T Consensus 142 ~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~ 221 (740)
T 4a5s_A 142 LPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKA 221 (740)
T ss_dssp SCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBT
T ss_pred CceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCC
Confidence 76554322 222222 3589999999999875322
Q ss_pred -------cEEEEECCC---Ce--eEEEec------ccCCceEEEEEcCCCCEEEEEeC----CCcEEEEECCCCc----e
Q 005096 251 -------TVKVWDFAR---CQ--EERSLT------GHGWDVKSVDWHPTKSLLVSGGK----DSLVKLWDAKSGR----E 304 (715)
Q Consensus 251 -------~V~iwdl~~---~~--~~~~l~------~~~~~I~si~~spdg~~L~sgs~----Dg~I~iwDl~s~~----~ 304 (715)
+|++||+.+ ++ ....+. ++...+..++|+||+++++.... +..|++||+++++ +
T Consensus 222 G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~ 301 (740)
T 4a5s_A 222 GAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNC 301 (740)
T ss_dssp TSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEE
T ss_pred cCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccce
Confidence 488899987 63 223333 26777999999999997665543 2369999999887 2
Q ss_pred e--EEe--ccCCCceE-----EEEEcCCCCEEE-EEEC-C--CeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEE
Q 005096 305 L--CSF--HGHKNMVL-----CVKWNQNGNWVL-TASK-D--QIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFV 371 (715)
Q Consensus 305 ~--~~~--~~~~~~I~-----sl~~spdg~~La-sgs~-d--g~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~ 371 (715)
. ..+ ..+...|. .++|++||+.|+ ..+. + ..|++||+.+++.. .+......|..+.+ .+++.+++
T Consensus 302 ~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~-~lT~g~~~v~~~~~-~d~~~i~f 379 (740)
T 4a5s_A 302 LVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCT-FITKGTWEVIGIEA-LTSDYLYY 379 (740)
T ss_dssp CGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCE-ESCCSSSCEEEEEE-ECSSEEEE
T ss_pred eEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceE-ecccCCEEEEEEEE-EeCCEEEE
Confidence 2 222 34555554 789999999877 6653 3 36888998865544 44444556666553 32455555
Q ss_pred EEeC----CCcEEEEEcCCCCceEE-Eeec----cCCCEEEEEEcCCCCEEEEEECC---CeEEEEecC
Q 005096 372 SGSL----DGSIFHWLVGHETPQVE-IHNV----HDNTVWDLAWHPIGYLLCSGSND---HTTKFWCRN 428 (715)
Q Consensus 372 sgs~----DG~I~iwd~~~~~~~~~-~~~~----h~~~V~~l~~spdg~~L~sgs~D---g~I~iWdl~ 428 (715)
+++. .+...||.++....... .+.. ....+..+.|++++++++....+ ..+.+++.+
T Consensus 380 ~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s~~~~p~~~l~~~~ 448 (740)
T 4a5s_A 380 ISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSV 448 (740)
T ss_dssp EESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETT
T ss_pred EEecCCCCCceeEEEEEECCCCCcceeeccccCCCCCceEEEEECCCCCEEEEEeCCCCCCEEEEEECC
Confidence 5554 24455665543332221 2221 23568899999999877665543 356677664
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.81 E-value=5.8e-18 Score=179.38 Aligned_cols=240 Identities=8% Similarity=0.030 Sum_probs=167.5
Q ss_pred cEEEEEEcCCCCEEEE-EeCCCeEEEEeCCCCceEEEEeccC------CCEEEEEEcCCCCEEEEEeCC-----------
Q 005096 146 SINRVLWTPTGRRLIT-GSQSGEFTLWNGQSFNFEMILQAHD------HAIRSMVWSHNDNWMVSGDDG----------- 207 (715)
Q Consensus 146 ~I~~l~~spdg~~Lat-gs~dg~I~Iwd~~~~~~~~~l~~h~------~~V~~l~~spdg~~L~tgs~d----------- 207 (715)
.+..++|++|++++++ +..++.|++||+.+++.+..+.... ..+.+++|++|+++|++++.+
T Consensus 44 ~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~ 123 (349)
T 1jmx_B 44 GPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVK 123 (349)
T ss_dssp SSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEEC
T ss_pred CCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccC
Confidence 4678999999987664 4568999999999998887776432 237789999999999988865
Q ss_pred -CcEEEEeCCCCcee---eeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCC------------
Q 005096 208 -GAIKYWQNNMNNVK---ANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGW------------ 271 (715)
Q Consensus 208 -g~I~iwd~~~~~~~---~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~------------ 271 (715)
+.|.+||+.+++.. ..+. +...+.+++|++|++ +++++. .|++||+.+++.+..+.....
T Consensus 124 ~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~-l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (349)
T 1jmx_B 124 PPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDGS-LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLY 199 (349)
T ss_dssp CCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTSC-EEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCC
T ss_pred CCeEEEEECCCccccceeeecc-CCCcccceeECCCCc-EEEccC--cEEEEeCCCCceeccccccccCCccccCcccee
Confidence 89999999875432 2222 344688999999999 655543 499999998887776653320
Q ss_pred ------------ceEEEEEcCCCCEEEEEeCC-CcEEEEECCCCcee-EEeccCCCceEEEEEcC-CCCEEEEEECCCeE
Q 005096 272 ------------DVKSVDWHPTKSLLVSGGKD-SLVKLWDAKSGREL-CSFHGHKNMVLCVKWNQ-NGNWVLTASKDQII 336 (715)
Q Consensus 272 ------------~I~si~~spdg~~L~sgs~D-g~I~iwDl~s~~~~-~~~~~~~~~I~sl~~sp-dg~~Lasgs~dg~I 336 (715)
...++++++++......... ..+..+|+.+++.. ..+......+.+++|++ |+++|+++ ++.|
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v 277 (349)
T 1jmx_B 200 FWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRL 277 (349)
T ss_dssp CCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEE
T ss_pred eecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeE
Confidence 23456666554211111001 11223555544321 12223456788999999 99999988 8899
Q ss_pred EEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEE
Q 005096 337 KLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEI 393 (715)
Q Consensus 337 ~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~ 393 (715)
.+||+++++.+..+.. ...+.+++|++ ++++|++++.++.|++||.++.+.+..+
T Consensus 278 ~~~d~~~~~~~~~~~~-~~~~~~~~~s~-dg~~l~~~~~~~~v~v~d~~~~~~~~~~ 332 (349)
T 1jmx_B 278 AKYDLKQRKLIKAANL-DHTYYCVAFDK-KGDKLYLGGTFNDLAVFNPDTLEKVKNI 332 (349)
T ss_dssp EEEETTTTEEEEEEEC-SSCCCEEEECS-SSSCEEEESBSSEEEEEETTTTEEEEEE
T ss_pred EEEECccCeEEEEEcC-CCCccceEECC-CCCEEEEecCCCeEEEEeccccceeeee
Confidence 9999999998888764 34578999999 5666666788899999999877654443
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=1.7e-17 Score=176.54 Aligned_cols=241 Identities=7% Similarity=0.042 Sum_probs=188.5
Q ss_pred CccEEEEEEcCCCCEEEEEeCC------------------------CeEEEEeCCCCceEEEEe-ccCCCEEEEEEcCCC
Q 005096 144 RCSINRVLWTPTGRRLITGSQS------------------------GEFTLWNGQSFNFEMILQ-AHDHAIRSMVWSHND 198 (715)
Q Consensus 144 ~~~I~~l~~spdg~~Latgs~d------------------------g~I~Iwd~~~~~~~~~l~-~h~~~V~~l~~spdg 198 (715)
-+.|.+|+++++|+++++...+ ++|++||..+++.+..+. .+-.....|++++++
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g 102 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG 102 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence 3569999999999988888777 479999999888877665 344678999999999
Q ss_pred CEEEEEeCCCcEEEEeCCCCc-eeeee---------cCCCCCeEEEEEec-CCCEEEEEE-CCCcEEEEECCCCeeEEEe
Q 005096 199 NWMVSGDDGGAIKYWQNNMNN-VKANK---------SAHKESVRDLSFCR-TDLKFCSCS-DDTTVKVWDFARCQEERSL 266 (715)
Q Consensus 199 ~~L~tgs~dg~I~iwd~~~~~-~~~~~---------~~h~~~I~~l~~sp-d~~~Las~s-~Dg~V~iwdl~~~~~~~~l 266 (715)
+++++...++.|++|+.+... .+..+ ..+......|++++ ++.++++.+ .++.|++|| .+++.+..+
T Consensus 103 ~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~ 181 (329)
T 3fvz_A 103 NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQW 181 (329)
T ss_dssp CEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEE
T ss_pred CEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEe
Confidence 988888889999999986552 33333 23445789999999 777777776 689999999 556666666
Q ss_pred cccC----------CceEEEEEcCC-CCEEEEEeCCCcEEEEECCCCceeEEec--cCCCceEEEEEcC------CCCEE
Q 005096 267 TGHG----------WDVKSVDWHPT-KSLLVSGGKDSLVKLWDAKSGRELCSFH--GHKNMVLCVKWNQ------NGNWV 327 (715)
Q Consensus 267 ~~~~----------~~I~si~~spd-g~~L~sgs~Dg~I~iwDl~s~~~~~~~~--~~~~~I~sl~~sp------dg~~L 327 (715)
.... .....|+++++ ++++++...++.|++||.++++.+..+. .+...+.+++|++ +++.+
T Consensus 182 ~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~ 261 (329)
T 3fvz_A 182 GEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNGKPY 261 (329)
T ss_dssp CEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEECCCC
T ss_pred ccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEeCCCEE
Confidence 4322 34889999998 6677777788899999999888888874 3556788999998 23222
Q ss_pred EEEECCCeEEEEECCCCeEEEEee---cCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCC
Q 005096 328 LTASKDQIIKLYDIRAMKELESFR---GHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGH 386 (715)
Q Consensus 328 asgs~dg~I~iwDl~t~~~~~~~~---~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~ 386 (715)
++...+..|++||+.+++.+..+. .+...+.+|++++ ++.++++...+++|++|++..
T Consensus 262 v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~-dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 262 FGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASE-DGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp TTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECT-TSEEEEEESSSCCEEEEEEEE
T ss_pred eccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECC-CCCEEEEECCCCEEEEEeCCc
Confidence 222344589999999999998874 5667799999999 668888888999999999854
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.80 E-value=7.3e-17 Score=167.18 Aligned_cols=240 Identities=10% Similarity=0.118 Sum_probs=183.0
Q ss_pred CCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEec------cCCCEEEEEEc-CCCCEEEEEeC-CCcEEE
Q 005096 141 NKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQA------HDHAIRSMVWS-HNDNWMVSGDD-GGAIKY 212 (715)
Q Consensus 141 ~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~------h~~~V~~l~~s-pdg~~L~tgs~-dg~I~i 212 (715)
.++-..+.+|+++++++++++...++.|.+||.+ ++.+..+.. +...+.+++++ .+++++++... ++.|.+
T Consensus 26 ~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~ 104 (286)
T 1q7f_A 26 EGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQI 104 (286)
T ss_dssp TTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEE
T ss_pred CCccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEE
Confidence 3456679999999999988888889999999987 556655542 34578999994 66666665533 789999
Q ss_pred EeCCCCceeeeec-CCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEec--ccCCceEEEEEcCCCCEEEEEe
Q 005096 213 WQNNMNNVKANKS-AHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLT--GHGWDVKSVDWHPTKSLLVSGG 289 (715)
Q Consensus 213 wd~~~~~~~~~~~-~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~--~~~~~I~si~~spdg~~L~sgs 289 (715)
|| .+++.+..+. .+...+.+++++++++++++...++.|++||.. ++.+..+. .+...+.+|+++++++++++..
T Consensus 105 ~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~ 182 (286)
T 1q7f_A 105 YN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDN 182 (286)
T ss_dssp EC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEG
T ss_pred EC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEEC
Confidence 99 4555555443 344678999999999988877788999999964 45555553 3445689999999999888777
Q ss_pred CCCcEEEEECCCCceeEEeccC--CCceEEEEEcCCCCEEEEEECCC-eEEEEECCCCeEEEEeecCCC--CeEEEEEcc
Q 005096 290 KDSLVKLWDAKSGRELCSFHGH--KNMVLCVKWNQNGNWVLTASKDQ-IIKLYDIRAMKELESFRGHRK--DVTALAWHP 364 (715)
Q Consensus 290 ~Dg~I~iwDl~s~~~~~~~~~~--~~~I~sl~~spdg~~Lasgs~dg-~I~iwDl~t~~~~~~~~~h~~--~V~~l~~sp 364 (715)
.++.|++||.+ ++.+..+... ...+..|+++++++++++...++ .|.+||. +++.+..+..+.. .+.++++++
T Consensus 183 ~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~~ 260 (286)
T 1q7f_A 183 RAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMD 260 (286)
T ss_dssp GGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEET
T ss_pred CCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcceeEEECC
Confidence 88999999975 5666666433 35789999999999888887776 9999995 4677777765443 478999999
Q ss_pred CCCCEEEEEeCCCcEEEEEcCCC
Q 005096 365 FHEEYFVSGSLDGSIFHWLVGHE 387 (715)
Q Consensus 365 ~~~~~l~sgs~DG~I~iwd~~~~ 387 (715)
+++++++ +.|++|++|++...
T Consensus 261 -~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 261 -DGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp -TTEEEEE-ETTTEEEEEECSCC
T ss_pred -CCcEEEE-CCCCeEEEEEcccc
Confidence 6677776 67999999998553
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.80 E-value=2.7e-17 Score=174.30 Aligned_cols=269 Identities=7% Similarity=0.023 Sum_probs=195.0
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeee
Q 005096 145 CSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANK 224 (715)
Q Consensus 145 ~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~ 224 (715)
..|.+++|++++..++..+.++.+++| ..+....+..+...+.+++|++++++++++..++.|.+||.++++.....
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~ 82 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPF 82 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEE
T ss_pred cccceeeecCCccceeEEeecccCccc---ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEe
Confidence 346778888888878777888899999 34456667777778899999999998888888999999999888766554
Q ss_pred cCCCCCeEEEEEecCCCEEEEEECC----CcEEEEECCCCeeEEEec--ccCCceEEEEEcCCCCEEEEEeC------CC
Q 005096 225 SAHKESVRDLSFCRTDLKFCSCSDD----TTVKVWDFARCQEERSLT--GHGWDVKSVDWHPTKSLLVSGGK------DS 292 (715)
Q Consensus 225 ~~h~~~I~~l~~spd~~~Las~s~D----g~V~iwdl~~~~~~~~l~--~~~~~I~si~~spdg~~L~sgs~------Dg 292 (715)
..+...+.+++++++++++++...+ +.|.+||.++.+....+. .....+.+++++++++++++... ++
T Consensus 83 ~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~ 162 (333)
T 2dg1_A 83 VSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLG 162 (333)
T ss_dssp ECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCE
T ss_pred eCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCc
Confidence 4566789999999999888777666 689999998766543332 23457899999999987776653 35
Q ss_pred cEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEE-ECCCeEEEEECCC-CeEEEEe-----ecC--CCCeEEEEEc
Q 005096 293 LVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTA-SKDQIIKLYDIRA-MKELESF-----RGH--RKDVTALAWH 363 (715)
Q Consensus 293 ~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasg-s~dg~I~iwDl~t-~~~~~~~-----~~h--~~~V~~l~~s 363 (715)
.|..||.++++... +......+..++|++++++|+++ +.++.|.+||+++ +..+..+ ... ...+..++++
T Consensus 163 ~l~~~~~~~~~~~~-~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d 241 (333)
T 2dg1_A 163 GVYYVSPDFRTVTP-IIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCID 241 (333)
T ss_dssp EEEEECTTSCCEEE-EEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEB
T ss_pred eEEEEeCCCCEEEE-eecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEEC
Confidence 56777766554433 32233457899999999876655 4578999999964 3322211 111 1467889999
Q ss_pred cCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCC------CEEEEEEcCCCCEEEEEECCC
Q 005096 364 PFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDN------TVWDLAWHPIGYLLCSGSNDH 420 (715)
Q Consensus 364 p~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~------~V~~l~~spdg~~L~sgs~Dg 420 (715)
+ +++++++...++.|.+||.+ +... ..+..+.. .+.+++|++|+..|++++.++
T Consensus 242 ~-~G~l~v~~~~~~~v~~~d~~-g~~~-~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g 301 (333)
T 2dg1_A 242 S-DDNLYVAMYGQGRVLVFNKR-GYPI-GQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDI 301 (333)
T ss_dssp T-TCCEEEEEETTTEEEEECTT-SCEE-EEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred C-CCCEEEEEcCCCEEEEECCC-CCEE-EEEEcCCCccccccCcceEEECCCCCEEEEEeCcc
Confidence 8 67888888888999999984 3332 33322222 688999999987776666553
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=1.5e-15 Score=157.24 Aligned_cols=284 Identities=7% Similarity=-0.040 Sum_probs=204.8
Q ss_pred EEEecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEE-eccCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 005096 136 VHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMIL-QAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQ 214 (715)
Q Consensus 136 ~~~~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l-~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd 214 (715)
....+..+...+.+++++++|+++++...++.|.+||.. ++..... ......+.+++++++++++++...++.|..||
T Consensus 6 ~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~ 84 (299)
T 2z2n_A 6 QELNLTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRIT 84 (299)
T ss_dssp EEEECCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEEC
T ss_pred EEEcCCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEEC
Confidence 344566677889999999999977776668899999988 5544322 23457799999999999888777788999999
Q ss_pred CCCCceee-eecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEE-ecccCCceEEEEEcCCCCEEEEEeCCC
Q 005096 215 NNMNNVKA-NKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERS-LTGHGWDVKSVDWHPTKSLLVSGGKDS 292 (715)
Q Consensus 215 ~~~~~~~~-~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~-l~~~~~~I~si~~spdg~~L~sgs~Dg 292 (715)
.+ ++... .+......+.++++.++++++++...++.|.+||. +++.... +......+.+++++++++++++...++
T Consensus 85 ~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~ 162 (299)
T 2z2n_A 85 KK-GIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNN 162 (299)
T ss_dssp TT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTT
T ss_pred CC-CcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCC
Confidence 76 33322 22234567899999999988887777889999998 4443322 233456789999999998877777778
Q ss_pred cEEEEECCCCceeEE-eccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEE-eecCCCCeEEEEEccCCCCEE
Q 005096 293 LVKLWDAKSGRELCS-FHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELES-FRGHRKDVTALAWHPFHEEYF 370 (715)
Q Consensus 293 ~I~iwDl~s~~~~~~-~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~-~~~h~~~V~~l~~sp~~~~~l 370 (715)
.|.+||. +++.... +......+.+++++++++++++...++.|.+||. +++.... +......+.++++++ +++++
T Consensus 163 ~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~-~g~l~ 239 (299)
T 2z2n_A 163 AIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGA-GIDLW 239 (299)
T ss_dssp EEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECS-TTCEE
T ss_pred EEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECC-CCCEE
Confidence 9999998 6654432 2334456889999999987666666889999999 6654332 233456789999998 67777
Q ss_pred EEEeCCCcEEEEEcCCCCceEEE-eeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCC
Q 005096 371 VSGSLDGSIFHWLVGHETPQVEI-HNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNR 429 (715)
Q Consensus 371 ~sgs~DG~I~iwd~~~~~~~~~~-~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~ 429 (715)
++...++.|.+||.+ + ....+ ...+...+.++++ +++.++++.+ .+.|..++.+.
T Consensus 240 v~~~~~~~i~~~d~~-g-~~~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~ 295 (299)
T 2z2n_A 240 FTEWGANKIGRLTSN-N-IIEEYPIQIKSAEPHGICF-DGETIWFAME-CDKIGKLTLIK 295 (299)
T ss_dssp EEETTTTEEEEEETT-T-EEEEEECSSSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC-
T ss_pred EeccCCceEEEECCC-C-ceEEEeCCCCCCccceEEe-cCCCEEEEec-CCcEEEEEcCc
Confidence 776678899999983 3 22222 2234567999999 8887766655 56676776643
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.78 E-value=2.4e-16 Score=163.20 Aligned_cols=238 Identities=11% Similarity=0.132 Sum_probs=177.6
Q ss_pred cCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeec------CCCCCeEEEEEe-cCCCEEEEEEC-CCcEEEEE
Q 005096 185 HDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKS------AHKESVRDLSFC-RTDLKFCSCSD-DTTVKVWD 256 (715)
Q Consensus 185 h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~------~h~~~I~~l~~s-pd~~~Las~s~-Dg~V~iwd 256 (715)
+-..+.+++++++++++++...++.|.+||.+ ++....+. .+...+.++++. .+++++++... ++.|++||
T Consensus 28 ~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d 106 (286)
T 1q7f_A 28 QFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN 106 (286)
T ss_dssp CBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC
T ss_pred ccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC
Confidence 44678999999999988888889999999987 44444442 234578899995 56655555433 88999999
Q ss_pred CCCCeeEEEecc-cCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEec--cCCCceEEEEEcCCCCEEEEEECC
Q 005096 257 FARCQEERSLTG-HGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFH--GHKNMVLCVKWNQNGNWVLTASKD 333 (715)
Q Consensus 257 l~~~~~~~~l~~-~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~--~~~~~I~sl~~spdg~~Lasgs~d 333 (715)
.+++.+..+.. +...+.+|+++++++++++...++.|++||.+ ++.+..+. .+...+.+|+++++++++++...+
T Consensus 107 -~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~ 184 (286)
T 1q7f_A 107 -QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRA 184 (286)
T ss_dssp -TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGG
T ss_pred -CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEECCC
Confidence 55666666543 34578999999999988877788999999965 55565553 344568999999999977777788
Q ss_pred CeEEEEECCCCeEEEEeecC--CCCeEEEEEccCCCCEEEEEeCCC-cEEEEEcCCCCceEEEeec-cCCCEEEEEEcCC
Q 005096 334 QIIKLYDIRAMKELESFRGH--RKDVTALAWHPFHEEYFVSGSLDG-SIFHWLVGHETPQVEIHNV-HDNTVWDLAWHPI 409 (715)
Q Consensus 334 g~I~iwDl~t~~~~~~~~~h--~~~V~~l~~sp~~~~~l~sgs~DG-~I~iwd~~~~~~~~~~~~~-h~~~V~~l~~spd 409 (715)
+.|++||.. ++.+..+... ...+..|++++ +++++++...++ .|.+||.+. ..+..+... ....+.+++++++
T Consensus 185 ~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~-~G~l~v~~~~~~~~i~~~~~~g-~~~~~~~~~~~~~~~~~i~~~~~ 261 (286)
T 1q7f_A 185 HCVKVFNYE-GQYLRQIGGEGITNYPIGVGINS-NGEILIADNHNNFNLTIFTQDG-QLISALESKVKHAQCFDVALMDD 261 (286)
T ss_dssp TEEEEEETT-CCEEEEESCTTTSCSEEEEEECT-TCCEEEEECSSSCEEEEECTTS-CEEEEEEESSCCSCEEEEEEETT
T ss_pred CEEEEEcCC-CCEEEEEccCCccCCCcEEEECC-CCCEEEEeCCCCEEEEEECCCC-CEEEEEcccCCCCcceeEEECCC
Confidence 999999974 5666666543 36789999998 678888887776 999999643 333233221 2234789999999
Q ss_pred CCEEEEEECCCeEEEEecCC
Q 005096 410 GYLLCSGSNDHTTKFWCRNR 429 (715)
Q Consensus 410 g~~L~sgs~Dg~I~iWdl~~ 429 (715)
|+++++ +.|++|++|++..
T Consensus 262 g~l~vs-~~~~~v~v~~~~~ 280 (286)
T 1q7f_A 262 GSVVLA-SKDYRLYIYRYVQ 280 (286)
T ss_dssp TEEEEE-ETTTEEEEEECSC
T ss_pred CcEEEE-CCCCeEEEEEccc
Confidence 987776 6799999999854
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.77 E-value=6.4e-17 Score=174.75 Aligned_cols=259 Identities=11% Similarity=-0.005 Sum_probs=184.4
Q ss_pred EEEeCCCCceEEEEeccCCCEEE-----EEEcCCCCEEEEEeC-CCc--EEEEeCCCCceeeeecCCCCCeEEEEEecCC
Q 005096 169 TLWNGQSFNFEMILQAHDHAIRS-----MVWSHNDNWMVSGDD-GGA--IKYWQNNMNNVKANKSAHKESVRDLSFCRTD 240 (715)
Q Consensus 169 ~Iwd~~~~~~~~~l~~h~~~V~~-----l~~spdg~~L~tgs~-dg~--I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~ 240 (715)
..+|..++..+..+..|...+.. .+|++|+++|++++. ++. |.+||+.+++.......+...+..++|++|+
T Consensus 13 ~~~~~~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg 92 (388)
T 3pe7_A 13 TYQDASTGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDD 92 (388)
T ss_dssp EEECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTS
T ss_pred EEecCCCCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCC
Confidence 34577788888888888877776 889999999988877 663 8888999888877776666666678899999
Q ss_pred CEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEE--EcCCCCEEEEEe----------------------CCCcEEE
Q 005096 241 LKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVD--WHPTKSLLVSGG----------------------KDSLVKL 296 (715)
Q Consensus 241 ~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~--~spdg~~L~sgs----------------------~Dg~I~i 296 (715)
+.|+.++.++.|++||+.+++....+..+...+.... +++++++|+... .+..|++
T Consensus 93 ~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 172 (388)
T 3pe7_A 93 DALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMR 172 (388)
T ss_dssp SEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEE
T ss_pred CEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEE
Confidence 9999999999999999999887776666665554444 489999887432 3467999
Q ss_pred EECCCCceeEEeccCCCceEEEEEcC-CCCEEEEEECC------CeEEEEECCCCeEEEEeecCC--CCeEEEEEccCCC
Q 005096 297 WDAKSGRELCSFHGHKNMVLCVKWNQ-NGNWVLTASKD------QIIKLYDIRAMKELESFRGHR--KDVTALAWHPFHE 367 (715)
Q Consensus 297 wDl~s~~~~~~~~~~~~~I~sl~~sp-dg~~Lasgs~d------g~I~iwDl~t~~~~~~~~~h~--~~V~~l~~sp~~~ 367 (715)
||+.+++... +..+...+..++|+| |+++|+.+..+ ..|.++|+..++ +..+..+. ..+..++|+|++.
T Consensus 173 ~d~~~g~~~~-l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~~~~spdg~ 250 (388)
T 3pe7_A 173 VDLKTGESTV-ILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTN-MRKVKTHAEGESCTHEFWVPDGS 250 (388)
T ss_dssp EETTTCCEEE-EEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCC-CEESCCCCTTEEEEEEEECTTSS
T ss_pred EECCCCceEE-eecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCc-eEEeeeCCCCcccccceECCCCC
Confidence 9999886544 444667799999999 99999887753 378888887544 34444343 3578899999444
Q ss_pred CEEEEEeCCC----cEEEEEcCCCCceEEEe-eccCCC---EEEEEEcCCCCEEEEE---------ECCCeEEEEecCC
Q 005096 368 EYFVSGSLDG----SIFHWLVGHETPQVEIH-NVHDNT---VWDLAWHPIGYLLCSG---------SNDHTTKFWCRNR 429 (715)
Q Consensus 368 ~~l~sgs~DG----~I~iwd~~~~~~~~~~~-~~h~~~---V~~l~~spdg~~L~sg---------s~Dg~I~iWdl~~ 429 (715)
.++++...++ .|++||+.++....... ..+... ...++|++||+.|+.. ..+..|++||++.
T Consensus 251 ~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~ 329 (388)
T 3pe7_A 251 ALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKN 329 (388)
T ss_dssp CEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTT
T ss_pred EEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccC
Confidence 4444444332 39999998776422211 110000 1123689999877754 4566899999865
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=3.4e-16 Score=166.46 Aligned_cols=241 Identities=12% Similarity=0.071 Sum_probs=185.7
Q ss_pred CCCEEEEEEcCCCCEEEEEeCC------------------------CcEEEEeCCCCceeeeec-CCCCCeEEEEEecCC
Q 005096 186 DHAIRSMVWSHNDNWMVSGDDG------------------------GAIKYWQNNMNNVKANKS-AHKESVRDLSFCRTD 240 (715)
Q Consensus 186 ~~~V~~l~~spdg~~L~tgs~d------------------------g~I~iwd~~~~~~~~~~~-~h~~~I~~l~~spd~ 240 (715)
-+.+.+|+++++++++++...+ +.|.+||.+++++...+. .+......|++++++
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g 102 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG 102 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence 3678999999999998887776 479999998888766553 344578999999999
Q ss_pred CEEEEEECCCcEEEEECCCCe-eEEEe---------cccCCceEEEEEcC-CCCEEEEEe-CCCcEEEEECCCCceeEEe
Q 005096 241 LKFCSCSDDTTVKVWDFARCQ-EERSL---------TGHGWDVKSVDWHP-TKSLLVSGG-KDSLVKLWDAKSGRELCSF 308 (715)
Q Consensus 241 ~~Las~s~Dg~V~iwdl~~~~-~~~~l---------~~~~~~I~si~~sp-dg~~L~sgs-~Dg~I~iwDl~s~~~~~~~ 308 (715)
+++++...++.|++||.+... .+..+ ..+......|++++ +++++++.+ .++.|++|| .+++.+..+
T Consensus 103 ~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~ 181 (329)
T 3fvz_A 103 NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQW 181 (329)
T ss_dssp CEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEE
T ss_pred CEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEe
Confidence 988888889999999986542 44444 23344688999999 788777776 689999999 557777666
Q ss_pred ccC----------CCceEEEEEcCC-CCEEEEEECCCeEEEEECCCCeEEEEee--cCCCCeEEEEEccCCCCEEEEEe-
Q 005096 309 HGH----------KNMVLCVKWNQN-GNWVLTASKDQIIKLYDIRAMKELESFR--GHRKDVTALAWHPFHEEYFVSGS- 374 (715)
Q Consensus 309 ~~~----------~~~I~sl~~spd-g~~Lasgs~dg~I~iwDl~t~~~~~~~~--~h~~~V~~l~~sp~~~~~l~sgs- 374 (715)
... -.....|+++++ ++++++...++.|++||..+++.+..+. .+...+.+++++| +.++++.+
T Consensus 182 ~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p--g~~~~~~g~ 259 (329)
T 3fvz_A 182 GEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP--GFLFAVNGK 259 (329)
T ss_dssp CEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET--TEEEEEECC
T ss_pred ccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC--CEEEEeCCC
Confidence 422 234889999998 6666666788899999999899888874 4556788999987 33333332
Q ss_pred ------CCCcEEEEEcCCCCceEEEe--eccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCC
Q 005096 375 ------LDGSIFHWLVGHETPQVEIH--NVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNR 429 (715)
Q Consensus 375 ------~DG~I~iwd~~~~~~~~~~~--~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~ 429 (715)
.+..|++||..++..+..+. ..+...+.+|+++++|.++++...++.|++|+++.
T Consensus 260 ~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 260 PYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp CCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred EEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence 34589999998876554442 34566799999999998888888999999999864
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.77 E-value=2.2e-16 Score=170.45 Aligned_cols=255 Identities=10% Similarity=0.064 Sum_probs=186.2
Q ss_pred EEEEcCCCCEEEEEeC----------CCeEEEEeCCCCceEEEEecc------CCCEEEEEEcCCCCEEEEEeC--CCcE
Q 005096 149 RVLWTPTGRRLITGSQ----------SGEFTLWNGQSFNFEMILQAH------DHAIRSMVWSHNDNWMVSGDD--GGAI 210 (715)
Q Consensus 149 ~l~~spdg~~Latgs~----------dg~I~Iwd~~~~~~~~~l~~h------~~~V~~l~~spdg~~L~tgs~--dg~I 210 (715)
.++|++|+++|++++. ++.|.+||..+++.+..+... ......++|++|+++|+++.. ++.|
T Consensus 54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v 133 (361)
T 2oiz_A 54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSI 133 (361)
T ss_dssp EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEE
T ss_pred ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeE
Confidence 8999999999998873 567999999999988887643 234667999999999998864 5899
Q ss_pred EEEeCCCCceeee-ecCCCCCeEEEEEecCC-CEEEEEECCCcEEEEECCC-CeeEEE------ecccCCceEEEEEcCC
Q 005096 211 KYWQNNMNNVKAN-KSAHKESVRDLSFCRTD-LKFCSCSDDTTVKVWDFAR-CQEERS------LTGHGWDVKSVDWHPT 281 (715)
Q Consensus 211 ~iwd~~~~~~~~~-~~~h~~~I~~l~~spd~-~~Las~s~Dg~V~iwdl~~-~~~~~~------l~~~~~~I~si~~spd 281 (715)
.+||+.+++.+.. +... ....+.+.+++ ..+++.+.||.+.+|+++. ++.... +...... ..+.++++
T Consensus 134 ~v~d~~~~~~~~~~i~~~--~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~ 210 (361)
T 2oiz_A 134 GIVDVAKGDYVEDVTAAA--GCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDP-IFIAPALD 210 (361)
T ss_dssp EEEETTTTEEEEEEGGGT--TEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSC-BCSCCEEC
T ss_pred EEEECCCCcEEEEEecCC--CcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCc-eEEEeccc
Confidence 9999999988766 4322 22335566665 6788889999999999865 444311 1111111 12334566
Q ss_pred CCEEEEEeCCCcEEEEECCCCcee--EEeccC------C----CceEEEEEcCCCCEEEEEEC-----------CCeEEE
Q 005096 282 KSLLVSGGKDSLVKLWDAKSGREL--CSFHGH------K----NMVLCVKWNQNGNWVLTASK-----------DQIIKL 338 (715)
Q Consensus 282 g~~L~sgs~Dg~I~iwDl~s~~~~--~~~~~~------~----~~I~sl~~spdg~~Lasgs~-----------dg~I~i 338 (715)
+..++..+.++.|.++|+...+.. ..+... . .....++|+++++.++++.. ++.|.+
T Consensus 211 g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~v 290 (361)
T 2oiz_A 211 KDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWV 290 (361)
T ss_dssp SSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEE
T ss_pred CCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEE
Confidence 777777888999999999755422 222110 0 11112789999888887653 348999
Q ss_pred EECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCC--CceEEEeeccCCCEEEEEEcCCCC
Q 005096 339 YDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHE--TPQVEIHNVHDNTVWDLAWHPIGY 411 (715)
Q Consensus 339 wDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~--~~~~~~~~~h~~~V~~l~~spdg~ 411 (715)
||+.+++.+.++..+. +.+|+|++ ++++|++++. +.|.+||..+. +.+..+ .........++++|+|.
T Consensus 291 iD~~t~~~v~~i~~~~--p~~ia~sp-dg~~l~v~n~-~~v~v~D~~t~~l~~~~~i-~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 291 MDTKTKQRVARIPGRD--ALSMTIDQ-QRNLMLTLDG-GNVNVYDISQPEPKLLRTI-EGAAEASLQVQFHPVGG 360 (361)
T ss_dssp EETTTTEEEEEEECTT--CCEEEEET-TTTEEEEECS-SCEEEEECSSSSCEEEEEE-TTSCSSEEEEEECCCSC
T ss_pred EECCCCcEEEEEecCC--eeEEEECC-CCCEEEEeCC-CeEEEEECCCCcceeeEEe-ccCCCCcEEEEecCCCC
Confidence 9999999999998877 99999999 6778887776 99999999887 544333 24566788999999975
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.77 E-value=8.7e-17 Score=173.60 Aligned_cols=267 Identities=9% Similarity=0.024 Sum_probs=190.9
Q ss_pred CCCEEEEEe------CCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeC----------CCcEEEEeCCCC
Q 005096 155 TGRRLITGS------QSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDD----------GGAIKYWQNNMN 218 (715)
Q Consensus 155 dg~~Latgs------~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~----------dg~I~iwd~~~~ 218 (715)
+++++++.. .|+.|++||..+++.+..+..+... .++|++|+++|++++. ++.|.+||..+.
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~ 91 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKL 91 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTC
T ss_pred CCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCC
Confidence 556666654 3679999999999998888776544 8999999999988763 577999999988
Q ss_pred ceeeeecCC------CCCeEEEEEecCCCEEEEEEC--CCcEEEEECCCCeeEEE-ecccCCceEEEEEcCCC-CEEEEE
Q 005096 219 NVKANKSAH------KESVRDLSFCRTDLKFCSCSD--DTTVKVWDFARCQEERS-LTGHGWDVKSVDWHPTK-SLLVSG 288 (715)
Q Consensus 219 ~~~~~~~~h------~~~I~~l~~spd~~~Las~s~--Dg~V~iwdl~~~~~~~~-l~~~~~~I~si~~spdg-~~L~sg 288 (715)
+.+..+... ......+++++|+++|+++.. +++|.+||+++.+.+.. +... ....+.+.+++ ..+++.
T Consensus 92 ~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~--~~~~v~~~p~~~~~~~~~ 169 (361)
T 2oiz_A 92 TFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAA--GCWSVIPQPNRPRSFMTI 169 (361)
T ss_dssp CEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGT--TEEEEEECTTSSSEEEEE
T ss_pred cEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCC--CcceeEEcCCCCeeEEEE
Confidence 877766432 345678999999999998874 58999999999988877 5432 22335677765 578888
Q ss_pred eCCCcEEEEECCC-CceeEE------eccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCe--EEEEeecCC-----
Q 005096 289 GKDSLVKLWDAKS-GRELCS------FHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMK--ELESFRGHR----- 354 (715)
Q Consensus 289 s~Dg~I~iwDl~s-~~~~~~------~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~--~~~~~~~h~----- 354 (715)
+.||.+.+|+++. ++.... +...... ..+.+++++..++..+.++.|.++|+.... .+..+....
T Consensus 170 ~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~ 248 (361)
T 2oiz_A 170 CGDGGLLTINLGEDGKVASQSRSKQMFSVKDDP-IFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKA 248 (361)
T ss_dssp ETTSSEEEEEECTTSSEEEEEECCCCSCTTTSC-BCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHH
T ss_pred CCCCcEEEEEECCCCcEeeeccccceEcCCCCc-eEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccc
Confidence 9999999999875 554412 1111222 123345677778888889999999997543 222222111
Q ss_pred -----CCeEEEEEccCCCCEEEEEe----------CCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECC
Q 005096 355 -----KDVTALAWHPFHEEYFVSGS----------LDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSND 419 (715)
Q Consensus 355 -----~~V~~l~~sp~~~~~l~sgs----------~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~D 419 (715)
.....++++++++.++++.. .++.|.+||+.+.+.+..+.. +. +++++|++||++|++++.
T Consensus 249 ~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~-~~--p~~ia~spdg~~l~v~n~- 324 (361)
T 2oiz_A 249 KNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPG-RD--ALSMTIDQQRNLMLTLDG- 324 (361)
T ss_dssp TTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEEC-TT--CCEEEEETTTTEEEEECS-
T ss_pred cccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEec-CC--eeEEEECCCCCEEEEeCC-
Confidence 11223788994455555444 134799999988876655543 34 999999999999998886
Q ss_pred CeEEEEecCCC
Q 005096 420 HTTKFWCRNRP 430 (715)
Q Consensus 420 g~I~iWdl~~~ 430 (715)
+.|.+||....
T Consensus 325 ~~v~v~D~~t~ 335 (361)
T 2oiz_A 325 GNVNVYDISQP 335 (361)
T ss_dssp SCEEEEECSSS
T ss_pred CeEEEEECCCC
Confidence 99999998653
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.7e-16 Score=186.65 Aligned_cols=274 Identities=7% Similarity=-0.040 Sum_probs=190.1
Q ss_pred CCCCEEEEEeCC-----CeEEEEeCCCCceEEEEe------ccCCCEEEEEEcCCCCEEEEEeCCC-----cEEEEeCCC
Q 005096 154 PTGRRLITGSQS-----GEFTLWNGQSFNFEMILQ------AHDHAIRSMVWSHNDNWMVSGDDGG-----AIKYWQNNM 217 (715)
Q Consensus 154 pdg~~Latgs~d-----g~I~Iwd~~~~~~~~~l~------~h~~~V~~l~~spdg~~L~tgs~dg-----~I~iwd~~~ 217 (715)
+||++++....+ +.|++.+...++....+. .+...+..++||+||++|+.+..++ .|++||+.+
T Consensus 81 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~t 160 (710)
T 2xdw_A 81 KKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDG 160 (710)
T ss_dssp EETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTT
T ss_pred EECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCC
Confidence 678877765433 245555655554443332 2334688999999999998765433 899999999
Q ss_pred CceeeeecCCCCCeEEEEEecCCCEEEEEECCCc----------------EEEEECCCCeeE--EEecc--cCCceEEEE
Q 005096 218 NNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTT----------------VKVWDFARCQEE--RSLTG--HGWDVKSVD 277 (715)
Q Consensus 218 ~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~----------------V~iwdl~~~~~~--~~l~~--~~~~I~si~ 277 (715)
++....... ...+..++|++|++.|+.++.++. |++|++.++... ..+.. +...+..++
T Consensus 161 g~~~~~~~~-~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~ 239 (710)
T 2xdw_A 161 AKELPDVLE-RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAE 239 (710)
T ss_dssp TEEEEEEEE-EECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEE
T ss_pred CCCCccccc-CcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEE
Confidence 887653322 223678999999999999988766 999999876522 22222 345578999
Q ss_pred EcCCCCEEEEEeC-----CCcEEEEECCC------Cc-eeEEeccCCCceEEEEEcCCCCEEEEEECC----CeEEEEEC
Q 005096 278 WHPTKSLLVSGGK-----DSLVKLWDAKS------GR-ELCSFHGHKNMVLCVKWNQNGNWVLTASKD----QIIKLYDI 341 (715)
Q Consensus 278 ~spdg~~L~sgs~-----Dg~I~iwDl~s------~~-~~~~~~~~~~~I~sl~~spdg~~Lasgs~d----g~I~iwDl 341 (715)
|++|+++|++++. +..|++||+.+ ++ .+..+..+...+.. .|+++|+.|+..+.+ +.|.+||+
T Consensus 240 ~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~ 318 (710)
T 2xdw_A 240 LSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDF 318 (710)
T ss_dssp ECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEET
T ss_pred EcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeC
Confidence 9999999888765 56899999986 43 35556555555554 488899988877653 36999999
Q ss_pred CCCe--EEEEeecCCC--CeEEEEEccCCCCEEEEEeCCCc--EEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEE
Q 005096 342 RAMK--ELESFRGHRK--DVTALAWHPFHEEYFVSGSLDGS--IFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCS 415 (715)
Q Consensus 342 ~t~~--~~~~~~~h~~--~V~~l~~sp~~~~~l~sgs~DG~--I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~s 415 (715)
.++. ....+..+.. .+..++|++ ++.++++...|+. |++||+.++..... +..+.+.|..+++++++..|+.
T Consensus 319 ~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~lv~~~~~~g~~~l~~~~~~~g~~~~~-l~~~~~~v~~~~~s~d~~~l~~ 396 (710)
T 2xdw_A 319 TDPEESKWKVLVPEHEKDVLEWVACVR-SNFLVLCYLHDVKNTLQLHDLATGALLKI-FPLEVGSVVGYSGQKKDTEIFY 396 (710)
T ss_dssp TSCCGGGCEEEECCCSSCEEEEEEEET-TTEEEEEEEETTEEEEEEEETTTCCEEEE-ECCCSSEEEEEECCTTCSEEEE
T ss_pred CCCCcccceeccCCCCCCeEEEEEEEc-CCEEEEEEEECCEEEEEEEECCCCCEEEe-cCCCCceEEEEecCCCCCEEEE
Confidence 8764 2344444443 688899985 7788888888885 55566645543333 3445778899999999876654
Q ss_pred E-E---CCCeEEEEecCCCC
Q 005096 416 G-S---NDHTTKFWCRNRPG 431 (715)
Q Consensus 416 g-s---~Dg~I~iWdl~~~~ 431 (715)
. + ..++|++||+....
T Consensus 397 ~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 397 QFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEECSSCCCEEEEEETTSSS
T ss_pred EEeCCCCCCEEEEEECCCCc
Confidence 3 3 24789999986544
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.77 E-value=2e-17 Score=192.60 Aligned_cols=272 Identities=12% Similarity=0.026 Sum_probs=180.3
Q ss_pred EEEEc--CCCCE-EEEEeC-CCeEEEEeCC--C-CceEEEEec-----cCCCEEEEEEcCCCCEEEEEeCC---------
Q 005096 149 RVLWT--PTGRR-LITGSQ-SGEFTLWNGQ--S-FNFEMILQA-----HDHAIRSMVWSHNDNWMVSGDDG--------- 207 (715)
Q Consensus 149 ~l~~s--pdg~~-Latgs~-dg~I~Iwd~~--~-~~~~~~l~~-----h~~~V~~l~~spdg~~L~tgs~d--------- 207 (715)
...|+ |||++ |+.++. +..|++|++. . + ....+.. |...+.+++|++||++|++++.+
T Consensus 81 ~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~-~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~ 159 (662)
T 3azo_A 81 PWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGA-VPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDV 159 (662)
T ss_dssp CEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCC-CCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCE
T ss_pred cceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCC-CCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCc
Confidence 44454 99998 776654 5678888876 3 3 3445555 56778999999999999988776
Q ss_pred -CcEEEEeCCC------Cceeeeec-CCCCCeEEEEEecCCCEEEEEECC--------CcEEEEECC-CC---eeEEEec
Q 005096 208 -GAIKYWQNNM------NNVKANKS-AHKESVRDLSFCRTDLKFCSCSDD--------TTVKVWDFA-RC---QEERSLT 267 (715)
Q Consensus 208 -g~I~iwd~~~------~~~~~~~~-~h~~~I~~l~~spd~~~Las~s~D--------g~V~iwdl~-~~---~~~~~l~ 267 (715)
..|++||+.+ ++.. .+. .+...+..++|++|+++|+.++.+ ..|++||++ ++ +......
T Consensus 160 ~~~i~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~ 238 (662)
T 3azo_A 160 RRFLAAVPLDGSAAADRSAVR-ELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLG 238 (662)
T ss_dssp EEEEEEEETTSTTTTCGGGSE-ESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEE
T ss_pred eeEEEEEECCCCccccCCcee-EEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCC
Confidence 5899999988 5544 344 555678889999999999988754 379999998 56 4444444
Q ss_pred ccCCceEEEEEcCCCCEEEEEeCCC--cEEEEECCCCceeEEeccCCCc--------eEEEEEcCCCCEEEEEECCCeEE
Q 005096 268 GHGWDVKSVDWHPTKSLLVSGGKDS--LVKLWDAKSGRELCSFHGHKNM--------VLCVKWNQNGNWVLTASKDQIIK 337 (715)
Q Consensus 268 ~~~~~I~si~~spdg~~L~sgs~Dg--~I~iwDl~s~~~~~~~~~~~~~--------I~sl~~spdg~~Lasgs~dg~I~ 337 (715)
.+...+..++|++||++++++..++ .|.+||+++++....+..+... +.+++|+++++++++++. +.++
T Consensus 239 ~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~ 317 (662)
T 3azo_A 239 GPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAV 317 (662)
T ss_dssp ETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCE
T ss_pred CCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccE
Confidence 4578899999999999888888888 6667777666644333322221 567899999999999988 9989
Q ss_pred EE--ECCCCeEEEEeecCCCCeEEE-EEccCCCCEE-EEEeCCCc--EEEEEcCCCCceEEEeeccCCCEEEEEEcCCCC
Q 005096 338 LY--DIRAMKELESFRGHRKDVTAL-AWHPFHEEYF-VSGSLDGS--IFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGY 411 (715)
Q Consensus 338 iw--Dl~t~~~~~~~~~h~~~V~~l-~~sp~~~~~l-~sgs~DG~--I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~ 411 (715)
|| |+.+++ +..+..+...+..+ +++ ++.++ ++++.+.. |++||+.++.. ..+...+...+....+.....
T Consensus 318 l~~~d~~~~~-~~~l~~~~~~~~~~~s~~--~~~~~~~~~~~~~~~~i~~~d~~~g~~-~~l~~~~~~~~~~~~~~~~~~ 393 (662)
T 3azo_A 318 LGILDPESGE-LVDAAGPWTEWAATLTVS--GTRAVGVAASPRTAYEVVELDTVTGRA-RTIGARHTDPVDPAYYPEPQI 393 (662)
T ss_dssp EEEEETTTTE-EEECCSSCCEEEEEEEEE--TTEEEEEEEETTEEEEEEEEETTTCCE-EEEESCCCCSSCGGGSCCCEE
T ss_pred EEEEECCCCc-EEEecCCCCeEEEEEecC--CCEEEEEEcCCCCCCEEEEEECCCCce-EEeecCCcccCCccccCcceE
Confidence 98 665555 67777777778777 554 34444 44455544 44455545432 233333333332222332233
Q ss_pred EEEEEECCCeEEEEec
Q 005096 412 LLCSGSNDHTTKFWCR 427 (715)
Q Consensus 412 ~L~sgs~Dg~I~iWdl 427 (715)
+.+....+..|..|-+
T Consensus 394 ~~~~~~dg~~i~~~~~ 409 (662)
T 3azo_A 394 RTFTAPDGREIHAHIY 409 (662)
T ss_dssp EEEECTTSCEEEEEEE
T ss_pred EEEEcCCCCEEEEEEE
Confidence 3333333345666654
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.75 E-value=4.3e-17 Score=191.36 Aligned_cols=273 Identities=7% Similarity=-0.110 Sum_probs=184.1
Q ss_pred CCCCEEEEEeCCC-----eEEEEeCCCCceEEEEe------ccCCCEEEEEEcCCCCEEEEE-----eCCCcEEEEeCCC
Q 005096 154 PTGRRLITGSQSG-----EFTLWNGQSFNFEMILQ------AHDHAIRSMVWSHNDNWMVSG-----DDGGAIKYWQNNM 217 (715)
Q Consensus 154 pdg~~Latgs~dg-----~I~Iwd~~~~~~~~~l~------~h~~~V~~l~~spdg~~L~tg-----s~dg~I~iwd~~~ 217 (715)
++|++++....++ .|++.+...++....+. +|...+.+++||+||++|+.+ +.+..|++||+++
T Consensus 77 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~t 156 (695)
T 2bkl_A 77 RRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDS 156 (695)
T ss_dssp EETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTT
T ss_pred EECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCC
Confidence 6888888766543 34555555555444443 244468999999999999843 3346899999999
Q ss_pred CceeeeecCCCCCeEEEEEecCCCEEEEEECCCc-------------EEEEECCCCee----EEEecccCCceEEEEEcC
Q 005096 218 NNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTT-------------VKVWDFARCQE----ERSLTGHGWDVKSVDWHP 280 (715)
Q Consensus 218 ~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~-------------V~iwdl~~~~~----~~~l~~~~~~I~si~~sp 280 (715)
++.+............++|++|++.|+.++.|.. |++|++.++.. +.....+...+.++.|++
T Consensus 157 g~~~~~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~Sp 236 (695)
T 2bkl_A 157 GEWSKVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSR 236 (695)
T ss_dssp CCBCSSCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECT
T ss_pred CCCcCCcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECC
Confidence 8764111111112268999999999999998776 99999987652 222233445788999999
Q ss_pred CCCEEEEEeCCC----cEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEEC----CCeEEEEECCCCeE--EEEe
Q 005096 281 TKSLLVSGGKDS----LVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASK----DQIIKLYDIRAMKE--LESF 350 (715)
Q Consensus 281 dg~~L~sgs~Dg----~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~----dg~I~iwDl~t~~~--~~~~ 350 (715)
||++|++++.++ .|++||..+++ ...+..+...+....| ++++ |+..+. ++.|.+||+.+++. ...+
T Consensus 237 DG~~l~~~~~~~~~~~~l~~~~~~~~~-~~~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l 313 (695)
T 2bkl_A 237 DGKYLFVYILRGWSENDVYWKRPGEKD-FRLLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEI 313 (695)
T ss_dssp TSCCEEEEEEETTTEEEEEEECTTCSS-CEEEEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEE
T ss_pred CCCEEEEEEeCCCCceEEEEEcCCCCc-eEEeecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEE
Confidence 999888877665 67777766554 3444445555666666 5666 554443 57899999987653 2333
Q ss_pred ecC--CCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeecc-CCCEEEEEEcCCCCEEEEEE----CCCeEE
Q 005096 351 RGH--RKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVH-DNTVWDLAWHPIGYLLCSGS----NDHTTK 423 (715)
Q Consensus 351 ~~h--~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h-~~~V~~l~~spdg~~L~sgs----~Dg~I~ 423 (715)
..+ ...|..++|+ ++.++++...|+..+||.++........+..+ .+.|..+++++++..|+... ..++|+
T Consensus 314 ~~~~~~~~l~~~~~~--~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~ 391 (695)
T 2bkl_A 314 VPEDSSASLLSVSIV--GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIY 391 (695)
T ss_dssp ECCCSSCEEEEEEEE--TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEE
T ss_pred ecCCCCCeEEEEEEE--CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEE
Confidence 333 4557888887 67888999999998888765333233333333 56788889999987666333 247899
Q ss_pred EEecCCCC
Q 005096 424 FWCRNRPG 431 (715)
Q Consensus 424 iWdl~~~~ 431 (715)
+||+....
T Consensus 392 ~~d~~~g~ 399 (695)
T 2bkl_A 392 KTSVSTGK 399 (695)
T ss_dssp EEETTTCC
T ss_pred EEECCCCc
Confidence 99986543
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=2e-16 Score=186.08 Aligned_cols=245 Identities=11% Similarity=0.027 Sum_probs=180.1
Q ss_pred CCCccEEEEEEcCCCCEEEEEeCCC-----eEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCc-------
Q 005096 142 KNRCSINRVLWTPTGRRLITGSQSG-----EFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGA------- 209 (715)
Q Consensus 142 ~H~~~I~~l~~spdg~~Latgs~dg-----~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~------- 209 (715)
+|...+.+++|||||++||.+..++ .|+|||+.+++.+.....+ ..+..++|++|++.|+.++.++.
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~ 200 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGT 200 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSS
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEeCCCEEEEEEECCcccccccc
Confidence 4555789999999999999776543 8999999998877643322 23668999999999998887765
Q ss_pred ---------EEEEeCCCCce----eeeecCCCCCeEEEEEecCCCEEEEEEC-----CCcEEEEECCC------Ce-eEE
Q 005096 210 ---------IKYWQNNMNNV----KANKSAHKESVRDLSFCRTDLKFCSCSD-----DTTVKVWDFAR------CQ-EER 264 (715)
Q Consensus 210 ---------I~iwd~~~~~~----~~~~~~h~~~I~~l~~spd~~~Las~s~-----Dg~V~iwdl~~------~~-~~~ 264 (715)
|++|++.++.. +.....+...+..+.|++|+++|+.++. +..|++||+.+ +. ...
T Consensus 201 ~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~ 280 (710)
T 2xdw_A 201 ETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWV 280 (710)
T ss_dssp CCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCE
T ss_pred ccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceE
Confidence 99999988652 2222234556889999999999888765 56899999976 42 355
Q ss_pred EecccCCceEEEEEcCCCCEEEEEeCC----CcEEEEECCCCc--eeEEeccCCC--ceEEEEEcCCCCEEEEEECCC--
Q 005096 265 SLTGHGWDVKSVDWHPTKSLLVSGGKD----SLVKLWDAKSGR--ELCSFHGHKN--MVLCVKWNQNGNWVLTASKDQ-- 334 (715)
Q Consensus 265 ~l~~~~~~I~si~~spdg~~L~sgs~D----g~I~iwDl~s~~--~~~~~~~~~~--~I~sl~~spdg~~Lasgs~dg-- 334 (715)
.+..+...+.. .|+++++.|+..+.+ ..|.+||+.++. ....+..+.. .+..++|++++.++++...|+
T Consensus 281 ~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~ 359 (710)
T 2xdw_A 281 KLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKN 359 (710)
T ss_dssp EEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEE
T ss_pred EeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEE
Confidence 55555555554 478889887776653 359999998764 2344443433 688899997777788888887
Q ss_pred eEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeC---CCcEEEEEcCCCC
Q 005096 335 IIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSL---DGSIFHWLVGHET 388 (715)
Q Consensus 335 ~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~---DG~I~iwd~~~~~ 388 (715)
.|++||+.+++.+..+..+...|..+++++++..++++.+. .++|++||+.++.
T Consensus 360 ~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 360 TLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 46677887788778888777788999999844445555443 4689999998765
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.75 E-value=4.5e-16 Score=165.48 Aligned_cols=223 Identities=10% Similarity=0.075 Sum_probs=160.8
Q ss_pred ccEEEEEEcCCCCEEEEEeCC---C--eEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCC------------
Q 005096 145 CSINRVLWTPTGRRLITGSQS---G--EFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDG------------ 207 (715)
Q Consensus 145 ~~I~~l~~spdg~~Latgs~d---g--~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~d------------ 207 (715)
..+.+++|||||++|++++.+ + .|++||+.+++........ . +.+++|++|++.|+.++.+
T Consensus 59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~-~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~ 136 (347)
T 2gop_A 59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK-N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDD 136 (347)
T ss_dssp ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES-E-EEEEEECTTSSEEEEEEECCCC---------
T ss_pred ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC-C-ccceeECCCCCEEEEEEccCCCcCCcEEEcc
Confidence 357889999999999987754 3 4888899887766555543 3 9999999999998877632
Q ss_pred ---------------CcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCC-------cEEEEECCCCeeEEE
Q 005096 208 ---------------GAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDT-------TVKVWDFARCQEERS 265 (715)
Q Consensus 208 ---------------g~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg-------~V~iwdl~~~~~~~~ 265 (715)
..|.+||+.+++.+..+.. . .+..++|++|+ +++++..+. ...||.+.+++. ..
T Consensus 137 ~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~-~~ 212 (347)
T 2gop_A 137 VPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKE-EK 212 (347)
T ss_dssp CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEE-EE
T ss_pred cceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCce-EE
Confidence 5689999988876344444 3 88899999999 777776542 334444444443 33
Q ss_pred ecccCCceEEEEEcCCCCEEEEEeCC--------CcEEEEECCCCceeEEeccCCCceEE-EEEcCCCCEEEEEECCCeE
Q 005096 266 LTGHGWDVKSVDWHPTKSLLVSGGKD--------SLVKLWDAKSGRELCSFHGHKNMVLC-VKWNQNGNWVLTASKDQII 336 (715)
Q Consensus 266 l~~~~~~I~si~~spdg~~L~sgs~D--------g~I~iwDl~s~~~~~~~~~~~~~I~s-l~~spdg~~Lasgs~dg~I 336 (715)
+..+ ..+.++ ++||++|++++.+ ..|.+|| +++....+..+...+.. +.|+ |+ ++++++.++.+
T Consensus 213 l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~ 285 (347)
T 2gop_A 213 MFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSV 285 (347)
T ss_dssp EEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEE
T ss_pred eccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc-EEEEEecCCcE
Confidence 4334 445444 8999988877754 3688888 55544444555677886 9999 88 88899999999
Q ss_pred EEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcE-EEEEcC
Q 005096 337 KLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSI-FHWLVG 385 (715)
Q Consensus 337 ~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I-~iwd~~ 385 (715)
+|| +.+++. ..+..+...|.+++|++ .++++++.++.. .||.++
T Consensus 286 ~l~-~~~g~~-~~~~~~~~~v~~~~~s~---~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 286 NLY-IWDGEI-KPIAKGRHWIMGFDVDE---IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp EEE-EESSSE-EEEECSSSEEEEEEESS---SEEEEEECSSSCCEEEEES
T ss_pred EEE-EcCCce-EEEecCCCeEEeeeeeC---cEEEEEcCCCChHHheEeC
Confidence 999 876655 34444577899999987 677777777765 777775
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.75 E-value=8.6e-16 Score=160.16 Aligned_cols=241 Identities=11% Similarity=0.029 Sum_probs=175.2
Q ss_pred CceEEEEeccCCCEEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEE
Q 005096 176 FNFEMILQAHDHAIRSMVWSHNDN-WMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKV 254 (715)
Q Consensus 176 ~~~~~~l~~h~~~V~~l~~spdg~-~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~i 254 (715)
...+..+..+.....+++|+++++ +++++..++.|.+|+..++ ...+..+...+.+++++++++++++...++.|.+
T Consensus 17 ~~~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~ 94 (296)
T 3e5z_A 17 GAEARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLER 94 (296)
T ss_dssp TCCCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEE
T ss_pred CCcEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEE
Confidence 334455556667788999999998 7788888999999999887 4555567778999999999998877777789999
Q ss_pred EECCCCeeEEEeccc----CCceEEEEEcCCCCEEEEEeC-----------------CCcEEEEECCCCceeEEeccCCC
Q 005096 255 WDFARCQEERSLTGH----GWDVKSVDWHPTKSLLVSGGK-----------------DSLVKLWDAKSGRELCSFHGHKN 313 (715)
Q Consensus 255 wdl~~~~~~~~l~~~----~~~I~si~~spdg~~L~sgs~-----------------Dg~I~iwDl~s~~~~~~~~~~~~ 313 (715)
||..+++........ ...+.+++++++|+++++.+. .+.|..||.. ++ +..+..+..
T Consensus 95 ~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~~~~~~ 172 (296)
T 3e5z_A 95 QREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT-LSAPIRDRV 172 (296)
T ss_dssp ECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC-EEEEECCCS
T ss_pred EcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CC-EEEeecCCC
Confidence 999777654433221 234678999999998887321 2456666655 43 444444566
Q ss_pred ceEEEEEcCCCCEEEEEECCCeEEEEECC-CCeE---EEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCc
Q 005096 314 MVLCVKWNQNGNWVLTASKDQIIKLYDIR-AMKE---LESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETP 389 (715)
Q Consensus 314 ~I~sl~~spdg~~Lasgs~dg~I~iwDl~-t~~~---~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~ 389 (715)
....++|++++++|++.+.++.|++||+. +++. ...+..+...+.++++++ +++++++. ++.|.+||.+ +.
T Consensus 173 ~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~-~G~l~v~~--~~~v~~~~~~-g~- 247 (296)
T 3e5z_A 173 KPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDA-GGLIWASA--GDGVHVLTPD-GD- 247 (296)
T ss_dssp SEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBT-TSCEEEEE--TTEEEEECTT-SC-
T ss_pred CCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECC-CCCEEEEc--CCeEEEECCC-CC-
Confidence 78999999999998777778999999997 4544 333333455678899998 66766665 7899999986 33
Q ss_pred eEEEeeccCCCEEEEEE-cCCCCEEEEEECCCeEEEEecCC
Q 005096 390 QVEIHNVHDNTVWDLAW-HPIGYLLCSGSNDHTTKFWCRNR 429 (715)
Q Consensus 390 ~~~~~~~h~~~V~~l~~-spdg~~L~sgs~Dg~I~iWdl~~ 429 (715)
....+..+.. +++++| .++++.|++++.++ +|.++.
T Consensus 248 ~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~---l~~~~~ 284 (296)
T 3e5z_A 248 ELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTE---FWSIET 284 (296)
T ss_dssp EEEEEECSSC-CCEEEEESTTSCEEEEEETTE---EEEEEC
T ss_pred EEEEEECCCC-ceeEEEECCCCCEEEEEcCCe---EEEEEc
Confidence 3344444555 899999 57888888888763 455444
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.73 E-value=3.1e-14 Score=147.35 Aligned_cols=279 Identities=7% Similarity=-0.013 Sum_probs=199.6
Q ss_pred ecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEE-EeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 005096 139 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMI-LQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNM 217 (715)
Q Consensus 139 ~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~-l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~ 217 (715)
.+......+.+|+++++|+++++...++.|.+||.. ++.... +......+.++++.++++++++...++.|.+||..
T Consensus 14 ~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~- 91 (300)
T 2qc5_A 14 NLSIPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK- 91 (300)
T ss_dssp ECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-
T ss_pred ecCCCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-
Confidence 344556789999999999977777778999999988 554432 22234679999999999888777778899999987
Q ss_pred Cceee-eecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEE-EecccCCceEEEEEcCCCCEEEEEeCCCcEE
Q 005096 218 NNVKA-NKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEER-SLTGHGWDVKSVDWHPTKSLLVSGGKDSLVK 295 (715)
Q Consensus 218 ~~~~~-~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~-~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~ 295 (715)
++... ........+.++++.++++++++...++.|..||.. ++... .+......+.+++++++++++++...++.|.
T Consensus 92 g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~ 170 (300)
T 2qc5_A 92 GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIG 170 (300)
T ss_dssp SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEE
T ss_pred CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEE
Confidence 54432 222234678999999999887777768899999987 44432 2333456789999999999766666678899
Q ss_pred EEECCCCceeEE-eccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEE-eecCCCCeEEEEEccCCCCEEEEE
Q 005096 296 LWDAKSGRELCS-FHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELES-FRGHRKDVTALAWHPFHEEYFVSG 373 (715)
Q Consensus 296 iwDl~s~~~~~~-~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~-~~~h~~~V~~l~~sp~~~~~l~sg 373 (715)
+||. +++.... .......+.+++++++++++++...++.|.+||. +++.... +......+.+|++++ +++++++.
T Consensus 171 ~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~ 247 (300)
T 2qc5_A 171 RITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGK-NSEIWFTE 247 (300)
T ss_dssp EECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECS-TTCEEEEE
T ss_pred EECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECC-CCCEEEec
Confidence 9998 4554332 2233456899999999987766666778999998 4544332 334456789999998 56777776
Q ss_pred eCCCcEEEEEcCCCCceEEE-eeccCCCEEEEEEcCCCCEEEEEECCCeEEEEec
Q 005096 374 SLDGSIFHWLVGHETPQVEI-HNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCR 427 (715)
Q Consensus 374 s~DG~I~iwd~~~~~~~~~~-~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl 427 (715)
..++.|.+||.. +. ...+ .......+.+++++++|+++++.. + .|..++.
T Consensus 248 ~~~~~i~~~~~~-g~-~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p 298 (300)
T 2qc5_A 248 WGANQIGRITND-NT-IQEYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKLNL 298 (300)
T ss_dssp TTTTEEEEECTT-SC-EEEEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEEEE
T ss_pred cCCCeEEEECCC-Cc-EEEEECCccCCccceeEeCCCCCEEEEcc-C-ceEEeCC
Confidence 677899999983 32 2222 222345688999999998666554 4 6666654
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.73 E-value=8.5e-16 Score=160.21 Aligned_cols=237 Identities=8% Similarity=0.023 Sum_probs=176.7
Q ss_pred CCCccEEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCce
Q 005096 142 KNRCSINRVLWTPTGR-RLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNV 220 (715)
Q Consensus 142 ~H~~~I~~l~~spdg~-~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~ 220 (715)
.+.....+++|+++++ +++++..++.|++||..++ ...+..+...+.+++++++++++++...++.|.+||..+++.
T Consensus 25 ~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~ 102 (296)
T 3e5z_A 25 DGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEW 102 (296)
T ss_dssp CCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCE
T ss_pred cCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcE
Confidence 4556688999999998 7778888999999999887 666777788899999999999888777778999999977765
Q ss_pred eeeecC----CCCCeEEEEEecCCCEEEEEEC-----------------CCcEEEEECCCCeeEEEecccCCceEEEEEc
Q 005096 221 KANKSA----HKESVRDLSFCRTDLKFCSCSD-----------------DTTVKVWDFARCQEERSLTGHGWDVKSVDWH 279 (715)
Q Consensus 221 ~~~~~~----h~~~I~~l~~spd~~~Las~s~-----------------Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~s 279 (715)
...... ....+.+++++++++++++.+. .+.|..+|.. + ....+..+......++|+
T Consensus 103 ~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g-~~~~~~~~~~~~~gi~~s 180 (296)
T 3e5z_A 103 ESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-G-TLSAPIRDRVKPNGLAFL 180 (296)
T ss_dssp EEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-S-CEEEEECCCSSEEEEEEC
T ss_pred EEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-C-CEEEeecCCCCCccEEEC
Confidence 443321 1235678999999998887321 2456666554 3 334444566678899999
Q ss_pred CCCCEEEEEeCCCcEEEEECC-CCce---eEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCC
Q 005096 280 PTKSLLVSGGKDSLVKLWDAK-SGRE---LCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRK 355 (715)
Q Consensus 280 pdg~~L~sgs~Dg~I~iwDl~-s~~~---~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~ 355 (715)
+++++|++.+.++.|++||++ +++. ...+......+.+++++++|+++++. ++.|.+||.. ++.+..+..+..
T Consensus 181 ~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~~~~~~~~ 257 (296)
T 3e5z_A 181 PSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDELGRVLTPQT 257 (296)
T ss_dssp TTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEEEEEECSSC
T ss_pred CCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CCEEEEEECCCC
Confidence 999988777778999999997 4544 23333345567789999999866555 8899999986 788888887777
Q ss_pred CeEEEEEccCCCCEEEEEeCCCcEEEEEcCCC
Q 005096 356 DVTALAWHPFHEEYFVSGSLDGSIFHWLVGHE 387 (715)
Q Consensus 356 ~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~ 387 (715)
+++++|...+++.|++++.+ .|..++.++.
T Consensus 258 -~~~~~f~~~d~~~L~v~t~~-~l~~~~~~~~ 287 (296)
T 3e5z_A 258 -TSNLCFGGPEGRTLYMTVST-EFWSIETNVR 287 (296)
T ss_dssp -CCEEEEESTTSCEEEEEETT-EEEEEECSCC
T ss_pred -ceeEEEECCCCCEEEEEcCC-eEEEEEcccc
Confidence 99999953267777777765 4444555444
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.73 E-value=6.1e-16 Score=158.30 Aligned_cols=241 Identities=9% Similarity=-0.037 Sum_probs=175.0
Q ss_pred cEEEEEEcCCCCEEE-EEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeee
Q 005096 146 SINRVLWTPTGRRLI-TGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANK 224 (715)
Q Consensus 146 ~I~~l~~spdg~~La-tgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~ 224 (715)
...+++++++|++++ +.+.++.|.+||..+.........+...+.+++++++++++++.. ++.|.+||.+........
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~~~ 103 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTVLP 103 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCEECC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEeeee
Confidence 678999999998666 446788999999776544332233345688999999998666655 889999998776544332
Q ss_pred cCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCce
Q 005096 225 SAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRE 304 (715)
Q Consensus 225 ~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~ 304 (715)
......+.+++++++++++++...++.|.+||..+.............+.+|+++++++++++...++.|.+||.++...
T Consensus 104 ~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~ 183 (270)
T 1rwi_B 104 FDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQ 183 (270)
T ss_dssp CCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCE
T ss_pred cCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCce
Confidence 23336789999999998777777788999998765544333223334678999999999777777788999999887654
Q ss_pred eEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEc
Q 005096 305 LCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLV 384 (715)
Q Consensus 305 ~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~ 384 (715)
..........+.+|+++++++++++...++.|.+||............+...+.++++++ +++++++...+++|++|+.
T Consensus 184 ~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~-~g~l~v~~~~~~~v~~~~~ 262 (270)
T 1rwi_B 184 VVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDS-DRTVYVADRGNDRVVKLTS 262 (270)
T ss_dssp EECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECT-TCCEEEEEGGGTEEEEECC
T ss_pred EeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECC-CCCEEEEECCCCEEEEEcC
Confidence 433333336789999999997777776788999999876544332223346789999998 6688888889999999998
Q ss_pred CCCC
Q 005096 385 GHET 388 (715)
Q Consensus 385 ~~~~ 388 (715)
....
T Consensus 263 ~~~~ 266 (270)
T 1rwi_B 263 LEHH 266 (270)
T ss_dssp CGGG
T ss_pred CCcc
Confidence 6544
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.73 E-value=9.6e-15 Score=154.52 Aligned_cols=234 Identities=9% Similarity=0.035 Sum_probs=171.0
Q ss_pred ecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCC----CcEEEEe
Q 005096 139 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDG----GAIKYWQ 214 (715)
Q Consensus 139 ~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~d----g~I~iwd 214 (715)
.+..+...+.+++|+++|++++++..++.|++||.++++.......+...+.+++|+++++++++...+ +.|.+||
T Consensus 39 ~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d 118 (333)
T 2dg1_A 39 EISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAAT 118 (333)
T ss_dssp EEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEEC
T ss_pred EEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEe
Confidence 445666778999999999988888889999999999887766655667889999999999988877666 6899999
Q ss_pred CCCCceeeeec--CCCCCeEEEEEecCCCEEEEEEC------CCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEE
Q 005096 215 NNMNNVKANKS--AHKESVRDLSFCRTDLKFCSCSD------DTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLV 286 (715)
Q Consensus 215 ~~~~~~~~~~~--~h~~~I~~l~~spd~~~Las~s~------Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~ 286 (715)
.+++.....+. .....+.+++++++++++++... ++.|..||.++++... +......+..++|++++++|+
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~i~~~~dg~~l~ 197 (333)
T 2dg1_A 119 ENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTP-IIQNISVANGIALSTDEKVLW 197 (333)
T ss_dssp TTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEE-EEEEESSEEEEEECTTSSEEE
T ss_pred CCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEE-eecCCCcccceEECCCCCEEE
Confidence 88876553332 24467899999999987776654 3556666665544333 222334578999999998665
Q ss_pred EE-eCCCcEEEEECCC-CceeEEe--------ccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCC-
Q 005096 287 SG-GKDSLVKLWDAKS-GRELCSF--------HGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRK- 355 (715)
Q Consensus 287 sg-s~Dg~I~iwDl~s-~~~~~~~--------~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~- 355 (715)
++ +.++.|++||+++ ++.+..+ .. ...+..++++++++++++...++.|.+||. +++.+..+.....
T Consensus 198 v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~-~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~ 275 (333)
T 2dg1_A 198 VTETTANRLHRIALEDDGVTIQPFGATIPYYFTG-HEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRD 275 (333)
T ss_dssp EEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCS-SSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGG
T ss_pred EEeCCCCeEEEEEecCCCcCcccccceEEEecCC-CCCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCc
Confidence 44 5578999999964 3333211 11 146788999999998888778899999998 4677777664443
Q ss_pred -----CeEEEEEccCCCCEEEEEeCC
Q 005096 356 -----DVTALAWHPFHEEYFVSGSLD 376 (715)
Q Consensus 356 -----~V~~l~~sp~~~~~l~sgs~D 376 (715)
.+.+++|++ ++..|++++.+
T Consensus 276 ~g~~~~~~~~~~~~-dg~~L~v~~~~ 300 (333)
T 2dg1_A 276 EGHMLRSTHPQFIP-GTNQLIICSND 300 (333)
T ss_dssp GTCSCBCCEEEECT-TSCEEEEEEEC
T ss_pred cccccCcceEEECC-CCCEEEEEeCc
Confidence 689999998 44445444443
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.73 E-value=6.3e-17 Score=174.78 Aligned_cols=255 Identities=10% Similarity=0.004 Sum_probs=175.4
Q ss_pred EEEeCCCCceEEEEeccCCC-----EEEEEEcCCCCEEEEEeCC---CcEEEEeCCCCceeeeecCCCCCeEEEEEecCC
Q 005096 169 TLWNGQSFNFEMILQAHDHA-----IRSMVWSHNDNWMVSGDDG---GAIKYWQNNMNNVKANKSAHKESVRDLSFCRTD 240 (715)
Q Consensus 169 ~Iwd~~~~~~~~~l~~h~~~-----V~~l~~spdg~~L~tgs~d---g~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~ 240 (715)
..+|..+++.+..+..+... +.+++|++||++|+....+ ..|.+||+.+++...........+..+.|++|+
T Consensus 13 ~~~d~~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg 92 (396)
T 3c5m_A 13 TFVDSDTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDE 92 (396)
T ss_dssp EEECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTS
T ss_pred eeecCCCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCC
Confidence 34577777777777665444 6778999999998766443 468888998887655443333333447899999
Q ss_pred CEEEEEECCCcEEEEECCCCeeEEEecccCCceEE-------------------EEEcCCCCEEEEE-----eCCCcEEE
Q 005096 241 LKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKS-------------------VDWHPTKSLLVSG-----GKDSLVKL 296 (715)
Q Consensus 241 ~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~s-------------------i~~spdg~~L~sg-----s~Dg~I~i 296 (715)
++|+.++.++.|++||+.+++....+..+...... ++|+++++.++++ ..+..|++
T Consensus 93 ~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~ 172 (396)
T 3c5m_A 93 RAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIK 172 (396)
T ss_dssp SEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEE
T ss_pred CEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEE
Confidence 99999999999999999887766555544333222 3567777766554 35668999
Q ss_pred EECCCCceeEEeccCCCceEEEEEcC-CCCEEEEEECC------CeEEEEECCCCeEEEEeecC--CCCeEEEEEccCCC
Q 005096 297 WDAKSGRELCSFHGHKNMVLCVKWNQ-NGNWVLTASKD------QIIKLYDIRAMKELESFRGH--RKDVTALAWHPFHE 367 (715)
Q Consensus 297 wDl~s~~~~~~~~~~~~~I~sl~~sp-dg~~Lasgs~d------g~I~iwDl~t~~~~~~~~~h--~~~V~~l~~sp~~~ 367 (715)
||+.+++..... .+...+..+.|++ +++.|+..+.+ ..|.+||+.+++.. .+..+ ...+..++|++ ++
T Consensus 173 ~d~~~g~~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~sp-dg 249 (396)
T 3c5m_A 173 VDIETGELEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVR-KIKEHAEGESCTHEFWIP-DG 249 (396)
T ss_dssp EETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCE-ESSCCCTTEEEEEEEECT-TS
T ss_pred EECCCCcEEeec-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCcee-EeeccCCCccccceEECC-CC
Confidence 999988765544 4667799999999 78877776643 36889998765433 33323 23578899999 55
Q ss_pred CEEEEEeCC-----CcEEEEEcCCCCceEEEeeccCCCEEEEEEcC-CCCEEEEEE----------------CCCeEEEE
Q 005096 368 EYFVSGSLD-----GSIFHWLVGHETPQVEIHNVHDNTVWDLAWHP-IGYLLCSGS----------------NDHTTKFW 425 (715)
Q Consensus 368 ~~l~sgs~D-----G~I~iwd~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~L~sgs----------------~Dg~I~iW 425 (715)
++|+.++.+ +.|++||+.++.... +.. .. .+. +.|++ |+++|++++ .+..|++|
T Consensus 250 ~~l~~~~~~~~~~~~~l~~~d~~~g~~~~-l~~-~~-~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~ 325 (396)
T 3c5m_A 250 SAMAYVSYFKGQTDRVIYKANPETLENEE-VMV-MP-PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVL 325 (396)
T ss_dssp SCEEEEEEETTTCCEEEEEECTTTCCEEE-EEE-CC-SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEE
T ss_pred CEEEEEecCCCCccceEEEEECCCCCeEE-eee-CC-CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEE
Confidence 555444332 349999997765332 221 12 233 89999 999888765 34789999
Q ss_pred ecCCC
Q 005096 426 CRNRP 430 (715)
Q Consensus 426 dl~~~ 430 (715)
|++..
T Consensus 326 d~~~~ 330 (396)
T 3c5m_A 326 NTKAK 330 (396)
T ss_dssp ETTTT
T ss_pred ecccC
Confidence 98643
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=1.7e-14 Score=164.47 Aligned_cols=283 Identities=12% Similarity=0.105 Sum_probs=205.6
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCeEEEEeCC--CCceEEEEeccCCCEEEEEEc----CCCCEEEEEeC-CCcEEEEeCCC
Q 005096 145 CSINRVLWTPTGRRLITGSQSGEFTLWNGQ--SFNFEMILQAHDHAIRSMVWS----HNDNWMVSGDD-GGAIKYWQNNM 217 (715)
Q Consensus 145 ~~I~~l~~spdg~~Latgs~dg~I~Iwd~~--~~~~~~~l~~h~~~V~~l~~s----pdg~~L~tgs~-dg~I~iwd~~~ 217 (715)
..+..++|++||++|++++.|+.|.+||+. +.+.+..+... .....++|+ +||+++++++. ++.|.|+|..+
T Consensus 197 ~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G-~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t 275 (567)
T 1qks_A 197 YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIG-SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGET 275 (567)
T ss_dssp SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECC-SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTT
T ss_pred CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecC-CCCceeEEccccCCCCCEEEEEEccCCeEEEEECCC
Confidence 356799999999999999999999999996 77888777653 346799999 69998877654 59999999999
Q ss_pred CceeeeecCC-----------CCCeEEEEEecCCCEE-EEEECCCcEEEEECCCCeeEEEe-cccCCceEEEEEcCCCCE
Q 005096 218 NNVKANKSAH-----------KESVRDLSFCRTDLKF-CSCSDDTTVKVWDFARCQEERSL-TGHGWDVKSVDWHPTKSL 284 (715)
Q Consensus 218 ~~~~~~~~~h-----------~~~I~~l~~spd~~~L-as~s~Dg~V~iwdl~~~~~~~~l-~~~~~~I~si~~spdg~~ 284 (715)
.+.+..+... ...+..+..++++..+ +....+|.|.++|..+.+..... ........++.|++++++
T Consensus 276 ~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~ 355 (567)
T 1qks_A 276 LEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRY 355 (567)
T ss_dssp CCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCE
T ss_pred CcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCE
Confidence 8877665422 1267888888876654 44556799999999775432221 123445778999999998
Q ss_pred EEEEe-CCCcEEEEECCCCceeEEecc-----CCCceEEEEEcCCCCEEE-EEE-CCCeEEEEECCC-------CeEEEE
Q 005096 285 LVSGG-KDSLVKLWDAKSGRELCSFHG-----HKNMVLCVKWNQNGNWVL-TAS-KDQIIKLYDIRA-------MKELES 349 (715)
Q Consensus 285 L~sgs-~Dg~I~iwDl~s~~~~~~~~~-----~~~~I~sl~~spdg~~La-sgs-~dg~I~iwDl~t-------~~~~~~ 349 (715)
|++++ .++.|.++|+++++.+..+.. |.+.-..+ +++++..++ ++. .++.|.++|..+ ++.+.+
T Consensus 356 ~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~ 434 (567)
T 1qks_A 356 FITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDS 434 (567)
T ss_dssp EEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEE
T ss_pred EEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEE
Confidence 87765 578899999999987766643 22111122 577755554 443 468999999988 778888
Q ss_pred eecCCCCeEEEEEccCCCCEEEEEeC-------CCcEEEEEcCCC-----CceEEEeec--------cCCCEEEEEEcCC
Q 005096 350 FRGHRKDVTALAWHPFHEEYFVSGSL-------DGSIFHWLVGHE-----TPQVEIHNV--------HDNTVWDLAWHPI 409 (715)
Q Consensus 350 ~~~h~~~V~~l~~sp~~~~~l~sgs~-------DG~I~iwd~~~~-----~~~~~~~~~--------h~~~V~~l~~spd 409 (715)
+......-..|..+| ++++|.+... ...|.|+|+.+. ....+++.. ....+..+.|+++
T Consensus 435 i~~~g~g~~~i~~~p-~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (567)
T 1qks_A 435 FPALGGGSLFIKTHP-NSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKD 513 (567)
T ss_dssp EECSCSCCCCEECCT-TCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTT
T ss_pred EecCCCCCEEEEeCC-CCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCC
Confidence 886655556678899 6666666552 359999999876 333333321 2357899999999
Q ss_pred CCEEEEEEC-----CCeEEEEecCCC
Q 005096 410 GYLLCSGSN-----DHTTKFWCRNRP 430 (715)
Q Consensus 410 g~~L~sgs~-----Dg~I~iWdl~~~ 430 (715)
|+.|.++.. ++.|.|+|.++.
T Consensus 514 G~~~~~s~~~~~~~~~~i~v~D~~t~ 539 (567)
T 1qks_A 514 GTEVWFSVWNGKDQESALVVVDDKTL 539 (567)
T ss_dssp SSEEEEEEECCTTSCCEEEEEETTTT
T ss_pred CCEEEEEeecCCCCCCcEEEEECCCc
Confidence 988777643 799999997653
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.72 E-value=1.4e-15 Score=155.65 Aligned_cols=240 Identities=10% Similarity=-0.033 Sum_probs=174.3
Q ss_pred CEEEEEEcCCCCEEE-EEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEe
Q 005096 188 AIRSMVWSHNDNWMV-SGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSL 266 (715)
Q Consensus 188 ~V~~l~~spdg~~L~-tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l 266 (715)
...++++++++++++ +...++.|.+|+..+.............+.+++++++++++++.. ++.|.+||..........
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~~~ 103 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTVLP 103 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCEECC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEeeee
Confidence 678999999998776 446788999998766554333233445788999999988655555 889999998765443222
Q ss_pred cccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeE
Q 005096 267 TGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKE 346 (715)
Q Consensus 267 ~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~ 346 (715)
......+.+++++++++++++...++.|.+||..+.............+.+++++++++++++...++.|.+||......
T Consensus 104 ~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~ 183 (270)
T 1rwi_B 104 FDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQ 183 (270)
T ss_dssp CCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCE
T ss_pred cCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCce
Confidence 22335789999999999777777788999998765544332223334678999999999777766788999999987665
Q ss_pred EEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEe
Q 005096 347 LESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWC 426 (715)
Q Consensus 347 ~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWd 426 (715)
..........+.+|++++ ++.++++...++.|.+||.+...... ....+...+.+++++++|+++++...++.|++|+
T Consensus 184 ~~~~~~~~~~p~~i~~d~-~g~l~v~~~~~~~v~~~~~~~~~~~~-~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~ 261 (270)
T 1rwi_B 184 VVLPFTDITAPWGIAVDE-AGTVYVTEHNTNQVVKLLAGSTTSTV-LPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLT 261 (270)
T ss_dssp EECCCSSCCSEEEEEECT-TCCEEEEETTTSCEEEECTTCSCCEE-CCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEEC
T ss_pred EeecccCCCCceEEEECC-CCCEEEEECCCCcEEEEcCCCCccee-eccCCCCCceeEEECCCCCEEEEECCCCEEEEEc
Confidence 443333446789999998 56888887788899999986654322 2222335789999999999888988999999999
Q ss_pred cCCC
Q 005096 427 RNRP 430 (715)
Q Consensus 427 l~~~ 430 (715)
+...
T Consensus 262 ~~~~ 265 (270)
T 1rwi_B 262 SLEH 265 (270)
T ss_dssp CCGG
T ss_pred CCCc
Confidence 8653
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.71 E-value=4.5e-15 Score=157.85 Aligned_cols=256 Identities=8% Similarity=0.002 Sum_probs=188.2
Q ss_pred CCCeEEEEeCCCCceEEEEec------cCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEe
Q 005096 164 QSGEFTLWNGQSFNFEMILQA------HDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFC 237 (715)
Q Consensus 164 ~dg~I~Iwd~~~~~~~~~l~~------h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~s 237 (715)
.++.|.+||.++++....+.. .......+++. +++++++...++.|.+||..+++.+..+. .......++++
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~ 92 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFL 92 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEE
T ss_pred CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEe
Confidence 378999999999887654421 12446778774 44555666678999999999999877774 35678899998
Q ss_pred cCCCEEEEEE-CCCcEEEEECCCCeeEEEecccC-----CceEEEEEcCCCCEEEEEe--CCCcEEEEECCCCceeEEec
Q 005096 238 RTDLKFCSCS-DDTTVKVWDFARCQEERSLTGHG-----WDVKSVDWHPTKSLLVSGG--KDSLVKLWDAKSGRELCSFH 309 (715)
Q Consensus 238 pd~~~Las~s-~Dg~V~iwdl~~~~~~~~l~~~~-----~~I~si~~spdg~~L~sgs--~Dg~I~iwDl~s~~~~~~~~ 309 (715)
++++ |+++. .++.|.+||..+++....+.... .....+++ +++.|+++. .++.|.+||+++++.+..+.
T Consensus 93 ~~g~-lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~ 169 (328)
T 3dsm_A 93 SDEK-AYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELT 169 (328)
T ss_dssp ETTE-EEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEE
T ss_pred CCCe-EEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEE
Confidence 8884 55554 89999999999998877665332 15567777 355555555 48899999999998887776
Q ss_pred cCCCceEEEEEcCCCCEEEEEECC----------CeEEEEECCCCeEEEEeecC-CCCeEEEEEccCCCCEEEEEeCCCc
Q 005096 310 GHKNMVLCVKWNQNGNWVLTASKD----------QIIKLYDIRAMKELESFRGH-RKDVTALAWHPFHEEYFVSGSLDGS 378 (715)
Q Consensus 310 ~~~~~I~sl~~spdg~~Lasgs~d----------g~I~iwDl~t~~~~~~~~~h-~~~V~~l~~sp~~~~~l~sgs~DG~ 378 (715)
. ......+++++++++++++..+ +.|.+||.++++.+..+... ......+++++ ++++|+++.. .
T Consensus 170 ~-g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~-d~~~lyv~~~--~ 245 (328)
T 3dsm_A 170 I-GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNG-TRDTLYWINN--D 245 (328)
T ss_dssp C-SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECT-TSCEEEEESS--S
T ss_pred c-CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEec-CCCEEEEEcc--E
Confidence 4 3346788999999877666554 78999999999988777643 34789999999 5666665544 8
Q ss_pred EEEEEcCCCCceEE-EeeccCCCEEEEEEcC-CCCEEEEE----ECCCeEEEEecC
Q 005096 379 IFHWLVGHETPQVE-IHNVHDNTVWDLAWHP-IGYLLCSG----SNDHTTKFWCRN 428 (715)
Q Consensus 379 I~iwd~~~~~~~~~-~~~~h~~~V~~l~~sp-dg~~L~sg----s~Dg~I~iWdl~ 428 (715)
|.+||..+.+.... +..........+++++ ++.++++. ..++.|.+||.+
T Consensus 246 v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~ 301 (328)
T 3dsm_A 246 IWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ 301 (328)
T ss_dssp EEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT
T ss_pred EEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC
Confidence 99999977654311 1111245789999998 56666666 578999999986
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=4.3e-14 Score=161.16 Aligned_cols=275 Identities=11% Similarity=0.043 Sum_probs=200.6
Q ss_pred CCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCC--CCceeeeecCCCCCe
Q 005096 154 PTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNN--MNNVKANKSAHKESV 231 (715)
Q Consensus 154 pdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~--~~~~~~~~~~h~~~I 231 (715)
+++.++++...+++|.+||..+++.+..+.. ...+..+.|++|+++|++++.|+.|.+||+. +.+.+..+.. ....
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~-g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~-G~~P 242 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDT-GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKI-GSEA 242 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEEEEEC-SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEEC-CSEE
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEEEEEeC-CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEec-CCCC
Confidence 3445666777889999999999999988874 3467799999999999999999999999996 6777666654 3346
Q ss_pred EEEEEe----cCCCEEEEEEC-CCcEEEEECCCCeeEEEeccc-----------CCceEEEEEcCCCCEE-EEEeCCCcE
Q 005096 232 RDLSFC----RTDLKFCSCSD-DTTVKVWDFARCQEERSLTGH-----------GWDVKSVDWHPTKSLL-VSGGKDSLV 294 (715)
Q Consensus 232 ~~l~~s----pd~~~Las~s~-Dg~V~iwdl~~~~~~~~l~~~-----------~~~I~si~~spdg~~L-~sgs~Dg~I 294 (715)
..++|+ +|++++++++. +++|.|+|..+.+.+..+... ...+..+..++++..+ +....+|.|
T Consensus 243 ~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v 322 (567)
T 1qks_A 243 RSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKI 322 (567)
T ss_dssp EEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEE
T ss_pred ceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeE
Confidence 789999 69998887765 589999999998888776532 1257788888886644 445567999
Q ss_pred EEEECCCCceeEEec-cCCCceEEEEEcCCCCEEEEEE-CCCeEEEEECCCCeEEEEeec-CCCC--eEEEE-EccCCCC
Q 005096 295 KLWDAKSGRELCSFH-GHKNMVLCVKWNQNGNWVLTAS-KDQIIKLYDIRAMKELESFRG-HRKD--VTALA-WHPFHEE 368 (715)
Q Consensus 295 ~iwDl~s~~~~~~~~-~~~~~I~sl~~spdg~~Lasgs-~dg~I~iwDl~t~~~~~~~~~-h~~~--V~~l~-~sp~~~~ 368 (715)
.++|..+.+.+.... .......++.|++++++|++++ .++.|.++|+.+++.+..+.. .... -..+. ++++.+.
T Consensus 323 ~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p~~g~ 402 (567)
T 1qks_A 323 LLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGP 402 (567)
T ss_dssp EEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEE
T ss_pred EEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceeeECCCCCc
Confidence 999998754332211 2344577899999999988776 578999999999998877764 2211 11222 4664455
Q ss_pred EEEEEe-CCCcEEEEEcCCC------CceEEEeeccCCCEEEEEEcCCCCEEEEEEC-------CCeEEEEecCCC
Q 005096 369 YFVSGS-LDGSIFHWLVGHE------TPQVEIHNVHDNTVWDLAWHPIGYLLCSGSN-------DHTTKFWCRNRP 430 (715)
Q Consensus 369 ~l~sgs-~DG~I~iwd~~~~------~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~-------Dg~I~iWdl~~~ 430 (715)
+++++. .++.|.++|.+.. ...+..+......-..+..++++++|.+... .++|.++|++..
T Consensus 403 v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~ 478 (567)
T 1qks_A 403 VWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAM 478 (567)
T ss_dssp EEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGC
T ss_pred EEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcc
Confidence 666654 4689999999873 2233333332233345778999999988763 459999999765
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.69 E-value=7.4e-15 Score=152.39 Aligned_cols=212 Identities=9% Similarity=0.037 Sum_probs=171.8
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCceEEEEeccC-CCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeecCC-CCCeE
Q 005096 155 TGRRLITGSQSGEFTLWNGQSFNFEMILQAHD-HAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAH-KESVR 232 (715)
Q Consensus 155 dg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~-~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~~h-~~~I~ 232 (715)
.+++|++++.|+.|.+||.++++.+..+..+. ..++++.++++|++|+ +.++.|..||. +++.+..+... ...+.
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~ 80 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQ 80 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCcccc
Confidence 46789999999999999999999999998876 5789999999999888 35778999999 78888777664 35788
Q ss_pred EEEEecCCCEEEEEEC-CCcEEEEECCCCeeEEEecc------cCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCcee
Q 005096 233 DLSFCRTDLKFCSCSD-DTTVKVWDFARCQEERSLTG------HGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGREL 305 (715)
Q Consensus 233 ~l~~spd~~~Las~s~-Dg~V~iwdl~~~~~~~~l~~------~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~ 305 (715)
++.+.+|+++|++.+. ++.|..+|. +++.+..+.. +......+++.+++++|++...++.|.+||.+ ++.+
T Consensus 81 ~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~ 158 (276)
T 3no2_A 81 TARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLL 158 (276)
T ss_dssp EEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEE
T ss_pred ccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEE
Confidence 8999999999999887 778888885 6666665542 11235567789999999999999999999998 9999
Q ss_pred EEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCC------CCeEEEEEccCCCCEEEEE
Q 005096 306 CSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHR------KDVTALAWHPFHEEYFVSG 373 (715)
Q Consensus 306 ~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~------~~V~~l~~sp~~~~~l~sg 373 (715)
.++... ....++.+.+++++|++++.+++|..+|..+++.+.++.... ..+..+...+ +++++++.
T Consensus 159 w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~-~G~i~v~~ 230 (276)
T 3no2_A 159 NSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQ-NGGLYICN 230 (276)
T ss_dssp EEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECT-TSCEEEEE
T ss_pred EEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcC-CCCEEEEe
Confidence 888754 456678888999999999888899999999999999987432 2266777776 66666665
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.3e-14 Score=154.29 Aligned_cols=251 Identities=11% Similarity=-0.015 Sum_probs=183.0
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeec
Q 005096 146 SINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKS 225 (715)
Q Consensus 146 ~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~ 225 (715)
....+++. +++++++...++.|.+||..+++.+..+. .......++++++++++++...++.|.+||..++++...+.
T Consensus 45 ~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~ 122 (328)
T 3dsm_A 45 VAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIE 122 (328)
T ss_dssp CEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEE
T ss_pred cceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEE
Confidence 34566664 34455555667999999999999988885 34678899998888544444488999999999988776654
Q ss_pred CCC-----CCeEEEEEecCCCEEEEEE--CCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCC-------
Q 005096 226 AHK-----ESVRDLSFCRTDLKFCSCS--DDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKD------- 291 (715)
Q Consensus 226 ~h~-----~~I~~l~~spd~~~Las~s--~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~D------- 291 (715)
... .....+++ ++..|+++. .++.|.+||+++++.+..+.. ......+++++++++++++..+
T Consensus 123 ~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~-g~~p~~i~~~~dG~l~v~~~~~~~~~~~~ 199 (328)
T 3dsm_A 123 CPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTI-GIQPTSLVMDKYNKMWTITDGGYEGSPYG 199 (328)
T ss_dssp CTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEEC-SSCBCCCEECTTSEEEEEBCCBCTTCSSC
T ss_pred cCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEc-CCCccceEEcCCCCEEEEECCCccCCccc
Confidence 332 14566777 455555555 488999999999988877764 3456789999999877766554
Q ss_pred ---CcEEEEECCCCceeEEeccC-CCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEE--eecCCCCeEEEEEccC
Q 005096 292 ---SLVKLWDAKSGRELCSFHGH-KNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELES--FRGHRKDVTALAWHPF 365 (715)
Q Consensus 292 ---g~I~iwDl~s~~~~~~~~~~-~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~--~~~h~~~V~~l~~sp~ 365 (715)
+.|.+||.++++.+..+... ......++|++++++|+++.. .|.+||..+++.... +.........++++++
T Consensus 200 ~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~ 277 (328)
T 3dsm_A 200 YEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPN 277 (328)
T ss_dssp BCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTT
T ss_pred cCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCC
Confidence 78999999998877666532 346899999999999988765 899999988775421 1112467899999997
Q ss_pred CCCEEEEE----eCCCcEEEEEcCCCCceEEEeeccCCCEEEEEE
Q 005096 366 HEEYFVSG----SLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAW 406 (715)
Q Consensus 366 ~~~~l~sg----s~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~ 406 (715)
++.++++. ..++.|.+||.+ ++.+..+.. ...-..++|
T Consensus 278 ~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~--G~~P~~~~~ 319 (328)
T 3dsm_A 278 NGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYV--GIIPGAFCW 319 (328)
T ss_dssp TCCEEEEECTTSSSEEEEEEECTT-CCEEEEEEE--EESEEEEEE
T ss_pred CCeEEEEcccccccCCEEEEECCC-CCEEEEEEe--ccCcceEEE
Confidence 78888887 678899999997 554444432 223345554
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.69 E-value=3e-16 Score=184.20 Aligned_cols=243 Identities=10% Similarity=-0.031 Sum_probs=170.5
Q ss_pred CCCCccEEEEEEcCCCCEEEEE-----eCCCeEEEEeCCCCceEEEEeccCCCE--EEEEEcCCCCEEEEEeCCCc----
Q 005096 141 NKNRCSINRVLWTPTGRRLITG-----SQSGEFTLWNGQSFNFEMILQAHDHAI--RSMVWSHNDNWMVSGDDGGA---- 209 (715)
Q Consensus 141 ~~H~~~I~~l~~spdg~~Latg-----s~dg~I~Iwd~~~~~~~~~l~~h~~~V--~~l~~spdg~~L~tgs~dg~---- 209 (715)
.+|...+.+++|||||++||.+ +.+.+|+|||+.+++.+. ..+...+ ..++|++|++.|+.++.|..
T Consensus 117 ~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~ 194 (695)
T 2bkl_A 117 KDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIK 194 (695)
T ss_dssp SSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS--SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSC
T ss_pred cCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC--CcccCcccccceEEecCCCEEEEEEecCCCCCc
Confidence 3566789999999999999944 334689999999987641 1121222 68999999999999888766
Q ss_pred ---------EEEEeCCCCc----eeeeecCCCCCeEEEEEecCCCEEEEEECCC----cEEEEECCCCeeEEEecccCCc
Q 005096 210 ---------IKYWQNNMNN----VKANKSAHKESVRDLSFCRTDLKFCSCSDDT----TVKVWDFARCQEERSLTGHGWD 272 (715)
Q Consensus 210 ---------I~iwd~~~~~----~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg----~V~iwdl~~~~~~~~l~~~~~~ 272 (715)
|++|++.++. ++.....+...+..+.|++|+++|++.+.++ .|++||..+++ ...+..+...
T Consensus 195 ~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~-~~~l~~~~~~ 273 (695)
T 2bkl_A 195 VDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKD-FRLLVKGVGA 273 (695)
T ss_dssp GGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSS-CEEEEECSSC
T ss_pred cccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCc-eEEeecCCCc
Confidence 9999998875 3333334556789999999999998877665 67777765554 3444445556
Q ss_pred eEEEEEcCCCCEEEEEe---CCCcEEEEECCCCce---eEEeccC-CCceEEEEEcCCCCEEEEEECCCeEEEEECC-CC
Q 005096 273 VKSVDWHPTKSLLVSGG---KDSLVKLWDAKSGRE---LCSFHGH-KNMVLCVKWNQNGNWVLTASKDQIIKLYDIR-AM 344 (715)
Q Consensus 273 I~si~~spdg~~L~sgs---~Dg~I~iwDl~s~~~---~~~~~~~-~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~-t~ 344 (715)
+....| +++++++++. .++.|.+||+++++. ...+..+ ...|..++|+ ++.++++...|+..+||.+. ++
T Consensus 274 ~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g 351 (695)
T 2bkl_A 274 KYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKG 351 (695)
T ss_dssp CEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTC
T ss_pred eEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCC
Confidence 666666 4566444443 257899999987653 3333333 4568888998 67788888889988887654 45
Q ss_pred eEEEEeecC-CCCeEEEEEccCCCCEEEEEeC---CCcEEEEEcCCCC
Q 005096 345 KELESFRGH-RKDVTALAWHPFHEEYFVSGSL---DGSIFHWLVGHET 388 (715)
Q Consensus 345 ~~~~~~~~h-~~~V~~l~~sp~~~~~l~sgs~---DG~I~iwd~~~~~ 388 (715)
+.+..+..+ ...|..+++++++..++++.+. .++|++||+.++.
T Consensus 352 ~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~ 399 (695)
T 2bkl_A 352 KPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGK 399 (695)
T ss_dssp CEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCC
T ss_pred CeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 666666655 5667888888844444444433 4679999998765
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.6e-14 Score=149.79 Aligned_cols=233 Identities=11% Similarity=0.042 Sum_probs=185.6
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCceeeeecCCC-CCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEeccc-CCceE
Q 005096 197 NDNWMVSGDDGGAIKYWQNNMNNVKANKSAHK-ESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGH-GWDVK 274 (715)
Q Consensus 197 dg~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~-~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~-~~~I~ 274 (715)
.+++|++++.|+.|.+||.++++.+..+..+. ..+.++.+++++++|+ +.++.|+.||. +++.+..+... ...+.
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~ 80 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQ 80 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCcccc
Confidence 46889999999999999999999998887765 5789999999999888 45788999998 78888888764 35788
Q ss_pred EEEEcCCCCEEEEEeC-CCcEEEEECCCCceeEEecc------CCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEE
Q 005096 275 SVDWHPTKSLLVSGGK-DSLVKLWDAKSGRELCSFHG------HKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKEL 347 (715)
Q Consensus 275 si~~spdg~~L~sgs~-Dg~I~iwDl~s~~~~~~~~~------~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~ 347 (715)
++.+.++|++|++.+. ++.|..+|. +++.+.++.. +......+++.++|++|++...++.|.+||.+ ++.+
T Consensus 81 ~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~ 158 (276)
T 3no2_A 81 TARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLL 158 (276)
T ss_dssp EEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEE
T ss_pred ccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEE
Confidence 9999999999999887 778888885 6777776642 11234566788999999999999999999998 9999
Q ss_pred EEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeecc-----CCCEEEEEEcCCCCEEEEEECC---
Q 005096 348 ESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVH-----DNTVWDLAWHPIGYLLCSGSND--- 419 (715)
Q Consensus 348 ~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h-----~~~V~~l~~spdg~~L~sgs~D--- 419 (715)
.++... ..+.++.+.+ ++++|++++.+++|..+|..+++.+.++.... ...+..+...++|.++++....
T Consensus 159 w~~~~~-~~~~~~~~~~-~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g~~~ 236 (276)
T 3no2_A 159 NSVKLS-GTPFSSAFLD-NGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQGHDR 236 (276)
T ss_dssp EEEECS-SCCCEEEECT-TSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEECTTCT
T ss_pred EEEECC-CCccceeEcC-CCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEeccCccc
Confidence 998865 3456677777 78899988888899999998888777765321 1237889999999988887522
Q ss_pred -----CeEEEEecCCCCCcccc
Q 005096 420 -----HTTKFWCRNRPGDTARD 436 (715)
Q Consensus 420 -----g~I~iWdl~~~~~~~~~ 436 (715)
+..++++++..++..+.
T Consensus 237 ~~~~~~~~~~~~~~~~g~~~W~ 258 (276)
T 3no2_A 237 EAGKGKHPQLVEIDSEGKVVWQ 258 (276)
T ss_dssp TGGGSCCCSEEEECTTSBEEEE
T ss_pred cccccCCceEEEECCCCCEEEE
Confidence 24578888777766544
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.66 E-value=3.8e-13 Score=145.69 Aligned_cols=271 Identities=9% Similarity=-0.068 Sum_probs=188.3
Q ss_pred EcCCCCEEEEEeC--CC---eEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEe----------CCCcEEEEeCC
Q 005096 152 WTPTGRRLITGSQ--SG---EFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGD----------DGGAIKYWQNN 216 (715)
Q Consensus 152 ~spdg~~Latgs~--dg---~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs----------~dg~I~iwd~~ 216 (715)
..+++++++++.. .. +|.+||..+++.+..+...... .+++++|+++|+++. .++.|.+||..
T Consensus 28 ~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~ 105 (373)
T 2mad_H 28 PGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPV 105 (373)
T ss_pred CCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECC
Confidence 4467777777664 22 7899999999988877754444 999999999998875 36789999999
Q ss_pred CCceeeeecCC-------CCCeEEEEEecCCCEEEEEEC--CCcEEEEECCCCeeEEE-ecccCCceEEEEEcCCC-CEE
Q 005096 217 MNNVKANKSAH-------KESVRDLSFCRTDLKFCSCSD--DTTVKVWDFARCQEERS-LTGHGWDVKSVDWHPTK-SLL 285 (715)
Q Consensus 217 ~~~~~~~~~~h-------~~~I~~l~~spd~~~Las~s~--Dg~V~iwdl~~~~~~~~-l~~~~~~I~si~~spdg-~~L 285 (715)
+.+.+..+... ...-..++|++|+++|++++. ++.|.++| .+++.+.. +.... ++.+.+++ +.+
T Consensus 106 t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~----~~~~~~~~~~~~ 180 (373)
T 2mad_H 106 TFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPT----CYHIHPGAPSTF 180 (373)
T ss_pred CCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCc----eEEEEeCCCceE
Confidence 88777665432 133458999999999998874 47899999 99888777 54322 24445554 456
Q ss_pred EEEeCCCcEEEEECCCCceeEEec-----cCCCc-eEEEEEcCCCCEEEEEECCCeEEEEECCCCe--EEEEeecC----
Q 005096 286 VSGGKDSLVKLWDAKSGRELCSFH-----GHKNM-VLCVKWNQNGNWVLTASKDQIIKLYDIRAMK--ELESFRGH---- 353 (715)
Q Consensus 286 ~sgs~Dg~I~iwDl~s~~~~~~~~-----~~~~~-I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~--~~~~~~~h---- 353 (715)
++.+.||.+.+||+ +++.+.... ..... .....+.+++..++..+.++.|.+.|+.+.. .+..+...
T Consensus 181 ~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~ 259 (373)
T 2mad_H 181 YLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGR 259 (373)
T ss_pred EEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcc
Confidence 67778999999999 877663322 11111 2334566666655555578899999997542 23333211
Q ss_pred ------CCCeEEEEEccCCCCEEEEEe---------CCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCC-EEEEEE
Q 005096 354 ------RKDVTALAWHPFHEEYFVSGS---------LDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGY-LLCSGS 417 (715)
Q Consensus 354 ------~~~V~~l~~sp~~~~~l~sgs---------~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~-~L~sgs 417 (715)
......+++++++++++++.. .++.|.++|..+.+.+..+.. ....++++|++||+ +|+++.
T Consensus 260 ~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~--g~~p~~i~~s~Dg~~~l~v~~ 337 (373)
T 2mad_H 260 KADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISL--GHDVDAISVAQDGGPDLYALS 337 (373)
T ss_pred cccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEEC--CCCcCeEEECCCCCeEEEEEc
Confidence 122344788884444444433 135799999988877666643 33689999999998 777777
Q ss_pred -CCCeEEEEecCCCCC
Q 005096 418 -NDHTTKFWCRNRPGD 432 (715)
Q Consensus 418 -~Dg~I~iWdl~~~~~ 432 (715)
.++.|.+||....+.
T Consensus 338 ~~~~~V~ViD~~t~~v 353 (373)
T 2mad_H 338 AGTEVLHIYDAGAGDQ 353 (373)
T ss_pred CCCCeEEEEECCCCCE
Confidence 589999999875443
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.65 E-value=7.3e-14 Score=145.97 Aligned_cols=239 Identities=10% Similarity=0.092 Sum_probs=172.7
Q ss_pred CccEEEEEEcCCCCEEEE-------EeCCCeEEEEeCCCCceEEEEe----ccCCCEEEEEEcCC-CCEEEEEeCCCcEE
Q 005096 144 RCSINRVLWTPTGRRLIT-------GSQSGEFTLWNGQSFNFEMILQ----AHDHAIRSMVWSHN-DNWMVSGDDGGAIK 211 (715)
Q Consensus 144 ~~~I~~l~~spdg~~Lat-------gs~dg~I~Iwd~~~~~~~~~l~----~h~~~V~~l~~spd-g~~L~tgs~dg~I~ 211 (715)
-....+++|+++++++++ +..++.|.+||..+++...... .+...+.+++++++ ++++++ +.++.|.
T Consensus 17 ~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~-~~~~~l~ 95 (314)
T 1pjx_A 17 IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVA-DMRLGLL 95 (314)
T ss_dssp CTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEE-ETTTEEE
T ss_pred CCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEE-ECCCCEE
Confidence 345789999999987777 5778899999988877654332 24567999999998 655554 4445789
Q ss_pred EEeCCCCceeee-ecC----CCCCeEEEEEecCCCEEEEEECC---------------CcEEEEECCCCeeEEEecccCC
Q 005096 212 YWQNNMNNVKAN-KSA----HKESVRDLSFCRTDLKFCSCSDD---------------TTVKVWDFARCQEERSLTGHGW 271 (715)
Q Consensus 212 iwd~~~~~~~~~-~~~----h~~~I~~l~~spd~~~Las~s~D---------------g~V~iwdl~~~~~~~~l~~~~~ 271 (715)
+||.+ ++.... ... ....+.++++.++++++++...+ +.|..||.. ++.... .....
T Consensus 96 ~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~-~~~~~ 172 (314)
T 1pjx_A 96 VVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQV-DTAFQ 172 (314)
T ss_dssp EEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEE-EEEES
T ss_pred EEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEe-ccCCC
Confidence 99988 665433 221 12458899999999887776554 567777765 443332 22334
Q ss_pred ceEEEEEc----CCCCEEEEE-eCCCcEEEEECC-CCc-----eeEEeccCC-CceEEEEEcCCCCEEEEEECCCeEEEE
Q 005096 272 DVKSVDWH----PTKSLLVSG-GKDSLVKLWDAK-SGR-----ELCSFHGHK-NMVLCVKWNQNGNWVLTASKDQIIKLY 339 (715)
Q Consensus 272 ~I~si~~s----pdg~~L~sg-s~Dg~I~iwDl~-s~~-----~~~~~~~~~-~~I~sl~~spdg~~Lasgs~dg~I~iw 339 (715)
....++|+ ++++.|+++ ..++.|.+||++ +++ ....+..+. ..+..++++++|+++++...++.|.+|
T Consensus 173 ~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~ 252 (314)
T 1pjx_A 173 FPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVF 252 (314)
T ss_dssp SEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEE
T ss_pred CcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEE
Confidence 56889999 999766555 467899999986 443 222233333 568899999999988888788999999
Q ss_pred ECCCCeEEEEeecCCCCeEEEEEccCCCC-EEEEEeCCCcEEEEEcCCC
Q 005096 340 DIRAMKELESFRGHRKDVTALAWHPFHEE-YFVSGSLDGSIFHWLVGHE 387 (715)
Q Consensus 340 Dl~t~~~~~~~~~h~~~V~~l~~sp~~~~-~l~sgs~DG~I~iwd~~~~ 387 (715)
|.++++.+..+..+...+.++++++ +++ ++++...++.|.+|++...
T Consensus 253 d~~~g~~~~~~~~~~~~~~~i~~~~-dg~~l~v~~~~~~~l~~~~~~~~ 300 (314)
T 1pjx_A 253 GPDGGQPKMRIRCPFEKPSNLHFKP-QTKTIFVTEHENNAVWKFEWQRN 300 (314)
T ss_dssp CTTCBSCSEEEECSSSCEEEEEECT-TSSEEEEEETTTTEEEEEECSSC
T ss_pred cCCCCcEeEEEeCCCCCceeEEECC-CCCEEEEEeCCCCeEEEEeCCCC
Confidence 9987887777777778899999988 566 5566666789999998653
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.5e-14 Score=170.91 Aligned_cols=272 Identities=10% Similarity=0.013 Sum_probs=180.4
Q ss_pred CCCCEEEEEeCCC-----eEEEEeCC---CCceEEEEe------ccCCCEEEEEEcCCCCEEEEEeCC-----CcEEEEe
Q 005096 154 PTGRRLITGSQSG-----EFTLWNGQ---SFNFEMILQ------AHDHAIRSMVWSHNDNWMVSGDDG-----GAIKYWQ 214 (715)
Q Consensus 154 pdg~~Latgs~dg-----~I~Iwd~~---~~~~~~~l~------~h~~~V~~l~~spdg~~L~tgs~d-----g~I~iwd 214 (715)
+||++++....++ .|++.+.. .++....+. .++..+..++||+||++|+.+..+ ..|++||
T Consensus 116 pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~d 195 (741)
T 1yr2_A 116 RRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVG 195 (741)
T ss_dssp EETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEE
T ss_pred EECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEE
Confidence 7888888665543 23444444 333333222 223368899999999999876543 3599999
Q ss_pred CCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCc--------------EEEEECCCCee--EEEecc--cCCceEEE
Q 005096 215 NNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTT--------------VKVWDFARCQE--ERSLTG--HGWDVKSV 276 (715)
Q Consensus 215 ~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~--------------V~iwdl~~~~~--~~~l~~--~~~~I~si 276 (715)
+++++.+... .....+..++|++| +.|+.++.|+. |++|++.+... ...+.. +...+.++
T Consensus 196 l~tg~~~~~~-~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~ 273 (741)
T 1yr2_A 196 VADGKPLADE-LKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGA 273 (741)
T ss_dssp TTTCCEEEEE-EEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEE
T ss_pred CCCCCCCCcc-CCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEE
Confidence 9998875431 12222467899999 99988887654 89999976652 223332 23358899
Q ss_pred EEcCCCCEEEEEeCCC-----cEEEEECCCC--ceeEEeccCCCceEEEEEcCCCCEEEEEECC----CeEEEEECCCC-
Q 005096 277 DWHPTKSLLVSGGKDS-----LVKLWDAKSG--RELCSFHGHKNMVLCVKWNQNGNWVLTASKD----QIIKLYDIRAM- 344 (715)
Q Consensus 277 ~~spdg~~L~sgs~Dg-----~I~iwDl~s~--~~~~~~~~~~~~I~sl~~spdg~~Lasgs~d----g~I~iwDl~t~- 344 (715)
.|++||++|++.+.++ .|++||+.++ ++...+..+...+.... +++++.|+..+.+ +.|.+||+.++
T Consensus 274 ~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~ 352 (741)
T 1yr2_A 274 SVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGST 352 (741)
T ss_dssp EECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSS
T ss_pred EECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCc
Confidence 9999999888877544 8999999876 41445544444455553 4889988887754 45999999874
Q ss_pred -eEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeec-cCCCEEEEEEcCCCCEEE-EEE---C
Q 005096 345 -KELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNV-HDNTVWDLAWHPIGYLLC-SGS---N 418 (715)
Q Consensus 345 -~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~-h~~~V~~l~~spdg~~L~-sgs---~ 418 (715)
+....+..+...+..++|+ ++.++++...|+..+||.++........+.. ..+.|..+++++++..|+ +.+ .
T Consensus 353 ~~~~~l~~~~~~~l~~~~~~--~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~ 430 (741)
T 1yr2_A 353 PRFDTVVPESKDNLESVGIA--GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQ 430 (741)
T ss_dssp CEEEEEECCCSSEEEEEEEE--BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTE
T ss_pred cccEEEecCCCCeEEEEEEE--CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCC
Confidence 3334444444556677876 5778889999998888766532333333332 356788999999886555 333 2
Q ss_pred CCeEEEEecCCC
Q 005096 419 DHTTKFWCRNRP 430 (715)
Q Consensus 419 Dg~I~iWdl~~~ 430 (715)
.++|++||+...
T Consensus 431 P~~i~~~d~~tg 442 (741)
T 1yr2_A 431 PATVLALDPATA 442 (741)
T ss_dssp EEEEEEEETTTT
T ss_pred CCEEEEEECCCC
Confidence 478999998653
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=5.9e-13 Score=137.51 Aligned_cols=239 Identities=6% Similarity=-0.040 Sum_probs=175.8
Q ss_pred ccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeee-cCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCee
Q 005096 184 AHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANK-SAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQE 262 (715)
Q Consensus 184 ~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~-~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~ 262 (715)
.+...+.+++++++++++++...++.|.+||.. +...... ......+.++++.++++++++...++.|..||......
T Consensus 12 ~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~ 90 (299)
T 2z2n_A 12 NQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKKGIIK 90 (299)
T ss_dssp SSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTSCEE
T ss_pred CcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCCCcEE
Confidence 345679999999999988777668899999988 5543322 23456799999999998887777788999999863222
Q ss_pred EEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEE-eccCCCceEEEEEcCCCCEEEEEECCCeEEEEEC
Q 005096 263 ERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCS-FHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDI 341 (715)
Q Consensus 263 ~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~-~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl 341 (715)
...+......+.+++++++++++++...++.|.+||. +++.... .......+.+++++++++++++...++.|.+||.
T Consensus 91 ~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~ 169 (299)
T 2z2n_A 91 EYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE 169 (299)
T ss_dssp EEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT
T ss_pred EEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC
Confidence 2222234567899999999988887777889999998 5544332 2234467899999999987777767789999998
Q ss_pred CCCeEEEE-eecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCC
Q 005096 342 RAMKELES-FRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDH 420 (715)
Q Consensus 342 ~t~~~~~~-~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg 420 (715)
+++.... +......+.++++++ +++++++...++.|.+||. ++.........+...+.+++++++|+++++...++
T Consensus 170 -~g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~ 246 (299)
T 2z2n_A 170 -SGDITEFKIPTPASGPVGITKGN-DDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEWGAN 246 (299)
T ss_dssp -TCCEEEEECSSTTCCEEEEEECT-TSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTT
T ss_pred -CCcEEEeeCCCCCCcceeEEECC-CCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEeccCCc
Confidence 6655432 333456788999998 6777777767889999998 44422221223456799999999998777766789
Q ss_pred eEEEEec
Q 005096 421 TTKFWCR 427 (715)
Q Consensus 421 ~I~iWdl 427 (715)
.|.+|+.
T Consensus 247 ~i~~~d~ 253 (299)
T 2z2n_A 247 KIGRLTS 253 (299)
T ss_dssp EEEEEET
T ss_pred eEEEECC
Confidence 9999987
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.63 E-value=1.8e-13 Score=147.41 Aligned_cols=273 Identities=10% Similarity=0.013 Sum_probs=193.8
Q ss_pred EEcCCCCEEEEEeC-----CCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEe----------CCCcEEEEeC
Q 005096 151 LWTPTGRRLITGSQ-----SGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGD----------DGGAIKYWQN 215 (715)
Q Consensus 151 ~~spdg~~Latgs~-----dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs----------~dg~I~iwd~ 215 (715)
...|++++|++... ++.|.++|..+++.+..+..-... . +++++|+++|++++ .++.|.+||.
T Consensus 39 ~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~ 116 (386)
T 3sjl_D 39 APAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDP 116 (386)
T ss_dssp CCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECT
T ss_pred ccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEEC
Confidence 44688998888876 679999999999999988865565 4 99999999887765 3678999999
Q ss_pred CCCceeeeecCC-------CCCeEEEEEecCCCEEEEEEC--CCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEE
Q 005096 216 NMNNVKANKSAH-------KESVRDLSFCRTDLKFCSCSD--DTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLV 286 (715)
Q Consensus 216 ~~~~~~~~~~~h-------~~~I~~l~~spd~~~Las~s~--Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~ 286 (715)
.+.+.+..+... ...-..++|++|+++|+++.. ++.|.++|+.+.+.+.++..... ...+....+.++
T Consensus 117 ~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~---~~~~P~g~~~~~ 193 (386)
T 3sjl_D 117 VTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC---YHIFPTAPDTFF 193 (386)
T ss_dssp TTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE---EEEEEEETTEEE
T ss_pred CCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCc---ceeecCCCceeE
Confidence 999887776432 124567999999999998874 68999999999999888854321 222333456777
Q ss_pred EEeCCCcEEEEECCC-CceeEEeccC----CCce-EEEEEc-CCCCEEEEEECCCeEEEEECCCCe--EEEEeec-----
Q 005096 287 SGGKDSLVKLWDAKS-GRELCSFHGH----KNMV-LCVKWN-QNGNWVLTASKDQIIKLYDIRAMK--ELESFRG----- 352 (715)
Q Consensus 287 sgs~Dg~I~iwDl~s-~~~~~~~~~~----~~~I-~sl~~s-pdg~~Lasgs~dg~I~iwDl~t~~--~~~~~~~----- 352 (715)
+.+.||.+.+.++.+ ++.+...... ...+ ....|. ++|++++ .+.+|.|++.|+.+.. .+..+..
T Consensus 194 ~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~ 272 (386)
T 3sjl_D 194 MHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAE 272 (386)
T ss_dssp EEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHH
T ss_pred EECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceecccccc
Confidence 888899999999976 5543322111 1112 124564 5775544 5668999999997653 3333320
Q ss_pred -----CCCCeEEEEEccCCCCEEEEEeC---------CCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCC-EEEEEE
Q 005096 353 -----HRKDVTALAWHPFHEEYFVSGSL---------DGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGY-LLCSGS 417 (715)
Q Consensus 353 -----h~~~V~~l~~sp~~~~~l~sgs~---------DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~-~L~sgs 417 (715)
.......++++++.++++++... .++|.++|..+.+.+.++..++ .++.|++++|++ +|+++.
T Consensus 273 ~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~--~~~~lavs~D~~~~ly~tn 350 (386)
T 3sjl_D 273 RADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGH--EIDSINVSQDEKPLLYALS 350 (386)
T ss_dssp HHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE--EECEEEECSSSSCEEEEEE
T ss_pred ccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCC--CcceEEECCCCCeEEEEEc
Confidence 11234457778844444444321 2479999999988887776643 788999999986 666654
Q ss_pred -CCCeEEEEecCCCC
Q 005096 418 -NDHTTKFWCRNRPG 431 (715)
Q Consensus 418 -~Dg~I~iWdl~~~~ 431 (715)
.++.|.++|....+
T Consensus 351 ~~~~~VsViD~~t~k 365 (386)
T 3sjl_D 351 TGDKTLYIHDAESGE 365 (386)
T ss_dssp TTTTEEEEEETTTCC
T ss_pred CCCCeEEEEECCCCc
Confidence 58999999987544
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.62 E-value=5e-14 Score=166.53 Aligned_cols=242 Identities=10% Similarity=-0.047 Sum_probs=168.0
Q ss_pred CCccEEEEEEcCCCCEEEEEeCC-----CeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCc--------
Q 005096 143 NRCSINRVLWTPTGRRLITGSQS-----GEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGA-------- 209 (715)
Q Consensus 143 H~~~I~~l~~spdg~~Latgs~d-----g~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~-------- 209 (715)
|...+.+++|||||++||.++.+ ..|+|||+++++.+... .+...+..++|++| +.|+.++.++.
T Consensus 161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~-~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~ 238 (741)
T 1yr2_A 161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADE-LKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQA 238 (741)
T ss_dssp --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEE-EEEEESCCCEESTT-SEEEEEECCCC--------
T ss_pred CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCcc-CCCceeccEEEECC-CEEEEEEecCccccccccc
Confidence 44578999999999999987654 36999999998876542 12222357899999 98888776554
Q ss_pred ------EEEEeCCCCce--eeee--cCCCCCeEEEEEecCCCEEEEEECCC-----cEEEEECCCCe-e-EEEecccCCc
Q 005096 210 ------IKYWQNNMNNV--KANK--SAHKESVRDLSFCRTDLKFCSCSDDT-----TVKVWDFARCQ-E-ERSLTGHGWD 272 (715)
Q Consensus 210 ------I~iwd~~~~~~--~~~~--~~h~~~I~~l~~spd~~~Las~s~Dg-----~V~iwdl~~~~-~-~~~l~~~~~~ 272 (715)
|++|++.++.. ...+ ..+...+..+.|++|+++|+..+.++ .|++||+.++. . ...+..+...
T Consensus 239 ~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~ 318 (741)
T 1yr2_A 239 LNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKA 318 (741)
T ss_dssp CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSS
T ss_pred CCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCc
Confidence 88999877642 2222 22334588999999999988877543 89999998762 2 4455545545
Q ss_pred eEEEEEcCCCCEEEEEeCC----CcEEEEECCCC--ceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECC-CCe
Q 005096 273 VKSVDWHPTKSLLVSGGKD----SLVKLWDAKSG--RELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIR-AMK 345 (715)
Q Consensus 273 I~si~~spdg~~L~sgs~D----g~I~iwDl~s~--~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~-t~~ 345 (715)
+.... +++++.|++.+.+ +.|.+||++++ +....+..+...+..++|+ ++.++++...|+..+||.+. +++
T Consensus 319 ~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~ 396 (741)
T 1yr2_A 319 QWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGK 396 (741)
T ss_dssp CEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSC
T ss_pred eEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCC
Confidence 55553 4788888887764 45999999874 3333444455567788887 56677788888887777554 466
Q ss_pred EEEEeec-CCCCeEEEEEccCCCCEEEEEeC---CCcEEEEEcCCCC
Q 005096 346 ELESFRG-HRKDVTALAWHPFHEEYFVSGSL---DGSIFHWLVGHET 388 (715)
Q Consensus 346 ~~~~~~~-h~~~V~~l~~sp~~~~~l~sgs~---DG~I~iwd~~~~~ 388 (715)
.+..+.. ....|..+++++++..++++.+. .++|++||+.++.
T Consensus 397 ~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 397 PAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp EEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred ceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 6666654 35678899999955555555443 3689999997654
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.61 E-value=6e-13 Score=138.98 Aligned_cols=240 Identities=10% Similarity=0.065 Sum_probs=168.8
Q ss_pred CCCEEEEEEcCCCCEEEE-------EeCCCcEEEEeCCCCceeeeec----CCCCCeEEEEEecC-CCEEEEEECCCcEE
Q 005096 186 DHAIRSMVWSHNDNWMVS-------GDDGGAIKYWQNNMNNVKANKS----AHKESVRDLSFCRT-DLKFCSCSDDTTVK 253 (715)
Q Consensus 186 ~~~V~~l~~spdg~~L~t-------gs~dg~I~iwd~~~~~~~~~~~----~h~~~I~~l~~spd-~~~Las~s~Dg~V~ 253 (715)
-....+++|+++++++++ +..++.|.+||..+++...... .+...+.+++++++ ++ |++++.++.|.
T Consensus 17 ~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~-l~v~~~~~~l~ 95 (314)
T 1pjx_A 17 IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQ-LFVADMRLGLL 95 (314)
T ss_dssp CTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSE-EEEEETTTEEE
T ss_pred CCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCc-EEEEECCCCEE
Confidence 345679999988888777 5678899999988776543322 24467899999998 55 44455455799
Q ss_pred EEECCCCeeEEE-ecc----cCCceEEEEEcCCCCEEEEEeCC---------------CcEEEEECCCCceeEEeccCCC
Q 005096 254 VWDFARCQEERS-LTG----HGWDVKSVDWHPTKSLLVSGGKD---------------SLVKLWDAKSGRELCSFHGHKN 313 (715)
Q Consensus 254 iwdl~~~~~~~~-l~~----~~~~I~si~~spdg~~L~sgs~D---------------g~I~iwDl~s~~~~~~~~~~~~ 313 (715)
+||.+ ++.... ... ....+.+++++++++++++...+ +.|..||.+ ++..... ....
T Consensus 96 ~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~-~~~~ 172 (314)
T 1pjx_A 96 VVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVD-TAFQ 172 (314)
T ss_dssp EEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEE-EEES
T ss_pred EEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEec-cCCC
Confidence 99988 654433 221 12458899999999887776654 567777766 5443322 2334
Q ss_pred ceEEEEEc----CCCCEEEEEE-CCCeEEEEECC-CCeE-----EEEeecCC-CCeEEEEEccCCCCEEEEEeCCCcEEE
Q 005096 314 MVLCVKWN----QNGNWVLTAS-KDQIIKLYDIR-AMKE-----LESFRGHR-KDVTALAWHPFHEEYFVSGSLDGSIFH 381 (715)
Q Consensus 314 ~I~sl~~s----pdg~~Lasgs-~dg~I~iwDl~-t~~~-----~~~~~~h~-~~V~~l~~sp~~~~~l~sgs~DG~I~i 381 (715)
....++|+ ++++.|+++. .++.|.+||++ +++. +..+..+. ..+..+++++ +++++++...++.|.+
T Consensus 173 ~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~-~G~l~v~~~~~~~i~~ 251 (314)
T 1pjx_A 173 FPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDE-DNNLLVANWGSSHIEV 251 (314)
T ss_dssp SEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBT-TCCEEEEEETTTEEEE
T ss_pred CcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECC-CCCEEEEEcCCCEEEE
Confidence 56889999 9997666654 67899999986 4442 23333333 5688999998 7788888888899999
Q ss_pred EEcCCCCceEEEeeccCCCEEEEEEcCCCCEE-EEEECCCeEEEEecCCCC
Q 005096 382 WLVGHETPQVEIHNVHDNTVWDLAWHPIGYLL-CSGSNDHTTKFWCRNRPG 431 (715)
Q Consensus 382 wd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L-~sgs~Dg~I~iWdl~~~~ 431 (715)
||.+++.....+ ..+...+.+++|+++++.| ++...++.|..|+++..+
T Consensus 252 ~d~~~g~~~~~~-~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~g 301 (314)
T 1pjx_A 252 FGPDGGQPKMRI-RCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRNG 301 (314)
T ss_dssp ECTTCBSCSEEE-ECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSCB
T ss_pred EcCCCCcEeEEE-eCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCCCC
Confidence 998755544333 3455789999999999855 455566899999987543
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.57 E-value=2.7e-12 Score=134.10 Aligned_cols=230 Identities=9% Similarity=0.109 Sum_probs=160.5
Q ss_pred CCCccEEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCce
Q 005096 142 KNRCSINRVLWTPTGR-RLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNV 220 (715)
Q Consensus 142 ~H~~~I~~l~~spdg~-~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~ 220 (715)
.+..-..+..|++++. ++++...++.|+.||..+++.. .+ .....+.+++++++++++++ . ++.|.+||.++++.
T Consensus 10 ~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~-~~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~ 85 (297)
T 3g4e_A 10 ENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RV-TMDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQSA 85 (297)
T ss_dssp CCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EE-ECSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEE
T ss_pred cCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EE-eCCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCcE
Confidence 3444567899999655 5556667889999999887653 23 24578999999999995554 4 56899999988765
Q ss_pred eeeecC----CCCCeEEEEEecCCCEEEEEECC---------CcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEE
Q 005096 221 KANKSA----HKESVRDLSFCRTDLKFCSCSDD---------TTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVS 287 (715)
Q Consensus 221 ~~~~~~----h~~~I~~l~~spd~~~Las~s~D---------g~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~s 287 (715)
...... ....+++++++++++++++...+ ....||.+........+.......+.++|++|++.|++
T Consensus 86 ~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~spdg~~lyv 165 (297)
T 3g4e_A 86 VVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSLDHKIFYY 165 (297)
T ss_dssp EEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECTTSCEEEE
T ss_pred EEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEcCCCCEEEE
Confidence 443322 22458899999999976654322 23455555432222333333445689999999987654
Q ss_pred -EeCCCcEEEEEC--CCCce-----eEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEE
Q 005096 288 -GGKDSLVKLWDA--KSGRE-----LCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTA 359 (715)
Q Consensus 288 -gs~Dg~I~iwDl--~s~~~-----~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~ 359 (715)
.+.++.|.+||+ .+++. +..+.........++++++|++.++...++.|.+||.++++.+..+......+++
T Consensus 166 ~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~ 245 (297)
T 3g4e_A 166 IDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTTS 245 (297)
T ss_dssp EEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSBEEE
T ss_pred ecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCceE
Confidence 455788999987 45543 2222333456889999999988887778889999999999999999888888999
Q ss_pred EEEc-cCCCCEEEEEeC
Q 005096 360 LAWH-PFHEEYFVSGSL 375 (715)
Q Consensus 360 l~~s-p~~~~~l~sgs~ 375 (715)
++|. ++.+.++++...
T Consensus 246 ~~f~g~d~~~L~vt~~~ 262 (297)
T 3g4e_A 246 CCFGGKNYSEMYVTCAR 262 (297)
T ss_dssp EEEESGGGCEEEEEEBC
T ss_pred EEEeCCCCCEEEEEcCC
Confidence 9998 644445555543
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.57 E-value=8e-13 Score=144.71 Aligned_cols=272 Identities=10% Similarity=0.041 Sum_probs=194.4
Q ss_pred CCCCEEEEEeCC-----CeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEe----------CCCcEEEEeCCCC
Q 005096 154 PTGRRLITGSQS-----GEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGD----------DGGAIKYWQNNMN 218 (715)
Q Consensus 154 pdg~~Latgs~d-----g~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs----------~dg~I~iwd~~~~ 218 (715)
+++++++++... +.|.++|..+.+.+..+..-... .+++++|+++|+++. .++.|.++|..+.
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~ 159 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF 159 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence 466777766553 69999999999999998876666 899999999888776 4678999999999
Q ss_pred ceeeeecCC-------CCCeEEEEEecCCCEEEEEEC--CCcEEEEECCCCeeEEEecccCCceEEEEEcCCC-CEEEEE
Q 005096 219 NVKANKSAH-------KESVRDLSFCRTDLKFCSCSD--DTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTK-SLLVSG 288 (715)
Q Consensus 219 ~~~~~~~~h-------~~~I~~l~~spd~~~Las~s~--Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg-~~L~sg 288 (715)
+.+..+... ......+.|++|+++|+++.. ++.|.++|+.+.+.+..+..... ....+++ ..+++.
T Consensus 160 ~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~----~~~~p~g~~~~v~~ 235 (426)
T 3c75_H 160 LPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC----YHIFPASPTVFYMN 235 (426)
T ss_dssp CEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE----EEEEEEETTEEEEE
T ss_pred cEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc----eeeccCCCcEEEEE
Confidence 887766432 234567899999999999875 57899999999998888764321 2233333 566777
Q ss_pred eCCCcEEEEECCCCceeEE----eccCCCc-eEEEEEcCCCCEEEEEECCCeEEEEECCCCeEE--EEeecC--------
Q 005096 289 GKDSLVKLWDAKSGRELCS----FHGHKNM-VLCVKWNQNGNWVLTASKDQIIKLYDIRAMKEL--ESFRGH-------- 353 (715)
Q Consensus 289 s~Dg~I~iwDl~s~~~~~~----~~~~~~~-I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~--~~~~~h-------- 353 (715)
+.||.+.+.|+.+++.... +...... ...+.|.++++.++..+.++.|.+.|+...... ..+...
T Consensus 236 ~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g 315 (426)
T 3c75_H 236 CRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADD 315 (426)
T ss_dssp ETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGT
T ss_pred cCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccc
Confidence 7888888888866655432 1111111 123567889888888888999999999754421 111110
Q ss_pred --CCCeEEEEEccCCCCEEEEEeC---------CCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCC-EEEEEE-CCC
Q 005096 354 --RKDVTALAWHPFHEEYFVSGSL---------DGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGY-LLCSGS-NDH 420 (715)
Q Consensus 354 --~~~V~~l~~sp~~~~~l~sgs~---------DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~-~L~sgs-~Dg 420 (715)
......+++++++.+++++... ++.|.++|..+.+.+..+..+. ..+++.|++|++ +|++.. .++
T Consensus 316 ~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~--~P~gia~spDg~~~lyv~n~~s~ 393 (426)
T 3c75_H 316 WRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGH--EIDSINVSQDAEPLLYALSAGTQ 393 (426)
T ss_dssp EEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE--EECEEEECCSSSCEEEEEETTTT
T ss_pred cccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCC--CcCeEEEccCCCEEEEEEcCCCC
Confidence 1112237889854555554431 3579999999988777765433 588999999998 888888 599
Q ss_pred eEEEEecCCCCCc
Q 005096 421 TTKFWCRNRPGDT 433 (715)
Q Consensus 421 ~I~iWdl~~~~~~ 433 (715)
.|.++|.......
T Consensus 394 ~VsVID~~t~kvv 406 (426)
T 3c75_H 394 TLHIYDAATGEEL 406 (426)
T ss_dssp EEEEEETTTCCEE
T ss_pred eEEEEECCCCCEE
Confidence 9999999765443
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.5e-12 Score=142.76 Aligned_cols=234 Identities=9% Similarity=0.034 Sum_probs=168.7
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCC--cEEEEeCCCCceee
Q 005096 145 CSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGG--AIKYWQNNMNNVKA 222 (715)
Q Consensus 145 ~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg--~I~iwd~~~~~~~~ 222 (715)
.....|+|+++++++++...++.|++||.+++........... .. ++|++++++|++++.++ .|.+|+...+....
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~-~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~ 208 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKG-GK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPT 208 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCB-CB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEE
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCC-Cc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeE
Confidence 4688999999998777777789999999998877666555333 33 99999999998888766 78888877654433
Q ss_pred ee----cCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEE----ecccCCce--EEEEEcCC-CCEEEEEeCC
Q 005096 223 NK----SAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERS----LTGHGWDV--KSVDWHPT-KSLLVSGGKD 291 (715)
Q Consensus 223 ~~----~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~----l~~~~~~I--~si~~spd-g~~L~sgs~D 291 (715)
.+ ......+.++++++++..|+++..++.|+.||..+...... ..+..... ..++|+++ +.++++...+
T Consensus 209 ~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~ 288 (409)
T 3hrp_A 209 RIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNL 288 (409)
T ss_dssp EEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTT
T ss_pred EeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCC
Confidence 33 22456788999999666666677788999999987654332 22222222 29999995 5555555667
Q ss_pred CcEEEEECCCCceeEEeccC---------------CCceEEEEEcCCCCEEEEEE-CCCeEEEEECCCCeEEEEeecC--
Q 005096 292 SLVKLWDAKSGRELCSFHGH---------------KNMVLCVKWNQNGNWVLTAS-KDQIIKLYDIRAMKELESFRGH-- 353 (715)
Q Consensus 292 g~I~iwDl~s~~~~~~~~~~---------------~~~I~sl~~spdg~~Lasgs-~dg~I~iwDl~t~~~~~~~~~h-- 353 (715)
+.|+.||.+.. +..+.++ -.....++|+++++++++-. .++.|++||+.+++.. .+.++
T Consensus 289 ~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~-~~~g~~~ 365 (409)
T 3hrp_A 289 SSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVS-TVAGQVD 365 (409)
T ss_dssp TEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEE-EEEECTT
T ss_pred CEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEE-EEeCCCC
Confidence 88999997643 3333222 13478999999999777766 7889999998877643 33333
Q ss_pred -------------CCCeEEEEEccCCCCEEEEEeCCCcEEEEEc
Q 005096 354 -------------RKDVTALAWHPFHEEYFVSGSLDGSIFHWLV 384 (715)
Q Consensus 354 -------------~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~ 384 (715)
-.....|++++ ++.++++-..+++|+.+++
T Consensus 366 ~~g~~~g~~~~~~~~~P~giavd~-~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 366 VASQIDGTPLEATFNYPYDICYDG-EGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp CBSCCCBSTTTCCBSSEEEEEECS-SSEEEEEESTTCEEEEEEE
T ss_pred CCCcCCCChhceEeCCceEEEEcC-CCCEEEEECCCCeEEEEEe
Confidence 24578999998 5788888888888888765
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.4e-11 Score=127.15 Aligned_cols=237 Identities=6% Similarity=-0.067 Sum_probs=173.0
Q ss_pred cCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeee-ecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeE
Q 005096 185 HDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKAN-KSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEE 263 (715)
Q Consensus 185 h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~-~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~ 263 (715)
....+.++++.++++++++...++.|.+||.. ++.... +......+.++++.++++++++...++.|.+||.. ++..
T Consensus 18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~ 95 (300)
T 2qc5_A 18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFT 95 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE
T ss_pred CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeE
Confidence 35678999999999988877778999999988 554432 22334678999999999877776668899999987 4443
Q ss_pred E-EecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEE-eccCCCceEEEEEcCCCCEEEEEECCCeEEEEEC
Q 005096 264 R-SLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCS-FHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDI 341 (715)
Q Consensus 264 ~-~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~-~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl 341 (715)
. .+......+.+++++++++++++...++.|..||.+ ++.... +......+.+++++++++++++...++.|.+||.
T Consensus 96 ~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~ 174 (300)
T 2qc5_A 96 EYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN 174 (300)
T ss_dssp EEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT
T ss_pred EecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC
Confidence 2 222234678999999999888777768899999987 554422 2334567899999999996666656789999998
Q ss_pred CCCeEEEE-eecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCC
Q 005096 342 RAMKELES-FRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDH 420 (715)
Q Consensus 342 ~t~~~~~~-~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg 420 (715)
+++.... .......+.++++++ +++++++...++.|.+||. ++.............+.+++++++|+++++...++
T Consensus 175 -~g~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~ 251 (300)
T 2qc5_A 175 -TGKLEEYPLPTNAAAPVGITSGN-DGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWGAN 251 (300)
T ss_dssp -TCCEEEEECSSTTCCEEEEEECT-TSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTT
T ss_pred -CCcEEEeeCCCCCCCcceEEECC-CCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccCCC
Confidence 4554432 223446789999998 6777777777778999998 33322222223456789999999998777766679
Q ss_pred eEEEEec
Q 005096 421 TTKFWCR 427 (715)
Q Consensus 421 ~I~iWdl 427 (715)
.|.+|+.
T Consensus 252 ~i~~~~~ 258 (300)
T 2qc5_A 252 QIGRITN 258 (300)
T ss_dssp EEEEECT
T ss_pred eEEEECC
Confidence 9999987
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.54 E-value=5e-12 Score=138.61 Aligned_cols=234 Identities=9% Similarity=0.045 Sum_probs=168.1
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCC--cEEEEECCCCeeEE
Q 005096 187 HAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDT--TVKVWDFARCQEER 264 (715)
Q Consensus 187 ~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg--~V~iwdl~~~~~~~ 264 (715)
.....|+|+++++++++...++.|++||.+++.+....... .... ++|+++++.|+++..++ .|.+||........
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~-~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~ 208 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGF-KGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPT 208 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETC-CBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEE
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccC-CCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeE
Confidence 46789999999987777777899999999988776555443 3334 99999999999988866 79999886654433
Q ss_pred Ee----cccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEE----eccCCCce--EEEEEcCC-CCEEEEEECC
Q 005096 265 SL----TGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCS----FHGHKNMV--LCVKWNQN-GNWVLTASKD 333 (715)
Q Consensus 265 ~l----~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~----~~~~~~~I--~sl~~spd-g~~Lasgs~d 333 (715)
.+ ......+.++++++++..|+++..++.|+.||.+++..... ..+..... ..++|+++ +.++++-..+
T Consensus 209 ~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~ 288 (409)
T 3hrp_A 209 RIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNL 288 (409)
T ss_dssp EEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTT
T ss_pred EeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCC
Confidence 33 22456788999999666666677788999999987764332 22222222 28999995 4545555567
Q ss_pred CeEEEEECCCCeEEEEeecCC---------------CCeEEEEEccCCCCEEEEEe-CCCcEEEEEcCCCCceEEEeecc
Q 005096 334 QIIKLYDIRAMKELESFRGHR---------------KDVTALAWHPFHEEYFVSGS-LDGSIFHWLVGHETPQVEIHNVH 397 (715)
Q Consensus 334 g~I~iwDl~t~~~~~~~~~h~---------------~~V~~l~~sp~~~~~l~sgs-~DG~I~iwd~~~~~~~~~~~~~h 397 (715)
+.|+.||.... +..+.++. .....|++++ +++++++-. .+++|++|++.++.. ..+.++
T Consensus 289 ~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~-dG~lyvad~~~~~~I~~~~~~~G~v--~~~~g~ 363 (409)
T 3hrp_A 289 SSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDE-DGNFYIVDGFKGYCLRKLDILDGYV--STVAGQ 363 (409)
T ss_dssp TEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECT-TCCEEEEETTTTCEEEEEETTTTEE--EEEEEC
T ss_pred CEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeC-CCCEEEEeCCCCCEEEEEECCCCEE--EEEeCC
Confidence 89999997643 33333322 3478999999 677888877 889999999765542 222222
Q ss_pred ---------------CCCEEEEEEcCCCCEEEEEECCCeEEEEec
Q 005096 398 ---------------DNTVWDLAWHPIGYLLCSGSNDHTTKFWCR 427 (715)
Q Consensus 398 ---------------~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl 427 (715)
-.....|++++++.++++-..++.|+.+++
T Consensus 364 ~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 364 VDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp TTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred CCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 246899999999988888888899998876
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.53 E-value=2.1e-11 Score=132.02 Aligned_cols=237 Identities=7% Similarity=-0.063 Sum_probs=168.6
Q ss_pred EEEEcCCCCEEEEEe----------CCCeEEEEeCCCCceEEEEecc-------CCCEEEEEEcCCCCEEEEEeC--CCc
Q 005096 149 RVLWTPTGRRLITGS----------QSGEFTLWNGQSFNFEMILQAH-------DHAIRSMVWSHNDNWMVSGDD--GGA 209 (715)
Q Consensus 149 ~l~~spdg~~Latgs----------~dg~I~Iwd~~~~~~~~~l~~h-------~~~V~~l~~spdg~~L~tgs~--dg~ 209 (715)
.++|++||++|+++. .++.|.+||..+.+.+..+... ...-..++|++|+++|++++. ++.
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~ 149 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPA 149 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCe
Confidence 899999999999886 3678999999998888776542 123458999999999998874 478
Q ss_pred EEEEeCCCCceeee-ecCCCCCeEEEEEecCC-CEEEEEECCCcEEEEECCCCeeEEEec-----ccCCc-eEEEEEcCC
Q 005096 210 IKYWQNNMNNVKAN-KSAHKESVRDLSFCRTD-LKFCSCSDDTTVKVWDFARCQEERSLT-----GHGWD-VKSVDWHPT 281 (715)
Q Consensus 210 I~iwd~~~~~~~~~-~~~h~~~I~~l~~spd~-~~Las~s~Dg~V~iwdl~~~~~~~~l~-----~~~~~-I~si~~spd 281 (715)
|.++| .+++.+.. +... . ++.+.+++ ..+++.+.||.+.+||. +++.+.... ..... .....+.++
T Consensus 150 v~viD-~t~~~~~~~i~~~-~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~ 223 (373)
T 2mad_H 150 VGLVV-QGGSSDDQLLSSP-T---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANK 223 (373)
T ss_pred EEEEE-CCCCEEeEEcCCC-c---eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEec
Confidence 99999 99888766 4322 2 24444554 45677788999999999 776663322 11111 123456666
Q ss_pred CCEEEEEeCCCcEEEEECCCCc--eeEEecc----------CCCceEEEEEcCCCCEEEEEEC----------CCeEEEE
Q 005096 282 KSLLVSGGKDSLVKLWDAKSGR--ELCSFHG----------HKNMVLCVKWNQNGNWVLTASK----------DQIIKLY 339 (715)
Q Consensus 282 g~~L~sgs~Dg~I~iwDl~s~~--~~~~~~~----------~~~~I~sl~~spdg~~Lasgs~----------dg~I~iw 339 (715)
+..++..+.++.|.+.|+.+.. .+..+.. .......+.+++|++.|+++.. ++.|.++
T Consensus 224 ~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VI 303 (373)
T 2mad_H 224 SGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSV 303 (373)
T ss_pred CCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEE
Confidence 6655555578899999997553 2222211 0122344789999998888653 3579999
Q ss_pred ECCCCeEEEEeecCCCCeEEEEEccCCCC-EEEEEe-CCCcEEEEEcCCCCceEEE
Q 005096 340 DIRAMKELESFRGHRKDVTALAWHPFHEE-YFVSGS-LDGSIFHWLVGHETPQVEI 393 (715)
Q Consensus 340 Dl~t~~~~~~~~~h~~~V~~l~~sp~~~~-~l~sgs-~DG~I~iwd~~~~~~~~~~ 393 (715)
|+.+++.+.++.. .....+++|++ +++ +++++. .++.|.+||..+.+.+..+
T Consensus 304 D~~t~~vv~~i~~-g~~p~~i~~s~-Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 304 TGLVGQTSSQISL-GHDVDAISVAQ-DGGPDLYALSAGTEVLHIYDAGAGDQDQST 357 (373)
T ss_pred ECCCCEEEEEEEC-CCCcCeEEECC-CCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence 9999999998863 44689999999 555 777776 5899999999888766553
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.52 E-value=1.8e-13 Score=147.86 Aligned_cols=172 Identities=10% Similarity=0.059 Sum_probs=137.1
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc---------eEE-EEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005096 146 SINRVLWTPTGRRLITGSQSGEFTLWNGQSFN---------FEM-ILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQN 215 (715)
Q Consensus 146 ~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~---------~~~-~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~ 215 (715)
.++.++++++..+|++|+.++ ++||++++.+ ... ....+.. |+.|+| |+++|+++ .++.|++||+
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv 113 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLDL 113 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEES
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEc
Confidence 689999999999999999985 7779855433 111 2223556 999999 89999998 8899999999
Q ss_pred CCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEE
Q 005096 216 NMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVK 295 (715)
Q Consensus 216 ~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~ 295 (715)
.+.........+...+.++.+.+. .+++++.||.|.+||+.++.... +...|+|++|+++| +++|..||+|+
T Consensus 114 ~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~~vg~~dg~i~ 185 (388)
T 1xip_A 114 EELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--LAVLLKDRSFQ 185 (388)
T ss_dssp SSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE--EEEEETTSCEE
T ss_pred hhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc--eEEEEcCCcEE
Confidence 877655566667778888877654 38899999999999998776643 34589999999999 77899999999
Q ss_pred EEECCCCce--eEEe------c---cCCCceEEEEEcCCCCEEEEE
Q 005096 296 LWDAKSGRE--LCSF------H---GHKNMVLCVKWNQNGNWVLTA 330 (715)
Q Consensus 296 iwDl~s~~~--~~~~------~---~~~~~I~sl~~spdg~~Lasg 330 (715)
+|+.+.++. ..++ . +|...|.+|.|.+++.+|++=
T Consensus 186 ~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y 231 (388)
T 1xip_A 186 SFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF 231 (388)
T ss_dssp EEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred EEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEE
Confidence 999887765 5555 2 367889999999999888763
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.51 E-value=2.5e-11 Score=126.68 Aligned_cols=231 Identities=7% Similarity=0.058 Sum_probs=157.2
Q ss_pred EeccCCCEEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCC
Q 005096 182 LQAHDHAIRSMVWSHNDN-WMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARC 260 (715)
Q Consensus 182 l~~h~~~V~~l~~spdg~-~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~ 260 (715)
+.....-..+..|+++++ ++++...++.|..||..++.... + .....+.+++++++++++++ . ++.|.+||.+++
T Consensus 8 ~~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~-~~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g 83 (297)
T 3g4e_A 8 LPENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQR-V-TMDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQ 83 (297)
T ss_dssp ECCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEE-E-ECSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTT
T ss_pred eccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEE-E-eCCCceEEEEECCCCCEEEE-E-CCeEEEEECCCC
Confidence 333445567899998655 55666678999999998876532 2 24567999999999995544 4 568999999877
Q ss_pred eeEEEecc----cCCceEEEEEcCCCCEEEEEeCC---------CcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEE
Q 005096 261 QEERSLTG----HGWDVKSVDWHPTKSLLVSGGKD---------SLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWV 327 (715)
Q Consensus 261 ~~~~~l~~----~~~~I~si~~spdg~~L~sgs~D---------g~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~L 327 (715)
+....... ....+++++++++|+++++...+ ....||.+.....+..+.......+.++|++|++.|
T Consensus 84 ~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~spdg~~l 163 (297)
T 3g4e_A 84 SAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSLDHKIF 163 (297)
T ss_dssp EEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECTTSCEE
T ss_pred cEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEcCCCCEE
Confidence 65433322 12457899999999966654321 233455444322233333334457899999999977
Q ss_pred EEE-ECCCeEEEEEC--CCCeE-----EEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCC
Q 005096 328 LTA-SKDQIIKLYDI--RAMKE-----LESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDN 399 (715)
Q Consensus 328 asg-s~dg~I~iwDl--~t~~~-----~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~ 399 (715)
+++ +.++.|.+||+ .++.. +..+.........+++++ +++++++...++.|.+||.++++....+. .+..
T Consensus 164 yv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~-~G~lwva~~~~~~v~~~d~~tG~~~~~i~-~p~~ 241 (297)
T 3g4e_A 164 YYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDA-EGKLWVACYNGGRVIRLDPVTGKRLQTVK-LPVD 241 (297)
T ss_dssp EEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBT-TSCEEEEEETTTEEEEECTTTCCEEEEEE-CSSS
T ss_pred EEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECC-CCCEEEEEcCCCEEEEEcCCCceEEEEEE-CCCC
Confidence 655 45789999997 45543 223333445688999998 67888888888899999987666554443 4556
Q ss_pred CEEEEEEc-CCCCEEEEEEC
Q 005096 400 TVWDLAWH-PIGYLLCSGSN 418 (715)
Q Consensus 400 ~V~~l~~s-pdg~~L~sgs~ 418 (715)
.+++++|. +|++.|++++.
T Consensus 242 ~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 242 KTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp BEEEEEEESGGGCEEEEEEB
T ss_pred CceEEEEeCCCCCEEEEEcC
Confidence 89999998 78777666554
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.51 E-value=1.7e-11 Score=129.96 Aligned_cols=223 Identities=9% Similarity=-0.003 Sum_probs=155.0
Q ss_pred cEEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeee
Q 005096 146 SINRVLWTPTGR-RLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANK 224 (715)
Q Consensus 146 ~I~~l~~spdg~-~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~ 224 (715)
-..+.+|++++. ++++...++.|.+||.++++... +. ....+.+++|+++++++++. .+ .|.+||.++++.....
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~~-~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~ 125 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKTV-HA-LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHA 125 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE-EE-CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEE
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE-EE-CCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEe
Confidence 356789999755 45566678899999998775433 32 35689999999998877754 44 4999998887754332
Q ss_pred cC----CCCCeEEEEEecCCCEEEEEEC------CCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEE-eCCCc
Q 005096 225 SA----HKESVRDLSFCRTDLKFCSCSD------DTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSG-GKDSL 293 (715)
Q Consensus 225 ~~----h~~~I~~l~~spd~~~Las~s~------Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sg-s~Dg~ 293 (715)
.. ....+.+++++++++++++... .+.|..+| +++.. .+.........++|++|++.|+++ +.++.
T Consensus 126 ~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~-~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~ 202 (326)
T 2ghs_A 126 ELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVT-KLFADISIPNSICFSPDGTTGYFVDTKVNR 202 (326)
T ss_dssp CSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEE-EEEEEESSEEEEEECTTSCEEEEEETTTCE
T ss_pred eCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEE-EeeCCCcccCCeEEcCCCCEEEEEECCCCE
Confidence 21 1246889999999987665542 24566666 44433 332233456799999999877655 45688
Q ss_pred EEEEECC--CC-ce-----eEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEc-c
Q 005096 294 VKLWDAK--SG-RE-----LCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWH-P 364 (715)
Q Consensus 294 I~iwDl~--s~-~~-----~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~s-p 364 (715)
|.+||++ ++ +. +..+.........++++.+|+++++...++.|.+||. +++.+..+......+++++|+ +
T Consensus 203 I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~af~g~ 281 (326)
T 2ghs_A 203 LMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGP 281 (326)
T ss_dssp EEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEEST
T ss_pred EEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEEEEecC
Confidence 9999986 55 31 2223333456788999999987777767789999998 577778887777789999998 6
Q ss_pred CCCCEEEEEeCC
Q 005096 365 FHEEYFVSGSLD 376 (715)
Q Consensus 365 ~~~~~l~sgs~D 376 (715)
+.+.++++...+
T Consensus 282 d~~~L~vt~~~~ 293 (326)
T 2ghs_A 282 DASRLLVTSARE 293 (326)
T ss_dssp TSCEEEEEEBCT
T ss_pred CCCEEEEEecCC
Confidence 334444554444
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.51 E-value=1.6e-12 Score=140.00 Aligned_cols=253 Identities=8% Similarity=-0.002 Sum_probs=174.7
Q ss_pred EEEcCCCCEEEEEe----------CCCeEEEEeCCCCceEEEEeccC-------CCEEEEEEcCCCCEEEEEeC--CCcE
Q 005096 150 VLWTPTGRRLITGS----------QSGEFTLWNGQSFNFEMILQAHD-------HAIRSMVWSHNDNWMVSGDD--GGAI 210 (715)
Q Consensus 150 l~~spdg~~Latgs----------~dg~I~Iwd~~~~~~~~~l~~h~-------~~V~~l~~spdg~~L~tgs~--dg~I 210 (715)
+++++||++|++++ .++.|.+||..+.+.+..+.... ..-..++|++||++|+++.. ++.|
T Consensus 83 va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~V 162 (386)
T 3sjl_D 83 PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAV 162 (386)
T ss_dssp EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEE
T ss_pred EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeE
Confidence 99999999998876 36789999999999988875422 23457899999999988864 6899
Q ss_pred EEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCC-CeeEEEeccc----CCce-EEEEEc-CCCC
Q 005096 211 KYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFAR-CQEERSLTGH----GWDV-KSVDWH-PTKS 283 (715)
Q Consensus 211 ~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~-~~~~~~l~~~----~~~I-~si~~s-pdg~ 283 (715)
.|+|+.+++.+..+.... + ...+....+.+++.+.||++.++++.+ ++........ ...+ ...+|. ++|+
T Consensus 163 sVID~~t~~vv~tI~v~g--~-~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~ 239 (386)
T 3sjl_D 163 GVVDLEGKAFKRMLDVPD--C-YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGR 239 (386)
T ss_dssp EEEETTTTEEEEEEECCS--E-EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTE
T ss_pred EEEECCCCcEEEEEECCC--c-ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCc
Confidence 999999999888774322 1 233444556778888899999999876 4443221111 1122 124554 5665
Q ss_pred EEEEEeCCCcEEEEECCCCce--eEEecc----------CCCceEEEEEcCCCCEEEEEEC----------CCeEEEEEC
Q 005096 284 LLVSGGKDSLVKLWDAKSGRE--LCSFHG----------HKNMVLCVKWNQNGNWVLTASK----------DQIIKLYDI 341 (715)
Q Consensus 284 ~L~sgs~Dg~I~iwDl~s~~~--~~~~~~----------~~~~I~sl~~spdg~~Lasgs~----------dg~I~iwDl 341 (715)
+++ .+.+|.|+++|+.+... +..+.. ....+..++++++++.|++... .+.|.++|+
T Consensus 240 ~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~ 318 (386)
T 3sjl_D 240 LVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDA 318 (386)
T ss_dssp EEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEET
T ss_pred EEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEEC
Confidence 444 66689999999976542 222210 1122345777899998888753 257999999
Q ss_pred CCCeEEEEeecCCCCeEEEEEccCCCCEEEEE-eCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCC
Q 005096 342 RAMKELESFRGHRKDVTALAWHPFHEEYFVSG-SLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPI 409 (715)
Q Consensus 342 ~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sg-s~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd 409 (715)
++++.+.++... ..+..|++++++..+|+++ ..++.|.++|..+.+.+..+.. .+.-+.|.+++|
T Consensus 319 ~t~kv~~~i~vg-~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~--~~~p~~l~~s~d 384 (386)
T 3sjl_D 319 KTGERLAKFEMG-HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQ--LGHGPQVITTAD 384 (386)
T ss_dssp TTCCEEEEEEEE-EEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECC--CCSSCCEEEECC
T ss_pred CCCeEEEEEECC-CCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecC--CCCCceeEECCc
Confidence 999999888743 3688999999554466554 5589999999998876655543 223344555544
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=1.1e-12 Score=153.75 Aligned_cols=240 Identities=12% Similarity=0.057 Sum_probs=159.5
Q ss_pred cCCCEEEEEEcCCCCEEEEEe-----CCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCc--------
Q 005096 185 HDHAIRSMVWSHNDNWMVSGD-----DGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTT-------- 251 (715)
Q Consensus 185 h~~~V~~l~~spdg~~L~tgs-----~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~-------- 251 (715)
+...+..++||+|+++|+.+. .+..|+|||+++++.+... ........++|+ |++.|+.++.+..
T Consensus 127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~-~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~ 204 (693)
T 3iuj_A 127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETP-LKDVKFSGISWL-GNEGFFYSSYDKPDGSELSAR 204 (693)
T ss_dssp SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEE-EEEEESCCCEEE-TTTEEEEEESSCCC-------
T ss_pred CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccc-cCCceeccEEEe-CCCEEEEEEecCccccccccc
Confidence 445788899999999887432 2256999999998865431 111123578999 9999999887743
Q ss_pred -----EEEEECCCCee--EEEec--c-cCCceEEEEEcCCCCEEEEEeC----CCcEEEEECCCCc-eeEEeccCCCceE
Q 005096 252 -----VKVWDFARCQE--ERSLT--G-HGWDVKSVDWHPTKSLLVSGGK----DSLVKLWDAKSGR-ELCSFHGHKNMVL 316 (715)
Q Consensus 252 -----V~iwdl~~~~~--~~~l~--~-~~~~I~si~~spdg~~L~sgs~----Dg~I~iwDl~s~~-~~~~~~~~~~~I~ 316 (715)
|++|++.+... ...+. . +...+.++.|++|+++|+.... ++.|+++|+.++. ....+..+.....
T Consensus 205 ~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~ 284 (693)
T 3iuj_A 205 TDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADV 284 (693)
T ss_dssp CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCE
T ss_pred CCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceE
Confidence 99999976543 22222 2 3345788999999998765443 2589999998764 4455555555555
Q ss_pred EEEEcCCCCEEEEEEC-C---CeEEEEECCCCeE--EEEeecCCCCeEEEEEccCCCCEEEEEeCCC--cEEEEEcCCCC
Q 005096 317 CVKWNQNGNWVLTASK-D---QIIKLYDIRAMKE--LESFRGHRKDVTALAWHPFHEEYFVSGSLDG--SIFHWLVGHET 388 (715)
Q Consensus 317 sl~~spdg~~Lasgs~-d---g~I~iwDl~t~~~--~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG--~I~iwd~~~~~ 388 (715)
.. |+++++.|+..+. + +.|.++|+.++.. ...+..+...+. .|+++++.++++...++ .|++||++..
T Consensus 285 ~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~- 360 (693)
T 3iuj_A 285 SL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGK- 360 (693)
T ss_dssp EE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSC-
T ss_pred EE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCC-
Confidence 55 6666766665543 2 5799999987654 345555666655 77874444555555565 5788887643
Q ss_pred ceEEEeeccCCCEEEEEEcCCCCEEEEEECC----CeEEEEecCCC
Q 005096 389 PQVEIHNVHDNTVWDLAWHPIGYLLCSGSND----HTTKFWCRNRP 430 (715)
Q Consensus 389 ~~~~~~~~h~~~V~~l~~spdg~~L~sgs~D----g~I~iWdl~~~ 430 (715)
....+.....+.+..+.+++++..|+....+ ++|..||++..
T Consensus 361 ~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g 406 (693)
T 3iuj_A 361 RVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSG 406 (693)
T ss_dssp EEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTC
T ss_pred eeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCC
Confidence 2333333345567788888887766655544 78888988643
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=1.3e-12 Score=153.13 Aligned_cols=241 Identities=9% Similarity=0.045 Sum_probs=162.5
Q ss_pred CCCccEEEEEEcCCCCEEEEEeC-----CCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCc-------
Q 005096 142 KNRCSINRVLWTPTGRRLITGSQ-----SGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGA------- 209 (715)
Q Consensus 142 ~H~~~I~~l~~spdg~~Latgs~-----dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~------- 209 (715)
+|...|..++|||||++||.+.. +.+|+|||+++++.+... .+......++|+ |++.|+.++.+..
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~-~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~ 203 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETP-LKDVKFSGISWL-GNEGFFYSSYDKPDGSELSA 203 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEE-EEEEESCCCEEE-TTTEEEEEESSCCC------
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccc-cCCceeccEEEe-CCCEEEEEEecCcccccccc
Confidence 46668999999999999985432 257999999999865431 111112567999 9999988877743
Q ss_pred ------EEEEeCCCCce----eeeecC-CCCCeEEEEEecCCCEEEEEEC----CCcEEEEECCCCe-eEEEecccCCce
Q 005096 210 ------IKYWQNNMNNV----KANKSA-HKESVRDLSFCRTDLKFCSCSD----DTTVKVWDFARCQ-EERSLTGHGWDV 273 (715)
Q Consensus 210 ------I~iwd~~~~~~----~~~~~~-h~~~I~~l~~spd~~~Las~s~----Dg~V~iwdl~~~~-~~~~l~~~~~~I 273 (715)
|++|++.+... +..... +...+..+.|++|+++|+.... ++.|++||+.+.. ....+..+...+
T Consensus 204 ~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~ 283 (693)
T 3iuj_A 204 RTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDAD 283 (693)
T ss_dssp -CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSC
T ss_pred cCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCce
Confidence 99999887542 222223 3445788999999998865443 3589999997653 344555555555
Q ss_pred EEEEEcCCCCEEEEEeC-C---CcEEEEECCCCce--eEEeccCCCceEEEEEcCCCCEEEEEECCC---eEEEEECCCC
Q 005096 274 KSVDWHPTKSLLVSGGK-D---SLVKLWDAKSGRE--LCSFHGHKNMVLCVKWNQNGNWVLTASKDQ---IIKLYDIRAM 344 (715)
Q Consensus 274 ~si~~spdg~~L~sgs~-D---g~I~iwDl~s~~~--~~~~~~~~~~I~sl~~spdg~~Lasgs~dg---~I~iwDl~t~ 344 (715)
... |+++++.|+..+. + +.|.++|+.++.. ...+..+...+. .|++++++|+....++ .|++||+..+
T Consensus 284 ~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~ 360 (693)
T 3iuj_A 284 VSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGK 360 (693)
T ss_dssp EEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSC
T ss_pred EEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCC
Confidence 554 5666665555443 3 5799999987654 344554555554 8888898888766544 6899998854
Q ss_pred eEEEEee-cCCCCeEEEEEccCCCCEEEEEeCC---CcEEEEEcCCCC
Q 005096 345 KELESFR-GHRKDVTALAWHPFHEEYFVSGSLD---GSIFHWLVGHET 388 (715)
Q Consensus 345 ~~~~~~~-~h~~~V~~l~~sp~~~~~l~sgs~D---G~I~iwd~~~~~ 388 (715)
....+. .....+..+.+++++..++++.+.. ++|+.||+.++.
T Consensus 361 -~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~ 407 (693)
T 3iuj_A 361 -RVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGA 407 (693)
T ss_dssp -EEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred -eeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCe
Confidence 444443 2445677778887555666655432 689999987654
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.49 E-value=5.2e-13 Score=142.70 Aligned_cols=265 Identities=11% Similarity=0.023 Sum_probs=175.1
Q ss_pred ccEEEEEEcCCCCEEEEEeC--CCeEEEEeCCCCceEEEE-------eccCCCEEEEEEcCCCCEEEEEeC-----CCcE
Q 005096 145 CSINRVLWTPTGRRLITGSQ--SGEFTLWNGQSFNFEMIL-------QAHDHAIRSMVWSHNDNWMVSGDD-----GGAI 210 (715)
Q Consensus 145 ~~I~~l~~spdg~~Latgs~--dg~I~Iwd~~~~~~~~~l-------~~h~~~V~~l~~spdg~~L~tgs~-----dg~I 210 (715)
..+..|+++++|+++++... ++.++||.+.+++. ..+ ..+-..+..|+++++++++++-.. +..|
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~-~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i 95 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGL-IPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL 95 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEE-EESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCe-ecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence 67899999999998888642 34355555544443 222 124467999999999876665433 5789
Q ss_pred EEEeCCCCceeeeecCC------CCCeEEEEEecCCCEEEEE-E---CCCcEEEEECCCCeeEEEecccCCceE-EEEEc
Q 005096 211 KYWQNNMNNVKANKSAH------KESVRDLSFCRTDLKFCSC-S---DDTTVKVWDFARCQEERSLTGHGWDVK-SVDWH 279 (715)
Q Consensus 211 ~iwd~~~~~~~~~~~~h------~~~I~~l~~spd~~~Las~-s---~Dg~V~iwdl~~~~~~~~l~~~~~~I~-si~~s 279 (715)
.+||+.+++++..+... ...+..+++++++..++.+ . .++.|.+||+.+++..+.+..|..... ...+.
T Consensus 96 ~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~ 175 (343)
T 2qe8_A 96 VAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLV 175 (343)
T ss_dssp EEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCE
T ss_pred EEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCccccccccee
Confidence 99999988866555322 2356899999765555444 4 578999999988877776654322110 13344
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCC-eEEEEECC---CCe-----EEE--
Q 005096 280 PTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQ-IIKLYDIR---AMK-----ELE-- 348 (715)
Q Consensus 280 pdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg-~I~iwDl~---t~~-----~~~-- 348 (715)
.++..|.+.+.++.++.|. ..+..|+|++|+++|+++..++ .|..+|.. .+. ...
T Consensus 176 ~~g~~~~~~~~~g~~~~~~--------------~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 241 (343)
T 2qe8_A 176 IDGVPVQIGQPDGTVIRPH--------------LGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKI 241 (343)
T ss_dssp ETTEECBEECTTSCEECCC--------------CCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTC
T ss_pred ECCEEEEeccCCCceecee--------------cccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcce
Confidence 4676777777777776553 2367899999999999888766 55555532 110 000
Q ss_pred EeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEee-ccCCCEEEEEEcCCCCEEEEEECCCeEEEEe
Q 005096 349 SFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHN-VHDNTVWDLAWHPIGYLLCSGSNDHTTKFWC 426 (715)
Q Consensus 349 ~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~-~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWd 426 (715)
...++......+++++ +++++++...++.|.+||..++.. ..+.. .+...+++++|.+++.++++.+..+.+.+|.
T Consensus 242 ~~~g~~g~pdgia~d~-~G~l~va~~~~~~V~~~d~~~G~~-~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~~~~~f~ 318 (343)
T 2qe8_A 242 ERYSEKPICDGISIDK-DHNIYVGDLAHSAIGVITSADRAY-KLLVTDEKLSWTDSFNFGSDGYLYFDCNQLHHSAPLN 318 (343)
T ss_dssp EEEEECCSCSCEEECT-TCCEEEEEGGGTEEEEEETTTTEE-EEEEECGGGSCEEEEEECTTSCEEEEECCGGGSGGGB
T ss_pred EecccCCCCceEEECC-CCCEEEEccCCCeEEEEECCCCCE-EEEEECCceecCCeeEECCCCcEEEEeCccccccccc
Confidence 1112344567899998 688999988899999999844432 22222 2245689999999998888877655554443
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.48 E-value=7.5e-11 Score=124.96 Aligned_cols=222 Identities=9% Similarity=-0.024 Sum_probs=151.0
Q ss_pred CEEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEe
Q 005096 188 AIRSMVWSHNDN-WMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSL 266 (715)
Q Consensus 188 ~V~~l~~spdg~-~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l 266 (715)
...+.+|++++. ++++...++.|.+||.++++.... . ....+.+++|+++++++++. .+ .|.+||.++++.....
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~-~-~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~ 125 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKTVH-A-LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHA 125 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEE-E-CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEE
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEEE-E-CCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEe
Confidence 456788999755 556666788999999988765432 2 34679999999998876654 44 4999999877654332
Q ss_pred cc----cCCceEEEEEcCCCCEEEEEeC------CCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEE-CCCe
Q 005096 267 TG----HGWDVKSVDWHPTKSLLVSGGK------DSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTAS-KDQI 335 (715)
Q Consensus 267 ~~----~~~~I~si~~spdg~~L~sgs~------Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs-~dg~ 335 (715)
.. ....+.+++++++|+++++... .+.|..+| +++. ..+.........++|++|+++|+++. .++.
T Consensus 126 ~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~-~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~ 202 (326)
T 2ghs_A 126 ELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKV-TKLFADISIPNSICFSPDGTTGYFVDTKVNR 202 (326)
T ss_dssp CSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEE-EEEEEEESSEEEEEECTTSCEEEEEETTTCE
T ss_pred eCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcE-EEeeCCCcccCCeEEcCCCCEEEEEECCCCE
Confidence 21 1246889999999997665542 24566666 4443 33322334578999999999776654 5689
Q ss_pred EEEEECC--CC-e-----EEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEc
Q 005096 336 IKLYDIR--AM-K-----ELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWH 407 (715)
Q Consensus 336 I~iwDl~--t~-~-----~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s 407 (715)
|.+||+. ++ + .+..+.........+++++ +++++++...++.|.+||.+ +. ....+..+...+++++|+
T Consensus 203 I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~-~G~lwva~~~~~~v~~~d~~-g~-~~~~i~~~~~~~~~~af~ 279 (326)
T 2ghs_A 203 LMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDA-EGHIWNARWGEGAVDRYDTD-GN-HIARYEVPGKQTTCPAFI 279 (326)
T ss_dssp EEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECT-TSCEEEEEETTTEEEEECTT-CC-EEEEEECSCSBEEEEEEE
T ss_pred EEEEEcccccCCcccCceEEEECCCCCCCCCeeEECC-CCCEEEEEeCCCEEEEECCC-CC-EEEEEECCCCCcEEEEEe
Confidence 9999986 55 3 2223333345678899988 67777777777899999883 33 333344455679999998
Q ss_pred -CCCCEEEEEECC
Q 005096 408 -PIGYLLCSGSND 419 (715)
Q Consensus 408 -pdg~~L~sgs~D 419 (715)
+++..|++++..
T Consensus 280 g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 280 GPDASRLLVTSAR 292 (326)
T ss_dssp STTSCEEEEEEBC
T ss_pred cCCCCEEEEEecC
Confidence 787766655543
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=99.48 E-value=3e-11 Score=130.23 Aligned_cols=263 Identities=8% Similarity=-0.014 Sum_probs=178.9
Q ss_pred CCEEEEEeCCCeEEEEeCCCCceEEEEeccC---------CCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeecC
Q 005096 156 GRRLITGSQSGEFTLWNGQSFNFEMILQAHD---------HAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSA 226 (715)
Q Consensus 156 g~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~---------~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~~ 226 (715)
+..|++++.++.|+.||.++++.+..+.... ..+.+.. .-++..|++++.++.|..+|.++++.+.....
T Consensus 53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~ 131 (376)
T 3q7m_A 53 DNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGV-TVSGGHVYIGSEKAQVYALNTSDGTVAWQTKV 131 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEE-EEETTEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred CCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCc-eEeCCEEEEEcCCCEEEEEECCCCCEEEEEeC
Confidence 5678888889999999999998877665432 2232222 22456788888999999999999988766654
Q ss_pred CCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCce-----EEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 005096 227 HKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDV-----KSVDWHPTKSLLVSGGKDSLVKLWDAKS 301 (715)
Q Consensus 227 h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I-----~si~~spdg~~L~sgs~Dg~I~iwDl~s 301 (715)
.........+. +..+++++.++.|..+|.++++.+..+....... ...... +..+++++.++.|..+|.++
T Consensus 132 ~~~~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~d~~t 207 (376)
T 3q7m_A 132 AGEALSRPVVS--DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSAVLMEQ 207 (376)
T ss_dssp SSCCCSCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEEEETTT
T ss_pred CCceEcCCEEE--CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEEEECCC
Confidence 43322222232 4578888899999999999998877765432211 222232 45788888899999999999
Q ss_pred CceeEEeccCCCc----eE---EEEEcC--CCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEE
Q 005096 302 GRELCSFHGHKNM----VL---CVKWNQ--NGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVS 372 (715)
Q Consensus 302 ~~~~~~~~~~~~~----I~---sl~~sp--dg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~s 372 (715)
++.+..+...... +. .+...+ .+..|++++.++.|..+|.++++.+..... .....+.. .+..|++
T Consensus 208 G~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~--~~~~~~~~---~~~~l~~ 282 (376)
T 3q7m_A 208 GQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKREL--GSVNDFIV---DGNRIYL 282 (376)
T ss_dssp CCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECC--CCEEEEEE---ETTEEEE
T ss_pred CcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccC--CCCCCceE---ECCEEEE
Confidence 9988776532110 00 011111 356788888899999999999998877653 33445544 3567777
Q ss_pred EeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCCC
Q 005096 373 GSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRP 430 (715)
Q Consensus 373 gs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~ 430 (715)
++.++.|..+|..+++............+...... +..|++++.+|.|.+||.+..
T Consensus 283 ~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~--~~~l~v~~~~g~l~~~d~~tG 338 (376)
T 3q7m_A 283 VDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVLY--NGNLVVGDSEGYLHWINVEDG 338 (376)
T ss_dssp EETTCCEEEEETTTCCEEEEECTTTTSCCCCCEEE--TTEEEEECTTSEEEEEETTTC
T ss_pred EcCCCeEEEEECCCCcEEEeecccCCCcccCCEEE--CCEEEEEeCCCeEEEEECCCC
Confidence 88899999999998887665542222233333333 567888999999999998653
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.47 E-value=8.9e-12 Score=130.57 Aligned_cols=224 Identities=9% Similarity=0.023 Sum_probs=156.5
Q ss_pred CCccEEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcee
Q 005096 143 NRCSINRVLWTPTGR-RLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVK 221 (715)
Q Consensus 143 H~~~I~~l~~spdg~-~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~ 221 (715)
........+|+++++ ++++...++.|..|+. +++ ...+..+...+..++++++++++++...++.|.+|+.+ ++..
T Consensus 43 ~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~ 119 (305)
T 3dr2_A 43 QATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAH 119 (305)
T ss_dssp CCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE
T ss_pred CCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEE
Confidence 445677899999998 5566677899999998 444 45555667789999999999977766666889999986 4433
Q ss_pred eeecC----CCCCeEEEEEecCCCEEEE----EEC-------------CCcEEEEECCCCeeEEEecccCCceEEEEEcC
Q 005096 222 ANKSA----HKESVRDLSFCRTDLKFCS----CSD-------------DTTVKVWDFARCQEERSLTGHGWDVKSVDWHP 280 (715)
Q Consensus 222 ~~~~~----h~~~I~~l~~spd~~~Las----~s~-------------Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~sp 280 (715)
..... ....+.++++.++++++++ +.. .+.|+.||..+++..... .......++|++
T Consensus 120 ~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p~gl~~sp 197 (305)
T 3dr2_A 120 LLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHPNGLAFSP 197 (305)
T ss_dssp EEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSEEEEEECT
T ss_pred EEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCCcceEEcC
Confidence 22211 1235678999999998876 321 246777887666544333 334568899999
Q ss_pred CCCEEEEEeCC------CcEEEEECCCCceeE---Ee-ccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEe
Q 005096 281 TKSLLVSGGKD------SLVKLWDAKSGRELC---SF-HGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESF 350 (715)
Q Consensus 281 dg~~L~sgs~D------g~I~iwDl~s~~~~~---~~-~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~ 350 (715)
|++.|+++..+ +.|++||+..+. +. .+ .........++++++|++ .+++.+ .|.+||. +++.+..+
T Consensus 198 dg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~~~~~~~~~pdgi~~d~~G~l-wv~~~~-gv~~~~~-~g~~~~~~ 273 (305)
T 3dr2_A 198 DEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRHFASVPDGLPDGFCVDRGGWL-WSSSGT-GVCVFDS-DGQLLGHI 273 (305)
T ss_dssp TSSEEEEEECCC---CCCEEEEEEEETTE-EEEEEEEECCSSSCCCSEEECTTSCE-EECCSS-EEEEECT-TSCEEEEE
T ss_pred CCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeEEEECCCCCCCeEEECCCCCE-EEecCC-cEEEECC-CCCEEEEE
Confidence 99988877665 689999987554 21 11 112344567899999994 444444 5999998 57777777
Q ss_pred ecCCCCeEEEEEccCCCCEEEEEeCCC
Q 005096 351 RGHRKDVTALAWHPFHEEYFVSGSLDG 377 (715)
Q Consensus 351 ~~h~~~V~~l~~sp~~~~~l~sgs~DG 377 (715)
.... .+.+++|++ +++.|+.++.++
T Consensus 274 ~~~~-~~~~~~f~~-d~~~L~it~~~~ 298 (305)
T 3dr2_A 274 PTPG-TASNCTFDQ-AQQRLFITGGPC 298 (305)
T ss_dssp ECSS-CCCEEEECT-TSCEEEEEETTE
T ss_pred ECCC-ceeEEEEeC-CCCEEEEEcCCe
Confidence 7555 589999996 666666666554
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=99.44 E-value=7.4e-11 Score=127.10 Aligned_cols=257 Identities=13% Similarity=0.019 Sum_probs=176.3
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeecCCCCCe---
Q 005096 155 TGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESV--- 231 (715)
Q Consensus 155 dg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I--- 231 (715)
++..|++++.++.|+.+|.++++.+................ +..+++++.++.|..+|..+++.+..........
T Consensus 102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~ 179 (376)
T 3q7m_A 102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVS--DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLR 179 (376)
T ss_dssp ETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----C
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEEE--CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeec
Confidence 45578889999999999999999887766543322222222 4578888899999999999998777664432211
Q ss_pred --EEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCc----------e-EEEEEcCCCCEEEEEeCCCcEEEEE
Q 005096 232 --RDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWD----------V-KSVDWHPTKSLLVSGGKDSLVKLWD 298 (715)
Q Consensus 232 --~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~----------I-~si~~spdg~~L~sgs~Dg~I~iwD 298 (715)
....+. +..+++++.++.|..+|..+++.+......... + ....+ .+..+++++.++.|..+|
T Consensus 180 ~~~~~~~~--~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~v~~~~~~g~l~~~d 255 (376)
T 3q7m_A 180 GESAPTTA--FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVV--VNGVVFALAYNGNLTALD 255 (376)
T ss_dssp CCCCCEEE--TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEE--ETTEEEEECTTSCEEEEE
T ss_pred CCCCcEEE--CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEE--ECCEEEEEecCcEEEEEE
Confidence 122222 456888888999999999998887665432110 1 11111 256788888899999999
Q ss_pred CCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeec-CCCCeEEEEEccCCCCEEEEEeCCC
Q 005096 299 AKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRG-HRKDVTALAWHPFHEEYFVSGSLDG 377 (715)
Q Consensus 299 l~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~-h~~~V~~l~~sp~~~~~l~sgs~DG 377 (715)
.++++.+..... ....++.. ++..|++++.++.|..+|.++++.+..... ....+..... .+..|++++.+|
T Consensus 256 ~~tG~~~w~~~~--~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~---~~~~l~v~~~~g 328 (376)
T 3q7m_A 256 LRSGQIMWKREL--GSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL---YNGNLVVGDSEG 328 (376)
T ss_dssp TTTCCEEEEECC--CCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEE---ETTEEEEECTTS
T ss_pred CCCCcEEeeccC--CCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEE---ECCEEEEEeCCC
Confidence 999998877652 23444544 366788888999999999999998887763 2233333343 246788888999
Q ss_pred cEEEEEcCCCCceEEEeeccCCCEE-EEEEcCCCCEEEEEECCCeEEEEec
Q 005096 378 SIFHWLVGHETPQVEIHNVHDNTVW-DLAWHPIGYLLCSGSNDHTTKFWCR 427 (715)
Q Consensus 378 ~I~iwd~~~~~~~~~~~~~h~~~V~-~l~~spdg~~L~sgs~Dg~I~iWdl 427 (715)
.|+++|.++++.+.+.... ...+. ..... +..|++++.||.|+.|+.
T Consensus 329 ~l~~~d~~tG~~~~~~~~~-~~~~~~~~~~~--~~~l~v~~~~G~l~~~~~ 376 (376)
T 3q7m_A 329 YLHWINVEDGRFVAQQKVD-SSGFQTEPVAA--DGKLLIQAKDGTVYSITR 376 (376)
T ss_dssp EEEEEETTTCCEEEEEECC-TTCBCSCCEEE--TTEEEEEBTTSCEEEEEC
T ss_pred eEEEEECCCCcEEEEEecC-CCcceeCCEEE--CCEEEEEeCCCEEEEEeC
Confidence 9999999888766555432 22222 22222 457888999999999873
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.43 E-value=3.8e-11 Score=125.76 Aligned_cols=234 Identities=7% Similarity=-0.074 Sum_probs=157.2
Q ss_pred EEEEeccCCCEEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEEC
Q 005096 179 EMILQAHDHAIRSMVWSHNDN-WMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDF 257 (715)
Q Consensus 179 ~~~l~~h~~~V~~l~~spdg~-~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl 257 (715)
+..+..........+|+++++ ++++...++.|..|+.. ++. ..+......+..++++++++++++...++.|.+||.
T Consensus 37 ~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~~-~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~ 114 (305)
T 3dr2_A 37 LLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GTV-DVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDA 114 (305)
T ss_dssp CEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SCE-EEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECT
T ss_pred eEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CCE-EEEeCCCCccceeeECCCCCEEEEECCCCEEEEECC
Confidence 333444456678899999998 55677778999999884 443 344455677899999999996666556688999998
Q ss_pred CCCeeEEEecc----cCCceEEEEEcCCCCEEEE----EeC-------------CCcEEEEECCCCceeEEeccCCCceE
Q 005096 258 ARCQEERSLTG----HGWDVKSVDWHPTKSLLVS----GGK-------------DSLVKLWDAKSGRELCSFHGHKNMVL 316 (715)
Q Consensus 258 ~~~~~~~~l~~----~~~~I~si~~spdg~~L~s----gs~-------------Dg~I~iwDl~s~~~~~~~~~~~~~I~ 316 (715)
+ ++....... ....+.+++++++|+++++ +.. .+.|+.||.++++..... ......
T Consensus 115 ~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p~ 191 (305)
T 3dr2_A 115 D-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHPN 191 (305)
T ss_dssp T-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSEE
T ss_pred C-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCCc
Confidence 6 443322211 1234678999999998776 321 256888888766654433 344578
Q ss_pred EEEEcCCCCEEEEEECC------CeEEEEECCCCeE--EEEe-ecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCC
Q 005096 317 CVKWNQNGNWVLTASKD------QIIKLYDIRAMKE--LESF-RGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHE 387 (715)
Q Consensus 317 sl~~spdg~~Lasgs~d------g~I~iwDl~t~~~--~~~~-~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~ 387 (715)
.++|++|+++|+++... +.|++||+..... ...+ .........+++++ +++++++. .+ .|.+|+.+ +
T Consensus 192 gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~-~G~lwv~~-~~-gv~~~~~~-g 267 (305)
T 3dr2_A 192 GLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDR-GGWLWSSS-GT-GVCVFDSD-G 267 (305)
T ss_dssp EEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECT-TSCEEECC-SS-EEEEECTT-S
T ss_pred ceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECC-CCCEEEec-CC-cEEEECCC-C
Confidence 89999999988887765 7899999876541 1111 11234456788888 66655443 44 48889874 3
Q ss_pred CceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEE
Q 005096 388 TPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTK 423 (715)
Q Consensus 388 ~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~ 423 (715)
+.. ..+.... .+.+++|+++++.|+.++.++..+
T Consensus 268 ~~~-~~~~~~~-~~~~~~f~~d~~~L~it~~~~l~~ 301 (305)
T 3dr2_A 268 QLL-GHIPTPG-TASNCTFDQAQQRLFITGGPCLWM 301 (305)
T ss_dssp CEE-EEEECSS-CCCEEEECTTSCEEEEEETTEEEE
T ss_pred CEE-EEEECCC-ceeEEEEeCCCCEEEEEcCCeEEE
Confidence 333 3333333 588999998888888888765433
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.43 E-value=1.7e-11 Score=143.07 Aligned_cols=270 Identities=10% Similarity=0.022 Sum_probs=189.0
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCceEEEEecc-C----CCEEE-EEEcCCCCEEEEEeC------CCcEEEEeCCCCceee
Q 005096 155 TGRRLITGSQSGEFTLWNGQSFNFEMILQAH-D----HAIRS-MVWSHNDNWMVSGDD------GGAIKYWQNNMNNVKA 222 (715)
Q Consensus 155 dg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h-~----~~V~~-l~~spdg~~L~tgs~------dg~I~iwd~~~~~~~~ 222 (715)
++..|++++.|+.|+.+|.++++.+..+... . ..+.+ ... .+..+++++. ++.|+.||.++++++.
T Consensus 127 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W 204 (677)
T 1kb0_A 127 WKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRV--FKGKVIIGNGGAEYGVRGYITAYDAETGERKW 204 (677)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEE
T ss_pred ECCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEE--ECCEEEEEecccccCCCCEEEEEECCCCcEEE
Confidence 4568899999999999999999998888765 2 11211 111 2345555543 6899999999998877
Q ss_pred eecCCCCC--------------------------------eEEEEEecCCCEEEEEECCC-------------------c
Q 005096 223 NKSAHKES--------------------------------VRDLSFCRTDLKFCSCSDDT-------------------T 251 (715)
Q Consensus 223 ~~~~h~~~--------------------------------I~~l~~spd~~~Las~s~Dg-------------------~ 251 (715)
.+...... ...+++++++..|++++.++ .
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~s 284 (677)
T 1kb0_A 205 RWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLAS 284 (677)
T ss_dssp EEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTE
T ss_pred EeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEE
Confidence 66432211 13577888888988887664 5
Q ss_pred EEEEECCCCeeEEEecccC---------CceEEEEEcCCC---CEEEEEeCCCcEEEEECCCCceeEEeccCC-------
Q 005096 252 VKVWDFARCQEERSLTGHG---------WDVKSVDWHPTK---SLLVSGGKDSLVKLWDAKSGRELCSFHGHK------- 312 (715)
Q Consensus 252 V~iwdl~~~~~~~~l~~~~---------~~I~si~~spdg---~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~------- 312 (715)
|..+|.++++.+..+.... .....+....+| +.|++++.+|.|+++|.++++.+..+....
T Consensus 285 v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~ 364 (677)
T 1kb0_A 285 IVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGY 364 (677)
T ss_dssp EEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEE
T ss_pred EEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCccccc
Confidence 9999999999887765321 112223333366 688999999999999999999887664211
Q ss_pred ----Cce------------------------EEEEEcCCCCEEEEEECC-------------------------------
Q 005096 313 ----NMV------------------------LCVKWNQNGNWVLTASKD------------------------------- 333 (715)
Q Consensus 313 ----~~I------------------------~sl~~spdg~~Lasgs~d------------------------------- 333 (715)
..+ ..++|+++..+|++...+
T Consensus 365 d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~ 444 (677)
T 1kb0_A 365 DKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAK 444 (677)
T ss_dssp CTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCE
T ss_pred CCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccccccccccccccccccccccccc
Confidence 011 146788888888876432
Q ss_pred ------------CeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCE
Q 005096 334 ------------QIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTV 401 (715)
Q Consensus 334 ------------g~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V 401 (715)
+.|..||+++++.+.++... ..+....+.. .+.++++++.||.|++||.++++.+..+...+....
T Consensus 445 ~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~-~~~~~g~~~~-~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~ 522 (677)
T 1kb0_A 445 FFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHV-SPWNGGTLTT-AGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVA 522 (677)
T ss_dssp EECSSCCCSCCEEEEEEEETTTTEEEEEEEES-SSCCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCS
T ss_pred ccccccCCCCCccEEEEEeCCCCcEEeecCCC-CCCcCcceEe-CCCEEEEECCCCcEEEEECCCCceeeeeeCCCCccc
Confidence 78999999999999888743 3333444444 567788889999999999999998888776554444
Q ss_pred EEEEEcCCCCEEEEE-EC----------------CCeEEEEecC
Q 005096 402 WDLAWHPIGYLLCSG-SN----------------DHTTKFWCRN 428 (715)
Q Consensus 402 ~~l~~spdg~~L~sg-s~----------------Dg~I~iWdl~ 428 (715)
.-+.|..+|+.+++. +. .+.+.+|.+.
T Consensus 523 ~p~~y~~~G~~~v~~~~G~~~~~~~~~~~~~~~~~~~l~~f~l~ 566 (677)
T 1kb0_A 523 APSTYMVDGRQYVSVAVGWGGVYGLAARATERQGPGTVYTFVVG 566 (677)
T ss_dssp CCEEEEETTEEEEEEEECCCHHHHHHCCSCSCCCCCEEEEEEET
T ss_pred CCEEEEeCCEEEEEEeccCCccccccccccccCCCCeEEEEecc
Confidence 556666777644443 32 3678888886
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.42 E-value=2.6e-12 Score=138.81 Aligned_cols=172 Identities=10% Similarity=0.029 Sum_probs=135.6
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc---------eee-eecCCCCCeEEEEEecCCCEEEEEECCCcEEEEEC
Q 005096 188 AIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNN---------VKA-NKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDF 257 (715)
Q Consensus 188 ~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~---------~~~-~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl 257 (715)
.++.+++++...+|++|+.++ +.||+++... ... ....+.. |..|+| |+++|+++ .++.|++||+
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv 113 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLDL 113 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEES
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEc
Confidence 688999999999999999875 5569854332 111 1223455 999999 88999998 8899999999
Q ss_pred CCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEE
Q 005096 258 ARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIK 337 (715)
Q Consensus 258 ~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~ 337 (715)
.+......+..+...+.++.+.+. .+++++.||.|.+||++++.... +...|+|++||++| +++|..||.|+
T Consensus 114 ~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~~vg~~dg~i~ 185 (388)
T 1xip_A 114 EELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--LAVLLKDRSFQ 185 (388)
T ss_dssp SSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE--EEEEETTSCEE
T ss_pred hhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc--eEEEEcCCcEE
Confidence 877666666667778888887754 38889999999999999877643 34579999999999 78899999999
Q ss_pred EEECCCCeE--EEEe------e---cCCCCeEEEEEccCCCCEEEEE
Q 005096 338 LYDIRAMKE--LESF------R---GHRKDVTALAWHPFHEEYFVSG 373 (715)
Q Consensus 338 iwDl~t~~~--~~~~------~---~h~~~V~~l~~sp~~~~~l~sg 373 (715)
+|+....+. ..++ . .|...|.+|.|.+ ++.++++-
T Consensus 186 ~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~-~~~flv~y 231 (388)
T 1xip_A 186 SFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILS-PQDFLAVF 231 (388)
T ss_dssp EEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESS-SSEEEEEE
T ss_pred EEcCCCccccccceecCCcccccccCCCeeEEEEEEec-CCeEEEEE
Confidence 999988775 5556 2 3678899999998 67777654
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.9e-11 Score=133.82 Aligned_cols=239 Identities=6% Similarity=-0.002 Sum_probs=171.5
Q ss_pred EEEEcCCCCEEEEEe----------CCCeEEEEeCCCCceEEEEecc-------CCCEEEEEEcCCCCEEEEEeC--CCc
Q 005096 149 RVLWTPTGRRLITGS----------QSGEFTLWNGQSFNFEMILQAH-------DHAIRSMVWSHNDNWMVSGDD--GGA 209 (715)
Q Consensus 149 ~l~~spdg~~Latgs----------~dg~I~Iwd~~~~~~~~~l~~h-------~~~V~~l~~spdg~~L~tgs~--dg~ 209 (715)
.+++++|+++|+++. .++.|.++|..+++.+..+..- ......++|++|+++|+++.. ++.
T Consensus 122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~ 201 (426)
T 3c75_H 122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPA 201 (426)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCE
T ss_pred ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCe
Confidence 799999999998886 3678999999999998887532 123457899999999998874 578
Q ss_pred EEEEeCCCCceeeeecCCCCCeEEEEEecC-CCEEEEEECCCcEEEEECCCCeeEEE----ecccCCc-eEEEEEcCCCC
Q 005096 210 IKYWQNNMNNVKANKSAHKESVRDLSFCRT-DLKFCSCSDDTTVKVWDFARCQEERS----LTGHGWD-VKSVDWHPTKS 283 (715)
Q Consensus 210 I~iwd~~~~~~~~~~~~h~~~I~~l~~spd-~~~Las~s~Dg~V~iwdl~~~~~~~~----l~~~~~~-I~si~~spdg~ 283 (715)
|.++|+.+.+++..+..... ....++ ...+++.+.||++.+.++.+++.... +...... ...+.|.+++.
T Consensus 202 VsVID~~t~kvv~~I~v~g~----~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~ 277 (426)
T 3c75_H 202 VGVVDLEGKTFDRMLDVPDC----YHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSG 277 (426)
T ss_dssp EEEEETTTTEEEEEEECCSE----EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTC
T ss_pred EEEEECCCCeEEEEEEcCCc----eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCC
Confidence 99999999998877654221 223333 35667778888888888865554422 1111111 12457788988
Q ss_pred EEEEEeCCCcEEEEECCCCcee--EEecc----------CCCceEEEEEcCCCCEEEEEEC----------CCeEEEEEC
Q 005096 284 LLVSGGKDSLVKLWDAKSGREL--CSFHG----------HKNMVLCVKWNQNGNWVLTASK----------DQIIKLYDI 341 (715)
Q Consensus 284 ~L~sgs~Dg~I~iwDl~s~~~~--~~~~~----------~~~~I~sl~~spdg~~Lasgs~----------dg~I~iwDl 341 (715)
.++..+.++.|.+.|+.+.... ..+.. .......+++++++++|++... ++.|.++|+
T Consensus 278 ~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~ 357 (426)
T 3c75_H 278 RLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNA 357 (426)
T ss_dssp EEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEET
T ss_pred EEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEEC
Confidence 8888888899999998754421 11110 0011223689999988887653 357999999
Q ss_pred CCCeEEEEeecCCCCeEEEEEccCCCC-EEEEEe-CCCcEEEEEcCCCCceEEE
Q 005096 342 RAMKELESFRGHRKDVTALAWHPFHEE-YFVSGS-LDGSIFHWLVGHETPQVEI 393 (715)
Q Consensus 342 ~t~~~~~~~~~h~~~V~~l~~sp~~~~-~l~sgs-~DG~I~iwd~~~~~~~~~~ 393 (715)
.+.+.+.++... .....|+|++ +++ ++++.. .++.|.|+|..+.+.+..+
T Consensus 358 ~T~kvv~~I~vg-~~P~gia~sp-Dg~~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 358 ETGERINKIELG-HEIDSINVSQ-DAEPLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp TTCCEEEEEEEE-EEECEEEECC-SSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred CCCeEEEEEECC-CCcCeEEEcc-CCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 999999988643 2588999999 555 777776 5899999999988876665
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.8e-11 Score=143.19 Aligned_cols=271 Identities=11% Similarity=0.095 Sum_probs=182.5
Q ss_pred CCEEEEEeCCCeEEEEeCCCCceEEEEeccCCC----------E-EEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeee
Q 005096 156 GRRLITGSQSGEFTLWNGQSFNFEMILQAHDHA----------I-RSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANK 224 (715)
Q Consensus 156 g~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~----------V-~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~ 224 (715)
+..|++++.++.|+.+|.++++.+-.+...... + ..+++ ++..|++++.|+.|..+|.++++++..+
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~~~W~~ 147 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQRAWSV 147 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCCEeeee
Confidence 557888888999999999999998887643221 0 11222 3568888999999999999999887766
Q ss_pred cCC--C---CCeEEEEEecCCCEEEEEE------CCCcEEEEECCCCeeEEEecccC-----------------------
Q 005096 225 SAH--K---ESVRDLSFCRTDLKFCSCS------DDTTVKVWDFARCQEERSLTGHG----------------------- 270 (715)
Q Consensus 225 ~~h--~---~~I~~l~~spd~~~Las~s------~Dg~V~iwdl~~~~~~~~l~~~~----------------------- 270 (715)
... . ..+.+.-...++ .+++++ .++.|+.||.++++.+-.+....
T Consensus 148 ~~~~~~~~~~~~~~sP~v~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~ 226 (689)
T 1yiq_A 148 DTRADHKRSYTITGAPRVVNG-KVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDA 226 (689)
T ss_dssp ECCSCTTSCCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSST
T ss_pred cCcCCCCCCccccCCcEEECC-EEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCce
Confidence 442 1 111111111144 444443 36899999999999887664210
Q ss_pred --------CceEEEEEcCCCCEEEEEeCCCc-------------------EEEEECCCCceeEEecc--CC-------Cc
Q 005096 271 --------WDVKSVDWHPTKSLLVSGGKDSL-------------------VKLWDAKSGRELCSFHG--HK-------NM 314 (715)
Q Consensus 271 --------~~I~si~~spdg~~L~sgs~Dg~-------------------I~iwDl~s~~~~~~~~~--~~-------~~ 314 (715)
.....++++++.++|++++.++. |..||.++++.+..+.. +. ..
T Consensus 227 w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~ 306 (689)
T 1yiq_A 227 YVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQH 306 (689)
T ss_dssp HHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSC
T ss_pred eeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCC
Confidence 01125788888899999887763 99999999999988753 21 11
Q ss_pred eEEEEEcCCCC---EEEEEECCCeEEEEECCCCeEEEEeecCCC------------------------------------
Q 005096 315 VLCVKWNQNGN---WVLTASKDQIIKLYDIRAMKELESFRGHRK------------------------------------ 355 (715)
Q Consensus 315 I~sl~~spdg~---~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~------------------------------------ 355 (715)
+....+..+|+ .|++++.+|.|+++|.++++.+........
T Consensus 307 ~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~ 386 (689)
T 1yiq_A 307 MILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFW 386 (689)
T ss_dssp EEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTT
T ss_pred cEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcc
Confidence 22222223564 788999999999999999998854432110
Q ss_pred ---CeEEEEEccCCCCEEEEEeC---------------------------------------------CCcEEEEEcCCC
Q 005096 356 ---DVTALAWHPFHEEYFVSGSL---------------------------------------------DGSIFHWLVGHE 387 (715)
Q Consensus 356 ---~V~~l~~sp~~~~~l~sgs~---------------------------------------------DG~I~iwd~~~~ 387 (715)
.-..+++++ +..+|++... +|.|+.||+.++
T Consensus 387 Gg~~w~~~a~dp-~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG 465 (689)
T 1yiq_A 387 GAHDWQPMSYNP-DTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQ 465 (689)
T ss_dssp CSSCSSCCEEET-TTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTT
T ss_pred cccCCCcceECC-CCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCC
Confidence 011267787 4455554421 377999999999
Q ss_pred CceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCCCCC
Q 005096 388 TPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGD 432 (715)
Q Consensus 388 ~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~~ 432 (715)
+.+.++.. ...+....+...+.+|++++.||.|+.||.++.+.
T Consensus 466 ~~~W~~~~--~~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~ 508 (689)
T 1yiq_A 466 QAAWEVPY--VTIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEK 508 (689)
T ss_dssp EEEEEEEE--SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred CeEeEccC--CCCccCccceECCCEEEEECCCCcEEEEECCCCcc
Confidence 87777654 22333445566788999999999999999976443
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.40 E-value=1.5e-11 Score=143.62 Aligned_cols=271 Identities=8% Similarity=0.049 Sum_probs=187.9
Q ss_pred CCEEEEEeCCCeEEEEeCCCCceEEEEeccCC-----------CEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeee
Q 005096 156 GRRLITGSQSGEFTLWNGQSFNFEMILQAHDH-----------AIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANK 224 (715)
Q Consensus 156 g~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~-----------~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~ 224 (715)
+..|++++.++.|+.+|.++++.+-.+..... ....+++ ++..|++++.|+.|..+|..+++.+..+
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~~~W~~ 154 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATGKEVWHQ 154 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCCCEEeee
Confidence 45788888889999999999998887764421 0122333 4678888899999999999999988777
Q ss_pred cCC-C----CCeEEEEEecCCCEEEEEEC------CCcEEEEECCCCeeEEEecccCCc---------------------
Q 005096 225 SAH-K----ESVRDLSFCRTDLKFCSCSD------DTTVKVWDFARCQEERSLTGHGWD--------------------- 272 (715)
Q Consensus 225 ~~h-~----~~I~~l~~spd~~~Las~s~------Dg~V~iwdl~~~~~~~~l~~~~~~--------------------- 272 (715)
... . ..+.+--.. .+..+++++. ++.|+.||.++++.+..+......
T Consensus 155 ~~~~~~~~~~~~~~~p~v-~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g 233 (677)
T 1kb0_A 155 NTFEGQKGSLTITGAPRV-FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSG 233 (677)
T ss_dssp ETTTTCCSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGG
T ss_pred cCCcCcCcCcccccCcEE-ECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccC
Confidence 654 1 112211111 2345555543 689999999999988766532211
Q ss_pred -----------eEEEEEcCCCCEEEEEeCCC-------------------cEEEEECCCCceeEEecc--CC-------C
Q 005096 273 -----------VKSVDWHPTKSLLVSGGKDS-------------------LVKLWDAKSGRELCSFHG--HK-------N 313 (715)
Q Consensus 273 -----------I~si~~spdg~~L~sgs~Dg-------------------~I~iwDl~s~~~~~~~~~--~~-------~ 313 (715)
...+++++++++|++++.++ .|..+|.++++.+..+.. +. .
T Consensus 234 ~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~ 313 (677)
T 1kb0_A 234 KWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQ 313 (677)
T ss_dssp CHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCS
T ss_pred ceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCC
Confidence 13578888899888887664 499999999999887753 21 1
Q ss_pred ceEEEEEcCCC---CEEEEEECCCeEEEEECCCCeEEEEeecCCCC-----------e----------------------
Q 005096 314 MVLCVKWNQNG---NWVLTASKDQIIKLYDIRAMKELESFRGHRKD-----------V---------------------- 357 (715)
Q Consensus 314 ~I~sl~~spdg---~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~-----------V---------------------- 357 (715)
....+....+| +.|++++.+|.|+++|.++++.+..+...... +
T Consensus 314 ~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~ 393 (677)
T 1kb0_A 314 PMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAH 393 (677)
T ss_dssp CCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSS
T ss_pred CcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCccccc
Confidence 12223333467 68899999999999999999998776532110 1
Q ss_pred --EEEEEccCCCCEEEEEeC-------------------------------------------CCcEEEEEcCCCCceEE
Q 005096 358 --TALAWHPFHEEYFVSGSL-------------------------------------------DGSIFHWLVGHETPQVE 392 (715)
Q Consensus 358 --~~l~~sp~~~~~l~sgs~-------------------------------------------DG~I~iwd~~~~~~~~~ 392 (715)
..+++++ +..++++... .|.|..||+.+++.+.+
T Consensus 394 ~w~~~a~dp-~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~ 472 (677)
T 1kb0_A 394 NWHPMSFNP-QTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWS 472 (677)
T ss_dssp CSSCCEEET-TTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEE
T ss_pred CCCCceEcC-CCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEee
Confidence 1467888 4555555432 27899999999887776
Q ss_pred EeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCCCCC
Q 005096 393 IHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGD 432 (715)
Q Consensus 393 ~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~~ 432 (715)
+.. ...++...+..++.+|++++.||.|++||....+.
T Consensus 473 ~~~--~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~ 510 (677)
T 1kb0_A 473 VEH--VSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEK 510 (677)
T ss_dssp EEE--SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred cCC--CCCCcCcceEeCCCEEEEECCCCcEEEEECCCCce
Confidence 653 33455555666788899999999999999976443
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.37 E-value=2.6e-11 Score=127.38 Aligned_cols=267 Identities=11% Similarity=0.032 Sum_probs=179.9
Q ss_pred CccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeee
Q 005096 144 RCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKAN 223 (715)
Q Consensus 144 ~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~ 223 (715)
...+.++.+..++. |++++.+ |..+|. +++....+......+....+. +..|++++.++.|..+|.+ ++....
T Consensus 59 ~~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~~~~~~~~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~ 131 (330)
T 3hxj_A 59 EIIECRPSIGKDGT-IYFGSDK--VYAINP-DGTEKWRFDTKKAIVSDFTIF--EDILYVTSMDGHLYAINTD-GTEKWR 131 (330)
T ss_dssp GEEEECCEETTTTE-ECCSSCE--EEEECC-CGGGGGGSCC-----CCEEEE--TTEEEEECTTSEEEEECTT-SCEEEE
T ss_pred CCcccceEEecCCc-EEEecCc--EEEECC-CCcEEEEEECCCCcccCceEE--CCEEEEEecCCEEEEEcCC-CCEEEE
Confidence 34467777777775 5555555 888886 554433333222222333333 5667788888999999988 766666
Q ss_pred ecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 005096 224 KSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGR 303 (715)
Q Consensus 224 ~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~ 303 (715)
.......+.++....++. |++++.++.|..||.. ++.+..+......+.++.+..++.+++ ++ +.|..|| .+++
T Consensus 132 ~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v-~t--~~l~~~d-~~g~ 205 (330)
T 3hxj_A 132 FKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYF-GS--DKVYAIN-PDGT 205 (330)
T ss_dssp EECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEE-ES--SSEEEEC-TTSC
T ss_pred EcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEE-Ee--CEEEEEC-CCCc
Confidence 555555667777766666 6667788999999998 777666665566777888877777444 44 7899999 7777
Q ss_pred eeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEE
Q 005096 304 ELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWL 383 (715)
Q Consensus 304 ~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd 383 (715)
.+..+......+.++.+..++. |.+++.++.|..+|. +++.+..+......+.++.+.. +..|..++.+|.|..+|
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~-~g~~~~~~~~~~~~~~~~~~~~--~g~l~v~t~~ggl~~~d 281 (330)
T 3hxj_A 206 EKWNFYAGYWTVTRPAISEDGT-IYVTSLDGHLYAINP-DGTEKWRFKTGKRIESSPVIGN--TDTIYFGSYDGHLYAIN 281 (330)
T ss_dssp EEEEECCSSCCCSCCEECTTSC-EEEEETTTEEEEECT-TSCEEEEEECSSCCCSCCEECT--TSCEEEECTTCEEEEEC
T ss_pred EEEEEccCCcceeceEECCCCe-EEEEcCCCeEEEECC-CCCEeEEeeCCCCccccceEcC--CCeEEEecCCCCEEEEC
Confidence 7777765666788888887775 566777888888884 5777777665555555566643 44566778888899998
Q ss_pred cCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCCC
Q 005096 384 VGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRP 430 (715)
Q Consensus 384 ~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~ 430 (715)
. ++...... ......+.++....++. |..++.+|.+++...+..
T Consensus 282 ~-~g~~~~~~-~~~~~~~~~~~~d~~g~-l~~gt~~G~~~~~~~~~~ 325 (330)
T 3hxj_A 282 P-DGTEKWNF-ETGSWIIATPVIDENGT-IYFGTRNGKFYALFNLEH 325 (330)
T ss_dssp T-TSCEEEEE-ECSSCCCSCCEECTTCC-EEEECTTSCEEEEEC---
T ss_pred C-CCcEEEEE-EcCCccccceEEcCCCE-EEEEcCCCeEEEEecccc
Confidence 5 44433333 33455677777777776 566889999999877543
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.36 E-value=6.6e-11 Score=138.33 Aligned_cols=257 Identities=9% Similarity=0.013 Sum_probs=175.5
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCceEEEEecc-C-C---CEEE-EEEcCCCCEEEEEe------CCCcEEEEeCCCCceee
Q 005096 155 TGRRLITGSQSGEFTLWNGQSFNFEMILQAH-D-H---AIRS-MVWSHNDNWMVSGD------DGGAIKYWQNNMNNVKA 222 (715)
Q Consensus 155 dg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h-~-~---~V~~-l~~spdg~~L~tgs------~dg~I~iwd~~~~~~~~ 222 (715)
++..|++++.|+.|+.+|.++++.+..+... . . .+.+ ..+. ++ .+++++ .++.|+.||.++++++.
T Consensus 120 ~~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~-~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W 197 (689)
T 1yiq_A 120 WKGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVV-NG-KVVIGNGGAEFGVRGYVTAYDAETGKEAW 197 (689)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEE-TT-EEEECCBCTTTCCBCEEEEEETTTCCEEE
T ss_pred ECCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEE-CC-EEEEEeCCCccCCCCEEEEEECCCCcEEE
Confidence 3567899999999999999999988777642 1 1 1111 1111 34 444443 36899999999998876
Q ss_pred eecCCC-------------------------------CCeEEEEEecCCCEEEEEECCCc-------------------E
Q 005096 223 NKSAHK-------------------------------ESVRDLSFCRTDLKFCSCSDDTT-------------------V 252 (715)
Q Consensus 223 ~~~~h~-------------------------------~~I~~l~~spd~~~Las~s~Dg~-------------------V 252 (715)
.+.... .....+++++++.+|++++.++. |
T Consensus 198 ~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v 277 (689)
T 1yiq_A 198 RFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSI 277 (689)
T ss_dssp EEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEE
T ss_pred EecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeE
Confidence 654210 01125778888889999887764 9
Q ss_pred EEEECCCCeeEEEecccCC---------ceEEEEEcCCCC---EEEEEeCCCcEEEEECCCCceeEEeccCC-Cce----
Q 005096 253 KVWDFARCQEERSLTGHGW---------DVKSVDWHPTKS---LLVSGGKDSLVKLWDAKSGRELCSFHGHK-NMV---- 315 (715)
Q Consensus 253 ~iwdl~~~~~~~~l~~~~~---------~I~si~~spdg~---~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~-~~I---- 315 (715)
..||.++++.+-.+..... .+....+..+++ .|+.++.+|.|+++|.++++.+....... .+.
T Consensus 278 ~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~ 357 (689)
T 1yiq_A 278 VAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMD 357 (689)
T ss_dssp EEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEE
T ss_pred EEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccC
Confidence 9999999998877754211 111222222454 78889999999999999999875432111 000
Q ss_pred ----------------------------------EEEEEcCCCCEEEEEEC-----------------------------
Q 005096 316 ----------------------------------LCVKWNQNGNWVLTASK----------------------------- 332 (715)
Q Consensus 316 ----------------------------------~sl~~spdg~~Lasgs~----------------------------- 332 (715)
..++|+++..+|++...
T Consensus 358 ~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 437 (689)
T 1yiq_A 358 MKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTG 437 (689)
T ss_dssp TTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEEC
T ss_pred ccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCcccc
Confidence 12678888887777532
Q ss_pred ----------------CCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeec
Q 005096 333 ----------------DQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNV 396 (715)
Q Consensus 333 ----------------dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~ 396 (715)
+|.|+.||+++++.+.++..+.... .-.+.. .+.++++++.||.|+.||.++++.+.++...
T Consensus 438 ~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~-~g~~~t-agglvf~gt~dg~l~a~D~~tG~~lw~~~~~ 515 (689)
T 1yiq_A 438 MMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTIFN-GGTLST-AGNLVFEGSADGRVIAYAADTGEKLWEQPAA 515 (689)
T ss_dssp CCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSSCC-CCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred ccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCCcc-CccceE-CCCEEEEECCCCcEEEEECCCCccceeeeCC
Confidence 3779999999999999887654332 223443 5778888999999999999999988887665
Q ss_pred cCCCEEEEEEcCCCCEEEE
Q 005096 397 HDNTVWDLAWHPIGYLLCS 415 (715)
Q Consensus 397 h~~~V~~l~~spdg~~L~s 415 (715)
+.....-+.|..+|+.+++
T Consensus 516 ~~~~~~p~ty~~~G~qyv~ 534 (689)
T 1yiq_A 516 SGVMAAPVTYSVDGEQYVT 534 (689)
T ss_dssp SCCCSCCEEEEETTEEEEE
T ss_pred CCcccCceEEEECCEEEEE
Confidence 4443445667778764433
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=99.35 E-value=1.8e-11 Score=131.71 Aligned_cols=250 Identities=10% Similarity=-0.071 Sum_probs=169.5
Q ss_pred eEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEe----------CCCcEEEEeCCCCceeeeecCC-------CC
Q 005096 167 EFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGD----------DGGAIKYWQNNMNNVKANKSAH-------KE 229 (715)
Q Consensus 167 ~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs----------~dg~I~iwd~~~~~~~~~~~~h-------~~ 229 (715)
+|.++|..+++.+..+..-... .+.+++|+++|+++. .++.|.+||..+.+.+..+... ..
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~ 124 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGP 124 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSC
T ss_pred eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCC
Confidence 7889999999999998876666 799999999998876 3688999999999988887543 13
Q ss_pred CeEEEEEecCCCEEEEEEC--CCcEEE--EECCCCeeEEEecccCCceEEEEEcCCC-CEEEEEeCCCcEEEEECCC---
Q 005096 230 SVRDLSFCRTDLKFCSCSD--DTTVKV--WDFARCQEERSLTGHGWDVKSVDWHPTK-SLLVSGGKDSLVKLWDAKS--- 301 (715)
Q Consensus 230 ~I~~l~~spd~~~Las~s~--Dg~V~i--wdl~~~~~~~~l~~~~~~I~si~~spdg-~~L~sgs~Dg~I~iwDl~s--- 301 (715)
....+++++|+++|+++.. +..|.+ +|+.+ +..+.... . +.+.+++ ..+++.+.|+.+.+.|+++
T Consensus 125 ~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~-~---~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~ 197 (368)
T 1mda_H 125 RVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSAS-C---FHIHPGAAATHYLGSCPASLAASDLAAAPA 197 (368)
T ss_dssp CTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSS-C---CCCEEEETTEEECCCCTTSCEEEECCSSCC
T ss_pred CcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCC-c---eEEccCCCeEEEEEcCCCCEEEEECccccc
Confidence 4568999999999999875 467888 88876 33443211 1 1223444 3555667788888888886
Q ss_pred --CceeEE----eccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCC--eEEEEeecCC----------CCeEEEEEc
Q 005096 302 --GRELCS----FHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAM--KELESFRGHR----------KDVTALAWH 363 (715)
Q Consensus 302 --~~~~~~----~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~--~~~~~~~~h~----------~~V~~l~~s 363 (715)
++.+.. +....... . ++++..++..+. +.|.+.|+.+. +.+..+.... .....++++
T Consensus 198 ~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s 272 (368)
T 1mda_H 198 AAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKL 272 (368)
T ss_dssp CCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEE
T ss_pred cCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEc
Confidence 333211 11112233 3 556666666666 99999999753 2333332111 112226899
Q ss_pred cCCCCEEEEEe-C-------CCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCC-EEEEEE-CCCeEEEEecCCCCC
Q 005096 364 PFHEEYFVSGS-L-------DGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGY-LLCSGS-NDHTTKFWCRNRPGD 432 (715)
Q Consensus 364 p~~~~~l~sgs-~-------DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~-~L~sgs-~Dg~I~iWdl~~~~~ 432 (715)
+++++++++.. . ++.+.++|..+.+.+..+..+. ..++|+|++|++ ++++.. .++.|.++|+...+.
T Consensus 273 ~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~--~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kv 349 (368)
T 1mda_H 273 KNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH--DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQD 349 (368)
T ss_dssp TTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE--EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEE
T ss_pred CCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC--CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcE
Confidence 95455555444 2 2356699999887665555432 688999999987 566666 599999999976443
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.34 E-value=3.6e-13 Score=145.67 Aligned_cols=258 Identities=9% Similarity=-0.006 Sum_probs=145.0
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeecCCCC-CeE-
Q 005096 155 TGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKE-SVR- 232 (715)
Q Consensus 155 dg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~-~I~- 232 (715)
++.+|++++.||.|+.||..+++.+..+.. +.+.+..+..++..+++++.|+.|+.||.++++.+..+..+.. .+.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~ 85 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQA 85 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccccc
Confidence 577899999999999999999999888876 4455555556777888888999999999988877655443221 110
Q ss_pred EEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCC
Q 005096 233 DLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHK 312 (715)
Q Consensus 233 ~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~ 312 (715)
+..+. ++..|++++.|+.|+.||.++++.+..+..+. .+.+++++..|++++.|+.|+.||.++++.+..+....
T Consensus 86 sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~ 160 (369)
T 2hz6_A 86 SPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFD 160 (369)
T ss_dssp CSCC------CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCSSSSSCCCEEEEEE
T ss_pred CceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEEEEEECCCCCEEEeEeccc
Confidence 01111 34567888889999999999998887766443 23455678889999999999999999998876664221
Q ss_pred CceEEEEEcCCC---CEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEE----EEEeCCCcEEEEEcC
Q 005096 313 NMVLCVKWNQNG---NWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYF----VSGSLDGSIFHWLVG 385 (715)
Q Consensus 313 ~~I~sl~~spdg---~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l----~sgs~DG~I~iwd~~ 385 (715)
....+++.+. ..+++++.||.|+.||.++++.+.++......+....++. ++.+. +.+ ++.++++|..
T Consensus 161 --~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~pv~~~~~~~~-dg~~~v~~~~~~--~~~l~~ld~~ 235 (369)
T 2hz6_A 161 --YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNYASPVVAFYVWQR-EGLRKVMHINVA--VETLRYLTFM 235 (369)
T ss_dssp --ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEECSSCEEEEEECTT-SSCEEECCEEEE--HHHHHHHHHH
T ss_pred --ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecCCCceEEEEEecC-CceEeccceeec--ccceeeeehh
Confidence 2233343332 5677888999999999999999888774333233333333 33221 111 3344555543
Q ss_pred CCC----ceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecC
Q 005096 386 HET----PQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRN 428 (715)
Q Consensus 386 ~~~----~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~ 428 (715)
+++ ...+.... +.+... .-.+..|++++.||.|+.++..
T Consensus 236 tG~~~~~~~W~~~~~--~~~~sp--~~~~g~lyv~~~~G~l~al~~~ 278 (369)
T 2hz6_A 236 SGEVGRITKWKYPFP--KETEAK--SKLTPTLYVGKYSTSLYASPSM 278 (369)
T ss_dssp HHHHHHHHTSCCCCC--CHHHHH--HHSEEEECBEECSSCEECCEEE
T ss_pred cCCcccceeeeeccC--cccccc--ccccceEEEecccCCEEecCcc
Confidence 333 22221111 111100 0124578888889999888775
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.29 E-value=1.8e-09 Score=117.15 Aligned_cols=221 Identities=10% Similarity=0.021 Sum_probs=148.7
Q ss_pred CCCCEEEE-EeCCCcEEEEeCCCC----ceeeeec-------CCCCCeEEEEEecCCCEEEEEECC------CcEEEEEC
Q 005096 196 HNDNWMVS-GDDGGAIKYWQNNMN----NVKANKS-------AHKESVRDLSFCRTDLKFCSCSDD------TTVKVWDF 257 (715)
Q Consensus 196 pdg~~L~t-gs~dg~I~iwd~~~~----~~~~~~~-------~h~~~I~~l~~spd~~~Las~s~D------g~V~iwdl 257 (715)
.++++|++ +..++.|.|+|+.+. ++..++. .....-..+.+++++ .++++..+ +.|.++|.
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~ 171 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH 171 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence 67777754 567789999999765 4555442 111234567788999 66666555 78999999
Q ss_pred CCCeeEEEecccCC---ceEEEEEcCCCCEEEEEe-------------------CCCcEEEEECCCCceeEEeccC-C-C
Q 005096 258 ARCQEERSLTGHGW---DVKSVDWHPTKSLLVSGG-------------------KDSLVKLWDAKSGRELCSFHGH-K-N 313 (715)
Q Consensus 258 ~~~~~~~~l~~~~~---~I~si~~spdg~~L~sgs-------------------~Dg~I~iwDl~s~~~~~~~~~~-~-~ 313 (715)
++.+.+..+..... .-..+.|+++++.+++.. .+.+|.+||+.+++.+.++... . .
T Consensus 172 ~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~ 251 (462)
T 2ece_A 172 YSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENR 251 (462)
T ss_dssp TTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEE
T ss_pred CCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCC
Confidence 99999888863322 234688899999888874 3689999999998878777642 1 2
Q ss_pred ceEEEEE--cCCCCEEEEEEC------CCeEEEEECCCCeE--EEEe--ecC----------------CCCeEEEEEccC
Q 005096 314 MVLCVKW--NQNGNWVLTASK------DQIIKLYDIRAMKE--LESF--RGH----------------RKDVTALAWHPF 365 (715)
Q Consensus 314 ~I~sl~~--spdg~~Lasgs~------dg~I~iwDl~t~~~--~~~~--~~h----------------~~~V~~l~~sp~ 365 (715)
....|.| +++++++++++. +++|.+|..+.++. +..+ ... ......|.++++
T Consensus 252 ~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~D 331 (462)
T 2ece_A 252 MALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLD 331 (462)
T ss_dssp EEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTT
T ss_pred ccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCC
Confidence 3455655 999999888774 56888776654432 1111 110 245788999994
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCCce---EEEeeccC-------------CCEEEEEEcCCCCEEEEEE
Q 005096 366 HEEYFVSGSLDGSIFHWLVGHETPQ---VEIHNVHD-------------NTVWDLAWHPIGYLLCSGS 417 (715)
Q Consensus 366 ~~~~l~sgs~DG~I~iwd~~~~~~~---~~~~~~h~-------------~~V~~l~~spdg~~L~sgs 417 (715)
+..++++.-..+.|.+||+...... ..+..+-. +.-..+++++||++|+++.
T Consensus 332 GrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 332 DKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp SCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred CCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 4444455556789999999643222 22222100 1247899999999999888
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=99.28 E-value=5.9e-09 Score=106.63 Aligned_cols=251 Identities=6% Similarity=-0.039 Sum_probs=160.4
Q ss_pred CEEEEEeCCCeEEEEeCCCCce-----EEEEeccCCCEEEEEEcCCCCEEEEE-eCCCcEEEEeCCCCceeeeecCCCCC
Q 005096 157 RRLITGSQSGEFTLWNGQSFNF-----EMILQAHDHAIRSMVWSHNDNWMVSG-DDGGAIKYWQNNMNNVKANKSAHKES 230 (715)
Q Consensus 157 ~~Latgs~dg~I~Iwd~~~~~~-----~~~l~~h~~~V~~l~~spdg~~L~tg-s~dg~I~iwd~~~~~~~~~~~~h~~~ 230 (715)
.+|+.+.. +.|+.++++.... ...+......+..++|+++++.|+.+ ..++.|.+++.+.......+......
T Consensus 2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~ 80 (267)
T 1npe_A 2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGS 80 (267)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCC
T ss_pred cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCC
Confidence 35555554 4688888765432 12222223467899999876666554 45689999998876544433333357
Q ss_pred eEEEEEecCCCEEEEEE-CCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeC---CCcEEEEECCCCceeE
Q 005096 231 VRDLSFCRTDLKFCSCS-DDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGK---DSLVKLWDAKSGRELC 306 (715)
Q Consensus 231 I~~l~~spd~~~Las~s-~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~---Dg~I~iwDl~s~~~~~ 306 (715)
...+++++++..|+.+. .++.|.++|++.......+.........+++++++..|+++.. .+.|..++++......
T Consensus 81 p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~ 160 (267)
T 1npe_A 81 PEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRI 160 (267)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEE
T ss_pred ccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEE
Confidence 88999998766666554 4678999998654332223323356789999997666666554 3688888886433222
Q ss_pred EeccCCCceEEEEEcCCCCEEEEEE-CCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcC
Q 005096 307 SFHGHKNMVLCVKWNQNGNWVLTAS-KDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVG 385 (715)
Q Consensus 307 ~~~~~~~~I~sl~~spdg~~Lasgs-~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~ 385 (715)
...........+++++++++|+++. ..+.|.++|+........+. .......|++. ++.++++...++.|.++|..
T Consensus 161 ~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~-~~~~P~gi~~d--~~~lyva~~~~~~v~~~d~~ 237 (267)
T 1npe_A 161 LAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLE-GLQYPFAVTSY--GKNLYYTDWKTNSVIAMDLA 237 (267)
T ss_dssp EECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEE-CCCSEEEEEEE--TTEEEEEETTTTEEEEEETT
T ss_pred EEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEec-CCCCceEEEEe--CCEEEEEECCCCeEEEEeCC
Confidence 2222335678999999887776665 45799999997544333333 23445667653 45566666667899999998
Q ss_pred CCCceEEEeeccCCCEEEEEEcCCCC
Q 005096 386 HETPQVEIHNVHDNTVWDLAWHPIGY 411 (715)
Q Consensus 386 ~~~~~~~~~~~h~~~V~~l~~spdg~ 411 (715)
+++....+..+.......+++.+++.
T Consensus 238 ~g~~~~~i~~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 238 ISKEMDTFHPHKQTRLYGITIALSQC 263 (267)
T ss_dssp TTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred CCCceEEEccccccccceeeecCccC
Confidence 77665555433222467777777754
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.26 E-value=7.2e-11 Score=123.99 Aligned_cols=258 Identities=13% Similarity=0.056 Sum_probs=172.8
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeecCCCC
Q 005096 150 VLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKE 229 (715)
Q Consensus 150 l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~ 229 (715)
+.+..++ .|++++.++.|..|| .+++....+......+.++....++. |++++.+ |..+|. +++....+.....
T Consensus 25 ~~~d~~g-~l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~~~~~~~~~~ 98 (330)
T 3hxj_A 25 PILAKNG-TIYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIGKDGT-IYFGSDK--VYAINP-DGTEKWRFDTKKA 98 (330)
T ss_dssp CEECTTS-CEECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEETTTTE-ECCSSCE--EEEECC-CGGGGGGSCC---
T ss_pred ceEccCC-eEEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEEecCCc-EEEecCc--EEEECC-CCcEEEEEECCCC
Confidence 3444455 467777888899999 88877666555555567777776665 5555554 888885 5554444333333
Q ss_pred CeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEec
Q 005096 230 SVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFH 309 (715)
Q Consensus 230 ~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~ 309 (715)
.+....+. +..|.+++.++.|..+|.+ ++....+......+.++....++. |++++.++.|..||.+ ++.+..+.
T Consensus 99 ~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~ 173 (330)
T 3hxj_A 99 IVSDFTIF--EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFK 173 (330)
T ss_dssp --CCEEEE--TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEE
T ss_pred cccCceEE--CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEe
Confidence 33334443 5668888889999999988 666666655555667777777776 6667788999999998 87777776
Q ss_pred cCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCc
Q 005096 310 GHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETP 389 (715)
Q Consensus 310 ~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~ 389 (715)
.....+.++.+..++.++ +++ +.|..|| .+++.+..+......+.++.... ++ .|..++.++.|..+|. ++..
T Consensus 174 ~~~~~~~~~~~d~~g~l~-v~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~-~g-~l~v~t~~~gl~~~~~-~g~~ 246 (330)
T 3hxj_A 174 TNDAITSAASIGKDGTIY-FGS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISE-DG-TIYVTSLDGHLYAINP-DGTE 246 (330)
T ss_dssp CSSCCCSCCEECTTCCEE-EES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECT-TS-CEEEEETTTEEEEECT-TSCE
T ss_pred cCCCceeeeEEcCCCEEE-EEe--CEEEEEC-CCCcEEEEEccCCcceeceEECC-CC-eEEEEcCCCeEEEECC-CCCE
Confidence 556667778887777744 444 7899999 78888877776667788888875 34 4555677788888874 3333
Q ss_pred eEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEec
Q 005096 390 QVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCR 427 (715)
Q Consensus 390 ~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl 427 (715)
..... .....+.++.+..++ .|.+++.+|.|..+|.
T Consensus 247 ~~~~~-~~~~~~~~~~~~~~g-~l~v~t~~ggl~~~d~ 282 (330)
T 3hxj_A 247 KWRFK-TGKRIESSPVIGNTD-TIYFGSYDGHLYAINP 282 (330)
T ss_dssp EEEEE-CSSCCCSCCEECTTS-CEEEECTTCEEEEECT
T ss_pred eEEee-CCCCccccceEcCCC-eEEEecCCCCEEEECC
Confidence 33332 233334455665555 4667788888888874
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.25 E-value=2.1e-12 Score=139.55 Aligned_cols=204 Identities=11% Similarity=0.031 Sum_probs=118.3
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCC-ceE-
Q 005096 197 NDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGW-DVK- 274 (715)
Q Consensus 197 dg~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~-~I~- 274 (715)
++..|++++.|+.|+.||..+++.+..+.. ..+.+..+..++..+++++.|+.|+.||.++++.+..+..+.. .+.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~ 85 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQA 85 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccccc
Confidence 578899999999999999999998877765 4555555566777788888999999999988877655543211 111
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCC
Q 005096 275 SVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHR 354 (715)
Q Consensus 275 si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~ 354 (715)
+..+. ++..|++++.|+.|+.||.++|+.+..+..+. .+.+++++..|++++.|+.|+.||.++++.+..+....
T Consensus 86 sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~ 160 (369)
T 2hz6_A 86 SPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFD 160 (369)
T ss_dssp CSCC------CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCSSSSSCCCEEEEEE
T ss_pred CceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEEEEEECCCCCEEEeEeccc
Confidence 11111 34567888889999999999999888776443 23455688889999999999999999998877665321
Q ss_pred CCeEEEEEccCC--CCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEE-EEEcCCCC
Q 005096 355 KDVTALAWHPFH--EEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWD-LAWHPIGY 411 (715)
Q Consensus 355 ~~V~~l~~sp~~--~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~-l~~spdg~ 411 (715)
....+++.+. +..+++++.||.|+.||.++++.+.+.. ....+.. ..++.++.
T Consensus 161 --~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~--~~~pv~~~~~~~~dg~ 216 (369)
T 2hz6_A 161 --YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN--YASPVVAFYVWQREGL 216 (369)
T ss_dssp --ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEE--CSSCEEEEEECTTSSC
T ss_pred --ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEec--CCCceEEEEEecCCce
Confidence 1222222210 1556778899999999999887765544 2344433 34444554
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=99.24 E-value=1.1e-10 Score=125.66 Aligned_cols=244 Identities=9% Similarity=-0.054 Sum_probs=164.1
Q ss_pred EEEEcCCCCEEEEEe----------CCCeEEEEeCCCCceEEEEeccC-------CCEEEEEEcCCCCEEEEEeC--CCc
Q 005096 149 RVLWTPTGRRLITGS----------QSGEFTLWNGQSFNFEMILQAHD-------HAIRSMVWSHNDNWMVSGDD--GGA 209 (715)
Q Consensus 149 ~l~~spdg~~Latgs----------~dg~I~Iwd~~~~~~~~~l~~h~-------~~V~~l~~spdg~~L~tgs~--dg~ 209 (715)
.+++++|+++|+++. .++.|.+||..+++.+.++.... .....+++++|+++|+++.. +..
T Consensus 69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~ 148 (368)
T 1mda_H 69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAA 148 (368)
T ss_dssp EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCE
T ss_pred ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCe
Confidence 699999999999886 36889999999999999986541 23568899999999998874 467
Q ss_pred EEE--EeCCCCceeeeecCCCCCeEEEEEecCC-CEEEEEECCCcEEEEECCC-----CeeEEE----ecccCCceEEEE
Q 005096 210 IKY--WQNNMNNVKANKSAHKESVRDLSFCRTD-LKFCSCSDDTTVKVWDFAR-----CQEERS----LTGHGWDVKSVD 277 (715)
Q Consensus 210 I~i--wd~~~~~~~~~~~~h~~~I~~l~~spd~-~~Las~s~Dg~V~iwdl~~-----~~~~~~----l~~~~~~I~si~ 277 (715)
|.+ +|..+ +..+... .. +.+.+++ ..+++.+.|+.+.+.|+++ ++.... +....... +
T Consensus 149 v~V~~iD~~t---v~~i~v~-~~---~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~ 218 (368)
T 1mda_H 149 AGLSVPGASD---DQLTKSA-SC---FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q 218 (368)
T ss_dssp EEEEETTTEE---EEEEECS-SC---CCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E
T ss_pred EEEEEEchhh---ceEEECC-Cc---eEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c
Confidence 888 88876 2333211 11 1223333 4456667788888899876 333211 11112222 3
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCCc--eeEEeccC----------CCceEEEEEcCCCCEEEEEEC-C--------CeE
Q 005096 278 WHPTKSLLVSGGKDSLVKLWDAKSGR--ELCSFHGH----------KNMVLCVKWNQNGNWVLTASK-D--------QII 336 (715)
Q Consensus 278 ~spdg~~L~sgs~Dg~I~iwDl~s~~--~~~~~~~~----------~~~I~sl~~spdg~~Lasgs~-d--------g~I 336 (715)
++++..++..+. +.|.+.|+.+.. .+..+... ......++|++|+++|+++.. + +.+
T Consensus 219 -~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~ 296 (368)
T 1mda_H 219 -ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENT 296 (368)
T ss_dssp -ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEE
T ss_pred -cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCE
Confidence 556666666666 999999997542 22222110 011122789999998887643 2 356
Q ss_pred EEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEe-CCCcEEEEEcCCCCceEEEeeccCCCEEEEEEc
Q 005096 337 KLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGS-LDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWH 407 (715)
Q Consensus 337 ~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs-~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s 407 (715)
.++|+.+.+.+.++.... ....|+|++++..++++.. .++.|.++|+.+.+.+..+.. ....+.+++.
T Consensus 297 ~ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~v--g~~P~~i~~~ 365 (368)
T 1mda_H 297 SSVTASVGQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVEL--DKGPESLSVQ 365 (368)
T ss_dssp EEEESSSCCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCC--CSCCCEEECC
T ss_pred EEEECCCCeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEEC--CCCCCEEEee
Confidence 799999999988887443 6899999995556788888 699999999998876655443 2344555554
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.24 E-value=9.3e-09 Score=111.58 Aligned_cols=219 Identities=12% Similarity=0.063 Sum_probs=151.9
Q ss_pred CCCCEEEEE-eCCCeEEEEeCCCC----ceEEEEe------c-cCCCEEEEEEcCCCCEEEEEeCC------CcEEEEeC
Q 005096 154 PTGRRLITG-SQSGEFTLWNGQSF----NFEMILQ------A-HDHAIRSMVWSHNDNWMVSGDDG------GAIKYWQN 215 (715)
Q Consensus 154 pdg~~Latg-s~dg~I~Iwd~~~~----~~~~~l~------~-h~~~V~~l~~spdg~~L~tgs~d------g~I~iwd~ 215 (715)
.++++|++. ..+++|+|+|+.+. +.+++++ . -...-..+..++++ +++++..+ +.|.++|.
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~ 171 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH 171 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence 788887765 55788999999765 6677763 1 11245667888999 66665554 78999999
Q ss_pred CCCceeeeecCCCC---CeEEEEEecCCCEEEEEE-------------------CCCcEEEEECCCCeeEEEecccC--C
Q 005096 216 NMNNVKANKSAHKE---SVRDLSFCRTDLKFCSCS-------------------DDTTVKVWDFARCQEERSLTGHG--W 271 (715)
Q Consensus 216 ~~~~~~~~~~~h~~---~I~~l~~spd~~~Las~s-------------------~Dg~V~iwdl~~~~~~~~l~~~~--~ 271 (715)
++.+++..+..... .-..+.|+++++.+++.. .+.+|.+||+.+++.+.++.... .
T Consensus 172 ~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~ 251 (462)
T 2ece_A 172 YSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENR 251 (462)
T ss_dssp TTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEE
T ss_pred CCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCC
Confidence 99998888763322 234578899999888885 36899999999988887776431 2
Q ss_pred ceEEEEE--cCCCCEEEEEe------CCCcEEEEECCCCce--eEEe--ccC----------------CCceEEEEEcCC
Q 005096 272 DVKSVDW--HPTKSLLVSGG------KDSLVKLWDAKSGRE--LCSF--HGH----------------KNMVLCVKWNQN 323 (715)
Q Consensus 272 ~I~si~~--spdg~~L~sgs------~Dg~I~iwDl~s~~~--~~~~--~~~----------------~~~I~sl~~spd 323 (715)
....|.| +|+++++++++ .+++|.+|..+.++. +..+ ... ......|.+++|
T Consensus 252 ~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~D 331 (462)
T 2ece_A 252 MALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLD 331 (462)
T ss_dssp EEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTT
T ss_pred ccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCC
Confidence 3445555 99999888776 456787766554321 1111 110 244788999999
Q ss_pred CCEEEEEEC-CCeEEEEECC---CCeEEEEeecCCC--------------CeEEEEEccCCCCEEEEEe
Q 005096 324 GNWVLTASK-DQIIKLYDIR---AMKELESFRGHRK--------------DVTALAWHPFHEEYFVSGS 374 (715)
Q Consensus 324 g~~Lasgs~-dg~I~iwDl~---t~~~~~~~~~h~~--------------~V~~l~~sp~~~~~l~sgs 374 (715)
+++|+++.. .+.|.+||+. +.+.+..+..... .-..+++++ ++++|+++.
T Consensus 332 GrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSp-DGk~LyVaN 399 (462)
T 2ece_A 332 DKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISR-DGRRVYVTN 399 (462)
T ss_dssp SCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECT-TSSEEEEEC
T ss_pred CCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcC-CCCEEEEEc
Confidence 999998875 6799999986 3455555543311 357899999 666666665
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.23 E-value=5e-10 Score=130.45 Aligned_cols=271 Identities=10% Similarity=0.079 Sum_probs=179.3
Q ss_pred CCEEEEEeCCCeEEEEeCCCCceEEEEeccCCC----------E-EEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeee
Q 005096 156 GRRLITGSQSGEFTLWNGQSFNFEMILQAHDHA----------I-RSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANK 224 (715)
Q Consensus 156 g~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~----------V-~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~ 224 (715)
+..|++++.++.|+.+|.++++.+-.+...... + ..+++ ++..|++++.|+.|..+|.++++++..+
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~~ 143 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWSQ 143 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCEeeee
Confidence 457888888999999999999988877543211 0 11233 3567888889999999999999887766
Q ss_pred cCCC----CCeEE-EEEecCCCEEEEEEC------CCcEEEEECCCCeeEEEecccC-----------------------
Q 005096 225 SAHK----ESVRD-LSFCRTDLKFCSCSD------DTTVKVWDFARCQEERSLTGHG----------------------- 270 (715)
Q Consensus 225 ~~h~----~~I~~-l~~spd~~~Las~s~------Dg~V~iwdl~~~~~~~~l~~~~----------------------- 270 (715)
.... ..+.+ ..+ .++ .+++++. ++.|+.||.++++.+-.+....
T Consensus 144 ~~~~~~~~~~~~~~P~v-~~~-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~ 221 (668)
T 1kv9_A 144 QTTDPAKPYSITGAPRV-VKG-KVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQ 221 (668)
T ss_dssp ECSCTTSSCBCCSCCEE-ETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSC
T ss_pred ccCCCCCcceecCCCEE-ECC-EEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccc
Confidence 5421 11111 111 133 4555433 5899999999999887764210
Q ss_pred --------CceEEEEEcCCCCEEEEEeCCC-------------------cEEEEECCCCceeEEecc--CC-------Cc
Q 005096 271 --------WDVKSVDWHPTKSLLVSGGKDS-------------------LVKLWDAKSGRELCSFHG--HK-------NM 314 (715)
Q Consensus 271 --------~~I~si~~spdg~~L~sgs~Dg-------------------~I~iwDl~s~~~~~~~~~--~~-------~~ 314 (715)
.....++++++.+++++++.++ .|..+|.++++.+..+.. |. ..
T Consensus 222 ~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~ 301 (668)
T 1kv9_A 222 YWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQ 301 (668)
T ss_dssp HHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSC
T ss_pred eeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCC
Confidence 0112478888888888887766 399999999999888763 21 22
Q ss_pred eEEEEEcCCCC---EEEEEECCCeEEEEECCCCeEEEEeecCCC------------C-----------------------
Q 005096 315 VLCVKWNQNGN---WVLTASKDQIIKLYDIRAMKELESFRGHRK------------D----------------------- 356 (715)
Q Consensus 315 I~sl~~spdg~---~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~------------~----------------------- 356 (715)
.....+..+++ +|++++.+|.|+++|.++++.+..+..... .
T Consensus 302 ~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~ 381 (668)
T 1kv9_A 302 ITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAH 381 (668)
T ss_dssp EEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSS
T ss_pred cEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCcccc
Confidence 22233333665 688999999999999999998854432210 0
Q ss_pred -eEEEEEccCCCCEEEEE-----------------------------------eCCCcEEEEEcCCCCceEEEeeccCCC
Q 005096 357 -VTALAWHPFHEEYFVSG-----------------------------------SLDGSIFHWLVGHETPQVEIHNVHDNT 400 (715)
Q Consensus 357 -V~~l~~sp~~~~~l~sg-----------------------------------s~DG~I~iwd~~~~~~~~~~~~~h~~~ 400 (715)
-..++++++.+.+++.. ..+|.|..||..+++.+.+.... ..
T Consensus 382 ~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~--~~ 459 (668)
T 1kv9_A 382 NWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYP--TH 459 (668)
T ss_dssp CSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEES--SS
T ss_pred CCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCC--CC
Confidence 01256676333333211 12478999999998877766542 23
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEecCCCCC
Q 005096 401 VWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGD 432 (715)
Q Consensus 401 V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~~ 432 (715)
+....+...+.+|++++.|+.|++||.+..+.
T Consensus 460 ~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~ 491 (668)
T 1kv9_A 460 WNGGTLSTAGNLVFQGTAAGQMHAYSADKGEA 491 (668)
T ss_dssp CCCCEEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred CcCceeEeCCCEEEEECCcccchhhhhhcChh
Confidence 33334445678899999999999999865443
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.23 E-value=2.5e-10 Score=121.74 Aligned_cols=227 Identities=7% Similarity=-0.038 Sum_probs=153.7
Q ss_pred CCCccEEEEEEcCCCCEEEEEeC-----CCeEEEEeCCCCceEEEEecc------CCCEEEEEEcCCCCEE-EEEe---C
Q 005096 142 KNRCSINRVLWTPTGRRLITGSQ-----SGEFTLWNGQSFNFEMILQAH------DHAIRSMVWSHNDNWM-VSGD---D 206 (715)
Q Consensus 142 ~H~~~I~~l~~spdg~~Latgs~-----dg~I~Iwd~~~~~~~~~l~~h------~~~V~~l~~spdg~~L-~tgs---~ 206 (715)
.|...+.+|+|+++++++++-.. ++.|.+||+++++.+..+... ...+..+++++++..+ ++.. .
T Consensus 64 ~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~ 143 (343)
T 2qe8_A 64 ITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDD 143 (343)
T ss_dssp CCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGG
T ss_pred cceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCC
Confidence 56678999999999876555443 578999999999877776542 2346889999765555 4444 5
Q ss_pred CCcEEEEeCCCCceeeeecCCCCCeE-EEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEE
Q 005096 207 GGAIKYWQNNMNNVKANKSAHKESVR-DLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLL 285 (715)
Q Consensus 207 dg~I~iwd~~~~~~~~~~~~h~~~I~-~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L 285 (715)
++.|.+||+.+++....+..|..... ...+..++..+.+.+.++.++.|. ..+..|+|++|++.|
T Consensus 144 ~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~--------------~~~~gia~s~dg~~l 209 (343)
T 2qe8_A 144 KAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPH--------------LGVNGIVLDAENEWL 209 (343)
T ss_dssp GCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCC--------------CCEEEEEECTTSCEE
T ss_pred CCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceecee--------------cccceeEeccCCCEE
Confidence 78999999998887766644322111 134455777777777888776653 236789999999988
Q ss_pred EEEeCCC-cEEEEECC---CCc-----ee--EEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeec-C
Q 005096 286 VSGGKDS-LVKLWDAK---SGR-----EL--CSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRG-H 353 (715)
Q Consensus 286 ~sgs~Dg-~I~iwDl~---s~~-----~~--~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~-h 353 (715)
+++..++ .|..+|.. .+. .. ....++......++++++|+++++...++.|.+||.++++....... .
T Consensus 210 y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~ 289 (343)
T 2qe8_A 210 YLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEK 289 (343)
T ss_dssp EEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGG
T ss_pred EEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCc
Confidence 8887766 45555432 111 00 01112333456799999999888888899999999856764433332 2
Q ss_pred CCCeEEEEEccCCCCEEEEEeCCCcEEEEE
Q 005096 354 RKDVTALAWHPFHEEYFVSGSLDGSIFHWL 383 (715)
Q Consensus 354 ~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd 383 (715)
.....++++.+ ++.++++.+..+.+.+|.
T Consensus 290 ~~~p~~va~~~-~g~l~v~~~~~~~~~~f~ 318 (343)
T 2qe8_A 290 LSWTDSFNFGS-DGYLYFDCNQLHHSAPLN 318 (343)
T ss_dssp GSCEEEEEECT-TSCEEEEECCGGGSGGGB
T ss_pred eecCCeeEECC-CCcEEEEeCccccccccc
Confidence 45688999988 577777776555554443
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=99.13 E-value=1.3e-09 Score=122.13 Aligned_cols=266 Identities=12% Similarity=0.088 Sum_probs=182.3
Q ss_pred EEEEeCCCeEEEEeCCCCceEEEEec---------------------------------c------CCCEEEEEEcC---
Q 005096 159 LITGSQSGEFTLWNGQSFNFEMILQA---------------------------------H------DHAIRSMVWSH--- 196 (715)
Q Consensus 159 Latgs~dg~I~Iwd~~~~~~~~~l~~---------------------------------h------~~~V~~l~~sp--- 196 (715)
+.+|+..|.|+|+-+-+.+.++.+.. + .+.......|.
T Consensus 18 f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~gd~hh~~~s~t~g 97 (595)
T 1fwx_A 18 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG 97 (595)
T ss_dssp EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCCCCBCCEEEEEETT
T ss_pred EeeCCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecccCCCCccccCCCCC
Confidence 45677788888887777766665410 0 12223355555
Q ss_pred --CCCEEEEEeC-CCcEEEEeCCCCceeeeecC-CCCCeEEEEE-e-cCCCEEEEEEC------------------CCcE
Q 005096 197 --NDNWMVSGDD-GGAIKYWQNNMNNVKANKSA-HKESVRDLSF-C-RTDLKFCSCSD------------------DTTV 252 (715)
Q Consensus 197 --dg~~L~tgs~-dg~I~iwd~~~~~~~~~~~~-h~~~I~~l~~-s-pd~~~Las~s~------------------Dg~V 252 (715)
||++|+++.. +..|.+.|+.+.++...+.. ....+..+++ + ++++++++++. ++.|
T Consensus 98 ~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~v 177 (595)
T 1fwx_A 98 KYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVF 177 (595)
T ss_dssp EEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEE
T ss_pred CcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceE
Confidence 7888877655 46799999999987775543 2356888887 4 89999988852 4579
Q ss_pred EEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCC--------------------------------------cE
Q 005096 253 KVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDS--------------------------------------LV 294 (715)
Q Consensus 253 ~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg--------------------------------------~I 294 (715)
.++|.++.+....+.... .-..++++++|+++++++.+. .|
T Consensus 178 tvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V 256 (595)
T 1fwx_A 178 TAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGV 256 (595)
T ss_dssp EEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTE
T ss_pred EEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcE
Confidence 999999988888776433 456788999999999888653 36
Q ss_pred EEEECCC--Cce-eEEeccCCCceEEEEEcCCCCEEEEEE-CCCeEEEEECCCCe------------EEEEeecCCCCeE
Q 005096 295 KLWDAKS--GRE-LCSFHGHKNMVLCVKWNQNGNWVLTAS-KDQIIKLYDIRAMK------------ELESFRGHRKDVT 358 (715)
Q Consensus 295 ~iwDl~s--~~~-~~~~~~~~~~I~sl~~spdg~~Lasgs-~dg~I~iwDl~t~~------------~~~~~~~h~~~V~ 358 (715)
.+.|.++ ++. +..+. -.....++.++|||+++++++ .+.+|.++|+++.+ .+..+ .-.....
T Consensus 257 ~VID~~~~~~~~~~~~Ip-vg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v-~vG~gP~ 334 (595)
T 1fwx_A 257 KVVDGRKEASSLFTRYIP-IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEP-ELGLGPL 334 (595)
T ss_dssp EEEECSGGGCCSSEEEEE-EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECC-BCCSCEE
T ss_pred EEEeCcccCCceeEEEEe-cCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEc-CCCCCcc
Confidence 6677776 444 33443 223467899999999888776 67799999998653 22222 2445688
Q ss_pred EEEEccCCCCEEEEEeCCCcEEEEEcCCC---------CceEEEeeccCCCE-----EEEEEcCCCCEEEEEEC---CCe
Q 005096 359 ALAWHPFHEEYFVSGSLDGSIFHWLVGHE---------TPQVEIHNVHDNTV-----WDLAWHPIGYLLCSGSN---DHT 421 (715)
Q Consensus 359 ~l~~sp~~~~~l~sgs~DG~I~iwd~~~~---------~~~~~~~~~h~~~V-----~~l~~spdg~~L~sgs~---Dg~ 421 (715)
.++|++ ++..+++...|+.|.+||+... ...+.....|-..- .++.+++||++|+++.. |..
T Consensus 335 h~aF~~-dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~ 413 (595)
T 1fwx_A 335 HTAFDG-RGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRF 413 (595)
T ss_dssp EEEECT-TSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSS
T ss_pred eEEECC-CCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCcccc
Confidence 999999 4566777788999999999761 23333333333221 12245789999998865 332
Q ss_pred ----------EEEEecC
Q 005096 422 ----------TKFWCRN 428 (715)
Q Consensus 422 ----------I~iWdl~ 428 (715)
-.++|+.
T Consensus 414 ~~~gp~~~~~~ql~dis 430 (595)
T 1fwx_A 414 LNVGPLKPENDQLIDIS 430 (595)
T ss_dssp CCCCSSCCEEEEEEECS
T ss_pred ccCCCCCCCcceEEEcC
Confidence 2788884
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.12 E-value=1.1e-08 Score=119.05 Aligned_cols=258 Identities=8% Similarity=0.049 Sum_probs=168.2
Q ss_pred CCEEEEEeCCCeEEEEeCCCCceEEEEeccC----CCEEE-EEEcCCCCEEEEEeC------CCcEEEEeCCCCceeeee
Q 005096 156 GRRLITGSQSGEFTLWNGQSFNFEMILQAHD----HAIRS-MVWSHNDNWMVSGDD------GGAIKYWQNNMNNVKANK 224 (715)
Q Consensus 156 g~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~----~~V~~-l~~spdg~~L~tgs~------dg~I~iwd~~~~~~~~~~ 224 (715)
+..|++++.|+.|+.+|.++++.+..+.... ..+.+ ..+ .+..++++.. +|.|..+|.++++++..+
T Consensus 117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v--~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~ 194 (668)
T 1kv9_A 117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRV--VKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRF 194 (668)
T ss_dssp BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEE--ECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEe
Confidence 5578889999999999999999887776531 11111 111 1345555543 589999999999887766
Q ss_pred cCCC-------------------------------CCeEEEEEecCCCEEEEEECCC-------------------cEEE
Q 005096 225 SAHK-------------------------------ESVRDLSFCRTDLKFCSCSDDT-------------------TVKV 254 (715)
Q Consensus 225 ~~h~-------------------------------~~I~~l~~spd~~~Las~s~Dg-------------------~V~i 254 (715)
.... .....+++.++...++.++.++ .|..
T Consensus 195 ~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~A 274 (668)
T 1kv9_A 195 YTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILA 274 (668)
T ss_dssp ESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEE
T ss_pred cccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEE
Confidence 4210 0112467888888888887766 3999
Q ss_pred EECCCCeeEEEeccc--C-------CceEEEEEcCCCC---EEEEEeCCCcEEEEECCCCceeEEeccCC----------
Q 005096 255 WDFARCQEERSLTGH--G-------WDVKSVDWHPTKS---LLVSGGKDSLVKLWDAKSGRELCSFHGHK---------- 312 (715)
Q Consensus 255 wdl~~~~~~~~l~~~--~-------~~I~si~~spdg~---~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~---------- 312 (715)
+|.++++.+-.+... . ..+....+..+++ .|++++.+|.|+++|.++|+.+..+....
T Consensus 275 lD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~ 354 (668)
T 1kv9_A 275 IRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLA 354 (668)
T ss_dssp ECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTT
T ss_pred EcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccc
Confidence 999999988777542 1 1222222223564 68889999999999999999875432111
Q ss_pred --Cce------------------------EEEEEcCCCCEEEEEE-----------------------------------
Q 005096 313 --NMV------------------------LCVKWNQNGNWVLTAS----------------------------------- 331 (715)
Q Consensus 313 --~~I------------------------~sl~~spdg~~Lasgs----------------------------------- 331 (715)
..+ ..++++++..++++..
T Consensus 355 ~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~ 434 (668)
T 1kv9_A 355 TGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAA 434 (668)
T ss_dssp TCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGG
T ss_pred cCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCC
Confidence 000 1256777766665421
Q ss_pred -CCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCC
Q 005096 332 -KDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIG 410 (715)
Q Consensus 332 -~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg 410 (715)
.+|.|..||+++++.+.++...... ....+.. .+.++++++.||.|++||.++++.+.++.........-+.+..+|
T Consensus 435 ~~~g~l~A~D~~tG~~~W~~~~~~~~-~~~~~~t-~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~~~~G 512 (668)
T 1kv9_A 435 VVSGALLAWDPVKQKAAWKVPYPTHW-NGGTLST-AGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAG 512 (668)
T ss_dssp GCEEEEEEEETTTTEEEEEEEESSSC-CCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETT
T ss_pred CccceEEEEeCCCCcEEEEccCCCCC-cCceeEe-CCCEEEEECCcccchhhhhhcChhheEecCCCCcccCceEEEECC
Confidence 2378999999999999887754332 2222333 567888889999999999999988777665322111233444566
Q ss_pred C-EEEEEE
Q 005096 411 Y-LLCSGS 417 (715)
Q Consensus 411 ~-~L~sgs 417 (715)
+ ++++++
T Consensus 513 ~~yva~~~ 520 (668)
T 1kv9_A 513 RQYVAIMA 520 (668)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEEe
Confidence 5 444443
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=3.3e-08 Score=104.03 Aligned_cols=238 Identities=11% Similarity=0.047 Sum_probs=155.1
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEec-------------------cCCCEEEEEEcCCCCEEEEEe
Q 005096 145 CSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQA-------------------HDHAIRSMVWSHNDNWMVSGD 205 (715)
Q Consensus 145 ~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~-------------------h~~~V~~l~~spdg~~L~tgs 205 (715)
....+++|++++++|+++..++.|..||..+.+....... ....+..+++.+++..|++++
T Consensus 19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d 98 (322)
T 2fp8_A 19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVD 98 (322)
T ss_dssp SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEE
T ss_pred CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEE
Confidence 4467788999998888888999999999876554332210 113578999997334555565
Q ss_pred CCCcEEEEeCCCCceeeeecC----CCCCeEEEEEec-CCCEEEEEEC-----------------CCcEEEEECCCCeeE
Q 005096 206 DGGAIKYWQNNMNNVKANKSA----HKESVRDLSFCR-TDLKFCSCSD-----------------DTTVKVWDFARCQEE 263 (715)
Q Consensus 206 ~dg~I~iwd~~~~~~~~~~~~----h~~~I~~l~~sp-d~~~Las~s~-----------------Dg~V~iwdl~~~~~~ 263 (715)
..+.|.++|..++........ .......+++.+ +++++++-.. ++.|..||..+++..
T Consensus 99 ~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~ 178 (322)
T 2fp8_A 99 CYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETT 178 (322)
T ss_dssp TTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEE
T ss_pred CCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEE
Confidence 555688888775543222111 123578899999 8876665432 367888998766543
Q ss_pred EEecccCCceEEEEEcCCCCEEEEE-eCCCcEEEEECCCCc--eeEEeccCCCceEEEEEcCCCCEEEEEEC--------
Q 005096 264 RSLTGHGWDVKSVDWHPTKSLLVSG-GKDSLVKLWDAKSGR--ELCSFHGHKNMVLCVKWNQNGNWVLTASK-------- 332 (715)
Q Consensus 264 ~~l~~~~~~I~si~~spdg~~L~sg-s~Dg~I~iwDl~s~~--~~~~~~~~~~~I~sl~~spdg~~Lasgs~-------- 332 (715)
.... .......|+|++++++|+++ ..++.|.+||+.... ....+..... ...+++.++|+++++...
T Consensus 179 ~~~~-~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~~~~ 256 (322)
T 2fp8_A 179 LLLK-ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSEELDGNMHG 256 (322)
T ss_dssp EEEE-EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEEETTSSTTS
T ss_pred Eecc-CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecCcccccccC
Confidence 3322 22345689999999866655 456889999987531 1222221223 788999999986666544
Q ss_pred --CCeEEEEECCCCeEEEEeecCC----CCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCC
Q 005096 333 --DQIIKLYDIRAMKELESFRGHR----KDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHE 387 (715)
Q Consensus 333 --dg~I~iwDl~t~~~~~~~~~h~----~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~ 387 (715)
.+.|.++|.. ++.+..+.... ..++++++. +++++++...++.|.++++...
T Consensus 257 ~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~~--~g~L~v~~~~~~~i~~~~~~~~ 314 (322)
T 2fp8_A 257 RVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQEH--DGLLYIGTLFHGSVGILVYDKK 314 (322)
T ss_dssp CEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEEE--TTEEEEECSSCSEEEEEEC---
T ss_pred CCccEEEEECCC-CCEEEEEECCCCCccccceEEEEe--CCEEEEeecCCCceEEEecccc
Confidence 4678888874 77777776442 346677663 5667776667788999987543
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=5.2e-08 Score=99.45 Aligned_cols=194 Identities=7% Similarity=-0.016 Sum_probs=139.8
Q ss_pred ccEEEEEEcCCCCEEEEEe-C--CCeEEEEeCCCCceEEEEeccCC-CEEEEEEcCCCCEE-EEEeCCCcEEEEeCCCCc
Q 005096 145 CSINRVLWTPTGRRLITGS-Q--SGEFTLWNGQSFNFEMILQAHDH-AIRSMVWSHNDNWM-VSGDDGGAIKYWQNNMNN 219 (715)
Q Consensus 145 ~~I~~l~~spdg~~Latgs-~--dg~I~Iwd~~~~~~~~~l~~h~~-~V~~l~~spdg~~L-~tgs~dg~I~iwd~~~~~ 219 (715)
.....++|++|+ .|+.++ . ++.|.++|..+++.+..+..... ....+++. ++.| ++.-.++.|.++|..+.+
T Consensus 21 ~f~~Gl~~~~dg-~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~ 97 (266)
T 2iwa_A 21 AFTQGLVYAEND-TLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLS 97 (266)
T ss_dssp CCEEEEEECSTT-EEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTE
T ss_pred CCcccEEEeCCC-eEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCc
Confidence 446899999987 455443 2 57999999999999988764222 23355664 4455 555567999999999998
Q ss_pred eeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccC-----CceEEEEEcCCCCEEEEEeCCCcE
Q 005096 220 VKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHG-----WDVKSVDWHPTKSLLVSGGKDSLV 294 (715)
Q Consensus 220 ~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~-----~~I~si~~spdg~~L~sgs~Dg~I 294 (715)
.+..+..... ....+++|++.|+++..++.|.++|.++.+.+..+.... ..++.+.|. ++.+++....++.|
T Consensus 98 v~~~i~~g~~--~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V 174 (266)
T 2iwa_A 98 NIKNFTHQMK--DGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCI 174 (266)
T ss_dssp EEEEEECCSS--SCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEE
T ss_pred EEEEEECCCC--CeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeE
Confidence 8887754311 123456688888877788999999999988887776322 236788888 67555555567899
Q ss_pred EEEECCCCceeEEeccC-------------CCceEEEEEcCCCCEEEEEE-CCCeEEEEECCCC
Q 005096 295 KLWDAKSGRELCSFHGH-------------KNMVLCVKWNQNGNWVLTAS-KDQIIKLYDIRAM 344 (715)
Q Consensus 295 ~iwDl~s~~~~~~~~~~-------------~~~I~sl~~spdg~~Lasgs-~dg~I~iwDl~t~ 344 (715)
.+.|.++++.+..+... ....+.|+|+++++.|++++ ..++|.+.|+...
T Consensus 175 ~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 175 ARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp EEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred EEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 99999999998887532 13568999999987666554 6778888887653
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=3.6e-07 Score=108.51 Aligned_cols=275 Identities=12% Similarity=0.097 Sum_probs=180.5
Q ss_pred CccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEec-------cCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 005096 144 RCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQA-------HDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNN 216 (715)
Q Consensus 144 ~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~-------h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~ 216 (715)
...|.++....++. |.+++.++-|.+||..+.+....... ....|.++....++.+.+ |+.+ -|.+||..
T Consensus 214 ~~~i~~i~~d~~g~-lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~ 290 (795)
T 4a2l_A 214 TKQIQAILQQSPTR-IWVATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWI-GTFN-DLNIYHEG 290 (795)
T ss_dssp CCCEEEEEEEETTE-EEEEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEE-EESS-CEEEEETT
T ss_pred CCeeEEEEEcCCCC-EEEEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEE-EeCC-hhheEcCC
Confidence 46788998888876 44555443499999887665443322 135699999988877555 4455 58889987
Q ss_pred CCceeeeec-------CCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEec------ccCCceEEEEEcCCCC
Q 005096 217 MNNVKANKS-------AHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLT------GHGWDVKSVDWHPTKS 283 (715)
Q Consensus 217 ~~~~~~~~~-------~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~------~~~~~I~si~~spdg~ 283 (715)
++....... .....|.+|....++. |.+|+.++-|.+||..+........ .....|.++..+.+++
T Consensus 291 ~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~ 369 (795)
T 4a2l_A 291 TDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKN 369 (795)
T ss_dssp TTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSC
T ss_pred CCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCC
Confidence 776544321 1345799999988876 5557777779999875543222111 1245699999988876
Q ss_pred EEEEEeCCCcEEEEECCCCceeEEecc--------CCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEee----
Q 005096 284 LLVSGGKDSLVKLWDAKSGRELCSFHG--------HKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFR---- 351 (715)
Q Consensus 284 ~L~sgs~Dg~I~iwDl~s~~~~~~~~~--------~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~---- 351 (715)
|.+|+.++-|.+||.++++....... ....|.++....++++|.+|+.++-|.+||.++++......
T Consensus 370 -lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~ 448 (795)
T 4a2l_A 370 -LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQ 448 (795)
T ss_dssp -EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSC
T ss_pred -EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCC
Confidence 55677777799999887654332211 23568999998888867778887889999998766433321
Q ss_pred cCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEee------ccCCCEEEEEEcCCCCEEEEEECCCeEEEE
Q 005096 352 GHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHN------VHDNTVWDLAWHPIGYLLCSGSNDHTTKFW 425 (715)
Q Consensus 352 ~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~------~h~~~V~~l~~spdg~~L~sgs~Dg~I~iW 425 (715)
.....|.++.... ++.+++. +. +-|.+||..+.... .+.. .....|.++....++.+.+.. . +-|.+|
T Consensus 449 l~~~~v~~i~~d~-~g~lwig-t~-~Gl~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt-~-~Gl~~~ 522 (795)
T 4a2l_A 449 LVNENVYAILPDG-EGNLWLG-TL-SALVRFNPEQRSFT-TIEKEKDGTPVVSKQITTLFRDSHKRLWIGG-E-EGLSVF 522 (795)
T ss_dssp CSCSCEEEEEECS-SSCEEEE-ES-SCEEEEETTTTEEE-ECCBCTTCCBCCCCCEEEEEECTTCCEEEEE-S-SCEEEE
T ss_pred cCCCeeEEEEECC-CCCEEEE-ec-CceeEEeCCCCeEE-EccccccccccCCceEEEEEECCCCCEEEEe-C-CceEEE
Confidence 2345788888876 5555544 44 45888887654321 1111 123579999999888765544 4 457777
Q ss_pred ecCC
Q 005096 426 CRNR 429 (715)
Q Consensus 426 dl~~ 429 (715)
+.+.
T Consensus 523 ~~~~ 526 (795)
T 4a2l_A 523 KQEG 526 (795)
T ss_dssp EEET
T ss_pred eCCC
Confidence 7643
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=2.8e-08 Score=113.45 Aligned_cols=255 Identities=9% Similarity=0.029 Sum_probs=164.2
Q ss_pred CCEEEEEeCCCeEEEEeCCCCceEEEEeccC----CCEEE-EEEcCCCCEEEEEeC------CCcEEEEeCCCCceeeee
Q 005096 156 GRRLITGSQSGEFTLWNGQSFNFEMILQAHD----HAIRS-MVWSHNDNWMVSGDD------GGAIKYWQNNMNNVKANK 224 (715)
Q Consensus 156 g~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~----~~V~~-l~~spdg~~L~tgs~------dg~I~iwd~~~~~~~~~~ 224 (715)
+..|++++.|+.|..+|.++++.+..+.... ..+.+ .... + ..+++++. ++.|..+|.++++.+..+
T Consensus 115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~-~-g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~ 192 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVA-K-DTVLMGCSGAELGVRGAVNAFDLKTGELKWRA 192 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-T-TEEEEECBCGGGTCCCEEEEEETTTCCEEEEE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEEE-C-CEEEEEecCCccCCCCEEEEEECCCCcEEEEE
Confidence 5578888999999999999999887765322 01211 1111 3 45665554 789999999999887665
Q ss_pred cCCCCC--------------------------------------eEEEEEecCCCEEEEEECC----------------C
Q 005096 225 SAHKES--------------------------------------VRDLSFCRTDLKFCSCSDD----------------T 250 (715)
Q Consensus 225 ~~h~~~--------------------------------------I~~l~~spd~~~Las~s~D----------------g 250 (715)
...... ...+++.++...|+.++.+ +
T Consensus 193 ~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~ 272 (571)
T 2ad6_A 193 FATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTM 272 (571)
T ss_dssp ESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTT
T ss_pred ccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEE
Confidence 432110 0135566666677766542 3
Q ss_pred cEEEEECCCCeeEEEecccCC------ceEE---EEEcCCCC---EEEEEeCCCcEEEEECCCCceeEEeccCC------
Q 005096 251 TVKVWDFARCQEERSLTGHGW------DVKS---VDWHPTKS---LLVSGGKDSLVKLWDAKSGRELCSFHGHK------ 312 (715)
Q Consensus 251 ~V~iwdl~~~~~~~~l~~~~~------~I~s---i~~spdg~---~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~------ 312 (715)
.|..+|.++++.+-.+..... .+.. +....+|+ .|++++.+|.|+++|.++++.+..+....
T Consensus 273 ~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~ 352 (571)
T 2ad6_A 273 TIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFK 352 (571)
T ss_dssp EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEE
T ss_pred EEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccc
Confidence 599999999998877653211 1111 22223563 57788899999999999999887654221
Q ss_pred -------Cce--------------------------EEEEEcCCCCEEEEEE----------------------------
Q 005096 313 -------NMV--------------------------LCVKWNQNGNWVLTAS---------------------------- 331 (715)
Q Consensus 313 -------~~I--------------------------~sl~~spdg~~Lasgs---------------------------- 331 (715)
..+ ..++++++..+|++.+
T Consensus 353 ~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~ 432 (571)
T 2ad6_A 353 KVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMY 432 (571)
T ss_dssp EECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEE
T ss_pred cccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceec
Confidence 111 2356788777777654
Q ss_pred ---------CCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEE
Q 005096 332 ---------KDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVW 402 (715)
Q Consensus 332 ---------~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~ 402 (715)
.++.|..||+++++.+.++..... +.+..+.. .+.++++++.||.|++||.++++.+.++.........
T Consensus 433 ~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~~-~~~~~~~t-~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~ 510 (571)
T 2ad6_A 433 PGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFA-AWGGTLYT-KGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGS 510 (571)
T ss_dssp ECTTSTTSCCCEEEEEECTTTCCEEEEEEESSC-CCSBCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSC
T ss_pred cCccccCCCCCCeEEEEECCCCCEEEEecCCCC-ccceeEEE-CCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEee
Confidence 247899999999999888764332 22222222 4567777899999999999999888777654322222
Q ss_pred EEEEcCCCCEEE
Q 005096 403 DLAWHPIGYLLC 414 (715)
Q Consensus 403 ~l~~spdg~~L~ 414 (715)
-+.+..+|++++
T Consensus 511 p~~~~~~G~~yv 522 (571)
T 2ad6_A 511 PMTYSFKGKQYI 522 (571)
T ss_dssp CEEEEETTEEEE
T ss_pred eEEEEECCEEEE
Confidence 233445665443
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=2.3e-08 Score=114.35 Aligned_cols=250 Identities=10% Similarity=0.001 Sum_probs=161.7
Q ss_pred EEEEEeCCCeEEEEeCCCCceEEEEeccCC----CEEE-EEEcCCCCEEEEEe------CCCcEEEEeCCCCceeeeecC
Q 005096 158 RLITGSQSGEFTLWNGQSFNFEMILQAHDH----AIRS-MVWSHNDNWMVSGD------DGGAIKYWQNNMNNVKANKSA 226 (715)
Q Consensus 158 ~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~----~V~~-l~~spdg~~L~tgs------~dg~I~iwd~~~~~~~~~~~~ 226 (715)
+|++++.|+.|+.+|.++++.+-....... .+.+ ..+. ++ .|++++ .++.|+.+|.++++++..+..
T Consensus 123 rV~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~-~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~ 200 (599)
T 1w6s_A 123 LILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVV-KD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYA 200 (599)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred EEEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEEE-CC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcC
Confidence 388889999999999999998877654320 1211 1111 33 555554 379999999999988766543
Q ss_pred CCCC-------------------------------------e-EEEEEecCCCEEEEEECC----------------CcE
Q 005096 227 HKES-------------------------------------V-RDLSFCRTDLKFCSCSDD----------------TTV 252 (715)
Q Consensus 227 h~~~-------------------------------------I-~~l~~spd~~~Las~s~D----------------g~V 252 (715)
.... + ..+++.++..+|+.++.+ +.|
T Consensus 201 ~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv 280 (599)
T 1w6s_A 201 TGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTI 280 (599)
T ss_dssp SSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEE
T ss_pred CCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceE
Confidence 2211 0 134566677778877765 379
Q ss_pred EEEECCCCeeEEEecccCCce---------EEEEEc-CCC---CEEEEEeCCCcEEEEECCCCceeEEeccCC-------
Q 005096 253 KVWDFARCQEERSLTGHGWDV---------KSVDWH-PTK---SLLVSGGKDSLVKLWDAKSGRELCSFHGHK------- 312 (715)
Q Consensus 253 ~iwdl~~~~~~~~l~~~~~~I---------~si~~s-pdg---~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~------- 312 (715)
..+|.++++.+-.+....... .-+... .+| +.|+.++.+|.|+++|.++++.+.......
T Consensus 281 ~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~ 360 (599)
T 1w6s_A 281 FGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKS 360 (599)
T ss_dssp EEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEE
T ss_pred EEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccc
Confidence 999999999887765432211 112222 457 467778899999999999999887654211
Q ss_pred ------Cce--------------------------EEEEEcCCCCEEEEEE-----------------------------
Q 005096 313 ------NMV--------------------------LCVKWNQNGNWVLTAS----------------------------- 331 (715)
Q Consensus 313 ------~~I--------------------------~sl~~spdg~~Lasgs----------------------------- 331 (715)
..+ ..++++++..+|++..
T Consensus 361 ~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~ 440 (599)
T 1w6s_A 361 VDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYP 440 (599)
T ss_dssp ECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEE
T ss_pred cccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceecc
Confidence 011 1345666666555431
Q ss_pred ----------CCCeEEEEECCCCeEEEEeecCCCCeEE-EEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCC
Q 005096 332 ----------KDQIIKLYDIRAMKELESFRGHRKDVTA-LAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNT 400 (715)
Q Consensus 332 ----------~dg~I~iwDl~t~~~~~~~~~h~~~V~~-l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~ 400 (715)
.+|.|..||+++++.+.+.......... +.. .+.+++.++.||.|+.||.++++.+.+........
T Consensus 441 ~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~t---agg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~~ 517 (599)
T 1w6s_A 441 GPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFAVWGGTMAT---AGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAI 517 (599)
T ss_dssp CTTSBTTTTBCCEEEEEECTTTCCEEEEEEESSCCCSBCEEE---TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCC
T ss_pred CCcCCcccCCCcCeEEEEECCCCCEEeEecCCCCccCcceEe---cCCEEEEECCCCeEEEEECCCCCEEEEeeCCCCcE
Confidence 3478999999999998887632221112 222 46677779999999999999999888775433222
Q ss_pred EEEEEEcCCCCE
Q 005096 401 VWDLAWHPIGYL 412 (715)
Q Consensus 401 V~~l~~spdg~~ 412 (715)
..-+.|..+|+.
T Consensus 518 ~~P~~y~~~G~q 529 (599)
T 1w6s_A 518 GYPMTYTHKGTQ 529 (599)
T ss_dssp SCCEEEEETTEE
T ss_pred eccEEEEeCCEE
Confidence 233455556653
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=1.4e-08 Score=116.08 Aligned_cols=269 Identities=11% Similarity=0.070 Sum_probs=172.6
Q ss_pred CCEEEEEeC-CCeEEEEeC-CCCceEEEEeccCCC-----------EEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceee
Q 005096 156 GRRLITGSQ-SGEFTLWNG-QSFNFEMILQAHDHA-----------IRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKA 222 (715)
Q Consensus 156 g~~Latgs~-dg~I~Iwd~-~~~~~~~~l~~h~~~-----------V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~ 222 (715)
+..|++++. ++.|+.+|. ++++.+-.+...... ...+++ ++..|++++.|+.|..+|..+++.+.
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W 139 (571)
T 2ad6_A 62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQANGHLLALDAKTGKINW 139 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence 446777777 889999999 899888776533210 011233 35678888889999999999998876
Q ss_pred eecCCCC----CeEE-EEEecCCCEEEEEEC------CCcEEEEECCCCeeEEEecccCCc-------------------
Q 005096 223 NKSAHKE----SVRD-LSFCRTDLKFCSCSD------DTTVKVWDFARCQEERSLTGHGWD------------------- 272 (715)
Q Consensus 223 ~~~~h~~----~I~~-l~~spd~~~Las~s~------Dg~V~iwdl~~~~~~~~l~~~~~~------------------- 272 (715)
....... .+.+ ..+. + ..+++++. ++.|+.+|.++++.+-.+......
T Consensus 140 ~~~~~~~~~~~~~~~~P~v~-~-g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~ 217 (571)
T 2ad6_A 140 EVEVCDPKVGSTLTQAPFVA-K-DTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQF 217 (571)
T ss_dssp EEECCCGGGTCBCCSCCEEE-T-TEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCS
T ss_pred EecCCCCCccceeccCCEEE-C-CEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCccccccccccccc
Confidence 6543220 1211 1111 3 45555554 789999999999988766532211
Q ss_pred -------------------eEEEEEcCCCCEEEEEeCC----------------CcEEEEECCCCceeEEeccCC--C--
Q 005096 273 -------------------VKSVDWHPTKSLLVSGGKD----------------SLVKLWDAKSGRELCSFHGHK--N-- 313 (715)
Q Consensus 273 -------------------I~si~~spdg~~L~sgs~D----------------g~I~iwDl~s~~~~~~~~~~~--~-- 313 (715)
...++++++..+|+.+..+ +.|..+|.++++.+..+.... .
T Consensus 218 ~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d 297 (571)
T 2ad6_A 218 GLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWD 297 (571)
T ss_dssp SHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSC
T ss_pred ccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccc
Confidence 0235667766777776532 259999999999988775321 1
Q ss_pred -----ceEEEEEcCCCC---EEEEEECCCeEEEEECCCCeEEEEeecCC-------------CCe---------------
Q 005096 314 -----MVLCVKWNQNGN---WVLTASKDQIIKLYDIRAMKELESFRGHR-------------KDV--------------- 357 (715)
Q Consensus 314 -----~I~sl~~spdg~---~Lasgs~dg~I~iwDl~t~~~~~~~~~h~-------------~~V--------------- 357 (715)
...-+....+|+ .|++++.+|.|+++|.++++.+..+.... ..+
T Consensus 298 ~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~ 377 (571)
T 2ad6_A 298 FAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTN 377 (571)
T ss_dssp CCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEE
T ss_pred cccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceE
Confidence 111122223674 57788899999999999999987765322 011
Q ss_pred -----------EEEEEccCCCCEEEEEe-------------------------------------CCCcEEEEEcCCCCc
Q 005096 358 -----------TALAWHPFHEEYFVSGS-------------------------------------LDGSIFHWLVGHETP 389 (715)
Q Consensus 358 -----------~~l~~sp~~~~~l~sgs-------------------------------------~DG~I~iwd~~~~~~ 389 (715)
..++++++ ..+|++.+ .+|.|..||..+++.
T Consensus 378 ~~P~~~Gg~~w~~~a~dp~-~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~ 456 (571)
T 2ad6_A 378 ICPSAMGFHNQGVDSYDPE-SRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKA 456 (571)
T ss_dssp ESSCTTCSSCSCBCEEETT-TTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCE
T ss_pred ECCCCccccCCCCceECCC-CCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCE
Confidence 23567773 34444332 357899999988887
Q ss_pred eEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCCCC
Q 005096 390 QVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPG 431 (715)
Q Consensus 390 ~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~ 431 (715)
+.+.... ..+....+...+.+|++++.||.|+.||.+..+
T Consensus 457 ~W~~~~~--~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~ 496 (571)
T 2ad6_A 457 KWTKWEK--FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGK 496 (571)
T ss_dssp EEEEEES--SCCCSBCEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred EEEecCC--CCccceeEEECCCEEEEEcCCCeEEEEECCCCC
Confidence 7666532 223333333346678889999999999986533
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=99.07 E-value=1.5e-07 Score=96.13 Aligned_cols=216 Identities=7% Similarity=-0.023 Sum_probs=144.7
Q ss_pred cEEEEEEcCCCCEEEEEe-CCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEE-eCCCcEEEEeCCCCceeee
Q 005096 146 SINRVLWTPTGRRLITGS-QSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSG-DDGGAIKYWQNNMNNVKAN 223 (715)
Q Consensus 146 ~I~~l~~spdg~~Latgs-~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tg-s~dg~I~iwd~~~~~~~~~ 223 (715)
.+.+++|+++++.|+.+. .++.|.+++.+.......+.........+++++++..|+.+ ..++.|.+++++.......
T Consensus 37 ~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~ 116 (267)
T 1npe_A 37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVL 116 (267)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred cEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEE
Confidence 478999999776666555 56899999988765544443333578899999876666544 5567899999875443333
Q ss_pred ecCCCCCeEEEEEecCCCEEEEEEC---CCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEe-CCCcEEEEEC
Q 005096 224 KSAHKESVRDLSFCRTDLKFCSCSD---DTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGG-KDSLVKLWDA 299 (715)
Q Consensus 224 ~~~h~~~I~~l~~spd~~~Las~s~---Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs-~Dg~I~iwDl 299 (715)
..........+++++++..|+.+.. .+.|.+++++.................++++++++.|+++. ..+.|.++|+
T Consensus 117 ~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~ 196 (267)
T 1npe_A 117 FDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNP 196 (267)
T ss_dssp ECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred EECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEec
Confidence 3222356789999997777666654 36888888764332222222334678999999877665554 5678999999
Q ss_pred CCCceeEEeccCCCceEEEEEcCCCCEEEEEE-CCCeEEEEECCCCeEEEEeecCC-CCeEEEEEcc
Q 005096 300 KSGRELCSFHGHKNMVLCVKWNQNGNWVLTAS-KDQIIKLYDIRAMKELESFRGHR-KDVTALAWHP 364 (715)
Q Consensus 300 ~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs-~dg~I~iwDl~t~~~~~~~~~h~-~~V~~l~~sp 364 (715)
+.......+.. ......+++. +..|+++. .++.|.++|..+++.+..+.... .....|++.+
T Consensus 197 ~g~~~~~~~~~-~~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~ 260 (267)
T 1npe_A 197 AQPGRRKVLEG-LQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIAL 260 (267)
T ss_dssp TEEEEEEEEEC-CCSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEEC
T ss_pred CCCceEEEecC-CCCceEEEEe--CCEEEEEECCCCeEEEEeCCCCCceEEEccccccccceeeecC
Confidence 85443333332 2334566664 45565555 56899999999999988886443 2467777776
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=2.4e-08 Score=114.31 Aligned_cols=272 Identities=12% Similarity=0.085 Sum_probs=173.2
Q ss_pred CCEEEEEeC-CCeEEEEeC-CCCceEEEEeccCCC-----------EEEEEEcCCCCE----EEEEeCCCcEEEEeCCCC
Q 005096 156 GRRLITGSQ-SGEFTLWNG-QSFNFEMILQAHDHA-----------IRSMVWSHNDNW----MVSGDDGGAIKYWQNNMN 218 (715)
Q Consensus 156 g~~Latgs~-dg~I~Iwd~-~~~~~~~~l~~h~~~-----------V~~l~~spdg~~----L~tgs~dg~I~iwd~~~~ 218 (715)
+..|++++. ++.|+-+|. ++++.+-.+...... ...+++++.+.. |++++.|+.|..+|.+++
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG 141 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG 141 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence 446777777 888999999 899888776543211 123455333333 788889999999999999
Q ss_pred ceeeeecCCCC----CeEE-EEEecCCCEEEEEE------CCCcEEEEECCCCeeEEEecccCCc---------------
Q 005096 219 NVKANKSAHKE----SVRD-LSFCRTDLKFCSCS------DDTTVKVWDFARCQEERSLTGHGWD--------------- 272 (715)
Q Consensus 219 ~~~~~~~~h~~----~I~~-l~~spd~~~Las~s------~Dg~V~iwdl~~~~~~~~l~~~~~~--------------- 272 (715)
+.+........ .+.+ ..+ .++ .|++++ .++.|+.+|.++++.+-.+......
T Consensus 142 ~~~W~~~~~~~~~~~~~~ssP~v-~~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~ 219 (599)
T 1w6s_A 142 ETVWKVENSDIKVGSTLTIAPYV-VKD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPH 219 (599)
T ss_dssp CEEEEEECCCGGGTCBCCSCCEE-ETT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGG
T ss_pred CEEEeecCCCCCccceeecCCEE-ECC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccccccccccccccc
Confidence 88766543220 1221 112 144 455554 3799999999999988766532211
Q ss_pred ----------------------e-EEEEEcCCCCEEEEEeCC----------------CcEEEEECCCCceeEEeccCCC
Q 005096 273 ----------------------V-KSVDWHPTKSLLVSGGKD----------------SLVKLWDAKSGRELCSFHGHKN 313 (715)
Q Consensus 273 ----------------------I-~si~~spdg~~L~sgs~D----------------g~I~iwDl~s~~~~~~~~~~~~ 313 (715)
+ ..++++++..+|+.+..+ +.|..+|.++++.+..+.....
T Consensus 220 ~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~ 299 (599)
T 1w6s_A 220 YGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPH 299 (599)
T ss_dssp GCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTT
T ss_pred ccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCC
Confidence 0 135666777788877765 3799999999999887754321
Q ss_pred ---------ceEEEEEc-CCC---CEEEEEECCCeEEEEECCCCeEEEEeecCC-------------CCe----------
Q 005096 314 ---------MVLCVKWN-QNG---NWVLTASKDQIIKLYDIRAMKELESFRGHR-------------KDV---------- 357 (715)
Q Consensus 314 ---------~I~sl~~s-pdg---~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~-------------~~V---------- 357 (715)
...-+... .+| +.|+.++.+|.|+++|.++++.+..+.... ..+
T Consensus 300 d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~ 379 (599)
T 1w6s_A 300 DEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMD 379 (599)
T ss_dssp CSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTT
T ss_pred ccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCCC
Confidence 11112222 467 467778899999999999999987765221 001
Q ss_pred ----------------EEEEEccCCCCEEEEE---------------------------------e------CCCcEEEE
Q 005096 358 ----------------TALAWHPFHEEYFVSG---------------------------------S------LDGSIFHW 382 (715)
Q Consensus 358 ----------------~~l~~sp~~~~~l~sg---------------------------------s------~DG~I~iw 382 (715)
..++++|+ ..++++. + .+|.|..|
T Consensus 380 ~~~~~~~P~~~Gg~~w~~~a~dp~-~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~ 458 (599)
T 1w6s_A 380 HLAKDICPSAMGYHNQGHDSYDPK-RELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAY 458 (599)
T ss_dssp CCEEEESSCTTCSSCSCBCEEETT-TTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEE
T ss_pred CCccEeccCcccccCCCCccCCCC-CCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEE
Confidence 13455552 3333221 1 34788899
Q ss_pred EcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCCCCC
Q 005096 383 LVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGD 432 (715)
Q Consensus 383 d~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~~ 432 (715)
|+.+++.+.+..... .+..-.+...+.+|++++.||.|+.||.+..+.
T Consensus 459 D~~tG~~~W~~~~~~--~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~ 506 (599)
T 1w6s_A 459 NAITGDYKWEKMERF--AVWGGTMATAGDLVFYGTLDGYLKARDSDTGDL 506 (599)
T ss_dssp CTTTCCEEEEEEESS--CCCSBCEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred ECCCCCEEeEecCCC--CccCcceEecCCEEEEECCCCeEEEEECCCCCE
Confidence 998888776664321 222111223466788899999999999976443
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=2.5e-08 Score=101.88 Aligned_cols=204 Identities=13% Similarity=0.074 Sum_probs=144.2
Q ss_pred eEEEEeccCC--CEEEEEEcCCCCEEEEEeC--CCcEEEEeCCCCceeeeecCCCC-CeEEEEEecCCCEEEEEE-CCCc
Q 005096 178 FEMILQAHDH--AIRSMVWSHNDNWMVSGDD--GGAIKYWQNNMNNVKANKSAHKE-SVRDLSFCRTDLKFCSCS-DDTT 251 (715)
Q Consensus 178 ~~~~l~~h~~--~V~~l~~spdg~~L~tgs~--dg~I~iwd~~~~~~~~~~~~h~~-~I~~l~~spd~~~Las~s-~Dg~ 251 (715)
.+.++. |.. ....++|++|+.++++.+. ++.|.++|+.+++.+..+..... ....+++. ++.|+.++ .++.
T Consensus 11 vv~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~ 87 (266)
T 2iwa_A 11 VLNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNI 87 (266)
T ss_dssp EEEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSE
T ss_pred EEEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCE
Confidence 445553 443 3689999988644444443 58999999999998887643222 23345554 55555555 5789
Q ss_pred EEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCC-----CceEEEEEcCCCCE
Q 005096 252 VKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHK-----NMVLCVKWNQNGNW 326 (715)
Q Consensus 252 V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~-----~~I~sl~~spdg~~ 326 (715)
|.++|..+.+.+..+......-.. +++|++.|+++..++.|.++|.++.+.+..+.-.. ..++.+.|. ++..
T Consensus 88 v~viD~~t~~v~~~i~~g~~~g~g--lt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~l 164 (266)
T 2iwa_A 88 GFIYDRRTLSNIKNFTHQMKDGWG--LATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEV 164 (266)
T ss_dssp EEEEETTTTEEEEEEECCSSSCCE--EEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEE
T ss_pred EEEEECCCCcEEEEEECCCCCeEE--EEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEE
Confidence 999999999998888633122223 44467777777778999999999988887775321 236788888 6754
Q ss_pred EEEEECCCeEEEEECCCCeEEEEeecC-------------CCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCC
Q 005096 327 VLTASKDQIIKLYDIRAMKELESFRGH-------------RKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHE 387 (715)
Q Consensus 327 Lasgs~dg~I~iwDl~t~~~~~~~~~h-------------~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~ 387 (715)
++....++.|.+.|..+++.+..+... ....+.|+|+++++++++++...+.|.+.++...
T Consensus 165 yvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 165 WANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp EEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred EEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 444446789999999999998888642 1356899999977778888888889988887543
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=7.4e-07 Score=105.85 Aligned_cols=273 Identities=13% Similarity=0.103 Sum_probs=180.5
Q ss_pred CccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEec-------cCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 005096 144 RCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQA-------HDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNN 216 (715)
Q Consensus 144 ~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~-------h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~ 216 (715)
...|.++....+|. |.+|+.+| |.+||..+.+....... ....|.++....+++ |.+|+.++-|.+|+..
T Consensus 262 ~~~i~~i~~d~~g~-lWigt~~G-l~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~ 338 (795)
T 4a2l_A 262 SNYIRSLAMDSQNR-LWIGTFND-LNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPI 338 (795)
T ss_dssp CSBEEEEEECTTSC-EEEEESSC-EEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGG
T ss_pred CCeEEEEEEcCCCC-EEEEeCCh-hheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCC
Confidence 45799999998887 44555555 89999887765543321 235799999988876 4556777778888866
Q ss_pred CCceeeeec------CCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecc--------cCCceEEEEEcCCC
Q 005096 217 MNNVKANKS------AHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTG--------HGWDVKSVDWHPTK 282 (715)
Q Consensus 217 ~~~~~~~~~------~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~--------~~~~I~si~~spdg 282 (715)
+........ .....|.++....+++ |.+|+.++-|.+||..+.+....... ....|.+++.+.++
T Consensus 339 ~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g 417 (795)
T 4a2l_A 339 RNRFKNIRNIPYKNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKK 417 (795)
T ss_dssp GGSSEEECCCTTSSSCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTT
T ss_pred cccceEEcCCCCCCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCC
Confidence 554332211 1245689998887776 55577777799999876654332211 23578999998888
Q ss_pred CEEEEEeCCCcEEEEECCCCceeEEec----cCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEee------c
Q 005096 283 SLLVSGGKDSLVKLWDAKSGRELCSFH----GHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFR------G 352 (715)
Q Consensus 283 ~~L~sgs~Dg~I~iwDl~s~~~~~~~~----~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~------~ 352 (715)
++|.+|+.++-|.+||.++++...... .....|.++....++++.+ |+. +-|.+||..+++...... .
T Consensus 418 ~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwi-gt~-~Gl~~~~~~~~~~~~~~~~~~~~~~ 495 (795)
T 4a2l_A 418 SLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWL-GTL-SALVRFNPEQRSFTTIEKEKDGTPV 495 (795)
T ss_dssp TEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEE-EES-SCEEEEETTTTEEEECCBCTTCCBC
T ss_pred CEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEE-Eec-CceeEEeCCCCeEEEcccccccccc
Confidence 867778887789999998776433221 1345799999988887544 444 458889988765433221 1
Q ss_pred CCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEe------eccCCCEEEEEEcCCCCEEEEEECCCeEEEEe
Q 005096 353 HRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIH------NVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWC 426 (715)
Q Consensus 353 h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~------~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWd 426 (715)
....|.++.... ++.+.+.. . +-|.+||..+... .+. ......|.++....+|.+.++ +.+ -|..||
T Consensus 496 ~~~~i~~i~~d~-~g~lWigt-~-~Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWig-T~~-Gl~~~d 568 (795)
T 4a2l_A 496 VSKQITTLFRDS-HKRLWIGG-E-EGLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVG-TRE-GFYCFN 568 (795)
T ss_dssp CCCCEEEEEECT-TCCEEEEE-S-SCEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEE-ESS-CEEEEE
T ss_pred CCceEEEEEECC-CCCEEEEe-C-CceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEE-eCC-CceeEC
Confidence 235688888876 55555544 4 4588888765543 221 123457999999988886554 444 567777
Q ss_pred cCC
Q 005096 427 RNR 429 (715)
Q Consensus 427 l~~ 429 (715)
.+.
T Consensus 569 ~~~ 571 (795)
T 4a2l_A 569 EKD 571 (795)
T ss_dssp TTT
T ss_pred CCC
Confidence 643
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=99.03 E-value=1e-08 Score=114.98 Aligned_cols=229 Identities=13% Similarity=0.053 Sum_probs=161.2
Q ss_pred CCCEEEEEeC-CCeEEEEeCCCCceEEEEecc-CCCEEEEEE-c-CCCCEEEEEe------------------CCCcEEE
Q 005096 155 TGRRLITGSQ-SGEFTLWNGQSFNFEMILQAH-DHAIRSMVW-S-HNDNWMVSGD------------------DGGAIKY 212 (715)
Q Consensus 155 dg~~Latgs~-dg~I~Iwd~~~~~~~~~l~~h-~~~V~~l~~-s-pdg~~L~tgs------------------~dg~I~i 212 (715)
||++|+++.. ++.|.+.|+++.++.+++..- ......+++ + ++++++++++ .++.|.+
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtv 179 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA 179 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEE
T ss_pred CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEE
Confidence 8888887766 457999999999988877543 356889998 5 8999998884 3457999
Q ss_pred EeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCC--------------------------------------cEEE
Q 005096 213 WQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDT--------------------------------------TVKV 254 (715)
Q Consensus 213 wd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg--------------------------------------~V~i 254 (715)
+|.++.+....+.... .-..++++++++++++++.+. .|.|
T Consensus 180 ID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~V 258 (595)
T 1fwx_A 180 VDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKV 258 (595)
T ss_dssp EETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEE
T ss_pred EECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEE
Confidence 9999988877775433 456788999999998888653 3666
Q ss_pred EECCC--Cee-EEEecccCCceEEEEEcCCCCEEEEEe-CCCcEEEEECCCCc------------eeEEeccCCCceEEE
Q 005096 255 WDFAR--CQE-ERSLTGHGWDVKSVDWHPTKSLLVSGG-KDSLVKLWDAKSGR------------ELCSFHGHKNMVLCV 318 (715)
Q Consensus 255 wdl~~--~~~-~~~l~~~~~~I~si~~spdg~~L~sgs-~Dg~I~iwDl~s~~------------~~~~~~~~~~~I~sl 318 (715)
.|..+ ++. +..+. ......++.++|||+++++++ .+.+|.++|+++.+ .+..+. -......+
T Consensus 259 ID~~~~~~~~~~~~Ip-vg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-vG~gP~h~ 336 (595)
T 1fwx_A 259 VDGRKEASSLFTRYIP-IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLGPLHT 336 (595)
T ss_dssp EECSGGGCCSSEEEEE-EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-CCSCEEEE
T ss_pred EeCcccCCceeEEEEe-cCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC-CCCCcceE
Confidence 66665 333 33333 223566899999999877765 57889999998653 222232 34557899
Q ss_pred EEcCCCCEEEEEECCCeEEEEECCC----------CeEEEEeecCCCCe-----EEEEEccCCCCEEEEEeCC--CcE--
Q 005096 319 KWNQNGNWVLTASKDQIIKLYDIRA----------MKELESFRGHRKDV-----TALAWHPFHEEYFVSGSLD--GSI-- 379 (715)
Q Consensus 319 ~~spdg~~Lasgs~dg~I~iwDl~t----------~~~~~~~~~h~~~V-----~~l~~sp~~~~~l~sgs~D--G~I-- 379 (715)
+|+++|...++...|+.|.+||+.+ .+.+.++..|-..- ..+.+++ ++++|++...- .++
T Consensus 337 aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~-DGk~l~~~Nk~skdr~~~ 415 (595)
T 1fwx_A 337 AFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDA-TNDWLVCLSKFSKDRFLN 415 (595)
T ss_dssp EECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTC-CSSEEEEEESCCTTSSCC
T ss_pred EECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCC-CCCEEEEcCCCCcccccc
Confidence 9999994444566899999999977 55677776554321 1224466 77887777532 233
Q ss_pred ---------EEEEcCCC
Q 005096 380 ---------FHWLVGHE 387 (715)
Q Consensus 380 ---------~iwd~~~~ 387 (715)
.++|+..+
T Consensus 416 ~gp~~~~~~ql~dis~~ 432 (595)
T 1fwx_A 416 VGPLKPENDQLIDISGD 432 (595)
T ss_dssp CCSSCCEEEEEEECSSS
T ss_pred CCCCCCCcceEEEcCCC
Confidence 77888443
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=99.03 E-value=1.7e-07 Score=107.18 Aligned_cols=255 Identities=10% Similarity=0.054 Sum_probs=162.7
Q ss_pred CCEEEEEeCCCeEEEEeCCCCceEEEEeccCC----CEE-EEEEcC---CCC-EEEEEe------CCCcEEEEeCCCCce
Q 005096 156 GRRLITGSQSGEFTLWNGQSFNFEMILQAHDH----AIR-SMVWSH---NDN-WMVSGD------DGGAIKYWQNNMNNV 220 (715)
Q Consensus 156 g~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~----~V~-~l~~sp---dg~-~L~tgs------~dg~I~iwd~~~~~~ 220 (715)
+..|++++.|+.|+.+|.++++.+-....... .+. ...+.. +++ .|++++ .++.|..+|.+++++
T Consensus 117 ~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~ 196 (582)
T 1flg_A 117 GDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEE 196 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCE
Confidence 55788899999999999999998877654321 111 111111 233 566654 378999999999887
Q ss_pred eeeecCCCCCe-----------------------------------------EEEEEecCCCEEEEEEC-----------
Q 005096 221 KANKSAHKESV-----------------------------------------RDLSFCRTDLKFCSCSD----------- 248 (715)
Q Consensus 221 ~~~~~~h~~~I-----------------------------------------~~l~~spd~~~Las~s~----------- 248 (715)
+.........+ ..+++.++..+|++++.
T Consensus 197 ~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~ 276 (582)
T 1flg_A 197 IWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWART 276 (582)
T ss_dssp EEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGS
T ss_pred EeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccc
Confidence 76543211000 12455666677777663
Q ss_pred ---------C----CcEEEEECCCCeeEEEecc--cCC----ceE---EEEEc-CCCC---EEEEEeCCCcEEEEECCCC
Q 005096 249 ---------D----TTVKVWDFARCQEERSLTG--HGW----DVK---SVDWH-PTKS---LLVSGGKDSLVKLWDAKSG 302 (715)
Q Consensus 249 ---------D----g~V~iwdl~~~~~~~~l~~--~~~----~I~---si~~s-pdg~---~L~sgs~Dg~I~iwDl~s~ 302 (715)
| +.|..+|.++++.+-.+.. |.. .+. -+... .+|+ .|+.++.+|.|+++|.+++
T Consensus 277 ~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG 356 (582)
T 1flg_A 277 AKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNG 356 (582)
T ss_dssp CTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTC
T ss_pred cCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCC
Confidence 2 5899999999998877653 210 111 12221 4564 7888999999999999999
Q ss_pred ceeEEeccCC--Cce-------------------------------------------EEEEEcCCCCEEEEEE------
Q 005096 303 RELCSFHGHK--NMV-------------------------------------------LCVKWNQNGNWVLTAS------ 331 (715)
Q Consensus 303 ~~~~~~~~~~--~~I-------------------------------------------~sl~~spdg~~Lasgs------ 331 (715)
+.+..+.... ... ..++++++..+|++..
T Consensus 357 ~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~ 436 (582)
T 1flg_A 357 KLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKED 436 (582)
T ss_dssp CEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEE
T ss_pred CEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhccee
Confidence 9887654321 000 1245566555555432
Q ss_pred ---------------------------CCCeEEEEECCCCeEEEEeecCCCCeE-EEEEccCCCCEEEEEeCCCcEEEEE
Q 005096 332 ---------------------------KDQIIKLYDIRAMKELESFRGHRKDVT-ALAWHPFHEEYFVSGSLDGSIFHWL 383 (715)
Q Consensus 332 ---------------------------~dg~I~iwDl~t~~~~~~~~~h~~~V~-~l~~sp~~~~~l~sgs~DG~I~iwd 383 (715)
.+|.|..||+++++.+.++........ .+.. .+.++++++.||.|+.||
T Consensus 437 ~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~t---agglvf~g~~dg~l~A~D 513 (582)
T 1flg_A 437 YWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLPLWAGVLAT---AGNLVFTGTGDGYFKAFD 513 (582)
T ss_dssp EEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESSCCCSCCEEE---TTTEEEEECTTSEEEEEE
T ss_pred eecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCCCCcccceEe---CCCEEEEECCCCcEEEEE
Confidence 257899999999999888764332211 1222 466777899999999999
Q ss_pred cCCCCceEEEeeccCCCEEEEEEcCCCCEE
Q 005096 384 VGHETPQVEIHNVHDNTVWDLAWHPIGYLL 413 (715)
Q Consensus 384 ~~~~~~~~~~~~~h~~~V~~l~~spdg~~L 413 (715)
.++++.+.++.........-+.|..+|+..
T Consensus 514 ~~tG~~lW~~~~~~g~~a~P~~y~~~G~qY 543 (582)
T 1flg_A 514 AKSGKELWKFQTGSGIVSPPITWEQDGEQY 543 (582)
T ss_dssp TTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred CCCCCEEEEecCCCCcccCceEEEECCEEE
Confidence 999998887765332222235566677533
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=8.2e-08 Score=101.00 Aligned_cols=235 Identities=11% Similarity=0.038 Sum_probs=147.8
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeecC-------------------CCCCeEEEEEecCCCEEEEEEC
Q 005096 188 AIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSA-------------------HKESVRDLSFCRTDLKFCSCSD 248 (715)
Q Consensus 188 ~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~~-------------------h~~~I~~l~~spd~~~Las~s~ 248 (715)
...+++|++++++|+++..++.|..|+..++........ ....+..|++.+++..|+++..
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~ 99 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDC 99 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEET
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEEC
Confidence 455788998988788888899999998876544322110 1135788999874445666666
Q ss_pred CCcEEEEECCCCeeEEEecc-----cCCceEEEEEcC-CCCEEEEEeC-----------------CCcEEEEECCCCcee
Q 005096 249 DTTVKVWDFARCQEERSLTG-----HGWDVKSVDWHP-TKSLLVSGGK-----------------DSLVKLWDAKSGREL 305 (715)
Q Consensus 249 Dg~V~iwdl~~~~~~~~l~~-----~~~~I~si~~sp-dg~~L~sgs~-----------------Dg~I~iwDl~s~~~~ 305 (715)
.+.|.++|..+++. ..+.. .......+++++ +|+++++... ++.|..||..+++..
T Consensus 100 ~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~ 178 (322)
T 2fp8_A 100 YYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETT 178 (322)
T ss_dssp TTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEE
T ss_pred CCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEE
Confidence 66688888765432 22211 123468899999 8886665432 367888998766543
Q ss_pred EEeccCCCceEEEEEcCCCCEEEEEE-CCCeEEEEECCCCe--EEEEeecCCCCeEEEEEccCCCCEEEEEeC-------
Q 005096 306 CSFHGHKNMVLCVKWNQNGNWVLTAS-KDQIIKLYDIRAMK--ELESFRGHRKDVTALAWHPFHEEYFVSGSL------- 375 (715)
Q Consensus 306 ~~~~~~~~~I~sl~~spdg~~Lasgs-~dg~I~iwDl~t~~--~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~------- 375 (715)
.... .......|+|++++++|+++. .++.|.+||+.... ....+..... ...+++.+ +++++++...
T Consensus 179 ~~~~-~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~-~G~l~va~~~~~~~~~~ 255 (322)
T 2fp8_A 179 LLLK-ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNA-DGHFWVSSSEELDGNMH 255 (322)
T ss_dssp EEEE-EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECT-TSCEEEEEEEETTSSTT
T ss_pred Eecc-CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECC-CCCEEEEecCccccccc
Confidence 3222 223456799999999777664 56899999987421 1112211223 78899988 5666666544
Q ss_pred ---CCcEEEEEcCCCCceEEEeecc----CCCEEEEEEcCCCCEEEEEECCCeEEEEecCC
Q 005096 376 ---DGSIFHWLVGHETPQVEIHNVH----DNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNR 429 (715)
Q Consensus 376 ---DG~I~iwd~~~~~~~~~~~~~h----~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~ 429 (715)
.+.|.++|.+ ......+... ...++++++. ++.++++...++.|.+++++.
T Consensus 256 ~~~~~~v~~~d~~--G~~~~~~~~~~g~~~~~~~~~~~~-~g~L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 256 GRVDPKGIKFDEF--GNILEVIPLPPPFAGEHFEQIQEH-DGLLYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp SCEEEEEEEECTT--SCEEEEEECCTTTTTSCCCEEEEE-TTEEEEECSSCSEEEEEEC--
T ss_pred CCCccEEEEECCC--CCEEEEEECCCCCccccceEEEEe-CCEEEEeecCCCceEEEeccc
Confidence 3567777653 3333333222 2356677763 566666666788999998754
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=99.01 E-value=1.2e-07 Score=108.48 Aligned_cols=273 Identities=11% Similarity=0.042 Sum_probs=171.2
Q ss_pred CCEEEEEeCCCeEEEEeCCCCceEEEEeccCCC---------EEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeecC
Q 005096 156 GRRLITGSQSGEFTLWNGQSFNFEMILQAHDHA---------IRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSA 226 (715)
Q Consensus 156 g~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~---------V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~~ 226 (715)
+..|++++.++.|+.+|.++++.+-.+...... ...+++ .+..|++++.|+.|.-+|.++++.+.....
T Consensus 68 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~--~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~ 145 (582)
T 1flg_A 68 DGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI--YGDKVFFGTLDASVVALNKNTGKVVWKKKF 145 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE--ETTEEEEEETTTEEEEEESSSCCEEEEEEC
T ss_pred CCEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE--ECCEEEEEeCCCEEEEEECCCCCEEeeecC
Confidence 345666666455999999999988777644321 012222 356788888999999999999988766543
Q ss_pred CCC----CeE-EEEEecC---CC-EEEEEE------CCCcEEEEECCCCeeEEEecccCCc-------------------
Q 005096 227 HKE----SVR-DLSFCRT---DL-KFCSCS------DDTTVKVWDFARCQEERSLTGHGWD------------------- 272 (715)
Q Consensus 227 h~~----~I~-~l~~spd---~~-~Las~s------~Dg~V~iwdl~~~~~~~~l~~~~~~------------------- 272 (715)
... .+. ...+..+ ++ .|++++ .++.|+.+|.++++.+-........
T Consensus 146 ~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~ 225 (582)
T 1flg_A 146 ADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPS 225 (582)
T ss_dssp SCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTT
T ss_pred CCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCccccccccccccc
Confidence 321 111 1112212 23 555554 3789999999998887654321100
Q ss_pred ----------------------eEEEEEcCCCCEEEEEeC--------------------C----CcEEEEECCCCceeE
Q 005096 273 ----------------------VKSVDWHPTKSLLVSGGK--------------------D----SLVKLWDAKSGRELC 306 (715)
Q Consensus 273 ----------------------I~si~~spdg~~L~sgs~--------------------D----g~I~iwDl~s~~~~~ 306 (715)
-..++++++..+|+++.. | +.|..+|.++++.+.
T Consensus 226 w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W 305 (582)
T 1flg_A 226 WPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKW 305 (582)
T ss_dssp SCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEE
T ss_pred CCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEE
Confidence 013566677777777663 2 579999999999998
Q ss_pred Eecc--CCC-------ceEEEEEc-CCCC---EEEEEECCCeEEEEECCCCeEEEEeecCCC--Ce--------------
Q 005096 307 SFHG--HKN-------MVLCVKWN-QNGN---WVLTASKDQIIKLYDIRAMKELESFRGHRK--DV-------------- 357 (715)
Q Consensus 307 ~~~~--~~~-------~I~sl~~s-pdg~---~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~--~V-------------- 357 (715)
.+.. |.. ...-+... .+|+ .|+.++.+|.|+++|.++++.+..+..... ..
T Consensus 306 ~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~ 385 (582)
T 1flg_A 306 FYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVERE 385 (582)
T ss_dssp EEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECT
T ss_pred EEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeEcc
Confidence 8753 211 11112221 4664 788899999999999999999877654320 00
Q ss_pred -----------------------------EEEEEccCCCCEEEEEe--------------------------------CC
Q 005096 358 -----------------------------TALAWHPFHEEYFVSGS--------------------------------LD 376 (715)
Q Consensus 358 -----------------------------~~l~~sp~~~~~l~sgs--------------------------------~D 376 (715)
..+++++..+.+++... .+
T Consensus 386 ~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~ 465 (582)
T 1flg_A 386 GQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHV 465 (582)
T ss_dssp TCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCS
T ss_pred ccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCCc
Confidence 12455663344433221 25
Q ss_pred CcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCCCCC
Q 005096 377 GSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGD 432 (715)
Q Consensus 377 G~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~~ 432 (715)
|.|..||..+++.+.+..... .+..-.....+.+|++++.||.|+.||.+..+.
T Consensus 466 G~l~A~D~~tG~~~W~~~~~~--~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~ 519 (582)
T 1flg_A 466 GSLRAMDPVSGKVVWEHKEHL--PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKE 519 (582)
T ss_dssp EEEEEECTTTCCEEEEEEESS--CCCSCCEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred ceEEEEECCCCCEEEEecCCC--CCcccceEeCCCEEEEECCCCcEEEEECCCCCE
Confidence 789999999988777665422 222212222466788899999999999865443
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=99.00 E-value=3.3e-08 Score=99.95 Aligned_cols=189 Identities=14% Similarity=0.165 Sum_probs=132.2
Q ss_pred eEEEEeccCCC--EEEEEEcCCCCEEEEEeCCC--cEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEE-CCCcE
Q 005096 178 FEMILQAHDHA--IRSMVWSHNDNWMVSGDDGG--AIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCS-DDTTV 252 (715)
Q Consensus 178 ~~~~l~~h~~~--V~~l~~spdg~~L~tgs~dg--~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s-~Dg~V 252 (715)
.+.++ .|+.. ...|.|+ ++.++++++.+| .|+++|+++++.+..+... .......+..+++.|+... .++.+
T Consensus 33 vv~~~-phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~-~~~FgeGit~~g~~ly~ltw~~~~v 109 (262)
T 3nol_A 33 IVHSY-PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELG-KRYFGEGISDWKDKIVGLTWKNGLG 109 (262)
T ss_dssp EEEEE-ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECC-TTCCEEEEEEETTEEEEEESSSSEE
T ss_pred EEEEe-cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecC-CccceeEEEEeCCEEEEEEeeCCEE
Confidence 44555 34433 4788888 666666666665 8999999999988877543 3343333333455666555 48899
Q ss_pred EEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCC-----CceEEEEEcCCCCEE
Q 005096 253 KVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHK-----NMVLCVKWNQNGNWV 327 (715)
Q Consensus 253 ~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~-----~~I~sl~~spdg~~L 327 (715)
.+||.++.+.+.++.... .-..++ .|++.|+.+..++.|.++|.++.+.+.++.... ..++.+.|. +|++.
T Consensus 110 ~v~D~~t~~~~~ti~~~~-eG~glt--~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~ly 185 (262)
T 3nol_A 110 FVWNIRNLRQVRSFNYDG-EGWGLT--HNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIF 185 (262)
T ss_dssp EEEETTTCCEEEEEECSS-CCCCEE--ECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEE
T ss_pred EEEECccCcEEEEEECCC-CceEEe--cCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEE
Confidence 999999999998887533 223444 457777777667889999999998887765321 335567776 67655
Q ss_pred EEEECCCeEEEEECCCCeEEEEeecC------------CCCeEEEEEccCCCCEEEEE
Q 005096 328 LTASKDQIIKLYDIRAMKELESFRGH------------RKDVTALAWHPFHEEYFVSG 373 (715)
Q Consensus 328 asgs~dg~I~iwDl~t~~~~~~~~~h------------~~~V~~l~~sp~~~~~l~sg 373 (715)
+..-.++.|.+.|.++++.+..+... ....+.|+|+++.++++++|
T Consensus 186 an~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG 243 (262)
T 3nol_A 186 ANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG 243 (262)
T ss_dssp EEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred EEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence 55546889999999999998887642 23568999999656666655
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.97 E-value=1.1e-07 Score=96.19 Aligned_cols=182 Identities=8% Similarity=0.077 Sum_probs=131.6
Q ss_pred CccEEEEEEcCCCCEEEEEeCCC--eEEEEeCCCCceEEEEeccCCC-EEEEEEcCCCCEEE-EEeCCCcEEEEeCCCCc
Q 005096 144 RCSINRVLWTPTGRRLITGSQSG--EFTLWNGQSFNFEMILQAHDHA-IRSMVWSHNDNWMV-SGDDGGAIKYWQNNMNN 219 (715)
Q Consensus 144 ~~~I~~l~~spdg~~Latgs~dg--~I~Iwd~~~~~~~~~l~~h~~~-V~~l~~spdg~~L~-tgs~dg~I~iwd~~~~~ 219 (715)
+.-...|.|+ ++.++++.+.+| .|+++|+++++.+..+...... -..+++ +++.|+ +.-.++.+.+||.++.+
T Consensus 42 ~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~--~g~~ly~ltw~~~~v~v~D~~t~~ 118 (262)
T 3nol_A 42 KAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISD--WKDKIVGLTWKNGLGFVWNIRNLR 118 (262)
T ss_dssp TCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEE--ETTEEEEEESSSSEEEEEETTTCC
T ss_pred CcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEE--eCCEEEEEEeeCCEEEEEECccCc
Confidence 3445788898 676666666665 8999999999999888754322 123444 344554 44568999999999999
Q ss_pred eeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccC-----CceEEEEEcCCCCEEEEEeCCCcE
Q 005096 220 VKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHG-----WDVKSVDWHPTKSLLVSGGKDSLV 294 (715)
Q Consensus 220 ~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~-----~~I~si~~spdg~~L~sgs~Dg~I 294 (715)
.+.++.... ....++.|++.|+.+..++.|.++|.++.+.+..+.... ..++.+.|. +|++++..-.++.|
T Consensus 119 ~~~ti~~~~---eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I 194 (262)
T 3nol_A 119 QVRSFNYDG---EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNKI 194 (262)
T ss_dssp EEEEEECSS---CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEE
T ss_pred EEEEEECCC---CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccCCeE
Confidence 888876533 223444577777777778889999999988888765421 335567887 67666555568899
Q ss_pred EEEECCCCceeEEeccC------------CCceEEEEEcCCCCEEEEEEC
Q 005096 295 KLWDAKSGRELCSFHGH------------KNMVLCVKWNQNGNWVLTASK 332 (715)
Q Consensus 295 ~iwDl~s~~~~~~~~~~------------~~~I~sl~~spdg~~Lasgs~ 332 (715)
.+.|.++++.+..+... ....+.|+|+++++.|++.+.
T Consensus 195 ~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 195 VRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp EEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred EEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 99999999998877531 135689999999888887774
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.96 E-value=6.9e-08 Score=97.57 Aligned_cols=177 Identities=10% Similarity=0.096 Sum_probs=129.4
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEE--EEEecCCCEEEE-EECCCcEEEEECCCCeeEEE
Q 005096 189 IRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRD--LSFCRTDLKFCS-CSDDTTVKVWDFARCQEERS 265 (715)
Q Consensus 189 V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~--l~~spd~~~Las-~s~Dg~V~iwdl~~~~~~~~ 265 (715)
...|.|+ ++.++++.+.+|.|+++|+++++.+..+ ....... +++ +++.|+. .-.++.+.+||.++.+.+.+
T Consensus 57 tqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~--l~~~~FgeGit~--~g~~Ly~ltw~~~~v~V~D~~Tl~~~~t 131 (268)
T 3nok_A 57 TQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME--RLGNIFAEGLAS--DGERLYQLTWTEGLLFTWSGMPPQRERT 131 (268)
T ss_dssp EEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE--ECTTCCEEEEEE--CSSCEEEEESSSCEEEEEETTTTEEEEE
T ss_pred cceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE--CCCCcceeEEEE--eCCEEEEEEccCCEEEEEECCcCcEEEE
Confidence 5678887 4566677888899999999999988777 3334333 444 4444444 44588999999999999998
Q ss_pred ecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCC-----CceEEEEEcCCCCEEEEEECCCeEEEEE
Q 005096 266 LTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHK-----NMVLCVKWNQNGNWVLTASKDQIIKLYD 340 (715)
Q Consensus 266 l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~-----~~I~sl~~spdg~~Lasgs~dg~I~iwD 340 (715)
+.... .-..+++ |++.|+.+..++.|.++|.++.+.+.++.-.. ..++.+.|. +|++++....+..|.+.|
T Consensus 132 i~~~~-eGwGLt~--Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vID 207 (268)
T 3nok_A 132 TRYSG-EGWGLCY--WNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEID 207 (268)
T ss_dssp EECSS-CCCCEEE--ETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEEC
T ss_pred EeCCC-ceeEEec--CCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEe
Confidence 87533 2244554 57888888778999999999998888775322 245677877 776554444688999999
Q ss_pred CCCCeEEEEeecC-------------CCCeEEEEEccCCCCEEEEEe
Q 005096 341 IRAMKELESFRGH-------------RKDVTALAWHPFHEEYFVSGS 374 (715)
Q Consensus 341 l~t~~~~~~~~~h-------------~~~V~~l~~sp~~~~~l~sgs 374 (715)
.++++.+..+... ....+.|++++..+++++||-
T Consensus 208 p~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 208 PATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp TTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred CCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 9999998887632 235789999997777777763
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=98.94 E-value=6.6e-08 Score=114.15 Aligned_cols=190 Identities=11% Similarity=0.077 Sum_probs=116.6
Q ss_pred CEEEEEEc-CCCCEEEEEe-CCC----cEEEEeCCCC-ceeeeecCCCCCeEEEEEecCCCEEEEEECC-----CcEEEE
Q 005096 188 AIRSMVWS-HNDNWMVSGD-DGG----AIKYWQNNMN-NVKANKSAHKESVRDLSFCRTDLKFCSCSDD-----TTVKVW 255 (715)
Q Consensus 188 ~V~~l~~s-pdg~~L~tgs-~dg----~I~iwd~~~~-~~~~~~~~h~~~I~~l~~spd~~~Las~s~D-----g~V~iw 255 (715)
.+...+|| +||++|+.+. .+| .|+++|++++ +.+.. ........++|++|++.|+....| ..|+++
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~--~~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~ 252 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD--KVSGTNGEIVWGPDHTSLFYVTKDETLRENKVWRH 252 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC--CEEEECSCCEECSSTTEEEEEEECTTCCEEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc--cccCceeeEEEecCCCEEEEEEECCCCCCCEEEEE
Confidence 67889999 9999887543 333 4999999988 63211 011124568999999888777665 368888
Q ss_pred ECCCCee--EEEec-ccCCceEEEEEcCCCCEEEEEeC---CCcEEEEECCCCc-ee--EEec-cCCCceEEEEEcCCCC
Q 005096 256 DFARCQE--ERSLT-GHGWDVKSVDWHPTKSLLVSGGK---DSLVKLWDAKSGR-EL--CSFH-GHKNMVLCVKWNQNGN 325 (715)
Q Consensus 256 dl~~~~~--~~~l~-~~~~~I~si~~spdg~~L~sgs~---Dg~I~iwDl~s~~-~~--~~~~-~~~~~I~sl~~spdg~ 325 (715)
++.+... ...+. ........+.|++|+++|+..+. ...|+++|+.++. .. ..+. .......++.|+. ++
T Consensus 253 ~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~-g~ 331 (751)
T 2xe4_A 253 VMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHG-TS 331 (751)
T ss_dssp ETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEET-TT
T ss_pred ECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeee-CC
Confidence 9876532 22322 22334668899999998887653 3468889998752 22 3333 2344456666654 55
Q ss_pred EEEEEE-CC----CeEEEEECCCCeEEEE-eecCCC--CeEEEEEccCCCCEEEEEeCCCcEEEE
Q 005096 326 WVLTAS-KD----QIIKLYDIRAMKELES-FRGHRK--DVTALAWHPFHEEYFVSGSLDGSIFHW 382 (715)
Q Consensus 326 ~Lasgs-~d----g~I~iwDl~t~~~~~~-~~~h~~--~V~~l~~sp~~~~~l~sgs~DG~I~iw 382 (715)
.|+..+ .+ ..|.++|+.+...... +..+.. .+..+.+. ++.++++...++..+||
T Consensus 332 ~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~--~~~lv~~~~~~g~~~l~ 394 (751)
T 2xe4_A 332 HLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR--SNYLVVAGRRAGLTRIW 394 (751)
T ss_dssp EEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC--SSEEEEEEEETTEEEEE
T ss_pred EEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE--CCEEEEEEEeCCEEEEE
Confidence 555444 33 3677778765322222 223333 34555554 56677778888865544
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=98.91 E-value=1.4e-06 Score=90.96 Aligned_cols=226 Identities=11% Similarity=0.058 Sum_probs=141.2
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCC--cEEEEECCCCeeEE
Q 005096 187 HAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDT--TVKVWDFARCQEER 264 (715)
Q Consensus 187 ~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg--~V~iwdl~~~~~~~ 264 (715)
.....++|+++++++++...++.|..||.+.. ....+ ........+++.++++++++..... .|..+|..+++...
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~-~~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~ 109 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHA-TVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVET 109 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEE-ECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEE-eCCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEE
Confidence 46778999999987777667899999987754 32222 2345688999999998666554432 47777777766543
Q ss_pred Eecc-cCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCc-eeEEec---------cCCCceEEEEEcCCCCEEEEEE-C
Q 005096 265 SLTG-HGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGR-ELCSFH---------GHKNMVLCVKWNQNGNWVLTAS-K 332 (715)
Q Consensus 265 ~l~~-~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~-~~~~~~---------~~~~~I~sl~~spdg~~Lasgs-~ 332 (715)
.... .......++...++..+++...++.|+++|..+++ .+.... ..-.....| ++++++|+++. .
T Consensus 110 ~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~ 187 (306)
T 2p4o_A 110 LLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTE 187 (306)
T ss_dssp EEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETT
T ss_pred EEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCC
Confidence 3221 12233455555555445544458899999987643 121111 111234555 77887776665 5
Q ss_pred CCeEEEEECCC-CeE--EEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEE--eeccCCCEEEEEEc
Q 005096 333 DQIIKLYDIRA-MKE--LESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEI--HNVHDNTVWDLAWH 407 (715)
Q Consensus 333 dg~I~iwDl~t-~~~--~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~--~~~h~~~V~~l~~s 407 (715)
.+.|.+||+.. ++. ...+.. ......+++++ +++++++....+.|.++|.+ +. ...+ ........++++|.
T Consensus 188 ~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~-dG~l~va~~~~~~V~~~~~~-G~-~~~~~~~~~~~~~p~~~a~~ 263 (306)
T 2p4o_A 188 KMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDV-EGNLYGATHIYNSVVRIAPD-RS-TTIIAQAEQGVIGSTAVAFG 263 (306)
T ss_dssp TTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBT-TCCEEEECBTTCCEEEECTT-CC-EEEEECGGGTCTTEEEEEEC
T ss_pred CCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECC-CCCEEEEeCCCCeEEEECCC-CC-EEEEeecccccCCceEEEEe
Confidence 67899999874 321 112211 13467788988 67887777778899999875 22 2222 22223568999998
Q ss_pred ---CCCCEEEEEECCC
Q 005096 408 ---PIGYLLCSGSNDH 420 (715)
Q Consensus 408 ---pdg~~L~sgs~Dg 420 (715)
++++.|++++..+
T Consensus 264 g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 264 QTEGDCTAIYVVTNGG 279 (306)
T ss_dssp CSTTTTTEEEEEECTT
T ss_pred cccCCCCEEEEECCCC
Confidence 7877777766543
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.91 E-value=1.4e-06 Score=103.13 Aligned_cols=275 Identities=11% Similarity=0.087 Sum_probs=173.5
Q ss_pred CccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEe--------------ccCCCEEEEEEcCCCCEEEEEeCCCc
Q 005096 144 RCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQ--------------AHDHAIRSMVWSHNDNWMVSGDDGGA 209 (715)
Q Consensus 144 ~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~--------------~h~~~V~~l~~spdg~~L~tgs~dg~ 209 (715)
...|.+|....+|. |.+|+..+-|.++|..+.+...... .....|.++....+++ |.+|+.++-
T Consensus 257 ~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~G 334 (781)
T 3v9f_A 257 SSYIFSIKQLKDNK-LWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGG 334 (781)
T ss_dssp CCCEEEEEECTTSE-EEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSC
T ss_pred CceEEEEEECCCCC-EEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCe
Confidence 45699999988885 6667764558999987765433221 2346799999988776 556776777
Q ss_pred EEEEeCCCCceeeee---------cCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEe---cccCCceEEEE
Q 005096 210 IKYWQNNMNNVKANK---------SAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSL---TGHGWDVKSVD 277 (715)
Q Consensus 210 I~iwd~~~~~~~~~~---------~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l---~~~~~~I~si~ 277 (715)
|..|+.......... ......|.+++...++. |.+|+.++-|.+||..+....... ......|.++.
T Consensus 335 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~ 413 (781)
T 3v9f_A 335 INFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGK-LWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSL 413 (781)
T ss_dssp EEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSC-EEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEE
T ss_pred EEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCC-EEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEE
Confidence 888887765443321 11345688888877766 556666667999997654332211 12346789999
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCCceeEEec---cCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecC-
Q 005096 278 WHPTKSLLVSGGKDSLVKLWDAKSGRELCSFH---GHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGH- 353 (715)
Q Consensus 278 ~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~---~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h- 353 (715)
...+++ |.+|+.++-|.+||.++++.. .+. .....|.++....+++ |.+|+. +-|.+||..+++........
T Consensus 414 ~d~~g~-lWigt~~~Gl~~~~~~~~~~~-~~~~~~~~~~~v~~i~~d~~g~-lwigt~-~Gl~~~~~~~~~~~~~~~~~~ 489 (781)
T 3v9f_A 414 KDSEGN-LWFGTYLGNISYYNTRLKKFQ-IIELEKNELLDVRVFYEDKNKK-IWIGTH-AGVFVIDLASKKVIHHYDTSN 489 (781)
T ss_dssp ECTTSC-EEEEETTEEEEEECSSSCEEE-ECCSTTTCCCCEEEEEECTTSE-EEEEET-TEEEEEESSSSSCCEEECTTT
T ss_pred ECCCCC-EEEEeccCCEEEEcCCCCcEE-EeccCCCCCCeEEEEEECCCCC-EEEEEC-CceEEEeCCCCeEEecccCcc
Confidence 887776 455777677999998776533 332 1346799998887776 555555 56889998876543332222
Q ss_pred ----CCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeec---cCCCEEEEEEcCCCCEEEEEECCCeEEEEe
Q 005096 354 ----RKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNV---HDNTVWDLAWHPIGYLLCSGSNDHTTKFWC 426 (715)
Q Consensus 354 ----~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~---h~~~V~~l~~spdg~~L~sgs~Dg~I~iWd 426 (715)
...|.++.... ++.+.+ |+.++-|..||.++... ..+... ....|.++....+|.+.++ +.+|.|..||
T Consensus 490 ~~~~~~~i~~i~~d~-~g~lWi-gt~~~Gl~~~~~~~~~~-~~~~~~~~l~~~~i~~i~~d~~g~lWi~-T~~Glv~~~d 565 (781)
T 3v9f_A 490 SQLLENFVRSIAQDS-EGRFWI-GTFGGGVGIYTPDMQLV-RKFNQYEGFCSNTINQIYRSSKGQMWLA-TGEGLVCFPS 565 (781)
T ss_dssp SSCSCSCEEEEEECT-TCCEEE-EESSSCEEEECTTCCEE-EEECTTTTCSCSCEEEEEECTTSCEEEE-ETTEEEEESC
T ss_pred cccccceeEEEEEcC-CCCEEE-EEcCCCEEEEeCCCCeE-EEccCCCCCCCCeeEEEEECCCCCEEEE-ECCCceEEEC
Confidence 35788888876 555544 44434477787755432 122111 2357899999888875554 4467657777
Q ss_pred cCC
Q 005096 427 RNR 429 (715)
Q Consensus 427 l~~ 429 (715)
.+.
T Consensus 566 ~~~ 568 (781)
T 3v9f_A 566 ARN 568 (781)
T ss_dssp TTT
T ss_pred CCC
Confidence 644
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.91 E-value=2.7e-06 Score=90.73 Aligned_cols=242 Identities=11% Similarity=-0.003 Sum_probs=155.5
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEE-eCCCcEEEEeCCCCceeeee
Q 005096 146 SINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSG-DDGGAIKYWQNNMNNVKANK 224 (715)
Q Consensus 146 ~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tg-s~dg~I~iwd~~~~~~~~~~ 224 (715)
..+|.+..++. +|+.+.. ..|+..++...+....+.. ...+..++|++.++.|+.+ ...+.|..++++.......+
T Consensus 35 ~~~C~~~~~~~-~ll~~~~-~~I~~i~~~g~~~~~~~~~-~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~ 111 (349)
T 3v64_C 35 RRSCKALGPEP-VLLFANR-IDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVV 111 (349)
T ss_dssp SSCEEESSSCC-EEEEECB-SCEEEECTTSCCEEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE
T ss_pred CCcccccccCc-eeEeecc-cceEEEeCCCCeeEEeecC-CCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEE
Confidence 34566655543 5554443 4588888877665555443 3458899999766666544 46688999998876554444
Q ss_pred cCCCCCeEEEEEecCCCEEEE-EECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEe-CC-CcEEEEECCC
Q 005096 225 SAHKESVRDLSFCRTDLKFCS-CSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGG-KD-SLVKLWDAKS 301 (715)
Q Consensus 225 ~~h~~~I~~l~~spd~~~Las-~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs-~D-g~I~iwDl~s 301 (715)
.........+++.+.+..|+. -...+.|.+++++.......+.........|++++++..|+.+. .+ +.|..++++.
T Consensus 112 ~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG 191 (349)
T 3v64_C 112 STGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDG 191 (349)
T ss_dssp CSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTS
T ss_pred eCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCC
Confidence 333455678999876555544 44567899999875544444444445678999998766555554 34 6788888874
Q ss_pred CceeEEeccCCCceEEEEEcCCCCEEEEEE-CCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEE
Q 005096 302 GRELCSFHGHKNMVLCVKWNQNGNWVLTAS-KDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIF 380 (715)
Q Consensus 302 ~~~~~~~~~~~~~I~sl~~spdg~~Lasgs-~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~ 380 (715)
......+...-.....|+|++++..|+.+. ..+.|..+|+........+.........|++. ++.++++-...+.|.
T Consensus 192 ~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav~--~~~ly~td~~~~~V~ 269 (349)
T 3v64_C 192 SGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF--EDSLYWTDWHTKSIN 269 (349)
T ss_dssp CSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEE--TTEEEEEETTTTEEE
T ss_pred CCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEEE--CCEEEEecCCCCeEE
Confidence 333222233345678999998777777665 45789999987433333333344566778873 566666666777888
Q ss_pred EEEcCCCCceEE
Q 005096 381 HWLVGHETPQVE 392 (715)
Q Consensus 381 iwd~~~~~~~~~ 392 (715)
.++..++.....
T Consensus 270 ~~~~~~G~~~~~ 281 (349)
T 3v64_C 270 SANKFTGKNQEI 281 (349)
T ss_dssp EEETTTCCSCEE
T ss_pred EEEccCCCccEE
Confidence 887545544333
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.89 E-value=3.4e-06 Score=99.88 Aligned_cols=273 Identities=12% Similarity=0.091 Sum_probs=173.9
Q ss_pred CccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEe---------ccCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 005096 144 RCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQ---------AHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQ 214 (715)
Q Consensus 144 ~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~---------~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd 214 (715)
...|.++....+|. |.+|+.++-|..|+..+........ .....|.+++...+++ |.+|+.++-|.+|+
T Consensus 312 ~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~ 389 (781)
T 3v9f_A 312 NASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGK-LWIGTDGGGINVFE 389 (781)
T ss_dssp SSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSC-EEEEEBSSCEEEEE
T ss_pred CCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCC-EEEEeCCCcEEEEE
Confidence 45799999999886 6677766669999987655443211 1235699999887776 44566666688888
Q ss_pred CCCCceeeee---cCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEec--ccCCceEEEEEcCCCCEEEEEe
Q 005096 215 NNMNNVKANK---SAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLT--GHGWDVKSVDWHPTKSLLVSGG 289 (715)
Q Consensus 215 ~~~~~~~~~~---~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~--~~~~~I~si~~spdg~~L~sgs 289 (715)
..++...... ......|.++....++.+ .+++.++-|.++|..+++...... .....|.++....+++ |.+++
T Consensus 390 ~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~l-Wigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~-lwigt 467 (781)
T 3v9f_A 390 NGKRVAIYNKENRELLSNSVLCSLKDSEGNL-WFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKK-IWIGT 467 (781)
T ss_dssp TTEEEEECC-----CCCSBEEEEEECTTSCE-EEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSE-EEEEE
T ss_pred CCCCeEEEccCCCCCCCcceEEEEECCCCCE-EEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCC-EEEEE
Confidence 7655433211 123467888888777664 447776779999987665433221 1346789999887776 55555
Q ss_pred CCCcEEEEECCCCceeEEeccC-----CCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeec----CCCCeEEE
Q 005096 290 KDSLVKLWDAKSGRELCSFHGH-----KNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRG----HRKDVTAL 360 (715)
Q Consensus 290 ~Dg~I~iwDl~s~~~~~~~~~~-----~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~----h~~~V~~l 360 (715)
. +-|.+||.++++........ ...|.++....++++ .+|+.++-|..||.++.+.. .+.. ....|.++
T Consensus 468 ~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~l-Wigt~~~Gl~~~~~~~~~~~-~~~~~~~l~~~~i~~i 544 (781)
T 3v9f_A 468 H-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRF-WIGTFGGGVGIYTPDMQLVR-KFNQYEGFCSNTINQI 544 (781)
T ss_dssp T-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCE-EEEESSSCEEEECTTCCEEE-EECTTTTCSCSCEEEE
T ss_pred C-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCE-EEEEcCCCEEEEeCCCCeEE-EccCCCCCCCCeeEEE
Confidence 5 55899998876544333222 357999999888875 44555445778998766543 3321 23468888
Q ss_pred EEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeec---cCCCEEEEEEcCCCCEEEEEECCCeEEEEecC
Q 005096 361 AWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNV---HDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRN 428 (715)
Q Consensus 361 ~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~---h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~ 428 (715)
.... ++.+.++ +.+|.|..||..+.... .+... ....|.++....+|.+.++ +.+| |..|+.+
T Consensus 545 ~~d~-~g~lWi~-T~~Glv~~~d~~~~~~~-~~~~~~gl~~~~i~~i~~d~~g~lW~~-t~~G-l~~~~~~ 610 (781)
T 3v9f_A 545 YRSS-KGQMWLA-TGEGLVCFPSARNFDYQ-VFQRKEGLPNTHIRAISEDKNGNIWAS-TNTG-ISCYITS 610 (781)
T ss_dssp EECT-TSCEEEE-ETTEEEEESCTTTCCCE-EECGGGTCSCCCCCEEEECSSSCEEEE-CSSC-EEEEETT
T ss_pred EECC-CCCEEEE-ECCCceEEECCCCCcEE-EccccCCCCCceEEEEEECCCCCEEEE-cCCc-eEEEECC
Confidence 8876 5555444 44666588887655422 22111 1246788888888875554 4555 5556654
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.88 E-value=2.5e-06 Score=92.39 Aligned_cols=242 Identities=12% Similarity=0.011 Sum_probs=157.1
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEE-EEeCCCcEEEEeCCCCceeeeec
Q 005096 147 INRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMV-SGDDGGAIKYWQNNMNNVKANKS 225 (715)
Q Consensus 147 I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~-tgs~dg~I~iwd~~~~~~~~~~~ 225 (715)
.+|.+..++ .+|+.+.. ..|+.+++...+....+.. ...+..++|++.+..|+ +-...+.|..++++.......+.
T Consensus 79 ~~C~~~~~~-~~l~~~~~-~~I~~i~~~~~~~~~~~~~-~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~ 155 (386)
T 3v65_B 79 RSCKALGPE-PVLLFANR-IDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVS 155 (386)
T ss_dssp SCEEECSSC-CEEEEECB-SCEEEECTTSCCCEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEEC
T ss_pred CeECCcccc-ceeEeecC-ccceeeccCCCcEEEEecC-CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEe
Confidence 345555553 34554443 5699999887666555543 45688999997666555 44566889999988766544444
Q ss_pred CCCCCeEEEEEecCCCEEEEE-ECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeC-C-CcEEEEECCCC
Q 005096 226 AHKESVRDLSFCRTDLKFCSC-SDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGK-D-SLVKLWDAKSG 302 (715)
Q Consensus 226 ~h~~~I~~l~~spd~~~Las~-s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~-D-g~I~iwDl~s~ 302 (715)
........|++.+.+..|+.+ ...+.|.+++++.......+.........|++++++..|+.+.. + +.|..++++..
T Consensus 156 ~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~ 235 (386)
T 3v65_B 156 TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS 235 (386)
T ss_dssp SSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC
T ss_pred CCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCC
Confidence 334456788888765555544 45678998888655444444444466789999987776665543 3 67888888754
Q ss_pred ceeEEeccCCCceEEEEEcCCCCEEEEEE-CCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEE
Q 005096 303 RELCSFHGHKNMVLCVKWNQNGNWVLTAS-KDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFH 381 (715)
Q Consensus 303 ~~~~~~~~~~~~I~sl~~spdg~~Lasgs-~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~i 381 (715)
.....+...-.....|+|++++..|+.+. ..+.|..+|+........+.........|++. ++.++++....+.|..
T Consensus 236 ~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav~--~~~ly~td~~~~~V~~ 313 (386)
T 3v65_B 236 GRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF--EDSLYWTDWHTKSINS 313 (386)
T ss_dssp SCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEEE--TTEEEEEETTTTEEEE
T ss_pred CcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEEE--CCEEEEeeCCCCeEEE
Confidence 43333333445678999998777676665 45789999987433333333344566788883 5667777777788888
Q ss_pred EEcCCCCceEEE
Q 005096 382 WLVGHETPQVEI 393 (715)
Q Consensus 382 wd~~~~~~~~~~ 393 (715)
++..++.....+
T Consensus 314 ~~~~~G~~~~~i 325 (386)
T 3v65_B 314 ANKFTGKNQEII 325 (386)
T ss_dssp EETTTCCSCEEE
T ss_pred EECCCCcceEEE
Confidence 885555444343
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.87 E-value=5.4e-07 Score=91.07 Aligned_cols=181 Identities=7% Similarity=0.002 Sum_probs=130.4
Q ss_pred CccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCC-CEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceee
Q 005096 144 RCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDH-AIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKA 222 (715)
Q Consensus 144 ~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~-~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~ 222 (715)
+.-...|.|+ ++.++++.+.+|.|+++|+++++.+..+ .... .-..+++. .++++++.-.++.+.+||.++.+.+.
T Consensus 54 ~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~-g~~Ly~ltw~~~~v~V~D~~Tl~~~~ 130 (268)
T 3nok_A 54 NAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASD-GERLYQLTWTEGLLFTWSGMPPQRER 130 (268)
T ss_dssp TCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEEC-SSCEEEEESSSCEEEEEETTTTEEEE
T ss_pred ccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEe-CCEEEEEEccCCEEEEEECCcCcEEE
Confidence 3445678887 4556667777889999999999998887 3222 12335554 23444556678999999999999888
Q ss_pred eecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccC-----CceEEEEEcCCCCEEEEEeCCCcEEEE
Q 005096 223 NKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHG-----WDVKSVDWHPTKSLLVSGGKDSLVKLW 297 (715)
Q Consensus 223 ~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~-----~~I~si~~spdg~~L~sgs~Dg~I~iw 297 (715)
++..... -..++ .|++.|+.+..++.|.++|.++.+.+..+.... ..++.+.|. +|++++....++.|.+.
T Consensus 131 ti~~~~e-GwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vI 206 (268)
T 3nok_A 131 TTRYSGE-GWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEI 206 (268)
T ss_dssp EEECSSC-CCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEE
T ss_pred EEeCCCc-eeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEE
Confidence 8765332 23344 578888888889999999999998888775422 245677887 67655555568899999
Q ss_pred ECCCCceeEEeccC-------------CCceEEEEEcCCCCEEEEEE
Q 005096 298 DAKSGRELCSFHGH-------------KNMVLCVKWNQNGNWVLTAS 331 (715)
Q Consensus 298 Dl~s~~~~~~~~~~-------------~~~I~sl~~spdg~~Lasgs 331 (715)
|.++++.+..+... .+..+.|+|+++++.|++.+
T Consensus 207 Dp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 207 DPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp CTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred eCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 99999988877521 13568999999776666655
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.84 E-value=4.4e-07 Score=90.87 Aligned_cols=190 Identities=12% Similarity=0.102 Sum_probs=131.0
Q ss_pred eEEEEeccC--CCEEEEEEcCCCCEEEEEeCC--CcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEE-ECCCcE
Q 005096 178 FEMILQAHD--HAIRSMVWSHNDNWMVSGDDG--GAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSC-SDDTTV 252 (715)
Q Consensus 178 ~~~~l~~h~--~~V~~l~~spdg~~L~tgs~d--g~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~-s~Dg~V 252 (715)
.+.++ .|+ .-...+.|+. +.++.+.+.+ ..|+++|+++++.+..+.... ......+..+++.|+.. -.++.+
T Consensus 11 v~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~-~~fgeGi~~~~~~ly~ltw~~~~v 87 (243)
T 3mbr_X 11 VVKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPP-PYFGAGIVAWRDRLIQLTWRNHEG 87 (243)
T ss_dssp EEEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCT-TCCEEEEEEETTEEEEEESSSSEE
T ss_pred EEEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCC-CcceeEEEEeCCEEEEEEeeCCEE
Confidence 44555 454 3466888874 5555666654 489999999999888775433 22222223334555544 458899
Q ss_pred EEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCC-----CceEEEEEcCCCCEE
Q 005096 253 KVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHK-----NMVLCVKWNQNGNWV 327 (715)
Q Consensus 253 ~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~-----~~I~sl~~spdg~~L 327 (715)
.+||.++.+.+.++..... -..+++ |++.|+++..++.|.++|.++.+.+.++.-.. ..++.+.|. +|+.+
T Consensus 88 ~v~D~~tl~~~~ti~~~~~-Gwglt~--dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~ly 163 (243)
T 3mbr_X 88 FVYDLATLTPRARFRYPGE-GWALTS--DDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELL 163 (243)
T ss_dssp EEEETTTTEEEEEEECSSC-CCEEEE--CSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEE
T ss_pred EEEECCcCcEEEEEeCCCC-ceEEee--CCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEE
Confidence 9999999999998875432 245554 56767777778899999999998888775322 345667776 66655
Q ss_pred EEEECCCeEEEEECCCCeEEEEeecC-------------CCCeEEEEEccCCCCEEEEEe
Q 005096 328 LTASKDQIIKLYDIRAMKELESFRGH-------------RKDVTALAWHPFHEEYFVSGS 374 (715)
Q Consensus 328 asgs~dg~I~iwDl~t~~~~~~~~~h-------------~~~V~~l~~sp~~~~~l~sgs 374 (715)
+..-.+..|.+.|.++++.+..+... ....+.|++++..+++++||-
T Consensus 164 anvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 164 ANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp EEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred EEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 55546889999999999998887622 135689999996666666663
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.82 E-value=1.3e-06 Score=87.48 Aligned_cols=183 Identities=10% Similarity=0.050 Sum_probs=130.0
Q ss_pred CccEEEEEEcCCCCEEEEEeCC--CeEEEEeCCCCceEEEEeccCCC-EEEEEEcCCCCEEEEEeCCCcEEEEeCCCCce
Q 005096 144 RCSINRVLWTPTGRRLITGSQS--GEFTLWNGQSFNFEMILQAHDHA-IRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNV 220 (715)
Q Consensus 144 ~~~I~~l~~spdg~~Latgs~d--g~I~Iwd~~~~~~~~~l~~h~~~-V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~ 220 (715)
..-.-.+.|+. +.++.+.+.+ ..|+++|+++++.+..+...... -..+++. +++++++.-.++.+.+||.++.+.
T Consensus 20 ~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~-~~~ly~ltw~~~~v~v~D~~tl~~ 97 (243)
T 3mbr_X 20 TAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW-RDRLIQLTWRNHEGFVYDLATLTP 97 (243)
T ss_dssp TCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE-TTEEEEEESSSSEEEEEETTTTEE
T ss_pred ccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe-CCEEEEEEeeCCEEEEEECCcCcE
Confidence 34466888876 4445555554 48999999999999888654332 1234443 234445556789999999999998
Q ss_pred eeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccC-----CceEEEEEcCCCCEEEEEeCCCcEE
Q 005096 221 KANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHG-----WDVKSVDWHPTKSLLVSGGKDSLVK 295 (715)
Q Consensus 221 ~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~-----~~I~si~~spdg~~L~sgs~Dg~I~ 295 (715)
+.++...... ..+ +.|+..|+.+..++.|.++|.++.+.+..+.... ..++.+.|. ++++++..-.+..|.
T Consensus 98 ~~ti~~~~~G-wgl--t~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~ 173 (243)
T 3mbr_X 98 RARFRYPGEG-WAL--TSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTSRIA 173 (243)
T ss_dssp EEEEECSSCC-CEE--EECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTTTEEE
T ss_pred EEEEeCCCCc-eEE--eeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCCCeEE
Confidence 8887654332 334 4577777777778999999999998888776432 345677776 666565555678999
Q ss_pred EEECCCCceeEEeccC-------------CCceEEEEEcCCCCEEEEEEC
Q 005096 296 LWDAKSGRELCSFHGH-------------KNMVLCVKWNQNGNWVLTASK 332 (715)
Q Consensus 296 iwDl~s~~~~~~~~~~-------------~~~I~sl~~spdg~~Lasgs~ 332 (715)
+.|.++++.+..+... .+..+.|+|+++++.|++.+.
T Consensus 174 vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 174 RIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp EECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred EEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 9999999988877521 235689999998887777663
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=98.82 E-value=9.8e-08 Score=110.95 Aligned_cols=269 Identities=11% Similarity=0.031 Sum_probs=154.6
Q ss_pred EEEEcC-CCCEEEEEeCCC-----------eEEEEeCCCCceEE--EEe-ccCCCEEEEEEcCCCCEEEEEeC-CCcEEE
Q 005096 149 RVLWTP-TGRRLITGSQSG-----------EFTLWNGQSFNFEM--ILQ-AHDHAIRSMVWSHNDNWMVSGDD-GGAIKY 212 (715)
Q Consensus 149 ~l~~sp-dg~~Latgs~dg-----------~I~Iwd~~~~~~~~--~l~-~h~~~V~~l~~spdg~~L~tgs~-dg~I~i 212 (715)
++++.+ ++++++.|+.+. .+.+||..+.+... .+. .+.....++++..+++++++|+. +..+.+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~ 269 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 269 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence 556666 888888887643 58899988765432 222 12333445677789999999884 468999
Q ss_pred EeCCCCceeeeecCCCCC-eEEEEEecCCCEEEEEE-CC-----CcEEEEECCCCeeEEEe----cccCCceEEEEEcCC
Q 005096 213 WQNNMNNVKANKSAHKES-VRDLSFCRTDLKFCSCS-DD-----TTVKVWDFARCQEERSL----TGHGWDVKSVDWHPT 281 (715)
Q Consensus 213 wd~~~~~~~~~~~~h~~~-I~~l~~spd~~~Las~s-~D-----g~V~iwdl~~~~~~~~l----~~~~~~I~si~~spd 281 (715)
||..+++-...-...... -.++++.+++++++.|+ .+ ..+.+||..+.+-...- ......-....+..+
T Consensus 270 yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~~ 349 (656)
T 1k3i_A 270 YDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSD 349 (656)
T ss_dssp EEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTT
T ss_pred ecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeecC
Confidence 998876543332222222 23455566889988888 34 57999999876543320 000000000112234
Q ss_pred CCEEEEEeCC---------CcEEEEECCCCceeEEeccCC---------CceEEEEEcC-CCCEEEEEECCC--------
Q 005096 282 KSLLVSGGKD---------SLVKLWDAKSGRELCSFHGHK---------NMVLCVKWNQ-NGNWVLTASKDQ-------- 334 (715)
Q Consensus 282 g~~L~sgs~D---------g~I~iwDl~s~~~~~~~~~~~---------~~I~sl~~sp-dg~~Lasgs~dg-------- 334 (715)
+++++.++.| ..+.+||.++........... ..-.++.|.. +++++++|+.++
T Consensus 350 ~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~ 429 (656)
T 1k3i_A 350 NHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATT 429 (656)
T ss_dssp CSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCC
T ss_pred CceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCC
Confidence 5555555444 356788988765443322111 1234555543 677777877532
Q ss_pred ---eEEEEECCCCeEEEEe--ecCCCC-eEEEEEccCCCCEEEEEeCC-----------CcEEEEEcCCCCceEEE-eec
Q 005096 335 ---IIKLYDIRAMKELESF--RGHRKD-VTALAWHPFHEEYFVSGSLD-----------GSIFHWLVGHETPQVEI-HNV 396 (715)
Q Consensus 335 ---~I~iwDl~t~~~~~~~--~~h~~~-V~~l~~sp~~~~~l~sgs~D-----------G~I~iwd~~~~~~~~~~-~~~ 396 (715)
.|.+||..+..-.... ...... -.++++.+ ++++++.|+.+ ..+.+||..+....... ...
T Consensus 430 ~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~-~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~~ 508 (656)
T 1k3i_A 430 NAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLP-DGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSI 508 (656)
T ss_dssp CEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECT-TSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSS
T ss_pred cceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECC-CCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecCCCCC
Confidence 6888888766544332 222222 23445555 78888888754 46889998664321110 001
Q ss_pred cCCCEEEEEEcCCCCEEEEEEC
Q 005096 397 HDNTVWDLAWHPIGYLLCSGSN 418 (715)
Q Consensus 397 h~~~V~~l~~spdg~~L~sgs~ 418 (715)
......+..+.+|+++++.|+.
T Consensus 509 ~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 509 VRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp CCCTTEEEEECTTSCEEEEECC
T ss_pred ccccccHhhcCCCcEEEecCCC
Confidence 1112234556789999999885
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=98.81 E-value=2.1e-06 Score=89.54 Aligned_cols=224 Identities=8% Similarity=-0.003 Sum_probs=138.2
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCC--cEEEEeCCCCceee
Q 005096 145 CSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGG--AIKYWQNNMNNVKA 222 (715)
Q Consensus 145 ~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg--~I~iwd~~~~~~~~ 222 (715)
.....++|+++++++++-..++.|..||.+.. ....+. .......+++.++++++++..... .|..++..+++...
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~ 109 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVET 109 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEE
Confidence 56789999999987667668899999997753 333333 345688999999999666554332 46667777776543
Q ss_pred eecC-CCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCee-EEEec---------ccCCceEEEEEcCCCCEEEEE-eC
Q 005096 223 NKSA-HKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQE-ERSLT---------GHGWDVKSVDWHPTKSLLVSG-GK 290 (715)
Q Consensus 223 ~~~~-h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~-~~~l~---------~~~~~I~si~~spdg~~L~sg-s~ 290 (715)
.... .......++...++..+++-..++.|+++|..+++. +.... ......+.| ++++++|+++ ..
T Consensus 110 ~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~ 187 (306)
T 2p4o_A 110 LLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTE 187 (306)
T ss_dssp EEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETT
T ss_pred EEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCC
Confidence 3221 122334555544444444444588999999875431 21110 111234455 6777766555 45
Q ss_pred CCcEEEEECCC-Cce--eEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEE--EeecCCCCeEEEEEc--
Q 005096 291 DSLVKLWDAKS-GRE--LCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELE--SFRGHRKDVTALAWH-- 363 (715)
Q Consensus 291 Dg~I~iwDl~s-~~~--~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~--~~~~h~~~V~~l~~s-- 363 (715)
.+.|.+||++. ++. ...+.. ......++++++|+++++....+.|.++|.. ++... .+.......++++|.
T Consensus 188 ~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~g~ 265 (306)
T 2p4o_A 188 KMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQT 265 (306)
T ss_dssp TTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCS
T ss_pred CCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecccccCCceEEEEecc
Confidence 67899999874 321 112211 1345678899999877776677899999975 55432 333334678999998
Q ss_pred -cCCCCEEEEEeC
Q 005096 364 -PFHEEYFVSGSL 375 (715)
Q Consensus 364 -p~~~~~l~sgs~ 375 (715)
+ +++.|++++.
T Consensus 266 ~~-d~~~LyVt~~ 277 (306)
T 2p4o_A 266 EG-DCTAIYVVTN 277 (306)
T ss_dssp TT-TTTEEEEEEC
T ss_pred cC-CCCEEEEECC
Confidence 6 4444444433
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=98.81 E-value=2e-05 Score=82.61 Aligned_cols=228 Identities=11% Similarity=0.012 Sum_probs=146.4
Q ss_pred EEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEE-eCCCcEEEEeCCC----CceeeeecCCCCCeE
Q 005096 158 RLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSG-DDGGAIKYWQNNM----NNVKANKSAHKESVR 232 (715)
Q Consensus 158 ~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tg-s~dg~I~iwd~~~----~~~~~~~~~h~~~I~ 232 (715)
+|+.+.. ..|+..|+.+.+....+. .......++|+++++.|+.+ ..++.|..++++. ......+........
T Consensus 3 ~ll~~~~-~~I~~i~~~~~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~ 80 (316)
T 1ijq_A 3 YLFFTNR-HEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 80 (316)
T ss_dssp EEEEECB-SSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred EEEEECC-CeEEEEECCCcceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcC
Confidence 3444444 458999998877666554 34568899999876666544 4568899999876 222222322334567
Q ss_pred EEEEecCCCEEE-EEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCC--CcEEEEECCCCceeEEe-
Q 005096 233 DLSFCRTDLKFC-SCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKD--SLVKLWDAKSGRELCSF- 308 (715)
Q Consensus 233 ~l~~spd~~~La-s~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~D--g~I~iwDl~s~~~~~~~- 308 (715)
.|++...+..|+ +-..++.|.++|++.......+.........|++++++..|+.+... +.|..++++. +....+
T Consensus 81 glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG-~~~~~~~ 159 (316)
T 1ijq_A 81 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-VDIYSLV 159 (316)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-CCEEEEE
T ss_pred EEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCC-CCeEEEE
Confidence 899987555554 44567899999987554433344344567899999877766655543 6788888864 333333
Q ss_pred ccCCCceEEEEEcCCCCEEEEEE-CCCeEEEEECCCCeEEEEee---cCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEc
Q 005096 309 HGHKNMVLCVKWNQNGNWVLTAS-KDQIIKLYDIRAMKELESFR---GHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLV 384 (715)
Q Consensus 309 ~~~~~~I~sl~~spdg~~Lasgs-~dg~I~iwDl~t~~~~~~~~---~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~ 384 (715)
...-.....|+|++++..|+.+. ..+.|..+|+.. .....+. ........|++. ++.++++-...+.|..++.
T Consensus 160 ~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg-~~~~~~~~~~~~~~~P~giav~--~~~ly~~d~~~~~V~~~~~ 236 (316)
T 1ijq_A 160 TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG-GNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANR 236 (316)
T ss_dssp CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS-CSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEET
T ss_pred ECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCC-CceEEEeecCCccCCcEEEEEE--CCEEEEEECCCCeEEEEeC
Confidence 33345678999998877777665 456899999874 3333332 123456778874 4666666667778888887
Q ss_pred CCCCceE
Q 005096 385 GHETPQV 391 (715)
Q Consensus 385 ~~~~~~~ 391 (715)
.+++...
T Consensus 237 ~~g~~~~ 243 (316)
T 1ijq_A 237 LTGSDVN 243 (316)
T ss_dssp TTCCCCE
T ss_pred CCCcceE
Confidence 6554433
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=98.79 E-value=3.7e-07 Score=107.72 Aligned_cols=243 Identities=9% Similarity=-0.028 Sum_probs=137.6
Q ss_pred CCCc-cEEEEEEc-CCCCEEEEEeC-CC----eEEEEeCCCC-ceEE-EEeccCCCEEEEEEcCCCCEEEEEeCC-----
Q 005096 142 KNRC-SINRVLWT-PTGRRLITGSQ-SG----EFTLWNGQSF-NFEM-ILQAHDHAIRSMVWSHNDNWMVSGDDG----- 207 (715)
Q Consensus 142 ~H~~-~I~~l~~s-pdg~~Latgs~-dg----~I~Iwd~~~~-~~~~-~l~~h~~~V~~l~~spdg~~L~tgs~d----- 207 (715)
+|.- .+...+|| |||++||.+.. +| .|+++|+.++ +.+. .+. .....++|++|++.|+....+
T Consensus 170 ~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~ 246 (751)
T 2xe4_A 170 GKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRE 246 (751)
T ss_dssp TCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCE
T ss_pred CCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCC
Confidence 4443 78899999 99999886543 33 4999999988 6321 111 113468899999888776654
Q ss_pred CcEEEEeCCCCce--eeeec-CCCCCeEEEEEecCCCEEEEEEC---CCcEEEEECCCCe-eE--EEe-cccCCceEEEE
Q 005096 208 GAIKYWQNNMNNV--KANKS-AHKESVRDLSFCRTDLKFCSCSD---DTTVKVWDFARCQ-EE--RSL-TGHGWDVKSVD 277 (715)
Q Consensus 208 g~I~iwd~~~~~~--~~~~~-~h~~~I~~l~~spd~~~Las~s~---Dg~V~iwdl~~~~-~~--~~l-~~~~~~I~si~ 277 (715)
..|+++++.++.. ...+. ........+.|++|+++|+..+. ...|+++|+.+.. .. ..+ ........++.
T Consensus 247 ~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~ 326 (751)
T 2xe4_A 247 NKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQ 326 (751)
T ss_dssp EEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEE
T ss_pred CEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEe
Confidence 2577788877532 22222 22345678899999999887653 3468889987652 12 333 33344556666
Q ss_pred EcCCCCEEEEEeCC----CcEEEEECCCC-ceeE-EeccC-CCceEEEEEcCCCCEEEEEECCCe--EEEEEC-------
Q 005096 278 WHPTKSLLVSGGKD----SLVKLWDAKSG-RELC-SFHGH-KNMVLCVKWNQNGNWVLTASKDQI--IKLYDI------- 341 (715)
Q Consensus 278 ~spdg~~L~sgs~D----g~I~iwDl~s~-~~~~-~~~~~-~~~I~sl~~spdg~~Lasgs~dg~--I~iwDl------- 341 (715)
|+.++.+++....+ ..|.++|+.+. +... .+... ...+..+.+. ++.++++...++. |.++|+
T Consensus 327 ~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~dl~~~~~~~ 405 (751)
T 2xe4_A 327 MHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIWTMMADSQDGVF 405 (751)
T ss_dssp EETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEEEEECCTTTSCC
T ss_pred eeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEEEecccccccc
Confidence 65444444444443 25777787653 2222 23221 2245666665 3344555666775 556675
Q ss_pred CCCeEEEEeecCC-CCeEEEEE----ccCCCCEEEEEeCC---CcEEEEEcCCCC
Q 005096 342 RAMKELESFRGHR-KDVTALAW----HPFHEEYFVSGSLD---GSIFHWLVGHET 388 (715)
Q Consensus 342 ~t~~~~~~~~~h~-~~V~~l~~----sp~~~~~l~sgs~D---G~I~iwd~~~~~ 388 (715)
.+++.+..+.... ..+..+.+ +.++..++++.+.. ..|+.+|+.++.
T Consensus 406 ~~g~~~~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~ 460 (751)
T 2xe4_A 406 KAGTGLREVVMEEPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHS 460 (751)
T ss_dssp CTTTCCEECCCCCSSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCC
T ss_pred cCCccceEECCCCceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 3333133332111 22333332 33455566665543 346666765544
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.79 E-value=1.1e-05 Score=85.89 Aligned_cols=231 Identities=5% Similarity=-0.079 Sum_probs=148.1
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEE-CCCcEEEEECCCCeeEEEeccc
Q 005096 191 SMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCS-DDTTVKVWDFARCQEERSLTGH 269 (715)
Q Consensus 191 ~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s-~Dg~V~iwdl~~~~~~~~l~~~ 269 (715)
|.+..+ ..+|+.+. ...|+..+++.......+. ....+..++|.+.+..|+.+. .++.|+.++++.......+...
T Consensus 38 C~~~~~-~~~ll~~~-~~~I~~i~~~g~~~~~~~~-~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~ 114 (349)
T 3v64_C 38 CKALGP-EPVLLFAN-RIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTG 114 (349)
T ss_dssp EEESSS-CCEEEEEC-BSCEEEECTTSCCEEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS
T ss_pred cccccc-CceeEeec-ccceEEEeCCCCeeEEeec-CCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCC
Confidence 444444 33444443 3457778877665544433 344588999997666666554 5788999998766544444433
Q ss_pred CCceEEEEEcCCCCEE-EEEeCCCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEE-CC-CeEEEEECCCCeE
Q 005096 270 GWDVKSVDWHPTKSLL-VSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTAS-KD-QIIKLYDIRAMKE 346 (715)
Q Consensus 270 ~~~I~si~~spdg~~L-~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs-~d-g~I~iwDl~t~~~ 346 (715)
......++++..+..| ++-...+.|.+++++.......+.........|++++.+.+|+... .+ +.|..+|+.. ..
T Consensus 115 ~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG-~~ 193 (349)
T 3v64_C 115 LESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDG-SG 193 (349)
T ss_dssp CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-CS
T ss_pred CCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCC-CC
Confidence 4456788998755544 5555567899999885544444444445678999998766666554 34 7898888864 33
Q ss_pred EEEe-ecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEE
Q 005096 347 LESF-RGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFW 425 (715)
Q Consensus 347 ~~~~-~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iW 425 (715)
...+ ...-...+.|+++++++.++++-...+.|..+|++..... .+..........|++. ++.++++-...+.|..+
T Consensus 194 ~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~-~~~~~~~~~P~giav~-~~~ly~td~~~~~V~~~ 271 (349)
T 3v64_C 194 RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRK-AVISQGLPHPFAITVF-EDSLYWTDWHTKSINSA 271 (349)
T ss_dssp CEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-EEECSSCSSEEEEEEE-TTEEEEEETTTTEEEEE
T ss_pred cEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceE-EEEeCCCCCceEEEEE-CCEEEEecCCCCeEEEE
Confidence 3333 2334567899999866777777777788999998754432 3333334566788884 45555665567777777
Q ss_pred ec
Q 005096 426 CR 427 (715)
Q Consensus 426 dl 427 (715)
+.
T Consensus 272 ~~ 273 (349)
T 3v64_C 272 NK 273 (349)
T ss_dssp ET
T ss_pred Ec
Confidence 64
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=98.78 E-value=1.8e-05 Score=83.00 Aligned_cols=225 Identities=8% Similarity=-0.028 Sum_probs=144.3
Q ss_pred EEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEE-CCCcEEEEECCC----CeeEEEecccCCceE
Q 005096 200 WMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCS-DDTTVKVWDFAR----CQEERSLTGHGWDVK 274 (715)
Q Consensus 200 ~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s-~Dg~V~iwdl~~----~~~~~~l~~~~~~I~ 274 (715)
+|+.+.. ..|+..|++..+....+. .......++|++++..|+.+. .++.|..+|++. ......+........
T Consensus 3 ~ll~~~~-~~I~~i~~~~~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~ 80 (316)
T 1ijq_A 3 YLFFTNR-HEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 80 (316)
T ss_dssp EEEEECB-SSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred EEEEECC-CeEEEEECCCcceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcC
Confidence 3444443 568889988876555443 345678999998766665554 468999999875 222223332334567
Q ss_pred EEEEcCCCC-EEEEEeCCCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECC--CeEEEEECCCCeEEEEe-
Q 005096 275 SVDWHPTKS-LLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKD--QIIKLYDIRAMKELESF- 350 (715)
Q Consensus 275 si~~spdg~-~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~d--g~I~iwDl~t~~~~~~~- 350 (715)
.|+++..+. ++++-..++.|.++|++.......+.........+++++++.+|+.+... +.|..+++. ++....+
T Consensus 81 glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d-G~~~~~~~ 159 (316)
T 1ijq_A 81 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYSLV 159 (316)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCCEEEEE
T ss_pred EEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCC-CCCeEEEE
Confidence 899986555 44555667889999987544333333334567899999877767666543 688888886 4333333
Q ss_pred ecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeec--cCCCEEEEEEcCCCCEEEEEECCCeEEEEecC
Q 005096 351 RGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNV--HDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRN 428 (715)
Q Consensus 351 ~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~--h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~ 428 (715)
...-.....|+++++++.++++-+..+.|..+|++..... .+... .......|++. .+.++++-...+.|..++..
T Consensus 160 ~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~-~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~ 237 (316)
T 1ijq_A 160 TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRK-TILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRL 237 (316)
T ss_dssp CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-EEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETT
T ss_pred ECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceE-EEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCC
Confidence 2334567899999866666677667789999999754332 22221 23456788885 35566666667888888764
Q ss_pred C
Q 005096 429 R 429 (715)
Q Consensus 429 ~ 429 (715)
.
T Consensus 238 ~ 238 (316)
T 1ijq_A 238 T 238 (316)
T ss_dssp T
T ss_pred C
Confidence 3
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=98.76 E-value=2e-05 Score=85.62 Aligned_cols=234 Identities=10% Similarity=-0.024 Sum_probs=153.7
Q ss_pred CEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEE-eCCCcEEEEeCCCC----ceeeeecCCCCCe
Q 005096 157 RRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSG-DDGGAIKYWQNNMN----NVKANKSAHKESV 231 (715)
Q Consensus 157 ~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tg-s~dg~I~iwd~~~~----~~~~~~~~h~~~I 231 (715)
.+|+.+.. ..|+..+++.......+. ....+..|+|+..++.|+.+ ..++.|+.++++.. .....+.......
T Consensus 84 ~~ll~~~~-~~I~~i~l~~~~~~~~~~-~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p 161 (400)
T 3p5b_L 84 AYLFFTNR-HEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP 161 (400)
T ss_dssp CEEEEEET-TEEEEECTTSCSCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCE
T ss_pred ceeEEecc-ceeEEEccCCcceeEecc-ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCc
Confidence 35555544 579999998776655544 45678899999876666555 45678888888752 2333333345567
Q ss_pred EEEEEecCCCEEEE-EECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeC--CCcEEEEECCCCceeEEe
Q 005096 232 RDLSFCRTDLKFCS-CSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGK--DSLVKLWDAKSGRELCSF 308 (715)
Q Consensus 232 ~~l~~spd~~~Las-~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~--Dg~I~iwDl~s~~~~~~~ 308 (715)
..|++...+..|+. -...+.|.+.|++.......+.........|++++.+.+|+.+.. .+.|...+++.......+
T Consensus 162 ~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~ 241 (400)
T 3p5b_L 162 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV 241 (400)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEE
T ss_pred ccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEE
Confidence 88999875555554 455788999998766555455445556889999997776666653 368999998754444344
Q ss_pred ccCCCceEEEEEcCCCCEEEEEE-CCCeEEEEECCCCeEEEEeec--CCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcC
Q 005096 309 HGHKNMVLCVKWNQNGNWVLTAS-KDQIIKLYDIRAMKELESFRG--HRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVG 385 (715)
Q Consensus 309 ~~~~~~I~sl~~spdg~~Lasgs-~dg~I~iwDl~t~~~~~~~~~--h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~ 385 (715)
...-.....|++++++..|+.+. ..+.|..+|+........+.. .......|++. ++.++++-...+.|..+|..
T Consensus 242 ~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~--~~~lywtd~~~~~V~~~~~~ 319 (400)
T 3p5b_L 242 TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRL 319 (400)
T ss_dssp CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE--TTEEEEEESSSCSEEEEESS
T ss_pred ECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe--CCEEEEecCCCCeEEEEEcC
Confidence 43446789999998877777765 457899999874333222222 23455677773 56677777777888888866
Q ss_pred CCCceEEEe
Q 005096 386 HETPQVEIH 394 (715)
Q Consensus 386 ~~~~~~~~~ 394 (715)
++.....+.
T Consensus 320 ~G~~~~~i~ 328 (400)
T 3p5b_L 320 TGSDVNLLA 328 (400)
T ss_dssp SCCCCEEEE
T ss_pred CCCceEEEe
Confidence 665554443
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=98.75 E-value=3.8e-05 Score=80.97 Aligned_cols=268 Identities=7% Similarity=0.002 Sum_probs=149.4
Q ss_pred CccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEe----ccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc
Q 005096 144 RCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQ----AHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNN 219 (715)
Q Consensus 144 ~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~----~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~ 219 (715)
...|.+|.|..++..++ ++.+|.|.. ..+.++.-..+. .....+.+|.|.+ ++.++ ++.++.|.. ..+.++
T Consensus 35 ~~~~~~v~~~~~~~~~~-~G~~g~i~~-s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~~~~-~g~~g~i~~-S~DgG~ 109 (327)
T 2xbg_A 35 TATILDMSFIDRHHGWL-VGVNATLME-TRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NEGWI-VGEPPIMLH-TTDGGQ 109 (327)
T ss_dssp SSCEEEEEESSSSCEEE-EETTTEEEE-ESSTTSSCEECCCCCSCCCCEEEEEEEET-TEEEE-EEETTEEEE-ESSTTS
T ss_pred CCcEEEEEECCCCcEEE-EcCCCeEEE-eCCCCCCCeECCCCCCCCCccEEEEEecC-CeEEE-EECCCeEEE-ECCCCC
Confidence 45799999988877777 456776533 333332222211 1244688999875 44444 455665443 233333
Q ss_pred eeeeec---CCCCCeEEEEEecCCCEEEEEECCCcEEE-EECCCCeeE-EEecccCCceEEEEEcCCCCEEEEEeCCCcE
Q 005096 220 VKANKS---AHKESVRDLSFCRTDLKFCSCSDDTTVKV-WDFARCQEE-RSLTGHGWDVKSVDWHPTKSLLVSGGKDSLV 294 (715)
Q Consensus 220 ~~~~~~---~h~~~I~~l~~spd~~~Las~s~Dg~V~i-wdl~~~~~~-~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I 294 (715)
...... .+...+..|.+..++..+++ +.++.|.. .| .++.- .........+.++++.+++.+++++...+.+
T Consensus 110 tW~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~g~v~~S~D--gG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~ 186 (327)
T 2xbg_A 110 SWSQIPLDPKLPGSPRLIKALGNGSAEMI-TNVGAIYRTKD--SGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFY 186 (327)
T ss_dssp SCEECCCCTTCSSCEEEEEEEETTEEEEE-ETTCCEEEESS--TTSSEEEEECSCCCCEEEEEECTTSCEEEEETTSSEE
T ss_pred CceECccccCCCCCeEEEEEECCCCEEEE-eCCccEEEEcC--CCCCCEEeecCCCcceEEEEEcCCCcEEEEECCCcEE
Confidence 222221 22345777887766665554 45665432 23 22222 2223345578899999988877766543333
Q ss_pred EEEEC--CCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeec----CCCCeEEEEEccCCCC
Q 005096 295 KLWDA--KSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRG----HRKDVTALAWHPFHEE 368 (715)
Q Consensus 295 ~iwDl--~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~----h~~~V~~l~~sp~~~~ 368 (715)
+-+|- .+.+.+. ......+..+.+.++++++ +++.+|.|++.+...++.-..+.. ....+.++++.+ ++.
T Consensus 187 ~S~d~gG~tW~~~~--~~~~~~~~~~~~~~~g~~~-~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~-~~~ 262 (327)
T 2xbg_A 187 STWEPGQTAWEPHN--RTTSRRLHNMGFTPDGRLW-MIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRT-PNE 262 (327)
T ss_dssp EEECTTCSSCEEEE--CCSSSCEEEEEECTTSCEE-EEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESS-SSC
T ss_pred EEeCCCCCceeECC--CCCCCccceeEECCCCCEE-EEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecC-CCE
Confidence 33442 2223321 2345678899999888755 455688887775333443333321 224588899887 566
Q ss_pred EEEEEeCCCcEEEEEcCCCCceEEEeec--cCCCEEEEEEcCCCCEEEEEECCCeEEEEe
Q 005096 369 YFVSGSLDGSIFHWLVGHETPQVEIHNV--HDNTVWDLAWHPIGYLLCSGSNDHTTKFWC 426 (715)
Q Consensus 369 ~l~sgs~DG~I~iwd~~~~~~~~~~~~~--h~~~V~~l~~spdg~~L~sgs~Dg~I~iWd 426 (715)
+++++ .+|.| ++..+.+..-..+... ....+.++.|..++ .+++++.+|.|.-++
T Consensus 263 ~~~~g-~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~-~~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 263 VWLAG-GAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPD-QGFILGQKGILLRYV 319 (327)
T ss_dssp EEEEE-STTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETT-EEEEECSTTEEEEEC
T ss_pred EEEEe-CCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCC-ceEEEcCCceEEEEc
Confidence 66654 46766 3444434333222211 23567888887544 577777899776664
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.71 E-value=3e-06 Score=93.07 Aligned_cols=236 Identities=9% Similarity=0.059 Sum_probs=142.3
Q ss_pred cEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCC-C----cEEEEeCCCCc
Q 005096 146 SINRVLWTP-TGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDG-G----AIKYWQNNMNN 219 (715)
Q Consensus 146 ~I~~l~~sp-dg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~d-g----~I~iwd~~~~~ 219 (715)
....|+|++ ++..|+++...+.|+++|.++........ .......|+|++++++|+++... + .+.+++. .+.
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~-~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g~ 215 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS-GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ESG 215 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC-CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GGT
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec-CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CCc
Confidence 457899998 45667777666889999998766555443 45668899999999977666542 2 2333333 222
Q ss_pred ee--eeecCCCCCeEEEEEec-CCCEEEEEECCCcEEEEECCCCeeEEEecc-cCCceEEEEEcCCCCEEEEE-eCCCcE
Q 005096 220 VK--ANKSAHKESVRDLSFCR-TDLKFCSCSDDTTVKVWDFARCQEERSLTG-HGWDVKSVDWHPTKSLLVSG-GKDSLV 294 (715)
Q Consensus 220 ~~--~~~~~h~~~I~~l~~sp-d~~~Las~s~Dg~V~iwdl~~~~~~~~l~~-~~~~I~si~~spdg~~L~sg-s~Dg~I 294 (715)
.. ..+. .......+++++ ++.++++-..++.|+.||............ ....-..|+|++++++|+++ ..++.|
T Consensus 216 ~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I 294 (430)
T 3tc9_A 216 FKVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYI 294 (430)
T ss_dssp SCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEE
T ss_pred eeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEE
Confidence 21 1221 234467788999 566566655678999999987654222221 22456789999999955544 566789
Q ss_pred EEEECCC--Cce--eEEeccC---------------CCceE-EEEEc--------CCCCEEEEEECCCeEEEEECCCCeE
Q 005096 295 KLWDAKS--GRE--LCSFHGH---------------KNMVL-CVKWN--------QNGNWVLTASKDQIIKLYDIRAMKE 346 (715)
Q Consensus 295 ~iwDl~s--~~~--~~~~~~~---------------~~~I~-sl~~s--------pdg~~Lasgs~dg~I~iwDl~t~~~ 346 (715)
..+|.+. ++. +..+.+. -..-. .+++. .+++++++-...+.|+.+| .+++.
T Consensus 295 ~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~-~~G~v 373 (430)
T 3tc9_A 295 LRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILT-PQGRV 373 (430)
T ss_dssp EEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEEC-TTSEE
T ss_pred EEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEEC-CCCcE
Confidence 9987653 211 1222111 01122 44443 3355444444567888888 44654
Q ss_pred EEEeec----C-------------CCCeEEEEEccCCCCEEEEEeCCCcEEEEEcC
Q 005096 347 LESFRG----H-------------RKDVTALAWHPFHEEYFVSGSLDGSIFHWLVG 385 (715)
Q Consensus 347 ~~~~~~----h-------------~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~ 385 (715)
...... . -.....|+++++++.++++-..+.+|+.++.+
T Consensus 374 ~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 374 TTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp EEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 333321 0 11467888887456666666666778777653
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.71 E-value=9.3e-06 Score=87.82 Aligned_cols=225 Identities=5% Similarity=-0.102 Sum_probs=147.2
Q ss_pred CEEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEE-CCCcEEEEECCCCeeEEEecccCCceEEEE
Q 005096 199 NWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCS-DDTTVKVWDFARCQEERSLTGHGWDVKSVD 277 (715)
Q Consensus 199 ~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s-~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~ 277 (715)
.+|+.+. ...|+.+++.......... ....+..++|.+.+..|+.+. .++.|+.++++.......+.........|+
T Consensus 88 ~~l~~~~-~~~I~~i~~~~~~~~~~~~-~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~gla 165 (386)
T 3v65_B 88 PVLLFAN-RIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLA 165 (386)
T ss_dssp CEEEEEC-BSCEEEECTTSCCCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEE
T ss_pred ceeEeec-CccceeeccCCCcEEEEec-CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEE
Confidence 4454443 3578888887765544443 345688999997666665554 567899999877654444443344567888
Q ss_pred EcCCCCEE-EEEeCCCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEEC-C-CeEEEEECCCCeEEEEeecCC
Q 005096 278 WHPTKSLL-VSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASK-D-QIIKLYDIRAMKELESFRGHR 354 (715)
Q Consensus 278 ~spdg~~L-~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~-d-g~I~iwDl~t~~~~~~~~~h~ 354 (715)
+++.+..| ++-...+.|.+++++.......+.........|++++++.+|+.+.. + +.|..+|+............-
T Consensus 166 vd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~ 245 (386)
T 3v65_B 166 VDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHL 245 (386)
T ss_dssp EETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSC
T ss_pred EEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCC
Confidence 88755544 45555678989888755444444444466889999987776666553 3 688888887433333333344
Q ss_pred CCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEec
Q 005096 355 KDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCR 427 (715)
Q Consensus 355 ~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl 427 (715)
...+.|+|+++++.++++-+..+.|..+|++.... ..+..........|++. ++.++++....+.|..++.
T Consensus 246 ~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~-~~~~~~~~~~P~giav~-~~~ly~td~~~~~V~~~~~ 316 (386)
T 3v65_B 246 FWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHR-KAVISQGLPHPFAITVF-EDSLYWTDWHTKSINSANK 316 (386)
T ss_dssp SCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSC-EEEECSSCSSEEEEEEE-TTEEEEEETTTTEEEEEET
T ss_pred CCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCee-EEEEECCCCCceEEEEE-CCEEEEeeCCCCeEEEEEC
Confidence 56789999986677777777778899999865443 23333334567788884 4556666666788877774
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.69 E-value=1.2e-05 Score=81.34 Aligned_cols=202 Identities=13% Similarity=0.158 Sum_probs=137.3
Q ss_pred EEecCCCCccEEEEEEcCCCCEEE-EEeCCCeEEEEeCCCCceEEEEecc-CCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 005096 137 HTSLNKNRCSINRVLWTPTGRRLI-TGSQSGEFTLWNGQSFNFEMILQAH-DHAIRSMVWSHNDNWMVSGDDGGAIKYWQ 214 (715)
Q Consensus 137 ~~~l~~H~~~I~~l~~spdg~~La-tgs~dg~I~Iwd~~~~~~~~~l~~h-~~~V~~l~~spdg~~L~tgs~dg~I~iwd 214 (715)
.+.+.+-.+.+..++|+++++.|+ +...++.|...|.. ++.++.+... ......|++..++.++++.-.++.|.+++
T Consensus 19 ~~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~ 97 (255)
T 3qqz_A 19 GKEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVIS 97 (255)
T ss_dssp EEECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEE
T ss_pred ceECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEE
Confidence 356777777899999999876555 57788899999998 7777777432 35688899998887767766778899988
Q ss_pred CCCCce---eeee------cCCCCCeEEEEEecCCCEEEEEECCCcEEEEECC---CCeeEEEec-------ccCCceEE
Q 005096 215 NNMNNV---KANK------SAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFA---RCQEERSLT-------GHGWDVKS 275 (715)
Q Consensus 215 ~~~~~~---~~~~------~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~---~~~~~~~l~-------~~~~~I~s 275 (715)
+..... .... ...+.....|+|+++++.|+++.......||.+. ....+..+. .....+.+
T Consensus 98 v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~ 177 (255)
T 3qqz_A 98 LTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSG 177 (255)
T ss_dssp ECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCE
T ss_pred cCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCcee
Confidence 765432 1111 1234457899999999888777766555555553 111112221 13346789
Q ss_pred EEEcCCCC-EEEEEeCCCcEEEEECCCCceeEEeccCC---------CceEEEEEcCCCCEEEEEECCCeEEEEEC
Q 005096 276 VDWHPTKS-LLVSGGKDSLVKLWDAKSGRELCSFHGHK---------NMVLCVKWNQNGNWVLTASKDQIIKLYDI 341 (715)
Q Consensus 276 i~~spdg~-~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~---------~~I~sl~~spdg~~Lasgs~dg~I~iwDl 341 (715)
+++++... +++....+..|.++|.+ ++.+..+.-.. ..-..|+|.++|+ |++.++.+.+++|.-
T Consensus 178 l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~-lyIvsE~n~~y~f~~ 251 (255)
T 3qqz_A 178 AEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGN-IYIVSEPNRFYRFTP 251 (255)
T ss_dssp EEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCC-EEEEETTTEEEEEEC
T ss_pred EEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCC-EEEEcCCceEEEEEe
Confidence 99999765 55555566788889976 55555543221 2568999999998 555577777777754
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=98.68 E-value=2e-05 Score=82.83 Aligned_cols=232 Identities=10% Similarity=0.009 Sum_probs=146.4
Q ss_pred EEEEEeCCCeEEEEeCCCCc--eEEEEeccCCCEEEEEEcCCCCEEE-EEeCCCcEEEEeCCCCcee-eeecCCCCCeEE
Q 005096 158 RLITGSQSGEFTLWNGQSFN--FEMILQAHDHAIRSMVWSHNDNWMV-SGDDGGAIKYWQNNMNNVK-ANKSAHKESVRD 233 (715)
Q Consensus 158 ~Latgs~dg~I~Iwd~~~~~--~~~~l~~h~~~V~~l~~spdg~~L~-tgs~dg~I~iwd~~~~~~~-~~~~~h~~~I~~ 233 (715)
+|+.+. ...|+.+|++... ....+. ....+..++|...+..|+ +-..++.|..++.+..... ..+.........
T Consensus 6 ~ll~~~-~~~I~~i~l~~~~~~~~~~~~-~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~g 83 (318)
T 3sov_A 6 LLLYAN-RRDLRLVDATNGKENATIVVG-GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDG 83 (318)
T ss_dssp EEEEEC-EEEEEEEETTCTTSCCEEEEE-EEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCE
T ss_pred EEEEEc-cCeEEEEECCCCceEEEEEec-CCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccE
Confidence 344443 4568999988753 222222 224567899988655554 4456688999988766321 222222345678
Q ss_pred EEEecCCCEEE-EEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeC--CCcEEEEECCCCceeEEecc
Q 005096 234 LSFCRTDLKFC-SCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGK--DSLVKLWDAKSGRELCSFHG 310 (715)
Q Consensus 234 l~~spd~~~La-s~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~--Dg~I~iwDl~s~~~~~~~~~ 310 (715)
+++...+..|+ +-...+.|.+++++.......+.........|++++.+.+|+.+.. .+.|..++++.......+..
T Consensus 84 lavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~ 163 (318)
T 3sov_A 84 LACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINS 163 (318)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECS
T ss_pred EEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEEC
Confidence 88987555554 4455778999998754433334345566789999987666666653 57888888874333333333
Q ss_pred CCCceEEEEEcCCCCEEEEEE-CCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCc
Q 005096 311 HKNMVLCVKWNQNGNWVLTAS-KDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETP 389 (715)
Q Consensus 311 ~~~~I~sl~~spdg~~Lasgs-~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~ 389 (715)
.-..-+.|+|++++..|+.+. ..+.|..+|+........+.........|++. .+.++++-...+.|..++..++..
T Consensus 164 ~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~--~~~lywtd~~~~~V~~~~~~~G~~ 241 (318)
T 3sov_A 164 EIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLF--EDILYWTDWSTHSILACNKYTGEG 241 (318)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEE--TTEEEEEETTTTEEEEEETTTCCS
T ss_pred CCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEe--CCEEEEEecCCCeEEEEECCCCCc
Confidence 345678999999777777665 56789999987433222223344566778775 456666766778888888866655
Q ss_pred eEEE
Q 005096 390 QVEI 393 (715)
Q Consensus 390 ~~~~ 393 (715)
...+
T Consensus 242 ~~~i 245 (318)
T 3sov_A 242 LREI 245 (318)
T ss_dssp CEEE
T ss_pred eEEE
Confidence 4443
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.66 E-value=1.2e-05 Score=81.43 Aligned_cols=201 Identities=8% Similarity=0.097 Sum_probs=136.1
Q ss_pred eecCCCCCeEEEEEecCCCEEE-EEECCCcEEEEECCCCeeEEEec-ccCCceEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 005096 223 NKSAHKESVRDLSFCRTDLKFC-SCSDDTTVKVWDFARCQEERSLT-GHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAK 300 (715)
Q Consensus 223 ~~~~h~~~I~~l~~spd~~~La-s~s~Dg~V~iwdl~~~~~~~~l~-~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~ 300 (715)
.+.+....+..|+|+++++.|+ +...++.|...|.. ++.++.+. ........|++..++.++++.-.++.|.++++.
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~ 99 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT 99 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence 3445566899999999776555 56778899999987 77777764 223578899999888766666567889999886
Q ss_pred CCcee---EEec------cCCCceEEEEEcCCCCEEEEEECCCeEEEEECC---CCeEEEEee-------cCCCCeEEEE
Q 005096 301 SGREL---CSFH------GHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIR---AMKELESFR-------GHRKDVTALA 361 (715)
Q Consensus 301 s~~~~---~~~~------~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~---t~~~~~~~~-------~h~~~V~~l~ 361 (715)
....+ .... ..+.....|+|+++++.|+++.......||.++ ....+..+. .....+.+|+
T Consensus 100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~ 179 (255)
T 3qqz_A 100 PNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAE 179 (255)
T ss_dssp TTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEE
T ss_pred CCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEE
Confidence 54422 2221 134457899999999888887766555555553 111122221 2345689999
Q ss_pred EccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccC---------CCEEEEEEcCCCCEEEEEECCCeEEEEec
Q 005096 362 WHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHD---------NTVWDLAWHPIGYLLCSGSNDHTTKFWCR 427 (715)
Q Consensus 362 ~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~---------~~V~~l~~spdg~~L~sgs~Dg~I~iWdl 427 (715)
+++..+++++....+..|.++|.... ......-.. ..-..|+|.++|+ |+..++-+.+++|+.
T Consensus 180 ~dp~tg~lliLS~~s~~L~~~d~~g~--~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~-lyIvsE~n~~y~f~~ 251 (255)
T 3qqz_A 180 FNQQKNTLLVLSHESRALQEVTLVGE--VIGEMSLTKGSRGLSHNIKQAEGVAMDASGN-IYIVSEPNRFYRFTP 251 (255)
T ss_dssp EETTTTEEEEEETTTTEEEEECTTCC--EEEEEECSTTGGGCSSCCCSEEEEEECTTCC-EEEEETTTEEEEEEC
T ss_pred EcCCCCeEEEEECCCCeEEEEcCCCC--EEEEEEcCCccCCcccccCCCCeeEECCCCC-EEEEcCCceEEEEEe
Confidence 99988888888888888999987654 223222111 2568999999998 455577776655543
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.64 E-value=8.6e-06 Score=89.52 Aligned_cols=236 Identities=10% Similarity=0.081 Sum_probs=142.5
Q ss_pred ccEEEEEEcCC--CCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCC----c-EEEEeCCC
Q 005096 145 CSINRVLWTPT--GRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGG----A-IKYWQNNM 217 (715)
Q Consensus 145 ~~I~~l~~spd--g~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg----~-I~iwd~~~ 217 (715)
..-..|+|+++ +..|+++...+.|+.+|..+++..... ........|+|+++++ |++++..+ . +..++...
T Consensus 139 ~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~-~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~ 216 (433)
T 4hw6_A 139 DNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKT-TNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRAS 216 (433)
T ss_dssp SCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEEC-CCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGG
T ss_pred CCCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEee-cCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCC
Confidence 34678999984 455666655588999999877665544 3455689999999999 54444321 1 33333221
Q ss_pred Cce-eeeecCCCCCeEEEEEec-CCCEEEEEECCCcEEEEECCCCeeEEEe-cc-cCCceEEEEEcCCCCEEEEE-eCCC
Q 005096 218 NNV-KANKSAHKESVRDLSFCR-TDLKFCSCSDDTTVKVWDFARCQEERSL-TG-HGWDVKSVDWHPTKSLLVSG-GKDS 292 (715)
Q Consensus 218 ~~~-~~~~~~h~~~I~~l~~sp-d~~~Las~s~Dg~V~iwdl~~~~~~~~l-~~-~~~~I~si~~spdg~~L~sg-s~Dg 292 (715)
... ...+. .......+++.+ ++.++++-..++.|+.+|..++.....+ .. ....-..|+|++++++|+++ ..++
T Consensus 217 ~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~ 295 (433)
T 4hw6_A 217 GFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKH 295 (433)
T ss_dssp TTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTT
T ss_pred Ceecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCC
Confidence 111 01111 234456788888 5665555556788999998866552222 21 12223469999999955555 4567
Q ss_pred cEEEEECC--CCce--eEEeccC---------------CCceEEEEE---------cCCCCEEEEEECCCeEEEEECCCC
Q 005096 293 LVKLWDAK--SGRE--LCSFHGH---------------KNMVLCVKW---------NQNGNWVLTASKDQIIKLYDIRAM 344 (715)
Q Consensus 293 ~I~iwDl~--s~~~--~~~~~~~---------------~~~I~sl~~---------spdg~~Lasgs~dg~I~iwDl~t~ 344 (715)
.|+.+|++ +++. ...+.+. -..-..+++ ..+++++++-...+.|+.+|. ++
T Consensus 296 ~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G 374 (433)
T 4hw6_A 296 CIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EG 374 (433)
T ss_dssp EEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TS
T ss_pred EEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CC
Confidence 89998865 2321 1122111 123567888 666766666666788999985 46
Q ss_pred eEEEEeecC------------------CCCeEEEEEccCCCCEEEEEeCCCcEEEEEcC
Q 005096 345 KELESFRGH------------------RKDVTALAWHPFHEEYFVSGSLDGSIFHWLVG 385 (715)
Q Consensus 345 ~~~~~~~~h------------------~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~ 385 (715)
... ++.+. -.....|++++.++.++++-..+++|+.++++
T Consensus 375 ~v~-t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 375 RVT-TYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp EEE-EEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred CEE-EEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 443 33221 12356788884366666666666777777653
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.64 E-value=7.2e-06 Score=90.07 Aligned_cols=236 Identities=10% Similarity=0.061 Sum_probs=144.0
Q ss_pred CEEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECC-C----cEEEEECCCCe
Q 005096 188 AIRSMVWSH-NDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDD-T----TVKVWDFARCQ 261 (715)
Q Consensus 188 ~V~~l~~sp-dg~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~D-g----~V~iwdl~~~~ 261 (715)
....|+|++ ++..|+++...+.|+.+|++.+.+..... .......|+|++++++|+++... + .+.+++.. +.
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~-~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~-g~ 215 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS-GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRE-SG 215 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC-CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGG-GT
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec-CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCC-Cc
Confidence 456889997 45667666666889999988776554433 45668899999999977666652 2 23334432 21
Q ss_pred eE--EEecccCCceEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeEEec-cCCCceEEEEEcCCCCEEEEEE-CCCeE
Q 005096 262 EE--RSLTGHGWDVKSVDWHP-TKSLLVSGGKDSLVKLWDAKSGRELCSFH-GHKNMVLCVKWNQNGNWVLTAS-KDQII 336 (715)
Q Consensus 262 ~~--~~l~~~~~~I~si~~sp-dg~~L~sgs~Dg~I~iwDl~s~~~~~~~~-~~~~~I~sl~~spdg~~Lasgs-~dg~I 336 (715)
.. ..+. .......+++++ ++.++++-..++.|..||..++....... ........|+|++++++|+++. .++.|
T Consensus 216 ~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I 294 (430)
T 3tc9_A 216 FKVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYI 294 (430)
T ss_dssp SCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEE
T ss_pred eeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEE
Confidence 11 2222 234467889999 66666666677899999998665422222 2234578999999999666554 56789
Q ss_pred EEEECCC--CeE--EEEeecC---------------CCCeE-EEEEcc-------CCCCEEEEEeCCCcEEEEEcCCCCc
Q 005096 337 KLYDIRA--MKE--LESFRGH---------------RKDVT-ALAWHP-------FHEEYFVSGSLDGSIFHWLVGHETP 389 (715)
Q Consensus 337 ~iwDl~t--~~~--~~~~~~h---------------~~~V~-~l~~sp-------~~~~~l~sgs~DG~I~iwd~~~~~~ 389 (715)
.++|... ++. +..+.+. -..-. .+++.. .++.++++-...++|+.++. .+ .
T Consensus 295 ~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~-~G-~ 372 (430)
T 3tc9_A 295 LRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTP-QG-R 372 (430)
T ss_dssp EEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEECT-TS-E
T ss_pred EEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEECC-CC-c
Confidence 9987653 222 1222211 01122 455432 13455565556677888873 22 2
Q ss_pred eEEEeec-----------------cCCCEEEEEEcCC-CCEEEEEECCCeEEEEecC
Q 005096 390 QVEIHNV-----------------HDNTVWDLAWHPI-GYLLCSGSNDHTTKFWCRN 428 (715)
Q Consensus 390 ~~~~~~~-----------------h~~~V~~l~~spd-g~~L~sgs~Dg~I~iWdl~ 428 (715)
+..+... .-..-+.|+++++ +.++++-..++.|+.++++
T Consensus 373 v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 373 VTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp EEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 2222211 0125789999984 6666666677888888764
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=98.62 E-value=4.9e-05 Score=82.56 Aligned_cols=228 Identities=7% Similarity=-0.033 Sum_probs=147.0
Q ss_pred CEEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEE-CCCcEEEEECCCC----eeEEEecccCCce
Q 005096 199 NWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCS-DDTTVKVWDFARC----QEERSLTGHGWDV 273 (715)
Q Consensus 199 ~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s-~Dg~V~iwdl~~~----~~~~~l~~~~~~I 273 (715)
.+|+.+. ...|+..+++........ .....+..|+|+..+..|+.+. .++.|+.++++.. .....+.......
T Consensus 84 ~~ll~~~-~~~I~~i~l~~~~~~~~~-~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p 161 (400)
T 3p5b_L 84 AYLFFTN-RHEVRKMTLDRSEYTSLI-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP 161 (400)
T ss_dssp CEEEEEE-TTEEEEECTTSCSCEEEE-CSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCE
T ss_pred ceeEEec-cceeEEEccCCcceeEec-cccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCc
Confidence 3444444 467888888876554443 3456788999998766666655 4678999998652 2333333344567
Q ss_pred EEEEEcCCCC-EEEEEeCCCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEEC--CCeEEEEECCCCeEEEEe
Q 005096 274 KSVDWHPTKS-LLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASK--DQIIKLYDIRAMKELESF 350 (715)
Q Consensus 274 ~si~~spdg~-~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~--dg~I~iwDl~t~~~~~~~ 350 (715)
..|+++..+. ++++-...+.|.+.|++.......+.........|++++.+.+|+.... .+.|...++........+
T Consensus 162 ~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~ 241 (400)
T 3p5b_L 162 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV 241 (400)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEE
T ss_pred ccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEE
Confidence 8899987444 5555556788999998865544444444556889999997777776653 368999998744333333
Q ss_pred ecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEee-ccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCC
Q 005096 351 RGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHN-VHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNR 429 (715)
Q Consensus 351 ~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~-~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~ 429 (715)
...-.....|++++.+++++++-...+.|..+|++.......+.. ........|++. .+.++++-...+.|..++...
T Consensus 242 ~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~ 320 (400)
T 3p5b_L 242 TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLT 320 (400)
T ss_dssp CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSS
T ss_pred ECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCC
Confidence 334467899999985666666666778899999865443322221 122455677774 345566666677888887543
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.59 E-value=1.5e-05 Score=87.56 Aligned_cols=235 Identities=11% Similarity=0.107 Sum_probs=145.0
Q ss_pred CEEEEEEcCC--CCEEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCC-----cEEEEECCCC
Q 005096 188 AIRSMVWSHN--DNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDT-----TVKVWDFARC 260 (715)
Q Consensus 188 ~V~~l~~spd--g~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg-----~V~iwdl~~~ 260 (715)
....|+|+++ +..|+++...+.|+.+|..++.+.... .......+|+++++++ |+++...+ .+..++....
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~-~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~ 217 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKT-TNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASG 217 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEEC-CCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGT
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEee-cCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCC
Confidence 3568999984 556666665589999999877665543 3455689999999999 55554322 1333332211
Q ss_pred ee-EEEecccCCceEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeEEe-c-cCCCceEEEEEcCCCCEEEEEE-CCCe
Q 005096 261 QE-ERSLTGHGWDVKSVDWHP-TKSLLVSGGKDSLVKLWDAKSGRELCSF-H-GHKNMVLCVKWNQNGNWVLTAS-KDQI 335 (715)
Q Consensus 261 ~~-~~~l~~~~~~I~si~~sp-dg~~L~sgs~Dg~I~iwDl~s~~~~~~~-~-~~~~~I~sl~~spdg~~Lasgs-~dg~ 335 (715)
.. ...+. .......+++++ +++++++-..++.|+.+|..+++....+ . .....-..|+|++++++|+++. ..+.
T Consensus 218 ~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~ 296 (433)
T 4hw6_A 218 FTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHC 296 (433)
T ss_dssp TCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTE
T ss_pred eecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCE
Confidence 11 11121 234456788999 6666666556788999999877652222 2 1223345799999999666655 5678
Q ss_pred EEEEECC--CCeE--EEEeecC---------------CCCeEEEEE---------ccCCCCEEEEEeCCCcEEEEEcCCC
Q 005096 336 IKLYDIR--AMKE--LESFRGH---------------RKDVTALAW---------HPFHEEYFVSGSLDGSIFHWLVGHE 387 (715)
Q Consensus 336 I~iwDl~--t~~~--~~~~~~h---------------~~~V~~l~~---------sp~~~~~l~sgs~DG~I~iwd~~~~ 387 (715)
|+.+|+. ++.. ...+.+. -.....+++ .. +++++++-...++|+.++. ++
T Consensus 297 I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~-~g~lyvaD~~n~~I~~~~~-~G 374 (433)
T 4hw6_A 297 IYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEED-EYDFYFCDRDSHTVRVLTP-EG 374 (433)
T ss_dssp EEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSC-CEEEEEEETTTTEEEEECT-TS
T ss_pred EEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCC-CCcEEEEECCCCEEEEECC-CC
Confidence 9998865 2321 1222211 123566888 44 6667777667788888874 22
Q ss_pred CceEEEeec-----------------cCCCEEEEEEc-CCCCEEEEEECCCeEEEEecC
Q 005096 388 TPQVEIHNV-----------------HDNTVWDLAWH-PIGYLLCSGSNDHTTKFWCRN 428 (715)
Q Consensus 388 ~~~~~~~~~-----------------h~~~V~~l~~s-pdg~~L~sgs~Dg~I~iWdl~ 428 (715)
.+..+... .-.....|+++ .++.++++-..++.|+.++++
T Consensus 375 -~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 375 -RVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp -EEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred -CEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 22222211 01246789999 677777777778889888774
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.58 E-value=5.6e-05 Score=88.98 Aligned_cols=232 Identities=10% Similarity=-0.014 Sum_probs=147.5
Q ss_pred EEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEE-EEeCCCcEEEEeCCCC----ceeeeecCCCCCeE
Q 005096 158 RLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMV-SGDDGGAIKYWQNNMN----NVKANKSAHKESVR 232 (715)
Q Consensus 158 ~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~-tgs~dg~I~iwd~~~~----~~~~~~~~h~~~I~ 232 (715)
+|+.+. ...|+..++...+....+. ....+..|+|...+..|+ +-...+.|+.++++.. .....+........
T Consensus 397 ~Ll~an-~~~Ir~i~l~~~~~~~l~~-~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~ 474 (791)
T 3m0c_C 397 YLFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 474 (791)
T ss_dssp EEEEEC-BSSEEEECTTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred cccccc-ccceeEeeccCCcceeeec-CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcc
Confidence 444443 4568888888766555544 356678999998665555 4455678888888753 22333333445677
Q ss_pred EEEEecCCCEEEEE-ECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeC--CCcEEEEECCCCceeEEec
Q 005096 233 DLSFCRTDLKFCSC-SDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGK--DSLVKLWDAKSGRELCSFH 309 (715)
Q Consensus 233 ~l~~spd~~~Las~-s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~--Dg~I~iwDl~s~~~~~~~~ 309 (715)
.|++...+..|+.+ ...+.|.+.+++.......+.........|++++.+.+|+.+.. .+.|.+.+++.......+.
T Consensus 475 GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~ 554 (791)
T 3m0c_C 475 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT 554 (791)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEEC
T ss_pred eeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEe
Confidence 89998877655554 45789999999765544444445556889999998776666653 2678889987554444444
Q ss_pred cCCCceEEEEEcCCCCEEEEEE-CCCeEEEEECCCCeEEEEeec--CCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCC
Q 005096 310 GHKNMVLCVKWNQNGNWVLTAS-KDQIIKLYDIRAMKELESFRG--HRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGH 386 (715)
Q Consensus 310 ~~~~~I~sl~~spdg~~Lasgs-~dg~I~iwDl~t~~~~~~~~~--h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~ 386 (715)
..-.....|++++.+..|+.+. ....|..+|+........+.. .-....+|++. ++.++++-...+.|...+..+
T Consensus 555 ~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~--~~~lYwtD~~~~~I~~~dk~t 632 (791)
T 3m0c_C 555 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLT 632 (791)
T ss_dssp SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTT
T ss_pred CCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEe--CCEEEEEECCCCEEEEEeCCC
Confidence 4446789999998777777665 456899999864433333332 22344566663 445555655667777777655
Q ss_pred CCceEEE
Q 005096 387 ETPQVEI 393 (715)
Q Consensus 387 ~~~~~~~ 393 (715)
+.....+
T Consensus 633 G~~~~~l 639 (791)
T 3m0c_C 633 GSDVNLL 639 (791)
T ss_dssp CCCCEEE
T ss_pred CcceEEe
Confidence 5444333
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=98.54 E-value=4.7e-05 Score=79.98 Aligned_cols=228 Identities=6% Similarity=-0.011 Sum_probs=143.8
Q ss_pred EEEEEeCCCcEEEEeCCCCc-eeeeecCCCCCeEEEEEecCCCEEEEE-ECCCcEEEEECCCCee-EEEecccCCceEEE
Q 005096 200 WMVSGDDGGAIKYWQNNMNN-VKANKSAHKESVRDLSFCRTDLKFCSC-SDDTTVKVWDFARCQE-ERSLTGHGWDVKSV 276 (715)
Q Consensus 200 ~L~tgs~dg~I~iwd~~~~~-~~~~~~~h~~~I~~l~~spd~~~Las~-s~Dg~V~iwdl~~~~~-~~~l~~~~~~I~si 276 (715)
+|+.+. ...|+.++++... ...........+..++|...+..|+.+ ..++.|..++++.... ...+.........+
T Consensus 6 ~ll~~~-~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~gl 84 (318)
T 3sov_A 6 LLLYAN-RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGL 84 (318)
T ss_dssp EEEEEC-EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEE
T ss_pred EEEEEc-cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEE
Confidence 344433 4678888887753 111111223456788998866555554 4567899999876532 12222233456788
Q ss_pred EEcCCCC-EEEEEeCCCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEEC--CCeEEEEECCCCeEEEEe-ec
Q 005096 277 DWHPTKS-LLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASK--DQIIKLYDIRAMKELESF-RG 352 (715)
Q Consensus 277 ~~spdg~-~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~--dg~I~iwDl~t~~~~~~~-~~ 352 (715)
+++..+. ++++-...+.|.+++++.......+.........|++.+.+.+|+.+.. .+.|..+++.. +....+ ..
T Consensus 85 avd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG-~~~~~~~~~ 163 (318)
T 3sov_A 85 ACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDG-SSRFIIINS 163 (318)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTS-CSCEEEECS
T ss_pred EEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCC-CCeEEEEEC
Confidence 8886554 4455556778999998754433334344556789999987777776663 57898888863 333333 33
Q ss_pred CCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCCCC
Q 005096 353 HRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPG 431 (715)
Q Consensus 353 h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~ 431 (715)
.-..-+.|+++++++.++++-+..+.|..+|++..... .+..........+++.. +.++++-...+.|..++.....
T Consensus 164 ~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~-~~~~~~~~~P~glav~~-~~lywtd~~~~~V~~~~~~~G~ 240 (318)
T 3sov_A 164 EIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQ-AVVKGSLPHPFALTLFE-DILYWTDWSTHSILACNKYTGE 240 (318)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-EEECSCCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCC
T ss_pred CCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceE-EEecCCCCCceEEEEeC-CEEEEEecCCCeEEEEECCCCC
Confidence 34567899999866667777777788999998754332 23332345667888763 4555665667888888875443
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=98.50 E-value=1.7e-06 Score=100.49 Aligned_cols=239 Identities=9% Similarity=0.023 Sum_probs=136.6
Q ss_pred EEEEcC-CCCEEEEEeCCC-----------cEEEEeCCCCceeee--e-cCCCCCeEEEEEecCCCEEEEEEC-CCcEEE
Q 005096 191 SMVWSH-NDNWMVSGDDGG-----------AIKYWQNNMNNVKAN--K-SAHKESVRDLSFCRTDLKFCSCSD-DTTVKV 254 (715)
Q Consensus 191 ~l~~sp-dg~~L~tgs~dg-----------~I~iwd~~~~~~~~~--~-~~h~~~I~~l~~spd~~~Las~s~-Dg~V~i 254 (715)
++++.+ ++++++.|+.+. .+.+||..+++.... + ..+.....++++..+++++++|+. +..+.+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~ 269 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 269 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence 556666 788888887543 588999887753322 1 122333445777789999998884 568999
Q ss_pred EECCCCeeEEEeccc-CCceEEEEEcCCCCEEEEEe-CC-----CcEEEEECCCCceeEEe----ccCCCceEEEEEcCC
Q 005096 255 WDFARCQEERSLTGH-GWDVKSVDWHPTKSLLVSGG-KD-----SLVKLWDAKSGRELCSF----HGHKNMVLCVKWNQN 323 (715)
Q Consensus 255 wdl~~~~~~~~l~~~-~~~I~si~~spdg~~L~sgs-~D-----g~I~iwDl~s~~~~~~~----~~~~~~I~sl~~spd 323 (715)
||..+.+-...-... ...-.++++.++++++++|+ .+ ..+.+||..+.+-...- ......-....+..+
T Consensus 270 yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~~ 349 (656)
T 1k3i_A 270 YDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSD 349 (656)
T ss_dssp EEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTT
T ss_pred ecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeecC
Confidence 998766433221111 11223556667899999988 34 56999999876533220 000000000122234
Q ss_pred CCEEEEEECC---------CeEEEEECCCCeEEEEeecCC---------CCeEEEEEccCCCCEEEEEeCCC--------
Q 005096 324 GNWVLTASKD---------QIIKLYDIRAMKELESFRGHR---------KDVTALAWHPFHEEYFVSGSLDG-------- 377 (715)
Q Consensus 324 g~~Lasgs~d---------g~I~iwDl~t~~~~~~~~~h~---------~~V~~l~~sp~~~~~l~sgs~DG-------- 377 (715)
++.++.++.+ ..|.+||..+........... ..-.++.+...++++++.|+.++
T Consensus 350 ~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~ 429 (656)
T 1k3i_A 350 NHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATT 429 (656)
T ss_dssp CSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCC
T ss_pred CceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCC
Confidence 5555555444 357788887765433322211 12344555444778888887532
Q ss_pred ---cEEEEEcCCCCceEEE-eeccCCCE-EEEEEcCCCCEEEEEECC-----------CeEEEEecCC
Q 005096 378 ---SIFHWLVGHETPQVEI-HNVHDNTV-WDLAWHPIGYLLCSGSND-----------HTTKFWCRNR 429 (715)
Q Consensus 378 ---~I~iwd~~~~~~~~~~-~~~h~~~V-~~l~~spdg~~L~sgs~D-----------g~I~iWdl~~ 429 (715)
.|.+||..+....... ........ .+++..++++++++|+.+ ..+.+||...
T Consensus 430 ~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t 497 (656)
T 1k3i_A 430 NAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQ 497 (656)
T ss_dssp CEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGG
T ss_pred cceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCC
Confidence 5677777655432211 01122222 344567799999999865 4578888743
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=98.49 E-value=0.00043 Score=79.44 Aligned_cols=282 Identities=7% Similarity=-0.038 Sum_probs=152.9
Q ss_pred ccEEEEEEcCCCCEEEEE-eCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeC--CCcEEEEeCCCCcee
Q 005096 145 CSINRVLWTPTGRRLITG-SQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDD--GGAIKYWQNNMNNVK 221 (715)
Q Consensus 145 ~~I~~l~~spdg~~Latg-s~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~--dg~I~iwd~~~~~~~ 221 (715)
.....|++...++.|+.+ ..++.|.+.+++.......+...-.....|++.+.+.+|+.++. .+.|...+++.....
T Consensus 84 ~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~ 163 (619)
T 3s94_A 84 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRF 163 (619)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCE
T ss_pred CCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceE
Confidence 568899999866666655 45788999998765544444344455778999987666666553 356766676654444
Q ss_pred eeecCCCCCeEEEEEecCCCEEEEEE-CCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 005096 222 ANKSAHKESVRDLSFCRTDLKFCSCS-DDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAK 300 (715)
Q Consensus 222 ~~~~~h~~~I~~l~~spd~~~Las~s-~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~ 300 (715)
......-.....|++++++..|+.+. ..+.|..+|++.......+.........|++..+ .++++-..++.|...|..
T Consensus 164 ~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~ 242 (619)
T 3s94_A 164 IIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILACNKY 242 (619)
T ss_dssp EEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSS-EEEEECTTTCSEEEEESS
T ss_pred EEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC-EEEEecCCCCEEEEEECC
Confidence 33333455678999998777776665 4567888887653332222211112234444432 222222233444444443
Q ss_pred CCceeEEec-----------------------------------------------------------------------
Q 005096 301 SGRELCSFH----------------------------------------------------------------------- 309 (715)
Q Consensus 301 s~~~~~~~~----------------------------------------------------------------------- 309 (715)
+++.+..+.
T Consensus 243 tg~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~~Ll~ 322 (619)
T 3s94_A 243 TGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLLL 322 (619)
T ss_dssp SCCCCEECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSCSEEEEE
T ss_pred CCcccEEEecCCCCCcEEEEEccccCCCccccccCCCCcccceEECCCCCCCceEeCCchheecccCcccCCCCceEEEE
Confidence 332211110
Q ss_pred -----------------------cCCCceEEEEEcCCCCEEEEEE-CCCeEEEEECCCCeEEEEeecCCCCeEEEEEccC
Q 005096 310 -----------------------GHKNMVLCVKWNQNGNWVLTAS-KDQIIKLYDIRAMKELESFRGHRKDVTALAWHPF 365 (715)
Q Consensus 310 -----------------------~~~~~I~sl~~spdg~~Lasgs-~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~ 365 (715)
..-..+..|+|++.+..|+.+. ..+.|+.+++........+.........|++...
T Consensus 323 ~~~~~i~~i~l~~~~~~~~~~~~~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~ 402 (619)
T 3s94_A 323 ARRTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWV 402 (619)
T ss_dssp EESSCEEEEESSSTTCCCEECCCSCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETT
T ss_pred EcccceEEEecCCCccceeEEeccccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecc
Confidence 0001123344444333333322 2344444444432222222222345678888765
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEEC--CCeEEEEecC
Q 005096 366 HEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSN--DHTTKFWCRN 428 (715)
Q Consensus 366 ~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~--Dg~I~iWdl~ 428 (715)
+++++++-+..+.|.+.+++..... .+....-....+|++.+...+|+.+.. ...|...+++
T Consensus 403 ~~~lY~tD~~~~~I~v~~~~G~~~~-~l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~d 466 (619)
T 3s94_A 403 ARNLYWTDTGTDRIEVTRLNGTMRK-ILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALD 466 (619)
T ss_dssp TTEEEEEETTTTEEEEEETTSCSCE-EEECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETT
T ss_pred cCcEEEEeCCCCcEEEEeCCCCeEE-EEEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccC
Confidence 6777777777889999998765432 333333457889999997445544443 2455555543
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=0.00041 Score=79.59 Aligned_cols=202 Identities=4% Similarity=-0.098 Sum_probs=125.2
Q ss_pred ccEEEEEEcCCCCEEEEEeC-CCeEEEEeCCCCce-EEEEeccCCCEEEEEEcCCCCEE-EEEeCCCcEEEEeCCCCcee
Q 005096 145 CSINRVLWTPTGRRLITGSQ-SGEFTLWNGQSFNF-EMILQAHDHAIRSMVWSHNDNWM-VSGDDGGAIKYWQNNMNNVK 221 (715)
Q Consensus 145 ~~I~~l~~spdg~~Latgs~-dg~I~Iwd~~~~~~-~~~l~~h~~~V~~l~~spdg~~L-~tgs~dg~I~iwd~~~~~~~ 221 (715)
.....|+|++.+..|+.+.. .+.|..++++.... ...+...-.....|++...++.| ++-...+.|.+.+++.....
T Consensus 40 ~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~ 119 (619)
T 3s94_A 40 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRK 119 (619)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred CceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEE
Confidence 45778999987777776654 67888898876532 33344333678899999866555 45556789999998865544
Q ss_pred eeecCCCCCeEEEEEecCCCEEEEEEC--CCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEe-CCCcEEEEE
Q 005096 222 ANKSAHKESVRDLSFCRTDLKFCSCSD--DTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGG-KDSLVKLWD 298 (715)
Q Consensus 222 ~~~~~h~~~I~~l~~spd~~~Las~s~--Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs-~Dg~I~iwD 298 (715)
..+...-.....|++.+.+.+|+.+.. .+.|...+++.......+.........|+++++++.|+.+. ..+.|..+|
T Consensus 120 ~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~ 199 (619)
T 3s94_A 120 VLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSN 199 (619)
T ss_dssp EEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEES
T ss_pred EEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEec
Confidence 443344556788999987777766654 35777777754433333333445678999998776666554 456788888
Q ss_pred CCCCceeEEeccCCCceEEEEEcCCCCEEEEEE-CCCeEEEEECCCCeEEE
Q 005096 299 AKSGRELCSFHGHKNMVLCVKWNQNGNWVLTAS-KDQIIKLYDIRAMKELE 348 (715)
Q Consensus 299 l~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs-~dg~I~iwDl~t~~~~~ 348 (715)
++.......+.........|++..+ .|+.+. .++.|...|..+++.+.
T Consensus 200 ~dG~~~~~~~~~~~~~P~gi~~~~~--~ly~td~~~~~V~~~d~~tg~~~~ 248 (619)
T 3s94_A 200 LDGTNRQAVVKGSLPHPFALTLFED--ILYWTDWSTHSILACNKYTGEGLR 248 (619)
T ss_dssp SSCCEEC---------CCCEEESSS--EEEEECTTTCSEEEEESSSCCCCE
T ss_pred CCCCccEEEEeCCCCCceEEEEeCC--EEEEecCCCCEEEEEECCCCcccE
Confidence 8754332222212222346676544 455444 56788888987765433
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.43 E-value=4.4e-05 Score=84.48 Aligned_cols=241 Identities=13% Similarity=0.131 Sum_probs=143.0
Q ss_pred cEEEEEEcC-CCCEEEEE-eCCCeEEEEeCCCCceEEEEecc---CCCEEEEEE-------cCCCCEEEEEeCCC-----
Q 005096 146 SINRVLWTP-TGRRLITG-SQSGEFTLWNGQSFNFEMILQAH---DHAIRSMVW-------SHNDNWMVSGDDGG----- 208 (715)
Q Consensus 146 ~I~~l~~sp-dg~~Latg-s~dg~I~Iwd~~~~~~~~~l~~h---~~~V~~l~~-------spdg~~L~tgs~dg----- 208 (715)
.-..|+|+| +...|+++ ...+.|++.|++++.+...+... ......|+| +.++++|+++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 356899998 34445554 44567999999887777665432 235899999 99999776666554
Q ss_pred --cEEEEeCCC-Ccee-----eeecCCCCCeEEEEEecCCCE-EEEEECCCcEEEEECC-------CCee----------
Q 005096 209 --AIKYWQNNM-NNVK-----ANKSAHKESVRDLSFCRTDLK-FCSCSDDTTVKVWDFA-------RCQE---------- 262 (715)
Q Consensus 209 --~I~iwd~~~-~~~~-----~~~~~h~~~I~~l~~spd~~~-Las~s~Dg~V~iwdl~-------~~~~---------- 262 (715)
.|.+++... +... ..+. .......+++++++.. +++-..++.|..+|+. ++..
T Consensus 220 ~~~V~~i~r~~~G~~~~~~~~~~v~-~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g 298 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRSDIQLIA-AYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN 298 (496)
T ss_dssp EEEEEEEECCTTSCCSTTSCEEEEE-EESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTT
T ss_pred CceEEEEecCCCCceeecccceeec-cCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccc
Confidence 256665443 2221 1221 1234567888985544 4555567889999987 4443
Q ss_pred -EEE-ec-ccCCceEEEEEcCCCCEEEEE-eCCCcEEEEECC--CCce--eEEeccC---C------------CceE-EE
Q 005096 263 -ERS-LT-GHGWDVKSVDWHPTKSLLVSG-GKDSLVKLWDAK--SGRE--LCSFHGH---K------------NMVL-CV 318 (715)
Q Consensus 263 -~~~-l~-~~~~~I~si~~spdg~~L~sg-s~Dg~I~iwDl~--s~~~--~~~~~~~---~------------~~I~-sl 318 (715)
... +. .....-..|+|++++++|+++ +....|+.+|.. ++.. ...+.+. . ..-. .+
T Consensus 299 ~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv 378 (496)
T 3kya_A 299 TFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGV 378 (496)
T ss_dssp TEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEE
T ss_pred ccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEE
Confidence 111 21 223446799999999965555 456788886653 3321 1222211 0 1233 44
Q ss_pred EEc-------CCCCEEEEEECCCeEEEEECCCCeEEEEeecC------------------------CCCeEEEEEccCCC
Q 005096 319 KWN-------QNGNWVLTASKDQIIKLYDIRAMKELESFRGH------------------------RKDVTALAWHPFHE 367 (715)
Q Consensus 319 ~~s-------pdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h------------------------~~~V~~l~~sp~~~ 367 (715)
+.. .+++++++=..+.+|+.+| .++. +.++.+. -.....|+++++++
T Consensus 379 ~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g 456 (496)
T 3kya_A 379 FVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKE 456 (496)
T ss_dssp EEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTT
T ss_pred EEccccccccCCCeEEEEECCCCEEEEEe-CCCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCC
Confidence 443 4556555555678899998 4553 4444322 01256788877336
Q ss_pred CEEEEEeCCCcEEEEEcCCCCc
Q 005096 368 EYFVSGSLDGSIFHWLVGHETP 389 (715)
Q Consensus 368 ~~l~sgs~DG~I~iwd~~~~~~ 389 (715)
.++++-..+.+|+.++++....
T Consensus 457 ~lyVaD~~N~rIrki~~~~~~~ 478 (496)
T 3kya_A 457 MFYVHDQVGHTIRTISMEQEEN 478 (496)
T ss_dssp EEEEEETTTTEEEEEEECCCC-
T ss_pred EEEEEeCCCCEEEEEECCCCcc
Confidence 6666666677788887765543
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.42 E-value=0.0002 Score=84.22 Aligned_cols=227 Identities=7% Similarity=-0.032 Sum_probs=142.4
Q ss_pred EEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEE-CCCcEEEEECCCC----eeEEEecccCCceE
Q 005096 200 WMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCS-DDTTVKVWDFARC----QEERSLTGHGWDVK 274 (715)
Q Consensus 200 ~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s-~Dg~V~iwdl~~~----~~~~~l~~~~~~I~ 274 (715)
+|+.+ ....|+..++........+ .....+..|+|...+..|+.+. ..+.|+.+++... .....+........
T Consensus 397 ~Ll~a-n~~~Ir~i~l~~~~~~~l~-~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~ 474 (791)
T 3m0c_C 397 YLFFT-NRHEVRKMTLDRSEYTSLI-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 474 (791)
T ss_dssp EEEEE-CBSSEEEECTTSCCCEEEE-CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred ccccc-cccceeEeeccCCcceeee-cCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcc
Confidence 44444 3456888888766544433 3456678999998666655554 4678999998653 22333443445677
Q ss_pred EEEEcCCCCEEE-EEeCCCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEEC--CCeEEEEECCCCeEEEEee
Q 005096 275 SVDWHPTKSLLV-SGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASK--DQIIKLYDIRAMKELESFR 351 (715)
Q Consensus 275 si~~spdg~~L~-sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~--dg~I~iwDl~t~~~~~~~~ 351 (715)
.|+++..++.|+ +-...+.|.+.+++.......+.........|++++...+|+.+.. .+.|.+.++........+.
T Consensus 475 GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~ 554 (791)
T 3m0c_C 475 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT 554 (791)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEEC
T ss_pred eeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEe
Confidence 899987775454 4456788999999855444444444556889999998777776653 2689999987544444444
Q ss_pred cCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEee-ccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCC
Q 005096 352 GHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHN-VHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNR 429 (715)
Q Consensus 352 ~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~-~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~ 429 (715)
..-.....|++++.+++++++-...+.|..++++.......+.. ..-.....|++.. ++++++-...+.|...+...
T Consensus 555 ~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~-~~lYwtD~~~~~I~~~dk~t 632 (791)
T 3m0c_C 555 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-DKVFWTDIINEAIFSANRLT 632 (791)
T ss_dssp SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEET-TEEEEEETTTTEEEEEETTT
T ss_pred CCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeC-CEEEEEECCCCEEEEEeCCC
Confidence 44467899999985666666666677899999865544333221 1123455777643 34444444567777666533
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=98.40 E-value=6.6e-05 Score=78.89 Aligned_cols=192 Identities=9% Similarity=0.143 Sum_probs=129.2
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCC----CC---EEEEEeC---CCcEEEEeCC--CCceee
Q 005096 155 TGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHN----DN---WMVSGDD---GGAIKYWQNN--MNNVKA 222 (715)
Q Consensus 155 dg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spd----g~---~L~tgs~---dg~I~iwd~~--~~~~~~ 222 (715)
...+++....++-|.+||+ +++.+..+.. +.++.+.+-++ ++ ++++... +++|++|+++ ++.+ .
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l-~ 114 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTL-Q 114 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCE-E
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCce-e
Confidence 3456777777888999999 7888888754 56777666552 22 3333333 5789999773 4432 2
Q ss_pred eecC------CC-CCeEEEEE--ecC-CC-EEEEEECCCcEEEEECC-------CCeeEEEecccCCceEEEEEcCCCCE
Q 005096 223 NKSA------HK-ESVRDLSF--CRT-DL-KFCSCSDDTTVKVWDFA-------RCQEERSLTGHGWDVKSVDWHPTKSL 284 (715)
Q Consensus 223 ~~~~------h~-~~I~~l~~--spd-~~-~Las~s~Dg~V~iwdl~-------~~~~~~~l~~~~~~I~si~~spdg~~ 284 (715)
.+.. .. ..+..+|+ ++. +. ++++...+|.+..|++. +.+.++++.. ...+..+.+++....
T Consensus 115 ~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~~g~ 193 (355)
T 3amr_A 115 SMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDEYGR 193 (355)
T ss_dssp ECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETTTTE
T ss_pred eccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCCCCe
Confidence 2211 11 56677887 553 43 67888889999999982 3355666663 457889999988889
Q ss_pred EEEEeCCCcEEEEECC-----CCceeEEec--cCCCceEEEEE--cCCCC-EEEEEE-CCCeEEEEECC-CCeEEEEee
Q 005096 285 LVSGGKDSLVKLWDAK-----SGRELCSFH--GHKNMVLCVKW--NQNGN-WVLTAS-KDQIIKLYDIR-AMKELESFR 351 (715)
Q Consensus 285 L~sgs~Dg~I~iwDl~-----s~~~~~~~~--~~~~~I~sl~~--spdg~-~Lasgs-~dg~I~iwDl~-t~~~~~~~~ 351 (715)
|+++-+|.-|..||.+ +++.+..+. .....+..|++ ..+++ ||++++ .+..+.|||.. +.+.+..|.
T Consensus 194 Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f~ 272 (355)
T 3amr_A 194 LYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADFR 272 (355)
T ss_dssp EEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEE
T ss_pred EEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEEE
Confidence 9999998777777755 234454442 22346888887 45555 777776 56799999996 566666664
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=98.36 E-value=0.00052 Score=84.11 Aligned_cols=281 Identities=12% Similarity=0.073 Sum_probs=162.3
Q ss_pred CccEEEEEEcCC------CCEEEEEeC-CCeEEEEeCCCCceEEEEecc-CCCEEEEEEcC--CCCEEEEEeCCCcEEEE
Q 005096 144 RCSINRVLWTPT------GRRLITGSQ-SGEFTLWNGQSFNFEMILQAH-DHAIRSMVWSH--NDNWMVSGDDGGAIKYW 213 (715)
Q Consensus 144 ~~~I~~l~~spd------g~~Latgs~-dg~I~Iwd~~~~~~~~~l~~h-~~~V~~l~~sp--dg~~L~tgs~dg~I~iw 213 (715)
...|.|+++.+. ++++++|.. |++|+|+++.+.+.+...... +....++.+.. ...+|.+|-.||.+..+
T Consensus 553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~ 632 (1158)
T 3ei3_A 553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYF 632 (1158)
T ss_dssp SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEE
T ss_pred CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEE
Confidence 457999999863 479999997 999999999987766543321 22344444432 33578889999998766
Q ss_pred eCC--CCceeee--ecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCce-EEEEEcCC--CCEEE
Q 005096 214 QNN--MNNVKAN--KSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDV-KSVDWHPT--KSLLV 286 (715)
Q Consensus 214 d~~--~~~~~~~--~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I-~si~~spd--g~~L~ 286 (715)
.++ ++.+... ...-...+.-..+...+..-+.+..+....++.-+. +....-. ....+ ....|+.+ .+-++
T Consensus 633 ~~d~~tg~l~d~r~~~LG~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~~-~l~~s~l-~~~~v~~~~~F~se~~~~g~v 710 (1158)
T 3ei3_A 633 GLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNH-KLVFSNV-NLKEVNYMCPLNSDGYPDSLA 710 (1158)
T ss_dssp EECTTTCCEEEEEEEECCSSCCEEEEEESSSCEEEEEESSSCEEEEESSS-SEEEEEB-SSSCCCEEEEECCSSSTTEEE
T ss_pred EEcCCCCccccceeEEcCCCceEEEEEeeCCceeEEEECCCCEEEEEcCC-ceEEecc-ChHHhceEeccCcccCCCcEE
Confidence 544 3433322 112234555444544444444444455555555432 2221111 11223 23345432 23455
Q ss_pred EEeCCCcEEEEECCCCce--eEEeccCCCceEEEEEcCCCCEEEEEECC-------------------------------
Q 005096 287 SGGKDSLVKLWDAKSGRE--LCSFHGHKNMVLCVKWNQNGNWVLTASKD------------------------------- 333 (715)
Q Consensus 287 sgs~Dg~I~iwDl~s~~~--~~~~~~~~~~I~sl~~spdg~~Lasgs~d------------------------------- 333 (715)
..+ ++.++|..+.+... ++++. -...+..++++++.+.++++..+
T Consensus 711 ~~~-~~~LrI~~i~~~~~~~~~~ip-L~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 (1158)
T 3ei3_A 711 LAN-NSTLTIGTIDEIQKLHIRTVP-LYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKL 788 (1158)
T ss_dssp EEC-SSCEEEEEECCSSSEEEEEEE-CSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCCC
T ss_pred EEc-CCceEEEEecccCCeeEEEEe-CCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhccccccc
Confidence 444 45699887754322 22232 34567888888876655543311
Q ss_pred ------------------CeEEEEECCCCeEEEEeecCC-CCeEEEEE---ccCCCCEEEEEe----------CCCcEEE
Q 005096 334 ------------------QIIKLYDIRAMKELESFRGHR-KDVTALAW---HPFHEEYFVSGS----------LDGSIFH 381 (715)
Q Consensus 334 ------------------g~I~iwDl~t~~~~~~~~~h~-~~V~~l~~---sp~~~~~l~sgs----------~DG~I~i 381 (715)
+.|+++|-.+++.+..+.-.. ..+.+++. ..+...+|++|+ ..|+|++
T Consensus 789 ~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~v 868 (1158)
T 3ei3_A 789 FSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVV 868 (1158)
T ss_dssp C----------CCCEEEEEEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEE
T ss_pred ccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEE
Confidence 247788888888776665333 33555543 332357888876 3578999
Q ss_pred EEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCCCC
Q 005096 382 WLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPG 431 (715)
Q Consensus 382 wd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~ 431 (715)
|++...+.........++.|++++-- +|++|++. ..+|++|++...+
T Consensus 869 f~v~~~kL~lv~~~~v~g~v~al~~~-~g~Lla~i--g~~l~vy~l~~~~ 915 (1158)
T 3ei3_A 869 FQYSDGKLQTVAEKEVKGAVYSMVEF-NGKLLASI--NSTVRLYEWTTEK 915 (1158)
T ss_dssp EEEETTEEEEEEEEEESSCEEEEEEE-TTEEEEEE--TTEEEEEEECTTS
T ss_pred EEEECCEEEEEEEEEcCCcCEEEeee-CCEEEEEc--CCEEEEEECCCCc
Confidence 99974432222233457789998755 35444433 4799999997654
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=98.34 E-value=0.00013 Score=76.72 Aligned_cols=229 Identities=8% Similarity=0.008 Sum_probs=130.8
Q ss_pred CccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEe---ccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCce
Q 005096 144 RCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQ---AHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNV 220 (715)
Q Consensus 144 ~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~---~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~ 220 (715)
...+.+|.|++ + .+++++.++.|+.- .+.++.-..+. .+...+..|.+..+++.++++ .++.|..- .+.++.
T Consensus 79 ~~~~~~i~~~~-~-~~~~~g~~g~i~~S-~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~S-~DgG~t 153 (327)
T 2xbg_A 79 DYRFNSVSFQG-N-EGWIVGEPPIMLHT-TDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYRT-KDSGKN 153 (327)
T ss_dssp CCEEEEEEEET-T-EEEEEEETTEEEEE-SSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEEE-SSTTSS
T ss_pred CccEEEEEecC-C-eEEEEECCCeEEEE-CCCCCCceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEEE-cCCCCC
Confidence 44688999975 4 34445566755543 22233222222 233567888887676666655 45544322 222322
Q ss_pred -eeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEEC--CCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEE
Q 005096 221 -KANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDF--ARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLW 297 (715)
Q Consensus 221 -~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl--~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iw 297 (715)
..........+..+++.+++.+++++...+.++-+|- .+.+.+. ......+..+++.++++++ +++.+|.|+++
T Consensus 154 W~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~~--~~~~~~~~~~~~~~~g~~~-~~~~~G~~~~s 230 (327)
T 2xbg_A 154 WQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPHN--RTTSRRLHNMGFTPDGRLW-MIVNGGKIAFS 230 (327)
T ss_dssp EEEEECSCCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEEEE--CCSSSCEEEEEECTTSCEE-EEETTTEEEEE
T ss_pred CEEeecCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeECC--CCCCCccceeEECCCCCEE-EEeCCceEEEe
Confidence 2222344567889999998887766544443444442 2333332 2345678899999888755 45567888777
Q ss_pred ECCCCceeEEecc----CCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeec---CCCCeEEEEEccCCCCEE
Q 005096 298 DAKSGRELCSFHG----HKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRG---HRKDVTALAWHPFHEEYF 370 (715)
Q Consensus 298 Dl~s~~~~~~~~~----~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~---h~~~V~~l~~sp~~~~~l 370 (715)
+.+.++.-..+.. ....+.++++.+++.+++++ .++.| ++..+.++.-..+.. ....+.++.|.. +..+
T Consensus 231 ~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g-~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~--~~~~ 306 (327)
T 2xbg_A 231 DPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAG-GAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFS--PDQG 306 (327)
T ss_dssp ETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEE-STTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEE--TTEE
T ss_pred cCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEe-CCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEEC--CCce
Confidence 5333333222221 22358899999887766665 46766 444444544333332 345688888874 4456
Q ss_pred EEEeCCCcEEEEEc
Q 005096 371 VSGSLDGSIFHWLV 384 (715)
Q Consensus 371 ~sgs~DG~I~iwd~ 384 (715)
++++.+|.|..++-
T Consensus 307 ~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 307 FILGQKGILLRYVT 320 (327)
T ss_dssp EEECSTTEEEEECC
T ss_pred EEEcCCceEEEEcC
Confidence 67778898776654
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=98.31 E-value=0.0014 Score=75.23 Aligned_cols=227 Identities=6% Similarity=-0.052 Sum_probs=150.6
Q ss_pred EEEEEeCCCeEEEEeCCCCceEEEEec-cCCCEEEEEEcCCCCEEEEE-eCCCcEEEEeCCCCceeeeecCCCCCeEEEE
Q 005096 158 RLITGSQSGEFTLWNGQSFNFEMILQA-HDHAIRSMVWSHNDNWMVSG-DDGGAIKYWQNNMNNVKANKSAHKESVRDLS 235 (715)
Q Consensus 158 ~Latgs~dg~I~Iwd~~~~~~~~~l~~-h~~~V~~l~~spdg~~L~tg-s~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~ 235 (715)
+|+.+ ....|+..|+++.+....+.. .-..+..|+|+++++.|+.+ ..++.|..++++.......+.........|+
T Consensus 8 ~Ll~s-~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlA 86 (628)
T 4a0p_A 8 FLLFS-RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMA 86 (628)
T ss_dssp EEEEE-ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEE
T ss_pred EEEEE-eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEE
Confidence 45554 456799999987665444332 23568899999877666544 4568899998876554444443335678899
Q ss_pred EecCCCEEEEEE-CCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeC--CCcEEEEECCCCceeEEeccCC
Q 005096 236 FCRTDLKFCSCS-DDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGK--DSLVKLWDAKSGRELCSFHGHK 312 (715)
Q Consensus 236 ~spd~~~Las~s-~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~--Dg~I~iwDl~s~~~~~~~~~~~ 312 (715)
+...+..|+.+. ..+.|.+.+++.......+.........|+++|....|+.+.. .+.|...+++.......+. .-
T Consensus 87 vD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~-~~ 165 (628)
T 4a0p_A 87 VDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVP-NV 165 (628)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC-SC
T ss_pred EEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEEC-CC
Confidence 987666665554 4678999998654433333344456789999986666666653 5678888887544333333 45
Q ss_pred CceEEEEEcCCCCEEEEEE-CCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCc
Q 005096 313 NMVLCVKWNQNGNWVLTAS-KDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETP 389 (715)
Q Consensus 313 ~~I~sl~~spdg~~Lasgs-~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~ 389 (715)
.....|+++++++.|+.+. ..+.|..+|+..... ..+.........|++. ++.++++-...+.|...|..++..
T Consensus 166 ~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~l~~P~glav~--~~~ly~tD~~~~~I~~~dk~tg~~ 240 (628)
T 4a0p_A 166 GRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADDLPHPFGLTQY--QDYIYWTDWSRRSIERANKTSGQN 240 (628)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECCSCEEEEEEE--TTEEEEEETTTTEEEEEETTTCCS
T ss_pred CCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeeccCCCceEEEEE--CCEEEEecCCCCEEEEEECCCCCc
Confidence 6788999999877777665 457899999875433 3344444556788875 355666666678888888655543
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.30 E-value=0.00024 Score=78.57 Aligned_cols=242 Identities=10% Similarity=0.079 Sum_probs=146.9
Q ss_pred CEEEEEEcC-CCCEEEEE-eCCCcEEEEeCCCCceeeeecCC---CCCeEEEEE-------ecCCCEEEEEECCC-----
Q 005096 188 AIRSMVWSH-NDNWMVSG-DDGGAIKYWQNNMNNVKANKSAH---KESVRDLSF-------CRTDLKFCSCSDDT----- 250 (715)
Q Consensus 188 ~V~~l~~sp-dg~~L~tg-s~dg~I~iwd~~~~~~~~~~~~h---~~~I~~l~~-------spd~~~Las~s~Dg----- 250 (715)
....|+|+| ++..|+++ ...+.|+++|++.+.+....... ......|+| +.++++|+++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 467899998 34445444 44477889998887776554332 235899999 99999777776654
Q ss_pred --cEEEEECCC-CeeE-----EEecccCCceEEEEEcCC-CCEEEEEeCCCcEEEEECC-------CCce----------
Q 005096 251 --TVKVWDFAR-CQEE-----RSLTGHGWDVKSVDWHPT-KSLLVSGGKDSLVKLWDAK-------SGRE---------- 304 (715)
Q Consensus 251 --~V~iwdl~~-~~~~-----~~l~~~~~~I~si~~spd-g~~L~sgs~Dg~I~iwDl~-------s~~~---------- 304 (715)
.|.+++... +... ..+.. ......++++++ +.++++-..++.|..+|++ ++..
T Consensus 220 ~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g 298 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN 298 (496)
T ss_dssp EEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTT
T ss_pred CceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccc
Confidence 266665433 1211 12221 224567888995 4555566677889999987 5543
Q ss_pred -eEE-e-ccCCCceEEEEEcCCCCEEEEEE-CCCeEEEEEC--CCCeE--EEEeecC---C------------CCeE-EE
Q 005096 305 -LCS-F-HGHKNMVLCVKWNQNGNWVLTAS-KDQIIKLYDI--RAMKE--LESFRGH---R------------KDVT-AL 360 (715)
Q Consensus 305 -~~~-~-~~~~~~I~sl~~spdg~~Lasgs-~dg~I~iwDl--~t~~~--~~~~~~h---~------------~~V~-~l 360 (715)
... + .........|+|++++++|+++. ....|+.+|. .++.. ...+.+. . .... .+
T Consensus 299 ~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv 378 (496)
T 3kya_A 299 TFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGV 378 (496)
T ss_dssp TEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEE
T ss_pred ccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEE
Confidence 112 2 12334568999999999766654 5678888654 33332 1222221 1 1233 34
Q ss_pred EEcc------CCCCEEEEEeCCCcEEEEEcCCCCceEEEeec-----------------------cCCCEEEEEEcCC-C
Q 005096 361 AWHP------FHEEYFVSGSLDGSIFHWLVGHETPQVEIHNV-----------------------HDNTVWDLAWHPI-G 410 (715)
Q Consensus 361 ~~sp------~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~-----------------------h~~~V~~l~~spd-g 410 (715)
+... .+++++++-..+.+|+.++. ++ .+..+... .-..-+.|+++++ +
T Consensus 379 ~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~-~G-~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g 456 (496)
T 3kya_A 379 FVKNPDYTGEEEYDFYFVDRLNFCVRKVTP-EG-IVSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKE 456 (496)
T ss_dssp EEECTTCCSSCCEEEEEEEGGGTEEEEECT-TC-BEEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTT
T ss_pred EEccccccccCCCeEEEEECCCCEEEEEeC-CC-CEEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCC
Confidence 4431 25667777777788998883 33 22222211 0124678999997 7
Q ss_pred CEEEEEECCCeEEEEecCCCCC
Q 005096 411 YLLCSGSNDHTTKFWCRNRPGD 432 (715)
Q Consensus 411 ~~L~sgs~Dg~I~iWdl~~~~~ 432 (715)
.++++-..++.|+.++++....
T Consensus 457 ~lyVaD~~N~rIrki~~~~~~~ 478 (496)
T 3kya_A 457 MFYVHDQVGHTIRTISMEQEEN 478 (496)
T ss_dssp EEEEEETTTTEEEEEEECCCC-
T ss_pred EEEEEeCCCCEEEEEECCCCcc
Confidence 7777777788999998865443
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=98.29 E-value=0.0017 Score=76.36 Aligned_cols=265 Identities=13% Similarity=0.157 Sum_probs=156.6
Q ss_pred CccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEE-eccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceee
Q 005096 144 RCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMIL-QAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKA 222 (715)
Q Consensus 144 ~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l-~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~ 222 (715)
...|+||.-..+| +|..|+.+| |..||..+.+..... ......|.++....++ .|.+++.+| +.+||..+.....
T Consensus 21 ~n~V~~I~qD~~G-~lWigT~~G-L~ryDG~~~~~~~~~~~~~~~~i~~i~~d~~g-~lWigT~~G-l~~yd~~~~~f~~ 96 (758)
T 3ott_A 21 ASVVSCFLQDSEG-LIWIGSNKG-LFSYDGYSTQQHFTYGENNNTRIYCGVIIDNT-YLYMGTDNG-ILVYNYRADRYEQ 96 (758)
T ss_dssp CCCEEEEEECTTS-CEEEEESSC-EEEECSSCEEECSCTTSTTSSCEEEEEEETTT-EEEEEETTE-EEEEETTTTEECC
T ss_pred cceEEEEEECCCC-CEEEEECCC-ccccCCCceEEEEccCCCCCceEEEEEEcCCC-cEEEEeCCC-eEEEeCCCCEEEC
Confidence 5679999999888 466777887 777885432211000 1123568888776655 566666665 7889987765433
Q ss_pred eecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEec----ccCCceEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005096 223 NKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLT----GHGWDVKSVDWHPTKSLLVSGGKDSLVKLWD 298 (715)
Q Consensus 223 ~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~----~~~~~I~si~~spdg~~L~sgs~Dg~I~iwD 298 (715)
........|.++.. .++ .|..++.+ -|.++|..+.+...... .....|.++..+.++.+.+ ++.+ -|..||
T Consensus 97 ~~~~~~~~i~~i~~-~~g-~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~ 171 (758)
T 3ott_A 97 PETDFPTDVRTMAL-QGD-TLWLGALN-GLYTYQLQSRKLTSFDTRRNGLPNNTIYSIIRTKDNQIYV-GTYN-GLCRYI 171 (758)
T ss_dssp CSCCCCSCEEEEEE-ETT-EEEEEETT-EEEEEETTTCCEEEECHHHHCCSCSCEEEEEECTTCCEEE-EETT-EEEEEE
T ss_pred cccCCCceEEEEEe-cCC-cEEEEcCC-cceeEeCCCCeEEEeccCCCCcCCCeEEEEEEcCCCCEEE-EeCC-CHhhCc
Confidence 21122345777654 344 56666766 58889987654432211 1235688888887777554 5554 478888
Q ss_pred CCCCceeEEecc------CCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEE
Q 005096 299 AKSGRELCSFHG------HKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVS 372 (715)
Q Consensus 299 l~s~~~~~~~~~------~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~s 372 (715)
..+++.. .+.. ....|.++....+++.|.+|+. +-|..+|..+++...........|.++.... ++.+.+
T Consensus 172 ~~~~~~~-~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~-~g~lWi- 247 (758)
T 3ott_A 172 PSNGKFE-GIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDG-NGDLLA- 247 (758)
T ss_dssp TTTTEEE-EECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECT-TCCEEE-
T ss_pred cCCCceE-EecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcC-CCCEEE-
Confidence 8765432 2211 1234888888777776666664 4688899877654322112234577777765 444444
Q ss_pred EeCCCcEEEEEcCCCCceEEEee-------ccCCCEEEEEEcCCCCEEEEEECCCeEEEE
Q 005096 373 GSLDGSIFHWLVGHETPQVEIHN-------VHDNTVWDLAWHPIGYLLCSGSNDHTTKFW 425 (715)
Q Consensus 373 gs~DG~I~iwd~~~~~~~~~~~~-------~h~~~V~~l~~spdg~~L~sgs~Dg~I~iW 425 (715)
|+.+ -|.+++..+.... .+.. .....|.++....+|.+ ..|+..| |.++
T Consensus 248 gT~~-Gl~~~~~~~~~~~-~~~~~~~~~~~l~~~~i~~i~~D~~g~l-WiGT~~G-l~~~ 303 (758)
T 3ott_A 248 GTDN-GLYVYHNDTTPLQ-HIIHDSRNIQSLTNNIIWNIFADQEHNI-WLGTDYG-ISLS 303 (758)
T ss_dssp EETT-EEEEECCTTSCCE-EECCCTTCTTSCSCSCEEEEEECTTCCE-EEEESSS-EEEE
T ss_pred EeCC-ceeEEecCCCcEE-EEEcCCCCcCcCCcCeEEEEEEcCCCCE-EEEeCCc-cccc
Confidence 4444 5777877554322 2211 12346899988877764 4455566 4444
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=98.24 E-value=0.00027 Score=73.62 Aligned_cols=203 Identities=8% Similarity=0.051 Sum_probs=127.4
Q ss_pred CCccEEEEEEcCCCCEEEEEe-CCCeEEEEeCCCCceEEEEecc-----C--CCEEEEEE---cCCCCEEEEEeC-----
Q 005096 143 NRCSINRVLWTPTGRRLITGS-QSGEFTLWNGQSFNFEMILQAH-----D--HAIRSMVW---SHNDNWMVSGDD----- 206 (715)
Q Consensus 143 H~~~I~~l~~spdg~~Latgs-~dg~I~Iwd~~~~~~~~~l~~h-----~--~~V~~l~~---spdg~~L~tgs~----- 206 (715)
...--.+++|......|++++ .+++|..||...+..+...... + ..+..|.| .++++++++...
T Consensus 11 ~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~ 90 (334)
T 2p9w_A 11 KNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFN 90 (334)
T ss_dssp TTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTC
T ss_pred cccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccc
Confidence 333445788987666666666 7899999998865544432211 1 13678999 578767665442
Q ss_pred --------CCcEEEEeCC---CCceeeeecC-------------CCCCeEEEEEecCCCEEEEEECC-CcEEEEECCCCe
Q 005096 207 --------GGAIKYWQNN---MNNVKANKSA-------------HKESVRDLSFCRTDLKFCSCSDD-TTVKVWDFARCQ 261 (715)
Q Consensus 207 --------dg~I~iwd~~---~~~~~~~~~~-------------h~~~I~~l~~spd~~~Las~s~D-g~V~iwdl~~~~ 261 (715)
+..|..||+. +++.+..... ....+.+++..++|+..++++.. +.|..++.....
T Consensus 91 ~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~ 170 (334)
T 2p9w_A 91 FADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKT 170 (334)
T ss_dssp TTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCC
T ss_pred ccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCE
Confidence 6779999998 6665543321 11248899999999999999888 888777765432
Q ss_pred eEEEec-----ccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCce-eEEec--cC---CCceEEE-EEcCCCCEEE-
Q 005096 262 EERSLT-----GHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRE-LCSFH--GH---KNMVLCV-KWNQNGNWVL- 328 (715)
Q Consensus 262 ~~~~l~-----~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~-~~~~~--~~---~~~I~sl-~~spdg~~La- 328 (715)
....+. ......+.|+++|++++|++...++.|..+|+++... ...+. +. -.....| ..-.+|+.|+
T Consensus 171 ~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~vllV 250 (334)
T 2p9w_A 171 VSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNESVLV 250 (334)
T ss_dssp EEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETTEEEEE
T ss_pred EeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCcccccccccCCEEEEE
Confidence 221211 1122467999999999998887799999999985332 01111 11 1123332 3334677644
Q ss_pred EEECCCeEEEEECCCCe
Q 005096 329 TASKDQIIKLYDIRAMK 345 (715)
Q Consensus 329 sgs~dg~I~iwDl~t~~ 345 (715)
+....+.+.+.+.+.++
T Consensus 251 ~~~~~~~~~l~S~DgW~ 267 (334)
T 2p9w_A 251 GARAPYAISFRSWDNWK 267 (334)
T ss_dssp EEETTEEEEEECSSTTS
T ss_pred EcCCCCEEEEECCCCcc
Confidence 44455666666555443
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=98.23 E-value=0.0012 Score=75.90 Aligned_cols=227 Identities=7% Similarity=-0.058 Sum_probs=148.4
Q ss_pred CEEEEEeCCCcEEEEeCCCCceeeeec-CCCCCeEEEEEecCCCEEEEEE-CCCcEEEEECCCCeeEEEecccCCceEEE
Q 005096 199 NWMVSGDDGGAIKYWQNNMNNVKANKS-AHKESVRDLSFCRTDLKFCSCS-DDTTVKVWDFARCQEERSLTGHGWDVKSV 276 (715)
Q Consensus 199 ~~L~tgs~dg~I~iwd~~~~~~~~~~~-~h~~~I~~l~~spd~~~Las~s-~Dg~V~iwdl~~~~~~~~l~~~~~~I~si 276 (715)
.+|+.+ ....|+..+++.......+. ..-..+..|+|.+++..|+.+. .++.|+.++++.......+.........|
T Consensus 7 ~~Ll~s-~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~Gl 85 (628)
T 4a0p_A 7 AFLLFS-RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGM 85 (628)
T ss_dssp CEEEEE-ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEE
T ss_pred cEEEEE-eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceE
Confidence 345444 45788999998765433322 2234688999998776666554 57889999987654444444333457788
Q ss_pred EEcCCCCEE-EEEeCCCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEEC--CCeEEEEECCCCeEEEEeecC
Q 005096 277 DWHPTKSLL-VSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASK--DQIIKLYDIRAMKELESFRGH 353 (715)
Q Consensus 277 ~~spdg~~L-~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~--dg~I~iwDl~t~~~~~~~~~h 353 (715)
+++..++.| ++-...+.|.+.|++.......+...-.....|++.+...+|+.... .+.|...++... ....+...
T Consensus 86 AvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~-~~~~l~~~ 164 (628)
T 4a0p_A 86 AVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGS-ERTTLVPN 164 (628)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-SCEEEECS
T ss_pred EEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCC-ceEEEECC
Confidence 888665545 44455678999998755433333344456789999986667776653 568888888643 33333335
Q ss_pred CCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCCC
Q 005096 354 RKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRP 430 (715)
Q Consensus 354 ~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~ 430 (715)
-.....|++++.+++++++-...+.|..+|++.... ++..........|++.. +.++++-...+.|...|....
T Consensus 165 ~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~--~v~~~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg 238 (628)
T 4a0p_A 165 VGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR--EVIADDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSG 238 (628)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC--EEEEECCSCEEEEEEET-TEEEEEETTTTEEEEEETTTC
T ss_pred CCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce--EEeeccCCCceEEEEEC-CEEEEecCCCCEEEEEECCCC
Confidence 567889999986666666667778899999976544 23333344567888864 445555555788888776443
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.21 E-value=4.5e-05 Score=78.86 Aligned_cols=222 Identities=14% Similarity=0.111 Sum_probs=115.2
Q ss_pred CCCEEEEEe-CC-----CeEEEEeCCCCceEEEEecc--CCCEEEEEEcCCCCEEEEEeCC-----CcEEEEeCCCCc--
Q 005096 155 TGRRLITGS-QS-----GEFTLWNGQSFNFEMILQAH--DHAIRSMVWSHNDNWMVSGDDG-----GAIKYWQNNMNN-- 219 (715)
Q Consensus 155 dg~~Latgs-~d-----g~I~Iwd~~~~~~~~~l~~h--~~~V~~l~~spdg~~L~tgs~d-----g~I~iwd~~~~~-- 219 (715)
++.+++.|+ .+ ..+.+||..+.+....-... ......+. -++++++.|+.+ ..+.+||..+.+
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~ 91 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVS--LHDRIYVIGGYDGRSRLSSVECLDYTADEDG 91 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTCCTTC
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEE--ECCEEEEEcCCCCCccCceEEEEECCCCCCC
Confidence 344555665 22 36889998876543322111 11112222 256677777754 468899988765
Q ss_pred -eeeeec--CCCCCeEEEEEecCCCEEEEEECC-----CcEEEEECCCCeeEEE--ecccCCceEEEEEcCCCCEEEEEe
Q 005096 220 -VKANKS--AHKESVRDLSFCRTDLKFCSCSDD-----TTVKVWDFARCQEERS--LTGHGWDVKSVDWHPTKSLLVSGG 289 (715)
Q Consensus 220 -~~~~~~--~h~~~I~~l~~spd~~~Las~s~D-----g~V~iwdl~~~~~~~~--l~~~~~~I~si~~spdg~~L~sgs 289 (715)
-...-. ........+. -+++.++.|+.+ ..+.+||+.+.+-... +........++.+ ++++++.|+
T Consensus 92 ~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG 167 (301)
T 2vpj_A 92 VWYSVAPMNVRRGLAGATT--LGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA--SGVIYCLGG 167 (301)
T ss_dssp CCEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE--TTEEEEECC
T ss_pred eeEECCCCCCCccceeEEE--ECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE--CCEEEEECC
Confidence 322211 1111122222 256666666543 3688999876543322 2211122223333 567777776
Q ss_pred CC-----CcEEEEECCCCceeEE--eccCCCceEEEEEcCCCCEEEEEECC-----CeEEEEECCCCeEEEEee--cCCC
Q 005096 290 KD-----SLVKLWDAKSGRELCS--FHGHKNMVLCVKWNQNGNWVLTASKD-----QIIKLYDIRAMKELESFR--GHRK 355 (715)
Q Consensus 290 ~D-----g~I~iwDl~s~~~~~~--~~~~~~~I~sl~~spdg~~Lasgs~d-----g~I~iwDl~t~~~~~~~~--~h~~ 355 (715)
.+ ..+.+||+.+.+-... +........++.+ ++++++.|+.+ ..|.+||+++.+-...-. ....
T Consensus 168 ~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~ 245 (301)
T 2vpj_A 168 YDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRC 245 (301)
T ss_dssp BCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCB
T ss_pred CCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCccc
Confidence 54 4588999887643322 1111111223333 56677777654 468999998765433221 1111
Q ss_pred CeEEEEEccCCCCEEEEEeCCC-----cEEEEEcCCC
Q 005096 356 DVTALAWHPFHEEYFVSGSLDG-----SIFHWLVGHE 387 (715)
Q Consensus 356 ~V~~l~~sp~~~~~l~sgs~DG-----~I~iwd~~~~ 387 (715)
....+.+ ++.+++.|+.++ .|.+||.++.
T Consensus 246 ~~~~~~~---~~~i~v~GG~~~~~~~~~v~~yd~~~~ 279 (301)
T 2vpj_A 246 YVGATVL---RGRLYAIAGYDGNSLLSSIECYDPIID 279 (301)
T ss_dssp SCEEEEE---TTEEEEECCBCSSSBEEEEEEEETTTT
T ss_pred ceeEEEE---CCEEEEEcCcCCCcccccEEEEcCCCC
Confidence 2222222 566777776553 4677777654
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=98.20 E-value=0.00031 Score=73.82 Aligned_cols=185 Identities=10% Similarity=0.130 Sum_probs=123.2
Q ss_pred CCEEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecC----CC---EEEEEEC---CCcEEEEECC-CCeeEEEe
Q 005096 198 DNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRT----DL---KFCSCSD---DTTVKVWDFA-RCQEERSL 266 (715)
Q Consensus 198 g~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd----~~---~Las~s~---Dg~V~iwdl~-~~~~~~~l 266 (715)
..+++....++-|.+||+ .++.+..+.. ..++.+.+-++ ++ ++++... +++|.+|++. ....+..+
T Consensus 40 ~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i 116 (355)
T 3amr_A 40 NSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSM 116 (355)
T ss_dssp GCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEEC
T ss_pred ccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeec
Confidence 456777777889999999 7777777643 56677766553 22 2333333 5789999873 22234444
Q ss_pred cc------cC-CceEEEEE--cCC-CC-EEEEEeCCCcEEEEECC-------CCceeEEeccCCCceEEEEEcCCCCEEE
Q 005096 267 TG------HG-WDVKSVDW--HPT-KS-LLVSGGKDSLVKLWDAK-------SGRELCSFHGHKNMVLCVKWNQNGNWVL 328 (715)
Q Consensus 267 ~~------~~-~~I~si~~--spd-g~-~L~sgs~Dg~I~iwDl~-------s~~~~~~~~~~~~~I~sl~~spdg~~La 328 (715)
.. .. ..+..+|+ ++. ++ ++++...+|.+..|++. +.+.++++.. ...+..+...+....|+
T Consensus 117 ~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~~g~Ly 195 (355)
T 3amr_A 117 TDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDEYGRLY 195 (355)
T ss_dssp SCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETTTTEEE
T ss_pred cccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCCCCeEE
Confidence 21 11 56677887 664 44 68888889999999883 2355667663 45788888988888999
Q ss_pred EEECCCeEEEEECC-----CCeEEEEee--cCCCCeEEEEEc--cCCCCEE-EEEeCCCcEEEEEcCC
Q 005096 329 TASKDQIIKLYDIR-----AMKELESFR--GHRKDVTALAWH--PFHEEYF-VSGSLDGSIFHWLVGH 386 (715)
Q Consensus 329 sgs~dg~I~iwDl~-----t~~~~~~~~--~h~~~V~~l~~s--p~~~~~l-~sgs~DG~I~iwd~~~ 386 (715)
++-++.-|..+|.+ +.+.+..+. .....+..|++. .++..+| +++-.+.++.+||...
T Consensus 196 v~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~ 263 (355)
T 3amr_A 196 IAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQG 263 (355)
T ss_dssp EEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESST
T ss_pred EecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCC
Confidence 99999888888865 355665553 223478888884 3222244 4544677999999963
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=98.17 E-value=0.0004 Score=72.32 Aligned_cols=201 Identities=11% Similarity=0.106 Sum_probs=128.3
Q ss_pred CCCCeEEEEEecCCCEEEEEE-CCCcEEEEECCCCeeEEE-ecc----c--CCceEEEEE---cCCCCEEEEEeC-----
Q 005096 227 HKESVRDLSFCRTDLKFCSCS-DDTTVKVWDFARCQEERS-LTG----H--GWDVKSVDW---HPTKSLLVSGGK----- 290 (715)
Q Consensus 227 h~~~I~~l~~spd~~~Las~s-~Dg~V~iwdl~~~~~~~~-l~~----~--~~~I~si~~---spdg~~L~sgs~----- 290 (715)
....-.+++|......|+.++ .+++|..||...+..... +.. . ...+..|.| .++++++++...
T Consensus 11 ~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~ 90 (334)
T 2p9w_A 11 KNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFN 90 (334)
T ss_dssp TTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTC
T ss_pred cccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccc
Confidence 344456788988666766666 689999999975543333 221 0 113579999 688777665442
Q ss_pred --------CCcEEEEECC---CCceeEEecc-------------CCCceEEEEEcCCCCEEEEEECC-CeEEEEECCCCe
Q 005096 291 --------DSLVKLWDAK---SGRELCSFHG-------------HKNMVLCVKWNQNGNWVLTASKD-QIIKLYDIRAMK 345 (715)
Q Consensus 291 --------Dg~I~iwDl~---s~~~~~~~~~-------------~~~~I~sl~~spdg~~Lasgs~d-g~I~iwDl~t~~ 345 (715)
+..|..||+. +++.+....- .......++..++|+..++++.. +.|..+|... +
T Consensus 91 ~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG-~ 169 (334)
T 2p9w_A 91 FADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADG-K 169 (334)
T ss_dssp TTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTS-C
T ss_pred ccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCC-C
Confidence 6779999999 7877665531 11247899999999999988888 8888888663 3
Q ss_pred EEEEee------cCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCc-eEEEee-c---cCCCEEEE-EEcCCCCE-
Q 005096 346 ELESFR------GHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETP-QVEIHN-V---HDNTVWDL-AWHPIGYL- 412 (715)
Q Consensus 346 ~~~~~~------~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~-~~~~~~-~---h~~~V~~l-~~spdg~~- 412 (715)
.+..+. ......+.|+++| ++++|++...+|.|..+|+++... .+.+.. + .-.....| ..-.+|+.
T Consensus 170 ~~~~~~~~~~~~~~~~G~nGIv~~p-dg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~vl 248 (334)
T 2p9w_A 170 TVSTFAWESGNGGQRPGYSGITFDP-HSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNESV 248 (334)
T ss_dssp CEEEEEECCCCSSSCCSCSEEEEET-TTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETTEEE
T ss_pred EEeeeeecCCCcccccCcceEEEeC-CCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCcccccccccCCEEE
Confidence 333222 1223477999999 666666665599999999985332 121110 1 11223443 44446777
Q ss_pred EEEEECCCeEEEEecCC
Q 005096 413 LCSGSNDHTTKFWCRNR 429 (715)
Q Consensus 413 L~sgs~Dg~I~iWdl~~ 429 (715)
|++.+..+.+.+.+.+.
T Consensus 249 lV~~~~~~~~~l~S~Dg 265 (334)
T 2p9w_A 249 LVGARAPYAISFRSWDN 265 (334)
T ss_dssp EEEEETTEEEEEECSST
T ss_pred EEEcCCCCEEEEECCCC
Confidence 55555677666666544
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=98.16 E-value=7.9e-06 Score=95.36 Aligned_cols=220 Identities=8% Similarity=-0.047 Sum_probs=133.5
Q ss_pred CCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEE-CCCcEEEEECCC----CeeEEEecccCCceEEEEEcC
Q 005096 206 DGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCS-DDTTVKVWDFAR----CQEERSLTGHGWDVKSVDWHP 280 (715)
Q Consensus 206 ~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s-~Dg~V~iwdl~~----~~~~~~l~~~~~~I~si~~sp 280 (715)
....|++.++...+....+.. ...+..|+|.+.+..|+.+. .++.|+.+++.. ......+.........|+++.
T Consensus 384 ~~~~I~~id~~~~~~~~~~~~-~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~ 462 (699)
T 1n7d_A 384 NRHEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDW 462 (699)
T ss_dssp CTTC-CEECTTSCCEECCSCC-CTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCC
T ss_pred CccceEEEeCCCCcceeeecc-CcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEe
Confidence 345788888877665444333 34567899998777766654 457899999875 222222222223456788875
Q ss_pred CC-CEEEEEeCCCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEEC--CCeEEEEECCCCeEEEEeecCCCCe
Q 005096 281 TK-SLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASK--DQIIKLYDIRAMKELESFRGHRKDV 357 (715)
Q Consensus 281 dg-~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~--dg~I~iwDl~t~~~~~~~~~h~~~V 357 (715)
.+ +++++-...+.|.++|++.......+.........|++++++.+|+.+.. .+.|.++++........+...-...
T Consensus 463 ~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~P 542 (699)
T 1n7d_A 463 IHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWP 542 (699)
T ss_dssp SSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSC
T ss_pred eCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCc
Confidence 44 44454456678999998855444333333345678899987666665543 2678888876332222222233456
Q ss_pred EEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeec--cCCCEEEEEEcCCCCEEEEEECCCeEEEEecC
Q 005096 358 TALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNV--HDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRN 428 (715)
Q Consensus 358 ~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~--h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~ 428 (715)
+.|+|+++++.++++-+..+.|.+++++..... .+... .......|++..+ .++++....+.|..++..
T Consensus 543 nGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~-~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~ 613 (699)
T 1n7d_A 543 NGITLDLLSGRLYWVDSKLHSISSIDVNGGNRK-TILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRL 613 (699)
T ss_dssp CCEEECTTTCCEEEEETTTTEEEEECSSSSCCE-EECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETT
T ss_pred cEEEEeccCCEEEEEecCCCeEEEEccCCCceE-EEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEcc
Confidence 789999867778887777889999998653332 23221 1123445666543 455555566788888753
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=98.16 E-value=0.0026 Score=74.72 Aligned_cols=269 Identities=11% Similarity=0.073 Sum_probs=154.9
Q ss_pred CccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeee
Q 005096 144 RCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKAN 223 (715)
Q Consensus 144 ~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~ 223 (715)
...|.++....+| .|.+|+.+| |.+||..+.+...........|.++... ++ .|.+++.+ -|..+|..+++....
T Consensus 62 ~~~i~~i~~d~~g-~lWigT~~G-l~~yd~~~~~f~~~~~~~~~~i~~i~~~-~g-~lWigt~~-Gl~~~~~~~~~~~~~ 136 (758)
T 3ott_A 62 NTRIYCGVIIDNT-YLYMGTDNG-ILVYNYRADRYEQPETDFPTDVRTMALQ-GD-TLWLGALN-GLYTYQLQSRKLTSF 136 (758)
T ss_dssp SSCEEEEEEETTT-EEEEEETTE-EEEEETTTTEECCCSCCCCSCEEEEEEE-TT-EEEEEETT-EEEEEETTTCCEEEE
T ss_pred CceEEEEEEcCCC-cEEEEeCCC-eEEEeCCCCEEECcccCCCceEEEEEec-CC-cEEEEcCC-cceeEeCCCCeEEEe
Confidence 3568888887776 577777766 8899988765433111123457777543 44 56666665 577888876654432
Q ss_pred e----cCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecc-----cCCceEEEEEcCCCCEEEEEeCCCcE
Q 005096 224 K----SAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTG-----HGWDVKSVDWHPTKSLLVSGGKDSLV 294 (715)
Q Consensus 224 ~----~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~-----~~~~I~si~~spdg~~L~sgs~Dg~I 294 (715)
. ......|.++....++.+.+ ++.+ -|..+|..+.+....... ....|.++....++..|.+++. +-|
T Consensus 137 ~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl 213 (758)
T 3ott_A 137 DTRRNGLPNNTIYSIIRTKDNQIYV-GTYN-GLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYL 213 (758)
T ss_dssp CHHHHCCSCSCEEEEEECTTCCEEE-EETT-EEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEE
T ss_pred ccCCCCcCCCeEEEEEEcCCCCEEE-EeCC-CHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCC
Confidence 1 11235688888877776554 5554 477888776554322111 1234888888877776666664 458
Q ss_pred EEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEee-------cCCCCeEEEEEccCCC
Q 005096 295 KLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFR-------GHRKDVTALAWHPFHE 367 (715)
Q Consensus 295 ~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~-------~h~~~V~~l~~sp~~~ 367 (715)
..||..+++...........|.++....++.+. +|+. +-|.++|..+.+...... .....|.++.... ++
T Consensus 214 ~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lW-igT~-~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~-~g 290 (758)
T 3ott_A 214 FQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLL-AGTD-NGLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQ-EH 290 (758)
T ss_dssp EEEETTTTEEEEEEEEEEEEEEEEEECTTCCEE-EEET-TEEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECT-TC
T ss_pred eEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEE-EEeC-CceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcC-CC
Confidence 889987664322211123458888888777654 4554 458888887654322211 1234588887765 44
Q ss_pred CEEEEEeCCCcEEEEEcCCCCceEEEe----eccCCCEEEEEEcCCCCEEEEEECCCeEEEEec
Q 005096 368 EYFVSGSLDGSIFHWLVGHETPQVEIH----NVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCR 427 (715)
Q Consensus 368 ~~l~sgs~DG~I~iwd~~~~~~~~~~~----~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl 427 (715)
.+ ..|+..| |.++............ ......|.++.-..+|.+.+ |+.+| +..++.
T Consensus 291 ~l-WiGT~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWi-Gt~~G-l~~~~~ 350 (758)
T 3ott_A 291 NI-WLGTDYG-ISLSRYNSALQFIPISQITGTGDGNQFYSLFRDSKGFYWF-GGANG-LIRFTD 350 (758)
T ss_dssp CE-EEEESSS-EEEECCCC-CEEEEHHHHSCSCCCCBEEEEEECTTCCEEE-EETTE-EEEESC
T ss_pred CE-EEEeCCc-ccccccCCceeEEecccCCCCCCCceEEEEEEcCCCCEEE-eeCCc-ceeecc
Confidence 44 4445556 5444332211111100 01134688888887776554 45555 444543
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.15 E-value=0.0012 Score=70.08 Aligned_cols=224 Identities=10% Similarity=0.092 Sum_probs=124.4
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcee--eee---cCCCCCeEEEEEecC---CCEEEEEEC-C-----CcE
Q 005096 187 HAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVK--ANK---SAHKESVRDLSFCRT---DLKFCSCSD-D-----TTV 252 (715)
Q Consensus 187 ~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~--~~~---~~h~~~I~~l~~spd---~~~Las~s~-D-----g~V 252 (715)
..-..|+|.+++++++ +..+|.|++++ .++.. ..+ .........|+|+++ +..|+++.. + +.|
T Consensus 31 ~~P~~ia~~pdG~l~V-~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v 107 (352)
T 2ism_A 31 EVPWALAFLPDGGMLI-AERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV 107 (352)
T ss_dssp SCEEEEEECTTSCEEE-EETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred CCceEEEEcCCCeEEE-EeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence 4567999999998555 45679999998 33321 111 122456889999998 555555543 2 678
Q ss_pred EEEECCCCe-----eE-EEec---ccCCceEEEEEcCCCCEEEEEeC-------------CCcEEEEECCCC--------
Q 005096 253 KVWDFARCQ-----EE-RSLT---GHGWDVKSVDWHPTKSLLVSGGK-------------DSLVKLWDAKSG-------- 302 (715)
Q Consensus 253 ~iwdl~~~~-----~~-~~l~---~~~~~I~si~~spdg~~L~sgs~-------------Dg~I~iwDl~s~-------- 302 (715)
..|++.... .+ ..+. ........|+|.+||.++++.+. .+.|..+|.+..
T Consensus 108 ~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~ 187 (352)
T 2ism_A 108 VRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFL 187 (352)
T ss_dssp EEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTT
T ss_pred EEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCccc
Confidence 888876431 11 1122 11123468999999976666432 145666665430
Q ss_pred ----ceeEEeccCCCceEEEEEcC-CCCEEEEEECCCeE------EEEECCCCe------------------EEEEeecC
Q 005096 303 ----RELCSFHGHKNMVLCVKWNQ-NGNWVLTASKDQII------KLYDIRAMK------------------ELESFRGH 353 (715)
Q Consensus 303 ----~~~~~~~~~~~~I~sl~~sp-dg~~Lasgs~dg~I------~iwDl~t~~------------------~~~~~~~h 353 (715)
.....+...-.....++|++ +++++++-.....+ .|.-+..+. .+..+ ..
T Consensus 188 ~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~-~~ 266 (352)
T 2ism_A 188 GRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFW-PQ 266 (352)
T ss_dssp TCTTSCTTEEEECCSEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEEC-TT
T ss_pred CCCCCCccEEEEcCCCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEec-CC
Confidence 01111111123356789999 56655443322221 122222222 11222 12
Q ss_pred CCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCc------eEEEeeccCCCEEEEEEcCCCCEEEEEE
Q 005096 354 RKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETP------QVEIHNVHDNTVWDLAWHPIGYLLCSGS 417 (715)
Q Consensus 354 ~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~------~~~~~~~h~~~V~~l~~spdg~~L~sgs 417 (715)
......++|. ++.++++.-..+.|...+++.... ...++ .....+.++++.+||.++++..
T Consensus 267 ~~ap~G~~~~--~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~-~~~~rp~~v~~~pdG~lyv~~~ 333 (352)
T 2ism_A 267 GFPPGNLAFF--RGDLYVAGLRGQALLRLVLEGERGRWRVLRVETAL-SGFGRLREVQVGPDGALYVTTS 333 (352)
T ss_dssp CCCEEEEEEE--TTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEE-ESSCCEEEEEECTTSCEEEEEC
T ss_pred CCCCcceEEE--CCEEEEEECCCCEEEEEEECCCCcceeecchheec-ccCCCeeEEEECCCCcEEEEEe
Confidence 2345677773 566777666677788877764432 12222 2245789999999997766654
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.13 E-value=0.0005 Score=73.14 Aligned_cols=223 Identities=9% Similarity=0.095 Sum_probs=119.9
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEE--Ee---ccCCCEEEEEEcCC---CCEEEEEeCC------CcE
Q 005096 145 CSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMI--LQ---AHDHAIRSMVWSHN---DNWMVSGDDG------GAI 210 (715)
Q Consensus 145 ~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~--l~---~h~~~V~~l~~spd---g~~L~tgs~d------g~I 210 (715)
..-..++|.+||+ |+++..+|.|++++ +++.... +. ........|+|+++ +..|+++... +.|
T Consensus 31 ~~P~~ia~~pdG~-l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v 107 (352)
T 2ism_A 31 EVPWALAFLPDGG-MLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV 107 (352)
T ss_dssp SCEEEEEECTTSC-EEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred CCceEEEEcCCCe-EEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence 3567999999998 55556779999998 3332221 11 12456889999998 5566554432 567
Q ss_pred EEEeCCCCce------eeeec---CCCCCeEEEEEecCCCEEEEEEC-------------CCcEEEEECCCC--------
Q 005096 211 KYWQNNMNNV------KANKS---AHKESVRDLSFCRTDLKFCSCSD-------------DTTVKVWDFARC-------- 260 (715)
Q Consensus 211 ~iwd~~~~~~------~~~~~---~h~~~I~~l~~spd~~~Las~s~-------------Dg~V~iwdl~~~-------- 260 (715)
..|+...... ...+. ........|+|.+|+.++++.+. .+.|..+|.+..
T Consensus 108 ~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~ 187 (352)
T 2ism_A 108 VRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFL 187 (352)
T ss_dssp EEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTT
T ss_pred EEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCccc
Confidence 7787764311 11122 11123468999999976665432 145666655420
Q ss_pred ----eeEEEecccCCceEEEEEcC-CCCEEEEEeCCCcE------EEEECCCCc------------------eeEEeccC
Q 005096 261 ----QEERSLTGHGWDVKSVDWHP-TKSLLVSGGKDSLV------KLWDAKSGR------------------ELCSFHGH 311 (715)
Q Consensus 261 ----~~~~~l~~~~~~I~si~~sp-dg~~L~sgs~Dg~I------~iwDl~s~~------------------~~~~~~~~ 311 (715)
.....+.........++|++ +++++++-.....+ .|.-+..+. .+..+. .
T Consensus 188 ~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~-~ 266 (352)
T 2ism_A 188 GRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFWP-Q 266 (352)
T ss_dssp TCTTSCTTEEEECCSEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECT-T
T ss_pred CCCCCCccEEEEcCCCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEecC-C
Confidence 01111111123356789999 56655543332221 122222221 122222 2
Q ss_pred CCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeE------EEEeecCCCCeEEEEEccCCCCEEEEE
Q 005096 312 KNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKE------LESFRGHRKDVTALAWHPFHEEYFVSG 373 (715)
Q Consensus 312 ~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~------~~~~~~h~~~V~~l~~sp~~~~~l~sg 373 (715)
......++| .+++++++....+.|...+++.... ...+......+..+++.+ ++.++++.
T Consensus 267 ~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~p-dG~lyv~~ 332 (352)
T 2ism_A 267 GFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGP-DGALYVTT 332 (352)
T ss_dssp CCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECT-TSCEEEEE
T ss_pred CCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECC-CCcEEEEE
Confidence 234567777 3666665555667788777753321 122222335688888888 45555544
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=98.11 E-value=0.0056 Score=65.57 Aligned_cols=232 Identities=10% Similarity=0.120 Sum_probs=148.9
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC-ceeeeecCC-
Q 005096 150 VLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN-NVKANKSAH- 227 (715)
Q Consensus 150 l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~-~~~~~~~~h- 227 (715)
.-.+|..+.||.-. ..++.|+|+++...++.+...+. |.-=.|..+ +.|+..+ +..|+-|+++.. .....+..|
T Consensus 71 AIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e~-VvfWkWis~-~~l~lVT-~taVyHWsi~~~s~P~kvFdR~~ 146 (494)
T 1bpo_A 71 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDD-VTFWKWISL-NTVALVT-DNAVYHWSMEGESQPVKMFDRHS 146 (494)
T ss_dssp EEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSSC-CCEEEEEET-TEEEEEC-SSEEEEEESSSSCCCEEEEECCG
T ss_pred eeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCCC-ceEEEecCC-CeEEEEc-CCeeEEecccCCCCchhheecch
Confidence 34566666666554 67899999999999988886554 444466544 4454443 468999998753 233333322
Q ss_pred ---CCCeEEEEEecCCCEEEEEEC-------CCcEEEEECCCCeeEEEecccCCceEEEEEcCCC---CEEEEEeCC---
Q 005096 228 ---KESVRDLSFCRTDLKFCSCSD-------DTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTK---SLLVSGGKD--- 291 (715)
Q Consensus 228 ---~~~I~~l~~spd~~~Las~s~-------Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg---~~L~sgs~D--- 291 (715)
...|.....+++.++++..+- .|.+.+|..+. +....+.+|......+.+.-+. ++|+.+...
T Consensus 147 ~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er-~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g 225 (494)
T 1bpo_A 147 SLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAG 225 (494)
T ss_dssp GGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTT-CCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTC
T ss_pred hcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccc-cccchheeeeeeeEEEecCCCCCCceEEEEEEecCCC
Confidence 356777777888888765432 46788998865 4556777777666555554322 245555443
Q ss_pred CcEEEEECCCC--------ceeEEe----ccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEE
Q 005096 292 SLVKLWDAKSG--------RELCSF----HGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTA 359 (715)
Q Consensus 292 g~I~iwDl~s~--------~~~~~~----~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~ 359 (715)
+.+.|.++... +....+ +...+--.++..++.-..++..+.-|.|.+||+.++.++..-+.....|..
T Consensus 226 ~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~ 305 (494)
T 1bpo_A 226 GKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFV 305 (494)
T ss_dssp CEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEE
T ss_pred cEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeecccCCceEE
Confidence 78999998542 111111 112344567888888889999999999999999999999888766666655
Q ss_pred EEEccCCCCEEEEEeCCCcEEEEEcCCC
Q 005096 360 LAWHPFHEEYFVSGSLDGSIFHWLVGHE 387 (715)
Q Consensus 360 l~~sp~~~~~l~sgs~DG~I~iwd~~~~ 387 (715)
-+.+. ...=+++...+|.|.-..++..
T Consensus 306 t~~~~-~~~Gi~~Vnr~GqVl~v~v~e~ 332 (494)
T 1bpo_A 306 TAPHE-ATAGIIGVNRKGQVLSVCVEEE 332 (494)
T ss_dssp EEEET-TTTEEEEEETTCEEEEEEECTT
T ss_pred ecccC-CCCcEEEEccCceEEEEEEccc
Confidence 55444 3333344445565555544433
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.11 E-value=0.00011 Score=76.00 Aligned_cols=221 Identities=11% Similarity=0.079 Sum_probs=112.4
Q ss_pred CEEEEEeCC----CeEEEEeCCCCceEEEEeccC--CCEEEEEEcCCCCEEEEEeCC-----CcEEEEeCCCCceeeeec
Q 005096 157 RRLITGSQS----GEFTLWNGQSFNFEMILQAHD--HAIRSMVWSHNDNWMVSGDDG-----GAIKYWQNNMNNVKANKS 225 (715)
Q Consensus 157 ~~Latgs~d----g~I~Iwd~~~~~~~~~l~~h~--~~V~~l~~spdg~~L~tgs~d-----g~I~iwd~~~~~~~~~~~ 225 (715)
.+++.|+.+ ..+.+||..+.+....-.... ..-..+.+ ++++++.|+.+ ..+.+||..+.+-...-.
T Consensus 17 ~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~ 94 (302)
T 2xn4_A 17 LMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYM--AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVAN 94 (302)
T ss_dssp EEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECC
T ss_pred EEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEEE--CCEEEEEeCcCCCccccceEEECCCCCceeeCCC
Confidence 345555543 458889988765443311111 11112222 56677777654 358888988765333221
Q ss_pred CCCCCe-EEEEEecCCCEEEEEECCC-----cEEEEECCCCeeEEE--ecccCCceEEEEEcCCCCEEEEEeCC------
Q 005096 226 AHKESV-RDLSFCRTDLKFCSCSDDT-----TVKVWDFARCQEERS--LTGHGWDVKSVDWHPTKSLLVSGGKD------ 291 (715)
Q Consensus 226 ~h~~~I-~~l~~spd~~~Las~s~Dg-----~V~iwdl~~~~~~~~--l~~~~~~I~si~~spdg~~L~sgs~D------ 291 (715)
...... .+++. -+++.++.|+.++ .+.+||+.+.+-... +........++.+ ++++++.|+.+
T Consensus 95 ~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~ 171 (302)
T 2xn4_A 95 MRDRRSTLGAAV-LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV--GGLLYAVGGYDVASRQC 171 (302)
T ss_dssp CSSCCBSCEEEE-ETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTTTEE
T ss_pred CCccccceEEEE-ECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE--CCEEEEEeCCCCCCCcc
Confidence 111111 12222 2566777776543 578889876543322 1111112222333 46666766542
Q ss_pred -CcEEEEECCCCceeEE--eccCCCceEEEEEcCCCCEEEEEECC-----CeEEEEECCCCeEEEE--eecCCCCeEEEE
Q 005096 292 -SLVKLWDAKSGRELCS--FHGHKNMVLCVKWNQNGNWVLTASKD-----QIIKLYDIRAMKELES--FRGHRKDVTALA 361 (715)
Q Consensus 292 -g~I~iwDl~s~~~~~~--~~~~~~~I~sl~~spdg~~Lasgs~d-----g~I~iwDl~t~~~~~~--~~~h~~~V~~l~ 361 (715)
..+.+||+.+.+-... +........++.+ ++++++.|+.+ ..|.+||+++.+-... +.........+.
T Consensus 172 ~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~ 249 (302)
T 2xn4_A 172 LSTVECYNATTNEWTYIAEMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCA 249 (302)
T ss_dssp CCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE
T ss_pred ccEEEEEeCCCCcEEECCCCccccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEE
Confidence 3588999987643322 1111112222333 56777777654 4689999987654322 211111112222
Q ss_pred EccCCCCEEEEEeCCC-----cEEEEEcCCC
Q 005096 362 WHPFHEEYFVSGSLDG-----SIFHWLVGHE 387 (715)
Q Consensus 362 ~sp~~~~~l~sgs~DG-----~I~iwd~~~~ 387 (715)
+ ++.+++.|+.++ .|.+||..+.
T Consensus 250 ~---~~~i~v~GG~~~~~~~~~v~~yd~~~~ 277 (302)
T 2xn4_A 250 V---NGLLYVVGGDDGSCNLASVEYYNPTTD 277 (302)
T ss_dssp E---TTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred E---CCEEEEECCcCCCcccccEEEEcCCCC
Confidence 2 567777777553 4777777654
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=98.08 E-value=8.7e-06 Score=95.02 Aligned_cols=216 Identities=6% Similarity=-0.078 Sum_probs=128.3
Q ss_pred ccEEEEEEcCCCCEEEEEe-CCCeEEEEeCCC----CceEEEEeccCCCEEEEEEcCCC-CEEEEEeCCCcEEEEeCCCC
Q 005096 145 CSINRVLWTPTGRRLITGS-QSGEFTLWNGQS----FNFEMILQAHDHAIRSMVWSHND-NWMVSGDDGGAIKYWQNNMN 218 (715)
Q Consensus 145 ~~I~~l~~spdg~~Latgs-~dg~I~Iwd~~~----~~~~~~l~~h~~~V~~l~~spdg-~~L~tgs~dg~I~iwd~~~~ 218 (715)
..+..|+|++++..|+.+. .++.|+.+++.. ......+.........|++...+ +++++-...+.|.+++++..
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~ 485 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 485 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence 4567899998777776664 457899998875 22222222112234567777544 44455456688999998766
Q ss_pred ceeeeecCCCCCeEEEEEecCCCEEEEEEC--CCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEE-eCCCcEE
Q 005096 219 NVKANKSAHKESVRDLSFCRTDLKFCSCSD--DTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSG-GKDSLVK 295 (715)
Q Consensus 219 ~~~~~~~~h~~~I~~l~~spd~~~Las~s~--Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sg-s~Dg~I~ 295 (715)
.....+.........|++.+.+.+|+.+.. .+.|.++++........+.......+.|+|+++++.|+++ ...+.|.
T Consensus 486 ~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~ 565 (699)
T 1n7d_A 486 KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSIS 565 (699)
T ss_dssp CEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEE
T ss_pred ceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEE
Confidence 554444333455678899886665555443 2678888875433222222233456789999876655444 4567899
Q ss_pred EEECCCCceeEEecc--CCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEE
Q 005096 296 LWDAKSGRELCSFHG--HKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALA 361 (715)
Q Consensus 296 iwDl~s~~~~~~~~~--~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~ 361 (715)
++|++.......+.. .......|++..+ .++++....+.|..+|..+++.+..+.........|+
T Consensus 566 ~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i~~~~~~P~~i~ 632 (699)
T 1n7d_A 566 SIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMV 632 (699)
T ss_dssp EECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECCCTTCSSCCCCC
T ss_pred EEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEeecCCCCCcEEE
Confidence 999874333222221 1223445566433 3444445667899999888888777654333344443
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=98.07 E-value=0.0025 Score=67.71 Aligned_cols=225 Identities=10% Similarity=0.062 Sum_probs=127.1
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc-eeeee---cCCCCCeEEEEEecC---CCEEEEEEC----C----Cc
Q 005096 187 HAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNN-VKANK---SAHKESVRDLSFCRT---DLKFCSCSD----D----TT 251 (715)
Q Consensus 187 ~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~-~~~~~---~~h~~~I~~l~~spd---~~~Las~s~----D----g~ 251 (715)
.....|+|.+++++ +++..+|.|++++. .++ .+..+ .........|+++++ +..|+++.. + +.
T Consensus 29 ~~P~~ia~~pdG~l-~V~e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~ 106 (354)
T 3a9g_A 29 EVPWSIAPLGGGRY-LVTERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNR 106 (354)
T ss_dssp SCEEEEEEEETTEE-EEEETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEE
T ss_pred CCCeEEEEcCCCeE-EEEeCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceE
Confidence 45679999999874 44566799999873 333 22211 122356889999997 555555443 2 56
Q ss_pred EEEEECCCC-------eeE-EEecc-cCCceEEEEEcCCCCEEEEEeC-------------CCcEEEEECCCC-------
Q 005096 252 VKVWDFARC-------QEE-RSLTG-HGWDVKSVDWHPTKSLLVSGGK-------------DSLVKLWDAKSG------- 302 (715)
Q Consensus 252 V~iwdl~~~-------~~~-~~l~~-~~~~I~si~~spdg~~L~sgs~-------------Dg~I~iwDl~s~------- 302 (715)
|..|+.... +.+ ..+.. .......|+|.+||.++++.+. .+.|..+|.+..
T Consensus 107 v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf 186 (354)
T 3a9g_A 107 VIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPF 186 (354)
T ss_dssp EEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSS
T ss_pred EEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCC
Confidence 788887543 111 11221 1123467999999987666443 245555555421
Q ss_pred --ceeEEeccCCCceEEEEEcC-CCCEEEEEECCC---eEEEEECCCCe------------------EEEEeecCCCCeE
Q 005096 303 --RELCSFHGHKNMVLCVKWNQ-NGNWVLTASKDQ---IIKLYDIRAMK------------------ELESFRGHRKDVT 358 (715)
Q Consensus 303 --~~~~~~~~~~~~I~sl~~sp-dg~~Lasgs~dg---~I~iwDl~t~~------------------~~~~~~~h~~~V~ 358 (715)
..+.. .++ .....++|++ +++++++-.... .|.+.. .+. .+..+........
T Consensus 187 ~~~~i~a-~G~-rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~--~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~ 262 (354)
T 3a9g_A 187 PNSPIWS-YGH-RNPQGIDWHRASGVMVATEHGPVGHDEVNIIL--KGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPS 262 (354)
T ss_dssp TTCCEEE-ECC-SCCCEEEECTTTCCEEEEECCSSSCCEEEEEC--TTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEE
T ss_pred CCCcEEE-Ecc-CCcceEEEeCCCCCEEEEecCCCCCcEEEEec--CCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCc
Confidence 11221 122 2356799999 566444432211 243332 221 1222211234577
Q ss_pred EEEEcc------CCCCEEEEEeCCCcEEEEEcCCCCceE---EEeeccCCCEEEEEEcCCCCEEEEEE
Q 005096 359 ALAWHP------FHEEYFVSGSLDGSIFHWLVGHETPQV---EIHNVHDNTVWDLAWHPIGYLLCSGS 417 (715)
Q Consensus 359 ~l~~sp------~~~~~l~sgs~DG~I~iwd~~~~~~~~---~~~~~h~~~V~~l~~spdg~~L~sgs 417 (715)
.++|.. .++.++++.-..+.|...+++...... .++......+.++++.+||.++++..
T Consensus 263 G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 263 GASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp EEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred ceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence 888832 256677776667788888887543222 23322245789999999997666654
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=98.06 E-value=0.003 Score=67.09 Aligned_cols=228 Identities=9% Similarity=0.077 Sum_probs=125.0
Q ss_pred CccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc-eEEEEe---ccCCCEEEEEEcCC---CCEEEEEeC----C----C
Q 005096 144 RCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFN-FEMILQ---AHDHAIRSMVWSHN---DNWMVSGDD----G----G 208 (715)
Q Consensus 144 ~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~-~~~~l~---~h~~~V~~l~~spd---g~~L~tgs~----d----g 208 (715)
-..-..|+|.+||+ |+++..+|.|+++|. +++ .+..+. ........|+|+++ +..|+++.. + .
T Consensus 28 l~~P~~ia~~pdG~-l~V~e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~ 105 (354)
T 3a9g_A 28 LEVPWSIAPLGGGR-YLVTERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRN 105 (354)
T ss_dssp CSCEEEEEEEETTE-EEEEETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEE
T ss_pred CCCCeEEEEcCCCe-EEEEeCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcce
Confidence 34578999999997 556667799999973 444 111111 12356889999997 556655443 2 5
Q ss_pred cEEEEeCCCC--c---e--e-eeec-CCCCCeEEEEEecCCCEEEEEEC-------------CCcEEEEECCCCe-----
Q 005096 209 AIKYWQNNMN--N---V--K-ANKS-AHKESVRDLSFCRTDLKFCSCSD-------------DTTVKVWDFARCQ----- 261 (715)
Q Consensus 209 ~I~iwd~~~~--~---~--~-~~~~-~h~~~I~~l~~spd~~~Las~s~-------------Dg~V~iwdl~~~~----- 261 (715)
.|..|+.... . . + ..+. ........|+|.+|+.++++.+. .+.|..+|.+..-
T Consensus 106 ~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~np 185 (354)
T 3a9g_A 106 RVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNP 185 (354)
T ss_dssp EEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSS
T ss_pred EEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCC
Confidence 6777776543 1 1 1 1111 11123467999999987666432 2455555543210
Q ss_pred --eEEEecccCCceEEEEEcC-CCCEEEEEeCCC---cEEEEECCC--------C--------ceeEEeccCCCceEEEE
Q 005096 262 --EERSLTGHGWDVKSVDWHP-TKSLLVSGGKDS---LVKLWDAKS--------G--------RELCSFHGHKNMVLCVK 319 (715)
Q Consensus 262 --~~~~l~~~~~~I~si~~sp-dg~~L~sgs~Dg---~I~iwDl~s--------~--------~~~~~~~~~~~~I~sl~ 319 (715)
....+.........|+|++ +++++++-.... .|.+..... + ..+..+.........++
T Consensus 186 f~~~~i~a~G~rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G~~ 265 (354)
T 3a9g_A 186 FPNSPIWSYGHRNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSGAS 265 (354)
T ss_dssp STTCCEEEECCSCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEEEE
T ss_pred CCCCcEEEEccCCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcceE
Confidence 0111111123456899999 566444432221 243332110 0 12223311234577888
Q ss_pred Ec-------CCCCEEEEEECCCeEEEEECCCC-eEE--EEee-cCCCCeEEEEEccCCCCEEEEEe
Q 005096 320 WN-------QNGNWVLTASKDQIIKLYDIRAM-KEL--ESFR-GHRKDVTALAWHPFHEEYFVSGS 374 (715)
Q Consensus 320 ~s-------pdg~~Lasgs~dg~I~iwDl~t~-~~~--~~~~-~h~~~V~~l~~sp~~~~~l~sgs 374 (715)
|. .+++++++....+.|...++... +.. ..+. .....+..|++.+ ++.++++..
T Consensus 266 ~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~p-DG~lyv~~~ 330 (354)
T 3a9g_A 266 FVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDD-DGGILISTS 330 (354)
T ss_dssp ECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECT-TSCEEEEEC
T ss_pred EECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECC-CCcEEEEEe
Confidence 83 46766666666778988888753 222 2232 2245688899888 455555543
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=98.05 E-value=0.022 Score=61.02 Aligned_cols=257 Identities=11% Similarity=0.094 Sum_probs=169.3
Q ss_pred CCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEE
Q 005096 165 SGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFC 244 (715)
Q Consensus 165 dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~La 244 (715)
+..|.|.|+.+...+.+..-. ..+...+|..+.|+.-. ..++.|+|+++...+....-. +.|.-=.|..+ +.|+
T Consensus 47 ~~~vvIiDl~~~~~~~rrpi~---AdsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~-e~VvfWkWis~-~~l~ 120 (494)
T 1bpo_A 47 QAQVVIIDMNDPSNPIRRPIS---ADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT-DDVTFWKWISL-NTVA 120 (494)
T ss_dssp CCEEEEEETTSTTSCEEEECC---CSEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECS-SCCCEEEEEET-TEEE
T ss_pred CCeEEEEECCCCCcceecccc---cceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecC-CCceEEEecCC-CeEE
Confidence 347899998886554332211 12445677778777654 689999999998877776543 45666666644 4455
Q ss_pred EEECCCcEEEEECCC-CeeEEEeccc----CCceEEEEEcCCCCEEEEEeC-------CCcEEEEECCCCceeEEeccCC
Q 005096 245 SCSDDTTVKVWDFAR-CQEERSLTGH----GWDVKSVDWHPTKSLLVSGGK-------DSLVKLWDAKSGRELCSFHGHK 312 (715)
Q Consensus 245 s~s~Dg~V~iwdl~~-~~~~~~l~~~----~~~I~si~~spdg~~L~sgs~-------Dg~I~iwDl~s~~~~~~~~~~~ 312 (715)
..+ +..|+.|+++. ...++.+..| ...|.....+++.++++..+- .|.+.+|..+. +.-..+++|.
T Consensus 121 lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er-~~sQ~ieGha 198 (494)
T 1bpo_A 121 LVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHA 198 (494)
T ss_dssp EEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTT-CCEEEECCSE
T ss_pred EEc-CCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccc-cccchheeee
Confidence 544 45799999964 3455555543 356788888999997765432 36788999874 4456677777
Q ss_pred CceEEEEEcCCC---CEEEEEECC---CeEEEEECCCC--------eEEEE-ee---cCCCCeEEEEEccCCCCEEEEEe
Q 005096 313 NMVLCVKWNQNG---NWVLTASKD---QIIKLYDIRAM--------KELES-FR---GHRKDVTALAWHPFHEEYFVSGS 374 (715)
Q Consensus 313 ~~I~sl~~spdg---~~Lasgs~d---g~I~iwDl~t~--------~~~~~-~~---~h~~~V~~l~~sp~~~~~l~sgs 374 (715)
.....+.+.-+. .+++.+... ++++|.++... +.... +- ...+--.++.+++ ...++...+
T Consensus 199 a~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~-kygviyviT 277 (494)
T 1bpo_A 199 ASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISE-KHDVVFLIT 277 (494)
T ss_dssp EEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEET-TTTEEEEEE
T ss_pred eeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecc-cCCEEEEEe
Confidence 666555544321 234444432 78999998542 11111 11 1234456778887 677888889
Q ss_pred CCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCCCC
Q 005096 375 LDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPG 431 (715)
Q Consensus 375 ~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~ 431 (715)
.-|.|++||+.++..+..-.. ..+.|...+.+.+..=++....+|.|.--.+++..
T Consensus 278 K~G~i~lyDleTgt~i~~nrI-s~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~ 333 (494)
T 1bpo_A 278 KYGYIHLYDLETGTCIYMNRI-SGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEEN 333 (494)
T ss_dssp TTSEEEEEETTTCCEEEEEEC-CSSCEEEEEEETTTTEEEEEETTCEEEEEEECTTT
T ss_pred cCceEEEEecccceeeeeecc-cCCceEEecccCCCCcEEEEccCceEEEEEEcccc
Confidence 999999999999988766553 45567666666666667777789998888886544
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.03 E-value=0.0002 Score=73.97 Aligned_cols=224 Identities=13% Similarity=0.101 Sum_probs=113.1
Q ss_pred CCCEEEEEe-CC-----CcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECC-----CcEEEEECCCCe----
Q 005096 197 NDNWMVSGD-DG-----GAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDD-----TTVKVWDFARCQ---- 261 (715)
Q Consensus 197 dg~~L~tgs-~d-----g~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~D-----g~V~iwdl~~~~---- 261 (715)
++.+++.|+ .+ ..+.+||..+.+-...-..........+..-++..++.|+.+ ..+.+||+.+.+
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W 93 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVW 93 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTCCTTCCC
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEEECCEEEEEcCCCCCccCceEEEEECCCCCCCee
Confidence 344555555 22 467888887765333211111111111222356667777654 468999987654
Q ss_pred -eEEEecccCCceEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCceeE--EeccCCCceEEEEEcCCCCEEEEEECC
Q 005096 262 -EERSLTGHGWDVKSVDWHPTKSLLVSGGKD-----SLVKLWDAKSGRELC--SFHGHKNMVLCVKWNQNGNWVLTASKD 333 (715)
Q Consensus 262 -~~~~l~~~~~~I~si~~spdg~~L~sgs~D-----g~I~iwDl~s~~~~~--~~~~~~~~I~sl~~spdg~~Lasgs~d 333 (715)
.+..+.........+.+ ++++++.|+.+ ..+.+||+.+.+-.. .+......-.++.+ ++++++.|+.+
T Consensus 94 ~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~ 169 (301)
T 2vpj_A 94 YSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA--SGVIYCLGGYD 169 (301)
T ss_dssp EEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE--TTEEEEECCBC
T ss_pred EECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE--CCEEEEECCCC
Confidence 22222222222223333 56777777643 358899988764322 22211112222232 56677777654
Q ss_pred -----CeEEEEECCCCeEEEE--eecCCCCeEEEEEccCCCCEEEEEeCC-----CcEEEEEcCCCCceEEEeec-cCCC
Q 005096 334 -----QIIKLYDIRAMKELES--FRGHRKDVTALAWHPFHEEYFVSGSLD-----GSIFHWLVGHETPQVEIHNV-HDNT 400 (715)
Q Consensus 334 -----g~I~iwDl~t~~~~~~--~~~h~~~V~~l~~sp~~~~~l~sgs~D-----G~I~iwd~~~~~~~~~~~~~-h~~~ 400 (715)
..+.+||+.+.+-... +.........+.+ ++.+++.|+.+ ..|.+||..+.......... ....
T Consensus 170 ~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~ 246 (301)
T 2vpj_A 170 GLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL---NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCY 246 (301)
T ss_dssp SSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE---TTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBS
T ss_pred CCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE---CCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccc
Confidence 4689999887654332 2111112222222 56777777764 46888998765432211100 1111
Q ss_pred EEEEEEcCCCCEEEEEECC-----CeEEEEecCC
Q 005096 401 VWDLAWHPIGYLLCSGSND-----HTTKFWCRNR 429 (715)
Q Consensus 401 V~~l~~spdg~~L~sgs~D-----g~I~iWdl~~ 429 (715)
...+.+ ++++++.|+.+ ..|.+||.+.
T Consensus 247 ~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~ 278 (301)
T 2vpj_A 247 VGATVL--RGRLYAIAGYDGNSLLSSIECYDPII 278 (301)
T ss_dssp CEEEEE--TTEEEEECCBCSSSBEEEEEEEETTT
T ss_pred eeEEEE--CCEEEEEcCcCCCcccccEEEEcCCC
Confidence 122222 56777777765 3466676643
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.02 E-value=0.00023 Score=73.68 Aligned_cols=222 Identities=9% Similarity=0.087 Sum_probs=115.2
Q ss_pred EEEEEeC--CCeEEEEeCCCCceEEEEe--ccCCCEEEEEEcCCCCEEEEEeCC----CcEEEEeCCCCceeeeecCCCC
Q 005096 158 RLITGSQ--SGEFTLWNGQSFNFEMILQ--AHDHAIRSMVWSHNDNWMVSGDDG----GAIKYWQNNMNNVKANKSAHKE 229 (715)
Q Consensus 158 ~Latgs~--dg~I~Iwd~~~~~~~~~l~--~h~~~V~~l~~spdg~~L~tgs~d----g~I~iwd~~~~~~~~~~~~h~~ 229 (715)
+++.|+. ...+.+||..+.+....-. .......++.+ ++++++.|+.+ ..+.+||..+++-...-.....
T Consensus 14 l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~ 91 (306)
T 3ii7_A 14 RIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFW--DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTP 91 (306)
T ss_dssp EEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEE--TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSC
T ss_pred EEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEE--CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCcc
Confidence 4555654 3578999988765443211 11112222222 56677777754 6688899887754332211111
Q ss_pred CeEEEEEecCCCEEEEEECC------CcEEEEECCCCeeEEE--ecccCCceEEEEEcCCCCEEEEEeC---------CC
Q 005096 230 SVRDLSFCRTDLKFCSCSDD------TTVKVWDFARCQEERS--LTGHGWDVKSVDWHPTKSLLVSGGK---------DS 292 (715)
Q Consensus 230 ~I~~l~~spd~~~Las~s~D------g~V~iwdl~~~~~~~~--l~~~~~~I~si~~spdg~~L~sgs~---------Dg 292 (715)
.....+..-++++++.|+.+ ..+.+||+.+.+-... +........++.+ ++++++.|+. ..
T Consensus 92 r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~ 169 (306)
T 3ii7_A 92 RDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEA--NGLIYVCGGSLGNNVSGRVLN 169 (306)
T ss_dssp CBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEESCTTTCEECC
T ss_pred ccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEE--CCEEEEECCCCCCCCcccccc
Confidence 11111122266677777654 4689999877653332 1111112222333 4666666653 34
Q ss_pred cEEEEECCCCceeEE--eccCCCceEEEEEcCCCCEEEEEECC-----CeEEEEECCCCeEEE--EeecCCCCeEEEEEc
Q 005096 293 LVKLWDAKSGRELCS--FHGHKNMVLCVKWNQNGNWVLTASKD-----QIIKLYDIRAMKELE--SFRGHRKDVTALAWH 363 (715)
Q Consensus 293 ~I~iwDl~s~~~~~~--~~~~~~~I~sl~~spdg~~Lasgs~d-----g~I~iwDl~t~~~~~--~~~~h~~~V~~l~~s 363 (715)
.+.+||+.+.+-... +......-.++.+ ++++++.|+.+ ..|.+||+.+.+-.. .+........++.+
T Consensus 170 ~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~- 246 (306)
T 3ii7_A 170 SCEVYDPATETWTELCPMIEARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV- 246 (306)
T ss_dssp CEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE-
T ss_pred eEEEeCCCCCeEEECCCccchhhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE-
Confidence 588999987643222 1111111222222 56666666543 468899998754322 22211222233333
Q ss_pred cCCCCEEEEEeCC-----CcEEEEEcCCCC
Q 005096 364 PFHEEYFVSGSLD-----GSIFHWLVGHET 388 (715)
Q Consensus 364 p~~~~~l~sgs~D-----G~I~iwd~~~~~ 388 (715)
++.+++.|+.+ ..|.+||..+..
T Consensus 247 --~~~i~v~GG~~~~~~~~~~~~yd~~~~~ 274 (306)
T 3ii7_A 247 --GSIVYVLAGFQGVGRLGHILEYNTETDK 274 (306)
T ss_dssp --TTEEEEEECBCSSSBCCEEEEEETTTTE
T ss_pred --CCEEEEEeCcCCCeeeeeEEEEcCCCCe
Confidence 66788888754 457777776643
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=97.97 E-value=0.008 Score=63.42 Aligned_cols=229 Identities=10% Similarity=0.109 Sum_probs=128.1
Q ss_pred cCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeee--e----cCCCCCeEEEEEecC---CCEEEEE-E--CCCcE
Q 005096 185 HDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKAN--K----SAHKESVRDLSFCRT---DLKFCSC-S--DDTTV 252 (715)
Q Consensus 185 h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~--~----~~h~~~I~~l~~spd---~~~Las~-s--~Dg~V 252 (715)
.-..-..|+|.+|+++|++--..|.|++++...+..... + .........|+++++ +..|++. + .++.|
T Consensus 30 gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v 109 (347)
T 3das_A 30 GLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRI 109 (347)
T ss_dssp CCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEE
T ss_pred CCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEE
Confidence 345678999999999777765589999998655543211 1 123456789999985 4455443 2 34566
Q ss_pred EEEECCCC----------eeEE-Eec-ccCCceEEEEEcCCCCEEEEEeC-------------CCcEEEEECCCC-----
Q 005096 253 KVWDFARC----------QEER-SLT-GHGWDVKSVDWHPTKSLLVSGGK-------------DSLVKLWDAKSG----- 302 (715)
Q Consensus 253 ~iwdl~~~----------~~~~-~l~-~~~~~I~si~~spdg~~L~sgs~-------------Dg~I~iwDl~s~----- 302 (715)
.-|.+... +.+. .+. ........|+|.+||.++++.++ .|.|.-++.+..
T Consensus 110 ~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~n 189 (347)
T 3das_A 110 VRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGN 189 (347)
T ss_dssp EEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTC
T ss_pred EEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCC
Confidence 66766541 1111 121 11223567999999987777543 244555554422
Q ss_pred ----ceeEEeccCCCceEEEEEcCCCCEEEEEE-CCCeEEEEECCCCeE------------------EEEeecCCCCeEE
Q 005096 303 ----RELCSFHGHKNMVLCVKWNQNGNWVLTAS-KDQIIKLYDIRAMKE------------------LESFRGHRKDVTA 359 (715)
Q Consensus 303 ----~~~~~~~~~~~~I~sl~~spdg~~Lasgs-~dg~I~iwDl~t~~~------------------~~~~~~h~~~V~~ 359 (715)
..+.. .++. ....++|+++++++++=. .|+.-.|.-++.+.. +..+..+......
T Consensus 190 Pf~~~~i~a-~G~R-Np~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap~G 267 (347)
T 3das_A 190 PFPGSPVYS-YGHR-NVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEASPSG 267 (347)
T ss_dssp SSTTCCEEE-BCCS-BCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCCEEE
T ss_pred CCCCCeEEe-eCCC-CcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCCCcc
Confidence 11111 2333 356789999877554432 222222222222211 1222222235567
Q ss_pred EEEccCCCCEEEEEeCCCcEEEEEcCCCC---ceEEEeeccCCCEEEEEEcCCCCEEEEEE
Q 005096 360 LAWHPFHEEYFVSGSLDGSIFHWLVGHET---PQVEIHNVHDNTVWDLAWHPIGYLLCSGS 417 (715)
Q Consensus 360 l~~sp~~~~~l~sgs~DG~I~iwd~~~~~---~~~~~~~~h~~~V~~l~~spdg~~L~sgs 417 (715)
++|. ++.+++..-..+.|....++... ....++......+.+|+..+||.++++.+
T Consensus 268 ~~~~--~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td 326 (347)
T 3das_A 268 IAYA--EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTS 326 (347)
T ss_dssp EEEE--TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred eEEE--cCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence 7776 45666666566677666665442 12334444456789999999887666544
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=97.94 E-value=0.0081 Score=66.05 Aligned_cols=105 Identities=10% Similarity=0.196 Sum_probs=62.9
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceee--eecC------CCCCeEEEEEecC---CCEEEEEEC------
Q 005096 186 DHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKA--NKSA------HKESVRDLSFCRT---DLKFCSCSD------ 248 (715)
Q Consensus 186 ~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~--~~~~------h~~~I~~l~~spd---~~~Las~s~------ 248 (715)
-.....|+|.++++++++-...+.|++++..++.... .+.. ....+..|+|+++ +..|+++..
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~ 105 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS 105 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence 3456799999999977765544578888765444322 2211 2456779999996 555555442
Q ss_pred -------CCcEEEEECCCC--e---eEEE---ec-ccCCceEEEEEcCCCCEEEEEeC
Q 005096 249 -------DTTVKVWDFARC--Q---EERS---LT-GHGWDVKSVDWHPTKSLLVSGGK 290 (715)
Q Consensus 249 -------Dg~V~iwdl~~~--~---~~~~---l~-~~~~~I~si~~spdg~~L~sgs~ 290 (715)
...|..|++... + .... +. ........|+|.+||+++++.++
T Consensus 106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 235666665321 1 1111 21 11234789999999997776553
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.93 E-value=0.00058 Score=70.57 Aligned_cols=223 Identities=8% Similarity=0.013 Sum_probs=112.8
Q ss_pred CEEEEEeC--CCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECC----CcEEEEECCCCeeEEE--ecccC
Q 005096 199 NWMVSGDD--GGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDD----TTVKVWDFARCQEERS--LTGHG 270 (715)
Q Consensus 199 ~~L~tgs~--dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~D----g~V~iwdl~~~~~~~~--l~~~~ 270 (715)
.+++.|+. ...+.+||..+++-...-..........+..-++.+++.|+.+ ..+.+||+.+.+-... +....
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r 92 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFWDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPR 92 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCC
T ss_pred eEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccc
Confidence 34455654 3578889988765432211111111111122366667777654 6788999877653322 22112
Q ss_pred CceEEEEEcCCCCEEEEEeCC------CcEEEEECCCCceeEE--eccCCCceEEEEEcCCCCEEEEEEC---------C
Q 005096 271 WDVKSVDWHPTKSLLVSGGKD------SLVKLWDAKSGRELCS--FHGHKNMVLCVKWNQNGNWVLTASK---------D 333 (715)
Q Consensus 271 ~~I~si~~spdg~~L~sgs~D------g~I~iwDl~s~~~~~~--~~~~~~~I~sl~~spdg~~Lasgs~---------d 333 (715)
.....+.+ ++++++.|+.+ ..+.+||+.+.+-... +........++.+ ++++++.|+. .
T Consensus 93 ~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~ 168 (306)
T 3ii7_A 93 DSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEA--NGLIYVCGGSLGNNVSGRVL 168 (306)
T ss_dssp BSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEESCTTTCEEC
T ss_pred cceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEE--CCEEEEECCCCCCCCccccc
Confidence 22223333 56777777765 4588999987653322 1111111222222 5666666653 3
Q ss_pred CeEEEEECCCCeEEEEeecCC-CCeEEEEEccCCCCEEEEEeCC-----CcEEEEEcCCCCceEEEe-eccCCCEEEEEE
Q 005096 334 QIIKLYDIRAMKELESFRGHR-KDVTALAWHPFHEEYFVSGSLD-----GSIFHWLVGHETPQVEIH-NVHDNTVWDLAW 406 (715)
Q Consensus 334 g~I~iwDl~t~~~~~~~~~h~-~~V~~l~~sp~~~~~l~sgs~D-----G~I~iwd~~~~~~~~~~~-~~h~~~V~~l~~ 406 (715)
..+.+||+.+.+-...-.... ..-.+++.. ++.+++.|+.+ ..|.+||..+........ ........++.+
T Consensus 169 ~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~ 246 (306)
T 3ii7_A 169 NSCEVYDPATETWTELCPMIEARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV 246 (306)
T ss_dssp CCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE
T ss_pred ceEEEeCCCCCeEEECCCccchhhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE
Confidence 458899998765332211111 111222222 56777777653 357888887653221100 001112223333
Q ss_pred cCCCCEEEEEECC-----CeEEEEecCC
Q 005096 407 HPIGYLLCSGSND-----HTTKFWCRNR 429 (715)
Q Consensus 407 spdg~~L~sgs~D-----g~I~iWdl~~ 429 (715)
++++++.|+.+ ..|.+||.+.
T Consensus 247 --~~~i~v~GG~~~~~~~~~~~~yd~~~ 272 (306)
T 3ii7_A 247 --GSIVYVLAGFQGVGRLGHILEYNTET 272 (306)
T ss_dssp --TTEEEEEECBCSSSBCCEEEEEETTT
T ss_pred --CCEEEEEeCcCCCeeeeeEEEEcCCC
Confidence 67778888754 4577777644
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.91 E-value=0.00044 Score=71.36 Aligned_cols=221 Identities=12% Similarity=0.087 Sum_probs=109.3
Q ss_pred CEEEEEeCC----CcEEEEeCCCCceeeeecCCCCCe-EEEEEecCCCEEEEEECC-----CcEEEEECCCCeeEEE--e
Q 005096 199 NWMVSGDDG----GAIKYWQNNMNNVKANKSAHKESV-RDLSFCRTDLKFCSCSDD-----TTVKVWDFARCQEERS--L 266 (715)
Q Consensus 199 ~~L~tgs~d----g~I~iwd~~~~~~~~~~~~h~~~I-~~l~~spd~~~Las~s~D-----g~V~iwdl~~~~~~~~--l 266 (715)
.+++.|+.+ ..+.+||..+.+-...-....... .+++. -++..++.|+.+ ..+.+||..+.+-... +
T Consensus 17 ~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~ 95 (302)
T 2xn4_A 17 LMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVY-MAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANM 95 (302)
T ss_dssp EEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCC
T ss_pred EEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEE-ECCEEEEEeCcCCCccccceEEECCCCCceeeCCCC
Confidence 344555533 357788877765332211111111 12222 256666666644 3588999877643322 1
Q ss_pred cccCCceEEEEEcCCCCEEEEEeCCC-----cEEEEECCCCceeEE--eccCCCceEEEEEcCCCCEEEEEEC-------
Q 005096 267 TGHGWDVKSVDWHPTKSLLVSGGKDS-----LVKLWDAKSGRELCS--FHGHKNMVLCVKWNQNGNWVLTASK------- 332 (715)
Q Consensus 267 ~~~~~~I~si~~spdg~~L~sgs~Dg-----~I~iwDl~s~~~~~~--~~~~~~~I~sl~~spdg~~Lasgs~------- 332 (715)
.........+.+ ++++++.|+.++ .+.+||+.+.+-... +........++.+ ++++++.|+.
T Consensus 96 p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~ 171 (302)
T 2xn4_A 96 RDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV--GGLLYAVGGYDVASRQC 171 (302)
T ss_dssp SSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTTTEE
T ss_pred CccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE--CCEEEEEeCCCCCCCcc
Confidence 111122223333 467777777553 478889887643322 1111111222222 5666666653
Q ss_pred CCeEEEEECCCCeEEEE--eecCCCCeEEEEEccCCCCEEEEEeCC-----CcEEEEEcCCCCceEEEeecc-CCCEEEE
Q 005096 333 DQIIKLYDIRAMKELES--FRGHRKDVTALAWHPFHEEYFVSGSLD-----GSIFHWLVGHETPQVEIHNVH-DNTVWDL 404 (715)
Q Consensus 333 dg~I~iwDl~t~~~~~~--~~~h~~~V~~l~~sp~~~~~l~sgs~D-----G~I~iwd~~~~~~~~~~~~~h-~~~V~~l 404 (715)
...+.+||+.+.+-... +.........+.+ ++.+++.|+.+ ..|.+||..+........... ......+
T Consensus 172 ~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~ 248 (302)
T 2xn4_A 172 LSTVECYNATTNEWTYIAEMSTRRSGAGVGVL---NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVC 248 (302)
T ss_dssp CCCEEEEETTTTEEEEECCCSSCCBSCEEEEE---TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEE
T ss_pred ccEEEEEeCCCCcEEECCCCccccccccEEEE---CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEE
Confidence 24588999987654332 2211112222222 67777777754 368888887654321111000 1111122
Q ss_pred EEcCCCCEEEEEECCC-----eEEEEecCC
Q 005096 405 AWHPIGYLLCSGSNDH-----TTKFWCRNR 429 (715)
Q Consensus 405 ~~spdg~~L~sgs~Dg-----~I~iWdl~~ 429 (715)
.+ ++++++.|+.++ .|.+||.+.
T Consensus 249 ~~--~~~i~v~GG~~~~~~~~~v~~yd~~~ 276 (302)
T 2xn4_A 249 AV--NGLLYVVGGDDGSCNLASVEYYNPTT 276 (302)
T ss_dssp EE--TTEEEEECCBCSSSBCCCEEEEETTT
T ss_pred EE--CCEEEEECCcCCCcccccEEEEcCCC
Confidence 22 567777777653 367777643
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=97.90 E-value=0.0047 Score=65.53 Aligned_cols=238 Identities=11% Similarity=0.092 Sum_probs=127.9
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeee-------cCCCCCeEEEEEecC---CCEEEEEEC--------
Q 005096 187 HAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANK-------SAHKESVRDLSFCRT---DLKFCSCSD-------- 248 (715)
Q Consensus 187 ~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~-------~~h~~~I~~l~~spd---~~~Las~s~-------- 248 (715)
.....|+|.+++++|+++..+|.|++++.+ +.....+ .........|+++++ +..|+++..
T Consensus 18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~ 96 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKA 96 (353)
T ss_dssp SSEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCE
T ss_pred CCcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCc
Confidence 456799999999834455667999999853 2221111 112345689999996 555554432
Q ss_pred CCcEEEEECCCC----eeEE-Eecc------cCCceEEEEEcCCCCEEEEEeCC-------------CcEEEEECCCCc-
Q 005096 249 DTTVKVWDFARC----QEER-SLTG------HGWDVKSVDWHPTKSLLVSGGKD-------------SLVKLWDAKSGR- 303 (715)
Q Consensus 249 Dg~V~iwdl~~~----~~~~-~l~~------~~~~I~si~~spdg~~L~sgs~D-------------g~I~iwDl~s~~- 303 (715)
...|..|++... .... .+.. .......|+|.+||.++++.+.. +.|.-+|.+..-
T Consensus 97 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p 176 (353)
T 2g8s_A 97 GTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIP 176 (353)
T ss_dssp EEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCC
T ss_pred eeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCC
Confidence 235666766432 1111 1211 11224679999999766554432 457667765320
Q ss_pred -----------eeEEeccCCCceEEEEEcCCCCEEEEEECCC--eEEEEECCCCeE------------------------
Q 005096 304 -----------ELCSFHGHKNMVLCVKWNQNGNWVLTASKDQ--IIKLYDIRAMKE------------------------ 346 (715)
Q Consensus 304 -----------~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg--~I~iwDl~t~~~------------------------ 346 (715)
....+.........++|+++...|+++.... .=.|.-+..+..
T Consensus 177 ~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~~~ 256 (353)
T 2g8s_A 177 DDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKGEI 256 (353)
T ss_dssp TTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCBSS
T ss_pred CCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccCCC
Confidence 1112221223477899999433444443221 112222221111
Q ss_pred -------EEEeecCCCCeEEEEEccC------CCCEEEEEeCCCcEEEEEcCCCCceE--EEeeccCCCEEEEEEcCCCC
Q 005096 347 -------LESFRGHRKDVTALAWHPF------HEEYFVSGSLDGSIFHWLVGHETPQV--EIHNVHDNTVWDLAWHPIGY 411 (715)
Q Consensus 347 -------~~~~~~h~~~V~~l~~sp~------~~~~l~sgs~DG~I~iwd~~~~~~~~--~~~~~h~~~V~~l~~spdg~ 411 (715)
+..+. +......++|... .+.++++.-..+.|...+++...... .++......+..+++.+||.
T Consensus 257 ~~~~~~P~~~~~-~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~ 335 (353)
T 2g8s_A 257 VAGTEQPVFYWK-DSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGY 335 (353)
T ss_dssp CTTSCCCSEEES-SCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSC
T ss_pred CCCccCCeEEeC-CCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCc
Confidence 11111 2235677787642 35677776677788888876542221 12222335799999999998
Q ss_pred EEEEEECCCeEEEEec
Q 005096 412 LLCSGSNDHTTKFWCR 427 (715)
Q Consensus 412 ~L~sgs~Dg~I~iWdl 427 (715)
++++.. +..=+||.+
T Consensus 336 lyv~td-~~~g~I~ri 350 (353)
T 2g8s_A 336 LYVLTD-ESSGELLKV 350 (353)
T ss_dssp EEEEEC-STTEEEEEE
T ss_pred EEEEEe-CCCCEEEEE
Confidence 666433 223355655
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=97.89 E-value=0.00025 Score=73.60 Aligned_cols=222 Identities=10% Similarity=0.084 Sum_probs=113.9
Q ss_pred CCCEEEEEeCC----CeEEEEeCCCCceEEEEecc--CCCEEEEEEcCCCCEEEEEeC----C-----CcEEEEeCCCCc
Q 005096 155 TGRRLITGSQS----GEFTLWNGQSFNFEMILQAH--DHAIRSMVWSHNDNWMVSGDD----G-----GAIKYWQNNMNN 219 (715)
Q Consensus 155 dg~~Latgs~d----g~I~Iwd~~~~~~~~~l~~h--~~~V~~l~~spdg~~L~tgs~----d-----g~I~iwd~~~~~ 219 (715)
++.+++.|+.+ ..+.+||..+.+....-... .... +++.. ++++++.|+. + ..+.+||..+.+
T Consensus 24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~ 101 (308)
T 1zgk_A 24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGL-AGCVV-GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQ 101 (308)
T ss_dssp CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSC-EEEEE-TTEEEEECCEEEETTEEEECCCEEEEETTTTE
T ss_pred CCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccc-eEEEE-CCEEEEECCCcCCCCCCeecceEEEECCCCCe
Confidence 55666777632 36889998876544331111 1111 22222 5666677665 2 468888988765
Q ss_pred eeeeecCC--CCCeEEEEEecCCCEEEEEECC-----CcEEEEECCCCeeEEE--ecccCCceEEEEEcCCCCEEEEEeC
Q 005096 220 VKANKSAH--KESVRDLSFCRTDLKFCSCSDD-----TTVKVWDFARCQEERS--LTGHGWDVKSVDWHPTKSLLVSGGK 290 (715)
Q Consensus 220 ~~~~~~~h--~~~I~~l~~spd~~~Las~s~D-----g~V~iwdl~~~~~~~~--l~~~~~~I~si~~spdg~~L~sgs~ 290 (715)
-...-... ......+.+ ++++++.|+.+ ..+.+||+.+.+-... +........++.+ ++++++.|+.
T Consensus 102 W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~ 177 (308)
T 1zgk_A 102 WSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGF 177 (308)
T ss_dssp EEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCB
T ss_pred EeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEEEeCC
Confidence 33322111 111222222 56666666533 4688999877543322 1111122223333 5677777765
Q ss_pred C-----CcEEEEECCCCceeEE--eccCCCceEEEEEcCCCCEEEEEECC-----CeEEEEECCCCeEEEE--eecCCCC
Q 005096 291 D-----SLVKLWDAKSGRELCS--FHGHKNMVLCVKWNQNGNWVLTASKD-----QIIKLYDIRAMKELES--FRGHRKD 356 (715)
Q Consensus 291 D-----g~I~iwDl~s~~~~~~--~~~~~~~I~sl~~spdg~~Lasgs~d-----g~I~iwDl~t~~~~~~--~~~h~~~ 356 (715)
+ ..+.+||+.+.+-... +........++.+ ++++++.|+.+ ..|.+||+.+.+-... +......
T Consensus 178 ~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~ 255 (308)
T 1zgk_A 178 DGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSA 255 (308)
T ss_dssp CSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBS
T ss_pred CCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccc
Confidence 4 4588999887543221 1111112223333 56677777654 5699999987653322 1111111
Q ss_pred eEEEEEccCCCCEEEEEeCCC-----cEEEEEcCCC
Q 005096 357 VTALAWHPFHEEYFVSGSLDG-----SIFHWLVGHE 387 (715)
Q Consensus 357 V~~l~~sp~~~~~l~sgs~DG-----~I~iwd~~~~ 387 (715)
. +++.. ++.+++.|+.++ .|.+||..+.
T Consensus 256 ~-~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~ 288 (308)
T 1zgk_A 256 L-GITVH--QGRIYVLGGYDGHTFLDSVECYDPDTD 288 (308)
T ss_dssp C-EEEEE--TTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred e-EEEEE--CCEEEEEcCcCCCcccceEEEEcCCCC
Confidence 2 22222 567777776443 4666776554
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=97.88 E-value=0.021 Score=69.94 Aligned_cols=232 Identities=12% Similarity=0.079 Sum_probs=135.1
Q ss_pred EEEEcCC--CCEEEEEeCCCcEEEEeCCCCc-eeeeecCCCCCeEEEEEecCCCEEEEEECC------------------
Q 005096 191 SMVWSHN--DNWMVSGDDGGAIKYWQNNMNN-VKANKSAHKESVRDLSFCRTDLKFCSCSDD------------------ 249 (715)
Q Consensus 191 ~l~~spd--g~~L~tgs~dg~I~iwd~~~~~-~~~~~~~h~~~I~~l~~spd~~~Las~s~D------------------ 249 (715)
...|+.. .+-++..+ ++.++|..++... ...........+..++++++.+.++.+..+
T Consensus 697 ~~~F~se~~~~g~v~~~-~~~LrI~~i~~~~~~~~~~ipL~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 775 (1158)
T 3ei3_A 697 MCPLNSDGYPDSLALAN-NSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSAS 775 (1158)
T ss_dssp EEEECCSSSTTEEEEEC-SSCEEEEEECCSSSEEEEEEECSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHH
T ss_pred EeccCcccCCCcEEEEc-CCceEEEEecccCCeeEEEEeCCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhh
Confidence 3445432 23455444 4558888765432 222222344577788888777665443311
Q ss_pred -------------------------------CcEEEEECCCCeeEEEeccc-CCceEEEE---EcCC-CCEEEEEe----
Q 005096 250 -------------------------------TTVKVWDFARCQEERSLTGH-GWDVKSVD---WHPT-KSLLVSGG---- 289 (715)
Q Consensus 250 -------------------------------g~V~iwdl~~~~~~~~l~~~-~~~I~si~---~spd-g~~L~sgs---- 289 (715)
+.|+++|-.+.+.+..+.-. ...+.+++ |..+ ..+|++|+
T Consensus 776 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~ 855 (1158)
T 3ei3_A 776 TQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVY 855 (1158)
T ss_dssp HHCSEEEECCCCCC----------CCCEEEEEEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECC
T ss_pred hhhhhhcccccccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecC
Confidence 23666676666655544322 22344444 4333 46888876
Q ss_pred ------CCCcEEEEECCCCceeEEe-ccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEE-EeecCCCCeE--E
Q 005096 290 ------KDSLVKLWDAKSGRELCSF-HGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELE-SFRGHRKDVT--A 359 (715)
Q Consensus 290 ------~Dg~I~iwDl~s~~~~~~~-~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~-~~~~h~~~V~--~ 359 (715)
..|.|++|++..++..... +..++.+++++-- +| +|+++- ..+|+|||+...+.+. ...... .|. .
T Consensus 856 ~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~-~g-~Lla~i-g~~l~vy~l~~~~~L~~~~~~~~-~i~~~~ 931 (1158)
T 3ei3_A 856 PEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEF-NG-KLLASI-NSTVRLYEWTTEKELRTECNHYN-NIMALY 931 (1158)
T ss_dssp TTCSSCCCEEEEEEEEETTEEEEEEEEEESSCEEEEEEE-TT-EEEEEE-TTEEEEEEECTTSCEEEEEEECC-CSCEEE
T ss_pred CCCCCCCceEEEEEEEECCEEEEEEEEEcCCcCEEEeee-CC-EEEEEc-CCEEEEEECCCCceEEEEeeccc-cEEEEE
Confidence 3478999998744322111 2346778888744 35 455543 5789999998665444 111122 233 4
Q ss_pred EEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEe--eccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCCCC
Q 005096 360 LAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIH--NVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPG 431 (715)
Q Consensus 360 l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~--~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~ 431 (715)
+.. .+++|++|+.-..|.++.++......... ......++++.+-.+ ..++.+..+|.|.+...+...
T Consensus 932 l~~---~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~a~D~~~~~vta~~~ld~-~t~l~aD~~gNl~vl~~~~~~ 1001 (1158)
T 3ei3_A 932 LKT---KGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDD-DNFLGAENAFNLFVCQKDSAA 1001 (1158)
T ss_dssp EEE---ETTEEEEEESSBCEEEEEEETTTTEEEEEEECCSCBCEEEEEEEET-TEEEEEETTSEEEEEEECTTC
T ss_pred Eec---cCCEEEEEEhhheEEEEEEEcCCCeEEEEEeecccccEEEEEEEcc-CcEEEEcCCCcEEEEecCCCC
Confidence 433 46788888887788777665443333332 234567888888755 467889999999999887643
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=97.86 E-value=0.0043 Score=65.84 Aligned_cols=226 Identities=10% Similarity=0.094 Sum_probs=122.8
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEE-------eccCCCEEEEEEcCC---CCEEEEEe-C-------
Q 005096 145 CSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMIL-------QAHDHAIRSMVWSHN---DNWMVSGD-D------- 206 (715)
Q Consensus 145 ~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l-------~~h~~~V~~l~~spd---g~~L~tgs-~------- 206 (715)
..-..|+|.++|++|+++..+|.|++++.. ++....+ .........|+|+++ +.+|+++. .
T Consensus 18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~ 96 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKA 96 (353)
T ss_dssp SSEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCE
T ss_pred CCcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCc
Confidence 356899999999845566678999999853 2221111 122346789999996 55555443 2
Q ss_pred CCcEEEEeCCCC-----ceeeeecC------CCCCeEEEEEecCCCEEEEEEC-------------CCcEEEEECCCCe-
Q 005096 207 GGAIKYWQNNMN-----NVKANKSA------HKESVRDLSFCRTDLKFCSCSD-------------DTTVKVWDFARCQ- 261 (715)
Q Consensus 207 dg~I~iwd~~~~-----~~~~~~~~------h~~~I~~l~~spd~~~Las~s~-------------Dg~V~iwdl~~~~- 261 (715)
...|..|+++.. .....+.. .......|+|.+|+.++++.+. .++|..+|.+...
T Consensus 97 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p 176 (353)
T 2g8s_A 97 GTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIP 176 (353)
T ss_dssp EEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCC
T ss_pred eeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCC
Confidence 234666665432 11111111 1122467999999965555433 2457667654320
Q ss_pred -----------eEEEecccCCceEEEEEcCCCCEEEEEeCCC--cEEEEECCCCc-------------------------
Q 005096 262 -----------EERSLTGHGWDVKSVDWHPTKSLLVSGGKDS--LVKLWDAKSGR------------------------- 303 (715)
Q Consensus 262 -----------~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg--~I~iwDl~s~~------------------------- 303 (715)
....+.........++|+++...|+++.... .=.|.-+..+.
T Consensus 177 ~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~~~ 256 (353)
T 2g8s_A 177 DDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKGEI 256 (353)
T ss_dssp TTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCBSS
T ss_pred CCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccCCC
Confidence 1112221223467899999444444443321 11222121111
Q ss_pred ------eeEEeccCCCceEEEEEcC-------CCCEEEEEECCCeEEEEECCCCeEEEE--e-ecCCCCeEEEEEccCCC
Q 005096 304 ------ELCSFHGHKNMVLCVKWNQ-------NGNWVLTASKDQIIKLYDIRAMKELES--F-RGHRKDVTALAWHPFHE 367 (715)
Q Consensus 304 ------~~~~~~~~~~~I~sl~~sp-------dg~~Lasgs~dg~I~iwDl~t~~~~~~--~-~~h~~~V~~l~~sp~~~ 367 (715)
.+..+. +......++|.. +++++++....+.|...+++.++.+.. + ......+..|++.+ ++
T Consensus 257 ~~~~~~P~~~~~-~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~p-dG 334 (353)
T 2g8s_A 257 VAGTEQPVFYWK-DSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGP-DG 334 (353)
T ss_dssp CTTSCCCSEEES-SCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECT-TS
T ss_pred CCCccCCeEEeC-CCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECC-CC
Confidence 111222 223466777753 466666666778888888876654433 2 22345788999998 55
Q ss_pred CEEEEE
Q 005096 368 EYFVSG 373 (715)
Q Consensus 368 ~~l~sg 373 (715)
.++++.
T Consensus 335 ~lyv~t 340 (353)
T 2g8s_A 335 YLYVLT 340 (353)
T ss_dssp CEEEEE
T ss_pred cEEEEE
Confidence 655543
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.82 E-value=0.0012 Score=68.67 Aligned_cols=208 Identities=10% Similarity=0.064 Sum_probs=104.5
Q ss_pred EEEEeCCCeEEEEeCCCCceEEEE-eccCCCEEEEEEcCCCCEEEEEeC-----C------CcEEEEeCCCCceeeeecC
Q 005096 159 LITGSQSGEFTLWNGQSFNFEMIL-QAHDHAIRSMVWSHNDNWMVSGDD-----G------GAIKYWQNNMNNVKANKSA 226 (715)
Q Consensus 159 Latgs~dg~I~Iwd~~~~~~~~~l-~~h~~~V~~l~~spdg~~L~tgs~-----d------g~I~iwd~~~~~~~~~~~~ 226 (715)
++.|+ ..+.+||..+.+-...- ..........+...++++++.|+. . ..+.+||..+.+-...-..
T Consensus 8 ~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~ 85 (315)
T 4asc_A 8 FMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPL 85 (315)
T ss_dssp EEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCB
T ss_pred EEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCC
Confidence 44555 56999999887754311 111122223333447778888773 1 1267788877653322111
Q ss_pred CCCCe-EEEEEecCCCEEEEEECC--------CcEEEEECCCCeeEEE--ecccCCceEEEEEcCCCCEEEEEeC-C---
Q 005096 227 HKESV-RDLSFCRTDLKFCSCSDD--------TTVKVWDFARCQEERS--LTGHGWDVKSVDWHPTKSLLVSGGK-D--- 291 (715)
Q Consensus 227 h~~~I-~~l~~spd~~~Las~s~D--------g~V~iwdl~~~~~~~~--l~~~~~~I~si~~spdg~~L~sgs~-D--- 291 (715)
..... .+++.. +++.++.|+.+ ..+.+||+.+.+-... +........++.+ ++++++.|+. +
T Consensus 86 p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~ 162 (315)
T 4asc_A 86 PSPRCLFGLGEA-LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSH--MDLVYVIGGKGSDRK 162 (315)
T ss_dssp SSCEESCEEEEE-TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCTTSC
T ss_pred CcchhceeEEEE-CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEE--CCEEEEEeCCCCCCc
Confidence 11111 112222 55666666632 4589999977543221 1111122222332 4667777765 2
Q ss_pred --CcEEEEECCCCceeEE--eccCCCceEEEEEcCCCCEEEEEECCC-----eEEEEECCCCeEEEEee--cCCCCeEEE
Q 005096 292 --SLVKLWDAKSGRELCS--FHGHKNMVLCVKWNQNGNWVLTASKDQ-----IIKLYDIRAMKELESFR--GHRKDVTAL 360 (715)
Q Consensus 292 --g~I~iwDl~s~~~~~~--~~~~~~~I~sl~~spdg~~Lasgs~dg-----~I~iwDl~t~~~~~~~~--~h~~~V~~l 360 (715)
..+.+||+.+.+-... +........++.+ ++++++.|+.++ .+.+||+.+.+-...-. ........+
T Consensus 163 ~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~ 240 (315)
T 4asc_A 163 CLNKMCVYDPKKFEWKELAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLV 240 (315)
T ss_dssp BCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCEEE
T ss_pred ccceEEEEeCCCCeEEECCCCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccceeEE
Confidence 4689999887542221 1111111222333 567777777554 58899998764333221 111122222
Q ss_pred EEccCCCCEEEEEeCC
Q 005096 361 AWHPFHEEYFVSGSLD 376 (715)
Q Consensus 361 ~~sp~~~~~l~sgs~D 376 (715)
.+ ++.+++.|+.+
T Consensus 241 ~~---~~~l~v~GG~~ 253 (315)
T 4asc_A 241 SL---VGTLYAIGGFA 253 (315)
T ss_dssp EE---TTEEEEEEEEE
T ss_pred EE---CCEEEEECCcc
Confidence 22 56777777653
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=97.79 E-value=0.0086 Score=62.04 Aligned_cols=233 Identities=6% Similarity=0.006 Sum_probs=126.7
Q ss_pred CCCCEEEEEeC--CCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCC--------------CcEEEEeCCC
Q 005096 154 PTGRRLITGSQ--SGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDG--------------GAIKYWQNNM 217 (715)
Q Consensus 154 pdg~~Latgs~--dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~d--------------g~I~iwd~~~ 217 (715)
.++.+|+.... ++.|+..+.+..+..+.... . +--++.++++|+.+... ..|+..+++.
T Consensus 23 ~~g~~iy~~n~~d~~~ly~~~~dg~~~~~l~~~---~--~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg 97 (302)
T 3s25_A 23 ESDGEVFFSNTNDNGRLYAMNIDGSNIHKLSND---T--AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNG 97 (302)
T ss_dssp EETTEEEEEEGGGTTEEEEEETTSCSCEEEEEE---E--EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTS
T ss_pred EeCCEEEEEeCCCCceEEEEcCCCCCCEEccCC---c--eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCC
Confidence 46777776642 56677777665444433321 1 33456788888766442 3567777776
Q ss_pred CceeeeecCCCCCeEEEEEecCCCEEEEEE----CCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeC-CC
Q 005096 218 NNVKANKSAHKESVRDLSFCRTDLKFCSCS----DDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGK-DS 292 (715)
Q Consensus 218 ~~~~~~~~~h~~~I~~l~~spd~~~Las~s----~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~-Dg 292 (715)
.+...... .. +..|+.++++|+-.. .+..|+..+++... ...+..+.. .+|+++++.|+..+. ..
T Consensus 98 ~~~~~l~~---~~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~-~~~lt~~~~----~~~~~~g~~iy~t~~g~~ 167 (302)
T 3s25_A 98 HGSTVLDP---DP--CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEE-KKKIKNHYL----FTCNTSDRYFYYNNPKNG 167 (302)
T ss_dssp CCCEEEEC---SC--EEEEEEETTEEEEEEESSSSCEEEEEEETTSCC-CEEEESSCC----CCSEEETTEEEEECTTTC
T ss_pred CcceEeec---CC--ccEEEEeCCEEEEEeecCCCCceEEEEECCCCC-eEEEeCCCc----eEeeEECCEEEEEeCCCc
Confidence 65333221 11 235677888888776 34456666665433 333433322 345667887776665 56
Q ss_pred cEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECC--CeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEE
Q 005096 293 LVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKD--QIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYF 370 (715)
Q Consensus 293 ~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~d--g~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l 370 (715)
.|.+.++..+.....+.+ ... ..++|++++|+....+ ..|..-++.... ...+. ...+.. |++ ++.+|
T Consensus 168 ~Iy~~~l~g~~~~~l~~~---~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~-~~~Lt--~~~~~~--~~~-~g~~I 237 (302)
T 3s25_A 168 QLYRYDTASQSEALFYDC---NCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPN-PVVLT--EANIEH--YNV-YGSLI 237 (302)
T ss_dssp CEEEEETTTTEEEEEECS---CEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCC-CEECS--CSCEEE--EEE-ETTEE
T ss_pred eEEEEECCCCCEEEEeCC---Ccc-ceeeecCCEEEEEEcCCCcEEEEEECCCCC-eEEEe--CCCcce--EEE-CCCEE
Confidence 788888876654444432 222 3356889998877644 367676776443 33332 223333 556 45555
Q ss_pred EEEeC--CCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEE
Q 005096 371 VSGSL--DGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGS 417 (715)
Q Consensus 371 ~sgs~--DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs 417 (715)
+-++. .+.|..-+++.... ..+... .+..+.. .+.+|+-..
T Consensus 238 y~~~~~~~~~i~~~~~DG~~r-~~l~~~---~~~~i~i--~~d~Iy~td 280 (302)
T 3s25_A 238 FYQRGGDNPALCVVKNDGTGF-KELAKG---EFCNINV--TSQYVYFTD 280 (302)
T ss_dssp EEEECSSSCEEEEEETTSCCC-EEEEES---CEEEEEE--CSSEEEEEE
T ss_pred EEEECCCCcEEEEEECCCCcc-EEeeCC---ccceEEE--eCCEEEEEE
Confidence 54432 34555555544332 233321 3444444 445555444
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=97.77 E-value=0.016 Score=61.24 Aligned_cols=202 Identities=9% Similarity=0.103 Sum_probs=117.4
Q ss_pred cEEEEEEcCCCCEEEEE------------eCCCeEEEEeCCCC--ceE-EEEec-----cCCCEEEEEEcC--CCC-EEE
Q 005096 146 SINRVLWTPTGRRLITG------------SQSGEFTLWNGQSF--NFE-MILQA-----HDHAIRSMVWSH--NDN-WMV 202 (715)
Q Consensus 146 ~I~~l~~spdg~~Latg------------s~dg~I~Iwd~~~~--~~~-~~l~~-----h~~~V~~l~~sp--dg~-~L~ 202 (715)
..-.|++.++|..++++ ..+|.|.++|.++. +.. ..+.+ .......|.+.. +++ +|+
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~ 130 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL 130 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence 44566678887544443 16899999998742 221 12222 224677777755 343 454
Q ss_pred EEe-C--CCcEEEEeCCCCc----eeeeecC-CCCCeEEEEEecCCCEEEEEEC-----------------CCcEEEEEC
Q 005096 203 SGD-D--GGAIKYWQNNMNN----VKANKSA-HKESVRDLSFCRTDLKFCSCSD-----------------DTTVKVWDF 257 (715)
Q Consensus 203 tgs-~--dg~I~iwd~~~~~----~~~~~~~-h~~~I~~l~~spd~~~Las~s~-----------------Dg~V~iwdl 257 (715)
++. . +..|.||+++... .+..+.. .-...+++++.+++.++++... .|.|..+|.
T Consensus 131 Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~ 210 (355)
T 3sre_A 131 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP 210 (355)
T ss_dssp EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT
T ss_pred EEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC
Confidence 442 2 4678888766532 1222222 2346789999999987776541 244555554
Q ss_pred CCCeeEEEecccCCceEEEEEcCCCCEEEEEe-CCCcEEEEECCC-Cce--eEEeccCCCceEEEEEcC-CCCEEEEEEC
Q 005096 258 ARCQEERSLTGHGWDVKSVDWHPTKSLLVSGG-KDSLVKLWDAKS-GRE--LCSFHGHKNMVLCVKWNQ-NGNWVLTASK 332 (715)
Q Consensus 258 ~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs-~Dg~I~iwDl~s-~~~--~~~~~~~~~~I~sl~~sp-dg~~Lasgs~ 332 (715)
++ +..+...-..-+.|+|++|++.|+++. ..+.|..||++. ++. ...+ ........+++.. +|++.+++..
T Consensus 211 --~~-~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~lwva~~~ 286 (355)
T 3sre_A 211 --ND-VRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLWVGCHP 286 (355)
T ss_dssp --TC-CEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCEEEEEES
T ss_pred --Ce-EEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCcEEEEecC
Confidence 32 222222334568999999998777665 567899999863 322 1233 2345678899998 5987776654
Q ss_pred C-CeEEEEECC--CCeEEEEee
Q 005096 333 D-QIIKLYDIR--AMKELESFR 351 (715)
Q Consensus 333 d-g~I~iwDl~--t~~~~~~~~ 351 (715)
+ +.|..||-. .+..+..+.
T Consensus 287 ~g~~v~~~~P~~~~~s~v~rI~ 308 (355)
T 3sre_A 287 NGMRIFFYDAENPPGSEVLRIQ 308 (355)
T ss_dssp CHHHHHSCCTTSCCCEEEEEEE
T ss_pred CceEEEEECCCCCCCCEEEEEE
Confidence 4 344444443 244444443
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=97.69 E-value=0.038 Score=58.24 Aligned_cols=227 Identities=10% Similarity=0.108 Sum_probs=123.3
Q ss_pred CCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEE------eccCCCEEEEEEcCC---CCEEEEE---eCCCcE
Q 005096 143 NRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMIL------QAHDHAIRSMVWSHN---DNWMVSG---DDGGAI 210 (715)
Q Consensus 143 H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l------~~h~~~V~~l~~spd---g~~L~tg---s~dg~I 210 (715)
.-..-..|+|.+||++|++-...|.|++++..+++..... .........|+|+++ +.+|++. ..++.|
T Consensus 30 gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v 109 (347)
T 3das_A 30 GLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRI 109 (347)
T ss_dssp CCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEE
T ss_pred CCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEE
Confidence 3456789999999987666655899999987655543221 123466889999985 4455443 234556
Q ss_pred EEEeCCCC--------ceee---eec-CCCCCeEEEEEecCCCEEEEEEC-------------CCcEEEEECCCCe----
Q 005096 211 KYWQNNMN--------NVKA---NKS-AHKESVRDLSFCRTDLKFCSCSD-------------DTTVKVWDFARCQ---- 261 (715)
Q Consensus 211 ~iwd~~~~--------~~~~---~~~-~h~~~I~~l~~spd~~~Las~s~-------------Dg~V~iwdl~~~~---- 261 (715)
.-|.+..+ +... .+. ........|+|.+|+.++++.++ .|.|.-++.+..-
T Consensus 110 ~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~n 189 (347)
T 3das_A 110 VRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGN 189 (347)
T ss_dssp EEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTC
T ss_pred EEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCC
Confidence 55655431 1111 111 11223467999999987776543 3555555553220
Q ss_pred ---eEEEe-cccCCceEEEEEcCCCCEEEEEe-CCCcEEEEECCCCc------------------eeEEeccCCCceEEE
Q 005096 262 ---EERSL-TGHGWDVKSVDWHPTKSLLVSGG-KDSLVKLWDAKSGR------------------ELCSFHGHKNMVLCV 318 (715)
Q Consensus 262 ---~~~~l-~~~~~~I~si~~spdg~~L~sgs-~Dg~I~iwDl~s~~------------------~~~~~~~~~~~I~sl 318 (715)
....+ .++ .....++|++++.++++-. .|+.-.|.-++.+. .+..+..+......+
T Consensus 190 Pf~~~~i~a~G~-RNp~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap~G~ 268 (347)
T 3das_A 190 PFPGSPVYSYGH-RNVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEASPSGI 268 (347)
T ss_dssp SSTTCCEEEBCC-SBCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCCEEEE
T ss_pred CCCCCeEEeeCC-CCcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCCCcce
Confidence 01122 233 3456899999877555432 22222222222221 122222222345667
Q ss_pred EEcCCCCEEEEEECCCeEEEEECCCCeE----EEEeecCCCCeEEEEEccCCCCEEEE
Q 005096 319 KWNQNGNWVLTASKDQIIKLYDIRAMKE----LESFRGHRKDVTALAWHPFHEEYFVS 372 (715)
Q Consensus 319 ~~spdg~~Lasgs~dg~I~iwDl~t~~~----~~~~~~h~~~V~~l~~sp~~~~~l~s 372 (715)
+|. ++..++..-..+.|....++.... ...+.+....+..|+..+ ++.++++
T Consensus 269 ~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~p-DG~lyv~ 324 (347)
T 3das_A 269 AYA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAG-GDKLWLV 324 (347)
T ss_dssp EEE-TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEE-TTEEEEE
T ss_pred EEE-cCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECC-CCcEEEE
Confidence 776 455555555566777677665432 222333346788888887 4444443
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=97.68 E-value=0.001 Score=68.88 Aligned_cols=222 Identities=10% Similarity=0.010 Sum_probs=109.3
Q ss_pred CCCEEEEEeC----CCcEEEEeCCCCceeeeecCCCCCe-EEEEEecCCCEEEEEEC----C-----CcEEEEECCCCee
Q 005096 197 NDNWMVSGDD----GGAIKYWQNNMNNVKANKSAHKESV-RDLSFCRTDLKFCSCSD----D-----TTVKVWDFARCQE 262 (715)
Q Consensus 197 dg~~L~tgs~----dg~I~iwd~~~~~~~~~~~~h~~~I-~~l~~spd~~~Las~s~----D-----g~V~iwdl~~~~~ 262 (715)
++.+++.|+. -..+.+||..+.+-...-....... .+++. -++.+++.|+. + ..+.+||+.+.+-
T Consensus 24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W 102 (308)
T 1zgk_A 24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCV-VGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQW 102 (308)
T ss_dssp CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCEEEETTEEEECCCEEEEETTTTEE
T ss_pred CCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEE-ECCEEEEECCCcCCCCCCeecceEEEECCCCCeE
Confidence 4555566653 2457888877765333211111111 12222 25666666654 2 4688999877643
Q ss_pred EEE--ecccCCceEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCceeEE--eccCCCceEEEEEcCCCCEEEEEECC
Q 005096 263 ERS--LTGHGWDVKSVDWHPTKSLLVSGGKD-----SLVKLWDAKSGRELCS--FHGHKNMVLCVKWNQNGNWVLTASKD 333 (715)
Q Consensus 263 ~~~--l~~~~~~I~si~~spdg~~L~sgs~D-----g~I~iwDl~s~~~~~~--~~~~~~~I~sl~~spdg~~Lasgs~d 333 (715)
... +.........+.+ ++++++.|+.+ ..+.+||+.+.+-... +........++.+ ++++++.|+.+
T Consensus 103 ~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~ 178 (308)
T 1zgk_A 103 SPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFD 178 (308)
T ss_dssp EECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBC
T ss_pred eECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEEEeCCC
Confidence 322 1111122223333 56777776643 3588999887543221 1111112223333 56666776654
Q ss_pred -----CeEEEEECCCCeEEEE--eecCCCCeEEEEEccCCCCEEEEEeCC-----CcEEEEEcCCCCceEEEeec-cCCC
Q 005096 334 -----QIIKLYDIRAMKELES--FRGHRKDVTALAWHPFHEEYFVSGSLD-----GSIFHWLVGHETPQVEIHNV-HDNT 400 (715)
Q Consensus 334 -----g~I~iwDl~t~~~~~~--~~~h~~~V~~l~~sp~~~~~l~sgs~D-----G~I~iwd~~~~~~~~~~~~~-h~~~ 400 (715)
..+.+||+.+.+-... +.........+.+ ++.+++.|+.+ ..|.+||+.+.......... ....
T Consensus 179 ~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~ 255 (308)
T 1zgk_A 179 GTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL---HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSA 255 (308)
T ss_dssp SSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE---TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBS
T ss_pred CCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE---CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccc
Confidence 4689999887653322 1111112222232 66777777654 46888998765322111000 0111
Q ss_pred EEEEEEcCCCCEEEEEECC-----CeEEEEecC
Q 005096 401 VWDLAWHPIGYLLCSGSND-----HTTKFWCRN 428 (715)
Q Consensus 401 V~~l~~spdg~~L~sgs~D-----g~I~iWdl~ 428 (715)
...+.+ ++++++.|+.+ ..|.+||.+
T Consensus 256 ~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~ 286 (308)
T 1zgk_A 256 LGITVH--QGRIYVLGGYDGHTFLDSVECYDPD 286 (308)
T ss_dssp CEEEEE--TTEEEEECCBCSSCBCCEEEEEETT
T ss_pred eEEEEE--CCEEEEEcCcCCCcccceEEEEcCC
Confidence 122222 56777777654 345666654
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=97.68 E-value=0.0027 Score=67.26 Aligned_cols=174 Identities=14% Similarity=0.152 Sum_probs=101.5
Q ss_pred CCCcEEEEeCCCC--cee-eeecC-----CCCCeEEEEEec--CCC-EEEEEEC---CCcEEEEECCCC--ee--EEEec
Q 005096 206 DGGAIKYWQNNMN--NVK-ANKSA-----HKESVRDLSFCR--TDL-KFCSCSD---DTTVKVWDFARC--QE--ERSLT 267 (715)
Q Consensus 206 ~dg~I~iwd~~~~--~~~-~~~~~-----h~~~I~~l~~sp--d~~-~Las~s~---Dg~V~iwdl~~~--~~--~~~l~ 267 (715)
.+|.|.++|.++. +.. ..+.+ ..-....|.+.. ++. +|+++.. +.+|.+|+++.. .. +..+.
T Consensus 81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~ 160 (355)
T 3sre_A 81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIR 160 (355)
T ss_dssp -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEEC
T ss_pred CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccc
Confidence 6899999998742 211 11121 223566777765 343 4555533 467888877542 21 22333
Q ss_pred cc-CCceEEEEEcCCCCEEEEEeC-----------------CCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEE
Q 005096 268 GH-GWDVKSVDWHPTKSLLVSGGK-----------------DSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLT 329 (715)
Q Consensus 268 ~~-~~~I~si~~spdg~~L~sgs~-----------------Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Las 329 (715)
+. -...+++++.++|.++++... .|.|+.||. ++ +..+...-..-+.|+|++|+++|++
T Consensus 161 g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~-~~~~~~~l~~pNGia~spDg~~lYv 237 (355)
T 3sre_A 161 HKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--ND-VRVVAEGFDFANGINISPDGKYVYI 237 (355)
T ss_dssp CTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TC-CEEEEEEESSEEEEEECTTSSEEEE
T ss_pred cCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC--Ce-EEEeecCCcccCcceECCCCCEEEE
Confidence 22 245789999999987776541 244555554 33 2233323345789999999998887
Q ss_pred EE-CCCeEEEEECCC-CeE--EEEeecCCCCeEEEEEccCCCCEEEEEeCC-CcEEEEE
Q 005096 330 AS-KDQIIKLYDIRA-MKE--LESFRGHRKDVTALAWHPFHEEYFVSGSLD-GSIFHWL 383 (715)
Q Consensus 330 gs-~dg~I~iwDl~t-~~~--~~~~~~h~~~V~~l~~sp~~~~~l~sgs~D-G~I~iwd 383 (715)
+. ..+.|+.||+.. ++. ...+ ........+++...++++++++..+ +.|..|+
T Consensus 238 adt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~lwva~~~~g~~v~~~~ 295 (355)
T 3sre_A 238 AELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLWVGCHPNGMRIFFYD 295 (355)
T ss_dssp EEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCEEEEEESCHHHHHSCC
T ss_pred EeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCcEEEEecCCceEEEEEC
Confidence 76 567999999863 322 2333 2345667888876336777766544 3444444
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.64 E-value=0.0032 Score=65.38 Aligned_cols=202 Identities=12% Similarity=0.124 Sum_probs=98.3
Q ss_pred eEEEEeCCCCceEEEE-eccCCCEEEEEEcCCCCEEEEEeC----CC-------cEEEEeCCCCceeeeecCCCC-CeEE
Q 005096 167 EFTLWNGQSFNFEMIL-QAHDHAIRSMVWSHNDNWMVSGDD----GG-------AIKYWQNNMNNVKANKSAHKE-SVRD 233 (715)
Q Consensus 167 ~I~Iwd~~~~~~~~~l-~~h~~~V~~l~~spdg~~L~tgs~----dg-------~I~iwd~~~~~~~~~~~~h~~-~I~~ 233 (715)
.+.+||..+.+....- ..........+...++++++.|+. ++ .+.+||..+.+-...-..... .-.+
T Consensus 25 ~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~ 104 (318)
T 2woz_A 25 AAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFG 104 (318)
T ss_dssp EEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCE
T ss_pred ceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccc
Confidence 3889998887654421 111112222233456778888873 12 167788776654332111111 1112
Q ss_pred EEEecCCCEEEEEECC-------CcEEEEECCCCeeEEE--ecccCCceEEEEEcCCCCEEEEEeC------CCcEEEEE
Q 005096 234 LSFCRTDLKFCSCSDD-------TTVKVWDFARCQEERS--LTGHGWDVKSVDWHPTKSLLVSGGK------DSLVKLWD 298 (715)
Q Consensus 234 l~~spd~~~Las~s~D-------g~V~iwdl~~~~~~~~--l~~~~~~I~si~~spdg~~L~sgs~------Dg~I~iwD 298 (715)
++.. +++.++.|+.+ ..+.+||+.+.+-... +........++. -++++++.|+. ...+.+||
T Consensus 105 ~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd 181 (318)
T 2woz_A 105 LGEV-DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS--HNGMIYCLGGKTDDKKCTNRVFIYN 181 (318)
T ss_dssp EEEE-TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE--ETTEEEEECCEESSSCBCCCEEEEE
T ss_pred eEEE-CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE--ECCEEEEEcCCCCCCCccceEEEEc
Confidence 2222 56667777653 3588889876543322 111111112222 25667777654 23589999
Q ss_pred CCCCceeEE--eccCCCceEEEEEcCCCCEEEEEECC-----CeEEEEECCCCeEE--EEeecCCCCeEEEEEccCCCCE
Q 005096 299 AKSGRELCS--FHGHKNMVLCVKWNQNGNWVLTASKD-----QIIKLYDIRAMKEL--ESFRGHRKDVTALAWHPFHEEY 369 (715)
Q Consensus 299 l~s~~~~~~--~~~~~~~I~sl~~spdg~~Lasgs~d-----g~I~iwDl~t~~~~--~~~~~h~~~V~~l~~sp~~~~~ 369 (715)
+.+.+-... +........++.+ ++++++.|+.+ ..|.+||+++.+-. ..+.........+.+ ++.+
T Consensus 182 ~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~---~~~i 256 (318)
T 2woz_A 182 PKKGDWKDLAPMKTPRSMFGVAIH--KGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLVSL---AGSL 256 (318)
T ss_dssp TTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCEEEEE---TTEE
T ss_pred CCCCEEEECCCCCCCcccceEEEE--CCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccceEEEEE---CCEE
Confidence 987643222 1111111222332 56777777643 35778998765432 222211112222222 5677
Q ss_pred EEEEeCC
Q 005096 370 FVSGSLD 376 (715)
Q Consensus 370 l~sgs~D 376 (715)
++.|+.+
T Consensus 257 ~v~GG~~ 263 (318)
T 2woz_A 257 YAIGGFA 263 (318)
T ss_dssp EEECCBC
T ss_pred EEECCee
Confidence 7776643
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=97.58 E-value=0.04 Score=60.50 Aligned_cols=104 Identities=12% Similarity=0.203 Sum_probs=62.5
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEec--------cCCCEEEEEEcCC---CCEEEEEeC-------
Q 005096 145 CSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQA--------HDHAIRSMVWSHN---DNWMVSGDD------- 206 (715)
Q Consensus 145 ~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~--------h~~~V~~l~~spd---g~~L~tgs~------- 206 (715)
..-.+|+|.+||+++++-...+.|++++..+++....... ....+..|+|+++ +.+|+++..
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~ 106 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST 106 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence 4567999999998666654445799998665544332211 2456789999996 556654432
Q ss_pred ------CCcEEEEeCCCC--c---eeee---ec-CCCCCeEEEEEecCCCEEEEEEC
Q 005096 207 ------GGAIKYWQNNMN--N---VKAN---KS-AHKESVRDLSFCRTDLKFCSCSD 248 (715)
Q Consensus 207 ------dg~I~iwd~~~~--~---~~~~---~~-~h~~~I~~l~~spd~~~Las~s~ 248 (715)
...|.-|+++.. . .... +. ........|+|.+|+.++++.+.
T Consensus 107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 124555554321 1 1111 11 12234788999999987776553
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.53 E-value=0.0013 Score=69.66 Aligned_cols=233 Identities=10% Similarity=0.029 Sum_probs=112.3
Q ss_pred CCCEEEEEeC-CCeEEEEeCCC--CceEEE--Ee-ccCCCEEEEEEcCCCCEEEEEeC-C---------CcEEEEeCCCC
Q 005096 155 TGRRLITGSQ-SGEFTLWNGQS--FNFEMI--LQ-AHDHAIRSMVWSHNDNWMVSGDD-G---------GAIKYWQNNMN 218 (715)
Q Consensus 155 dg~~Latgs~-dg~I~Iwd~~~--~~~~~~--l~-~h~~~V~~l~~spdg~~L~tgs~-d---------g~I~iwd~~~~ 218 (715)
++++++.|+. ...+.+||..+ .+.... +. .......++.+ ++++++.|+. + ..+.+||..+.
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~ 96 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTN 96 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEETTTT
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeCCCC
Confidence 5666666654 34688999864 222221 11 11111222222 5666677765 2 46888998876
Q ss_pred ceeeeecCC-CCCeEEEEEecCCCEEEEEECC---------------------------------------CcEEEEECC
Q 005096 219 NVKANKSAH-KESVRDLSFCRTDLKFCSCSDD---------------------------------------TTVKVWDFA 258 (715)
Q Consensus 219 ~~~~~~~~h-~~~I~~l~~spd~~~Las~s~D---------------------------------------g~V~iwdl~ 258 (715)
+-....... .......+..-++++++.|+.+ ..|.+||+.
T Consensus 97 ~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~ 176 (357)
T 2uvk_A 97 SWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPS 176 (357)
T ss_dssp EEEECSCCCSSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETT
T ss_pred cEEECCCCCCcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEeCC
Confidence 543322211 1111222222467777777754 578999987
Q ss_pred CCeeEEE--ecccCCceEEEEEcCCCCEEEEEeC------CCcEEEEEC--CCCcee--EEeccCCCceEEEEEcCCCCE
Q 005096 259 RCQEERS--LTGHGWDVKSVDWHPTKSLLVSGGK------DSLVKLWDA--KSGREL--CSFHGHKNMVLCVKWNQNGNW 326 (715)
Q Consensus 259 ~~~~~~~--l~~~~~~I~si~~spdg~~L~sgs~------Dg~I~iwDl--~s~~~~--~~~~~~~~~I~sl~~spdg~~ 326 (715)
+.+-... +......-.+++.. ++++++.|+. ...+.+||+ ++.+-. ..+........+.+..-++++
T Consensus 177 ~~~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~i 255 (357)
T 2uvk_A 177 TQQWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGISNDSL 255 (357)
T ss_dssp TTEEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSCEEEEETTEE
T ss_pred CCcEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccceEEEECCEE
Confidence 7543322 22111111233333 4666666653 345777887 333211 111111111111112225666
Q ss_pred EEEEECC----------------------CeEEEEECCCC--eEEEEeecCCCCeEEEEEccCCCCEEEEEeCCC-----
Q 005096 327 VLTASKD----------------------QIIKLYDIRAM--KELESFRGHRKDVTALAWHPFHEEYFVSGSLDG----- 377 (715)
Q Consensus 327 Lasgs~d----------------------g~I~iwDl~t~--~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG----- 377 (715)
++.|+.+ ..+.+||+++. +.+..+......-.++.+ ++.+++.|+.++
T Consensus 256 yv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~---~~~i~v~GG~~~~~~~~ 332 (357)
T 2uvk_A 256 IFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSLPW---NNSLLIIGGETAGGKAV 332 (357)
T ss_dssp EEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBSSEEEEE---TTEEEEEEEECGGGCEE
T ss_pred EEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCcccceeEEe---CCEEEEEeeeCCCCCEe
Confidence 6666532 25778998754 344443332222233332 677888887543
Q ss_pred -cEEEEEcCCCCceEEE
Q 005096 378 -SIFHWLVGHETPQVEI 393 (715)
Q Consensus 378 -~I~iwd~~~~~~~~~~ 393 (715)
.|.++++++++.....
T Consensus 333 ~~v~~l~~~~~~~~~~~ 349 (357)
T 2uvk_A 333 TDSVLITVKDNKVTVQN 349 (357)
T ss_dssp EEEEEEEC-CCSCEEEC
T ss_pred eeEEEEEEcCcEeEeee
Confidence 3555677766654443
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=97.49 E-value=0.012 Score=61.02 Aligned_cols=215 Identities=7% Similarity=0.019 Sum_probs=115.1
Q ss_pred CCCCEEEEEe--CCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECC--------------CcEEEEECCC
Q 005096 196 HNDNWMVSGD--DGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDD--------------TTVKVWDFAR 259 (715)
Q Consensus 196 pdg~~L~tgs--~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~D--------------g~V~iwdl~~ 259 (715)
.++++|+... .++.|...+.+....... .. .. +--++.++++|+-+..+ ..|+..+++.
T Consensus 23 ~~g~~iy~~n~~d~~~ly~~~~dg~~~~~l-~~--~~--~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg 97 (302)
T 3s25_A 23 ESDGEVFFSNTNDNGRLYAMNIDGSNIHKL-SN--DT--AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNG 97 (302)
T ss_dssp EETTEEEEEEGGGTTEEEEEETTSCSCEEE-EE--EE--EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTS
T ss_pred EeCCEEEEEeCCCCceEEEEcCCCCCCEEc-cC--Cc--eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCC
Confidence 3566665543 245565555544432222 21 11 23456788887766543 3677777766
Q ss_pred CeeEEEecccCCceEEEEEcCCCCEEEEEe--C--CCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEEC-CC
Q 005096 260 CQEERSLTGHGWDVKSVDWHPTKSLLVSGG--K--DSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASK-DQ 334 (715)
Q Consensus 260 ~~~~~~l~~~~~~I~si~~spdg~~L~sgs--~--Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~-dg 334 (715)
.+...... .. +..|+++++.|+... . +..|+..+++... ...+..+.. ..|+++++.|+..+. +.
T Consensus 98 ~~~~~l~~-~~----~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~-~~~lt~~~~----~~~~~~g~~iy~t~~g~~ 167 (302)
T 3s25_A 98 HGSTVLDP-DP----CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEE-KKKIKNHYL----FTCNTSDRYFYYNNPKNG 167 (302)
T ss_dssp CCCEEEEC-SC----EEEEEEETTEEEEEEESSSSCEEEEEEETTSCC-CEEEESSCC----CCSEEETTEEEEECTTTC
T ss_pred CcceEeec-CC----ccEEEEeCCEEEEEeecCCCCceEEEEECCCCC-eEEEeCCCc----eEeeEECCEEEEEeCCCc
Confidence 54333222 11 235666788888776 2 3456666776433 334433322 456678888887765 57
Q ss_pred eEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeC-CC-cEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCE
Q 005096 335 IIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSL-DG-SIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYL 412 (715)
Q Consensus 335 ~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~-DG-~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 412 (715)
.|.+.++..+.....+. .... ..++| ++.+|+-... ++ .|..-+++... ...+. ...+. .|++++..
T Consensus 168 ~Iy~~~l~g~~~~~l~~---~~~~-~~~~P-~g~~iy~t~~~~~~~I~~~~ldG~~--~~~Lt--~~~~~--~~~~~g~~ 236 (302)
T 3s25_A 168 QLYRYDTASQSEALFYD---CNCY-KPVVL-DDTNVYYMDVNRDNAIVHVNINNPN--PVVLT--EANIE--HYNVYGSL 236 (302)
T ss_dssp CEEEEETTTTEEEEEEC---SCEE-EEEEE-ETTEEEEEEGGGTTEEEEECSSSCC--CEECS--CSCEE--EEEEETTE
T ss_pred eEEEEECCCCCEEEEeC---CCcc-ceeee-cCCEEEEEEcCCCcEEEEEECCCCC--eEEEe--CCCcc--eEEECCCE
Confidence 88888987665444333 2222 34557 4445444443 32 45444554433 23332 23343 36777888
Q ss_pred EEEEECCCeEEEEecCCCCCcccc
Q 005096 413 LCSGSNDHTTKFWCRNRPGDTARD 436 (715)
Q Consensus 413 L~sgs~Dg~I~iWdl~~~~~~~~~ 436 (715)
|+.++..+.-.|+.++.++...+.
T Consensus 237 Iy~~~~~~~~~i~~~~~DG~~r~~ 260 (302)
T 3s25_A 237 IFYQRGGDNPALCVVKNDGTGFKE 260 (302)
T ss_dssp EEEEECSSSCEEEEEETTSCCCEE
T ss_pred EEEEECCCCcEEEEEECCCCccEE
Confidence 876644333456666665654433
|
| >3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.48 E-value=0.12 Score=55.42 Aligned_cols=268 Identities=12% Similarity=0.114 Sum_probs=140.1
Q ss_pred CCEEEEEeCCCeEEEEeCCC--------CceEEE---Eec-cCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC-----
Q 005096 156 GRRLITGSQSGEFTLWNGQS--------FNFEMI---LQA-HDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN----- 218 (715)
Q Consensus 156 g~~Latgs~dg~I~Iwd~~~--------~~~~~~---l~~-h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~----- 218 (715)
.+.++.-..||+|+.|=... ...... +.. ....|..|+. .....+.-..||.|..|-.+..
T Consensus 10 ~~~~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~i~~i~~--G~~~~~~l~~~G~v~~wG~n~~GqLG~ 87 (389)
T 3kci_A 10 GRENLYFQGSGTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIG--GEQTLFAVTADGKLYATGYGAGGRLGI 87 (389)
T ss_dssp -----------CEEEEEECTTSTTSSCSCSEEEEEEECHHHHHTCEEEEEE--ETTEEEEEETTSCEEEEECCGGGTTSS
T ss_pred cccceeECCCCeEEEeeCCCCccCCCCcCccccCCEecccccCCceEEEEe--CCCeEEEEcCCCcEEEEECCCCCCCCC
Confidence 34566667778888884222 111111 111 1224555543 3455556678899999954321
Q ss_pred ---c---eeeeec-CCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCC-----------eeEEEecc-cCCceEEEEEc
Q 005096 219 ---N---VKANKS-AHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARC-----------QEERSLTG-HGWDVKSVDWH 279 (715)
Q Consensus 219 ---~---~~~~~~-~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~-----------~~~~~l~~-~~~~I~si~~s 279 (715)
+ ....+. .....+..++++....+.+..+.||.|+.|-.+.. .....+.. ....|..|+..
T Consensus 88 g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G 167 (389)
T 3kci_A 88 GGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAG 167 (389)
T ss_dssp SSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEEC
T ss_pred CCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeC
Confidence 0 111111 12334556677767778888889999999965321 11122222 12356677665
Q ss_pred CCCCEEEEEeCCCcEEEEECCCC-c----------eeEEecc-CCCceEEEEEcCCCCEEEEEECCCeEEEEECCCC---
Q 005096 280 PTKSLLVSGGKDSLVKLWDAKSG-R----------ELCSFHG-HKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAM--- 344 (715)
Q Consensus 280 pdg~~L~sgs~Dg~I~iwDl~s~-~----------~~~~~~~-~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~--- 344 (715)
....++...||.|+.|-.... + ....+.. ....|..|+......+.++...||.|+.|-....
T Consensus 168 --~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqL 245 (389)
T 3kci_A 168 --GAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKL 245 (389)
T ss_dssp --SSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTT
T ss_pred --cCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCC
Confidence 445566678899999965321 1 0111111 2335677766543456777778999999964321
Q ss_pred --------eEEEEeec-CCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCC--------ce---EEEeeccCCCEEEE
Q 005096 345 --------KELESFRG-HRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHET--------PQ---VEIHNVHDNTVWDL 404 (715)
Q Consensus 345 --------~~~~~~~~-h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~--------~~---~~~~~~h~~~V~~l 404 (715)
.....+.. ....|..|+. +....++-..||.|+.|-.+... .. ..+.......|..|
T Consensus 246 G~g~~~~~~~p~~v~~~~~~~v~~v~~---G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~i 322 (389)
T 3kci_A 246 GRGGSDGCKVPMKIDSLTGLGVVKVEC---GSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAI 322 (389)
T ss_dssp SSSSCCCEEEEEECGGGTTSCEEEEEE---ETTEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEE
T ss_pred CCCCCCCccccEEecccCCCcEEEEeC---CCCEEEEEeCCCeEEEEeCCCCCCCCCCCCccccCCeEeccCCCCCEEEE
Confidence 11112221 2234666665 45566666889999999664311 11 11111122356666
Q ss_pred EEcCCCCEEEEEECCCeEEEEecCCCCC
Q 005096 405 AWHPIGYLLCSGSNDHTTKFWCRNRPGD 432 (715)
Q Consensus 405 ~~spdg~~L~sgs~Dg~I~iWdl~~~~~ 432 (715)
+.. ....+....||.|+.|-.+..+.
T Consensus 323 a~G--~~h~~al~~~G~v~~wG~n~~Gq 348 (389)
T 3kci_A 323 ATG--SLHCVCCTEDGEVYTWGDNDEGQ 348 (389)
T ss_dssp EEC--SSEEEEEETTCCEEEEECCTTST
T ss_pred Eec--cCeEEEECCCCCEEEeeCCCCCc
Confidence 654 44566678899999998876554
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.47 E-value=0.004 Score=64.58 Aligned_cols=189 Identities=9% Similarity=0.027 Sum_probs=96.4
Q ss_pred EEcCCCCEEEEEeC-----C------CeEEEEeCCCCceEEEEeccCC--CEEEEEEcCCCCEEEEEeCC--------Cc
Q 005096 151 LWTPTGRRLITGSQ-----S------GEFTLWNGQSFNFEMILQAHDH--AIRSMVWSHNDNWMVSGDDG--------GA 209 (715)
Q Consensus 151 ~~spdg~~Latgs~-----d------g~I~Iwd~~~~~~~~~l~~h~~--~V~~l~~spdg~~L~tgs~d--------g~ 209 (715)
+..-++++++.|+. . ..+.+||..+.+....-..... ....+.+ ++++++.|+.+ ..
T Consensus 41 ~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~ 118 (315)
T 4asc_A 41 LVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDS 118 (315)
T ss_dssp EECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEESCEEEEE--TTEEEEECCEESSTTCCBCCC
T ss_pred EEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhceeEEEE--CCEEEEEeCCcCCCCCcccce
Confidence 33457778888873 1 2377888887654332111111 1112222 56666777632 45
Q ss_pred EEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEEC-C-----CcEEEEECCCCeeEEE--ecccCCceEEEEEcCC
Q 005096 210 IKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSD-D-----TTVKVWDFARCQEERS--LTGHGWDVKSVDWHPT 281 (715)
Q Consensus 210 I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~-D-----g~V~iwdl~~~~~~~~--l~~~~~~I~si~~spd 281 (715)
+.+||..+.+-...-..........+..-+++.++.|+. + ..+.+||+.+.+-... +........++.+ +
T Consensus 119 ~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~ 196 (315)
T 4asc_A 119 VMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH--D 196 (315)
T ss_dssp EEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--T
T ss_pred EEEECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEE--C
Confidence 888998876533222111111111122235666677665 2 4689999877543322 1111112223333 5
Q ss_pred CCEEEEEeCCC-----cEEEEECCCCceeEEe--ccCCCceEEEEEcCCCCEEEEEECC--------------CeEEEEE
Q 005096 282 KSLLVSGGKDS-----LVKLWDAKSGRELCSF--HGHKNMVLCVKWNQNGNWVLTASKD--------------QIIKLYD 340 (715)
Q Consensus 282 g~~L~sgs~Dg-----~I~iwDl~s~~~~~~~--~~~~~~I~sl~~spdg~~Lasgs~d--------------g~I~iwD 340 (715)
+++++.|+.++ .+.+||+++.+-...- ........++.+ ++++++.|+.+ ..|.+||
T Consensus 197 ~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd 274 (315)
T 4asc_A 197 GRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLVSL--VGTLYAIGGFATLETESGELVPTELNDIWRYN 274 (315)
T ss_dssp TEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEEEEEECTTSCEEEEEEEEEEEEE
T ss_pred CEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccceeEEEE--CCEEEEECCccccCcCCccccccccCcEEEec
Confidence 67777777654 4888999876433221 111112223333 56677777653 2366778
Q ss_pred CCCCe
Q 005096 341 IRAMK 345 (715)
Q Consensus 341 l~t~~ 345 (715)
+++.+
T Consensus 275 ~~~~~ 279 (315)
T 4asc_A 275 EEEKK 279 (315)
T ss_dssp TTTTE
T ss_pred CCCCh
Confidence 77654
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.44 E-value=0.0019 Score=67.86 Aligned_cols=189 Identities=11% Similarity=0.051 Sum_probs=109.5
Q ss_pred CEEEEEeCCCeEEEEeCCCCceEEEEeccC-CCEEEEEE---cCCCCEEEEE-eCCCcEEEEeCCCCceeeeecC----C
Q 005096 157 RRLITGSQSGEFTLWNGQSFNFEMILQAHD-HAIRSMVW---SHNDNWMVSG-DDGGAIKYWQNNMNNVKANKSA----H 227 (715)
Q Consensus 157 ~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~-~~V~~l~~---spdg~~L~tg-s~dg~I~iwd~~~~~~~~~~~~----h 227 (715)
.++++++.||.|+-+|.++++..-.+.... ..+....- ..++..++.. +.||.|..++.+++..+..+.. .
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~ 90 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS 90 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence 378999999999999999999988887641 12211110 0122333333 5899999999887754433321 1
Q ss_pred CCCeEE---EEE-----ecCCCEEEEEECCCcEEEEECCCCeeEEEecccCC-------ceEEEEEc-----CCCCEEEE
Q 005096 228 KESVRD---LSF-----CRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGW-------DVKSVDWH-----PTKSLLVS 287 (715)
Q Consensus 228 ~~~I~~---l~~-----spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~-------~I~si~~s-----pdg~~L~s 287 (715)
...+.. ..+ ...+..+++++.++++...|+.+++.+..+..... ...|.... -.+..|+.
T Consensus 91 ~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~i 170 (339)
T 2be1_A 91 TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIVI 170 (339)
T ss_dssp TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEEE
T ss_pred ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEEE
Confidence 111211 000 01456789999999999999999999988864321 01111111 12456777
Q ss_pred EeCCCcEEEEECCCCceeEEec-----cCCCc--e-EEEEEcCCCCEEEEEECCCeEEEEECCCCeEEE
Q 005096 288 GGKDSLVKLWDAKSGRELCSFH-----GHKNM--V-LCVKWNQNGNWVLTASKDQIIKLYDIRAMKELE 348 (715)
Q Consensus 288 gs~Dg~I~iwDl~s~~~~~~~~-----~~~~~--I-~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~ 348 (715)
+..+..|.+.+ ++++ +..++ ..... + .+-..+.|+.+ ++++.||.|..+|.++++.+.
T Consensus 171 g~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 171 GKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp EEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred ecceEEEEEEC-CCCC-eEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCcEEE
Confidence 77777777777 4453 22211 00000 0 00001224565 557889999999999998876
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.39 E-value=0.0035 Score=66.22 Aligned_cols=216 Identities=11% Similarity=-0.029 Sum_probs=100.2
Q ss_pred CCCEEEEEeC-CCcEEEEeCCC-CceeeeecCCC--CCe-EEEEEecCCCEEEEEEC-C---------CcEEEEECCCCe
Q 005096 197 NDNWMVSGDD-GGAIKYWQNNM-NNVKANKSAHK--ESV-RDLSFCRTDLKFCSCSD-D---------TTVKVWDFARCQ 261 (715)
Q Consensus 197 dg~~L~tgs~-dg~I~iwd~~~-~~~~~~~~~h~--~~I-~~l~~spd~~~Las~s~-D---------g~V~iwdl~~~~ 261 (715)
++++++.|+. ...+.+||..+ ......+.... ... .+++. -++++++.|+. + ..+.+||+.+.+
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~ 97 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAF-IDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNS 97 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEE-ETTEEEEECCEEECTTSCEEECCCEEEEETTTTE
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEE-ECCEEEEEcCCCCCCCccceeeccEEEEeCCCCc
Confidence 4555566553 34688888764 11122221111 111 12222 25666666654 2 468899987764
Q ss_pred eEEEe--c-ccCCceEEEEEcCCCCEEEEEeCC---------------------------------------CcEEEEEC
Q 005096 262 EERSL--T-GHGWDVKSVDWHPTKSLLVSGGKD---------------------------------------SLVKLWDA 299 (715)
Q Consensus 262 ~~~~l--~-~~~~~I~si~~spdg~~L~sgs~D---------------------------------------g~I~iwDl 299 (715)
-...- . .......++. -++++++.|+.+ ..+.+||+
T Consensus 98 W~~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~ 175 (357)
T 2uvk_A 98 WVKLMSHAPMGMAGHVTFV--HNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDP 175 (357)
T ss_dssp EEECSCCCSSCCSSEEEEE--ETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEET
T ss_pred EEECCCCCCcccccceEEE--ECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEeC
Confidence 33221 1 1111222233 357778888754 57889999
Q ss_pred CCCceeEE--eccCCCceEEEEEcCCCCEEEEEEC------CCeEEEEEC--CCCe--EEEEeecCCCCeE-EEEEccCC
Q 005096 300 KSGRELCS--FHGHKNMVLCVKWNQNGNWVLTASK------DQIIKLYDI--RAMK--ELESFRGHRKDVT-ALAWHPFH 366 (715)
Q Consensus 300 ~s~~~~~~--~~~~~~~I~sl~~spdg~~Lasgs~------dg~I~iwDl--~t~~--~~~~~~~h~~~V~-~l~~sp~~ 366 (715)
.+.+-... +......-.+++.. ++++++.|+. ...+.+||+ .+.+ .+..+........ +++.. +
T Consensus 176 ~~~~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~~~~~~--~ 252 (357)
T 2uvk_A 176 STQQWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGIS--N 252 (357)
T ss_dssp TTTEEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSCEEEEE--T
T ss_pred CCCcEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccceEEEE--C
Confidence 87643322 22111111223322 5566666553 345777887 3322 2222211111111 12222 5
Q ss_pred CCEEEEEeCC----------------------CcEEEEEcCCCCceEEEe-eccCCCEEEEEEcCCCCEEEEEECCC
Q 005096 367 EEYFVSGSLD----------------------GSIFHWLVGHETPQVEIH-NVHDNTVWDLAWHPIGYLLCSGSNDH 420 (715)
Q Consensus 367 ~~~l~sgs~D----------------------G~I~iwd~~~~~~~~~~~-~~h~~~V~~l~~spdg~~L~sgs~Dg 420 (715)
+.+++.|+.+ ..+.+||..+......-. ......-.++ .-++++++.|+.++
T Consensus 253 ~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~--~~~~~i~v~GG~~~ 327 (357)
T 2uvk_A 253 DSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSL--PWNNSLLIIGGETA 327 (357)
T ss_dssp TEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBSSEEE--EETTEEEEEEEECG
T ss_pred CEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCcccceeE--EeCCEEEEEeeeCC
Confidence 6777777632 247788887654332211 1111111222 23677888888653
|
| >3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=97.35 E-value=0.078 Score=56.67 Aligned_cols=261 Identities=10% Similarity=-0.025 Sum_probs=124.7
Q ss_pred CEEEEEeCCCeEEEEeCCC-CceEEEE--eccCCCEEEEEEcC-CCCEEEEEeCCC----cEEEEeCCCCceeeeecC--
Q 005096 157 RRLITGSQSGEFTLWNGQS-FNFEMIL--QAHDHAIRSMVWSH-NDNWMVSGDDGG----AIKYWQNNMNNVKANKSA-- 226 (715)
Q Consensus 157 ~~Latgs~dg~I~Iwd~~~-~~~~~~l--~~h~~~V~~l~~sp-dg~~L~tgs~dg----~I~iwd~~~~~~~~~~~~-- 226 (715)
..|++|+..| +.+++... ++.-..+ ......|.+|++.+ +...|+++...| .|...+ +.++....+..
T Consensus 23 g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~-D~G~tW~~~~~~~ 100 (394)
T 3b7f_A 23 VMLLVATIKG-AWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMAARTGHLGPTVFRSD-DGGGNWTEATRPP 100 (394)
T ss_dssp CEEEEEETTE-EEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEEEEC--CCEEEEEES-STTSCCEECSBCC
T ss_pred CEEEEEecCc-eEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEEecCCCCCccEEEeC-CCCCCceECCccc
Confidence 4677888877 55554332 2211111 12346799999998 333444444444 343332 22221111110
Q ss_pred ------------CCCCeEEEEEec-C-CCEEEEEECCCcEEEEECCCCeeEEEecc-------------------cCCce
Q 005096 227 ------------HKESVRDLSFCR-T-DLKFCSCSDDTTVKVWDFARCQEERSLTG-------------------HGWDV 273 (715)
Q Consensus 227 ------------h~~~I~~l~~sp-d-~~~Las~s~Dg~V~iwdl~~~~~~~~l~~-------------------~~~~I 273 (715)
....|.+|++.+ + ...|++++..+.|...+- .++.-..+.. ....|
T Consensus 101 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~D-gG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i 179 (394)
T 3b7f_A 101 AFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRSTD-HGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKM 179 (394)
T ss_dssp CCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEESS-TTSBCEECHHHHTCTTHHHHHCCC----CCCCEE
T ss_pred cCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEEcC-CCCCeEECcCccCCccccccccccccCCCCCCce
Confidence 112577888876 2 455666665665555432 2222122210 12357
Q ss_pred EEEEEcCC-CCEEEEEeCCCcEEEEECCCCceeEEeccC-------------CCceEEEEEcCC-CCEEEEEECCCeEEE
Q 005096 274 KSVDWHPT-KSLLVSGGKDSLVKLWDAKSGRELCSFHGH-------------KNMVLCVKWNQN-GNWVLTASKDQIIKL 338 (715)
Q Consensus 274 ~si~~spd-g~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~-------------~~~I~sl~~spd-g~~Lasgs~dg~I~i 338 (715)
.+|.+++. .+.|+++..++.|...+ +.++.-..+... ...+.+|.++++ ...|++++..+ |..
T Consensus 180 ~~i~~d~~~~~~l~vg~~~ggl~~s~-DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l~~ 257 (394)
T 3b7f_A 180 HSILVDPRDPKHLYIGMSSGGVFEST-DAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-IYR 257 (394)
T ss_dssp EEEEECTTCTTCEEEEEETBEEEEES-STTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-EEE
T ss_pred eEEEECCCCCCEEEEEECCCCEEEEC-CCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-EEE
Confidence 89999873 34455555445444432 223332222110 134889999885 46677776544 544
Q ss_pred EECCCCeEEEEeec--CC---CCeEEEEEccCCCCEEEEEeC-----------CCcEEEEEcCCCCceEEEe-eccC--C
Q 005096 339 YDIRAMKELESFRG--HR---KDVTALAWHPFHEEYFVSGSL-----------DGSIFHWLVGHETPQVEIH-NVHD--N 399 (715)
Q Consensus 339 wDl~t~~~~~~~~~--h~---~~V~~l~~sp~~~~~l~sgs~-----------DG~I~iwd~~~~~~~~~~~-~~h~--~ 399 (715)
.+- .++.-..+.. .. ..+.+|++++.+...|+++.. ++...||............ ..-. .
T Consensus 258 s~D-~G~tW~~~~~~l~~~~~~~~~~i~~~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~glp~~~ 336 (394)
T 3b7f_A 258 MDR-REGVWKRIGDAMPREVGDIGFPIVVHQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDRGLPTDQ 336 (394)
T ss_dssp EET-TTTEEECGGGGSCTTTCSCEEEEEECSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECBTSCCSS
T ss_pred eCC-CCCcceECCCCCCCCCccceEEEEECCCCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCCCCCCcc
Confidence 442 2332222221 11 345678887655454544432 3334566554433322222 1111 0
Q ss_pred -----CEEEEEEcCC-CCEEEEEECCCeEE
Q 005096 400 -----TVWDLAWHPI-GYLLCSGSNDHTTK 423 (715)
Q Consensus 400 -----~V~~l~~spd-g~~L~sgs~Dg~I~ 423 (715)
....+++++. ...|+.++.++.|.
T Consensus 337 ~~~~~~~~~~~~~p~~~~~l~~g~~~g~l~ 366 (394)
T 3b7f_A 337 AWLTVKRQAMTADAHAPVGVYFGTTGGEIW 366 (394)
T ss_dssp CCCCCCTBSEEECCSSSCCEEEECTTSCEE
T ss_pred ccceEEEEEEEECCCCCCEEEEEeCCCeEE
Confidence 1135777764 34466666565543
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.25 E-value=0.0087 Score=62.05 Aligned_cols=189 Identities=10% Similarity=0.066 Sum_probs=93.6
Q ss_pred EcCCCCEEEEEeC----CC-------eEEEEeCCCCceEEEEecc--CCCEEEEEEcCCCCEEEEEeCC-------CcEE
Q 005096 152 WTPTGRRLITGSQ----SG-------EFTLWNGQSFNFEMILQAH--DHAIRSMVWSHNDNWMVSGDDG-------GAIK 211 (715)
Q Consensus 152 ~spdg~~Latgs~----dg-------~I~Iwd~~~~~~~~~l~~h--~~~V~~l~~spdg~~L~tgs~d-------g~I~ 211 (715)
...++++++.|+. ++ .+.+||..+.+....-... ......+.+ ++++++.|+.+ ..+.
T Consensus 53 ~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~ 130 (318)
T 2woz_A 53 VTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEV--DDKIYVVAGKDLQTEASLDSVL 130 (318)
T ss_dssp ECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEEEE
T ss_pred EEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccceEEE--CCEEEEEcCccCCCCcccceEE
Confidence 3456777778873 12 2778888776544321111 111122222 56677777654 3477
Q ss_pred EEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEEC------CCcEEEEECCCCeeEEE--ecccCCceEEEEEcCCCC
Q 005096 212 YWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSD------DTTVKVWDFARCQEERS--LTGHGWDVKSVDWHPTKS 283 (715)
Q Consensus 212 iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~------Dg~V~iwdl~~~~~~~~--l~~~~~~I~si~~spdg~ 283 (715)
+||..+.+-...-..........+..-++++++.|+. ...+.+||+.+.+-... +........++.+ +++
T Consensus 131 ~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~ 208 (318)
T 2woz_A 131 CYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIH--KGK 208 (318)
T ss_dssp EEETTTTEEEEECCCSSCEESCEEEEETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTE
T ss_pred EEeCCCCCEeECCCCCCcccccEEEEECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEEE--CCE
Confidence 8888776543321111111111112235666666653 24589999977643322 1111112223333 467
Q ss_pred EEEEEeCC-----CcEEEEECCCCceeEE--eccCCCceEEEEEcCCCCEEEEEECC--------------CeEEEEECC
Q 005096 284 LLVSGGKD-----SLVKLWDAKSGRELCS--FHGHKNMVLCVKWNQNGNWVLTASKD--------------QIIKLYDIR 342 (715)
Q Consensus 284 ~L~sgs~D-----g~I~iwDl~s~~~~~~--~~~~~~~I~sl~~spdg~~Lasgs~d--------------g~I~iwDl~ 342 (715)
+++.|+.+ ..+.+||+++.+-... +........++.+ ++++++.|+.+ ..|.+||++
T Consensus 209 iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~ 286 (318)
T 2woz_A 209 IVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLVSL--AGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDD 286 (318)
T ss_dssp EEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCEEEEE--TTEEEEECCBCCBC----CCBCCBCCCEEEEETT
T ss_pred EEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccceEEEEE--CCEEEEECCeeccCCCCceeccceeeeEEEEeCC
Confidence 77777643 3477899887643221 1111111222222 45666666543 356777777
Q ss_pred CCeE
Q 005096 343 AMKE 346 (715)
Q Consensus 343 t~~~ 346 (715)
+.+-
T Consensus 287 ~~~W 290 (318)
T 2woz_A 287 KKEW 290 (318)
T ss_dssp TTEE
T ss_pred CCEe
Confidence 6543
|
| >3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B | Back alignment and structure |
|---|
Probab=97.24 E-value=0.018 Score=58.89 Aligned_cols=226 Identities=12% Similarity=0.048 Sum_probs=121.8
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEe
Q 005096 187 HAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSL 266 (715)
Q Consensus 187 ~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l 266 (715)
..|..|+.... ..++. . ||.|+.|-.+....+..-......|..|+...+. .++. . ||.|+.|-.+....+-.-
T Consensus 24 ~~i~~ia~G~~-h~~~l-~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~h-s~~l-~-~G~v~~wG~n~~Gqlg~P 97 (282)
T 3qhy_B 24 SGVDAIAGGYF-HGLAL-K-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYH-SLAL-K-DGEVIAWGGNEDGQTTVP 97 (282)
T ss_dssp SSCCEEEECSS-EEEEE-E-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSE-EEEE-E-TTEEEEEECCTTSTTCCC
T ss_pred CCCcEEEeCCC-eEEEE-E-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCE-EEEE-E-CCEEEEeeCCCCCCCCCC
Confidence 35666665432 22333 4 8999999755432211111223467777665332 2333 5 899999987543222111
Q ss_pred cccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeE
Q 005096 267 TGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKE 346 (715)
Q Consensus 267 ~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~ 346 (715)
......|..|+...+ ..++.. ||.|+.|-......+-.-......|..|+...+ ..++-. ||.|+.|-......
T Consensus 98 ~~~~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~--~~~~l~-~G~v~~wG~n~~gq 171 (282)
T 3qhy_B 98 AEARSGVDAIAAGAW--ASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVY--TALAVK-NGGVIAWGDNYFGQ 171 (282)
T ss_dssp GGGSSSEEEEEEETT--EEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSS--EEEEEE-TTEEEEEECCTTST
T ss_pred cccCCCeEEEECcCC--EEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccC--EEEEEE-CCEEEEecCCCCCC
Confidence 112346888877643 333344 899999976542222111122345777765433 333334 79999997654322
Q ss_pred EEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEe
Q 005096 347 LESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWC 426 (715)
Q Consensus 347 ~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWd 426 (715)
+..-......|..|+.. ....+.- .||.|+.|-.+....+-. .......|..|+...+. .++. . ||.|+.|-
T Consensus 172 lg~p~~~~~~v~~i~~G---~~hs~al-~~G~v~~wG~n~~gqlg~-p~~~~~~v~~i~~G~~h-~~al-~-~g~v~~wG 243 (282)
T 3qhy_B 172 TTVPAEAQSGVDDVAGG---IFHSLAL-KDGKVIAWGDNRYKQTTV-PTEALSGVSAIASGEWY-SLAL-K-NGKVIAWG 243 (282)
T ss_dssp TSCCGGGGSSEEEEEEC---SSEEEEE-ETTEEEEEECCTTSTTCC-CGGGGSSCCEEEECSSC-EEEE-E-TTEEEEES
T ss_pred CCCceecCCCeEEEEec---CCEEEEE-ECCeEEEEECCCCCCCCC-CcccCCCceEEEcCCCE-EEEE-E-CCEEEEec
Confidence 22111223567777764 3333333 599999997655433211 11123457777765433 3333 3 99999998
Q ss_pred cCCCCC
Q 005096 427 RNRPGD 432 (715)
Q Consensus 427 l~~~~~ 432 (715)
.+..+.
T Consensus 244 ~n~~gq 249 (282)
T 3qhy_B 244 SSRTAP 249 (282)
T ss_dssp TTCCCC
T ss_pred CCCCcc
Confidence 776544
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.24 E-value=0.0052 Score=64.61 Aligned_cols=146 Identities=7% Similarity=0.042 Sum_probs=87.0
Q ss_pred CEEEEEeCCCcEEEEeCCCCceeeeecCCC-CCeEEEEEe--cCCCEEEEE--ECCCcEEEEECCCCeeEEEeccc----
Q 005096 199 NWMVSGDDGGAIKYWQNNMNNVKANKSAHK-ESVRDLSFC--RTDLKFCSC--SDDTTVKVWDFARCQEERSLTGH---- 269 (715)
Q Consensus 199 ~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~-~~I~~l~~s--pd~~~Las~--s~Dg~V~iwdl~~~~~~~~l~~~---- 269 (715)
.++++++.||.|.-+|.++++.+..+.... ..+....-. ..+..++.+ +.||.|..+|.+++.....+...
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~ 90 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS 90 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence 578889999999999999998888775541 122211100 112234433 68999999999887555443311
Q ss_pred CCceEE---EEE-----cCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCC-------ceEEEEEc-----CCCCEEEE
Q 005096 270 GWDVKS---VDW-----HPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKN-------MVLCVKWN-----QNGNWVLT 329 (715)
Q Consensus 270 ~~~I~s---i~~-----spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~-------~I~sl~~s-----pdg~~Las 329 (715)
...+.. ..+ ..++..+++++.++.+...|+++|+.+.++..... ...|.... ..+..|+.
T Consensus 91 ~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~i 170 (339)
T 2be1_A 91 TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIVI 170 (339)
T ss_dssp TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEEE
T ss_pred ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEEE
Confidence 111111 001 01356788999999999999999999998863321 11122211 12456777
Q ss_pred EECCCeEEEEECCCCe
Q 005096 330 ASKDQIIKLYDIRAMK 345 (715)
Q Consensus 330 gs~dg~I~iwDl~t~~ 345 (715)
+..+..|.+.+ ++++
T Consensus 171 g~~~y~v~~~~-~sG~ 185 (339)
T 2be1_A 171 GKTIFELGIHS-YDGA 185 (339)
T ss_dssp EEEEEECEECC-TTSC
T ss_pred ecceEEEEEEC-CCCC
Confidence 77777777776 4453
|
| >3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B | Back alignment and structure |
|---|
Probab=97.18 E-value=0.01 Score=60.91 Aligned_cols=223 Identities=12% Similarity=0.060 Sum_probs=116.2
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeec
Q 005096 146 SINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKS 225 (715)
Q Consensus 146 ~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~ 225 (715)
.|..|+..... .+.-. ||+|+.|-......+-.-......|..|+...+ ..++. . ||.|..|-.+....+..-.
T Consensus 25 ~i~~ia~G~~h--~~~l~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~-hs~~l-~-~G~v~~wG~n~~Gqlg~P~ 98 (282)
T 3qhy_B 25 GVDAIAGGYFH--GLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNY-HSLAL-K-DGEVIAWGGNEDGQTTVPA 98 (282)
T ss_dssp SCCEEEECSSE--EEEEE-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSS-EEEEE-E-TTEEEEEECCTTSTTCCCG
T ss_pred CCcEEEeCCCe--EEEEE-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCC-EEEEE-E-CCEEEEeeCCCCCCCCCCc
Confidence 35555554332 22224 888999965432211111112335666666533 23333 4 8999999755432111111
Q ss_pred CCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCcee
Q 005096 226 AHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGREL 305 (715)
Q Consensus 226 ~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~ 305 (715)
.....|..|+...+ +.+..+ ||.|+.|-.+....+-.-......|..|+...+. .++ -. ||.|+.|-......+
T Consensus 99 ~~~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~~-~~~-l~-~G~v~~wG~n~~gql 172 (282)
T 3qhy_B 99 EARSGVDAIAAGAW--ASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYT-ALA-VK-NGGVIAWGDNYFGQT 172 (282)
T ss_dssp GGSSSEEEEEEETT--EEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSE-EEE-EE-TTEEEEEECCTTSTT
T ss_pred ccCCCeEEEECcCC--EEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccCE-EEE-EE-CCEEEEecCCCCCCC
Confidence 12346777766543 444445 9999999875432222112233457777765332 222 33 799999976542222
Q ss_pred EEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcC
Q 005096 306 CSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVG 385 (715)
Q Consensus 306 ~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~ 385 (715)
..-......|..|+...+. .++. .||.|+.|-......+-.-......|..|+.. ....++-. ||.|+.|-.+
T Consensus 173 g~p~~~~~~v~~i~~G~~h-s~al--~~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G---~~h~~al~-~g~v~~wG~n 245 (282)
T 3qhy_B 173 TVPAEAQSGVDDVAGGIFH-SLAL--KDGKVIAWGDNRYKQTTVPTEALSGVSAIASG---EWYSLALK-NGKVIAWGSS 245 (282)
T ss_dssp SCCGGGGSSEEEEEECSSE-EEEE--ETTEEEEEECCTTSTTCCCGGGGSSCCEEEEC---SSCEEEEE-TTEEEEESTT
T ss_pred CCceecCCCeEEEEecCCE-EEEE--ECCeEEEEECCCCCCCCCCcccCCCceEEEcC---CCEEEEEE-CCEEEEecCC
Confidence 1111123457777665332 2333 59999999765432221111123457777764 33333334 9999999765
Q ss_pred CC
Q 005096 386 HE 387 (715)
Q Consensus 386 ~~ 387 (715)
..
T Consensus 246 ~~ 247 (282)
T 3qhy_B 246 RT 247 (282)
T ss_dssp CC
T ss_pred CC
Confidence 54
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=97.17 E-value=0.036 Score=59.35 Aligned_cols=145 Identities=12% Similarity=0.121 Sum_probs=97.2
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCceeEEeccC----CCceEEEEEcCCCCEEEEEECCCeEEEEECCCCe---------
Q 005096 279 HPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGH----KNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMK--------- 345 (715)
Q Consensus 279 spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~----~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~--------- 345 (715)
..++..|+++- ++.||.-++.....-+.++.. -..|..+..+++|++||..+ +..|.|..+-.+.
T Consensus 29 ~~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~ 106 (452)
T 3pbp_A 29 SQNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQ 106 (452)
T ss_dssp ETTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHH
T ss_pred EcCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccc
Confidence 33455555543 477888887754444444422 23688899999999999886 5688888886321
Q ss_pred ---EEEEeec------CCCCeEEEEEccCC--CCEEEEEeCCCcEEEEEcCCCCceEEEe---------eccCCCEEEEE
Q 005096 346 ---ELESFRG------HRKDVTALAWHPFH--EEYFVSGSLDGSIFHWLVGHETPQVEIH---------NVHDNTVWDLA 405 (715)
Q Consensus 346 ---~~~~~~~------h~~~V~~l~~sp~~--~~~l~sgs~DG~I~iwd~~~~~~~~~~~---------~~h~~~V~~l~ 405 (715)
..+.+.. ....|..+.|+|.+ +..|++-..|+.|++||+......-..+ ......|.+++
T Consensus 107 ~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~ 186 (452)
T 3pbp_A 107 DAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLE 186 (452)
T ss_dssp HTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEE
T ss_pred cccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEE
Confidence 1223332 24679999999964 4589999999999999997632211111 11225789999
Q ss_pred EcCCCCEEEEEE--CCCeEEEE
Q 005096 406 WHPIGYLLCSGS--NDHTTKFW 425 (715)
Q Consensus 406 ~spdg~~L~sgs--~Dg~I~iW 425 (715)
|..++-.|+..+ .+|.|+-.
T Consensus 187 Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 187 FSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp ECTTSSCEEEEECTTSCEEEEE
T ss_pred EcCCCcEEEEEecCCCCCEEEE
Confidence 999987777766 77887654
|
| >1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1 | Back alignment and structure |
|---|
Probab=97.12 E-value=0.22 Score=51.62 Aligned_cols=187 Identities=8% Similarity=0.074 Sum_probs=113.5
Q ss_pred CCCCEEEEEeCCCeEEEEeCCCCce-------EEEEe-ccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCC---C----
Q 005096 154 PTGRRLITGSQSGEFTLWNGQSFNF-------EMILQ-AHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNM---N---- 218 (715)
Q Consensus 154 pdg~~Latgs~dg~I~Iwd~~~~~~-------~~~l~-~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~---~---- 218 (715)
++..++++.+.+|.|+--.+.+.+. ...+. ...+.+..+......+.++..+..|.++-+.... .
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~~ 85 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRAS 85 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC-----
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCccC
Confidence 4566789999999999886554322 11111 1234455555555566777778888877765431 1
Q ss_pred --ce---eeeecCCCCCeEEEEEec---CCCEEEEEECCCcEEEEECCCC-------eeEEEecccCCceEEEEEcCCCC
Q 005096 219 --NV---KANKSAHKESVRDLSFCR---TDLKFCSCSDDTTVKVWDFARC-------QEERSLTGHGWDVKSVDWHPTKS 283 (715)
Q Consensus 219 --~~---~~~~~~h~~~I~~l~~sp---d~~~Las~s~Dg~V~iwdl~~~-------~~~~~l~~~~~~I~si~~spdg~ 283 (715)
.. ...+ ...+.|.++.... ++.+|+..+.+|.++...+... .....+.. .+.+..+....++.
T Consensus 86 ~G~~i~~~l~l-~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~-~d~lv~~~~~~~~~ 163 (312)
T 1suu_A 86 KGQNISELINL-GDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND-KDFVTSAEIVFKDE 163 (312)
T ss_dssp --CBGGGTSCC-CTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT-TCCEEEEEEECTTC
T ss_pred CCcChhhccCC-CCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC-CCEEEEEEEeCCCC
Confidence 10 0111 1234565554443 4678999999999999987432 22223333 45566655555566
Q ss_pred EEEEEeCCCcEEEEECCC---------CceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCC
Q 005096 284 LLVSGGKDSLVKLWDAKS---------GRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRA 343 (715)
Q Consensus 284 ~L~sgs~Dg~I~iwDl~s---------~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t 343 (715)
.|+..+.+|.+..+++.. |.....+. ....|.++....++..|++.+..|.++..++..
T Consensus 164 ~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~-~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e 231 (312)
T 1suu_A 164 KVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLK-EGDLFVKVLSVKENPYLLIVSENGYGKRLNMSK 231 (312)
T ss_dssp EEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCC-TTCCEEEEEECTTCSEEEEEETTSEEEEEEGGG
T ss_pred EEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeC-CCCEEEEEEEECCCCeEEEEECCCceEEEEHHH
Confidence 788888999998887643 11222233 244566666555667788899999999988753
|
| >1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1 | Back alignment and structure |
|---|
Probab=97.11 E-value=0.2 Score=51.88 Aligned_cols=229 Identities=10% Similarity=0.013 Sum_probs=132.8
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCcee--------eeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeE----
Q 005096 196 HNDNWMVSGDDGGAIKYWQNNMNNVK--------ANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEE---- 263 (715)
Q Consensus 196 pdg~~L~tgs~dg~I~iwd~~~~~~~--------~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~---- 263 (715)
++..++++.+.+|.|+-..+...... .......+.+..+..+.....++..+..|.++-+....-...
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~~ 85 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRAS 85 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC-----
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCccC
Confidence 45677888999999998765432111 111123456667777777788889999999887776321110
Q ss_pred --------EEecccCCceEEEEEcC---CCCEEEEEeCCCcEEEEECCC-------CceeEEeccCCCceEEEEEcCCCC
Q 005096 264 --------RSLTGHGWDVKSVDWHP---TKSLLVSGGKDSLVKLWDAKS-------GRELCSFHGHKNMVLCVKWNQNGN 325 (715)
Q Consensus 264 --------~~l~~~~~~I~si~~sp---dg~~L~sgs~Dg~I~iwDl~s-------~~~~~~~~~~~~~I~sl~~spdg~ 325 (715)
..+. ....|.++.... ++.+|+..+.+|.++...+.. |.....+.. .+.+..+....+..
T Consensus 86 ~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~-~d~lv~~~~~~~~~ 163 (312)
T 1suu_A 86 KGQNISELINLG-DQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND-KDFVTSAEIVFKDE 163 (312)
T ss_dssp --CBGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT-TCCEEEEEEECTTC
T ss_pred CCcChhhccCCC-CCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC-CCEEEEEEEeCCCC
Confidence 1122 223454443332 456788889999999987742 222333443 45566666655566
Q ss_pred EEEEEECCCeEEEEECCC---------CeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCC------ce
Q 005096 326 WVLTASKDQIIKLYDIRA---------MKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHET------PQ 390 (715)
Q Consensus 326 ~Lasgs~dg~I~iwDl~t---------~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~------~~ 390 (715)
.|+..+.+|.+..++... |.....+.. ...|.++.... ++..|++.+.+|.++..++..-. .=
T Consensus 164 ~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~-~d~vv~~~~v~-~~~~l~~vt~~G~~kr~~~~e~~~~~R~~kG 241 (312)
T 1suu_A 164 KVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKE-GDLFVKVLSVK-ENPYLLIVSENGYGKRLNMSKISELKRGATG 241 (312)
T ss_dssp EEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCT-TCCEEEEEECT-TCSEEEEEETTSEEEEEEGGGSCBCCTTCCC
T ss_pred EEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCC-CCEEEEEEEEC-CCCeEEEEECCCceEEEEHHHhcccCCCCCC
Confidence 788899999999888743 222233332 44566665554 45678888999999988874311 11
Q ss_pred EEEee---ccCCCEEEEEEcCCCCEEEEEECCCeEEEEecC
Q 005096 391 VEIHN---VHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRN 428 (715)
Q Consensus 391 ~~~~~---~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~ 428 (715)
..... .....+.++....+...|...+..|.+.-...+
T Consensus 242 v~~~~~~k~~~~~lv~~~~~~~~~~l~~~t~~g~~~r~~~~ 282 (312)
T 1suu_A 242 YTSYKKSDKKAGSVVDAIAVSEDDEILLVSKRSKALRTVAG 282 (312)
T ss_dssp EECSCTTCTTTCSEEEEEEECTTCEEEEEETTCEEEEEEGG
T ss_pred EEeeEccCCCCCeEEEEEEeCCCCEEEEEeCCCeEEEEEcc
Confidence 11111 122344443333344556666667765545543
|
| >3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=97.10 E-value=0.18 Score=52.53 Aligned_cols=227 Identities=11% Similarity=0.069 Sum_probs=130.8
Q ss_pred CCEEEEEeCCCeEEEEeCCCCce-------EEEEe-ccCCCEEEEEEcCCCCEEEEEeCCCcEEEEe---CCCC------
Q 005096 156 GRRLITGSQSGEFTLWNGQSFNF-------EMILQ-AHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQ---NNMN------ 218 (715)
Q Consensus 156 g~~Latgs~dg~I~Iwd~~~~~~-------~~~l~-~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd---~~~~------ 218 (715)
...+++.+.+|.|+--.+.+.+. ...+. .....+..+........|+.-+..|.++... +...
T Consensus 3 E~v~v~ls~~GyiKr~~~~~y~~~~rgg~g~~~~~~ke~D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G 82 (327)
T 3uc1_A 3 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARG 82 (327)
T ss_dssp CEEEEEEETTSEEEEEEHHHHHHHC--------CCCCGGGCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCC
T ss_pred ccEEEEEeCCCEEEEeeHHHhhhcccCCCCccccccCCCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCC
Confidence 34678888889888765332111 11111 1234455555555556666666677766554 3221
Q ss_pred ceeeee-c-CCCCCeEEEEEec---CCCEEEEEECCCcEEEEECCCCe-------eEEEecccCCceEEEEEcCCCCEEE
Q 005096 219 NVKANK-S-AHKESVRDLSFCR---TDLKFCSCSDDTTVKVWDFARCQ-------EERSLTGHGWDVKSVDWHPTKSLLV 286 (715)
Q Consensus 219 ~~~~~~-~-~h~~~I~~l~~sp---d~~~Las~s~Dg~V~iwdl~~~~-------~~~~l~~~~~~I~si~~spdg~~L~ 286 (715)
..+..+ . ...+.|..+.... ++.++++++.+|.|+...+.+.. ....+.. .+.+..+........|+
T Consensus 83 ~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~d~il 161 (327)
T 3uc1_A 83 QHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAGDDLL 161 (327)
T ss_dssp EEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTTCEEE
T ss_pred EEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEecCCCEEE
Confidence 111111 1 1345566655444 47899999999999999875422 2223333 34555555555566788
Q ss_pred EEeCCCcEEEEECC--C----Cc-----eeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCe-------EEE
Q 005096 287 SGGKDSLVKLWDAK--S----GR-----ELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMK-------ELE 348 (715)
Q Consensus 287 sgs~Dg~I~iwDl~--s----~~-----~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~-------~~~ 348 (715)
..+.+|.+..+... . ++ ....+. ....|.++....++.+|++.+..|.++.-.+.... -+.
T Consensus 162 l~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~ 240 (327)
T 3uc1_A 162 LVSANGQSIRFSATDEALRPMGRATSGVQGMRFN-IDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVL 240 (327)
T ss_dssp EEETTSEEEEEECCTTTSCCCCTTSBCEESSCCC-TTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEE
T ss_pred EEECCCeEEEEECcccccCcCCcCCCCeeeecCC-CCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEE
Confidence 88889998888766 2 11 112232 34557776666667789999999999988764322 122
Q ss_pred --EeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcC
Q 005096 349 --SFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVG 385 (715)
Q Consensus 349 --~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~ 385 (715)
.+......+..+.... ++..|+..+.+|.+..++..
T Consensus 241 ~~~l~~~~d~lv~~~~~~-~~~~i~l~T~~G~~ir~~~~ 278 (327)
T 3uc1_A 241 TVMYDRRRGRLVGALIVD-DDSELYAVTSGGGVIRTAAR 278 (327)
T ss_dssp SSCCCTTTCSEEEEEEEC-TTCEEEEEEGGGCEEEEEGG
T ss_pred EEEecCCCCeEEEEEEeC-CCccEEEEcCCCeEEEEehh
Confidence 2222234455555444 45566667778888777664
|
| >3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A | Back alignment and structure |
|---|
Probab=97.09 E-value=0.12 Score=57.14 Aligned_cols=225 Identities=10% Similarity=0.139 Sum_probs=133.6
Q ss_pred EEEEeCCCeEEEEeCCCCceEEEEecc-------------------------CCCEE--EEEEc---CCCCEEEEEe-CC
Q 005096 159 LITGSQSGEFTLWNGQSFNFEMILQAH-------------------------DHAIR--SMVWS---HNDNWMVSGD-DG 207 (715)
Q Consensus 159 Latgs~dg~I~Iwd~~~~~~~~~l~~h-------------------------~~~V~--~l~~s---pdg~~L~tgs-~d 207 (715)
+.+|+..|.|+|+-+-+.+.++.+... .+... .+.+. .||+||++-+ .+
T Consensus 73 f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdkan 152 (638)
T 3sbq_A 73 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDKAN 152 (638)
T ss_dssp EEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEETTT
T ss_pred EeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecCCC
Confidence 567888899999998888887775321 11112 23332 2578888776 45
Q ss_pred CcEEEEeCCCCceeeeecC-CCCCeEEEEEe--cCCCEEEEEEC-------CCcEE---------E---EECCCCeeEEE
Q 005096 208 GAIKYWQNNMNNVKANKSA-HKESVRDLSFC--RTDLKFCSCSD-------DTTVK---------V---WDFARCQEERS 265 (715)
Q Consensus 208 g~I~iwd~~~~~~~~~~~~-h~~~I~~l~~s--pd~~~Las~s~-------Dg~V~---------i---wdl~~~~~~~~ 265 (715)
..|...+++..++...+.. ....+.+++|- ++..++++++. ||... + .|.++.+....
T Consensus 153 ~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~iD~~tm~v~~Q 232 (638)
T 3sbq_A 153 SRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYNAIDAETMEMAFQ 232 (638)
T ss_dssp TEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEEEEETTTCSEEEE
T ss_pred cceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEEEEcCCccEEEEE
Confidence 7788889888876655543 45577888886 57788887765 33211 1 12222222111
Q ss_pred ecccCCceEEEEEcCCCCEEEEEeCCC---------------cEEEEECC-------CCc-------eeEEecc------
Q 005096 266 LTGHGWDVKSVDWHPTKSLLVSGGKDS---------------LVKLWDAK-------SGR-------ELCSFHG------ 310 (715)
Q Consensus 266 l~~~~~~I~si~~spdg~~L~sgs~Dg---------------~I~iwDl~-------s~~-------~~~~~~~------ 310 (715)
+. -.+....+..++++++.++.+.+. .|.++|++ .|+ -+..+.+
T Consensus 233 v~-v~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv~ViD~~~~~~~ 311 (638)
T 3sbq_A 233 VI-VDGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKTPVLDGRKKDGK 311 (638)
T ss_dssp EE-ESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSCBTTB
T ss_pred EE-cCCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCeeEEcccccccc
Confidence 11 112233445566777777766532 24555431 010 1112211
Q ss_pred ---------CCCceEEEEEcCCCCEEEEEE-CCCeEEEEECCCCeE-------------EEEeecCCCCeEEEEEccCCC
Q 005096 311 ---------HKNMVLCVKWNQNGNWVLTAS-KDQIIKLYDIRAMKE-------------LESFRGHRKDVTALAWHPFHE 367 (715)
Q Consensus 311 ---------~~~~I~sl~~spdg~~Lasgs-~dg~I~iwDl~t~~~-------------~~~~~~h~~~V~~l~~sp~~~ 367 (715)
-......+.++|||+++++++ .+.+|.|+|+++... +.... -.......+|.. ++
T Consensus 312 ~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~-~G 389 (638)
T 3sbq_A 312 DSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDG-RG 389 (638)
T ss_dssp CCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECS-SS
T ss_pred CCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECC-CC
Confidence 122345688999999998876 567999999875221 11222 344567889988 56
Q ss_pred CEEEEEeCCCcEEEEEcCC
Q 005096 368 EYFVSGSLDGSIFHWLVGH 386 (715)
Q Consensus 368 ~~l~sgs~DG~I~iwd~~~ 386 (715)
+...+.-.|..|..|++..
T Consensus 390 ~aYTtlfidSqvvkWni~~ 408 (638)
T 3sbq_A 390 NAYTTLFIDSQVVKWNMEE 408 (638)
T ss_dssp EEEEEETTTTEEEEEEHHH
T ss_pred ceEeeeeecceEEEEeccH
Confidence 6666777899999999864
|
| >2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A | Back alignment and structure |
|---|
Probab=96.96 E-value=0.35 Score=53.01 Aligned_cols=241 Identities=13% Similarity=0.091 Sum_probs=121.3
Q ss_pred CCEEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCc---eeeeec---------CCCCCeEEEEEecC---CCEEEEE-EC-
Q 005096 187 HAIRSMVWSHNDN-WMVSGDDGGAIKYWQNNMNN---VKANKS---------AHKESVRDLSFCRT---DLKFCSC-SD- 248 (715)
Q Consensus 187 ~~V~~l~~spdg~-~L~tgs~dg~I~iwd~~~~~---~~~~~~---------~h~~~I~~l~~spd---~~~Las~-s~- 248 (715)
..-..|+|.+|++ .|+++...|.|++++.+... .+..+. ........|+|+++ +.+|++. +.
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~ 93 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN 93 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence 4557899999986 55566788999999754321 111111 11356788999986 3333332 21
Q ss_pred -C----------CcEEEEECCC----------CeeEEEec--ccCCceEEEEEcCCCCEEEEEeCCC-------------
Q 005096 249 -D----------TTVKVWDFAR----------CQEERSLT--GHGWDVKSVDWHPTKSLLVSGGKDS------------- 292 (715)
Q Consensus 249 -D----------g~V~iwdl~~----------~~~~~~l~--~~~~~I~si~~spdg~~L~sgs~Dg------------- 292 (715)
+ ..|.-|.+.. .+.+..+. ........|+|.+||.++++.++.+
T Consensus 94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~~~~~~~~~~q~~~ 173 (463)
T 2wg3_C 94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGMITLDDMEEMDGLS 173 (463)
T ss_dssp CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTTCCHHHHHHCTTCC
T ss_pred CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCCCCCCccccccCcC
Confidence 1 1454566532 12222222 1223467899999998777766533
Q ss_pred ----cEEEEECCCC---------------------ceeEEeccCCCceEEEEEcCC-----CC-EEEEEECCC----eEE
Q 005096 293 ----LVKLWDAKSG---------------------RELCSFHGHKNMVLCVKWNQN-----GN-WVLTASKDQ----IIK 337 (715)
Q Consensus 293 ----~I~iwDl~s~---------------------~~~~~~~~~~~~I~sl~~spd-----g~-~Lasgs~dg----~I~ 337 (715)
.|.-.|.+.. ..+.. .++. ....++|++. |+ +++.+...| .-.
T Consensus 174 ~~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a-~G~R-Np~gla~dp~tg~~~G~l~~~~~D~~G~~~~~~e 251 (463)
T 2wg3_C 174 DFTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFA-HGLH-DPGRCAVDRHPTDININLTILCSDSNGKNRSSAR 251 (463)
T ss_dssp SCTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEE-ECCS-SCCBEEEESSCSSTTCSEEEEEECC------CEE
T ss_pred CCCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEE-ECCC-CcceEEECCCCCCcccceEEEecccCCCCCCCCe
Confidence 2333333321 01111 1222 2456889886 34 444433212 123
Q ss_pred EEECCCCe------EEEEeecCC-CCeEEEEEccC------CCCEEEEEeCCCcEEEEEcCCCCc--eEEEe-ec-----
Q 005096 338 LYDIRAMK------ELESFRGHR-KDVTALAWHPF------HEEYFVSGSLDGSIFHWLVGHETP--QVEIH-NV----- 396 (715)
Q Consensus 338 iwDl~t~~------~~~~~~~h~-~~V~~l~~sp~------~~~~l~sgs~DG~I~iwd~~~~~~--~~~~~-~~----- 396 (715)
|..+..+. .+..+..+. ..++.+.|-.. .+. ++++...+.|....++.... ....+ ..
T Consensus 252 i~~i~~G~~yG~~~P~~~~~~~~g~Ap~G~~~Y~G~~fP~~~g~-~f~~~~~g~i~~~~~~~~~~~~~~~~~~~g~~~~~ 330 (463)
T 2wg3_C 252 ILQIIKGKDYESEPSLLEFKPFSNGPLVGGFVYRGCQSERLYGS-YVFGDRNGNFLTLQQSPVTKQWQEKPLCLGTSGSC 330 (463)
T ss_dssp EEEEC----CCSCCCCEECCC----CEEEEEECCCSSCTTTTTC-EEEEETTSCEEEEEC-----CCEEEEECEEETTSS
T ss_pred EeeeccCCCCCCCCCeEEeeCCCCccccceEEEeCCCChhhcce-EEEecCCCcEEEEEeCCCCceeeEEEeecCCcccc
Confidence 33333222 233333221 46778877541 122 44455557776666544321 11122 11
Q ss_pred ---cCCCEEEEEEcCCCCEEEEEECC-----CeEEEEecCCC
Q 005096 397 ---HDNTVWDLAWHPIGYLLCSGSND-----HTTKFWCRNRP 430 (715)
Q Consensus 397 ---h~~~V~~l~~spdg~~L~sgs~D-----g~I~iWdl~~~ 430 (715)
....+.++.+.+||.++++.... ..=+||++...
T Consensus 331 ~~~~~~r~~~v~~~pdG~Lyv~~~~~~~~~~~~G~I~Ri~~p 372 (463)
T 2wg3_C 331 RGYFSGHILGFGEDELGEVYILSSSKSMTQTHNGKLYKIVDP 372 (463)
T ss_dssp CSCCCSEEEEEEECTTCCEEEEEESSCGGGCSSEEEEEEECT
T ss_pred cccccCcceEEEECCCCCEEEEeccCCcccCCCCcEEEecCc
Confidence 13578999999999888877521 23456777543
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=96.96 E-value=0.051 Score=58.25 Aligned_cols=144 Identities=14% Similarity=0.133 Sum_probs=94.8
Q ss_pred EEecCCCEEEEEECCCcEEEEECCCCeeEEEeccc----CCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCc-------
Q 005096 235 SFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGH----GWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGR------- 303 (715)
Q Consensus 235 ~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~----~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~------- 303 (715)
..+.++..|+++- ++.||.-++.....-+.+... -..|..+..+++|++|+..+. ..|.|..+-.+.
T Consensus 27 ~~~~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~ 104 (452)
T 3pbp_A 27 FSSQNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVS 104 (452)
T ss_dssp EEETTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHH
T ss_pred EEEcCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecC-CeEEEEEecCccccCcccc
Confidence 3445666666554 367887787644333344332 236888999999999998865 578888876321
Q ss_pred -----eeEEecc------CCCceEEEEEcC---CCCEEEEEECCCeEEEEECCCCe--EE--------EEeecCCCCeEE
Q 005096 304 -----ELCSFHG------HKNMVLCVKWNQ---NGNWVLTASKDQIIKLYDIRAMK--EL--------ESFRGHRKDVTA 359 (715)
Q Consensus 304 -----~~~~~~~------~~~~I~sl~~sp---dg~~Lasgs~dg~I~iwDl~t~~--~~--------~~~~~h~~~V~~ 359 (715)
..+.+.- ....|..+.|+| ++..|++-..|+.|++||+.... .. ..+......|.+
T Consensus 105 ~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S 184 (452)
T 3pbp_A 105 IQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITD 184 (452)
T ss_dssp HHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEE
T ss_pred cccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEE
Confidence 1122321 246799999999 45789999999999999998521 11 111223367899
Q ss_pred EEEccCCCCEEEEEe--CCCcEEE
Q 005096 360 LAWHPFHEEYFVSGS--LDGSIFH 381 (715)
Q Consensus 360 l~~sp~~~~~l~sgs--~DG~I~i 381 (715)
++|.. ++-.|...+ .+|.|+-
T Consensus 185 ~~Fg~-~~lTLYvl~~t~~GDIYA 207 (452)
T 3pbp_A 185 LEFSK-DGLTLYCLNTTEGGDIFA 207 (452)
T ss_dssp EEECT-TSSCEEEEECTTSCEEEE
T ss_pred EEEcC-CCcEEEEEecCCCCCEEE
Confidence 99998 565555544 7787764
|
| >3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=96.96 E-value=0.18 Score=53.69 Aligned_cols=257 Identities=10% Similarity=0.028 Sum_probs=121.2
Q ss_pred CccEEEEEEcC-CCCEEEEEeCCC----eEEEEeCCCCceEEEEec--------------cCCCEEEEEEcCC--CCEEE
Q 005096 144 RCSINRVLWTP-TGRRLITGSQSG----EFTLWNGQSFNFEMILQA--------------HDHAIRSMVWSHN--DNWMV 202 (715)
Q Consensus 144 ~~~I~~l~~sp-dg~~Latgs~dg----~I~Iwd~~~~~~~~~l~~--------------h~~~V~~l~~spd--g~~L~ 202 (715)
...|.+|++.+ +...|.+++..| .|...+ +.++.-..+.. ....|.+|++.+. .+.|+
T Consensus 54 ~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~-D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~ 132 (394)
T 3b7f_A 54 GHTIHHIVQDPREPERMLMAARTGHLGPTVFRSD-DGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWY 132 (394)
T ss_dssp TSEEEEEEECSSSTTCEEEEEEC--CCEEEEEES-STTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEE
T ss_pred CCceEEEEECCCCCCeEEEEecCCCCCccEEEeC-CCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEE
Confidence 35689999998 333455555444 454443 22221111110 1125778888862 45565
Q ss_pred EEeCCCcEEEEeCCCCceeeeec-------------------CCCCCeEEEEEecC-CCEEEEEECCCcEEEEECCCCee
Q 005096 203 SGDDGGAIKYWQNNMNNVKANKS-------------------AHKESVRDLSFCRT-DLKFCSCSDDTTVKVWDFARCQE 262 (715)
Q Consensus 203 tgs~dg~I~iwd~~~~~~~~~~~-------------------~h~~~I~~l~~spd-~~~Las~s~Dg~V~iwdl~~~~~ 262 (715)
++...+.|...+-. ++....+. .....|.+|.+.+. ...|+++..++.|...+- .++.
T Consensus 133 ~g~~~ggl~~S~Dg-G~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~D-gG~t 210 (394)
T 3b7f_A 133 AGTSPQGLFRSTDH-GASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFESTD-AGTD 210 (394)
T ss_dssp EEEETTEEEEESST-TSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEEEEESS-TTSS
T ss_pred EEecCCcEEEEcCC-CCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCEEEECC-CCCC
Confidence 55555555444322 22111111 11235788888873 345555554444444321 2222
Q ss_pred EEEecc-------------cCCceEEEEEcCC-CCEEEEEeCCCcEEEEECCCCceeEEecc--CC---CceEEEEEcC-
Q 005096 263 ERSLTG-------------HGWDVKSVDWHPT-KSLLVSGGKDSLVKLWDAKSGRELCSFHG--HK---NMVLCVKWNQ- 322 (715)
Q Consensus 263 ~~~l~~-------------~~~~I~si~~spd-g~~L~sgs~Dg~I~iwDl~s~~~~~~~~~--~~---~~I~sl~~sp- 322 (715)
-..+.. ....+.+|+++++ ...|+++...+ |...+- .++.-..+.. .. ..+.+|++++
T Consensus 211 W~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l~~s~D-~G~tW~~~~~~l~~~~~~~~~~i~~~p~ 288 (394)
T 3b7f_A 211 WKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-IYRMDR-REGVWKRIGDAMPREVGDIGFPIVVHQR 288 (394)
T ss_dssp CEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-EEEEET-TTTEEECGGGGSCTTTCSCEEEEEECSS
T ss_pred ceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-EEEeCC-CCCcceECCCCCCCCCccceEEEEECCC
Confidence 222211 0134889999986 35677676544 544442 2333322221 11 3456788876
Q ss_pred CCCEEEEEEC-----------CCeEEEEECCC-CeEEEEee-cCCC-------CeEEEEEccCCCCEEEEEeCCCcEEEE
Q 005096 323 NGNWVLTASK-----------DQIIKLYDIRA-MKELESFR-GHRK-------DVTALAWHPFHEEYFVSGSLDGSIFHW 382 (715)
Q Consensus 323 dg~~Lasgs~-----------dg~I~iwDl~t-~~~~~~~~-~h~~-------~V~~l~~sp~~~~~l~sgs~DG~I~iw 382 (715)
+...|+++.. ++...||...+ ++.-..+. +... ....+++++.+...|+.++.++.|.+-
T Consensus 289 ~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~glp~~~~~~~~~~~~~~~~p~~~~~l~~g~~~g~l~~S 368 (394)
T 3b7f_A 289 DPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDRGLPTDQAWLTVKRQAMTADAHAPVGVYFGTTGGEIWAS 368 (394)
T ss_dssp CTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECBTSCCSSCCCCCCTBSEEECCSSSCCEEEECTTSCEEEE
T ss_pred CCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCCCCCCccccceEEEEEEEECCCCCCEEEEEeCCCeEEEE
Confidence 3344555432 23345555443 22222221 1110 124578887555556666666665433
Q ss_pred EcCCCCceEEEeeccCCCEEEEEEc
Q 005096 383 LVGHETPQVEIHNVHDNTVWDLAWH 407 (715)
Q Consensus 383 d~~~~~~~~~~~~~h~~~V~~l~~s 407 (715)
............+--.|.++.|.
T Consensus 369 --~D~G~tW~~~~~~lp~~~~v~~~ 391 (394)
T 3b7f_A 369 --ADEGEHWQCIASHLPHIYAVQSA 391 (394)
T ss_dssp --SSTTSBCEEEECSCSCEEEEEEE
T ss_pred --CCCCCCceEcccCCCCeeEEEEe
Confidence 22222233333334457777664
|
| >1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.96 E-value=0.4 Score=49.50 Aligned_cols=227 Identities=11% Similarity=0.037 Sum_probs=126.0
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCceEEE---------EeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC---CC-----
Q 005096 155 TGRRLITGSQSGEFTLWNGQSFNFEMI---------LQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQN---NM----- 217 (715)
Q Consensus 155 dg~~Latgs~dg~I~Iwd~~~~~~~~~---------l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~---~~----- 217 (715)
+..++++.+.+|.|+--.+.+.+..+. ++. ++.+..+......+.|+..+..|.++-+.. ..
T Consensus 2 ~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke-~D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~a 80 (307)
T 1zi0_A 2 QEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKE-EDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGA 80 (307)
T ss_dssp CCEEEEEEETTSEEEEEECC---------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSSS
T ss_pred CCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCC-CCEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCCC
Confidence 455788999999998877665432211 222 234444444445566766777787666543 22
Q ss_pred -Cceee-ee-cCCCCCeEEEEEe---cCCCEEEEEECCCcEEEEECCCC-------eeEEEecccCCceEEEEEcCCCCE
Q 005096 218 -NNVKA-NK-SAHKESVRDLSFC---RTDLKFCSCSDDTTVKVWDFARC-------QEERSLTGHGWDVKSVDWHPTKSL 284 (715)
Q Consensus 218 -~~~~~-~~-~~h~~~I~~l~~s---pd~~~Las~s~Dg~V~iwdl~~~-------~~~~~l~~~~~~I~si~~spdg~~ 284 (715)
+..+. .+ -...+.|.++... .++.+|+.++.+|.++...+.+. .....+... +.+..+....+...
T Consensus 81 ~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~~~~~~~~~~ 159 (307)
T 1zi0_A 81 RGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-DELIGVDLTSGEDE 159 (307)
T ss_dssp CCEEGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-CCEEEEEEECTTCE
T ss_pred CCeEhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-CEEEEEEEeCCCCE
Confidence 11111 11 1234456665443 35668999999999999987422 122223333 45555555445567
Q ss_pred EEEEeCCCcEEEEECCC---------CceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCC---------eE
Q 005096 285 LVSGGKDSLVKLWDAKS---------GRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAM---------KE 346 (715)
Q Consensus 285 L~sgs~Dg~I~iwDl~s---------~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~---------~~ 346 (715)
|+..+.+|.+..++... |.....+. ....|.++....++..|++.+..|.++..++... ..
T Consensus 160 i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~kG~~ 238 (307)
T 1zi0_A 160 VMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLG-EGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVI 238 (307)
T ss_dssp EEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCCTTSCCEE
T ss_pred EEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeC-CCCEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCCCCCCCEE
Confidence 77888889888887532 11112232 3445666665555677888999999998877322 11
Q ss_pred EEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcC
Q 005096 347 LESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVG 385 (715)
Q Consensus 347 ~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~ 385 (715)
...+....+.+..+.... ++..|+..+.+|.+..+++.
T Consensus 239 ~~~~~~~~~~lv~~~~v~-~~~~l~~~t~~g~~ir~~~~ 276 (307)
T 1zi0_A 239 SIKVTERNGLVVGAVQVD-DCDQIMMITDAGTLVRTRVS 276 (307)
T ss_dssp SSCCCTTTCSEEEEEEEC-TTCEEEEEESSCCEEEEEGG
T ss_pred eeEecCCCCeEEEEEEeC-CCceEEEEcCCCcEEEEecc
Confidence 222332334454444433 34445566667776666653
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=96.91 E-value=0.054 Score=66.14 Aligned_cols=256 Identities=10% Similarity=0.092 Sum_probs=149.6
Q ss_pred CCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEE
Q 005096 165 SGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFC 244 (715)
Q Consensus 165 dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~La 244 (715)
+..|.|.|+.+...+.+.. -...+...+|..+.|+.-. ..++.|+|+++...+....- ...|.-=.|..+ +.|+
T Consensus 47 ~~~vvIidl~~~~~~~rrp---i~AdsAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~-~e~VvfWkWis~-~~l~ 120 (1630)
T 1xi4_A 47 QAQVVIIDMNDPSNPIRRP---ISADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISL-NTVA 120 (1630)
T ss_pred CceEEEEECCCCCCccccc---ccchhhccCCCcceEEEec-CCeEEEeehHHhhhhccccc-CCCceEEEecCC-CeeE
Confidence 3478899988765442211 1112344567777776554 68999999998876665543 345655566544 3444
Q ss_pred EEECCCcEEEEECCC-CeeEEEeccc----CCceEEEEEcCCCCEEEEEe-------CCCcEEEEECCCCceeEEeccCC
Q 005096 245 SCSDDTTVKVWDFAR-CQEERSLTGH----GWDVKSVDWHPTKSLLVSGG-------KDSLVKLWDAKSGRELCSFHGHK 312 (715)
Q Consensus 245 s~s~Dg~V~iwdl~~-~~~~~~l~~~----~~~I~si~~spdg~~L~sgs-------~Dg~I~iwDl~s~~~~~~~~~~~ 312 (715)
..+ +..|+.|++.. ...++.+..| ...|..-..+++.++++..+ -.|.+.+|..+.+ .-..+.+|.
T Consensus 121 lVT-~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~-~sQ~iegha 198 (1630)
T 1xi4_A 121 LVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHA 198 (1630)
T ss_pred EEc-CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc-cchhhhHhH
Confidence 444 44799999964 2333444433 45677888888888776544 3477889987743 334455565
Q ss_pred CceEEEEEcC---CCCEEEEEEC---CCeEEEEECCCC---eE------EEEee---cCCCCeEEEEEccCCCCEEEEEe
Q 005096 313 NMVLCVKWNQ---NGNWVLTASK---DQIIKLYDIRAM---KE------LESFR---GHRKDVTALAWHPFHEEYFVSGS 374 (715)
Q Consensus 313 ~~I~sl~~sp---dg~~Lasgs~---dg~I~iwDl~t~---~~------~~~~~---~h~~~V~~l~~sp~~~~~l~sgs 374 (715)
.....+.+.- ...+++.+.. .++++|.++... .. +..+- ....--.++..++ ...++...+
T Consensus 199 ~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~-k~g~iy~it 277 (1630)
T 1xi4_A 199 ASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISE-KHDVVFLIT 277 (1630)
T ss_pred hhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEecc-ccCEEEEEe
Confidence 5444444321 1123332222 368888888542 11 11111 1122345566666 566777888
Q ss_pred CCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCCC
Q 005096 375 LDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRP 430 (715)
Q Consensus 375 ~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~ 430 (715)
.-|.|.+||+.++..+..-.. ....|...+.+....-++.....|.|.--.+++.
T Consensus 278 k~G~~~~~d~~t~~~i~~~ri-s~~~iF~~~~~~~~~g~~~vnr~G~vl~v~v~~~ 332 (1630)
T 1xi4_A 278 KYGYIHLYDLETGTCIYMNRI-SGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEE 332 (1630)
T ss_pred cCceEEEEecccchhhhhccc-cCCceEEeccCCCCCceEEEcCCceEEEEEEccc
Confidence 999999999999876654332 3445554444444333555556777666666543
|
| >3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=96.90 E-value=0.14 Score=53.44 Aligned_cols=199 Identities=8% Similarity=0.030 Sum_probs=119.7
Q ss_pred CCccEEEEEEcCCCCEEEEEeCCCeEEEEe---CCCC------ceEEE-Ee-ccCCCEEEEEEcC---CCCEEEEEeCCC
Q 005096 143 NRCSINRVLWTPTGRRLITGSQSGEFTLWN---GQSF------NFEMI-LQ-AHDHAIRSMVWSH---NDNWMVSGDDGG 208 (715)
Q Consensus 143 H~~~I~~l~~spdg~~Latgs~dg~I~Iwd---~~~~------~~~~~-l~-~h~~~V~~l~~sp---dg~~L~tgs~dg 208 (715)
..+.+..+........|+.-+..|.++... +... ..+.. +. .....|.++.... ++.++++.+.+|
T Consensus 40 e~D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G 119 (327)
T 3uc1_A 40 QDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARGQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNG 119 (327)
T ss_dssp GGGCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCCEEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTS
T ss_pred CCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCCEEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCC
Confidence 344566666666666788788888766554 3322 11111 11 1234555554433 478999999999
Q ss_pred cEEEEeCCCCc-------eeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECC--CCee---------EEEecccC
Q 005096 209 AIKYWQNNMNN-------VKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFA--RCQE---------ERSLTGHG 270 (715)
Q Consensus 209 ~I~iwd~~~~~-------~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~--~~~~---------~~~l~~~~ 270 (715)
.|+...+.... ....+. ..+.+..+........|+..+.+|.+..+... .-.. ...+. ..
T Consensus 120 ~iKr~~l~~~~~~~r~G~~~i~lk-e~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~-~~ 197 (327)
T 3uc1_A 120 LVKKSKLTDFDSNRSGGIVAVNLR-DNDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFN-ID 197 (327)
T ss_dssp EEEEEEGGGGCCCCSSCEESCBCC-TTCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTSBCEESSCCC-TT
T ss_pred EEEEeEHHHhhccccCceEEEEEC-CCCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCCCCeeeecCC-CC
Confidence 99998765421 111222 24566666666677789999999999888876 3211 11222 34
Q ss_pred CceEEEEEcCCCCEEEEEeCCCcEEEEECCCC-------ceeEE--eccCCCceEEEEEcCCCCEEEEEECCCeEEEEEC
Q 005096 271 WDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSG-------RELCS--FHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDI 341 (715)
Q Consensus 271 ~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~-------~~~~~--~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl 341 (715)
..|.++....++..|++.+..|.++.-.+..- +-+.. +......+..+....+...|+..+.+|.+..++.
T Consensus 198 d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~ 277 (327)
T 3uc1_A 198 DRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAA 277 (327)
T ss_dssp CCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEEGGGCEEEEEG
T ss_pred CEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeEEEEEEeCCCccEEEEcCCCeEEEEeh
Confidence 55777766666778999999999998875421 22222 2222344555544445556777777888777776
Q ss_pred CC
Q 005096 342 RA 343 (715)
Q Consensus 342 ~t 343 (715)
..
T Consensus 278 ~~ 279 (327)
T 3uc1_A 278 RQ 279 (327)
T ss_dssp GG
T ss_pred hh
Confidence 43
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=96.73 E-value=0.048 Score=63.27 Aligned_cols=194 Identities=8% Similarity=0.031 Sum_probs=105.6
Q ss_pred CCCCEEEEEeCC----CeEEEEeCCCCceEEEE-e------cc-CCCEEEEEEcCCCCEEEEEeCC------CcEEEEeC
Q 005096 154 PTGRRLITGSQS----GEFTLWNGQSFNFEMIL-Q------AH-DHAIRSMVWSHNDNWMVSGDDG------GAIKYWQN 215 (715)
Q Consensus 154 pdg~~Latgs~d----g~I~Iwd~~~~~~~~~l-~------~h-~~~V~~l~~spdg~~L~tgs~d------g~I~iwd~ 215 (715)
-++.+++.|+.+ ..+.+||..+.+....- . .. .....++.+..++++++.|+.+ ..+.+||.
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence 466777777753 46889998876655443 1 11 1122233332266777777654 35788888
Q ss_pred CCCceeeeecCCCCCe-EEEEEecCCCEEEEEECCC--cEEEEECCCCeeEEEec-----ccCCceEEEEEcCC-CCEEE
Q 005096 216 NMNNVKANKSAHKESV-RDLSFCRTDLKFCSCSDDT--TVKVWDFARCQEERSLT-----GHGWDVKSVDWHPT-KSLLV 286 (715)
Q Consensus 216 ~~~~~~~~~~~h~~~I-~~l~~spd~~~Las~s~Dg--~V~iwdl~~~~~~~~l~-----~~~~~I~si~~spd-g~~L~ 286 (715)
.+..-...-....... .+++...+++.++.|+.++ .+.+||+.+.+-...-. .......++.+..+ +++++
T Consensus 476 ~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv 555 (695)
T 2zwa_A 476 KTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGII 555 (695)
T ss_dssp TTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEE
T ss_pred CCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEE
Confidence 8764333211111111 1222323778888877654 79999997765332211 11222334555555 66777
Q ss_pred EEeC--C-----CcEEEEECCCCce-----eEEecc---CCCceEEEEEcCCCCEEEEEEC--------CCeEEEEECCC
Q 005096 287 SGGK--D-----SLVKLWDAKSGRE-----LCSFHG---HKNMVLCVKWNQNGNWVLTASK--------DQIIKLYDIRA 343 (715)
Q Consensus 287 sgs~--D-----g~I~iwDl~s~~~-----~~~~~~---~~~~I~sl~~spdg~~Lasgs~--------dg~I~iwDl~t 343 (715)
.|+. + +.+.+||+.+.+. ...+.. ....-.+++...++++++.|+. ...|.+||+.+
T Consensus 556 ~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t 635 (695)
T 2zwa_A 556 LGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLS 635 (695)
T ss_dssp ECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEETTT
T ss_pred ECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEEECCC
Confidence 7765 2 4588999987761 112211 1111122233333677777764 34689999987
Q ss_pred CeEE
Q 005096 344 MKEL 347 (715)
Q Consensus 344 ~~~~ 347 (715)
.+-.
T Consensus 636 ~~W~ 639 (695)
T 2zwa_A 636 ETLT 639 (695)
T ss_dssp TEEE
T ss_pred CeEE
Confidence 6544
|
| >1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1 | Back alignment and structure |
|---|
Probab=96.73 E-value=0.44 Score=49.54 Aligned_cols=230 Identities=7% Similarity=-0.004 Sum_probs=132.9
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCC----ceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCC---------Cee
Q 005096 196 HNDNWMVSGDDGGAIKYWQNNMN----NVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFAR---------CQE 262 (715)
Q Consensus 196 pdg~~L~tgs~dg~I~iwd~~~~----~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~---------~~~ 262 (715)
++..++++.+.+|.|+--.+... .....+ ...+.+..+..+.....|+..+..|.++-+...+ +..
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~l-ke~D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~ 81 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAM-KDTDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQH 81 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCC-CTTCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEE
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhhhcCcccccc-CCCCEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcC
Confidence 45677888999999987754321 111112 2345666677777778888889999877776521 221
Q ss_pred EE---EecccCCceEEE-EEcC--CCCEEEEEeCCCcEEEEECCC--------CceeEEeccCCCceEEEEEcCCCCEEE
Q 005096 263 ER---SLTGHGWDVKSV-DWHP--TKSLLVSGGKDSLVKLWDAKS--------GRELCSFHGHKNMVLCVKWNQNGNWVL 328 (715)
Q Consensus 263 ~~---~l~~~~~~I~si-~~sp--dg~~L~sgs~Dg~I~iwDl~s--------~~~~~~~~~~~~~I~sl~~spdg~~La 328 (715)
+. .+. ....|.++ .+.. ++.+|+.++.+|.++...+.. +.....+... +.+..+....+...|+
T Consensus 82 i~~~i~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~-d~lv~~~~~~~~~~i~ 159 (323)
T 1wp5_A 82 IANIIPID-RDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKND-DQVVDVHLTDGMNELF 159 (323)
T ss_dssp GGGTSCCC-TTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTT-CCEEEEEEECSCSEEE
T ss_pred hhhccCCC-CCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCCC-CEEEEEEEeCCCCEEE
Confidence 11 122 23345544 4432 256889999999999987642 2222233323 5555555555566788
Q ss_pred EEECCCeEEEEECCCC---------eEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCC-------CceEE
Q 005096 329 TASKDQIIKLYDIRAM---------KELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHE-------TPQVE 392 (715)
Q Consensus 329 sgs~dg~I~iwDl~t~---------~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~-------~~~~~ 392 (715)
..+.+|.+..++...- .....+. ....|.++.....+...|++.+..|..+..++..- .-...
T Consensus 160 l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~-~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e~~~~~Rg~kGv~~ 238 (323)
T 1wp5_A 160 LVTHNGYALWFDESEVSIVGVRAAGVKGMNLK-EGDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKRGVVI 238 (323)
T ss_dssp EEETTSEEEEEEGGGSCBCCSSCCCEECCCCC-TTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSCCEEC
T ss_pred EEeCCCcEEEEEHHHCcccCCCCcCEEEEEeC-CCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHHccccCCCCCCEEC
Confidence 8889999888876432 1222222 23456666554423327888888998888776431 11111
Q ss_pred E--eeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCC
Q 005096 393 I--HNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNR 429 (715)
Q Consensus 393 ~--~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~ 429 (715)
+ .......+..+....++..|+..+.+|.+...+++.
T Consensus 239 ~~~~~~~~~~l~~~~~v~~~~~i~~it~~g~~ir~~~~~ 277 (323)
T 1wp5_A 239 LRELKANPHRISGFVVAQDSDTIYLQTEKSFIETIKVGD 277 (323)
T ss_dssp SCCCSSSCCCEEEEEEECTTCEEEEEETTSCEEEEEGGG
T ss_pred eeecCCCCceEEEEEEeCCCCeEEEEeCCCeEEEEEhhh
Confidence 1 111122455443333445677777888877777754
|
| >3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=96.69 E-value=0.84 Score=48.32 Aligned_cols=228 Identities=10% Similarity=0.016 Sum_probs=128.7
Q ss_pred cCCCCEEEEEeCCCeEEEEeCCC---------CceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCC---C---
Q 005096 153 TPTGRRLITGSQSGEFTLWNGQS---------FNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNN---M--- 217 (715)
Q Consensus 153 spdg~~Latgs~dg~I~Iwd~~~---------~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~---~--- 217 (715)
-++..++++.+.+|.|+--.+.+ +.....++ ....+..+........|+..+..|.++-+... .
T Consensus 4 I~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lk-e~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~r 82 (370)
T 3l6v_A 4 IAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTK-EEDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAGS 82 (370)
T ss_dssp CCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECS-CCCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCT
T ss_pred ccCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccC-CCCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCCc
Confidence 46778899999999999865322 12222333 34556666666566777777778887665432 1
Q ss_pred ---Cceeeee--cCCCCCeEEEEEec---CCCEEEEEECCCcEEEEECCCC-------eeEEEecccCCceEEEEEcCCC
Q 005096 218 ---NNVKANK--SAHKESVRDLSFCR---TDLKFCSCSDDTTVKVWDFARC-------QEERSLTGHGWDVKSVDWHPTK 282 (715)
Q Consensus 218 ---~~~~~~~--~~h~~~I~~l~~sp---d~~~Las~s~Dg~V~iwdl~~~-------~~~~~l~~~~~~I~si~~spdg 282 (715)
+..+..+ -...+.|.++.... ++.+|+.++.+|.++...+... .....+.. .+.+..+....+.
T Consensus 83 ~a~G~~i~~ll~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~-~d~lv~v~~~~~~ 161 (370)
T 3l6v_A 83 NARGRPIINWIPLESGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDE-GDALVGVALTDGD 161 (370)
T ss_dssp TSCCEEGGGSCCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCT-TCCEEEEEEECSC
T ss_pred ccCCcCHhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCC-CCEEEEEEEeCCC
Confidence 1111111 12345566655432 4568999999999999987432 22223332 3445555554455
Q ss_pred CEEEEEeCCCcEEEEECCC---------CceeEEeccCCCceEEEEEcC-------------------------------
Q 005096 283 SLLVSGGKDSLVKLWDAKS---------GRELCSFHGHKNMVLCVKWNQ------------------------------- 322 (715)
Q Consensus 283 ~~L~sgs~Dg~I~iwDl~s---------~~~~~~~~~~~~~I~sl~~sp------------------------------- 322 (715)
..|+..+.+|.+..|+... |.....+. ....|.++....
T Consensus 162 ~~i~l~T~~G~~irf~~~~v~~~gR~a~GV~~i~L~-~~d~Vv~~~~~~~~~~~~~~~~~~~~~~~~~t~~g~~~~~~~~ 240 (370)
T 3l6v_A 162 RDVLLFASNGKTVRFGESTVRSMGRTATGVRGIRLA-KGEEVVSLIVSERAGGVEDEVEDESAEEVVETTDGAEPAVIDV 240 (370)
T ss_dssp CEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEEEECCC-----------------------------
T ss_pred ceEEEEeCCCeEEEEEccccCccCCCCCCeeeEEeC-CCCEEEEEEEecccccccccccccccccccccccccccccccc
Confidence 6777888889888886532 11111222 233455444433
Q ss_pred ----CCCEEEEEECCCeEEEEECCCCeE-------EE--EeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEc
Q 005096 323 ----NGNWVLTASKDQIIKLYDIRAMKE-------LE--SFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLV 384 (715)
Q Consensus 323 ----dg~~Lasgs~dg~I~iwDl~t~~~-------~~--~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~ 384 (715)
++.+|++.+..|..+...+..... +. .+....+.+..+.+.. ++..|+..+..|.+.-..+
T Consensus 241 ~~~~~~~~il~vTe~G~gKrt~~~e~~~~~Rg~kGv~~~k~~~~~g~lv~~~~v~-~~d~i~liT~~G~~iR~~v 314 (370)
T 3l6v_A 241 ADNGDVAYILTATENGYGKRTPLAEYPRKGRGTQGVIGIQTTERNGKLVRAVLLG-STDEVMLISDGGTLVRTRG 314 (370)
T ss_dssp ------CEEEEEETTSEEEEEEGGGSCCBCTTSCCEESSCCCTTTCSEEEEEEEC-TTCEEEEEETTCCEEEEEG
T ss_pred ccccCCceEEEeeCCCCEEEEEHHHhcccccCCcceEEEEecCCCCcEEEEEEeC-CCceEEEEcCCCeEEEeeH
Confidence 446889999999998887743221 22 2222334455544443 4445555566676655554
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=96.68 E-value=0.065 Score=52.27 Aligned_cols=149 Identities=14% Similarity=0.077 Sum_probs=86.2
Q ss_pred CceEEEEEcCCCCEEEEEeCCCcEEEEECCCCcee------EEe-ccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCC
Q 005096 271 WDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGREL------CSF-HGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRA 343 (715)
Q Consensus 271 ~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~------~~~-~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t 343 (715)
..+++++|+|++.+.++ .+|.|+-.+..+.... ..+ ...-....++.|.++|.+.++ .||.|+-++--+
T Consensus 41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~ 116 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQ 116 (236)
T ss_dssp TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCC
T ss_pred ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCc
Confidence 46789999999886666 6787777776542221 111 001111478999999987777 569988777533
Q ss_pred CeE-------EEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCC------ceEEEeeccCCCEEEEEEcCCC
Q 005096 344 MKE-------LESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHET------PQVEIHNVHDNTVWDLAWHPIG 410 (715)
Q Consensus 344 ~~~-------~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~------~~~~~~~~h~~~V~~l~~spdg 410 (715)
... ...-...-..+..|.+.| ++.+.++. |+.++-+.--... ....+....-.....+.|.+++
T Consensus 117 ~~~~~Wl~~a~~vg~~gw~~~~~lff~p-~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G 193 (236)
T 1tl2_A 117 SDTDNWIARATEVGSGGWSGFKFLFFHP-NGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVG 193 (236)
T ss_dssp STTCCHHHHSEEEECSSGGGEEEEEECT-TSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTS
T ss_pred CCCCceeccccEeccCCCCceEEEEECC-CceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCC
Confidence 111 111111224678999999 77777666 7775433222111 0111111222344557789888
Q ss_pred CEEEEEECCCeEEEEecCCC
Q 005096 411 YLLCSGSNDHTTKFWCRNRP 430 (715)
Q Consensus 411 ~~L~sgs~Dg~I~iWdl~~~ 430 (715)
.+.++. +| +||....+
T Consensus 194 ~l~~v~--~g--~~Y~~~~p 209 (236)
T 1tl2_A 194 TLFGVQ--GG--KFYEDYPP 209 (236)
T ss_dssp CEEEEE--TT--EEEEESCC
T ss_pred cEEEEe--CC--eEEecCCc
Confidence 777666 66 55665443
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=96.66 E-value=0.049 Score=66.47 Aligned_cols=204 Identities=9% Similarity=0.100 Sum_probs=124.5
Q ss_pred EcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC-ceeeeecCC---
Q 005096 152 WTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN-NVKANKSAH--- 227 (715)
Q Consensus 152 ~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~-~~~~~~~~h--- 227 (715)
.+|..+.||.-. ..++.|+|+++...++.+...+ .|.-=.|..+. .|+..+ +..|.-|+++.. ..+..+..|
T Consensus 73 MnP~~~iiALra-g~~lQiFnl~~k~klks~~~~e-~VvfWkWis~~-~l~lVT-~~aVyHW~~~~~s~P~k~fdR~~~L 148 (1630)
T 1xi4_A 73 MNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRHSSL 148 (1630)
T ss_pred cCCCcceEEEec-CCeEEEeehHHhhhhcccccCC-CceEEEecCCC-eeEEEc-CCeEEEeccCCCCccHHHHhcchhc
Confidence 455555555443 6789999999988888777644 45555676444 443333 457999999653 222223222
Q ss_pred -CCCeEEEEEecCCCEEEEEE-------CCCcEEEEECCCCeeEEEecccCCceEEEEEcCC---CCEEEEEeC---CCc
Q 005096 228 -KESVRDLSFCRTDLKFCSCS-------DDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPT---KSLLVSGGK---DSL 293 (715)
Q Consensus 228 -~~~I~~l~~spd~~~Las~s-------~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spd---g~~L~sgs~---Dg~ 293 (715)
...|.....+++.++++..+ -.|.+.+|.++.. ....+.+|......+.+..+ ..+++.+.. .+.
T Consensus 149 ~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~-~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~k 227 (1630)
T 1xi4_A 149 AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGK 227 (1630)
T ss_pred ccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc-cchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCce
Confidence 45677777788888876543 2478888887653 44556666655544444311 223333322 268
Q ss_pred EEEEECCCC---cee------EEec---cCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEE
Q 005096 294 VKLWDAKSG---REL------CSFH---GHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTAL 360 (715)
Q Consensus 294 I~iwDl~s~---~~~------~~~~---~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l 360 (715)
+.|.++... ... ..+. ...+--.++..++.-..++..+.-|.|.+||+.|+.++..-+.....|...
T Consensus 228 Lhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ris~~~iF~~ 306 (1630)
T 1xi4_A 228 LHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVT 306 (1630)
T ss_pred EEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhccccCCceEEe
Confidence 888888542 111 1111 112334567778877888899999999999999999887666444444333
|
| >3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.61 E-value=0.24 Score=50.31 Aligned_cols=196 Identities=9% Similarity=0.014 Sum_probs=118.0
Q ss_pred CccEEEEEEcCCCCEEEEEeCCCeEEEEe---CCCCceEEEEeccCCCEEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCc
Q 005096 144 RCSINRVLWTPTGRRLITGSQSGEFTLWN---GQSFNFEMILQAHDHAIRSMVWSH-NDNWMVSGDDGGAIKYWQNNMNN 219 (715)
Q Consensus 144 ~~~I~~l~~spdg~~Latgs~dg~I~Iwd---~~~~~~~~~l~~h~~~V~~l~~sp-dg~~L~tgs~dg~I~iwd~~~~~ 219 (715)
.+.|.++.......+|+.-+.+|.++--. +...+....+ ..+..|..+.... ++.++++.+.+|.|+...+..-.
T Consensus 23 gD~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~ll-~~~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~ 101 (276)
T 3no0_A 23 KAPVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVSLK-SREEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFE 101 (276)
T ss_dssp CCCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECCCS-STTCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTT
T ss_pred CCeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcccccC-CCCCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhh
Confidence 34566665555666788888888776543 2222111112 2355666664422 56789999999999998765431
Q ss_pred -----e-eeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCC---------CeeEEEecccCCceEEEEEcCCCCE
Q 005096 220 -----V-KANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFAR---------CQEERSLTGHGWDVKSVDWHPTKSL 284 (715)
Q Consensus 220 -----~-~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~---------~~~~~~l~~~~~~I~si~~spdg~~ 284 (715)
. ...+. ..+.+..+....+...|+..+.+|.+..++..+ +.....+. ....|.++....++..
T Consensus 102 ~~~~G~~~i~lk-egD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~-~~d~vv~~~~~~~~~~ 179 (276)
T 3no0_A 102 YKAQGMPIIKLT-EGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLE-KNDETSGLRIWNGEPY 179 (276)
T ss_dssp TCSTTEECSCCC-TTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEEEESSCSE
T ss_pred hhcCCeEEEecC-CCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccC-CCCEEEEEEEeCCCCE
Confidence 1 11122 345676776666777899999999999888632 11222232 2345666555556678
Q ss_pred EEEEeCCCcEEEEECCC-------CceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEE--EECCC
Q 005096 285 LVSGGKDSLVKLWDAKS-------GRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKL--YDIRA 343 (715)
Q Consensus 285 L~sgs~Dg~I~iwDl~s-------~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~i--wDl~t 343 (715)
|+..+..|.++..++.. ++-+..+. ..+.+..+....+...|+..+.+|.+.. ++...
T Consensus 180 ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i~-~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~~~ 246 (276)
T 3no0_A 180 LLVITAKGRVKKISHEEIPKTNRGVKGTEVSG-TKDTLVDLIPIKEEVELLITTKNGKAFYDKINQKD 246 (276)
T ss_dssp EEEEETTSCEEEEEGGGSCCCCTTCCCEECCC-SSSCEEEEEEESSEEEEEEEETTSCEEEEEEEGGG
T ss_pred EEEEeCCCcEEEeEHHHcccCCCCCcceEEEc-CCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCHHH
Confidence 88899999999887642 22233332 3344554444334456677777787777 76543
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=96.60 E-value=0.054 Score=52.84 Aligned_cols=141 Identities=8% Similarity=-0.023 Sum_probs=81.8
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeecCCCCC--------eEEEEEecCCCEEEEEECCCcEEEEECC
Q 005096 187 HAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKES--------VRDLSFCRTDLKFCSCSDDTTVKVWDFA 258 (715)
Q Consensus 187 ~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~--------I~~l~~spd~~~Las~s~Dg~V~iwdl~ 258 (715)
..+++++|++++.+.++ .+|.+.-.+..+.....-+. .... ..++.|.+++.+.++ .||.|+-++--
T Consensus 41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~-s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP 115 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMG-RAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPP 115 (236)
T ss_dssp TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHH-HCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCC
T ss_pred ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccc-cccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCC
Confidence 46779999999987776 66776666654421111111 1122 478899999987777 56888887752
Q ss_pred CCeeE------EEe-cccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCce------eEE-eccCCCceEEEEEcCCC
Q 005096 259 RCQEE------RSL-TGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRE------LCS-FHGHKNMVLCVKWNQNG 324 (715)
Q Consensus 259 ~~~~~------~~l-~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~------~~~-~~~~~~~I~sl~~spdg 324 (715)
+.... ..+ ...=..+..|.+.|+|.+.++. |+.++-+..-++.. ... ....-...+.+.|.+++
T Consensus 116 ~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G 193 (236)
T 1tl2_A 116 QSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVG 193 (236)
T ss_dssp CSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTS
T ss_pred cCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCC
Confidence 21111 111 1112467999999999977766 77754432221110 111 11223345567788888
Q ss_pred CEEEEEECCCeE
Q 005096 325 NWVLTASKDQII 336 (715)
Q Consensus 325 ~~Lasgs~dg~I 336 (715)
.++++. ++.|
T Consensus 194 ~l~~v~--~g~~ 203 (236)
T 1tl2_A 194 TLFGVQ--GGKF 203 (236)
T ss_dssp CEEEEE--TTEE
T ss_pred cEEEEe--CCeE
Confidence 766665 6644
|
| >3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.57 E-value=0.42 Score=48.48 Aligned_cols=193 Identities=12% Similarity=0.086 Sum_probs=112.5
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEe---CCCCceeeeecCCCCCeEEEEEec--CCCEEEEEECCCcEEEEECCCCe
Q 005096 187 HAIRSMVWSHNDNWMVSGDDGGAIKYWQ---NNMNNVKANKSAHKESVRDLSFCR--TDLKFCSCSDDTTVKVWDFARCQ 261 (715)
Q Consensus 187 ~~V~~l~~spdg~~L~tgs~dg~I~iwd---~~~~~~~~~~~~h~~~I~~l~~sp--d~~~Las~s~Dg~V~iwdl~~~~ 261 (715)
+.+..+.-....++|+.-+++|.++... +........+ ...+.|..+.. . ++.+++.++.+|.|+...+.+..
T Consensus 24 D~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~ll-~~~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~~l~~~~ 101 (276)
T 3no0_A 24 APVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVSLK-SREEKIVGAFI-REKFGNRLLLATKKGYVKKIPLAEFE 101 (276)
T ss_dssp CCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECCCS-STTCCEEEEEE-GGGSCSEEEEEETTSEEEEEEGGGTT
T ss_pred CeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcccccC-CCCCEEEEEEC-CcCCCCEEEEEeCCCEEEEEEHHHhh
Confidence 3455554444445555566677766443 2222111112 23556666654 4 56789999999999999875532
Q ss_pred ------eEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCC---------CceeEEeccCCCceEEEEEcCCCCE
Q 005096 262 ------EERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKS---------GRELCSFHGHKNMVLCVKWNQNGNW 326 (715)
Q Consensus 262 ------~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s---------~~~~~~~~~~~~~I~sl~~spdg~~ 326 (715)
....+. ..+.+..+....+...|+..+.+|.++.++... |.....+.. ...|.++....++.+
T Consensus 102 ~~~~G~~~i~lk-egD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~~-~d~vv~~~~~~~~~~ 179 (276)
T 3no0_A 102 YKAQGMPIIKLT-EGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLEK-NDETSGLRIWNGEPY 179 (276)
T ss_dssp TCSTTEECSCCC-TTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCT-TCCEEEEEEESSCSE
T ss_pred hhcCCeEEEecC-CCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccCC-CCEEEEEEEeCCCCE
Confidence 122233 344566666665666888888999988886532 112222332 345666655556678
Q ss_pred EEEEECCCeEEEEECCCC-------eEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEE--EEcC
Q 005096 327 VLTASKDQIIKLYDIRAM-------KELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFH--WLVG 385 (715)
Q Consensus 327 Lasgs~dg~I~iwDl~t~-------~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~i--wd~~ 385 (715)
|++.+..|.++..++... +-+..+ ...+.+..+.... ++..++..+.+|.+.. ++.+
T Consensus 180 ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i-~~~~~lv~~~~~~-~~~~i~~~t~~G~~ir~~~~~~ 245 (276)
T 3no0_A 180 LLVITAKGRVKKISHEEIPKTNRGVKGTEVS-GTKDTLVDLIPIK-EEVELLITTKNGKAFYDKINQK 245 (276)
T ss_dssp EEEEETTSCEEEEEGGGSCCCCTTCCCEECC-CSSSCEEEEEEES-SEEEEEEEETTSCEEEEEEEGG
T ss_pred EEEEeCCCcEEEeEHHHcccCCCCCcceEEE-cCCCcEEEEEEeC-CCCEEEEEcCCCeEEEeeeCHH
Confidence 999999999998886432 222233 2233444444333 4456666777777777 7653
|
| >2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A | Back alignment and structure |
|---|
Probab=96.56 E-value=0.5 Score=51.76 Aligned_cols=105 Identities=11% Similarity=0.086 Sum_probs=61.0
Q ss_pred ccEEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCc---eEEEEe---------ccCCCEEEEEEcCC---CCEEEEE-eC-
Q 005096 145 CSINRVLWTPTGR-RLITGSQSGEFTLWNGQSFN---FEMILQ---------AHDHAIRSMVWSHN---DNWMVSG-DD- 206 (715)
Q Consensus 145 ~~I~~l~~spdg~-~Latgs~dg~I~Iwd~~~~~---~~~~l~---------~h~~~V~~l~~spd---g~~L~tg-s~- 206 (715)
..-..|+|.+||+ +|+++...|.|++++..... .+..+. ........|+|+++ +.+|++. +.
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~ 93 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN 93 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence 3467899999996 57777889999999754321 122221 11456889999986 3344332 21
Q ss_pred -C----------CcEEEEeCCCC----------ceeeeec--CCCCCeEEEEEecCCCEEEEEECC
Q 005096 207 -G----------GAIKYWQNNMN----------NVKANKS--AHKESVRDLSFCRTDLKFCSCSDD 249 (715)
Q Consensus 207 -d----------g~I~iwd~~~~----------~~~~~~~--~h~~~I~~l~~spd~~~Las~s~D 249 (715)
+ ..|.-|.+... +.+..+. ........|+|.+|+.++++.++.
T Consensus 94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~ 159 (463)
T 2wg3_C 94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDG 159 (463)
T ss_dssp CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCT
T ss_pred CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCC
Confidence 1 13444554321 1222221 222346789999999877766553
|
| >4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi} | Back alignment and structure |
|---|
Probab=96.47 E-value=0.35 Score=55.96 Aligned_cols=229 Identities=10% Similarity=0.063 Sum_probs=119.4
Q ss_pred EcCCCCEEEEE-eC----CCcEEEEeCCCCceeee-ec-CCCC------CeEEEEEecCCCEEEEEEC-----------C
Q 005096 194 WSHNDNWMVSG-DD----GGAIKYWQNNMNNVKAN-KS-AHKE------SVRDLSFCRTDLKFCSCSD-----------D 249 (715)
Q Consensus 194 ~spdg~~L~tg-s~----dg~I~iwd~~~~~~~~~-~~-~h~~------~I~~l~~spd~~~Las~s~-----------D 249 (715)
+++++++++.+ +. ...|+++|+++++.+.. +. ..+. ....++|..+ +.++.+.. .
T Consensus 137 ~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d~-~~~~~~~~~~~~~~~~~~~~ 215 (711)
T 4hvt_A 137 CFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWINK-DTIIFNLVLHKNEITSSLYP 215 (711)
T ss_dssp CSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEET-TEEEECCCCSTTCBCTTSSB
T ss_pred cCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEECC-CEEEEEeCCCCCCcCcCCCC
Confidence 78888877643 22 24689999999876532 11 0011 1244578744 44444321 2
Q ss_pred CcEEEEECCCCe--eEEEecccCCce-EEEEEcCCCC-----EEEEEeCC---CcEEEEECCC--CceeEEeccCCCceE
Q 005096 250 TTVKVWDFARCQ--EERSLTGHGWDV-KSVDWHPTKS-----LLVSGGKD---SLVKLWDAKS--GRELCSFHGHKNMVL 316 (715)
Q Consensus 250 g~V~iwdl~~~~--~~~~l~~~~~~I-~si~~spdg~-----~L~sgs~D---g~I~iwDl~s--~~~~~~~~~~~~~I~ 316 (715)
.+|+.|.+.+.. -...+.+....+ .+...+.+++ .+++.+.+ ..+.+.|+.. ++ +..+..... .
T Consensus 216 ~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~-~- 292 (711)
T 4hvt_A 216 NSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLK-LQKINMPSD-A- 292 (711)
T ss_dssp CEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCE-EEECCSCTT-C-
T ss_pred CEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCc-ceEeecCCc-c-
Confidence 468999886542 233344333332 3455566666 24443322 4566667653 32 233322222 1
Q ss_pred EEEEcCCCCEEEEE----------ECCCeEEEEECCCCe-------EEEE-ee-cCCCCeEEEEEccCCCCEEEEEeCCC
Q 005096 317 CVKWNQNGNWVLTA----------SKDQIIKLYDIRAMK-------ELES-FR-GHRKDVTALAWHPFHEEYFVSGSLDG 377 (715)
Q Consensus 317 sl~~spdg~~Lasg----------s~dg~I~iwDl~t~~-------~~~~-~~-~h~~~V~~l~~sp~~~~~l~sgs~DG 377 (715)
.+..+.++.+++.. ...+.|.+.|+.+.. .... +. ..+..+..+.|.. +.++++...++
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~l~~~~~~~~ 370 (711)
T 4hvt_A 293 TLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTK--DRVFLATYDNV 370 (711)
T ss_dssp EEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECS--SCEEEEEEETT
T ss_pred eEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEEC--CEEEEEEEECC
Confidence 12233355444422 246789999987631 2222 22 2344677888874 57888888887
Q ss_pred c--EEEEEcCCCC-ceEE-EeeccCCCEEEEEEcCCC-CEEEEEEC---CCeEEEEecC
Q 005096 378 S--IFHWLVGHET-PQVE-IHNVHDNTVWDLAWHPIG-YLLCSGSN---DHTTKFWCRN 428 (715)
Q Consensus 378 ~--I~iwd~~~~~-~~~~-~~~~h~~~V~~l~~spdg-~~L~sgs~---Dg~I~iWdl~ 428 (715)
. |.++|+.++. .... +.....+.|..+.++.++ .++++.+. -+.+..+|+.
T Consensus 371 ~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 371 VAKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT 429 (711)
T ss_dssp EEEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred EEEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence 5 5666654442 1222 221123467666666665 45555443 2456666654
|
| >3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=96.44 E-value=0.8 Score=48.48 Aligned_cols=231 Identities=10% Similarity=0.011 Sum_probs=134.6
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCC---------CceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCC------
Q 005096 195 SHNDNWMVSGDDGGAIKYWQNNM---------NNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFAR------ 259 (715)
Q Consensus 195 spdg~~L~tgs~dg~I~iwd~~~---------~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~------ 259 (715)
-++..++++.+.+|.|+--.+.. +.....+ ...+.+..+..+.....|+..+..|.++.+....
T Consensus 4 I~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~l-ke~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~r 82 (370)
T 3l6v_A 4 IAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAAST-KEEDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAGS 82 (370)
T ss_dssp CCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEEC-SCCCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCT
T ss_pred ccCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceeccc-CCCCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCCc
Confidence 46778899999999998765322 1122222 3456777777777778888888999887776421
Q ss_pred ---CeeEEE---ecccCCceEEEE-Ec--CCCCEEEEEeCCCcEEEEECCC-------CceeEEeccCCCceEEEEEcCC
Q 005096 260 ---CQEERS---LTGHGWDVKSVD-WH--PTKSLLVSGGKDSLVKLWDAKS-------GRELCSFHGHKNMVLCVKWNQN 323 (715)
Q Consensus 260 ---~~~~~~---l~~~~~~I~si~-~s--pdg~~L~sgs~Dg~I~iwDl~s-------~~~~~~~~~~~~~I~sl~~spd 323 (715)
+..+.. +. ....|.++. +. .++.+|+.++..|.++...+.. +.....++. ...+..+....+
T Consensus 83 ~a~G~~i~~ll~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~-~d~lv~v~~~~~ 160 (370)
T 3l6v_A 83 NARGRPIINWIPLE-SGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDE-GDALVGVALTDG 160 (370)
T ss_dssp TSCCEEGGGSCCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCT-TCCEEEEEEECS
T ss_pred ccCCcCHhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCC-CCEEEEEEEeCC
Confidence 222111 22 234455544 33 2456899999999999987642 222223333 344555555555
Q ss_pred CCEEEEEECCCeEEEEECCC---------CeEEEEeecCCCCeEEEEEccC-----------------------------
Q 005096 324 GNWVLTASKDQIIKLYDIRA---------MKELESFRGHRKDVTALAWHPF----------------------------- 365 (715)
Q Consensus 324 g~~Lasgs~dg~I~iwDl~t---------~~~~~~~~~h~~~V~~l~~sp~----------------------------- 365 (715)
...|+..+.+|.+..++... |.....+. ....|.++.....
T Consensus 161 ~~~i~l~T~~G~~irf~~~~v~~~gR~a~GV~~i~L~-~~d~Vv~~~~~~~~~~~~~~~~~~~~~~~~~t~~g~~~~~~~ 239 (370)
T 3l6v_A 161 DRDVLLFASNGKTVRFGESTVRSMGRTATGVRGIRLA-KGEEVVSLIVSERAGGVEDEVEDESAEEVVETTDGAEPAVID 239 (370)
T ss_dssp CCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEEEECCC----------------------------
T ss_pred CceEEEEeCCCeEEEEEccccCccCCCCCCeeeEEeC-CCCEEEEEEEeccccccccccccccccccccccccccccccc
Confidence 66788888899888887643 21222222 2334544444331
Q ss_pred -----CCCEEEEEeCCCcEEEEEcCCC-------CceEEE-eeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCC
Q 005096 366 -----HEEYFVSGSLDGSIFHWLVGHE-------TPQVEI-HNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNR 429 (715)
Q Consensus 366 -----~~~~l~sgs~DG~I~iwd~~~~-------~~~~~~-~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~ 429 (715)
++..|++.+..|..+...+..- .-+..+ +....+.+..+.+..+...|+..+..|.+.-..++.
T Consensus 240 ~~~~~~~~~il~vTe~G~gKrt~~~e~~~~~Rg~kGv~~~k~~~~~g~lv~~~~v~~~d~i~liT~~G~~iR~~v~~ 316 (370)
T 3l6v_A 240 VADNGDVAYILTATENGYGKRTPLAEYPRKGRGTQGVIGIQTTERNGKLVRAVLLGSTDEVMLISDGGTLVRTRGSE 316 (370)
T ss_dssp -------CEEEEEETTSEEEEEEGGGSCCBCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEETTCCEEEEEGGG
T ss_pred cccccCCceEEEeeCCCCEEEEEHHHhcccccCCcceEEEEecCCCCcEEEEEEeCCCceEEEEcCCCeEEEeeHhh
Confidence 3457888899999888876321 111111 111234555555545556677777788777766643
|
| >3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=96.39 E-value=1.4 Score=47.34 Aligned_cols=234 Identities=11% Similarity=-0.068 Sum_probs=126.5
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc------------eeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEE
Q 005096 187 HAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNN------------VKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKV 254 (715)
Q Consensus 187 ~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~------------~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~i 254 (715)
..|..|+.. +.+.+.-..||.|+.|-.+... ..-........|..|+. ...+.++.+.||.|+.
T Consensus 75 ~~v~~va~G--~~h~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~~~~~i~~va~--G~~hs~al~~~G~v~~ 150 (423)
T 3mvd_K 75 PDAVDISAG--GMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGSESKPDLIDLPGKALCISA--GDSHSACLLEDGRVFA 150 (423)
T ss_dssp SSEEEEEEC--SSEEEEEETTSCEEEEECCSSSTTCSCCCSTTSSSSCEECCCSSCEEEEEE--CSSEEEEEETTSCEEE
T ss_pred CCceEEeeC--CCeEEEEeCCCeEEEeECCCCcCCCCCCcCCccccCCeEEcCCCCEEEEEc--CcCeEEEEeCCCeEEE
Confidence 346666553 4566666788999999543211 00011112345655554 4456667788999999
Q ss_pred EEC--CC-Cee---------EEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCc-------------------
Q 005096 255 WDF--AR-CQE---------ERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGR------------------- 303 (715)
Q Consensus 255 wdl--~~-~~~---------~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~------------------- 303 (715)
|-. +. ++. ..........|..|+.. ....++...||.|+.|-....-
T Consensus 151 wG~~~n~~GqlG~~~~~~~~~p~~~~~~~~i~~va~G--~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~ 228 (423)
T 3mvd_K 151 WGSFRDSHGNMGLTIDGNKRTPIDLMEGTVCCSIASG--ADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKR 228 (423)
T ss_dssp EECEECSSSEEESBTTBCEEEEEESSTTCCEEEEEEC--SSEEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCSTTTTT
T ss_pred EeCCCCCCCCcCcCCCCCCceeeEecCCCcEEEEecC--CCeEEEEecCCeEEEeeCCcCCccCCCcccccccccccccc
Confidence 985 22 111 11111233457777765 3455666788999999643210
Q ss_pred ----eeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCC-----------CeEEEEeecCCCCeEEEEEccCCCC
Q 005096 304 ----ELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRA-----------MKELESFRGHRKDVTALAWHPFHEE 368 (715)
Q Consensus 304 ----~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t-----------~~~~~~~~~h~~~V~~l~~sp~~~~ 368 (715)
...........|..|+... ...++.-..|+.|+.|-... .............|..|+. +..
T Consensus 229 ~~~~p~~v~~~~~~~v~~i~~g~-~~~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~~~v~~ia~---G~~ 304 (423)
T 3mvd_K 229 DLLRPTQLIITRAKPFEAIWATN-YCTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTELKDIRHIAG---GQH 304 (423)
T ss_dssp TTSSCEEECCTTCCCEEEEEEET-TEEEEEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEECCCSEEEEEE---CSS
T ss_pred cccCCeEEeecCCccEEEEEECC-cEEEEEECCCCeEEEEeCCCCCcCCCCCCCCceeeeeEEcCCCCeEEEEc---ccC
Confidence 0111111223455555432 22233335788888886432 1111122222456777765 566
Q ss_pred EEEEEeCCCcEEEEEcCCCC--------c---eEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCCCCC
Q 005096 369 YFVSGSLDGSIFHWLVGHET--------P---QVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGD 432 (715)
Q Consensus 369 ~l~sgs~DG~I~iwd~~~~~--------~---~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~~ 432 (715)
..+.-..||.|+.|-.+... . ...........|..|+.. ....++...||.|+.|=.+..+.
T Consensus 305 ht~alt~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~~~v~~ia~G--~~hs~alt~~G~v~~wG~n~~Gq 377 (423)
T 3mvd_K 305 HTVILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLTEKIVSVGCG--EVCSYAVTIDGKLYSWGSGVNNQ 377 (423)
T ss_dssp EEEEEETTCCEEEEECCGGGTTCSSSCCSCEEEEEECTTCCSCEEEEEEE--TTEEEEEETTSCEEEEECCTTSC
T ss_pred eEEEEeCCCcEEEEECCCCCCCCCCCccccccCceEeccCCCCEEEEEcC--CCeEEEEcCCCCEEEECCCCCCC
Confidence 66777889999999653211 1 111222222367777765 34455558899999998776554
|
| >3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A | Back alignment and structure |
|---|
Probab=96.36 E-value=0.00054 Score=75.33 Aligned_cols=6 Identities=17% Similarity=0.949 Sum_probs=3.1
Q ss_pred EEEEEe
Q 005096 93 QIRMWQ 98 (715)
Q Consensus 93 ~irvW~ 98 (715)
+|.+|.
T Consensus 6 tltvw~ 11 (449)
T 3iot_A 6 KLVIWI 11 (449)
T ss_dssp SEEEEC
T ss_pred eEEEEe
Confidence 455553
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=96.36 E-value=0.083 Score=61.27 Aligned_cols=191 Identities=9% Similarity=0.056 Sum_probs=102.4
Q ss_pred CCCCEEEEEeCC----CcEEEEeCCCCceeeee-c------CCCCCeEEEEEec-CCCEEEEEECC------CcEEEEEC
Q 005096 196 HNDNWMVSGDDG----GAIKYWQNNMNNVKANK-S------AHKESVRDLSFCR-TDLKFCSCSDD------TTVKVWDF 257 (715)
Q Consensus 196 pdg~~L~tgs~d----g~I~iwd~~~~~~~~~~-~------~h~~~I~~l~~sp-d~~~Las~s~D------g~V~iwdl 257 (715)
-++.+++.|+.+ ..+.+||..+++..... . .....-.+++... +++.++.|+.+ +.+.+||+
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence 356777777753 46888888776543322 1 1111122333333 66677777643 35889998
Q ss_pred CCCeeEEE--ecccCCceEEEEEcCCCCEEEEEeCCC--cEEEEECCCCceeEEec-----cCCCceEEEEEcCC-CCEE
Q 005096 258 ARCQEERS--LTGHGWDVKSVDWHPTKSLLVSGGKDS--LVKLWDAKSGRELCSFH-----GHKNMVLCVKWNQN-GNWV 327 (715)
Q Consensus 258 ~~~~~~~~--l~~~~~~I~si~~spdg~~L~sgs~Dg--~I~iwDl~s~~~~~~~~-----~~~~~I~sl~~spd-g~~L 327 (715)
.+.+-... +....... +++...++++++.|+.++ .+.+||+.+.+-...-. .......++.+..+ ++++
T Consensus 476 ~t~~W~~~~~~p~~R~~h-~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iy 554 (695)
T 2zwa_A 476 KTREWSMIKSLSHTRFRH-SACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGI 554 (695)
T ss_dssp TTTEEEECCCCSBCCBSC-EEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEE
T ss_pred CCCcEEECCCCCCCcccc-eEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEE
Confidence 77543222 22111222 333323788888887654 68999998764322111 01122233555554 5666
Q ss_pred EEEEC--C-----CeEEEEECCCCe--------EEEEee-cCCCCeEEEEEccCCCCEEEEEeC--------CCcEEEEE
Q 005096 328 LTASK--D-----QIIKLYDIRAMK--------ELESFR-GHRKDVTALAWHPFHEEYFVSGSL--------DGSIFHWL 383 (715)
Q Consensus 328 asgs~--d-----g~I~iwDl~t~~--------~~~~~~-~h~~~V~~l~~sp~~~~~l~sgs~--------DG~I~iwd 383 (715)
+.|+. + ..|.+||+.+.+ .+.... ........+.+. ++.+++.|+. ...|.+||
T Consensus 555 v~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~v~~yd 632 (695)
T 2zwa_A 555 ILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYIT--PRKLLIVGGTSPSGLFDRTNSIISLD 632 (695)
T ss_dssp EECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEE--TTEEEEECCBCSSCCCCTTTSEEEEE
T ss_pred EECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeC--CCEEEEECCccCCCCCCCCCeEEEEE
Confidence 77765 2 468899998765 122211 111122233331 2777777774 34588999
Q ss_pred cCCCCc
Q 005096 384 VGHETP 389 (715)
Q Consensus 384 ~~~~~~ 389 (715)
..+...
T Consensus 633 ~~t~~W 638 (695)
T 2zwa_A 633 PLSETL 638 (695)
T ss_dssp TTTTEE
T ss_pred CCCCeE
Confidence 877643
|
| >1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1 | Back alignment and structure |
|---|
Probab=96.28 E-value=0.71 Score=47.96 Aligned_cols=228 Identities=11% Similarity=0.098 Sum_probs=126.3
Q ss_pred CCCCEEEEEeCCCeEEEEeCCCCc----eEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCC---C------Cce
Q 005096 154 PTGRRLITGSQSGEFTLWNGQSFN----FEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNN---M------NNV 220 (715)
Q Consensus 154 pdg~~Latgs~dg~I~Iwd~~~~~----~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~---~------~~~ 220 (715)
++..++++.+.+|.|+--.+.+.+ ....+.. .+.+..+......+.|+..+..|.++-+... . +..
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lke-~D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~ 81 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMKD-TDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQH 81 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCCT-TCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEE
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhhhcCccccccCC-CCEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcC
Confidence 456678899999999877543211 1111222 3345455555556667777778887665432 1 111
Q ss_pred eee-ec-CCCCCeEEEEEecC---CCEEEEEECCCcEEEEECCCC--------eeEEEecccCCceEEEEEcCCCCEEEE
Q 005096 221 KAN-KS-AHKESVRDLSFCRT---DLKFCSCSDDTTVKVWDFARC--------QEERSLTGHGWDVKSVDWHPTKSLLVS 287 (715)
Q Consensus 221 ~~~-~~-~h~~~I~~l~~spd---~~~Las~s~Dg~V~iwdl~~~--------~~~~~l~~~~~~I~si~~spdg~~L~s 287 (715)
+.. +. ...+.|.++....+ +.+|+.++.+|.++...+... .....+.. .+.+..+....+...|+.
T Consensus 82 i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e-~d~lv~~~~~~~~~~i~l 160 (323)
T 1wp5_A 82 IANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKN-DDQVVDVHLTDGMNELFL 160 (323)
T ss_dssp GGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCT-TCCEEEEEEECSCSEEEE
T ss_pred hhhccCCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCC-CCEEEEEEEeCCCCEEEE
Confidence 111 11 12345665544332 568999999999999987422 22222332 245555555545567888
Q ss_pred EeCCCcEEEEECCC----Cc-----eeEEeccCCCceEEEEEcCCCC-EEEEEECCCeEEEEECCCC-------eEEEEe
Q 005096 288 GGKDSLVKLWDAKS----GR-----ELCSFHGHKNMVLCVKWNQNGN-WVLTASKDQIIKLYDIRAM-------KELESF 350 (715)
Q Consensus 288 gs~Dg~I~iwDl~s----~~-----~~~~~~~~~~~I~sl~~spdg~-~Lasgs~dg~I~iwDl~t~-------~~~~~~ 350 (715)
.+.+|.+..++... ++ ....+. ....|.++....++. .|++.+..|..+..++... +-+..+
T Consensus 161 ~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~-~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e~~~~~Rg~kGv~~~ 239 (323)
T 1wp5_A 161 VTHNGYALWFDESEVSIVGVRAAGVKGMNLK-EGDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKRGVVIL 239 (323)
T ss_dssp EETTSEEEEEEGGGSCBCCSSCCCEECCCCC-TTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSCCEECS
T ss_pred EeCCCcEEEEEHHHCcccCCCCcCEEEEEeC-CCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHHccccCCCCCCEECe
Confidence 88899988887642 11 112222 234466665444445 7888889999888877532 112222
Q ss_pred e---cCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcC
Q 005096 351 R---GHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVG 385 (715)
Q Consensus 351 ~---~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~ 385 (715)
+ .....+..+.... ++..|+..+.+|.+..+.++
T Consensus 240 ~~~~~~~~~l~~~~~v~-~~~~i~~it~~g~~ir~~~~ 276 (323)
T 1wp5_A 240 RELKANPHRISGFVVAQ-DSDTIYLQTEKSFIETIKVG 276 (323)
T ss_dssp CCCSSSCCCEEEEEEEC-TTCEEEEEETTSCEEEEEGG
T ss_pred eecCCCCceEEEEEEeC-CCCeEEEEeCCCeEEEEEhh
Confidence 2 2222444333222 34556666777777666654
|
| >1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.23 E-value=1.3 Score=45.47 Aligned_cols=229 Identities=10% Similarity=-0.012 Sum_probs=130.9
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCceeee--------ecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCC---------
Q 005096 197 NDNWMVSGDDGGAIKYWQNNMNNVKAN--------KSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFAR--------- 259 (715)
Q Consensus 197 dg~~L~tgs~dg~I~iwd~~~~~~~~~--------~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~--------- 259 (715)
+..++++.+.+|.|+--.+...+.... .....+.+..+..+.....|+..+..|.++-+...+
T Consensus 2 ~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke~D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~a~ 81 (307)
T 1zi0_A 2 QEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGAR 81 (307)
T ss_dssp CCEEEEEEETTSEEEEEECC--------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSSSC
T ss_pred CCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCCCCEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCCCC
Confidence 456788889999998776654221110 012345566666666777888888999877766521
Q ss_pred CeeEE---EecccCCceEEEEE-c--CCCCEEEEEeCCCcEEEEECCC-------CceeEEeccCCCceEEEEEcCCCCE
Q 005096 260 CQEER---SLTGHGWDVKSVDW-H--PTKSLLVSGGKDSLVKLWDAKS-------GRELCSFHGHKNMVLCVKWNQNGNW 326 (715)
Q Consensus 260 ~~~~~---~l~~~~~~I~si~~-s--pdg~~L~sgs~Dg~I~iwDl~s-------~~~~~~~~~~~~~I~sl~~spdg~~ 326 (715)
+..+. .+. ....|.++.. . .++.+|+..+.+|.++...+.. +.....+... +.+..+....+...
T Consensus 82 G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~~~~~~~~~~ 159 (307)
T 1zi0_A 82 GRPIVNLLPLE-QDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-DELIGVDLTSGEDE 159 (307)
T ss_dssp CEEGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-CCEEEEEEECTTCE
T ss_pred CeEhhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-CEEEEEEEeCCCCE
Confidence 22111 122 3344555543 2 3456888999999999987642 2122223333 55555555555567
Q ss_pred EEEEECCCeEEEEECCCC---------eEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCC---c---eE
Q 005096 327 VLTASKDQIIKLYDIRAM---------KELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHET---P---QV 391 (715)
Q Consensus 327 Lasgs~dg~I~iwDl~t~---------~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~---~---~~ 391 (715)
|+..+.+|.+..++...- .....+. ....|.++.... ++..|++.+..|.++..++..-. . -.
T Consensus 160 i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~-~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~kG~ 237 (307)
T 1zi0_A 160 VMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLG-EGDKVVSLIVPR-GDGAILTATQNGYGKRTAVAEYPTKSRATKGV 237 (307)
T ss_dssp EEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEECCC-SSCEEEEEETTSEEEEECGGGSCCCCTTSCCE
T ss_pred EEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeC-CCCEEEEEEEec-CCCEEEEEEcCCceEEEEHHHhccCCCCCCCE
Confidence 888888998888876432 2222232 334566665543 45678888999999888763211 0 01
Q ss_pred EE--eeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCC
Q 005096 392 EI--HNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNR 429 (715)
Q Consensus 392 ~~--~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~ 429 (715)
.. +....+.+..+....+...|+..+.+|.+.-++++.
T Consensus 238 ~~~~~~~~~~~lv~~~~v~~~~~l~~~t~~g~~ir~~~~~ 277 (307)
T 1zi0_A 238 ISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSE 277 (307)
T ss_dssp ESSCCCTTTCSEEEEEEECTTCEEEEEESSCCEEEEEGGG
T ss_pred EeeEecCCCCeEEEEEEeCCCceEEEEcCCCcEEEEeccc
Confidence 11 111224555554444455667777788877777654
|
| >3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A | Back alignment and structure |
|---|
Probab=96.10 E-value=0.78 Score=50.69 Aligned_cols=228 Identities=10% Similarity=0.062 Sum_probs=130.0
Q ss_pred EEEEeCCCcEEEEeCCCCceeeeecCC-------------------------CCCe--EEEEEe---cCCCEEEEEEC-C
Q 005096 201 MVSGDDGGAIKYWQNNMNNVKANKSAH-------------------------KESV--RDLSFC---RTDLKFCSCSD-D 249 (715)
Q Consensus 201 L~tgs~dg~I~iwd~~~~~~~~~~~~h-------------------------~~~I--~~l~~s---pd~~~Las~s~-D 249 (715)
|.+|+..|.|+|+-+-+.+++..+-.. .+.. -.+++. -||++|+.-.. +
T Consensus 73 f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdkan 152 (638)
T 3sbq_A 73 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDKAN 152 (638)
T ss_dssp EEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEETTT
T ss_pred EeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecCCC
Confidence 467788888998887777665554110 1111 123332 25677777664 6
Q ss_pred CcEEEEECCCCeeEEEecc-cCCceEEEEEc--CCCCEEEEEeC-------CCcE---------EE---EECCCCceeEE
Q 005096 250 TTVKVWDFARCQEERSLTG-HGWDVKSVDWH--PTKSLLVSGGK-------DSLV---------KL---WDAKSGRELCS 307 (715)
Q Consensus 250 g~V~iwdl~~~~~~~~l~~-~~~~I~si~~s--pdg~~L~sgs~-------Dg~I---------~i---wDl~s~~~~~~ 307 (715)
..|...+++..++...+.. ....+..++|- |+..+++++++ ||.. .+ .|..+.+....
T Consensus 153 ~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~iD~~tm~v~~Q 232 (638)
T 3sbq_A 153 SRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYNAIDAETMEMAFQ 232 (638)
T ss_dssp TEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEEEEETTTCSEEEE
T ss_pred cceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEEEEcCCccEEEEE
Confidence 6788889988877665543 34567888886 57778888765 2221 11 12222222222
Q ss_pred eccCCCceEEEEEcCCCCEEEEEECCC---------------eEEEEECCC-------C--e-----EEEEeec------
Q 005096 308 FHGHKNMVLCVKWNQNGNWVLTASKDQ---------------IIKLYDIRA-------M--K-----ELESFRG------ 352 (715)
Q Consensus 308 ~~~~~~~I~sl~~spdg~~Lasgs~dg---------------~I~iwDl~t-------~--~-----~~~~~~~------ 352 (715)
+. -......+....+++|.++.|.+. .|.++|+.. + + -+..+.+
T Consensus 233 v~-v~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv~ViD~~~~~~~ 311 (638)
T 3sbq_A 233 VI-VDGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKTPVLDGRKKDGK 311 (638)
T ss_dssp EE-ESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSCBTTB
T ss_pred EE-cCCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCeeEEcccccccc
Confidence 11 012233344566777777765432 455665421 1 0 1112222
Q ss_pred ---------CCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCC-----------ceEEEeeccCCCEEEEEEcCCCCE
Q 005096 353 ---------HRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHET-----------PQVEIHNVHDNTVWDLAWHPIGYL 412 (715)
Q Consensus 353 ---------h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~-----------~~~~~~~~h~~~V~~l~~spdg~~ 412 (715)
.......+.++|++..+++++-.+.+|.++|++.-. ..+.....-.......+|..+|..
T Consensus 312 ~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G~a 391 (638)
T 3sbq_A 312 DSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRGNA 391 (638)
T ss_dssp CCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSSEE
T ss_pred CCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCCce
Confidence 123345678899444445555567899999987411 111111112345678999999966
Q ss_pred EEEEECCCeEEEEecCC
Q 005096 413 LCSGSNDHTTKFWCRNR 429 (715)
Q Consensus 413 L~sgs~Dg~I~iWdl~~ 429 (715)
..|...|..|.-|+++.
T Consensus 392 YTtlfidSqvvkWni~~ 408 (638)
T 3sbq_A 392 YTTLFIDSQVVKWNMEE 408 (638)
T ss_dssp EEEETTTTEEEEEEHHH
T ss_pred EeeeeecceEEEEeccH
Confidence 66777899999999964
|
| >3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.07 E-value=1.9 Score=45.78 Aligned_cols=225 Identities=13% Similarity=0.165 Sum_probs=124.4
Q ss_pred CCEEEEEeCCCeEEEEeCCCC--------c---eEEEEec-cCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc----
Q 005096 156 GRRLITGSQSGEFTLWNGQSF--------N---FEMILQA-HDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNN---- 219 (715)
Q Consensus 156 g~~Latgs~dg~I~Iwd~~~~--------~---~~~~l~~-h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~---- 219 (715)
....+.-..||+|+.|-.... + ....+.. ....+..++++......+.-..||.|+.|-.+...
T Consensus 62 ~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~ 141 (389)
T 3kci_A 62 EQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGH 141 (389)
T ss_dssp TTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCS
T ss_pred CCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCC
Confidence 345666677888888853221 1 1112221 23346666777666777777889999999543210
Q ss_pred -------eeeeecC-CCCCeEEEEEecCCCEEEEEECCCcEEEEECCCC----------e-eEEEecc-cCCceEEEEEc
Q 005096 220 -------VKANKSA-HKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARC----------Q-EERSLTG-HGWDVKSVDWH 279 (715)
Q Consensus 220 -------~~~~~~~-h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~----------~-~~~~l~~-~~~~I~si~~s 279 (715)
....+.. ....|..|+. ...+.++...||.|+.|-.... . ....+.. ....|..|+..
T Consensus 142 g~~~~~~~p~~v~~l~~~~i~~va~--G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G 219 (389)
T 3kci_A 142 GNRSPCDRPRVIESLRGIEVVDVAA--GGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACG 219 (389)
T ss_dssp SSCCCEEEEEECGGGTTSCEEEEEE--CSSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEEC
T ss_pred CCCccCcCCeEecccCCCeEEEEEe--CcCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEc
Confidence 1111111 1224555554 4556677788999999975321 0 1111111 23457777765
Q ss_pred CCCCEEEEEeCCCcEEEEECCCC-c----------eeEEecc-CCCceEEEEEcCCCCEEEEEECCCeEEEEECCCC---
Q 005096 280 PTKSLLVSGGKDSLVKLWDAKSG-R----------ELCSFHG-HKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAM--- 344 (715)
Q Consensus 280 pdg~~L~sgs~Dg~I~iwDl~s~-~----------~~~~~~~-~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~--- 344 (715)
......++...|+.|+.|-.... + ....+.. ....|..|+.. ..+.++-..||.|+.|-....
T Consensus 220 ~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G--~~hs~alt~~G~v~~wG~n~~GqL 297 (389)
T 3kci_A 220 SGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECG--SQFSVALTKSGAVYTWGKGDYHRL 297 (389)
T ss_dssp CSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEE--TTEEEEEETTSCEEEEECCGGGTT
T ss_pred CCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCC--CCEEEEEeCCCeEEEEeCCCCCCC
Confidence 43456666778999999964321 1 1111221 12246665543 344555678999999965321
Q ss_pred --------eEEEEeec-CCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCC
Q 005096 345 --------KELESFRG-HRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHE 387 (715)
Q Consensus 345 --------~~~~~~~~-h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~ 387 (715)
.....+.. ....|..|+. +....++...||.|+.|-.+..
T Consensus 298 G~g~~~~~~~P~~v~~l~~~~v~~ia~---G~~h~~al~~~G~v~~wG~n~~ 346 (389)
T 3kci_A 298 GHGSDDHVRRPRQVQGLQGKKVIAIAT---GSLHCVCCTEDGEVYTWGDNDE 346 (389)
T ss_dssp CSSSCCCEEEEEECGGGTTCCEEEEEE---CSSEEEEEETTCCEEEEECCTT
T ss_pred CCCCCccccCCeEeccCCCCCEEEEEe---ccCeEEEECCCCCEEEeeCCCC
Confidence 11112221 2345666665 5566666788999999976543
|
| >4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi} | Back alignment and structure |
|---|
Probab=96.01 E-value=0.82 Score=52.88 Aligned_cols=235 Identities=10% Similarity=0.082 Sum_probs=125.5
Q ss_pred cEEEEE-EcCCCCEEEEEeC-C----CeEEEEeCCCCceEEE-Ee-ccCC------CEEEEEEcCCCCEEEEEe------
Q 005096 146 SINRVL-WTPTGRRLITGSQ-S----GEFTLWNGQSFNFEMI-LQ-AHDH------AIRSMVWSHNDNWMVSGD------ 205 (715)
Q Consensus 146 ~I~~l~-~spdg~~Latgs~-d----g~I~Iwd~~~~~~~~~-l~-~h~~------~V~~l~~spdg~~L~tgs------ 205 (715)
....+. +++|+++++.+-+ . .+|+++|+.+++.+.. +. .-+. ....++|. |++.++.+.
T Consensus 130 ~~~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~-d~~~~~~~~~~~~~~ 208 (711)
T 4hvt_A 130 AYRGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWI-NKDTIIFNLVLHKNE 208 (711)
T ss_dssp EEEEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEE-ETTEEEECCCCSTTC
T ss_pred EEeceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEE-CCCEEEEEeCCCCCC
Confidence 345555 8899998876532 2 3699999999877631 11 0000 11344887 444444432
Q ss_pred -----CCCcEEEEeCCCC--ceeeeecCCCCCe-EEEEEecCCC-----EEEEEECC---CcEEEEECCC--CeeEEEec
Q 005096 206 -----DGGAIKYWQNNMN--NVKANKSAHKESV-RDLSFCRTDL-----KFCSCSDD---TTVKVWDFAR--CQEERSLT 267 (715)
Q Consensus 206 -----~dg~I~iwd~~~~--~~~~~~~~h~~~I-~~l~~spd~~-----~Las~s~D---g~V~iwdl~~--~~~~~~l~ 267 (715)
....|+.|.+-+. +-...+......+ .....+.++. .+++.+.+ ..+++.|... ++ ...+.
T Consensus 209 ~~~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~l~ 287 (711)
T 4hvt_A 209 ITSSLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLK-LQKIN 287 (711)
T ss_dssp BCTTSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCE-EEECC
T ss_pred cCcCCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCc-ceEee
Confidence 1246888887654 2223333333332 3344555655 24443322 4566667653 33 22232
Q ss_pred ccCCceEEEEEcCCCCEEEEE----------eCCCcEEEEECCCC-------ceeEE-e-ccCCCceEEEEEcCCCCEEE
Q 005096 268 GHGWDVKSVDWHPTKSLLVSG----------GKDSLVKLWDAKSG-------RELCS-F-HGHKNMVLCVKWNQNGNWVL 328 (715)
Q Consensus 268 ~~~~~I~si~~spdg~~L~sg----------s~Dg~I~iwDl~s~-------~~~~~-~-~~~~~~I~sl~~spdg~~La 328 (715)
.... . .+..+.++.+++.. ...+.|.+.|+.+. +.... + ......+..+.|..+ .+++
T Consensus 288 ~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~ 364 (711)
T 4hvt_A 288 MPSD-A-TLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVFL 364 (711)
T ss_dssp SCTT-C-EEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEEE
T ss_pred cCCc-c-eEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEEE
Confidence 2221 1 12233345544432 23567889998763 22222 3 223456788888865 5666
Q ss_pred EEECCC--eEEEEECCCCe-EEEE-eecC-CCCeEEEEEccCCCCEEEEEeCC---CcEEEEEcC
Q 005096 329 TASKDQ--IIKLYDIRAMK-ELES-FRGH-RKDVTALAWHPFHEEYFVSGSLD---GSIFHWLVG 385 (715)
Q Consensus 329 sgs~dg--~I~iwDl~t~~-~~~~-~~~h-~~~V~~l~~sp~~~~~l~sgs~D---G~I~iwd~~ 385 (715)
+...++ .|.++|+.+++ .+.. +... ...+..+.+.++++.++++.+.. +.+..+|+.
T Consensus 365 ~~~~~~~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 365 ATYDNVVAKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT 429 (711)
T ss_dssp EEEETTEEEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred EEEECCEEEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence 776676 46777776665 2333 3222 34566666666556677666543 467777775
|
| >3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=95.78 E-value=2.6 Score=45.11 Aligned_cols=228 Identities=7% Similarity=0.037 Sum_probs=121.6
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC-------------ceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEE
Q 005096 146 SINRVLWTPTGRRLITGSQSGEFTLWNGQSF-------------NFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKY 212 (715)
Q Consensus 146 ~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~-------------~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~i 212 (715)
.|..|+.. +.+.+.-..||.|+.|-.... .....+. ....|..|+.. ..+.+.-..||.|+.
T Consensus 76 ~v~~va~G--~~h~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~-~~~~i~~va~G--~~hs~al~~~G~v~~ 150 (423)
T 3mvd_K 76 DAVDISAG--GMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGSESKPDLID-LPGKALCISAG--DSHSACLLEDGRVFA 150 (423)
T ss_dssp SEEEEEEC--SSEEEEEETTSCEEEEECCSSSTTCSCCCSTTSSSSCEECC-CSSCEEEEEEC--SSEEEEEETTSCEEE
T ss_pred CceEEeeC--CCeEEEEeCCCeEEEeECCCCcCCCCCCcCCccccCCeEEc-CCCCEEEEEcC--cCeEEEEeCCCeEEE
Confidence 36555554 456777788899999953221 0111111 23456666654 345555578899999
Q ss_pred EeC--CC-Cce---------eeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCe-------------------
Q 005096 213 WQN--NM-NNV---------KANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQ------------------- 261 (715)
Q Consensus 213 wd~--~~-~~~---------~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~------------------- 261 (715)
|-. +. +.+ ..........|..|+. ...+.++...||.|+.|-.+..-
T Consensus 151 wG~~~n~~GqlG~~~~~~~~~p~~~~~~~~i~~va~--G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~ 228 (423)
T 3mvd_K 151 WGSFRDSHGNMGLTIDGNKRTPIDLMEGTVCCSIAS--GADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKR 228 (423)
T ss_dssp EECEECSSSEEESBTTBCEEEEEESSTTCCEEEEEE--CSSEEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCSTTTTT
T ss_pred EeCCCCCCCCcCcCCCCCCceeeEecCCCcEEEEec--CCCeEEEEecCCeEEEeeCCcCCccCCCcccccccccccccc
Confidence 975 22 211 1111122335655554 34566777889999999643211
Q ss_pred ----eEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCc-----------eeEEeccCCCceEEEEEcCCCCE
Q 005096 262 ----EERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGR-----------ELCSFHGHKNMVLCVKWNQNGNW 326 (715)
Q Consensus 262 ----~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~-----------~~~~~~~~~~~I~sl~~spdg~~ 326 (715)
...........|..|+... ...++....|+.|+.|-..... ...........|..|+.- ..+
T Consensus 229 ~~~~p~~v~~~~~~~v~~i~~g~-~~~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~~~v~~ia~G--~~h 305 (423)
T 3mvd_K 229 DLLRPTQLIITRAKPFEAIWATN-YCTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTELKDIRHIAGG--QHH 305 (423)
T ss_dssp TTSSCEEECCTTCCCEEEEEEET-TEEEEEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEECCCSEEEEEEC--SSE
T ss_pred cccCCeEEeecCCccEEEEEECC-cEEEEEECCCCeEEEEeCCCCCcCCCCCCCCceeeeeEEcCCCCeEEEEcc--cCe
Confidence 1111111223455665542 2233333578899999543211 111111113346666543 345
Q ss_pred EEEEECCCeEEEEECCCC------------eEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCC
Q 005096 327 VLTASKDQIIKLYDIRAM------------KELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGH 386 (715)
Q Consensus 327 Lasgs~dg~I~iwDl~t~------------~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~ 386 (715)
.++...||.|+.|-.... .....+......|..|+. +....++...||.|+.|=.+.
T Consensus 306 t~alt~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~~~v~~ia~---G~~hs~alt~~G~v~~wG~n~ 374 (423)
T 3mvd_K 306 TVILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLTEKIVSVGC---GEVCSYAVTIDGKLYSWGSGV 374 (423)
T ss_dssp EEEEETTCCEEEEECCGGGTTCSSSCCSCEEEEEECTTCCSCEEEEEE---ETTEEEEEETTSCEEEEECCT
T ss_pred EEEEeCCCcEEEEECCCCCCCCCCCccccccCceEeccCCCCEEEEEc---CCCeEEEEcCCCCEEEECCCC
Confidence 566678899999964321 112223333336777776 345555558899999997654
|
| >4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A | Back alignment and structure |
|---|
Probab=95.67 E-value=2.8 Score=44.70 Aligned_cols=272 Identities=11% Similarity=0.069 Sum_probs=145.4
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC-----------ceEEEEec-cCCCEEEEEEcCCCCEEEEEeCC-CcEEE
Q 005096 146 SINRVLWTPTGRRLITGSQSGEFTLWNGQSF-----------NFEMILQA-HDHAIRSMVWSHNDNWMVSGDDG-GAIKY 212 (715)
Q Consensus 146 ~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~-----------~~~~~l~~-h~~~V~~l~~spdg~~L~tgs~d-g~I~i 212 (715)
.|..|+.. ..+.++-..||+|+.|-.... .....+.. ....|..|+.. ..+.+.-..| +.|+.
T Consensus 17 ~v~~ia~G--~~hs~al~~~g~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~va~G--~~ht~al~~~gg~v~~ 92 (406)
T 4d9s_A 17 KVLIISAG--ASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCG--ADHTVAYSQSGMEVYS 92 (406)
T ss_dssp CEEEEEEC--SSEEEEEETTTEEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEEC--SSEEEEEETTTTEEEE
T ss_pred ceEEEecC--CCeEEEEEeCCEEEEEeCCCCCCCCCCCcccCcCCEEecccCCCCEEEEEeC--cceEEEEECCCCEEEE
Confidence 45555554 345566677888888853221 11122221 23457777654 2333333344 58999
Q ss_pred EeCCCC---------cee--eeec-CCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCe-----------eEEEecc-
Q 005096 213 WQNNMN---------NVK--ANKS-AHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQ-----------EERSLTG- 268 (715)
Q Consensus 213 wd~~~~---------~~~--~~~~-~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~-----------~~~~l~~- 268 (715)
|-.+.. ... ..+. .....|..|+. ...+.++.+.||.|+.|-.+..- ....+..
T Consensus 93 wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~ia~--G~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~ 170 (406)
T 4d9s_A 93 WGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIAC--GDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAF 170 (406)
T ss_dssp EECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEE--CSSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECGGG
T ss_pred EcCCCCcCCCCCCCCccccceEecccCCCCEEEEEE--ChhheEEEcCCCcEEEeCCCCCccCCCCCCCCcccceEeccc
Confidence 953321 000 1111 12235666655 45566777889999999754311 1111221
Q ss_pred cCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCce-----------eEEecc-CCCceEEEEEcCCCCEEEEEECCCeE
Q 005096 269 HGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRE-----------LCSFHG-HKNMVLCVKWNQNGNWVLTASKDQII 336 (715)
Q Consensus 269 ~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~-----------~~~~~~-~~~~I~sl~~spdg~~Lasgs~dg~I 336 (715)
....|..|+.. ....++...||.|+.|-...... ...+.. ....|..|+.. ..+.++.+.||.|
T Consensus 171 ~~~~i~~va~G--~~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va~G--~~ht~~l~~~G~v 246 (406)
T 4d9s_A 171 EGIRIKMVAAG--AEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACG--WRHTISVSYSGAL 246 (406)
T ss_dssp TTCCEEEEEEC--SSEEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCSTTCCEEEEEEC--SSEEEEEETTCCE
T ss_pred CCCcEEEEecC--CCeEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEecccCCceEEEEEEC--CCcEEEEcCCCCE
Confidence 12356777665 34556667889999996432110 111111 12346555543 3455666788999
Q ss_pred EEEECCCCe-----------EEEEee-cCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCc-----------eEEE
Q 005096 337 KLYDIRAMK-----------ELESFR-GHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETP-----------QVEI 393 (715)
Q Consensus 337 ~iwDl~t~~-----------~~~~~~-~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~-----------~~~~ 393 (715)
+.|-....- ....+. .....|..|+. +....++-..||.|+.|-.+.... ...+
T Consensus 247 ~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~v~~i~~---G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v 323 (406)
T 4d9s_A 247 YTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISG---GWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQV 323 (406)
T ss_dssp EEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEE---CSSEEEEEETTSCEEEEECCTTSTTCSSSSSCEEEEEEE
T ss_pred EEeeCCCCCCCCCCCCcCccccEEecccCCCCEEEEEe---cCCEEEEEcCCCeEEEeeCCCCCCCCCCCCCCCccCEEE
Confidence 999643211 111222 12334666665 556666678899999996543211 1112
Q ss_pred eeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCCCCC
Q 005096 394 HNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGD 432 (715)
Q Consensus 394 ~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~~ 432 (715)
.......|..++.. ....++...||.|+.|=.+..+.
T Consensus 324 ~~~~~~~v~~va~G--~~hs~alt~~G~v~~wG~n~~Gq 360 (406)
T 4d9s_A 324 RFPDDQKVVQVSCG--WRHTLAVTERNNVFAWGRGTNGQ 360 (406)
T ss_dssp CCGGGCCEEEEEEC--SSEEEEEETTSCEEEEECCTTST
T ss_pred eccCCCcEEEEEeC--CCeEEEEeCCCCEEEecCCCCCc
Confidence 21223457666654 44566677899999998766544
|
| >4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A | Back alignment and structure |
|---|
Probab=94.37 E-value=6.4 Score=41.90 Aligned_cols=233 Identities=10% Similarity=0.101 Sum_probs=124.1
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC-c----------eeeeec-CCCCCeEEEEEecCCCEEEEEECC-CcEE
Q 005096 187 HAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN-N----------VKANKS-AHKESVRDLSFCRTDLKFCSCSDD-TTVK 253 (715)
Q Consensus 187 ~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~-~----------~~~~~~-~h~~~I~~l~~spd~~~Las~s~D-g~V~ 253 (715)
..|..|+.. ..+.+.-..||.|+.|=.+.. . ....+. .....|..|+.. ..+.++...| +.|+
T Consensus 16 ~~v~~ia~G--~~hs~al~~~g~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~va~G--~~ht~al~~~gg~v~ 91 (406)
T 4d9s_A 16 RKVLIISAG--ASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCG--ADHTVAYSQSGMEVY 91 (406)
T ss_dssp CCEEEEEEC--SSEEEEEETTTEEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEEC--SSEEEEEETTTTEEE
T ss_pred cceEEEecC--CCeEEEEEeCCEEEEEeCCCCCCCCCCCcccCcCCEEecccCCCCEEEEEeC--cceEEEEECCCCEEE
Confidence 455555543 344455566788888853321 0 111111 122356666553 3444444555 4899
Q ss_pred EEECCCC--------e---eEEEecc-cCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC-c----------eeEEecc
Q 005096 254 VWDFARC--------Q---EERSLTG-HGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSG-R----------ELCSFHG 310 (715)
Q Consensus 254 iwdl~~~--------~---~~~~l~~-~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~-~----------~~~~~~~ 310 (715)
.|-.+.. . ....+.. ....|..|+.. ....++...||.|+.|-.... + ....+..
T Consensus 92 ~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~ia~G--~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~ 169 (406)
T 4d9s_A 92 SWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACG--DSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQA 169 (406)
T ss_dssp EEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEEC--SSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECGG
T ss_pred EEcCCCCcCCCCCCCCccccceEecccCCCCEEEEEEC--hhheEEEcCCCcEEEeCCCCCccCCCCCCCCcccceEecc
Confidence 9964321 0 1111111 22357777765 445566678999999965431 1 0111211
Q ss_pred -CCCceEEEEEcCCCCEEEEEECCCeEEEEECCCC----------eE-EEEee-cCCCCeEEEEEccCCCCEEEEEeCCC
Q 005096 311 -HKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAM----------KE-LESFR-GHRKDVTALAWHPFHEEYFVSGSLDG 377 (715)
Q Consensus 311 -~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~----------~~-~~~~~-~h~~~V~~l~~sp~~~~~l~sgs~DG 377 (715)
....|..|+.. ..+.++...||.|+.|-.... .. ...+. .....|..|+. +....++.+.||
T Consensus 170 ~~~~~i~~va~G--~~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va~---G~~ht~~l~~~G 244 (406)
T 4d9s_A 170 FEGIRIKMVAAG--AEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVAC---GWRHTISVSYSG 244 (406)
T ss_dssp GTTCCEEEEEEC--SSEEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCSTTCCEEEEEE---CSSEEEEEETTC
T ss_pred cCCCcEEEEecC--CCeEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEecccCCceEEEEEE---CCCcEEEEcCCC
Confidence 12246666543 445666678999999964321 11 11111 12245666665 556667778899
Q ss_pred cEEEEEcCCCCce-----------EEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCCCCC
Q 005096 378 SIFHWLVGHETPQ-----------VEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGD 432 (715)
Q Consensus 378 ~I~iwd~~~~~~~-----------~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~~ 432 (715)
.|+.|-.+....+ ..+.......|..|+.. ....+....||.|+.|-.+..+.
T Consensus 245 ~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~v~~i~~G--~~hs~alt~~G~v~~wG~n~~Gq 308 (406)
T 4d9s_A 245 ALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGG--WRHTMALTSDGKLYGWGWNKFGQ 308 (406)
T ss_dssp CEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEEC--SSEEEEEETTSCEEEEECCTTST
T ss_pred CEEEeeCCCCCCCCCCCCcCccccEEecccCCCCEEEEEec--CCEEEEEcCCCeEEEeeCCCCCC
Confidence 9999975432211 11111122346666654 44566667899999998776554
|
| >1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A* | Back alignment and structure |
|---|
Probab=94.36 E-value=6.4 Score=46.01 Aligned_cols=145 Identities=11% Similarity=0.144 Sum_probs=74.3
Q ss_pred CccEEEEEEcCC-CCEEEEEeCCCeEEEEeCCCCceEEEEecc-------CCCEEEEEEcCCC-CEEEEEeCCCc----E
Q 005096 144 RCSINRVLWTPT-GRRLITGSQSGEFTLWNGQSFNFEMILQAH-------DHAIRSMVWSHND-NWMVSGDDGGA----I 210 (715)
Q Consensus 144 ~~~I~~l~~spd-g~~Latgs~dg~I~Iwd~~~~~~~~~l~~h-------~~~V~~l~~spdg-~~L~tgs~dg~----I 210 (715)
...|.+|+++|+ ...+++++..+.|...+-. ++.-..+..+ ...|.+|++.+.. +.++++..+.. -
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~Dg-G~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~ 92 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWDAG-TSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWA 92 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEETT-TTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCC
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEecCC-CCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCccc
Confidence 468999999986 3567777777777666522 2222222221 2469999998743 44544432211 3
Q ss_pred EEEe-CCCCceeeeecC---------CCCCeEEEEEecCC-CEEEEEECCCcEEEEEC-CCCeeEEEecc------cCCc
Q 005096 211 KYWQ-NNMNNVKANKSA---------HKESVRDLSFCRTD-LKFCSCSDDTTVKVWDF-ARCQEERSLTG------HGWD 272 (715)
Q Consensus 211 ~iwd-~~~~~~~~~~~~---------h~~~I~~l~~spd~-~~Las~s~Dg~V~iwdl-~~~~~~~~l~~------~~~~ 272 (715)
.||. .+.++.-..+.. ....+..|++++.+ +.++.+...+.| |.. +.++.-..+.. ....
T Consensus 93 ~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl--~~S~DgG~TW~~~~~~~~~~~~~~~ 170 (789)
T 1sqj_A 93 AFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGI--WKSSDRAKTWTNVTSIPDAFTNGIG 170 (789)
T ss_dssp EEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCE--EEESSTTSSCEEETTSCCCCSTTTC
T ss_pred EEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCE--EEECCCCcccCCCccCccccCCCCC
Confidence 3443 333332222211 01135567887643 455555534433 322 22222222221 1245
Q ss_pred eEEEEEcCC-CCEEEEEeCC
Q 005096 273 VKSVDWHPT-KSLLVSGGKD 291 (715)
Q Consensus 273 I~si~~spd-g~~L~sgs~D 291 (715)
+..|.+++. .+.|+++..+
T Consensus 171 ~~~i~~~p~~~~~~~~~~~~ 190 (789)
T 1sqj_A 171 YTSVIFDPERNGTIYASATA 190 (789)
T ss_dssp EEEEEECTTSTTCEEEEESS
T ss_pred eEEEEECCCCCCEEEEEEcC
Confidence 788999874 4456666554
|
| >3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A* | Back alignment and structure |
|---|
Probab=94.13 E-value=6.9 Score=41.36 Aligned_cols=167 Identities=11% Similarity=0.086 Sum_probs=95.7
Q ss_pred cEEEEECCCC--eeEEEecc------cCCceEEEEEc---CC----CCEEEEEe-CCCcEEEEECCCCceeEEecc----
Q 005096 251 TVKVWDFARC--QEERSLTG------HGWDVKSVDWH---PT----KSLLVSGG-KDSLVKLWDAKSGRELCSFHG---- 310 (715)
Q Consensus 251 ~V~iwdl~~~--~~~~~l~~------~~~~I~si~~s---pd----g~~L~sgs-~Dg~I~iwDl~s~~~~~~~~~---- 310 (715)
+|.+||+.+. +.++.+.- ....+..|.++ ++ +.+++.+. .+.-|.+||+++++..+.+..
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p 203 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA 203 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence 5677788777 66666542 23457778877 22 23444443 456799999998876555420
Q ss_pred C--------------CCceEEEEEcCC----CCEEEEEECCC-eEEEEE---CCCC---eEEEEeecC--CCCeEEEEEc
Q 005096 311 H--------------KNMVLCVKWNQN----GNWVLTASKDQ-IIKLYD---IRAM---KELESFRGH--RKDVTALAWH 363 (715)
Q Consensus 311 ~--------------~~~I~sl~~spd----g~~Lasgs~dg-~I~iwD---l~t~---~~~~~~~~h--~~~V~~l~~s 363 (715)
. ...|..|+++++ +++|+.....+ .+.-.. +++. ..+..+-.. ......+++.
T Consensus 204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D 283 (381)
T 3q6k_A 204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAYD 283 (381)
T ss_dssp CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCSEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEEC
T ss_pred ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCCcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEEe
Confidence 0 235788999997 78888777555 233222 1221 112222111 1334455665
Q ss_pred cCCCCEEEEEeCCCcEEEEEcCC-CC--ceEEEe-ec-cCCCEEEEEEcCCCCEEEEEE
Q 005096 364 PFHEEYFVSGSLDGSIFHWLVGH-ET--PQVEIH-NV-HDNTVWDLAWHPIGYLLCSGS 417 (715)
Q Consensus 364 p~~~~~l~sgs~DG~I~iwd~~~-~~--~~~~~~-~~-h~~~V~~l~~spdg~~L~sgs 417 (715)
+.++.++++--....|..|+..+ .. ....++ .. .-..+..+.+..++.+.++.+
T Consensus 284 ~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~sn 342 (381)
T 3q6k_A 284 PKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMSN 342 (381)
T ss_dssp TTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEEEC
T ss_pred CCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEEEEC
Confidence 33677788878888999999876 22 122222 11 122467777766665555443
|
| >3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.77 E-value=9.2 Score=41.58 Aligned_cols=191 Identities=13% Similarity=0.088 Sum_probs=104.6
Q ss_pred CCeEEEEEecCCCEEEEEECCCcEEEEECC---CCee------------EEEecc-cCCceEEEEEcCCCCEEEEEeCCC
Q 005096 229 ESVRDLSFCRTDLKFCSCSDDTTVKVWDFA---RCQE------------ERSLTG-HGWDVKSVDWHPTKSLLVSGGKDS 292 (715)
Q Consensus 229 ~~I~~l~~spd~~~Las~s~Dg~V~iwdl~---~~~~------------~~~l~~-~~~~I~si~~spdg~~L~sgs~Dg 292 (715)
..|..|+. .....++.+.||.|+.|-.. .+.. ...+.. ....|..|+.. ....++...||
T Consensus 148 ~~i~~va~--G~~hs~alt~~G~vy~wG~n~~~~GqLG~~~~~~~~~~~P~~v~~l~~~~i~~va~G--~~hs~alt~~G 223 (473)
T 3of7_A 148 HKVVQLAA--TDNMSCALFSNGEVYAWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSKYNIVQLAPG--KDHILFLDEEG 223 (473)
T ss_dssp CCEEEEEE--CSSEEEEEETTSCEEEEECEEETTEEEESBTTTBSCEEEEEECCCCCSSCEEEEEEC--SSEEEEEETTS
T ss_pred CcEEEEEc--cCCEEEEEeCCCeEEEeeCCcCCCCccCCCCCCCccccCcEEccccCCCCEEEEEec--CCeEEEEeCCC
Confidence 45555554 34566667889999999751 1110 111111 12247777765 44566667889
Q ss_pred cEEEEECCCCcee---------------EEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCC------------e
Q 005096 293 LVKLWDAKSGREL---------------CSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAM------------K 345 (715)
Q Consensus 293 ~I~iwDl~s~~~~---------------~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~------------~ 345 (715)
.|+.|-......+ ..+ ....|..|+.. ....++.+.+|.|+.|-.... .
T Consensus 224 ~v~~wG~n~~GqLG~~~~~~~~~~~~~p~~~--~~~~v~~Ia~G--~~hs~alt~~G~v~~wG~n~~GqlG~~~~~~~~~ 299 (473)
T 3of7_A 224 MVFAWGNGQQNQLGRKVMERFRLKTLDPRPF--GLRHVKYIASG--ENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGA 299 (473)
T ss_dssp CEEEEECCTTSTTSSCCCGGGTTTTCSCEEC--SCCSEEEEEEC--SSEEEEEETTSCEEEEEECTTSTTCCCSCCCTTC
T ss_pred eEEEEeCCCCCCCCCCccccccccccCceec--CCcceEEEecC--CCeEEEEecCCCEEEeCCCCCCCcCCCCcccCCc
Confidence 9999965431110 111 11346666543 445566667889999864321 1
Q ss_pred EE---EEeec-CCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCce---------------------EEE--eeccC
Q 005096 346 EL---ESFRG-HRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQ---------------------VEI--HNVHD 398 (715)
Q Consensus 346 ~~---~~~~~-h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~---------------------~~~--~~~h~ 398 (715)
.+ ..+.. ....|..|+. +....++...||.|+.|-.+....+ ... .....
T Consensus 300 ~~~~P~~v~~~~~~~i~~ia~---G~~hs~~lt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~ 376 (473)
T 3of7_A 300 LVTKPKRLALPDNVVIRSIAA---GEHHSLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLNNV 376 (473)
T ss_dssp EEEEEEECCCCTTCCEEEEEE---CSSEEEEEETTSCEEEEEECTTCTTCCCGGGCCTTCEECTTSCEEEEEEEEECCSS
T ss_pred eeeccccccccCCccEEEEEe---CCCeEEEEeCCCeEEEEECCCCCccCCCccccccccccccCCceeeeccCcccCCC
Confidence 11 11111 2245666665 4556666688999999965432111 001 10011
Q ss_pred CCEEEEEEcCCCCEEEEEECCCeEEEEecCCCCC
Q 005096 399 NTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGD 432 (715)
Q Consensus 399 ~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~~ 432 (715)
..|..|+.. ....++...||.|+.|=.+..+.
T Consensus 377 ~~v~~Ia~G--~~hs~al~~~G~vy~wG~n~~Gq 408 (473)
T 3of7_A 377 PKFKSVAAG--SHHSVAVAQNGIAYSWGFGETYA 408 (473)
T ss_dssp CCEEEEEEC--SSEEEEEETTSCEEEEECCTTCT
T ss_pred CceEEEEeC--CCeEEEEeCCCcEEEeeCCCCCC
Confidence 156666654 44566668899999998776544
|
| >3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A* | Back alignment and structure |
|---|
Probab=93.39 E-value=9.2 Score=40.37 Aligned_cols=187 Identities=10% Similarity=0.084 Sum_probs=109.9
Q ss_pred CccEEEEEEcCCCCEEEE--EeC-------------CCeEEEEeCCCC--ceEEEEecc------CCCEEEEEEc-C--C
Q 005096 144 RCSINRVLWTPTGRRLIT--GSQ-------------SGEFTLWNGQSF--NFEMILQAH------DHAIRSMVWS-H--N 197 (715)
Q Consensus 144 ~~~I~~l~~spdg~~Lat--gs~-------------dg~I~Iwd~~~~--~~~~~l~~h------~~~V~~l~~s-p--d 197 (715)
--.|..+....++++-+. |.. .-+|.+||+.+. ++++++... ...+..+++. . +
T Consensus 86 lvsV~~v~iD~~~rLWVLDtG~~~~~~~~~~~~~~~~pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~ 165 (381)
T 3q6k_A 86 LTSIYQPVIDDCRRLWVVDIGSVEYRSRGAKDYPSHRPAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPK 165 (381)
T ss_dssp SSCEEEEEECTTCEEEEEECSSCSSCSTTGGGSCCCCCEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTT
T ss_pred eEEeeEEEEcCCCcEEEEeCCCcCcCCCccccCCCCCceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCC
Confidence 346778888777754332 211 125889999999 888887653 3457888887 2 1
Q ss_pred ----CCEEEEEe-CCCcEEEEeCCCCceeeeec----CC--------------CCCeEEEEEecC----CCEEEEEECCC
Q 005096 198 ----DNWMVSGD-DGGAIKYWQNNMNNVKANKS----AH--------------KESVRDLSFCRT----DLKFCSCSDDT 250 (715)
Q Consensus 198 ----g~~L~tgs-~dg~I~iwd~~~~~~~~~~~----~h--------------~~~I~~l~~spd----~~~Las~s~Dg 250 (715)
+.+++.++ .+..|.|+|+.+++..+.+. .. ...|..|+++++ ++.|+.....+
T Consensus 166 ~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss 245 (381)
T 3q6k_A 166 GDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSA 245 (381)
T ss_dssp TTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSCCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSC
T ss_pred CCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCccccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCC
Confidence 34554444 46789999999887655442 00 246788888887 66776665544
Q ss_pred -cEEEEEC---CCC---eeEEEecccC--CceEEEEEc-CCCCEEEEEeCCCcEEEEECCC-C---ceeEEe--ccCCCc
Q 005096 251 -TVKVWDF---ARC---QEERSLTGHG--WDVKSVDWH-PTKSLLVSGGKDSLVKLWDAKS-G---RELCSF--HGHKNM 314 (715)
Q Consensus 251 -~V~iwdl---~~~---~~~~~l~~~~--~~I~si~~s-pdg~~L~sgs~Dg~I~iwDl~s-~---~~~~~~--~~~~~~ 314 (715)
.++-... ++. ..+..+-... ..-..++++ .+|.++++--.++.|..|+.++ . +....+ ...-.+
T Consensus 246 ~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~ 325 (381)
T 3q6k_A 246 IKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVF 325 (381)
T ss_dssp SEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCS
T ss_pred CcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccc
Confidence 3333321 111 1122221111 233456675 6777777777888999999875 1 122222 122335
Q ss_pred eEEEEEcCCCCEEEEE
Q 005096 315 VLCVKWNQNGNWVLTA 330 (715)
Q Consensus 315 I~sl~~spdg~~Lasg 330 (715)
...+++..++.+.++.
T Consensus 326 pd~~~i~~~g~Lwv~s 341 (381)
T 3q6k_A 326 GTDISVDSKGGLWFMS 341 (381)
T ss_dssp EEEEEECTTSCEEEEE
T ss_pred cCeEEECCCCeEEEEE
Confidence 6777777666544444
|
| >4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B | Back alignment and structure |
|---|
Probab=93.20 E-value=8.7 Score=45.90 Aligned_cols=71 Identities=13% Similarity=0.145 Sum_probs=47.6
Q ss_pred ceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCC-----CCeEEEEEccCCCCEEEEE---eCCCcEEEEEc
Q 005096 314 MVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHR-----KDVTALAWHPFHEEYFVSG---SLDGSIFHWLV 384 (715)
Q Consensus 314 ~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~-----~~V~~l~~sp~~~~~l~sg---s~DG~I~iwd~ 384 (715)
.+.+++...+..+|++-+.|+++|||++.+++++.+..... .........+..+.+|++. ..+|.+++|.+
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~dL~~~~~~~~~~~~~~~~~~~~~~i~v~~s~~~~g~F~~~~~ 315 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIELSQTILPLQSFPYLTSDHTTNSFIALYYPDNSHGSFSIYKL 315 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEECCCCCCCSCCCCCEEECSSSTTEEEEEECCSSSCEEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeecccccCCccccccccccCCCcccEEEEEEcCCCCcEEEEEEE
Confidence 46778888888999999999999999999999988754211 1122233344344444433 24567777765
|
| >1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B | Back alignment and structure |
|---|
Probab=92.98 E-value=11 Score=40.07 Aligned_cols=231 Identities=11% Similarity=0.011 Sum_probs=126.3
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc------------eeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEE
Q 005096 187 HAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNN------------VKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKV 254 (715)
Q Consensus 187 ~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~------------~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~i 254 (715)
..|..|+.. ..+.+.-..||.|+.|-.+... ..-........|..|+. ...+.++.+.||.|+.
T Consensus 59 ~~i~~va~G--~~hs~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~l~~~i~~va~--G~~hs~alt~~G~v~~ 134 (413)
T 1a12_A 59 EDVVQAEAG--GMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQEKVVQVSA--GDSHTAALTDDGRVFL 134 (413)
T ss_dssp SCEEEEEEC--SSEEEEEETTSCEEEEECCTTSTTCSCCCSTTGGGSCEECCCCSCEEEEEE--CSSEEEEEETTSCEEE
T ss_pred CCeEEEEeC--CCeEEEEcCCCCEEEEECCCCCCCCCCCCCCccccCCeEecCCCcEEEEec--CCCeEEEEcCCCcEEE
Confidence 556666654 3455556688999999644310 00000112335655554 3456677788999999
Q ss_pred EEC--CCCee------------EEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC-ce---------------
Q 005096 255 WDF--ARCQE------------ERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSG-RE--------------- 304 (715)
Q Consensus 255 wdl--~~~~~------------~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~-~~--------------- 304 (715)
|-. +..-. ...+ .....|..|+.. ....++...||.|+.|-.... +.
T Consensus 135 wG~~~n~~GqlG~~~~~~~~~~P~~v-~~~~~i~~ia~G--~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~ 211 (413)
T 1a12_A 135 WGSFRDNNGVIGLLEPMKKSMVPVQV-QLDVPVVKVASG--NDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQG 211 (413)
T ss_dssp EECEEETTEEEESSBBTBCEEEEEEE-CCSSCEEEEEEC--SSEEEEEETTSCEEEEECCTTSTTCSCGGGTSSSCGGGG
T ss_pred eeCCcCCCCccCcCCccccccCCEEe-cCCCCEEEEEec--CceEEEEcCCCCEEEeeCCCCCccCCCcccccccccccc
Confidence 975 21110 1111 123457677665 345556668899999965431 10
Q ss_pred ------eEEecc------CCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCe-----------EEEEeecC---CCCeE
Q 005096 305 ------LCSFHG------HKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMK-----------ELESFRGH---RKDVT 358 (715)
Q Consensus 305 ------~~~~~~------~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~-----------~~~~~~~h---~~~V~ 358 (715)
...+.. ....|..|+.. ..+.++...||.|+.|-....- ....+... ...|.
T Consensus 212 ~~~~~~P~~v~~~~~g~~~~~~i~~ia~G--~~hs~alt~~G~v~~wG~n~~gqLG~~~~~~~~~P~~v~~l~~~~~~v~ 289 (413)
T 1a12_A 212 LERLLVPKCVMLKSRGSRGHVRFQDAFCG--AYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWV 289 (413)
T ss_dssp HHHHHSCEECCCBCSSCCSBCCEEEEEEE--TTEEEEEETTCCEEEEECCTTSTTSCSSCSCEEEEEECGGGCCTTCCEE
T ss_pred ccccccCceEeeccccccCCccEEEEEeC--CCEEEEEeCCCCEEEEeCCCCcCCCCCCCCcccccEEchhccCCCceEE
Confidence 000111 12346666654 3345555688999999754311 11112211 13466
Q ss_pred EEEEccCCCCEEEEEeCCCcEEEEEcCCC--------CceE---EEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEec
Q 005096 359 ALAWHPFHEEYFVSGSLDGSIFHWLVGHE--------TPQV---EIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCR 427 (715)
Q Consensus 359 ~l~~sp~~~~~l~sgs~DG~I~iwd~~~~--------~~~~---~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl 427 (715)
.|+. +....++-..||.|+.|-.+.. .... .... ....|..|+.. ....+....||.|+.|-.
T Consensus 290 ~ia~---G~~hs~al~~~G~v~~wG~n~~GqLG~g~~~~~~~~P~~v~-~l~~v~~v~~G--~~hs~alt~~G~v~~wG~ 363 (413)
T 1a12_A 290 GFSG---GQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLIS-RLPAVSSVACG--ASVGYAVTKDGRVFAWGM 363 (413)
T ss_dssp EEEE---CSSEEEEEETTSCEEEEECCGGGTTCSCTTCCCEEEEEECC-SSSSEEEEEEC--SSEEEEEETTSCEEEEEC
T ss_pred EEec---ccceEEEEeCCCCEEEeeCCCCCccCCCCCCccccCCEEec-ccCceeEEEEC--cceEEEEeCCCCEEEecC
Confidence 6665 5566666778999999965321 1111 1111 12367777654 445666678999999987
Q ss_pred CCCCC
Q 005096 428 NRPGD 432 (715)
Q Consensus 428 ~~~~~ 432 (715)
+..+.
T Consensus 364 n~~gq 368 (413)
T 1a12_A 364 GTNYQ 368 (413)
T ss_dssp CTTST
T ss_pred CCCCC
Confidence 76543
|
| >4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B | Back alignment and structure |
|---|
Probab=92.93 E-value=11 Score=44.91 Aligned_cols=38 Identities=18% Similarity=0.165 Sum_probs=33.0
Q ss_pred ceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEec
Q 005096 272 DVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFH 309 (715)
Q Consensus 272 ~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~ 309 (715)
.|.+++...+..++++.+.|+++|||++.+++++.+..
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 46777888888899999999999999999999887753
|
| >1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A* | Back alignment and structure |
|---|
Probab=92.07 E-value=22 Score=41.43 Aligned_cols=146 Identities=7% Similarity=0.033 Sum_probs=75.9
Q ss_pred CCCEEEEEEcCC-CCEEEEEeCCCcEEEEeCCCCceeeeecC-------CCCCeEEEEEecCC-CEEEEEECCCc----E
Q 005096 186 DHAIRSMVWSHN-DNWMVSGDDGGAIKYWQNNMNNVKANKSA-------HKESVRDLSFCRTD-LKFCSCSDDTT----V 252 (715)
Q Consensus 186 ~~~V~~l~~spd-g~~L~tgs~dg~I~iwd~~~~~~~~~~~~-------h~~~I~~l~~spd~-~~Las~s~Dg~----V 252 (715)
.+.|.+|++++. ...++++...+.|...+- .++.-..+.. ....|.+|++.+.+ +.++++..+.. -
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~D-gG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~ 92 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWDA-GTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWA 92 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEET-TTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCC
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEecC-CCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCccc
Confidence 468999999986 356666776676655542 2332222222 12469999998743 44555543311 3
Q ss_pred EEEEC-CCCeeEEEecc---------cCCceEEEEEcCCC-CEEEEEeCCCcEEEEECCCCceeEEecc------CCCce
Q 005096 253 KVWDF-ARCQEERSLTG---------HGWDVKSVDWHPTK-SLLVSGGKDSLVKLWDAKSGRELCSFHG------HKNMV 315 (715)
Q Consensus 253 ~iwdl-~~~~~~~~l~~---------~~~~I~si~~spdg-~~L~sgs~Dg~I~iwDl~s~~~~~~~~~------~~~~I 315 (715)
.||.. +.++.-..+.. ....+..|++++.. +.++++...+.|. ...+.++.-..+.. ....+
T Consensus 93 ~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl~-~S~DgG~TW~~~~~~~~~~~~~~~~ 171 (789)
T 1sqj_A 93 AFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGIW-KSSDRAKTWTNVTSIPDAFTNGIGY 171 (789)
T ss_dssp EEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCEE-EESSTTSSCEEETTSCCCCSTTTCE
T ss_pred EEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCEE-EECCCCcccCCCccCccccCCCCCe
Confidence 34433 33332222211 01135678888753 4566665444332 22233333333321 12457
Q ss_pred EEEEEcC-CCCEEEEEECC
Q 005096 316 LCVKWNQ-NGNWVLTASKD 333 (715)
Q Consensus 316 ~sl~~sp-dg~~Lasgs~d 333 (715)
..|.+++ +.+.|+++..+
T Consensus 172 ~~i~~~p~~~~~~~~~~~~ 190 (789)
T 1sqj_A 172 TSVIFDPERNGTIYASATA 190 (789)
T ss_dssp EEEEECTTSTTCEEEEESS
T ss_pred EEEEECCCCCCEEEEEEcC
Confidence 8899987 44566666654
|
| >1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B | Back alignment and structure |
|---|
Probab=91.42 E-value=16 Score=38.65 Aligned_cols=227 Identities=8% Similarity=0.014 Sum_probs=122.4
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC------------c-eEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEE
Q 005096 145 CSINRVLWTPTGRRLITGSQSGEFTLWNGQSF------------N-FEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIK 211 (715)
Q Consensus 145 ~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~------------~-~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~ 211 (715)
..|..|+... .+.+.-..||.|+.|-.... . ....+ .....|..|+.. ..+.+.-..||.|+
T Consensus 59 ~~i~~va~G~--~hs~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v-~l~~~i~~va~G--~~hs~alt~~G~v~ 133 (413)
T 1a12_A 59 EDVVQAEAGG--MHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKV-ELQEKVVQVSAG--DSHTAALTDDGRVF 133 (413)
T ss_dssp SCEEEEEECS--SEEEEEETTSCEEEEECCTTSTTCSCCCSTTGGGSCEEC-CCCSCEEEEEEC--SSEEEEEETTSCEE
T ss_pred CCeEEEEeCC--CeEEEEcCCCCEEEEECCCCCCCCCCCCCCccccCCeEe-cCCCcEEEEecC--CCeEEEEcCCCcEE
Confidence 4577776643 35566678889999954321 0 01111 113466666653 34555567789999
Q ss_pred EEeC--CCC-ce----------eeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeE---------------
Q 005096 212 YWQN--NMN-NV----------KANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEE--------------- 263 (715)
Q Consensus 212 iwd~--~~~-~~----------~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~--------------- 263 (715)
.|-. +.. .+ .-........|..|+. -..+.++.+.||.|+.|-....-.+
T Consensus 134 ~wG~~~n~~GqlG~~~~~~~~~~P~~v~~~~~i~~ia~--G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~ 211 (413)
T 1a12_A 134 LWGSFRDNNGVIGLLEPMKKSMVPVQVQLDVPVVKVAS--GNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQG 211 (413)
T ss_dssp EEECEEETTEEEESSBBTBCEEEEEEECCSSCEEEEEE--CSSEEEEEETTSCEEEEECCTTSTTCSCGGGTSSSCGGGG
T ss_pred EeeCCcCCCCccCcCCccccccCCEEecCCCCEEEEEe--cCceEEEEcCCCCEEEeeCCCCCccCCCcccccccccccc
Confidence 9964 211 10 0011122345555554 3456667778999999976432110
Q ss_pred -------EEecc------cCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCc-----------eeEEeccCC---CceE
Q 005096 264 -------RSLTG------HGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGR-----------ELCSFHGHK---NMVL 316 (715)
Q Consensus 264 -------~~l~~------~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~-----------~~~~~~~~~---~~I~ 316 (715)
..+.. ....|..|+... ...++...||.|+.|-..... ....+.... ..|.
T Consensus 212 ~~~~~~P~~v~~~~~g~~~~~~i~~ia~G~--~hs~alt~~G~v~~wG~n~~gqLG~~~~~~~~~P~~v~~l~~~~~~v~ 289 (413)
T 1a12_A 212 LERLLVPKCVMLKSRGSRGHVRFQDAFCGA--YFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWV 289 (413)
T ss_dssp HHHHHSCEECCCBCSSCCSBCCEEEEEEET--TEEEEEETTCCEEEEECCTTSTTSCSSCSCEEEEEECGGGCCTTCCEE
T ss_pred ccccccCceEeeccccccCCccEEEEEeCC--CEEEEEeCCCCEEEEeCCCCcCCCCCCCCcccccEEchhccCCCceEE
Confidence 00110 123566666653 344455688999999654311 011121111 2366
Q ss_pred EEEEcCCCCEEEEEECCCeEEEEECCCC---------e---EEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEc
Q 005096 317 CVKWNQNGNWVLTASKDQIIKLYDIRAM---------K---ELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLV 384 (715)
Q Consensus 317 sl~~spdg~~Lasgs~dg~I~iwDl~t~---------~---~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~ 384 (715)
.|+.. ..+.++...||.|+.|-.... + ....+.. ...|..|+. +....++...||.|+.|-.
T Consensus 290 ~ia~G--~~hs~al~~~G~v~~wG~n~~GqLG~g~~~~~~~~P~~v~~-l~~v~~v~~---G~~hs~alt~~G~v~~wG~ 363 (413)
T 1a12_A 290 GFSGG--QHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISR-LPAVSSVAC---GASVGYAVTKDGRVFAWGM 363 (413)
T ss_dssp EEEEC--SSEEEEEETTSCEEEEECCGGGTTCSCTTCCCEEEEEECCS-SSSEEEEEE---CSSEEEEEETTSCEEEEEC
T ss_pred EEecc--cceEEEEeCCCCEEEeeCCCCCccCCCCCCccccCCEEecc-cCceeEEEE---CcceEEEEeCCCCEEEecC
Confidence 66543 345556668899999964321 1 1112222 226777765 5566666778999999976
Q ss_pred CC
Q 005096 385 GH 386 (715)
Q Consensus 385 ~~ 386 (715)
+.
T Consensus 364 n~ 365 (413)
T 1a12_A 364 GT 365 (413)
T ss_dssp CT
T ss_pred CC
Confidence 54
|
| >1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli} | Back alignment and structure |
|---|
Probab=90.65 E-value=14 Score=36.64 Aligned_cols=142 Identities=13% Similarity=-0.014 Sum_probs=81.6
Q ss_pred CEEEEEECCCcEEEEECCCCee-EEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEE---CCC----Ccee---EEec
Q 005096 241 LKFCSCSDDTTVKVWDFARCQE-ERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWD---AKS----GREL---CSFH 309 (715)
Q Consensus 241 ~~Las~s~Dg~V~iwdl~~~~~-~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwD---l~s----~~~~---~~~~ 309 (715)
..+++.+.+|.|+--....... ...+. ..+.+..+........|+..+..|.++-+. +.. |+.+ ..+.
T Consensus 3 ~v~v~lT~~G~iKr~~~~~~~~~~~~lk-e~D~l~~~~~~~t~~~ll~~T~~Gr~~~~~~~elp~~r~~G~~i~~~i~L~ 81 (256)
T 1zvt_A 3 PVTIVLSQMGWVRSAKGHDIDAPGLNYK-AGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLP 81 (256)
T ss_dssp EEEEEEETTSEEEEEESSCCCSTTSCCC-TTCCEEEEEEEETTSCEEEEETTSEEEEECGGGSCCSSSCCEEGGGTCCCC
T ss_pred CEEEEEeCCCEEEEeeCCcCCceeccCC-CCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCCCcCCCCeEeeeeecCC
Confidence 3466778888887766543211 11222 233444444433444566667778766654 421 2211 1122
Q ss_pred cCCCceEEEEEcCCCCEEEEEECCCeEEEEECCC-------CeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEE
Q 005096 310 GHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRA-------MKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHW 382 (715)
Q Consensus 310 ~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t-------~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iw 382 (715)
....|.++....++.+|+.++.+|.++...+.. +.....++.. ..+..+....+++..|+..+.+|.+..+
T Consensus 82 -~~e~Iv~~~~~~~~~~lll~T~~G~~Kr~~~~e~~~~~r~G~~~i~L~~~-d~lv~~~~~~~~~~~i~l~T~~G~~lrf 159 (256)
T 1zvt_A 82 -PGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPEN-AHVMPPVVIEDASDMLLAITQAGRMLMF 159 (256)
T ss_dssp -TTCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGCCCSTTCEECBCCCTT-CCBCCCEECCCTTCEEEEEETTSEEEEE
T ss_pred -CCCEEEEEEEeCCCCEEEEEeCCCeEEEeEHHHhcccCcCceEEEEECCC-CEEEEEEEecCCCCEEEEEcCCCeEEEE
Confidence 234566664444667788999999999988743 3444445433 3454444442245678888999999888
Q ss_pred EcC
Q 005096 383 LVG 385 (715)
Q Consensus 383 d~~ 385 (715)
.++
T Consensus 160 ~~~ 162 (256)
T 1zvt_A 160 PVS 162 (256)
T ss_dssp EGG
T ss_pred EHH
Confidence 774
|
| >1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli} | Back alignment and structure |
|---|
Probab=89.28 E-value=5.4 Score=39.68 Aligned_cols=143 Identities=8% Similarity=0.024 Sum_probs=83.9
Q ss_pred CEEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCC-------CeeE---EEecc
Q 005096 199 NWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFAR-------CQEE---RSLTG 268 (715)
Q Consensus 199 ~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~-------~~~~---~~l~~ 268 (715)
..+++.+.+|.|+--...............+.+..+..+.....|+..+..|.++-+...+ +..+ ..+.
T Consensus 3 ~v~v~lT~~G~iKr~~~~~~~~~~~~lke~D~l~~~~~~~t~~~ll~~T~~Gr~~~~~~~elp~~r~~G~~i~~~i~L~- 81 (256)
T 1zvt_A 3 PVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLP- 81 (256)
T ss_dssp EEEEEEETTSEEEEEESSCCCSTTSCCCTTCCEEEEEEEETTSCEEEEETTSEEEEECGGGSCCSSSCCEEGGGTCCCC-
T ss_pred CEEEEEeCCCEEEEeeCCcCCceeccCCCCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCCCcCCCCeEeeeeecCC-
Confidence 3456667778777655433211111112345566666666666788888889877765522 1111 1122
Q ss_pred cCCceEEEEEcCCCCEEEEEeCCCcEEEEECCC-------CceeEEeccCCCceEEEEEc-CCCCEEEEEECCCeEEEEE
Q 005096 269 HGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKS-------GRELCSFHGHKNMVLCVKWN-QNGNWVLTASKDQIIKLYD 340 (715)
Q Consensus 269 ~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s-------~~~~~~~~~~~~~I~sl~~s-pdg~~Lasgs~dg~I~iwD 340 (715)
....|.++....++.+|+.++.+|.++...+.. +.....++. .+.+..+... .++..|+..+.+|.+..++
T Consensus 82 ~~e~Iv~~~~~~~~~~lll~T~~G~~Kr~~~~e~~~~~r~G~~~i~L~~-~d~lv~~~~~~~~~~~i~l~T~~G~~lrf~ 160 (256)
T 1zvt_A 82 PGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPE-NAHVMPPVVIEDASDMLLAITQAGRMLMFP 160 (256)
T ss_dssp TTCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGCCCSTTCEECBCCCT-TCCBCCCEECCCTTCEEEEEETTSEEEEEE
T ss_pred CCCEEEEEEEeCCCCEEEEEeCCCeEEEeEHHHhcccCcCceEEEEECC-CCEEEEEEEecCCCCEEEEEcCCCeEEEEE
Confidence 234566665444567788899999999987632 233333443 2345444454 3456788888899888888
Q ss_pred CCC
Q 005096 341 IRA 343 (715)
Q Consensus 341 l~t 343 (715)
+..
T Consensus 161 ~~e 163 (256)
T 1zvt_A 161 VSD 163 (256)
T ss_dssp GGG
T ss_pred HHH
Confidence 754
|
| >2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A* | Back alignment and structure |
|---|
Probab=88.24 E-value=35 Score=37.71 Aligned_cols=270 Identities=9% Similarity=0.067 Sum_probs=139.4
Q ss_pred CCccEEEEEEcCCCC-EEEEEeCCCe----------------------------EEEEeCCCCceEEEEecc--CCC---
Q 005096 143 NRCSINRVLWTPTGR-RLITGSQSGE----------------------------FTLWNGQSFNFEMILQAH--DHA--- 188 (715)
Q Consensus 143 H~~~I~~l~~spdg~-~Latgs~dg~----------------------------I~Iwd~~~~~~~~~l~~h--~~~--- 188 (715)
|-..+....|.-||+ -|++.+.+|+ |.|+|-.+++.+.++... .+.
T Consensus 177 ~yt~~~V~DlDGDGkaEIvv~TadGt~dg~g~~ig~~~~dyrn~~g~il~GpEyL~vfdG~TG~~l~~~~~~p~rg~~~~ 256 (591)
T 2zux_A 177 HYTQFMVYDLDGDGKAEVAMKTADGTKDGTGKVIGNANADYRNEQGRVLSGPEYLTVFQGSTGKELVTANFEPARGNVSD 256 (591)
T ss_dssp TSCCCEEECSSSSSSCEEEEEECTTCBCTTSCBCSSTTCCCBCTTSCBCSSCCEEEEEETTTCCEEEEEECSSCCCCGGG
T ss_pred ccCceeEEEcCCCCcceEEEEccCCcccCCceEecccccccccccceeecCCcEEEEEeCCCCCEEecccCCCCCCcccc
Confidence 556688888888885 4777766665 778888888777665432 111
Q ss_pred ------------EEEEEEcCCC--CEEEEEe---CCCcEEEEeCCCCceeeeec--CCC-----------CCeEEEEEec
Q 005096 189 ------------IRSMVWSHND--NWMVSGD---DGGAIKYWQNNMNNVKANKS--AHK-----------ESVRDLSFCR 238 (715)
Q Consensus 189 ------------V~~l~~spdg--~~L~tgs---~dg~I~iwd~~~~~~~~~~~--~h~-----------~~I~~l~~sp 238 (715)
..++++. |+ -.++.+. ....|..||...+++..... ... ..+....+.-
T Consensus 257 WGD~ygnR~drf~~~vayL-DG~~Ps~v~~rGyYtr~~v~A~d~~~~~L~~~W~~d~~~~~~~~~~gqg~h~~~vaDVDg 335 (591)
T 2zux_A 257 WGDSYGNRVDRFLAGIAYL-DGQRPSLIMTRGYYAKTMLVAYNFRDGKLSKLWTLDSSKSGNEAFAGQGNHNLSIADVDG 335 (591)
T ss_dssp GTCSSSSGGGCEEEEEECT-TSSSCEEEEEECCSSSCEEEEEEEETTEEEEEEEEETTSTTCGGGSSCCCSCCEEECCSS
T ss_pred cccccccccccceeeEEEC-CCCCceEEEeccccceeEEEEEECCCCceEEEEEecCCCCCcccccccCCCCCeeEeCCC
Confidence 2333432 22 2233322 12347778877765543321 110 1233333444
Q ss_pred CCCE-EEEE----ECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCC--CEEEEEeCCC----cEEEEECCCCceeEE
Q 005096 239 TDLK-FCSC----SDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTK--SLLVSGGKDS----LVKLWDAKSGRELCS 307 (715)
Q Consensus 239 d~~~-Las~----s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg--~~L~sgs~Dg----~I~iwDl~s~~~~~~ 307 (715)
||+- |+.+ ..||++ +|... .+|...+....|.|+. ..++.+.+++ -..+.|.++++.+..
T Consensus 336 DG~dEIv~Gs~~iD~dG~~-L~st~--------~gHGDa~hv~dldP~r~GlEv~~~~E~~~~~~G~~~~dA~tG~vlw~ 406 (591)
T 2zux_A 336 DGKDEIIFGSMAVDHDGKG-MYSTG--------LGHGDALHTGDLDPGRPGLEVFQVHEDKNAKYGLSFRDAATGKILWG 406 (591)
T ss_dssp SSSCEEEETTEEECTTSCE-EEECS--------CCCCSCEEEECCCTTSSSCEEEEECCCTTSSCSEEEEETTTCCEEEE
T ss_pred CCCceEEEeeeEECCCCCE-eeeCC--------CCCCCeeEEeecCCCCCCcEEEEEecCCCCCCccEEEECCCCcEEEE
Confidence 4432 3322 223332 44432 2688888888888874 4666665542 356789999999988
Q ss_pred eccC--CCceEEEEEcCCCC--EEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEE
Q 005096 308 FHGH--KNMVLCVKWNQNGN--WVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWL 383 (715)
Q Consensus 308 ~~~~--~~~I~sl~~spdg~--~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd 383 (715)
.... .+......|.++.. -+.+ +. .||+.+ ++.+.... ....-..|-|.-+..+.|+- .+.|.-|+
T Consensus 407 ~~~~~d~Gr~~~~Didp~~pG~E~w~---~~--~l~~~~-G~~i~~~~-p~~~N~~i~WdGDl~relld---~~~i~k~~ 476 (591)
T 2zux_A 407 VYAGKDVGRGMAADIDPRYPGQEVWA---NG--SLYSAK-GVKIGSGV-PSSTNFGIWWDGDLLREQLD---SNRIDKWD 476 (591)
T ss_dssp ECCSSCCCCEEEECCCTTSSSCEEEE---TT--EEECTT-SCBCSSCC-CSCCSEEECCSSSSSCEEEE---TTEEEEEE
T ss_pred cCCCCCCCceeEEecCCCCCceEEEe---cC--ceECCC-CCEecCCC-CCCcceeEEECCCCcHhhhC---CceEEecc
Confidence 7543 33444444555422 2222 22 466654 44443221 11122346666544344443 23677787
Q ss_pred cCCCCce--EEEee------ccCCCEEEEEEcCCC-CEEEEEE-CCCeEEEEecCCCCC
Q 005096 384 VGHETPQ--VEIHN------VHDNTVWDLAWHPIG-YLLCSGS-NDHTTKFWCRNRPGD 432 (715)
Q Consensus 384 ~~~~~~~--~~~~~------~h~~~V~~l~~spdg-~~L~sgs-~Dg~I~iWdl~~~~~ 432 (715)
...+... +.+.. ....++.+..+.-|. .-|+..+ .+..|+||.......
T Consensus 477 ~~~~~~~~l~~~~g~~snngtk~~P~l~aDi~GDwREEvI~~t~D~~~LrIYtt~~pt~ 535 (591)
T 2zux_A 477 YQNGVSKNMLTASGAAANNGTKATPTLQADLLGDWREEVVWRTEDSSALRIYTTTIPTE 535 (591)
T ss_dssp TTTTEEEEEEECTTEECBSGGGCBCSEEECCSSSSSCEEEEEETTSSEEEEECCCCCCS
T ss_pred cCCCceeEEEeecccccCCCCCCCEeeEEeccccCeeEEEEEeCCCCeEEEEeCCCCCc
Confidence 6554321 11110 012233444555552 3444444 455799998865544
|
| >3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=86.57 E-value=39 Score=36.49 Aligned_cols=188 Identities=13% Similarity=0.088 Sum_probs=99.2
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEeCC---CCce------------eeeec-CCCCCeEEEEEecCCCEEEEEECCC
Q 005096 187 HAIRSMVWSHNDNWMVSGDDGGAIKYWQNN---MNNV------------KANKS-AHKESVRDLSFCRTDLKFCSCSDDT 250 (715)
Q Consensus 187 ~~V~~l~~spdg~~L~tgs~dg~I~iwd~~---~~~~------------~~~~~-~h~~~I~~l~~spd~~~Las~s~Dg 250 (715)
..|..|+.. ....++-..||.|+.|-.. .+.+ ...+. .....|..|+. ...+.++.+.+|
T Consensus 148 ~~i~~va~G--~~hs~alt~~G~vy~wG~n~~~~GqLG~~~~~~~~~~~P~~v~~l~~~~i~~va~--G~~hs~alt~~G 223 (473)
T 3of7_A 148 HKVVQLAAT--DNMSCALFSNGEVYAWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSKYNIVQLAP--GKDHILFLDEEG 223 (473)
T ss_dssp CCEEEEEEC--SSEEEEEETTSCEEEEECEEETTEEEESBTTTBSCEEEEEECCCCCSSCEEEEEE--CSSEEEEEETTS
T ss_pred CcEEEEEcc--CCEEEEEeCCCeEEEeeCCcCCCCccCCCCCCCccccCcEEccccCCCCEEEEEe--cCCeEEEEeCCC
Confidence 456666654 3445555678999999641 1110 01111 11223666555 445677778899
Q ss_pred cEEEEECCCCeeEE-------------EecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC-c-----------ee
Q 005096 251 TVKVWDFARCQEER-------------SLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSG-R-----------EL 305 (715)
Q Consensus 251 ~V~iwdl~~~~~~~-------------~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~-~-----------~~ 305 (715)
.|+.|-......+- ........|..|+.. ....++...||.|+.|-.... + .+
T Consensus 224 ~v~~wG~n~~GqLG~~~~~~~~~~~~~p~~~~~~~v~~Ia~G--~~hs~alt~~G~v~~wG~n~~GqlG~~~~~~~~~~~ 301 (473)
T 3of7_A 224 MVFAWGNGQQNQLGRKVMERFRLKTLDPRPFGLRHVKYIASG--ENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGALV 301 (473)
T ss_dssp CEEEEECCTTSTTSSCCCGGGTTTTCSCEECSCCSEEEEEEC--SSEEEEEETTSCEEEEEECTTSTTCCCSCCCTTCEE
T ss_pred eEEEEeCCCCCCCCCCccccccccccCceecCCcceEEEecC--CCeEEEEecCCCEEEeCCCCCCCcCCCCcccCCcee
Confidence 99999754321100 000011356667665 345555667899999954321 1 11
Q ss_pred ---EEecc-CCCceEEEEEcCCCCEEEEEECCCeEEEEECCCC--------------------eE--E---EEeecCCCC
Q 005096 306 ---CSFHG-HKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAM--------------------KE--L---ESFRGHRKD 356 (715)
Q Consensus 306 ---~~~~~-~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~--------------------~~--~---~~~~~h~~~ 356 (715)
..+.. ....|..|+.. ....++...||.|+.|-.... +. + ..+. ....
T Consensus 302 ~~P~~v~~~~~~~i~~ia~G--~~hs~~lt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~P~~v~-~~~~ 378 (473)
T 3of7_A 302 TKPKRLALPDNVVIRSIAAG--EHHSLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLN-NVPK 378 (473)
T ss_dssp EEEEECCCCTTCCEEEEEEC--SSEEEEEETTSCEEEEEECTTCTTCCCGGGCCTTCEECTTSCEEEEEEEEECC-SSCC
T ss_pred eccccccccCCccEEEEEeC--CCeEEEEeCCCeEEEEECCCCCccCCCccccccccccccCCceeeeccCcccC-CCCc
Confidence 11111 12346666543 334455567888888864321 00 0 1111 1125
Q ss_pred eEEEEEccCCCCEEEEEeCCCcEEEEEcCC
Q 005096 357 VTALAWHPFHEEYFVSGSLDGSIFHWLVGH 386 (715)
Q Consensus 357 V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~ 386 (715)
|..|+. +....++...||.|+.|-.+.
T Consensus 379 v~~Ia~---G~~hs~al~~~G~vy~wG~n~ 405 (473)
T 3of7_A 379 FKSVAA---GSHHSVAVAQNGIAYSWGFGE 405 (473)
T ss_dssp EEEEEE---CSSEEEEEETTSCEEEEECCT
T ss_pred eEEEEe---CCCeEEEEeCCCcEEEeeCCC
Confidence 666665 556666668899999997654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 715 | ||||
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 2e-41 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 1e-31 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 7e-20 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 3e-14 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 9e-38 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 5e-27 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 2e-26 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 2e-14 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 1e-12 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 9e-11 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 2e-07 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 4e-07 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 3e-28 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 4e-22 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 2e-16 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 7e-14 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 3e-06 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 6e-28 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 1e-27 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 3e-23 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 4e-20 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 1e-12 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 5e-09 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 5e-08 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 3e-26 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 7e-14 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 5e-13 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 8e-13 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 1e-10 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 2e-18 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 2e-17 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 2e-14 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 9e-11 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 1e-09 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 6e-18 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 2e-14 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 7e-10 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 2e-06 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 1e-17 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 1e-16 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 8e-13 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 4e-12 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 8e-12 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 1e-05 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 3e-16 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 2e-12 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 1e-08 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 2e-07 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 6e-06 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 9e-05 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 5e-15 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 4e-09 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 7e-08 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 4e-06 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 8e-06 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 9e-06 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 3e-05 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 6e-05 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 3e-14 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 1e-13 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 7e-11 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 3e-10 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 3e-08 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 5e-14 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 1e-12 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 4e-12 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 7e-11 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 1e-04 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 9e-13 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 3e-08 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 1e-06 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 6e-06 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 3e-05 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 1e-12 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 2e-10 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 2e-10 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 1e-07 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 9e-07 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 2e-06 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 4e-06 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 2e-12 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 4e-11 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 3e-08 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 6e-08 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 2e-05 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 4e-12 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 2e-05 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 4e-11 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 3e-04 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 3e-04 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 1e-10 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 4e-09 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 8e-08 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 4e-07 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 2e-07 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 8e-07 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 1e-06 | |
| d1l0qa2 | 301 | b.69.2.3 (A:1-301) Surface layer protein {Archaeon | 3e-07 | |
| d1l0qa2 | 301 | b.69.2.3 (A:1-301) Surface layer protein {Archaeon | 1e-04 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 1e-06 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 2e-04 | |
| d1mdah_ | 368 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 7e-06 | |
| d1mdah_ | 368 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 8e-06 | |
| d1mdah_ | 368 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 3e-05 | |
| d1ri6a_ | 333 | b.69.11.1 (A:) Putative isomerase YbhE {Escherichi | 0.001 |
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 151 bits (382), Expect = 2e-41
Identities = 63/307 (20%), Positives = 130/307 (42%), Gaps = 22/307 (7%)
Query: 139 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHND 198
+L+ +R + RV++ P +++ S+ +W+ ++ +FE L+ H +++ + + H+
Sbjct: 12 ALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSG 71
Query: 199 NWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFA 258
+ S IK W H +V +S S S D T+K+W+
Sbjct: 72 KLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQ 131
Query: 259 RCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCV 318
++ TGH V+ V + +L+ S D V++W + H+++V C+
Sbjct: 132 TGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECI 191
Query: 319 KWNQNGNWVL--------------------TASKDQIIKLYDIRAMKELESFRGHRKDVT 358
W ++ + S+D+ IK++D+ L + GH V
Sbjct: 192 SWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVR 251
Query: 359 ALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSN 418
+ +H ++ +S + D ++ W ++ ++ N H++ V L +H + +GS
Sbjct: 252 GVLFHS-GGKFILSCADDKTLRVWDYKNKRC-MKTLNAHEHFVTSLDFHKTAPYVVTGSV 309
Query: 419 DHTTKFW 425
D T K W
Sbjct: 310 DQTVKVW 316
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 123 bits (309), Expect = 1e-31
Identities = 42/224 (18%), Positives = 94/224 (41%), Gaps = 20/224 (8%)
Query: 137 HTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSH 196
+++ + +++ V P G +++ S+ +W Q+ H +R + +
Sbjct: 94 IRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQ 153
Query: 197 NDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFC------------------- 237
+ + S + ++ W KA H+ V +S+
Sbjct: 154 DGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKS 213
Query: 238 -RTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKL 296
+ S S D T+K+WD + +L GH V+ V +H ++S D +++
Sbjct: 214 GKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRV 273
Query: 297 WDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYD 340
WD K+ R + + + H++ V + +++ +V+T S DQ +K+++
Sbjct: 274 WDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 89.0 bits (219), Expect = 7e-20
Identities = 50/176 (28%), Positives = 88/176 (50%), Gaps = 3/176 (1%)
Query: 253 KVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHK 312
K W R E+ +L+GH V V +HP S++VS +D+ +K+WD ++G + GH
Sbjct: 1 KEWI-PRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHT 59
Query: 313 NMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVS 372
+ V + ++ +G + + S D IKL+D + + + + GH +V++++ P + ++ VS
Sbjct: 60 DSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMP-NGDHIVS 118
Query: 373 GSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRN 428
S D +I W V H V + + G L+ S SND T + W
Sbjct: 119 ASRDKTIKMWEVQTGYCVKTFTG-HREWVRMVRPNQDGTLIASCSNDQTVRVWVVA 173
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 72.1 bits (175), Expect = 3e-14
Identities = 27/136 (19%), Positives = 52/136 (38%), Gaps = 3/136 (2%)
Query: 295 KLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHR 354
K W + E + GH++ V V ++ + +++AS+D IK++D + +GH
Sbjct: 1 KEWIPR-PPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHT 59
Query: 355 KDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLC 414
V +++ + + + HD+ V ++ P G +
Sbjct: 60 DSVQDISFDHSGKLLASCS--ADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIV 117
Query: 415 SGSNDHTTKFWCRNRP 430
S S D T K W
Sbjct: 118 SASRDKTIKMWEVQTG 133
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 141 bits (356), Expect = 9e-38
Identities = 64/285 (22%), Positives = 108/285 (37%), Gaps = 7/285 (2%)
Query: 146 SINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGD 205
I + W R L++ SQ G+ +W+ + N + + + ++ + N++ G
Sbjct: 57 KIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGG 116
Query: 206 DGGAIKYWQ---NNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQE 262
+ N + + A D + + S DTT +WD Q+
Sbjct: 117 LDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQ 176
Query: 263 ERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQ 322
+ TGH DV S+ P L VSG D+ KLWD + G +F GH++ + + +
Sbjct: 177 TTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFP 236
Query: 323 NGNWVLTASKDQIIKL--YDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIF 380
NGN T S D +L S +T++++ ++G D +
Sbjct: 237 NGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSK-SGRLLLAGYDDFNCN 295
Query: 381 HWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFW 425
W + HDN V L G + +GS D K W
Sbjct: 296 VWDALKADRAGVLAG-HDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 110 bits (275), Expect = 5e-27
Identities = 46/249 (18%), Positives = 94/249 (37%), Gaps = 5/249 (2%)
Query: 181 ILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTD 240
L+ H I +M W + +VS G + W + N V ++ +
Sbjct: 50 TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 109
Query: 241 LKFCSCSDDTTVKVWDFARCQEERSLTGHG---WDVKSVDWHPTKSLLVSGGKDSLVKLW 297
D +++ + ++ S + +V+ D+ LW
Sbjct: 110 NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALW 169
Query: 298 DAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDV 357
D ++G++ +F GH V+ + + ++ + D KL+D+R ++F GH D+
Sbjct: 170 DIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDI 229
Query: 358 TALAWHPFHEEYFVSGSLDGSI-FHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSG 416
A+ + P + F +GS D + L + H+ + +++ G LL +G
Sbjct: 230 NAICFFP-NGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAG 288
Query: 417 SNDHTTKFW 425
+D W
Sbjct: 289 YDDFNCNVW 297
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 108 bits (270), Expect = 2e-26
Identities = 38/172 (22%), Positives = 69/172 (40%), Gaps = 2/172 (1%)
Query: 171 WNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKES 230
W+ ++ H + S+ + + VSG + K W + + H+
Sbjct: 169 WDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESD 228
Query: 231 VRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWD--VKSVDWHPTKSLLVSG 288
+ + F F + SDD T +++D QE + + + SV + + LL++G
Sbjct: 229 INAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAG 288
Query: 289 GKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYD 340
D +WDA GH N V C+ +G V T S D +K+++
Sbjct: 289 YDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 72.5 bits (176), Expect = 2e-14
Identities = 40/223 (17%), Positives = 81/223 (36%), Gaps = 5/223 (2%)
Query: 225 SAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSL 284
H + + + S S D + +WD + ++ V + + P+ +
Sbjct: 52 RGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNY 111
Query: 285 LVSGGKDSLVKLWDAKSGRELCSF---HGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDI 341
+ GG D++ +++ K+ L + N ++T+S D L+DI
Sbjct: 112 VACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDI 171
Query: 342 RAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTV 401
++ +F GH DV + FVSG+ D S W V + H++ +
Sbjct: 172 ETGQQTTTFTGHTGDVMS-LSLAPDTRLFVSGACDASAKLWDVREGMC-RQTFTGHESDI 229
Query: 402 WDLAWHPIGYLLCSGSNDHTTKFWCRNRPGDTARDKFNMGQNQ 444
+ + P G +GS+D T + + + +
Sbjct: 230 NAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICG 272
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 67.5 bits (163), Expect = 1e-12
Identities = 34/166 (20%), Positives = 65/166 (39%), Gaps = 1/166 (0%)
Query: 261 QEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKW 320
+ R+L GH + ++ W LLVS +D + +WD+ + ++ + + V+ +
Sbjct: 46 RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAY 105
Query: 321 NQNGNWVLTASKDQIIKLYDIRAMKELESF-RGHRKDVTALAWHPFHEEYFVSGSLDGSI 379
+GN+V D I +Y+++ + R L+ F ++ + S +
Sbjct: 106 APSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTT 165
Query: 380 FHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFW 425
Q H V L+ P L SG+ D + K W
Sbjct: 166 CALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLW 211
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 61.7 bits (148), Expect = 9e-11
Identities = 14/71 (19%), Positives = 30/71 (42%)
Query: 143 NRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMV 202
C I V ++ +GR L+ G +W+ + +L HD+ + + + + +
Sbjct: 269 IICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVA 328
Query: 203 SGDDGGAIKYW 213
+G +K W
Sbjct: 329 TGSWDSFLKIW 339
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 50.9 bits (120), Expect = 2e-07
Identities = 18/127 (14%), Positives = 40/127 (31%)
Query: 303 RELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAW 362
R + GH + + W + +++AS+D + ++D ++ + V A+
Sbjct: 46 RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAY 105
Query: 363 HPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTT 422
P G + + L E + +T + + S+ TT
Sbjct: 106 APSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTT 165
Query: 423 KFWCRNR 429
Sbjct: 166 CALWDIE 172
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 50.1 bits (118), Expect = 4e-07
Identities = 20/85 (23%), Positives = 33/85 (38%), Gaps = 2/85 (2%)
Query: 344 MKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWD 403
M+ + RGH + A+ W VS S DG + W + T +V + + V
Sbjct: 45 MRTRRTLRGHLAKIYAMHWGT-DSRLLVSASQDGKLIIWDS-YTTNKVHAIPLRSSWVMT 102
Query: 404 LAWHPIGYLLCSGSNDHTTKFWCRN 428
A+ P G + G D+ +
Sbjct: 103 CAYAPSGNYVACGGLDNICSIYNLK 127
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 114 bits (284), Expect = 3e-28
Identities = 51/310 (16%), Positives = 107/310 (34%), Gaps = 44/310 (14%)
Query: 152 WTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIK 211
G R+++GS +W+ + L H + S N S D +
Sbjct: 23 LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVW 82
Query: 212 YWQ------------------------------------NNMNNVKANKSAHKESVRDLS 235
+ ++ +
Sbjct: 83 NAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRC 142
Query: 236 FCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVK 295
+ S + D VKVWD +L GH V S+ + +VSG D+ ++
Sbjct: 143 VQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGI--HVVSGSLDTSIR 200
Query: 296 LWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRK 355
+WD ++G + + GH+++ ++ N +++ + D +K++DI+ + L++ +G K
Sbjct: 201 VWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGPNK 258
Query: 356 DVTALAWHPFHEEYFVSGSLDGSIFHWLVG----HETPQVEIHNVHDNTVWDLAWHPIGY 411
+A+ F++ + ++ S DG++ W + VW +
Sbjct: 259 HQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKL 318
Query: 412 LLCSGSNDHT 421
+ GS + T
Sbjct: 319 VCAVGSRNGT 328
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 96.4 bits (238), Expect = 4e-22
Identities = 55/293 (18%), Positives = 93/293 (31%), Gaps = 46/293 (15%)
Query: 171 WNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKES 230
W +L+ HD + + N +VSG D +K W H
Sbjct: 1 WRRGELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGG 59
Query: 231 VRDLSF--------------------------------------CRTDLKFCSCSDDTTV 252
V + + S S D T+
Sbjct: 60 VWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATL 119
Query: 253 KVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHK 312
+VWD Q L GH V +VSG D +VK+WD ++ L + GH
Sbjct: 120 RVWDIETGQCLHVLMGHVAAV--RCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHT 177
Query: 313 NMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVS 372
N +G V++ S D I+++D+ + + GH+ + + VS
Sbjct: 178 NR--VYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD---NILVS 232
Query: 373 GSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFW 425
G+ D ++ W + + + + + + S+D T K W
Sbjct: 233 GNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLW 285
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 79.1 bits (193), Expect = 2e-16
Identities = 42/212 (19%), Positives = 72/212 (33%), Gaps = 45/212 (21%)
Query: 255 WDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNM 314
W + + L GH V + + +VSG D+ +K+W A +G+ L + GH
Sbjct: 1 WRRGELKSPKVLKGHDDHVITC-LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGG 59
Query: 315 VLCVKWNQN--------------------------------------GNWVLTASKDQII 336
V + N V++ S+D +
Sbjct: 60 VWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATL 119
Query: 337 KLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNV 396
+++DI + L GH V + VSG+ D + W ET +H +
Sbjct: 120 RVWDIETGQCLHVLMGHVAAVR---CVQYDGRRVVSGAYDFMVKVWDPETETC---LHTL 173
Query: 397 HDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRN 428
+T + G + SGS D + + W
Sbjct: 174 QGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVE 205
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 71.0 bits (172), Expect = 7e-14
Identities = 32/164 (19%), Positives = 58/164 (35%), Gaps = 12/164 (7%)
Query: 145 CSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSG 204
+ G +++GS +W+ ++ N L H DN +VSG
Sbjct: 176 HTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSG--MELKDNILVSG 233
Query: 205 DDGGAIKYWQ-NNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEE 263
+ +K W ++ + +K + SDD TVK+WD +
Sbjct: 234 NADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFI 293
Query: 264 RSLT-----GHGWDVKSVDWHPTKSLLVSGGKD----SLVKLWD 298
R+L G G V + TK + G ++ + + + D
Sbjct: 294 RNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLD 337
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.5 bits (111), Expect = 3e-06
Identities = 21/116 (18%), Positives = 37/116 (31%), Gaps = 10/116 (8%)
Query: 152 WTPTGRRLITGSQSGEFTLWNGQSFNFEMILQA-HDHAIRSMVWSHNDNWMVSGDDGGAI 210
L++G+ +W+ ++ LQ + H N N++++ D G +
Sbjct: 223 MELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTV 282
Query: 211 KYWQNNMNNVKAN-----KSAHKESVRDLSFCRTDLKFCSCSDDTT----VKVWDF 257
K W N V + T L S + T + V DF
Sbjct: 283 KLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDF 338
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 114 bits (285), Expect = 6e-28
Identities = 66/261 (25%), Positives = 105/261 (40%), Gaps = 24/261 (9%)
Query: 146 SINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGD 205
I V ++P G+ L TG++ +W+ ++ MILQ H+ I S+ + + + +VSG
Sbjct: 123 YIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGS 182
Query: 206 DGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQ---- 261
++ W S + S D V+VWD
Sbjct: 183 GDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVER 242
Query: 262 ---EERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRE------------LC 306
E S TGH V SV + +VSG D VKLW+ ++
Sbjct: 243 LDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEV 302
Query: 307 SFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPF- 365
++ GHK+ VL V QN ++L+ SKD+ + +D ++ L +GHR V ++A
Sbjct: 303 TYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGS 362
Query: 366 ----HEEYFVSGSLDGSIFHW 382
F +GS D W
Sbjct: 363 SLGPEYNVFATGSGDCKARIW 383
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 113 bits (283), Expect = 1e-27
Identities = 66/323 (20%), Positives = 127/323 (39%), Gaps = 46/323 (14%)
Query: 146 SINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQ------------------AHDH 187
+ V ++ G L TG + ++ + L + D
Sbjct: 64 VVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDL 122
Query: 188 AIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCS 247
IRS+ +S + ++ +G + I+ W + H++ + L + + K S S
Sbjct: 123 YIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGS 182
Query: 248 DDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGR---- 303
D TV++WD Q +L+ + +G D V++WD+++G
Sbjct: 183 GDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVER 242
Query: 304 ---ELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELE------------ 348
E S GHK+ V V + ++G V++ S D+ +KL++++
Sbjct: 243 LDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEV 302
Query: 349 SFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLA--- 405
++ GH+ V ++A ++EY +SGS D + W P + + H N+V +A
Sbjct: 303 TYIGHKDFVLSVATTQ-NDEYILSGSKDRGVLFWDKKSGNPLLMLQG-HRNSVISVAVAN 360
Query: 406 ---WHPIGYLLCSGSNDHTTKFW 425
P + +GS D + W
Sbjct: 361 GSSLGPEYNVFATGSGDCKARIW 383
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 100 bits (248), Expect = 3e-23
Identities = 55/307 (17%), Positives = 115/307 (37%), Gaps = 40/307 (13%)
Query: 158 RLITGSQSGEFTLWNGQS-FNFEMILQA---HDHAIRSMVWSHNDNWMVSGDDGGAIKYW 213
+ + + L+N ++ L H + + +S++ ++ +G + Y
Sbjct: 30 DALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGCNKTTQVYR 89
Query: 214 QNNMNNVK-----------------ANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWD 256
++ + V ++ + +R + F + ++D +++WD
Sbjct: 90 VSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWD 149
Query: 257 FARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVL 316
+ L GH D+ S+D+ P+ LVSG D V++WD ++G+ + +
Sbjct: 150 IENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTT 209
Query: 317 CVKWNQNGNWVLTASKDQIIKLYDIRAMK-------ELESFRGHRKDVTALAWHPFHEEY 369
+G ++ S D+ ++++D E ES GH+ V ++ + +
Sbjct: 210 VAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTR-DGQS 268
Query: 370 FVSGSLDGSI-----------FHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSN 418
VSGSLD S+ + + H + V +A + SGS
Sbjct: 269 VVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSK 328
Query: 419 DHTTKFW 425
D FW
Sbjct: 329 DRGVLFW 335
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 91.0 bits (224), Expect = 4e-20
Identities = 45/197 (22%), Positives = 74/197 (37%), Gaps = 25/197 (12%)
Query: 171 WNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYW-------QNNMNNVKAN 223
W+ ++ + L D V + ++ +G A++ W +++ +
Sbjct: 190 WDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENES 249
Query: 224 KSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFAR------------CQEERSLTGHGW 271
+ HK+SV + F R S S D +VK+W+ E + GH
Sbjct: 250 GTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKD 309
Query: 272 DVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCV------KWNQNGN 325
V SV ++SG KD V WD KSG L GH+N V+ V N
Sbjct: 310 FVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYN 369
Query: 326 WVLTASKDQIIKLYDIR 342
T S D +++ +
Sbjct: 370 VFATGSGDCKARIWKYK 386
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 67.9 bits (164), Expect = 1e-12
Identities = 34/195 (17%), Positives = 65/195 (33%), Gaps = 36/195 (18%)
Query: 112 AAAIDMLPTVAYTDNPSTSFAAKFVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLW 171
A ++D V ++ + S ++ S+ V++T G+ +++GS LW
Sbjct: 222 AGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLW 281
Query: 172 NGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESV 231
N Q+ N + + + + + + ++ V
Sbjct: 282 NLQNANNKSDSKTPNSGTCEVTYIGHKDF------------------------------V 311
Query: 232 RDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVD------WHPTKSLL 285
++ + D S S D V WD L GH V SV P ++
Sbjct: 312 LSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVF 371
Query: 286 VSGGKDSLVKLWDAK 300
+G D ++W K
Sbjct: 372 ATGSGDCKARIWKYK 386
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 56.3 bits (134), Expect = 5e-09
Identities = 27/200 (13%), Positives = 59/200 (29%), Gaps = 27/200 (13%)
Query: 227 HKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLV 286
H V + F + + T +V+ + L+ K + T
Sbjct: 61 HTSVVCCVKFSNDGEYLATGCNKT-TQVYRVSDGSLVARLSDDSAANKDPENLNT----- 114
Query: 287 SGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKE 346
S + V ++ +G ++ T ++D++I+++DI K
Sbjct: 115 -------------------SSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKI 155
Query: 347 LESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAW 406
+ +GH +D+ + F + ++ D
Sbjct: 156 VMILQGHEQDIYS--LDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVS 213
Query: 407 HPIGYLLCSGSNDHTTKFWC 426
G + +GS D + W
Sbjct: 214 PGDGKYIAAGSLDRAVRVWD 233
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 53.3 bits (126), Expect = 5e-08
Identities = 20/177 (11%), Positives = 46/177 (25%), Gaps = 32/177 (18%)
Query: 275 SVDWHPTKSL-LVSGGKDSLVKLWDAKSGR----ELCSFHGHKNMVLCVKWNQNGNWVLT 329
+D + + L++ R EL H ++V CVK++ +G ++ T
Sbjct: 20 LLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLAT 79
Query: 330 ASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETP 389
++ ++Y + +
Sbjct: 80 GC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTS----------------------- 115
Query: 390 QVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGDTARDKFNMGQNQGY 446
D + + + P G L +G+ D + W + +
Sbjct: 116 ---SSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSL 169
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 107 bits (266), Expect = 3e-26
Identities = 52/283 (18%), Positives = 98/283 (34%), Gaps = 20/283 (7%)
Query: 152 WTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIK 211
+++++G + +W+ + + IL H ++ + + S D +
Sbjct: 21 LQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVW 80
Query: 212 YWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGW 271
L + +CS D ++ VWD A +
Sbjct: 81 DVNTGEMLNT----LIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVG 136
Query: 272 DVKS-VDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTA 330
+ +VS D +K+W+ + + + +GHK + C+++ V++
Sbjct: 137 HRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSG 194
Query: 331 SKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHW-------- 382
S D I+L+DI L GH + V F + VSG+ DG I W
Sbjct: 195 SSDNTIRLWDIECGACLRVLEGHEELVR---CIRFDNKRIVSGAYDGKIKVWDLVAALDP 251
Query: 383 LVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFW 425
T + H V+ L + + + S S+D T W
Sbjct: 252 RAPAGTLCLRTLVEHSGRVFRLQFD--EFQIVSSSHDDTILIW 292
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 70.6 bits (171), Expect = 7e-14
Identities = 38/179 (21%), Positives = 70/179 (39%), Gaps = 17/179 (9%)
Query: 171 WNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKES 230
+ +L H A+ + + SGD IK W + + HK
Sbjct: 123 ASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGD--RTIKVWNTSTCEFVRTLNGHKRG 180
Query: 231 VRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGK 290
+ L + D S S D T+++WD R L GH V+ + + + +VSG
Sbjct: 181 IACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKR--IVSGAY 236
Query: 291 DSLVKLWDAKSGRE---------LCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYD 340
D +K+WD + + L + H V ++++ ++++S D I ++D
Sbjct: 237 DGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD--EFQIVSSSHDDTILIWD 293
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 68.0 bits (164), Expect = 5e-13
Identities = 48/272 (17%), Positives = 86/272 (31%), Gaps = 51/272 (18%)
Query: 224 KSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKS 283
+S + V L + K S D T+K+WD + +R LTGH V + +
Sbjct: 11 RSETSKGVYCLQYDDQ--KIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVI 68
Query: 284 LLVSGG--------------------------------------KDSLVKLWDAKSGREL 305
+ S KD + +WD S ++
Sbjct: 69 ITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDI 128
Query: 306 ---CSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAW 362
GH+ V V ++ +AS D+ IK+++ + + + GH++ +
Sbjct: 129 TLRRVLVGHRAAVNVVDFDDKYIV--SASGDRTIKVWNTSTCEFVRTLNGHKRGIA---C 183
Query: 363 HPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTT 422
+ + VSGS D +I W + + + + + SG+ D
Sbjct: 184 LQYRDRLVVSGSSDNTIRLWDIECGAC---LRVLEGHEELVRCIRFDNKRIVSGAYDGKI 240
Query: 423 KFWCRNRPGDTARDKFNMGQNQGYGEQNAVFA 454
K W D + VF
Sbjct: 241 KVWDLVAALDPRAPAGTLCLRTLVEHSGRVFR 272
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 67.2 bits (162), Expect = 8e-13
Identities = 28/156 (17%), Positives = 51/156 (32%), Gaps = 15/156 (9%)
Query: 152 WTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIK 211
+ +++ S +WN + F L H I + D +VSG I+
Sbjct: 144 VDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGI--ACLQYRDRLVVSGSSDNTIR 201
Query: 212 YWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEE-------- 263
W ++ + + + S + D +KVWD +
Sbjct: 202 LW--DIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLC 259
Query: 264 -RSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWD 298
R+L H V + + +VS D + +WD
Sbjct: 260 LRTLVEHSGRVFRLQFDE--FQIVSSSHDDTILIWD 293
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 61.0 bits (146), Expect = 1e-10
Identities = 29/163 (17%), Positives = 52/163 (31%), Gaps = 6/163 (3%)
Query: 264 RSLTGHGWDVKSV-DWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQ 322
+ + K V +VSG +D+ +K+WD + GH VLC+++++
Sbjct: 6 QRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDE 65
Query: 323 NGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHW 382
++ + + M F+ V+ S D SI W
Sbjct: 66 RVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVL-----HLRFNNGMMVTCSKDRSIAVW 120
Query: 383 LVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFW 425
+ T + + + S S D T K W
Sbjct: 121 DMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVW 163
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 85.7 bits (210), Expect = 2e-18
Identities = 33/294 (11%), Positives = 77/294 (26%), Gaps = 34/294 (11%)
Query: 146 SINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMI--LQAHDHAIRSMVWSHNDNWMVS 203
I+ W ++ + E ++ + + L+ H+ + + W+ + N +V+
Sbjct: 9 PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVT 68
Query: 204 GDDGGAIKYWQNNMNNVK--ANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQ 261
W K + R + + + KF S + + F +
Sbjct: 69 CGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEN 128
Query: 262 E----ERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLC 317
+ + V S+DWHP LL +G D +++ A
Sbjct: 129 DWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKM 188
Query: 318 VKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDG 377
V + + S D
Sbjct: 189 PFGELM------------------------FESSSSCGWVHGVCFSANG-SRVAWVSHDS 223
Query: 378 SIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPG 431
++ + + + + + + L+ +G + F + G
Sbjct: 224 TVCLADADKKMAVATLAS-ETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAG 276
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 82.6 bits (202), Expect = 2e-17
Identities = 43/316 (13%), Positives = 83/316 (26%), Gaps = 32/316 (10%)
Query: 138 TSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHN 197
L ++ + V W P R++T +W + ++ L +
Sbjct: 45 HELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWA 104
Query: 198 DNWMVS--GDDGGAIKYW----QNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTT 251
N G I +N+ K K + +V L + + + S D
Sbjct: 105 PNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFK 164
Query: 252 VKVWDFA------------------RCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSL 293
+++ + + V V + S + DS
Sbjct: 165 CRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDST 224
Query: 294 VKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGH 353
V L DA + + +L V + + V D L+ + SF G
Sbjct: 225 VCLADADKKMAVATLASETLPLLAVTFITESSLVAAGH-DCFPVLFTYDSAAGKLSFGGR 283
Query: 354 RKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIG--- 410
+ + G + ++H N+V ++ G
Sbjct: 284 LDVPKQSSQRGLTARERFQ---NLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAK 340
Query: 411 -YLLCSGSNDHTTKFW 425
C+ D W
Sbjct: 341 CSQFCTTGMDGGMSIW 356
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 73.4 bits (178), Expect = 2e-14
Identities = 25/215 (11%), Positives = 54/215 (25%), Gaps = 7/215 (3%)
Query: 222 ANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFA--RCQEERSLTGHGWDVKSVDWH 279
A S E + ++ + + C ++ V +++ + + + L H V VDW
Sbjct: 1 AYHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWA 60
Query: 280 PTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTAS-----KDQ 334
P + +V+ G D +W K + + N A
Sbjct: 61 PDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVIS 120
Query: 335 IIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIH 394
I + + + + +GS D + + +
Sbjct: 121 ICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPA 180
Query: 395 NVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNR 429
+ G +R
Sbjct: 181 PTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSR 215
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 61.8 bits (148), Expect = 9e-11
Identities = 19/181 (10%), Positives = 48/181 (26%), Gaps = 6/181 (3%)
Query: 171 WNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKES 230
+ + + +S N + + + + A ++
Sbjct: 186 SKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLP 245
Query: 231 VRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGK 290
+ ++F + D V ++ + + S G K +
Sbjct: 246 LLAVTFITESSLVAAGHDCFPV-LFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNL 304
Query: 291 DSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNW----VLTASKDQIIKLYDIRAMKE 346
D + + HKN V + G T D + ++D+R+++
Sbjct: 305 DKKASSEGS-AAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLES 363
Query: 347 L 347
Sbjct: 364 A 364
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 57.9 bits (138), Expect = 1e-09
Identities = 21/182 (11%), Positives = 52/182 (28%), Gaps = 8/182 (4%)
Query: 135 FVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVW 194
+ + + ++ V ++ G R+ S L + L + + ++ +
Sbjct: 192 ELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTF 251
Query: 195 SHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKV 254
+ + +G D + + K + + + S + + D
Sbjct: 252 ITESSLVAAGHDCF-PVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASS 310
Query: 255 WDFARCQEERSLTGHGWDVKSVDWHP----TKSLLVSGGKDSLVKLWDAKSGRELCSFHG 310
A + H V + S + G D + +WD +S +
Sbjct: 311 EGSAA-AGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLES--ALKD 367
Query: 311 HK 312
K
Sbjct: 368 LK 369
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 83.7 bits (205), Expect = 6e-18
Identities = 46/307 (14%), Positives = 98/307 (31%), Gaps = 15/307 (4%)
Query: 126 NPSTSFAAKFVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNF-----EM 180
P A+ ++T + + V + R + TG + G +W+ ++
Sbjct: 35 GPGIPRHARQINTLNHGE--VVCAVTISNPTRHVYTGGK-GCVKVWDISHPGNKSPVSQL 91
Query: 181 ILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANK--SAHKESVRDLSFCR 238
D+ IRS + ++ G + + W + ++ + L+
Sbjct: 92 DCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP 151
Query: 239 TDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWD 298
SC D + VWD R GH +D + L +GG D+ V+
Sbjct: 152 DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVR-SW 210
Query: 299 AKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVT 358
H + + + + G W+ + +++ + + H V
Sbjct: 211 DLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK-YQLHLHESCVL 269
Query: 359 ALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSN 418
+L + ++FVS D + W + + ++V + +GS
Sbjct: 270 SLKFAY-CGKWFVSTGKDNLLNAWRTPYGASIFQSK--ESSSVLSCDISVDDKYIVTGSG 326
Query: 419 DHTTKFW 425
D +
Sbjct: 327 DKKATVY 333
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 72.9 bits (177), Expect = 2e-14
Identities = 27/171 (15%), Positives = 61/171 (35%), Gaps = 3/171 (1%)
Query: 171 WNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKES 230
W+ + Q H + S++ + +G ++ W
Sbjct: 168 WDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQ 226
Query: 231 VRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGK 290
+ L +C T ++ + +++ ++ L H V S+ + VS GK
Sbjct: 227 IFSLGYCPTG-EWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGK 285
Query: 291 DSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDI 341
D+L+ W G + + VL + + +++T S D+ +Y++
Sbjct: 286 DNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 59.1 bits (141), Expect = 7e-10
Identities = 30/194 (15%), Positives = 55/194 (28%), Gaps = 7/194 (3%)
Query: 240 DLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDA 299
++ D + ++ +L HG V +V + +GGK VK+WD
Sbjct: 22 QMQPVPFPPDALIGPGIPRHARQINTL-NHGEVVCAVTISNPTRHVYTGGKGC-VKVWDI 79
Query: 300 -----KSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHR 354
KS N + K +G ++ + + ++D+ A
Sbjct: 80 SHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTS 139
Query: 355 KDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLC 414
A + H V H + + G L
Sbjct: 140 SAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLW 199
Query: 415 SGSNDHTTKFWCRN 428
+G D+T + W
Sbjct: 200 TGGLDNTVRSWDLR 213
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.3 bits (113), Expect = 2e-06
Identities = 15/214 (7%), Positives = 47/214 (21%), Gaps = 1/214 (0%)
Query: 1 MMYGDPQQHHNQQQPGGGGDHFNRGPQPPQPPGPPMMRQPSASSSTLNPPEFHHLPSNPP 60
++ + + + + +
Sbjct: 122 SIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQG 181
Query: 61 YDAHGDSFAAKRMRKLTQRRAVDYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPT 120
+ +D T + R Q+ + + L
Sbjct: 182 HTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAV 241
Query: 121 VAYTDNPSTSFAAKFVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEM 180
+ N K L+ + + + + G+ ++ + W +
Sbjct: 242 GMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGA-SI 300
Query: 181 ILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQ 214
++ S S +D ++V+G ++
Sbjct: 301 FQSKESSSVLSCDISVDDKYIVTGSGDKKATVYE 334
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 83.4 bits (204), Expect = 1e-17
Identities = 32/252 (12%), Positives = 64/252 (25%), Gaps = 55/252 (21%)
Query: 226 AHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLT------GHGWDVKSVDW- 278
AH + +S C + SCS D +KVWD E H + VD
Sbjct: 12 AHDADIFSVSACNSFT--VSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVL 69
Query: 279 ------HPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVL---- 328
L+ + + + E K +L ++ W L
Sbjct: 70 QAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGA 129
Query: 329 -----------TASKDQIIKLYDIRAMKE------------------LESFRGHRKDVTA 359
++ + +ES + T+
Sbjct: 130 SNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATS 189
Query: 360 LAWHPFHEEYFVSGSLDGSI-----FHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLC 414
+ +G +G++ + + N++ + + P G LL
Sbjct: 190 VDISE--RGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLA 247
Query: 415 SGSNDHTTKFWC 426
+ ++
Sbjct: 248 IAHDSNSFGCIT 259
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 80.3 bits (196), Expect = 1e-16
Identities = 40/311 (12%), Positives = 82/311 (26%), Gaps = 69/311 (22%)
Query: 181 ILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKS------AHKESVRDL 234
+AHD I S+ +++ VS G +K W N + + + K HK + +
Sbjct: 9 AGKAHDADIFSVSAC--NSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHV 66
Query: 235 SFCRT-------DLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTK----- 282
+ + S + + R E + + D+ D
Sbjct: 67 DVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALK 126
Query: 283 ----------SLLVSGGKDSLVKLWDAKSGRE------------------LCSFHGHKNM 314
LV+ +W + + S
Sbjct: 127 WGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQF 186
Query: 315 VLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAW-----HPFHEEY 369
V ++ G + T + +++ ++ ++ L +F +
Sbjct: 187 ATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSL 245
Query: 370 FVSGSLDGSIFHW---------------LVGHETPQVEIHNVHDNTVWDLAWHPIGYLLC 414
S + H + H + V L+++ G LC
Sbjct: 246 LAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLC 305
Query: 415 SGSNDHTTKFW 425
S D +FW
Sbjct: 306 SAGWDGKLRFW 316
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 68.3 bits (165), Expect = 8e-13
Identities = 40/339 (11%), Positives = 89/339 (26%), Gaps = 75/339 (22%)
Query: 154 PTGRRLITGSQSGEFTLWNGQS----FNFEMILQAHDHAIR---------SMVWSHNDNW 200
++ S G +W+ + + H +
Sbjct: 22 ACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCL 81
Query: 201 MVSGDDGGAIKYWQNNMNNVKA----------NKSAHKESVRDLSFCRTDL-----KFCS 245
+ + G + +++ + + K S L + ++ + +
Sbjct: 82 VATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVA 141
Query: 246 CSDDTTVKVWDFARCQEE------------------RSLTGHGWDVKSVDWHPTKSLLVS 287
T +W F +E S SVD + L+ +
Sbjct: 142 TDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE-RGLIAT 200
Query: 288 GGKDSLVKL------WDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDI 341
G + V++ + S + N + VK++ G+ + A +
Sbjct: 201 GFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITL 260
Query: 342 ----------------RAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVG 385
+ + H V +L+++ E S DG + W V
Sbjct: 261 YETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFND-SGETLCSAGWDGKLRFWDVK 319
Query: 386 HETPQVEIHNVHDNTV----WDLAWHPIGYLLCSGSNDH 420
+ ++ N+H + + LA G L
Sbjct: 320 TKE-RITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFD 357
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 66.4 bits (160), Expect = 4e-12
Identities = 27/227 (11%), Positives = 65/227 (28%), Gaps = 43/227 (18%)
Query: 182 LQAHDHAIRSMVWSHNDNWMVSGDDGGAIK------YWQNNMNNVKANKSAHKESVRDLS 235
S+ S + +G + G ++ + + + S+R +
Sbjct: 180 PMTPSQFATSVDISE-RGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVK 238
Query: 236 FCRTDLKFCSCSDDTTV---KVWDFARCQ-------------EERSLTGHGWDVKSVDWH 279
F D + +++ + H V S+ ++
Sbjct: 239 FSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFN 298
Query: 280 PTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMV----LCVKWNQNGNWVLTASKDQI 335
+ L S G D ++ WD K+ + + + H + + + +++G+ + +
Sbjct: 299 DSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDV 358
Query: 336 IKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHW 382
L +K + E LD SI +
Sbjct: 359 KFL---------------KKGWRSGMGAD-LNESLCCVCLDRSIRWF 389
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 65.3 bits (157), Expect = 8e-12
Identities = 32/216 (14%), Positives = 63/216 (29%), Gaps = 30/216 (13%)
Query: 137 HTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHD------HAIR 190
S V + G + TG +G + + ++ ++IR
Sbjct: 177 VESPMTPSQFATSVDISERGL-IATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIR 235
Query: 191 SMVWSHNDNWMVSGDDGGAIKYWQ----------------NNMNNVKANKSAHKESVRDL 234
S+ +S + + D + + + + AH V L
Sbjct: 236 SVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSL 295
Query: 235 SFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVK----SVDWHPTKSLLVSGGK 290
SF + CS D ++ WD + +L H D++ + L G
Sbjct: 296 SFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPG- 354
Query: 291 DSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNW 326
+ + K G + CV +++ W
Sbjct: 355 --VFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRW 388
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 45.6 bits (106), Expect = 1e-05
Identities = 18/99 (18%), Positives = 38/99 (38%), Gaps = 15/99 (15%)
Query: 349 SFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHW---LVGHETPQVEIHN-------VHD 398
+ + H D+ +++ + VS S DG + W L+ +E P+ + ++ +H
Sbjct: 9 AGKAHDADIFSVSACN---SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHH 65
Query: 399 NTVWDLAW--HPIGYLLCSGSNDHTTKFWCRNRPGDTAR 435
V L+ + S F+ R +T +
Sbjct: 66 VDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKK 104
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 78.8 bits (192), Expect = 3e-16
Identities = 26/313 (8%), Positives = 66/313 (21%), Gaps = 30/313 (9%)
Query: 146 SINRVLWTPTGRRLITGSQSGEFT--LWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVS 203
I V + +++ ++ + + + +M N + V
Sbjct: 44 RIRYVRRGGDTKVAFIHGTREGDFLGIYDYRT-GKAEKFEENLGNVFAMGVDRNGKFAVV 102
Query: 204 GDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDF------ 257
+D I + + + + D + + +
Sbjct: 103 ANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIH 162
Query: 258 ---ARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGR-------ELCS 307
++ + T + + L SL D +
Sbjct: 163 VYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFV 222
Query: 308 FHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMK----ELESFRGHRKDVTALAWH 363
K D + + + +
Sbjct: 223 IPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVP 282
Query: 364 PFHEE--YFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHT 421
E Y+ G + + V +T +V + + DL + +D
Sbjct: 283 VHGEFAAYYQGAPEKGVLLKYDV--KTRKVTEVKNN---LTDLRLSADRKTVMVRKDDGK 337
Query: 422 TKFWCRNRPGDTA 434
+ +P D
Sbjct: 338 IYTFPLEKPEDER 350
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 66.8 bits (161), Expect = 2e-12
Identities = 12/177 (6%), Positives = 38/177 (21%), Gaps = 18/177 (10%)
Query: 142 KNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMI-------LQAHDHAIRSMVW 194
+ + L S + NF + +
Sbjct: 176 TENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKL 235
Query: 195 SHNDNWMVSGDDGGAIKYWQNNMNNVKANK-------SAHKESVRDLSFCRTDLKFCSCS 247
+G+ Y +++ NV + +
Sbjct: 236 VPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAP 295
Query: 248 DDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRE 304
+ + +D R +T ++ + + ++ D + + + +
Sbjct: 296 EKGVLLKYDVKT----RKVTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPED 348
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 55.3 bits (131), Expect = 1e-08
Identities = 16/227 (7%), Positives = 49/227 (21%), Gaps = 19/227 (8%)
Query: 137 HTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSH 196
T + S P G +++ + + + +
Sbjct: 130 ITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATT-ENSHDYAPAFDA 188
Query: 197 NDNWMVSGDDGGAIKYWQNNMNNVKANKSA-------HKESVRDLSFCRTDLKFCSCSDD 249
+ + + N + S + + D
Sbjct: 189 DSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYD 248
Query: 250 TTVKVW-------DFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSG 302
D + L + + ++ +D K+
Sbjct: 249 LNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTR 308
Query: 303 RELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELES 349
+ KN + ++ + + V+ D I + + ++ +
Sbjct: 309 KV----TEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERT 351
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 51.8 bits (122), Expect = 2e-07
Identities = 21/200 (10%), Positives = 50/200 (25%), Gaps = 12/200 (6%)
Query: 235 SFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDS-- 292
F D + + D + + ++ V + G
Sbjct: 9 DFSPLDGDLIAFVSRGQAFIQDVSGTYVLK--VPEPLRIRYVRRGGDTKVAFIHGTREGD 66
Query: 293 LVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRG 352
+ ++D ++G + F + V + ++NG + + A+ I D+ K R
Sbjct: 67 FLGIYDYRTG-KAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERS 125
Query: 353 HRKDVTALAWHPFH-------EEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLA 405
+T + E ++ ++ + A
Sbjct: 126 REAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPA 185
Query: 406 WHPIGYLLCSGSNDHTTKFW 425
+ L S
Sbjct: 186 FDADSKNLYYLSYRSLDPSP 205
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 46.8 bits (109), Expect = 6e-06
Identities = 16/128 (12%), Positives = 32/128 (25%), Gaps = 11/128 (8%)
Query: 146 SINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEM-------ILQAHDHAIRSMVWSHND 198
S N P G N + L++ V
Sbjct: 229 SPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFA 288
Query: 199 NWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFA 258
+ + G + + V K ++ DL DD + +
Sbjct: 289 AYYQGAPEKGVLLKYDVKTRKVTE----VKNNLTDLRLSADRKTVMVRKDDGKIYTFPLE 344
Query: 259 RCQEERSL 266
+ ++ER++
Sbjct: 345 KPEDERTV 352
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 42.9 bits (99), Expect = 9e-05
Identities = 21/186 (11%), Positives = 44/186 (23%), Gaps = 7/186 (3%)
Query: 275 SVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKD- 333
+ D+ P L++ + D L + V+ +
Sbjct: 7 AEDFSPLDGDLIAFVSRGQAFIQDVSGTYVL--KVPEPLRIRYVRRGGDTKVAFIHGTRE 64
Query: 334 -QIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVE 392
+ +YD R + E F + +V A+ + V+ D +
Sbjct: 65 GDFLGIYDYRT-GKAEKFEENLGNVFAMGVDRNGKFAVVAN--DRFEIMTVDLETGKPTV 121
Query: 393 IHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGDTARDKFNMGQNQGYGEQNAV 452
I + + D + G + D E +
Sbjct: 122 IERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHD 181
Query: 453 FAGRMP 458
+A
Sbjct: 182 YAPAFD 187
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 73.8 bits (179), Expect = 5e-15
Identities = 41/280 (14%), Positives = 74/280 (26%), Gaps = 10/280 (3%)
Query: 146 SINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGD 205
I + P LI+GS G W+ S + Q H + I S+ S +
Sbjct: 15 GITALTVNP----LISGSYDGRIMEWSSSS-----MHQDHSNLIVSLDNSKAQEYSSISW 65
Query: 206 DGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERS 265
D K A + + D T + +
Sbjct: 66 DDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSA 125
Query: 266 LTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGN 325
++ V + + + + + G
Sbjct: 126 VSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGK 185
Query: 326 WVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVG 385
+L + + +K + + E+ +GSLD +IF + V
Sbjct: 186 ILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVK 245
Query: 386 HETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFW 425
++ N H + V +L W L+ S D K W
Sbjct: 246 RPMKIIKALNAHKDGVNNLLWETPSTLV-SSGADACIKRW 284
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 56.1 bits (133), Expect = 4e-09
Identities = 18/119 (15%), Positives = 35/119 (29%), Gaps = 2/119 (1%)
Query: 181 ILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTD 240
I + + + + S +
Sbjct: 168 ISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEE 227
Query: 241 LKFCSCSDDTTVKVWDFARCQEE-RSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWD 298
+ S DT + ++ R + ++L H V ++ W S LVS G D+ +K W+
Sbjct: 228 DLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETP-STLVSSGADACIKRWN 285
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 52.3 bits (123), Expect = 7e-08
Identities = 13/158 (8%), Positives = 49/158 (31%), Gaps = 2/158 (1%)
Query: 185 HDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFC 244
++ + + D + + E+ +
Sbjct: 130 QNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLY 189
Query: 245 SCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWD-AKSGR 303
R + +++ + + + + L+ +G D+ + ++ + +
Sbjct: 190 DLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMK 249
Query: 304 ELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDI 341
+ + + HK+ V + W ++++ D IK +++
Sbjct: 250 IIKALNAHKDGVNNLLWETPS-TLVSSGADACIKRWNV 286
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 46.9 bits (109), Expect = 4e-06
Identities = 11/64 (17%), Positives = 30/64 (46%), Gaps = 9/64 (14%)
Query: 264 RSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQN 323
++++GH + ++ +P L+SG D + W + S + H N+++ + ++
Sbjct: 7 KTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMHQ-----DHSNLIVSLDNSKA 57
Query: 324 GNWV 327
+
Sbjct: 58 QEYS 61
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 46.1 bits (107), Expect = 8e-06
Identities = 20/84 (23%), Positives = 29/84 (34%), Gaps = 11/84 (13%)
Query: 345 KELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDL 404
+ L++ GH K +TAL +P +SGS DG I W +H H N + L
Sbjct: 4 EVLKTISGHNKGITALTVNP-----LISGSYDGRIMEWSSSS------MHQDHSNLIVSL 52
Query: 405 AWHPIGYLLCSGSNDHTTKFWCRN 428
+D
Sbjct: 53 DNSKAQEYSSISWDDTLKVNGITK 76
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 45.7 bits (106), Expect = 9e-06
Identities = 29/264 (10%), Positives = 58/264 (21%), Gaps = 28/264 (10%)
Query: 181 ILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTD 240
+ H+ I ++ + ++SG G I W + + H + L +
Sbjct: 8 TISGHNKGITALTVNP----LISGSYDGRIMEW-----SSSSMHQDHSNLIVSLDNSKAQ 58
Query: 241 LKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAK 300
WD + G K + V + L
Sbjct: 59 EYSSIS--------WDDTLKVNGITKHEFGSQPKVASANNDGFTAVLT--NDDDLLILQS 108
Query: 301 SGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTAL 360
++ + V +QN V + I + R + +
Sbjct: 109 FTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYI 168
Query: 361 AWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLC------ 414
+ P + + + L E
Sbjct: 169 SISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEED 228
Query: 415 ---SGSNDHTTKFWCRNRPGDTAR 435
+GS D + RP +
Sbjct: 229 LVATGSLDTNIFIYSVKRPMKIIK 252
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 44.2 bits (102), Expect = 3e-05
Identities = 11/87 (12%), Positives = 26/87 (29%), Gaps = 2/87 (2%)
Query: 171 WNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQ-NNMNNVKANKSAHKE 229
+ + + ++ + +G I + + +AHK+
Sbjct: 200 RWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKD 259
Query: 230 SVRDLSFCRTDLKFCSCSDDTTVKVWD 256
V +L + S D +K W+
Sbjct: 260 GVNNLLWET-PSTLVSSGADACIKRWN 285
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 43.0 bits (99), Expect = 6e-05
Identities = 16/128 (12%), Positives = 38/128 (29%), Gaps = 9/128 (7%)
Query: 301 SGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTAL 360
L + GH + + N +++ S D I + +M + H + +L
Sbjct: 2 HDEVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMHQ-----DHSNLIVSL 52
Query: 361 AWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDH 420
E +S + Q ++ + +++ + + L+
Sbjct: 53 DNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGD 112
Query: 421 TTKFWCRN 428
K N
Sbjct: 113 IIKSVRLN 120
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 72.6 bits (176), Expect = 3e-14
Identities = 39/334 (11%), Positives = 90/334 (26%), Gaps = 62/334 (18%)
Query: 152 WTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIK 211
+ITG+ +++ + F + L HD + ++ ++H + D
Sbjct: 19 LQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRV 78
Query: 212 YWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSC-SDDTTVKVWDFARCQEERSLTGHG 270
+ + + ++K+ S D T+ VW +
Sbjct: 79 WDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEH 138
Query: 271 WDVKSVD---------------------WHPTKSLLVSGGKDSLVKLWDAKSGRELCSFH 309
+++VSG D+ + +WD + L
Sbjct: 139 DYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILS 198
Query: 310 GHKNMVLCVKWNQNGNWVLTASKDQIIK-------------------------------- 337
GH + + ++ ++AS D I+
Sbjct: 199 GHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVS 258
Query: 338 ------LYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQV 391
+ A F H +++A+ + VSGS + + +
Sbjct: 259 AAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVH 317
Query: 392 EIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFW 425
+ +W + + L+ + D +
Sbjct: 318 ANILKDADQIWSVNFKG-KTLVAAVEKDGQSFLE 350
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 71.1 bits (172), Expect = 1e-13
Identities = 24/179 (13%), Positives = 59/179 (32%), Gaps = 1/179 (0%)
Query: 262 EERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWN 321
+ +L GH V + + +++G D +++++D+ + + L GH V +K+
Sbjct: 4 QRTTLRGHMTSVITC-LQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYA 62
Query: 322 QNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFH 381
G V ++ + + + + +Y V+GS D ++
Sbjct: 63 HGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHV 122
Query: 382 WLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGDTARDKFNM 440
W + E+ + HD + Y + + ++
Sbjct: 123 WKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDN 181
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 62.2 bits (149), Expect = 7e-11
Identities = 29/205 (14%), Positives = 64/205 (31%), Gaps = 4/205 (1%)
Query: 225 SAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSL 284
H SV D + +DD ++V+D + L+GH V ++ + L
Sbjct: 9 RGHMTSVIT-CLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGIL 67
Query: 285 LVSGGKDSLVKLWDAKSGRELCSFHGHK-NMVLCVKWNQNGNWVLTASKDQIIKLYDIRA 343
+ ++ K + L + +N +++T S+D + ++ +
Sbjct: 68 VSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPK 127
Query: 344 MKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWD 403
+ L +H E + G L G + + + +DNT+
Sbjct: 128 ESSVPDHGEEHDYP--LVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIV 185
Query: 404 LAWHPIGYLLCSGSNDHTTKFWCRN 428
+ L + +
Sbjct: 186 WDVAQMKCLYILSGHTDRIYSTIYD 210
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 59.9 bits (143), Expect = 3e-10
Identities = 32/237 (13%), Positives = 73/237 (30%), Gaps = 8/237 (3%)
Query: 149 RVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHD-HAIRSMVWSHNDNWMVSGDDG 207
V P + + ++ L + H S + N +VSG
Sbjct: 121 HVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYD 180
Query: 208 GAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLT 267
+ W S H + + + + S S DTT+++WD + +L
Sbjct: 181 NTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQ 240
Query: 268 GHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWV 327
GH V + + + + + F H + + + +
Sbjct: 241 GHTALVGLLRLSDKFLVSA----AADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNI 296
Query: 328 LTASKDQIIKLYDIRAMKELES-FRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWL 383
L + + +Y++R+ K + + + ++ + + + DG F +
Sbjct: 297 LVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKG--KTLVAAVEKDGQSFLEI 351
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 54.1 bits (128), Expect = 3e-08
Identities = 39/287 (13%), Positives = 79/287 (27%), Gaps = 7/287 (2%)
Query: 57 SNPPYDAHGDSFAAKRMRKLTQRRAVDYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAID 116
S D + +V Y I+ SRD T+
Sbjct: 71 STDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESS 130
Query: 117 MLPTVAYTDNPSTSFAAKFVHTSLNKNRCSINRVLWTPT-GRRLITGSQSGEFTLWNGQS 175
+ D P + + R + V G +++GS +W+
Sbjct: 131 VPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQ 190
Query: 176 FNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLS 235
IL H I S ++ H +S I+ W + H V
Sbjct: 191 MKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALV---- 246
Query: 236 FCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVK 295
S + + R + H ++ ++ ++ G ++
Sbjct: 247 GLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQFN 306
Query: 296 LWDAKSGREL-CSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDI 341
+++ +SG+ + + + + V + V KD L +
Sbjct: 307 IYNLRSGKLVHANILKDADQIWSVNFKGKTL-VAAVEKDGQSFLEIL 352
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 71.8 bits (174), Expect = 5e-14
Identities = 36/310 (11%), Positives = 87/310 (28%), Gaps = 33/310 (10%)
Query: 146 SINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQA---HDHAIRSMVWSHNDNWMV 202
I+ + P+ L+ S G T++ + L + H + + N + +
Sbjct: 13 YISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQI 72
Query: 203 --SGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARC 260
G +K + +A + D K + S D ++V D
Sbjct: 73 YVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNY 132
Query: 261 QEERSLTGHGWDVKSVDWHPTKSLLVSGGK------DSLVKLWDAKSGREL----CSFHG 310
+ + + + ++ + + +S V+ + +
Sbjct: 133 GDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGL 192
Query: 311 HKNMVLCVKWNQNGNWVLTASKDQIIKLYD---------------IRAMKELESFRGHRK 355
+ + +S D + + R +
Sbjct: 193 KYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAY 252
Query: 356 DVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCS 415
V ++ + P H ++ + DG I W + ++++V +LC
Sbjct: 253 PVNSIEFSPRH-KFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVV--KIACSDNILCL 309
Query: 416 GSNDHTTKFW 425
++D T K
Sbjct: 310 ATSDDTFKTN 319
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 67.6 bits (163), Expect = 1e-12
Identities = 27/273 (9%), Positives = 75/273 (27%), Gaps = 28/273 (10%)
Query: 181 ILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKA---NKSAHKESVRDLSFC 237
I QA I + + + ++ G++ ++ ++ +K + +F
Sbjct: 6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFI 65
Query: 238 RTD--LKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVK 295
+ +KV + L++ D L++
Sbjct: 66 DNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIE 125
Query: 296 LWDAKSGRELCSF------HGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELES 349
+ D ++ + + K + N + ++ + ++ + + ++
Sbjct: 126 VIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNG 185
Query: 350 ---FRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVG--------------HETPQVE 392
G + + +A P +E + S+DG +
Sbjct: 186 TIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNL 245
Query: 393 IHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFW 425
V + + P L + +D W
Sbjct: 246 KDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCW 278
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 66.0 bits (159), Expect = 4e-12
Identities = 23/195 (11%), Positives = 60/195 (30%), Gaps = 24/195 (12%)
Query: 185 HDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKA----NKSAHKESVRDLSFCRTD 240
+ N + ++ G + +++++ + + +
Sbjct: 147 TKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQ 206
Query: 241 LKFCSCSDDTTVKVWD---------------FARCQEERSLTGHGWDVKSVDWHPTKSLL 285
+ S D V V F + T + V S+++ P L
Sbjct: 207 EGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFL 266
Query: 286 VSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMK 345
+ G D ++ W+ ++ +++ +F N VK + N + A+ D K
Sbjct: 267 YTAGSDGIISCWNLQTRKKIKNFAKF-NEDSVVKIACSDNILCLATSDDTFKTNA----A 321
Query: 346 ELESFRGHRKDVTAL 360
++ + + +
Sbjct: 322 IDQTIELNASSIYII 336
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 61.8 bits (148), Expect = 7e-11
Identities = 21/237 (8%), Positives = 53/237 (22%), Gaps = 14/237 (5%)
Query: 217 MNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDF---ARCQEERSLTGHGWDV 273
M V+ A K+ + D+ + S D ++ V+ F A+ + + +
Sbjct: 1 MQIVQIE-QAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPL 59
Query: 274 KSVDWHP-TKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASK 332
++ T + G + D + ++ + + + G+ L A+
Sbjct: 60 LCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAAS 119
Query: 333 DQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSL------DGSIFHWLVGH 386
+ + + S + + + +
Sbjct: 120 WDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPL 179
Query: 387 ETPQVEIHNVHD---NTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGDTARDKFNM 440
S D + GD
Sbjct: 180 CEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRF 236
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 42.5 bits (98), Expect = 1e-04
Identities = 8/51 (15%), Positives = 17/51 (33%)
Query: 391 VEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGDTARDKFNMG 441
V+I + + D+ P LL S D + + + ++
Sbjct: 4 VQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLR 54
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 67.8 bits (164), Expect = 9e-13
Identities = 29/319 (9%), Positives = 74/319 (23%), Gaps = 49/319 (15%)
Query: 152 WTPTGRRLITGSQSGEFTLWNGQSFN-FEMILQAHDHAIRSMVWSHNDNWM-VSGDDGGA 209
+I + + + S ++ + + + + ++ V + G
Sbjct: 4 LKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGD 63
Query: 210 IKYWQNNMNNVKA------NKSAHKESVRDLSFCRTDLKFCSCSDDTT------------ 251
I + S+ + + + + T
Sbjct: 64 IYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPR 123
Query: 252 VKVWDFARCQEERSLTGHGWD--VKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFH 309
++V+ A E + + V + SL V+G + + K L +
Sbjct: 124 LEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRN 183
Query: 310 G----------------------HKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMK-E 346
+ ++ + TA D++ K
Sbjct: 184 WNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTH 243
Query: 347 LESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAW 406
+ F + P + + D+T + +A+
Sbjct: 244 TQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAAN----LDHTYYCVAF 299
Query: 407 HPIGYLLCSGSNDHTTKFW 425
G L G + +
Sbjct: 300 DKKGDKLYLGGTFNDLAVF 318
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 53.6 bits (127), Expect = 3e-08
Identities = 17/224 (7%), Positives = 48/224 (21%), Gaps = 8/224 (3%)
Query: 88 VVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSFAAKFVHTSLNKNRCSI 147
R+ L+ A V P + +
Sbjct: 105 ATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPD 164
Query: 148 NRVLWTPTGRRLIT-----GSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMV 202
+ TG+ + ++ G + + + +
Sbjct: 165 IYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPA 224
Query: 203 SGDDGGAIKYWQNNMNNVKANKSA-HKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQ 261
+ D + A E D + + +D + +
Sbjct: 225 TADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNR-LAKYDLKQRK 283
Query: 262 EERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGREL 305
++ V + L GG + + +++ + ++
Sbjct: 284 LIKAA-NLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKV 326
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 48.6 bits (114), Expect = 1e-06
Identities = 10/114 (8%), Positives = 30/114 (26%), Gaps = 6/114 (5%)
Query: 318 VKWNQNGNWVLTASKDQIIKLYDIRAMKELESFR-GHRKDVTALAWHPFHEEYFVSGSLD 376
+++ + + + D+ + +S + P + +V +
Sbjct: 2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHY 61
Query: 377 GSIFHW-----LVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFW 425
G I+ + +++ A P G + + N
Sbjct: 62 GDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLND 115
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 46.7 bits (109), Expect = 6e-06
Identities = 12/161 (7%), Positives = 32/161 (19%), Gaps = 8/161 (4%)
Query: 278 WHPTKSLLVSGGKDSLVKLWDAKSGRELCSF-HGHKNMVLCVKWNQNGNWVL-TASKDQI 335
++ + + + D S S K + +
Sbjct: 4 LKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGD 63
Query: 336 IKLYDIRAMKEL------ESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETP 389
I D+ K + + + A P +E + + + + V
Sbjct: 64 IYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPR 123
Query: 390 QVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRP 430
+ P+ + +
Sbjct: 124 LEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPD 164
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 44.3 bits (103), Expect = 3e-05
Identities = 11/231 (4%), Positives = 50/231 (21%), Gaps = 3/231 (1%)
Query: 42 ASSSTLNPPEFHHLPSNPPYDAHGDSFAAKRMRKLTQRRAVDYTSTVVRYMQIRMWQRDS 101
++ H PP + + + + ++
Sbjct: 104 YATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGP 163
Query: 102 RDRTVLQATPA--AAIDMLPTVAYTDNPSTSFAAKFVHTSLNKNRCSINRVLWTPTGRRL 159
+ T A+ + + + ++ + +
Sbjct: 164 DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDP 223
Query: 160 ITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNN 219
T + + ++ A + + + +
Sbjct: 224 ATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRK 283
Query: 220 VKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHG 270
+ + + ++F + K + V++ ++ +++ G
Sbjct: 284 LIKAAN-LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLPG 333
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 66.9 bits (161), Expect = 1e-12
Identities = 37/283 (13%), Positives = 75/283 (26%), Gaps = 4/283 (1%)
Query: 146 SINRVLWTPTGRRLITGSQSGEFTLWNGQS-FNFEMILQAHDHAIRSMVWSHNDNWMVSG 204
+I + + G+ L + G W+ + + + H I + + +
Sbjct: 14 AITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVS 73
Query: 205 DDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEER 264
D + A+K S + L + + + E
Sbjct: 74 WDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEV 133
Query: 265 SLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNG 324
++ + V + ++ K + KL A H + + N
Sbjct: 134 PISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAF 193
Query: 325 NWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLV 384
S+ I + A +GSLD S+ W +
Sbjct: 194 LVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNM 253
Query: 385 --GHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFW 425
+ P + ++V + W + S D KFW
Sbjct: 254 NKPSDHPIIIKGAHAMSSVNSVIWLN-ETTIVSAGQDSNIKFW 295
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 60.4 bits (144), Expect = 2e-10
Identities = 32/253 (12%), Positives = 71/253 (28%), Gaps = 2/253 (0%)
Query: 181 ILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQ-NNMNNVKANKSAHKESVRDLSFCRT 239
+ H+ AI ++ S + + S D G I W + + + H + +
Sbjct: 7 VRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSK 66
Query: 240 DLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDA 299
+ S D +KV + S + +
Sbjct: 67 G-DLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIY 125
Query: 300 KSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTA 359
G+ + + + + ++ V + ++ E+++ + +
Sbjct: 126 SHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSV 185
Query: 360 LAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSND 419
+ S + E H V ++W P L +GS D
Sbjct: 186 AFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLD 245
Query: 420 HTTKFWCRNRPGD 432
++ W N+P D
Sbjct: 246 NSVIVWNMNKPSD 258
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 60.0 bits (143), Expect = 2e-10
Identities = 20/197 (10%), Positives = 48/197 (24%), Gaps = 1/197 (0%)
Query: 263 ERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSF-HGHKNMVLCVKWN 321
++ GH + ++ L S + + WD +G F H M+ +K
Sbjct: 5 DQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTT 64
Query: 322 QNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFH 381
G+ + D + + + + ++ L + + I
Sbjct: 65 SKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAI 124
Query: 382 WLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGDTARDKFNMG 441
+ G T +N + + S + + +
Sbjct: 125 YSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITS 184
Query: 442 QNQGYGEQNAVFAGRMP 458
V +
Sbjct: 185 VAFSNNGAFLVATDQSR 201
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 51.5 bits (121), Expect = 1e-07
Identities = 22/221 (9%), Positives = 55/221 (24%), Gaps = 4/221 (1%)
Query: 227 HKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLT-GHGWDVKSVDWHPTKSLL 285
H +++ LS S + + WD + R H + + L
Sbjct: 11 HNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLF 70
Query: 286 VSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMK 345
D L + SG + +K + + + + +
Sbjct: 71 TVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKL 130
Query: 346 ELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLA 405
+ + + +A + V G + L G +V+
Sbjct: 131 ---TEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAF 187
Query: 406 WHPIGYLLCSGSNDHTTKFWCRNRPGDTARDKFNMGQNQGY 446
+ +L+ + + + N + + +
Sbjct: 188 SNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVA 228
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 48.8 bits (114), Expect = 9e-07
Identities = 20/103 (19%), Positives = 34/103 (33%), Gaps = 1/103 (0%)
Query: 345 KELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDL 404
+ GH K +TAL+ + S +G I W + +VH + +
Sbjct: 3 SIDQVRYGHNKAITALSSSA-DGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGI 61
Query: 405 AWHPIGYLLCSGSNDHTTKFWCRNRPGDTARDKFNMGQNQGYG 447
G L +DH D+++ N +Q G
Sbjct: 62 KTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLG 104
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 47.7 bits (111), Expect = 2e-06
Identities = 22/131 (16%), Positives = 45/131 (34%), Gaps = 4/131 (3%)
Query: 171 WNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKES 230
S ++ A ++ N + + H
Sbjct: 167 GASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAK 226
Query: 231 VRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLT---GHGWDVKSVDWHPTKSLLVS 287
V +S+ +++ + S D +V VW+ + + + V SV W ++ +VS
Sbjct: 227 VACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLN-ETTIVS 285
Query: 288 GGKDSLVKLWD 298
G+DS +K W+
Sbjct: 286 AGQDSNIKFWN 296
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 46.9 bits (109), Expect = 4e-06
Identities = 22/150 (14%), Positives = 39/150 (26%), Gaps = 2/150 (1%)
Query: 194 WSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVK 253
+ A SV + +
Sbjct: 148 KQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYS 207
Query: 254 VWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELC--SFHGH 311
V + S T H V V W P L +G D+ V +W+ + H
Sbjct: 208 VANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAH 267
Query: 312 KNMVLCVKWNQNGNWVLTASKDQIIKLYDI 341
+ N +++A +D IK +++
Sbjct: 268 AMSSVNSVIWLNETTIVSAGQDSNIKFWNV 297
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 66.8 bits (161), Expect = 2e-12
Identities = 44/285 (15%), Positives = 76/285 (26%), Gaps = 12/285 (4%)
Query: 152 WTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIK 211
TP G ++ + + + S I H H S + + SGD G ++
Sbjct: 25 NTPAGDKIQYCNGTSVY-TVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVR 83
Query: 212 YWQNNMNNVKANK-----SAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSL 266
W S + + S + +
Sbjct: 84 IWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLT 143
Query: 267 TGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNW 326
++SG D+ V +++ + +F H V V++N +G+
Sbjct: 144 GQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSL 203
Query: 327 VLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFH------EEYFVSGSLDGSIF 380
+ D I LY+ + F A + F S S D +I
Sbjct: 204 FASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIK 263
Query: 381 HWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFW 425
W V + I L L S S + F
Sbjct: 264 IWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFV 308
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 62.6 bits (150), Expect = 4e-11
Identities = 41/249 (16%), Positives = 84/249 (33%), Gaps = 12/249 (4%)
Query: 146 SINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDH-----AIRSMVWSHNDNW 200
+P+G +G G +W+ + I S
Sbjct: 60 QTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAA 119
Query: 201 MVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARC 260
+ G + + + + + + S SDD TV +++
Sbjct: 120 VGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPF 179
Query: 261 QEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGREL-------CSFHGHKN 313
+ + + H V SV ++P SL S G D + L++ G + H
Sbjct: 180 KFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSG 239
Query: 314 MVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSG 373
V + W+ +G + +AS D+ IK++++ +K ++ + + ++ VS
Sbjct: 240 SVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSI 299
Query: 374 SLDGSIFHW 382
S +G I
Sbjct: 300 SANGFINFV 308
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 53.4 bits (126), Expect = 3e-08
Identities = 14/172 (8%), Positives = 41/172 (23%), Gaps = 1/172 (0%)
Query: 171 WNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKES 230
+ + R + G +++ + + +
Sbjct: 139 NGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYN 198
Query: 231 VRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGK 290
F T + + H V + W P + + S
Sbjct: 199 PDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASA 258
Query: 291 DSLVKLWDAKSGRELCSFHGHKNM-VLCVKWNQNGNWVLTASKDQIIKLYDI 341
D +K+W+ + + + + + +++ S + I +
Sbjct: 259 DKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNP 310
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 52.6 bits (124), Expect = 6e-08
Identities = 14/158 (8%), Positives = 36/158 (22%), Gaps = 3/158 (1%)
Query: 273 VKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASK 332
+ P + S V S + + H + K + +G + +
Sbjct: 20 AVVLGNTPAGDKIQYCNGTS-VYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDV 78
Query: 333 DQIIKLY--DIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQ 390
++++ + V ++W + G H +
Sbjct: 79 HGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTS 138
Query: 391 VEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRN 428
+ + + P +D T
Sbjct: 139 NGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEG 176
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 45.3 bits (105), Expect = 2e-05
Identities = 25/234 (10%), Positives = 50/234 (21%), Gaps = 4/234 (1%)
Query: 231 VRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGK 290
L K C+ + V + T H P+ SG
Sbjct: 20 AVVLGNTPAGDKIQYCNGTS-VYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDV 78
Query: 291 DSLVKLWDAKSGRELCSFHG---HKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKEL 347
V++WD + + +++ + +
Sbjct: 79 HGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTS 138
Query: 348 ESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWH 407
+ + + D + G H V + ++
Sbjct: 139 NGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYN 198
Query: 408 PIGYLLCSGSNDHTTKFWCRNRPGDTARDKFNMGQNQGYGEQNAVFAGRMPGNF 461
P G L S D T + T + + +N + G
Sbjct: 199 PDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTK 252
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 66.4 bits (161), Expect = 4e-12
Identities = 28/226 (12%), Positives = 60/226 (26%), Gaps = 20/226 (8%)
Query: 240 DLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDA 299
+L + D + + D + + + L G+ V + L G+D V + D
Sbjct: 32 NLFSVTLRDAGQIALIDGSTYEIKTVLDT-GYAVHISRLSASGRYLFVIGRDGKVNMIDL 90
Query: 300 KSGR-----ELCSFHGHKNMVLCVKWNQNGNWVL-TASKDQIIKLYDIRAMKELESFRGH 353
E+ +++ + + A + D ++ +
Sbjct: 91 WMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTR 150
Query: 354 RKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNT------------V 401
+HP + S F V ET ++ + + D +
Sbjct: 151 GMTYDEQEYHPEPRVAAILASHYRPEFIVNVK-ETGKILLVDYTDLNNLKTTEISAERFL 209
Query: 402 WDLAWHPIGYLLCSGSNDHTTKFWCRNRPGDTARDKFNMGQNQGYG 447
D + +N + G + GQ G
Sbjct: 210 HDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPG 255
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 45.6 bits (107), Expect = 2e-05
Identities = 19/213 (8%), Positives = 54/213 (25%), Gaps = 18/213 (8%)
Query: 150 VLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGA 209
+ R IT + + + + ++ N G
Sbjct: 212 GGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWAT 271
Query: 210 IKYWQNNMNNVKANKSAHKE---SVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSL 266
+++ + + H + + D + + ++ + +L
Sbjct: 272 SHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYV------DATL 325
Query: 267 TGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNW 326
SV + G D K + V+ ++N++G
Sbjct: 326 NPEAEISGSVA-VFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPR---VVQGEFNKDGTE 381
Query: 327 VL-----TASKDQIIKLYDIRAMKELESFRGHR 354
V ++ + + D + ++ + R
Sbjct: 382 VWFSVWNGKDQESALVVVDDKTLELKHVIKDER 414
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 63.0 bits (152), Expect = 4e-11
Identities = 24/193 (12%), Positives = 59/193 (30%), Gaps = 8/193 (4%)
Query: 239 TDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWD 298
+L + D + + D + + + V + L+ G+D+ + + D
Sbjct: 31 PNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMID 89
Query: 299 AKSGR-----ELCSFHGHKNMVLCVKWNQNGNWVLTAS-KDQIIKLYDIRAMKELESFRG 352
+ E+ +++ + + + + D ++ +
Sbjct: 90 LWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVST 149
Query: 353 HRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYL 412
V +HP + S + F V ET +V + N D +
Sbjct: 150 RGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVK-ETGKVLLVNYKDIDNLTVTSIGAAPF 208
Query: 413 LCSGSNDHTTKFW 425
L G D + +++
Sbjct: 209 LADGGWDSSHRYF 221
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 41.5 bits (96), Expect = 3e-04
Identities = 27/271 (9%), Positives = 61/271 (22%), Gaps = 38/271 (14%)
Query: 150 VLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQ-----AHDHAIRSMVWSHNDNWM-VS 203
+ +GR L+ + + + + + + S + D +
Sbjct: 67 SRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAG 126
Query: 204 GDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRT----------DLKFCSCSDDTTVK 253
K S +V ++ + + T K
Sbjct: 127 AYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGK 186
Query: 254 VWDFAR---CQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRE---LCS 307
V + G + W + ++ +S R L
Sbjct: 187 VLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVD 246
Query: 308 FHGHKNMVLCVKWNQNGN---WVLTASKDQII-------KLYDIRAMKELESFRGHRKDV 357
+ + W + D I K + A K++ +G
Sbjct: 247 VGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGS 306
Query: 358 TALAWHPFHEEYFV------SGSLDGSIFHW 382
+ HP +V + S+ +
Sbjct: 307 LFIKTHPKSSHLYVDTTFNPDARISQSVAVF 337
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 41.1 bits (95), Expect = 3e-04
Identities = 23/219 (10%), Positives = 53/219 (24%), Gaps = 34/219 (15%)
Query: 170 LWNGQSFNFEMILQAHDHAIRSMVWSHNDN-WMVSGDDGGAIKYWQNNMNNVKANKSAHK 228
+ N + + W + +M + ++ + + + A K
Sbjct: 190 VNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGK 249
Query: 229 ESVRDLSFCRTDLKFCSC------------SDDTTVKVWDFARCQEERSLTGHGWDVKSV 276
K+ T K ++ L G G +
Sbjct: 250 TPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFI 309
Query: 277 DWHPTK-------SLLVSGGKDSLVKLWDAKSGRELCSFHGHKNM---------VLCVKW 320
HP + V ++D K+ V+ ++
Sbjct: 310 KTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEY 369
Query: 321 NQNGNWVL-----TASKDQIIKLYDIRAMKELESFRGHR 354
N+ G+ V + + + D + +K + R
Sbjct: 370 NKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKDPR 408
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 61.1 bits (146), Expect = 1e-10
Identities = 37/308 (12%), Positives = 82/308 (26%), Gaps = 27/308 (8%)
Query: 144 RCSINRVLWTPTGRRLITGSQSGEF-TLWNGQSFNFEMILQAHDH---AIRSMVWS--HN 197
R + + PT + F + ++Q H + ++ +S
Sbjct: 17 RNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKG 76
Query: 198 DNWMVSGDDGGAIKYWQNN--------MNNVKANKSAHKESVRDLSFCRTDLKF--CSCS 247
++ SGD+ G + W NVK+ + D+S+ +
Sbjct: 77 SQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEG 136
Query: 248 DDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVK----LWDAKSGR 303
D + ++GH + + ++ + D K
Sbjct: 137 RDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSA 196
Query: 304 ELCSFHGHKNMVLCVKWNQ---NGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTAL 360
+ H + V V+++ + + + +
Sbjct: 197 SDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIF 256
Query: 361 AWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAW---HPIGYLLCSGS 417
A + F + D +I W V V+ + + + + S S
Sbjct: 257 ALSWLDSQKFATVGADATIRVWDVTTSKC-VQKWTLDKQQLGNQQVGVVATGNGRIISLS 315
Query: 418 NDHTTKFW 425
D T F+
Sbjct: 316 LDGTLNFY 323
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 56.5 bits (134), Expect = 4e-09
Identities = 19/210 (9%), Positives = 49/210 (23%), Gaps = 13/210 (6%)
Query: 145 CSINRVLWTPTGRRLITGSQSGEFTL--WNGQSFNFEMILQAHDHAIRSMVWSHNDNWMV 202
I+ + W GRRL + + + S N + H I + +
Sbjct: 116 GPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRS 175
Query: 203 SGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFC--------RTDLKFCSCSDDTTVKV 254
+ + + S +
Sbjct: 176 MTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDG 235
Query: 255 WDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNM 314
+ + G D+ +++WD + + + + K
Sbjct: 236 KSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQ 295
Query: 315 VLCVKWN---QNGNWVLTASKDQIIKLYDI 341
+ + +++ S D + Y++
Sbjct: 296 LGNQQVGVVATGNGRIISLSLDGTLNFYEL 325
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 52.2 bits (123), Expect = 8e-08
Identities = 22/142 (15%), Positives = 43/142 (30%), Gaps = 12/142 (8%)
Query: 311 HKNMVLCVKWNQNGNWVLTAS-KDQIIKLYDIRAMK--ELESFRGHRKD-VTALAWHPFH 366
+N + ++ N + K ++ D K + F GH VT + + P
Sbjct: 16 QRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIK 75
Query: 367 E-EYFVSGSLDGSIFHWLVGHETPQVEI-------HNVHDNTVWDLAWHPIGYLLCSGSN 418
+Y SG G + W + + V + D++W G LC
Sbjct: 76 GSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGE 135
Query: 419 DHTTKFWCRNRPGDTARDKFNM 440
+ + + +
Sbjct: 136 GRDNFGVFISWDSGNSLGEVSG 157
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 49.9 bits (117), Expect = 4e-07
Identities = 22/185 (11%), Positives = 55/185 (29%), Gaps = 15/185 (8%)
Query: 273 VKSVDWHPTKSLLVSG-GKDSLVKLWDAKSGR--ELCSFHGH-KNMVLCVKW--NQNGNW 326
+ + PT + + GK + V+ D + + F GH ++V VK+ + +
Sbjct: 20 TTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQY 79
Query: 327 VLTASKDQIIKLYDIRA--------MKELESFRGHRKDVTALAWHP-FHEEYFVSGSLDG 377
+ + + + ++ + F+ ++ ++W V D
Sbjct: 80 LCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDN 139
Query: 378 SIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGDTARDK 437
E+ + +D + F+ +A D+
Sbjct: 140 FGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDR 199
Query: 438 FNMGQ 442
+ Q
Sbjct: 200 THHKQ 204
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 51.7 bits (122), Expect = 2e-07
Identities = 24/280 (8%), Positives = 60/280 (21%), Gaps = 16/280 (5%)
Query: 150 VLWTPTGRRL-ITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGG 208
+ P GR T ++S + + + R +S D
Sbjct: 39 PMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAA---LSPDGKT 95
Query: 209 AIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTG 268
Y + + + + K + A ++ L G
Sbjct: 96 LAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQ----ITMLAWARDGSKLYG 151
Query: 269 HGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRE--LCSFHGHKNMVLCVKWNQNGNW 326
G D+ +D + + + + ++ +
Sbjct: 152 LGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDP 211
Query: 327 VLTASKDQIIKLYDIRAMK-ELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVG 385
+ + D+ + + R + A +P F
Sbjct: 212 ADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAF-----GAYNVLESFD 266
Query: 386 HETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFW 425
E ++ + + G + G +
Sbjct: 267 LEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAY 306
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 49.4 bits (116), Expect = 8e-07
Identities = 19/254 (7%), Positives = 56/254 (22%), Gaps = 14/254 (5%)
Query: 53 HHLPSNPPYDAHGDSFAAKRMRKLTQRRAVDYTSTVVRYMQIRMWQRDSRDRTVLQATPA 112
P G + + V T R+ D+ + +A A
Sbjct: 74 LSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA 133
Query: 113 AAIDMLPTVAYTDNPSTSFAAKFVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWN 172
+ +A+ + S + ++ ++ +
Sbjct: 134 --PRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQ 191
Query: 173 GQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANK-SAHKESV 231
+S + + + + +
Sbjct: 192 HESSGVMATP--------FYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFY 243
Query: 232 RDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKD 291
+ + ++ +D + + + SV+ S + GG
Sbjct: 244 FSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRV-PLPHSYYSVNVSTDGSTVWLGGAL 300
Query: 292 SLVKLWDAKSGREL 305
+ +DA++ +
Sbjct: 301 GDLAAYDAETLEKK 314
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 49.0 bits (115), Expect = 1e-06
Identities = 18/164 (10%), Positives = 37/164 (22%), Gaps = 17/164 (10%)
Query: 282 KSLLVSGGKDSLVKLWDAKSGREL--CSFHGHKNMVLCVKWNQNGNWVL-TASKDQIIKL 338
+ +++ + + + D + + + G T +K + +
Sbjct: 1 RDYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVK 60
Query: 339 YDIRAMKELESFRGHR--------------KDVTALAWHPFHEEYFVSGSLDGSIFHWLV 384
D+ + L D LA + ++ L
Sbjct: 61 IDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALY 120
Query: 385 GHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRN 428
ET + LAW G L D
Sbjct: 121 DAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAG 164
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Score = 50.6 bits (119), Expect = 3e-07
Identities = 25/268 (9%), Positives = 66/268 (24%), Gaps = 4/268 (1%)
Query: 160 ITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWM-VSGDDGGAIKYWQNNMN 218
I S+S ++ + S + + V S + + V+ + +
Sbjct: 6 IANSESDNISVIDVTSNKVTATIPVGSNP-MGAVISPDGTKVYVANAHSNDVSII-DTAT 63
Query: 219 NVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDW 278
N S + ++ + + ++ G +
Sbjct: 64 NNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLAL 123
Query: 279 HPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKL 338
P L + + + + +G V A+ D +
Sbjct: 124 SPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSIS 183
Query: 339 YDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHD 398
+ + +A +P + +V+ ++ T ++
Sbjct: 184 VIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVG 243
Query: 399 NTVWDLAWHPIG-YLLCSGSNDHTTKFW 425
+A P G + + S +T
Sbjct: 244 PDPAGIAVTPDGKKVYVALSFCNTVSVI 271
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Score = 42.6 bits (98), Expect = 1e-04
Identities = 14/189 (7%), Positives = 43/189 (22%), Gaps = 2/189 (1%)
Query: 243 FCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPT-KSLLVSGGKDSLVKLWDAKS 301
+ + S+ + V D + ++ + P + V+ + V + D +
Sbjct: 5 YIANSESDNISVIDVTSNKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTAT 63
Query: 302 GRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALA 361
+ + + +T + + D + + + + +
Sbjct: 64 NNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLAL 123
Query: 362 WHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHT 421
+ Y + V + Y+ S +
Sbjct: 124 SPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSIS 183
Query: 422 TKFWCRNRP 430
N
Sbjct: 184 VIDTVTNSV 192
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 49.0 bits (115), Expect = 1e-06
Identities = 25/170 (14%), Positives = 49/170 (28%), Gaps = 27/170 (15%)
Query: 146 SINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMIL--QAHDHAIRSMVWSHNDNWMVS 203
IN ++ RL+ + +G+ + S + + + +A A R+ W V+
Sbjct: 196 LINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVA 255
Query: 204 GDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEE 263
Y + + + V V D +
Sbjct: 256 YHRALDRIYLLVDQRDEWR----------------------HKTASRFVVVLDAKTGERL 293
Query: 264 RSLTGHGWDVKSVDWHP--TKSLLVSGGKDSLVKLWDAKSGRELCSFHGH 311
+ S++ L D + + DA+SG EL S +
Sbjct: 294 AKFEMGHE-IDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQL 342
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 41.7 bits (96), Expect = 2e-04
Identities = 18/189 (9%), Positives = 44/189 (23%), Gaps = 5/189 (2%)
Query: 95 RMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSFAAKFVHTSLNKNRCSINRVLWTP 154
+ + + T + A + V + I+ +
Sbjct: 169 SLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDL--SSG 226
Query: 155 TGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQ 214
+ L E +G + H R + + +
Sbjct: 227 DAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLD 286
Query: 215 NNMNNVKANKSAHKESVRDLSFCR--TDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWD 272
A + ++ + L + + D T+ + D +E RS+ G
Sbjct: 287 AKTGERLAKFEMGH-EIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHG 345
Query: 273 VKSVDWHPT 281
+ +
Sbjct: 346 PQVITTADM 354
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 46.5 bits (109), Expect = 7e-06
Identities = 20/233 (8%), Positives = 57/233 (24%), Gaps = 32/233 (13%)
Query: 150 VLWTPTGRRL-ITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGG 208
+ + L S + + Q A + G
Sbjct: 129 IGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASCFHIHPGAAATHYLGSCPA 185
Query: 209 AIKYWQNNMNNVKAN------KSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQE 262
++ A A S + + + + A
Sbjct: 186 SLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATM 245
Query: 263 ERSLTGHGWDVKSVDWHPTKSLLVSGGKDS-------------------LVKLWDAKSGR 303
+ ++ G+ K+ ++ +V+ K++ A G+
Sbjct: 246 KAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQ 305
Query: 304 ELCSFHGHKNMVLCVKWNQNGNWVL--TASKDQIIKLYDIRAMKELESFRGHR 354
+ + + Q+G ++ +++ +YD + ++ S +
Sbjct: 306 TSGPI-SNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDK 357
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 46.1 bits (108), Expect = 8e-06
Identities = 14/206 (6%), Positives = 39/206 (18%), Gaps = 23/206 (11%)
Query: 247 SDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHP--------TKSLLVSGGKDSLVKLWD 298
V+V+D + SV + LL S
Sbjct: 93 KRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLS 152
Query: 299 AKSGREL-------CSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFR 351
+ C + + + + A +
Sbjct: 153 VPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGA----QCTG 208
Query: 352 GHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIH-NVHDNTVWDLAWHPIG 410
A + + SI + ++ + +++ + G
Sbjct: 209 AQNCSSQAAQANYPGMLVWAV---ASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAG 265
Query: 411 YLLCSGSNDHTTKFWCRNRPGDTARD 436
+ + + + +
Sbjct: 266 FQMVAKLKNTDGIMILTVEHSRSCLA 291
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 44.2 bits (103), Expect = 3e-05
Identities = 14/188 (7%), Positives = 42/188 (22%), Gaps = 26/188 (13%)
Query: 120 TVAYTDNPSTSFAAKFVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFE 179
A + + A CS G + + S +
Sbjct: 187 LAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMK 246
Query: 180 MILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRT 239
+ ++ ++ + MV+ ++
Sbjct: 247 AAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCL---------------- 290
Query: 240 DLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHP--TKSLLVSGGKDSLVKLW 297
+ + Q ++ +G D ++ + ++ ++
Sbjct: 291 -------AAAENTSSVTASVGQTSGPIS-NGHDSDAIIAAQDGASDNYANSAGTEVLDIY 342
Query: 298 DAKSGREL 305
DA S ++
Sbjct: 343 DAASDQDQ 350
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Score = 39.4 bits (90), Expect = 0.001
Identities = 16/226 (7%), Positives = 49/226 (21%), Gaps = 6/226 (2%)
Query: 243 FCSCSDDTTVKVWDFAR--CQEERSLTGHGWDVKSVDWHPT-KSLLVSGGKDSLVKLWDA 299
+ + + + VW+ + V+ + P + L V + V +
Sbjct: 7 YIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRI 66
Query: 300 KSGRELCSFHGHK---NMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKD 356
+F + + + G +V S + +
Sbjct: 67 APDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEG 126
Query: 357 VTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSG 416
+ + + + + V + +++
Sbjct: 127 LDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHP 186
Query: 417 SNDHTTKFWCRNRPGDTARDKFNMGQNQGYGEQNAVFAGRMPGNFP 462
+ + N D K G + + + +
Sbjct: 187 NEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWA 232
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 715 | |||
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 100.0 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 100.0 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.98 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.97 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.97 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.97 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.97 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 99.96 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.96 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.95 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.95 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.95 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.95 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.92 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.92 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.92 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.91 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.9 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.9 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.89 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.88 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.87 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.86 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.85 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.84 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.81 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.78 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.77 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.73 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.71 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.61 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.59 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.56 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.54 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.5 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.33 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 99.29 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 99.29 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 99.28 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.26 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 99.23 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.21 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 99.2 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.2 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 99.19 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 99.18 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 99.17 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.16 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 99.15 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 99.08 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 99.08 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 99.02 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.86 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.69 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 98.55 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 98.48 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 98.47 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 98.43 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 98.34 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 98.27 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 98.27 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 98.26 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 98.2 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 98.19 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 98.17 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 98.17 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 98.09 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 98.08 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 98.05 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 98.04 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 98.03 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 98.02 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.95 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 97.89 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 97.86 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 97.71 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 97.64 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 97.51 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 97.18 | |
| d2hu7a1 | 313 | Acylamino-acid-releasing enzyme, N-terminal donain | 97.18 | |
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 97.03 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 97.03 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 96.83 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 96.8 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 96.79 | |
| d1jtdb_ | 273 | beta-lactamase inhibitor protein-II, BLIP-II {Stre | 96.75 | |
| d1wp5a_ | 323 | Topoisomerase IV subunit A, ParC, C-terminal domai | 96.65 | |
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 96.56 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 96.47 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 96.42 | |
| d1wp5a_ | 323 | Topoisomerase IV subunit A, ParC, C-terminal domai | 96.39 | |
| d1jtdb_ | 273 | beta-lactamase inhibitor protein-II, BLIP-II {Stre | 96.33 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 96.28 | |
| d2hu7a1 | 313 | Acylamino-acid-releasing enzyme, N-terminal donain | 96.03 | |
| d1suua_ | 304 | DNA gyrase A C-terminal domain {Lyme disease spiro | 90.79 | |
| d1a12a_ | 401 | Regulator of chromosome condensation RCC1 {Human ( | 89.37 | |
| d1a12a_ | 401 | Regulator of chromosome condensation RCC1 {Human ( | 89.09 | |
| d1suua_ | 304 | DNA gyrase A C-terminal domain {Lyme disease spiro | 87.18 | |
| d1co6a_ | 107 | Cytochrome c2 {Rhodopseudomonas viridis [TaxId: 10 | 80.63 |
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=4.3e-41 Score=346.37 Aligned_cols=286 Identities=23% Similarity=0.427 Sum_probs=271.7
Q ss_pred ecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 005096 139 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN 218 (715)
Q Consensus 139 ~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~ 218 (715)
.|++|++.|++|+|++++++||+|+.||+|+|||+++++.+..+..|...|.+++|++++.+++++..++.+.+|+....
T Consensus 12 ~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (317)
T d1vyhc1 12 ALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGF 91 (317)
T ss_dssp EEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSS
T ss_pred EEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeeccccccccccccccccccccccc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEE
Q 005096 219 NVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWD 298 (715)
Q Consensus 219 ~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwD 298 (715)
+....+..|...+.++.|+++++.+++++.|+.+++||+++++.+..+..|...+.+++|++++++|++++.|+.|++||
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~ 171 (317)
T d1vyhc1 92 ECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWV 171 (317)
T ss_dssp CEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred ccccccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeCCCeEEEEe
Confidence 98888899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeEEeccCCCceEEEEEcCC--------------------CCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeE
Q 005096 299 AKSGRELCSFHGHKNMVLCVKWNQN--------------------GNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVT 358 (715)
Q Consensus 299 l~s~~~~~~~~~~~~~I~sl~~spd--------------------g~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~ 358 (715)
+++++.+..+..+...+.+++|+++ +.++++++.|+.|++||+++++.+.++.+|...|.
T Consensus 172 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~ 251 (317)
T d1vyhc1 172 VATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVR 251 (317)
T ss_dssp TTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEE
T ss_pred eccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCCCCCEE
Confidence 9999999999999999999998865 35789999999999999999999999999999999
Q ss_pred EEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEe
Q 005096 359 ALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWC 426 (715)
Q Consensus 359 ~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWd 426 (715)
+++|++ ++++|++++.||.|+|||+.+.+.+. .+..|.+.|++++|++++++|++++.||+|+|||
T Consensus 252 ~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 252 GVLFHS-GGKFILSCADDKTLRVWDYKNKRCMK-TLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317 (317)
T ss_dssp EEEECS-SSSCEEEEETTTEEEEECCTTSCCCE-EEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred EEEECC-CCCEEEEEECCCeEEEEECCCCcEEE-EEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence 999999 88999999999999999998876654 4557999999999999999999999999999997
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.9e-40 Score=349.37 Aligned_cols=280 Identities=18% Similarity=0.307 Sum_probs=254.3
Q ss_pred CCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce-----EEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 005096 142 KNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNF-----EMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNN 216 (715)
Q Consensus 142 ~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~-----~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~ 216 (715)
.|...|+||+|+++|++|++|+ ||.|+|||+.+.+. ......|++.|.+++|++|+++|++++.||.|+|||+.
T Consensus 49 ~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~ 127 (337)
T d1gxra_ 49 NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLA 127 (337)
T ss_dssp CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECC
T ss_pred CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeeccccccccccc
Confidence 7999999999999999999987 89999999876432 23345788999999999999999999999999999987
Q ss_pred CC--ceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcE
Q 005096 217 MN--NVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLV 294 (715)
Q Consensus 217 ~~--~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I 294 (715)
.. +....+..|...|.+++|++++.+|++++.|+.|++||+.+++.......|...|.+++|+++++.+++++.|+.|
T Consensus 128 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v 207 (337)
T d1gxra_ 128 APTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTV 207 (337)
T ss_dssp CC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 54 4566677899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEe
Q 005096 295 KLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGS 374 (715)
Q Consensus 295 ~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs 374 (715)
++||+++++.+..+. +...|.+++|++++++|++++.|+.|++||+++.+.. ....|...|++++|++ ++++|++++
T Consensus 208 ~i~d~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-~~~~~~~~i~~v~~s~-~g~~l~s~s 284 (337)
T d1gxra_ 208 RSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHLHESCVLSLKFAY-CGKWFVSTG 284 (337)
T ss_dssp EEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EECCCSSCEEEEEECT-TSSEEEEEE
T ss_pred cccccccceeecccc-cccceEEEEEcccccccceeccccccccccccccccc-cccccccccceEEECC-CCCEEEEEe
Confidence 999999998887775 7889999999999999999999999999999988765 4567899999999999 889999999
Q ss_pred CCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEec
Q 005096 375 LDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCR 427 (715)
Q Consensus 375 ~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl 427 (715)
.||.|++||+.++..+... .|.+.|++++|++++++|++++.||+|+|||+
T Consensus 285 ~Dg~i~iwd~~~~~~~~~~--~~~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl 335 (337)
T d1gxra_ 285 KDNLLNAWRTPYGASIFQS--KESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp TTSEEEEEETTTCCEEEEE--ECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred CCCeEEEEECCCCCEEEEc--cCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence 9999999999888766543 47889999999999999999999999999997
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=8.7e-39 Score=342.91 Aligned_cols=285 Identities=22% Similarity=0.395 Sum_probs=248.9
Q ss_pred CCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEe------------------ccCCCEEEEEEcCCCCEEEE
Q 005096 142 KNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQ------------------AHDHAIRSMVWSHNDNWMVS 203 (715)
Q Consensus 142 ~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~------------------~h~~~V~~l~~spdg~~L~t 203 (715)
+|++.|+||+|++||++||+|+ |++|+|||+.+++.+..+. .|...|++|+|++++++|++
T Consensus 60 ~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s 138 (388)
T d1erja_ 60 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT 138 (388)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred CCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCccee
Confidence 6999999999999999999986 8999999999988777654 35567999999999999999
Q ss_pred EeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCC
Q 005096 204 GDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKS 283 (715)
Q Consensus 204 gs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~ 283 (715)
|+.||.|++||...++.......|...|.++++++++..+++++.++.|++||+++.........+...+..+.+..+++
T Consensus 139 ~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (388)
T d1erja_ 139 GAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGK 218 (388)
T ss_dssp EETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCC
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccceeeeeeeccccccccccccccccccccccCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999888887776665555555556889
Q ss_pred EEEEEeCCCcEEEEECCCCceeEEec-------cCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeE----------
Q 005096 284 LLVSGGKDSLVKLWDAKSGRELCSFH-------GHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKE---------- 346 (715)
Q Consensus 284 ~L~sgs~Dg~I~iwDl~s~~~~~~~~-------~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~---------- 346 (715)
+|++++.|+.|++||+++++.+..+. +|...|++++|++++++|++++.|+.|++||+++++.
T Consensus 219 ~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~ 298 (388)
T d1erja_ 219 YIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSG 298 (388)
T ss_dssp EEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------
T ss_pred eEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCcccccccccccc
Confidence 99999999999999999988776653 5778899999999999999999999999999976543
Q ss_pred --EEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEE------cCCCCEEEEEEC
Q 005096 347 --LESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAW------HPIGYLLCSGSN 418 (715)
Q Consensus 347 --~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~------spdg~~L~sgs~ 418 (715)
......|...|++++|++ ++++|++|+.||.|++||+++++.+. .+.+|.+.|+++++ ++++.+|++|+.
T Consensus 299 ~~~~~~~~~~~~v~~~~~s~-~~~~l~sg~~dg~i~vwd~~~~~~~~-~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s~ 376 (388)
T d1erja_ 299 TCEVTYIGHKDFVLSVATTQ-NDEYILSGSKDRGVLFWDKKSGNPLL-MLQGHRNSVISVAVANGSSLGPEYNVFATGSG 376 (388)
T ss_dssp CEEEEEECCSSCEEEEEECG-GGCEEEEEETTSEEEEEETTTCCEEE-EEECCSSCEEEEEECSSCTTCTTCEEEEEEET
T ss_pred ceeeecccccceEEEEEECC-CCCEEEEEeCCCEEEEEECCCCcEEE-EEeCCCCCEEEEEEecCcccCCCCCEEEEEeC
Confidence 344567889999999999 88999999999999999998876654 45579999999986 568899999999
Q ss_pred CCeEEEEecCC
Q 005096 419 DHTTKFWCRNR 429 (715)
Q Consensus 419 Dg~I~iWdl~~ 429 (715)
||+|+||++++
T Consensus 377 Dg~I~iW~~~k 387 (388)
T d1erja_ 377 DCKARIWKYKK 387 (388)
T ss_dssp TSEEEEEEEEE
T ss_pred CCEEEEEeeee
Confidence 99999999853
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=6.7e-39 Score=337.29 Aligned_cols=284 Identities=21% Similarity=0.307 Sum_probs=250.4
Q ss_pred CCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCce
Q 005096 141 NKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNV 220 (715)
Q Consensus 141 ~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~ 220 (715)
..+++.+.+++++++|+.|++++ ++.|.+||+++.+....+.+|...|++++|++++++|++|+.||.|+|||+.+...
T Consensus 14 ~~~r~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~ 92 (311)
T d1nr0a1 14 RTARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTH 92 (311)
T ss_dssp CCCTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTC
T ss_pred CCCCCCeEEEEEcCCCCEEEEEe-CCEEEEEECCCCceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeecccc
Confidence 34666778899999999999986 55799999999999999999999999999999999999999999999999988753
Q ss_pred --eeeecCCCCCeEEEEEecCCCEEEEEEC--CCcEEEEECCCCeeEEEecccCCceEEEEEcCCCC-EEEEEeCCCcEE
Q 005096 221 --KANKSAHKESVRDLSFCRTDLKFCSCSD--DTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKS-LLVSGGKDSLVK 295 (715)
Q Consensus 221 --~~~~~~h~~~I~~l~~spd~~~Las~s~--Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~-~L~sgs~Dg~I~ 295 (715)
...+..|...|.+++|++++++|++++. +..++|||+++++.+..+.+|...|++++|+++++ .|++|+.|+.|+
T Consensus 93 ~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~ 172 (311)
T d1nr0a1 93 ILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVA 172 (311)
T ss_dssp CEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEE
T ss_pred ccccccccccCccccccccccccccccccccccccccccccccccccccccccccccccccccccceeeecccccccccc
Confidence 3557789999999999999999999986 45699999999999999999999999999999988 478899999999
Q ss_pred EEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEee-------cCCCCeEEEEEccCCCC
Q 005096 296 LWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFR-------GHRKDVTALAWHPFHEE 368 (715)
Q Consensus 296 iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~-------~h~~~V~~l~~sp~~~~ 368 (715)
+||+++++.+..+..|...|++++|++++++|++++.|+.|++||+++++.+..+. +|...|++++|++ +++
T Consensus 173 i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~-~~~ 251 (311)
T d1nr0a1 173 IFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSP-DGT 251 (311)
T ss_dssp EEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECT-TSS
T ss_pred cccccccccccccccccccccccccCccccccccccccccccccccccccccccccccccccccccccccccccCC-CCC
Confidence 99999999999999999999999999999999999999999999999988877664 5778899999999 789
Q ss_pred EEEEEeCCCcEEEEEcCCCCceEEEeecc--CCCEEEEEEcCCCCEEEEEECCCeEEEEecC
Q 005096 369 YFVSGSLDGSIFHWLVGHETPQVEIHNVH--DNTVWDLAWHPIGYLLCSGSNDHTTKFWCRN 428 (715)
Q Consensus 369 ~l~sgs~DG~I~iwd~~~~~~~~~~~~~h--~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~ 428 (715)
+|++|+.||.|+|||+++.+.+..+...+ ...+.++.|+ +..|++++.||.|++||.+
T Consensus 252 ~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~~--~~~l~s~s~dG~i~~wd~d 311 (311)
T d1nr0a1 252 KIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWT--KQALVSISANGFINFVNPE 311 (311)
T ss_dssp EEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEEC--SSCEEEEETTCCEEEEETT
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEEECCCCccceEEEEEec--CCEEEEEECCCEEEEEeCC
Confidence 99999999999999998877655444322 2345566665 5579999999999999974
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=1.3e-37 Score=325.25 Aligned_cols=288 Identities=24% Similarity=0.382 Sum_probs=259.0
Q ss_pred EEEecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005096 136 VHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQN 215 (715)
Q Consensus 136 ~~~~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~ 215 (715)
..++|+||.+.|++|+|++++++||+|+.||+|+|||+.+++.+..+..|...|.+++|++++++|++++.|+.|++|+.
T Consensus 47 ~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~ 126 (340)
T d1tbga_ 47 TRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNL 126 (340)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEES
T ss_pred eeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccceeecccc
Confidence 34579999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CCCc----eeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCC
Q 005096 216 NMNN----VKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKD 291 (715)
Q Consensus 216 ~~~~----~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~D 291 (715)
.... ....+..|...+...... .+..++....|..+..|+............+...+..+.+.+++.++++++.|
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 205 (340)
T d1tbga_ 127 KTREGNVRVSRELAGHTGYLSCCRFL-DDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACD 205 (340)
T ss_dssp SSSCSCCCEEEEECCCSSCEEEEEEE-ETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred cccccccccceecccccccccccccc-cccccccccccccccccccccccccccccccceeEeeeccccccceeEEeecC
Confidence 6543 344455666665555544 45678888999999999998888888888888899999999999999999999
Q ss_pred CcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEee--cCCCCeEEEEEccCCCCE
Q 005096 292 SLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFR--GHRKDVTALAWHPFHEEY 369 (715)
Q Consensus 292 g~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~--~h~~~V~~l~~sp~~~~~ 369 (715)
+.|++||+++++.+..+..|...|++++|++++++|++++.|+.|++||++..+.+..+. .+...|++++|++ ++++
T Consensus 206 ~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~ 284 (340)
T d1tbga_ 206 ASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSK-SGRL 284 (340)
T ss_dssp TEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECS-SSCE
T ss_pred ceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEEECC-CCCE
Confidence 999999999999999999999999999999999999999999999999999998887764 5567799999999 8899
Q ss_pred EEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEe
Q 005096 370 FVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWC 426 (715)
Q Consensus 370 l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWd 426 (715)
|++|+.||.|+|||+.+...+ ..+.+|.+.|++++|++++.+|++|+.||.|+|||
T Consensus 285 l~~g~~dg~i~iwd~~~~~~~-~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 285 LLAGYDDFNCNVWDALKADRA-GVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EEEEETTSCEEEEETTTCCEE-EEECCCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEEEECCCEEEEEECCCCcEE-EEEcCCCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence 999999999999999877654 45557999999999999999999999999999997
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=2.3e-37 Score=332.89 Aligned_cols=284 Identities=16% Similarity=0.229 Sum_probs=239.2
Q ss_pred CccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc--eEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcee
Q 005096 144 RCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFN--FEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVK 221 (715)
Q Consensus 144 ~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~--~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~ 221 (715)
.++|+|++|++|+++||+|+.||.|+|||+++++ .+..+.+|.+.|++|+|++++++|++++.|+.|+|||++++...
T Consensus 7 ~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~ 86 (371)
T d1k8kc_ 7 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWK 86 (371)
T ss_dssp SSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEE
T ss_pred CCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecccccc
Confidence 4789999999999999999999999999997765 56778899999999999999999999999999999999876543
Q ss_pred --eeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCee----EEEecccCCceEEEEEcCCCCEEEEEeCCCcEE
Q 005096 222 --ANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQE----ERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVK 295 (715)
Q Consensus 222 --~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~----~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~ 295 (715)
..+..|...|.+++|+++++.|++++.|++|++|+++.... ......|...|.+++|+|++++|++++.|+.|+
T Consensus 87 ~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~ 166 (371)
T d1k8kc_ 87 PTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCR 166 (371)
T ss_dssp EEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred cccccccccccccccccccccccceeecccCcceeeeeecccccccccccccccccccccccccccccceeccccCcEEE
Confidence 44567888999999999999999999999999999865433 233456888999999999999999999999999
Q ss_pred EEECCCC------------------ceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCe
Q 005096 296 LWDAKSG------------------RELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDV 357 (715)
Q Consensus 296 iwDl~s~------------------~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V 357 (715)
+||+... ..+.....|...|.+++|++++++|++++.|+.|++||+++++.+..+..|...|
T Consensus 167 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v 246 (371)
T d1k8kc_ 167 IFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPL 246 (371)
T ss_dssp EEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCE
T ss_pred EEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeecccceeeeecccccc
Confidence 9998643 2345566788899999999999999999999999999999999999999999999
Q ss_pred EEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEE----------------------------------------Eeecc
Q 005096 358 TALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVE----------------------------------------IHNVH 397 (715)
Q Consensus 358 ~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~----------------------------------------~~~~h 397 (715)
.+++|++ ++.+|++| .|+.+++|+.+....... +...|
T Consensus 247 ~s~~fs~-d~~~la~g-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H 324 (371)
T d1k8kc_ 247 LAVTFIT-ESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLH 324 (371)
T ss_dssp EEEEEEE-TTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSS
T ss_pred eeeeecC-CCCEEEEE-cCCceEEEEeeCCCceEEEeeeecCccccccccccceeeEecccceeEEeccccccceecccc
Confidence 9999999 67777655 477776765433211111 01137
Q ss_pred CCCEEEEEEcCCC----CEEEEEECCCeEEEEecCC
Q 005096 398 DNTVWDLAWHPIG----YLLCSGSNDHTTKFWCRNR 429 (715)
Q Consensus 398 ~~~V~~l~~spdg----~~L~sgs~Dg~I~iWdl~~ 429 (715)
.+.|+++++.+.+ ..|+|++.||.|+|||++.
T Consensus 325 ~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~~~ 360 (371)
T d1k8kc_ 325 KNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS 360 (371)
T ss_dssp SSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred cCCEEEEEEeCCCCcceEEEEEEcCCCeEEEEeCCc
Confidence 8889999997753 4699999999999999854
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=3e-36 Score=311.98 Aligned_cols=285 Identities=16% Similarity=0.259 Sum_probs=234.1
Q ss_pred EEEecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEe-ccCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 005096 136 VHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQ-AHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQ 214 (715)
Q Consensus 136 ~~~~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~-~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd 214 (715)
+.+.+.||.+.|++|+|++|+++|++|+.||+|+|||+++++.++.+. .|...|++++|++++++ ++++.|+.|++|+
T Consensus 4 ~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~-~~~~~d~~v~~~~ 82 (299)
T d1nr0a2 4 IDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDL-FTVSWDDHLKVVP 82 (299)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCE-EEEETTTEEEEEC
T ss_pred cceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeecccee-ecccceeeEEEec
Confidence 456789999999999999999999999999999999999999888874 68999999999999875 4566789999999
Q ss_pred CCCCce---eeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCC
Q 005096 215 NNMNNV---KANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKD 291 (715)
Q Consensus 215 ~~~~~~---~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~D 291 (715)
...... ......+...+.+++|+++++++++++ ++.+++|+... ..... ....+.+++|++++++|++++.|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~-~~~i~~~~~~~--~~~~~--~~~~~~~~~~s~~~~~l~~g~~d 157 (299)
T d1nr0a2 83 AGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAAC-YKHIAIYSHGK--LTEVP--ISYNSSCVALSNDKQFVAVGGQD 157 (299)
T ss_dssp SSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEE-SSEEEEEETTE--EEEEE--CSSCEEEEEECTTSCEEEEEETT
T ss_pred cCCccccccccccccccccccccccccccccccccc-ccccccccccc--ccccc--ccccccccccccccccccccccc
Confidence 765432 222345677899999999998777665 56899999643 22222 34467899999999999999999
Q ss_pred CcEEEEECCCCceeE-EeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEE---EEeecCCCCeEEEEEccCCC
Q 005096 292 SLVKLWDAKSGRELC-SFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKEL---ESFRGHRKDVTALAWHPFHE 367 (715)
Q Consensus 292 g~I~iwDl~s~~~~~-~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~---~~~~~h~~~V~~l~~sp~~~ 367 (715)
+.|++||+++++... ....|...|++++|++++++|++++.|+.|++||+.++..+ ..+..|...|++++|++ ++
T Consensus 158 g~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~-~~ 236 (299)
T d1nr0a2 158 SKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSP-DN 236 (299)
T ss_dssp SEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECT-TS
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cc
Confidence 999999998776543 34468889999999999999999999999999999877654 34567889999999999 88
Q ss_pred CEEEEEeCCCcEEEEEcCCCCceEE-Eeec-cCCCEEEEEEcCCCCEEEEEECCCeEEEEecC
Q 005096 368 EYFVSGSLDGSIFHWLVGHETPQVE-IHNV-HDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRN 428 (715)
Q Consensus 368 ~~l~sgs~DG~I~iwd~~~~~~~~~-~~~~-h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~ 428 (715)
.+|++|+.||.|+|||+++...... .... +...|.++.|. ++.+|++++.|++|+|||+.
T Consensus 237 ~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~s~s~D~~i~iWdl~ 298 (299)
T d1nr0a2 237 VRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWL-NETTIVSAGQDSNIKFWNVP 298 (299)
T ss_dssp SEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEE-ETTEEEEEETTSCEEEEECC
T ss_pred cceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEEEC-CCCEEEEEeCCCEEEEEecc
Confidence 9999999999999999987654333 3333 34567777654 67799999999999999984
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.8e-35 Score=311.75 Aligned_cols=271 Identities=17% Similarity=0.260 Sum_probs=238.8
Q ss_pred EeeehhhheeeEEEEEeccCCCccccccCchhhhcCccceeecCCCCCceeeeEEEEecCCCCccEEEEEEcCCCCEEEE
Q 005096 82 VDYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSFAAKFVHTSLNKNRCSINRVLWTPTGRRLIT 161 (715)
Q Consensus 82 ~~~~~~~~~~~~irvW~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~~l~~spdg~~Lat 161 (715)
..++.+.. ++.|++|++....... .+......+|.+.|++|+|++|+++|++
T Consensus 63 g~~latg~-dg~V~iWd~~~~~~~~---------------------------~~~~~~~~~h~~~I~~v~~s~dg~~l~s 114 (337)
T d1gxra_ 63 TRHVYTGG-KGCVKVWDISHPGNKS---------------------------PVSQLDCLNRDNYIRSCKLLPDGCTLIV 114 (337)
T ss_dssp SSEEEEEC-BSEEEEEETTSTTCCS---------------------------CSEEEECSCTTSBEEEEEECTTSSEEEE
T ss_pred CCEEEEEE-CCEEEEEEccCCcccc---------------------------eeEEeeecCCCCcEEEEEEcCCCCEEEE
Confidence 34555554 6789999876433111 1112345689999999999999999999
Q ss_pred EeCCCeEEEEeCCC--CceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecC
Q 005096 162 GSQSGEFTLWNGQS--FNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRT 239 (715)
Q Consensus 162 gs~dg~I~Iwd~~~--~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd 239 (715)
++.||.|+|||+.. .+....+..|...|.+++|++++.+|++++.|+.|++|++.+++.......|...|.+++|+++
T Consensus 115 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~ 194 (337)
T d1gxra_ 115 GGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISND 194 (337)
T ss_dssp EESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTT
T ss_pred eecccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999874 4566778889999999999999999999999999999999999999998999999999999999
Q ss_pred CCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCceEEEE
Q 005096 240 DLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVK 319 (715)
Q Consensus 240 ~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~ 319 (715)
+..+++++.|+.|++||+++++.+..+. +...|.+++|++++++|++++.|+.|++||+++++.. ....|...|++++
T Consensus 195 ~~~~~~~~~d~~v~i~d~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-~~~~~~~~i~~v~ 272 (337)
T d1gxra_ 195 GTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHLHESCVLSLK 272 (337)
T ss_dssp SSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EECCCSSCEEEEE
T ss_pred ccccccccccccccccccccceeecccc-cccceEEEEEcccccccceeccccccccccccccccc-cccccccccceEE
Confidence 9999999999999999999998887765 7789999999999999999999999999999987765 4556899999999
Q ss_pred EcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEc
Q 005096 320 WNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLV 384 (715)
Q Consensus 320 ~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~ 384 (715)
|++++++|++++.|+.|++||+.+++.+..+. |...|++++|++ ++++|++++.||+|+|||+
T Consensus 273 ~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~-d~~~l~t~s~D~~I~vWdl 335 (337)
T d1gxra_ 273 FAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISV-DDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp ECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECT-TSCEEEEEETTSCEEEEEE
T ss_pred ECCCCCEEEEEeCCCeEEEEECCCCCEEEEcc-CCCCEEEEEEeC-CCCEEEEEeCCCeEEEEEE
Confidence 99999999999999999999999999888766 778999999999 7899999999999999996
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=4.2e-35 Score=308.12 Aligned_cols=244 Identities=18% Similarity=0.313 Sum_probs=219.1
Q ss_pred ecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce--EEEEeccCCCEEEEEEcCCCCEEEEEeC--CCcEEEEe
Q 005096 139 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNF--EMILQAHDHAIRSMVWSHNDNWMVSGDD--GGAIKYWQ 214 (715)
Q Consensus 139 ~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~--~~~l~~h~~~V~~l~~spdg~~L~tgs~--dg~I~iwd 214 (715)
.+.+|.+.|++++|+|+|++||+|+.||+|+|||+.+.+. ...+..|...|.+++|++++++|++++. +..++||+
T Consensus 53 ~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~ 132 (311)
T d1nr0a1 53 IYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFL 132 (311)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEE
T ss_pred EEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccccccccccccCccccccccccccccccccccccccccccc
Confidence 3568999999999999999999999999999999988764 3567889999999999999999998875 45699999
Q ss_pred CCCCceeeeecCCCCCeEEEEEecCCCE-EEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCc
Q 005096 215 NNMNNVKANKSAHKESVRDLSFCRTDLK-FCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSL 293 (715)
Q Consensus 215 ~~~~~~~~~~~~h~~~I~~l~~spd~~~-Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~ 293 (715)
+++++....+..|...|.+++|++++++ |++|+.|+.|++||+++.+....+..|...|++++|++++++|++++.|+.
T Consensus 133 ~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~ 212 (311)
T d1nr0a1 133 FDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGT 212 (311)
T ss_dssp TTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred cccccccccccccccccccccccccceeeecccccccccccccccccccccccccccccccccccCcccccccccccccc
Confidence 9999988899999999999999998875 888999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCCCceeEEec-------cCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCC---CeEEEEEc
Q 005096 294 VKLWDAKSGRELCSFH-------GHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRK---DVTALAWH 363 (715)
Q Consensus 294 I~iwDl~s~~~~~~~~-------~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~---~V~~l~~s 363 (715)
|++||+++++.+..+. +|...|++++|++++++|++|+.||.|+|||+++++++.++..+.. .+.++.|
T Consensus 213 v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~- 291 (311)
T d1nr0a1 213 IVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW- 291 (311)
T ss_dssp EEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE-
T ss_pred ccccccccccccccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCccceEEEEEe-
Confidence 9999999988777664 4778899999999999999999999999999999999999886653 3455555
Q ss_pred cCCCCEEEEEeCCCcEEEEEcC
Q 005096 364 PFHEEYFVSGSLDGSIFHWLVG 385 (715)
Q Consensus 364 p~~~~~l~sgs~DG~I~iwd~~ 385 (715)
+++.|++++.||.|++||.+
T Consensus 292 --~~~~l~s~s~dG~i~~wd~d 311 (311)
T d1nr0a1 292 --TKQALVSISANGFINFVNPE 311 (311)
T ss_dssp --CSSCEEEEETTCCEEEEETT
T ss_pred --cCCEEEEEECCCEEEEEeCC
Confidence 45678999999999999974
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=4.4e-35 Score=300.98 Aligned_cols=286 Identities=24% Similarity=0.471 Sum_probs=261.8
Q ss_pred CCCCcccchhhhhcccccccceEeeehhhheeeEEEEEeccCCCccccccCchhhhcCccceeecCCCCCceeeeEEEEe
Q 005096 60 PYDAHGDSFAAKRMRKLTQRRAVDYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSFAAKFVHTS 139 (715)
Q Consensus 60 ~~~~h~~~~~~~r~~~~~~~~~~~~~~~~~~~~~irvW~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 139 (715)
.+.+|...|.+..+.. ..+++.+...+++|++|+....+. ..+
T Consensus 12 ~L~GH~~~I~~l~~sp-----~~~~l~s~s~Dg~i~iWd~~~~~~--------------------------------~~~ 54 (317)
T d1vyhc1 12 ALSGHRSPVTRVIFHP-----VFSVMVSASEDATIKVWDYETGDF--------------------------------ERT 54 (317)
T ss_dssp EEECCSSCEEEEEECS-----SSSEEEEEESSSCEEEEETTTCCC--------------------------------CEE
T ss_pred EEcCCCCCeEEEEEcC-----CCCEEEEEeCCCeEEEEECCCCCE--------------------------------EEE
Confidence 4788888887766643 245677788899999998753320 124
Q ss_pred cCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc
Q 005096 140 LNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNN 219 (715)
Q Consensus 140 l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~ 219 (715)
+.+|...|++++|++++.++++++.++.+.+|+....+....+..|...+.++.|+++++.|++++.|+.+++||+++++
T Consensus 55 ~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 134 (317)
T d1vyhc1 55 LKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGY 134 (317)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCC
T ss_pred EeCCCCcEEEEeeecccccccccccccccccccccccccccccccccccceeeeccCCCceEEeeccCcceeEeecccce
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCC------------------
Q 005096 220 VKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPT------------------ 281 (715)
Q Consensus 220 ~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spd------------------ 281 (715)
....+..|...+.+++|++++++|++++.|+.|++||+.+.+.+..+..+...+.+++|+++
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (317)
T d1vyhc1 135 CVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSG 214 (317)
T ss_dssp EEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-----
T ss_pred eeeEEccCCCcceeeecccCCCEEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeec
Confidence 99999999999999999999999999999999999999999999999999999999999875
Q ss_pred --CCEEEEEeCCCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEE
Q 005096 282 --KSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTA 359 (715)
Q Consensus 282 --g~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~ 359 (715)
+.++++++.|+.|++||+++++.+.++.+|...|++++|++++++|++++.||.|+|||+++++.+.++.+|...|++
T Consensus 215 ~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~ 294 (317)
T d1vyhc1 215 KPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTS 294 (317)
T ss_dssp --CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEE
T ss_pred cCCceeEeccCCCEEEEEECCCCcEEEEEeCCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCCEEE
Confidence 357899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEccCCCCEEEEEeCCCcEEEEE
Q 005096 360 LAWHPFHEEYFVSGSLDGSIFHWL 383 (715)
Q Consensus 360 l~~sp~~~~~l~sgs~DG~I~iwd 383 (715)
++|++ ++++|++|+.||+|+|||
T Consensus 295 ~~~s~-~~~~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 295 LDFHK-TAPYVVTGSVDQTVKVWE 317 (317)
T ss_dssp EEECS-SSSCEEEEETTSEEEEEC
T ss_pred EEEcC-CCCEEEEEeCCCeEEEeC
Confidence 99999 788999999999999997
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=9.2e-35 Score=304.12 Aligned_cols=283 Identities=17% Similarity=0.314 Sum_probs=224.8
Q ss_pred EEecCCCCccE-EEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 005096 137 HTSLNKNRCSI-NRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQN 215 (715)
Q Consensus 137 ~~~l~~H~~~I-~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~ 215 (715)
.++|++|.+.| +|++| ++++||+|+.||+|+|||+.+++.+.++.+|++.|++|+|+++ ++|++++.|+.|++|++
T Consensus 5 ~~tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~ 81 (355)
T d1nexb2 5 RTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDI 81 (355)
T ss_dssp EEEEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEET
T ss_pred cEEECCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCC-CEEEEEecccccccccc
Confidence 45789998885 66666 5789999999999999999999999999999999999999975 68999999999999998
Q ss_pred CCCceeeeecCCCC--CeEEEEEecCCCEEEEEECCCcEEEEEC------------------------------------
Q 005096 216 NMNNVKANKSAHKE--SVRDLSFCRTDLKFCSCSDDTTVKVWDF------------------------------------ 257 (715)
Q Consensus 216 ~~~~~~~~~~~h~~--~I~~l~~spd~~~Las~s~Dg~V~iwdl------------------------------------ 257 (715)
.............. .+..+.+.+++.++++++.|+.|++||+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (355)
T d1nexb2 82 KKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHM 161 (355)
T ss_dssp TTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCS
T ss_pred cccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeecc
Confidence 87765544432222 2233334445555555555555555554
Q ss_pred ---------------------------CCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEecc
Q 005096 258 ---------------------------ARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHG 310 (715)
Q Consensus 258 ---------------------------~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~ 310 (715)
.+++.+..+..+...+.++.|+++++++++++.|+.|++||++++..+..+.+
T Consensus 162 ~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~ 241 (355)
T d1nexb2 162 ASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQG 241 (355)
T ss_dssp SCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECC
T ss_pred ccccccccccceeeeecccceeeeeecccccceeeeeccccccccccccccceeeecccccceEEeeecccccccccccc
Confidence 44444444555667788999999999999999999999999999999999999
Q ss_pred CCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCce
Q 005096 311 HKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQ 390 (715)
Q Consensus 311 ~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~ 390 (715)
|...|.+++|+ +++|++++.||.|++||+++.... +..|...+.++.+.+.++.+|++|+ ||.|+|||+++++.+
T Consensus 242 h~~~v~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~g~-d~~i~vwd~~tg~~~ 316 (355)
T d1nexb2 242 HTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRK--FSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLV 316 (355)
T ss_dssp CSSCCCEEEEC--SSEEEEECTTSEEEEEETTTCCEE--EEEECTTCCCCCEEEECSSEEEEEE-TTEEEEEETTTCCBC
T ss_pred ccccccccccc--cceeeeeeccccccccccccccee--cccccCCceEEEEEcCCCCEEEEEe-CCEEEEEECCCCCEE
Confidence 99999999996 579999999999999999987654 4445666666655443777777665 889999999988776
Q ss_pred EEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecC
Q 005096 391 VEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRN 428 (715)
Q Consensus 391 ~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~ 428 (715)
......|.+.|++++|+++ .+|++++.||.++||.++
T Consensus 317 ~~~~~~~~~~V~~v~~~~~-~~~~~~s~dg~~~l~~~d 353 (355)
T d1nexb2 317 HANILKDADQIWSVNFKGK-TLVAAVEKDGQSFLEILD 353 (355)
T ss_dssp CSCTTTTCSEEEEEEEETT-EEEEEEESSSCEEEEEEE
T ss_pred EEEecCCCCCEEEEEEcCC-eEEEEEECCCcEEEEEEe
Confidence 5666778999999999986 578889999998877653
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=4.8e-34 Score=297.00 Aligned_cols=282 Identities=21% Similarity=0.351 Sum_probs=234.0
Q ss_pred EecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 005096 138 TSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNM 217 (715)
Q Consensus 138 ~~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~ 217 (715)
..|++|.+.|.+ +++.+|++||||+.||+|+|||+.+++.+.++.+|...|.+++|++ ++|++++.|+.+++|+...
T Consensus 10 ~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~--~~l~s~s~D~~~~~~~~~~ 86 (342)
T d2ovrb2 10 KVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRD--NIIISGSTDRTLKVWNAET 86 (342)
T ss_dssp EEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEET--TEEEEEETTSCEEEEETTT
T ss_pred EEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCC--Cccccceeccccccccccc
Confidence 357899999865 3556799999999999999999999999999999999999999985 4999999999999999876
Q ss_pred CceeeeecCCCCCeEE--------------------------------------EEEecCCCEEEEEECCCcEEEEECCC
Q 005096 218 NNVKANKSAHKESVRD--------------------------------------LSFCRTDLKFCSCSDDTTVKVWDFAR 259 (715)
Q Consensus 218 ~~~~~~~~~h~~~I~~--------------------------------------l~~spd~~~Las~s~Dg~V~iwdl~~ 259 (715)
.........+...+.. ..+......+++++.|+.|++||+..
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~ 166 (342)
T d2ovrb2 87 GECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPET 166 (342)
T ss_dssp TEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGG
T ss_pred ccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeEEEeeccc
Confidence 5444333222222111 12233455678889999999999998
Q ss_pred CeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEE
Q 005096 260 CQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLY 339 (715)
Q Consensus 260 ~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iw 339 (715)
.+.+..+.+|...+..+.+ ++.+|++++.|+.|++||+++++.+..+..|...+.+++++ +++|++++.|+.|++|
T Consensus 167 ~~~~~~~~~~~~~~~~~~~--~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~d~~i~iw 242 (342)
T d2ovrb2 167 ETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNADSTVKIW 242 (342)
T ss_dssp TEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEETTSCEEEE
T ss_pred ceeeEEEcCcccccccccC--CCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEecC--CCEEEEEcCCCEEEEE
Confidence 8888888888877766666 58899999999999999999999999999999999998886 5699999999999999
Q ss_pred ECCCCeEEEEeec---CCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEee----ccCCCEEEEEEcCCCCE
Q 005096 340 DIRAMKELESFRG---HRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHN----VHDNTVWDLAWHPIGYL 412 (715)
Q Consensus 340 Dl~t~~~~~~~~~---h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~----~h~~~V~~l~~spdg~~ 412 (715)
|+.+.+....+.. |...+.++.+ +++++++++.||.|+|||+++++.+..+.. .|.+.|++++|++++.+
T Consensus 243 d~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~ 319 (342)
T d2ovrb2 243 DIKTGQCLQTLQGPNKHQSAVTCLQF---NKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLV 319 (342)
T ss_dssp ETTTCCEEEEECSTTSCSSCEEEEEE---CSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEE
T ss_pred ecccccccccccccceeeeceeeccc---CCCeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCCCE
Confidence 9999888877765 4456677766 467999999999999999998877665542 46778999999999999
Q ss_pred EEEEECCCe----EEEEecCC
Q 005096 413 LCSGSNDHT----TKFWCRNR 429 (715)
Q Consensus 413 L~sgs~Dg~----I~iWdl~~ 429 (715)
|++|+.||+ |++||++.
T Consensus 320 la~g~~dGt~~~~l~~~Df~~ 340 (342)
T d2ovrb2 320 CAVGSRNGTEETKLLVLDFDV 340 (342)
T ss_dssp EEEECSSSSSCCEEEEEECCC
T ss_pred EEEEeCCCCCeeEEEEEeCCC
Confidence 999999985 99999975
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=3.4e-34 Score=306.81 Aligned_cols=303 Identities=23% Similarity=0.321 Sum_probs=237.5
Q ss_pred CcccchhhhhcccccccceEeeehhhheeeEEEEEeccCCCccccccCchhhhcCccceeecCCCCCceeeeEEEEecCC
Q 005096 63 AHGDSFAAKRMRKLTQRRAVDYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSFAAKFVHTSLNK 142 (715)
Q Consensus 63 ~h~~~~~~~r~~~~~~~~~~~~~~~~~~~~~irvW~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 142 (715)
+|.+.|.+..|.. ...++++.. +..|++|+....+.......... ...............
T Consensus 60 ~H~~~V~~l~fs~-----dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~ 119 (388)
T d1erja_ 60 DHTSVVCCVKFSN-----DGEYLATGC-NKTTQVYRVSDGSLVARLSDDSA--------------ANKDPENLNTSSSPS 119 (388)
T ss_dssp ECSSCCCEEEECT-----TSSEEEEEC-BSCEEEEETTTCCEEEEECC-------------------------------C
T ss_pred CCCCcEEEEEECC-----CCCEEEEEe-CCeEEEEEecccceEeeeccccc--------------ccccccccccccccC
Confidence 3555555544432 234555544 77999999865543221111000 000011122234567
Q ss_pred CCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceee
Q 005096 143 NRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKA 222 (715)
Q Consensus 143 H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~ 222 (715)
|...|++|+|++++++|++|+.||.|++||..+++.+..+.+|...|.+++|++++..+++++.++.|++||..+.....
T Consensus 120 ~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~ 199 (388)
T d1erja_ 120 SDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSL 199 (388)
T ss_dssp CCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE
T ss_pred CCCCEEEEEECCCCCcceecccccccccccccccccccccccccccccccccccccccccccccceeeeeeecccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988777
Q ss_pred eecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEec-------ccCCceEEEEEcCCCCEEEEEeCCCcEE
Q 005096 223 NKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLT-------GHGWDVKSVDWHPTKSLLVSGGKDSLVK 295 (715)
Q Consensus 223 ~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~-------~~~~~I~si~~spdg~~L~sgs~Dg~I~ 295 (715)
....+...+..+.+..++++|++++.|+.|++||+.++.....+. +|...|++++|++++++|++++.|+.|+
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~ 279 (388)
T d1erja_ 200 TLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVK 279 (388)
T ss_dssp EEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred ccccccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEE
Confidence 766666555555555688999999999999999999887766553 5778899999999999999999999999
Q ss_pred EEECCCCce------------eEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEc
Q 005096 296 LWDAKSGRE------------LCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWH 363 (715)
Q Consensus 296 iwDl~s~~~------------~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~s 363 (715)
+||+++++. ......|...|++++|++++++|++|+.||.|+|||+++++.+.++.+|...|++++++
T Consensus 280 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~ 359 (388)
T d1erja_ 280 LWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVA 359 (388)
T ss_dssp EEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEC
T ss_pred EEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCCCCCEEEEEEe
Confidence 999976533 33445678899999999999999999999999999999999999999999999999864
Q ss_pred cC-----CCCEEEEEeCCCcEEEEEcC
Q 005096 364 PF-----HEEYFVSGSLDGSIFHWLVG 385 (715)
Q Consensus 364 p~-----~~~~l~sgs~DG~I~iwd~~ 385 (715)
.. ++.+|++|+.||+|+||+++
T Consensus 360 ~~~~~spd~~~l~s~s~Dg~I~iW~~~ 386 (388)
T d1erja_ 360 NGSSLGPEYNVFATGSGDCKARIWKYK 386 (388)
T ss_dssp SSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred cCcccCCCCCEEEEEeCCCEEEEEeee
Confidence 31 67899999999999999984
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=6.4e-32 Score=274.31 Aligned_cols=273 Identities=23% Similarity=0.476 Sum_probs=233.7
Q ss_pred ecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 005096 139 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN 218 (715)
Q Consensus 139 ~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~ 218 (715)
....|...|+|++| |+++||+|+.||+|+|||+++++.+.++.+|...|++|+| ++++|++|+.|+.|++|++..+
T Consensus 10 ~~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~ 85 (293)
T d1p22a2 10 CRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTG 85 (293)
T ss_dssp CCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSC
T ss_pred ccCCCCCCEEEEEE--cCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeec--ccceeecccccccccccccccc
Confidence 35678899999876 7899999999999999999999999999999999999987 6789999999999999999998
Q ss_pred ceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCe---eEEEecccCCceEEEEEcCCCCEEEEEeCCCcEE
Q 005096 219 NVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQ---EERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVK 295 (715)
Q Consensus 219 ~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~---~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~ 295 (715)
............. ..+......++++..++.+++||+.... ....+..|...|.++.+. ...+++++.|+.|+
T Consensus 86 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~s~d~~i~ 161 (293)
T d1p22a2 86 EMLNTLIHHCEAV--LHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIK 161 (293)
T ss_dssp CEEEEECCCCSCE--EEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEE
T ss_pred ccccccccccccc--ccccccccceeecccccceeEeeccccccccccccccccccccccceec--ccccccccCCCcee
Confidence 8777665544443 3445567789999999999999997654 344556778888888876 56788999999999
Q ss_pred EEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeC
Q 005096 296 LWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSL 375 (715)
Q Consensus 296 iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~ 375 (715)
+||+++++.+..+.++...+..+.++ +.+|++++.|+.|+|||+++.+.+..+..+...+..+.+ +..+|++++.
T Consensus 162 ~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~---~~~~l~sg~~ 236 (293)
T d1p22a2 162 VWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF---DNKRIVSGAY 236 (293)
T ss_dssp EEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC---CSSEEEEEET
T ss_pred eecCCCCcEEEEEcccccccccccCC--CCeEEEecCCCEEEEEecccceeeeeecccceeeeeccc---cceEEEEEcC
Confidence 99999999999999898889888876 568999999999999999999999999999888876554 6789999999
Q ss_pred CCcEEEEEcCCC--------CceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEe
Q 005096 376 DGSIFHWLVGHE--------TPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWC 426 (715)
Q Consensus 376 DG~I~iwd~~~~--------~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWd 426 (715)
||.|++||+... ......+.+|.+.|++++|+ +.+|++++.||+|+|||
T Consensus 237 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d--~~~l~s~s~Dg~i~iWD 293 (293)
T d1p22a2 237 DGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD--EFQIVSSSHDDTILIWD 293 (293)
T ss_dssp TSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEEC--SSCEEECCSSSEEEEEC
T ss_pred CCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEEc--CCEEEEEecCCEEEEeC
Confidence 999999997432 23456677899999999994 67899999999999997
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.2e-32 Score=290.46 Aligned_cols=281 Identities=14% Similarity=0.186 Sum_probs=226.6
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCe-EEEEeCCCC--ceEEEEeccC-CCEEEEEEcC--CCCEEEEEeCCCcEEEEeCCCC
Q 005096 145 CSINRVLWTPTGRRLITGSQSGE-FTLWNGQSF--NFEMILQAHD-HAIRSMVWSH--NDNWMVSGDDGGAIKYWQNNMN 218 (715)
Q Consensus 145 ~~I~~l~~spdg~~Latgs~dg~-I~Iwd~~~~--~~~~~l~~h~-~~V~~l~~sp--dg~~L~tgs~dg~I~iwd~~~~ 218 (715)
+.+++++|+++++.|++++.+.. |+.||.... .....+.+|. ..|++++|+| ++.+|++|+.||+|+|||+..+
T Consensus 18 ~~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~ 97 (325)
T d1pgua1 18 NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFD 97 (325)
T ss_dssp TCCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEE
T ss_pred CCeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCC
Confidence 35678999999999998876643 566765443 4466777775 6799999997 5689999999999999998654
Q ss_pred ce--------eeeecCCCCCeEEEEEecCCCEEEEEEC--CCcEEEEECCCCeeEEEecccCCceEEEEEcCCCC-EEEE
Q 005096 219 NV--------KANKSAHKESVRDLSFCRTDLKFCSCSD--DTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKS-LLVS 287 (715)
Q Consensus 219 ~~--------~~~~~~h~~~I~~l~~spd~~~Las~s~--Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~-~L~s 287 (715)
.. ...+..|...|.+++|++++++|++++. ++.+++|+.++++.+..+.+|...|++++|++++. ++++
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~ 177 (325)
T d1pgua1 98 KESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMT 177 (325)
T ss_dssp GGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEE
T ss_pred cceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceeeeecccccccccccccccceEEE
Confidence 32 2234568889999999999999988765 67899999999999999999999999999999887 4778
Q ss_pred EeCCCcEEEEECCCCceeEEec---cCCCceEEEEEcCC-CCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEc
Q 005096 288 GGKDSLVKLWDAKSGRELCSFH---GHKNMVLCVKWNQN-GNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWH 363 (715)
Q Consensus 288 gs~Dg~I~iwDl~s~~~~~~~~---~~~~~I~sl~~spd-g~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~s 363 (715)
++.|+.|++||+++.+....+. .+...|++++|+|+ +++|++++.|+.|++||+++++.+..+..|...+.++.|+
T Consensus 178 ~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s 257 (325)
T d1pgua1 178 VGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFA 257 (325)
T ss_dssp EETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEE
T ss_pred eecccccccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeeccccccccccccccccccceee
Confidence 9999999999999877666553 46678999999996 6899999999999999999999999999888776655554
Q ss_pred ---cCCCCEEEEEeCCCcEEEEEcCCCCceEEEee-ccCCCE--EEEEEcCCCCEEEEEECCCeEEEEec
Q 005096 364 ---PFHEEYFVSGSLDGSIFHWLVGHETPQVEIHN-VHDNTV--WDLAWHPIGYLLCSGSNDHTTKFWCR 427 (715)
Q Consensus 364 ---p~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~-~h~~~V--~~l~~spdg~~L~sgs~Dg~I~iWdl 427 (715)
+ ++.+|++++.|+.|+|||+++++.+..+.. .+...+ .++.|..+ .+|++++.||.|+|||+
T Consensus 258 ~~~~-dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~s~s~dg~i~vwdl 325 (325)
T d1pgua1 258 LSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGN-GRIISLSLDGTLNFYEL 325 (325)
T ss_dssp EEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEET-TEEEEEETTSCEEEEET
T ss_pred eecc-CCCEEEEEeCCCeEEEEECCCCCEEEEEEecCCcccCeEEEEEECCC-CEEEEEECCCEEEEEEC
Confidence 3 688999999999999999998766544432 222223 34445443 47899999999999996
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=2.3e-31 Score=277.47 Aligned_cols=288 Identities=16% Similarity=0.291 Sum_probs=249.5
Q ss_pred CCCCCCCcccchhhhhcccccccceEeeehhhheeeEEEEEeccCCCccccccCchhhhcCccceeecCCCCCceeeeEE
Q 005096 57 SNPPYDAHGDSFAAKRMRKLTQRRAVDYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSFAAKFV 136 (715)
Q Consensus 57 ~~~~~~~h~~~~~~~r~~~~~~~~~~~~~~~~~~~~~irvW~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 136 (715)
..+.+.+|...|.+..+.. ...++.+...++.|++|+....+ .
T Consensus 47 ~~~tL~GH~~~I~~l~~s~-----~~~~l~sgs~Dg~v~iWd~~~~~--------------------------------~ 89 (340)
T d1tbga_ 47 TRRTLRGHLAKIYAMHWGT-----DSRLLVSASQDGKLIIWDSYTTN--------------------------------K 89 (340)
T ss_dssp EEEEECCCSSCEEEEEECT-----TSSEEEEEETTTEEEEEETTTTE--------------------------------E
T ss_pred eeEEECCCCCCEEEEEECC-----CCCEEEEEECCCceeeeecccce--------------------------------e
Confidence 3445778888887765543 34567778889999999875332 1
Q ss_pred EEecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCC----CceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEE
Q 005096 137 HTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQS----FNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKY 212 (715)
Q Consensus 137 ~~~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~----~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~i 212 (715)
...+..|...|++++|++++++|++++.|+.|++|+... .+....+..|...+....+. .+..++....+..+.+
T Consensus 90 ~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 168 (340)
T d1tbga_ 90 VHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFL-DDNQIVTSSGDTTCAL 168 (340)
T ss_dssp EEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEE-ETTEEEEEETTTEEEE
T ss_pred EEEEecccccEEeeEeeccceeeeeecccceeecccccccccccccceecccccccccccccc-cccccccccccccccc
Confidence 124567999999999999999999999999999999655 34566677787777766655 4567778888999999
Q ss_pred EeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCC
Q 005096 213 WQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDS 292 (715)
Q Consensus 213 wd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg 292 (715)
|+............+...+..+.+.+++.++++++.|+.|++||+++++.+..+.+|...|++++|++++++|++++.|+
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~ 248 (340)
T d1tbga_ 169 WDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDA 248 (340)
T ss_dssp EETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred cccccccccccccccceeEeeeccccccceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCC
Confidence 99988888888888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEECCCCceeEEec--cCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEE
Q 005096 293 LVKLWDAKSGRELCSFH--GHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYF 370 (715)
Q Consensus 293 ~I~iwDl~s~~~~~~~~--~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l 370 (715)
.|++||++..+.+..+. .+...|++++|++++++|++|+.||.|+|||+.+++.+..+.+|...|++|+|++ ++.+|
T Consensus 249 ~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~-d~~~l 327 (340)
T d1tbga_ 249 TCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTD-DGMAV 327 (340)
T ss_dssp CEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSCE
T ss_pred eEEEEeecccccccccccccccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeC-CCCEE
Confidence 99999999888777653 4567799999999999999999999999999999999999999999999999999 88899
Q ss_pred EEEeCCCcEEEEE
Q 005096 371 VSGSLDGSIFHWL 383 (715)
Q Consensus 371 ~sgs~DG~I~iwd 383 (715)
++|+.||.|+|||
T Consensus 328 ~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 328 ATGSWDSFLKIWN 340 (340)
T ss_dssp EEEETTSCEEEEC
T ss_pred EEEccCCEEEEeC
Confidence 9999999999997
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=5.5e-32 Score=278.21 Aligned_cols=269 Identities=17% Similarity=0.217 Sum_probs=223.2
Q ss_pred EEecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 005096 137 HTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNN 216 (715)
Q Consensus 137 ~~~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~ 216 (715)
..+|.+|...|++|+|++ |++|+.||+|++||+.+. ...|...|.+++++++ ..|++++.|++|++|++.
T Consensus 6 i~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~-----~~~h~~~V~~~~~~~~-~~~~s~s~D~~v~~w~~~ 75 (287)
T d1pgua2 6 LKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSM-----HQDHSNLIVSLDNSKA-QEYSSISWDDTLKVNGIT 75 (287)
T ss_dssp EEEECCCSSCEEEEETTT----TEEEETTSCEEETTTTEE-----ECCCCSCEEEEECCST-TCCEEEETTTEEEETTEE
T ss_pred eEEECCCCCceEEEEECc----EEEEeCCCeEEEEECCCC-----CCCCCCCEEEEEecCC-CeEEEEeecccccccccc
Confidence 457899999999999987 999999999999998753 3679999999999865 567899999999999865
Q ss_pred CCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCC-cEE
Q 005096 217 MNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDS-LVK 295 (715)
Q Consensus 217 ~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg-~I~ 295 (715)
..+ ....+.++++.+++..+++ +.++.+.+|+..+++.+..+..+ ..+ .+++++++.+++++.|+ .|+
T Consensus 76 ~~~-------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~v~~~~~~~v~ 144 (287)
T d1pgua2 76 KHE-------FGSQPKVASANNDGFTAVL-TNDDDLLILQSFTGDIIKSVRLN-SPG--SAVSLSQNYVAVGLEEGNTIQ 144 (287)
T ss_dssp EEE-------CSSCEEEEEECSSSEEEEE-ETTSEEEEEETTTCCEEEEEECS-SCE--EEEEECSSEEEEEETTTSCEE
T ss_pred ccc-------cccceeeeeeccCCceEEE-eecccceeeeccceeeeeecccc-cee--eeeeccCcceeeeccccceee
Confidence 422 2445778888877766555 55667899999988888777643 334 34555678888887765 799
Q ss_pred EEECCCCceeEEec-cCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEE-EeecCCCCeEEEEEccC--------
Q 005096 296 LWDAKSGRELCSFH-GHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELE-SFRGHRKDVTALAWHPF-------- 365 (715)
Q Consensus 296 iwDl~s~~~~~~~~-~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~-~~~~h~~~V~~l~~sp~-------- 365 (715)
+|++...+....+. .+...+++++|++++++|++++.||.|++||+.+++.+. .+..|...|.+++|+|.
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~ 224 (287)
T d1pgua2 145 VFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEE 224 (287)
T ss_dssp EEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------C
T ss_pred eeeccccceeeeeeeccCCceeEEEeccCccccccccccccccceeecccccccccccccccccceeeeccccccccccc
Confidence 99998766555554 467789999999999999999999999999999988765 46789999999999873
Q ss_pred -CCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEec
Q 005096 366 -HEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCR 427 (715)
Q Consensus 366 -~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl 427 (715)
++.+|++|+.|++|+|||+++.........+|...|++++|++++ .|++++.|++|++|++
T Consensus 225 ~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D~~v~iW~i 286 (287)
T d1pgua2 225 IEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGADACIKRWNV 286 (287)
T ss_dssp CSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT-EEEEEETTSCEEEEEE
T ss_pred CCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCC-EEEEEECCCeEEEEEE
Confidence 457899999999999999988788888888999999999999886 6899999999999986
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=2.1e-31 Score=285.88 Aligned_cols=243 Identities=10% Similarity=0.179 Sum_probs=208.6
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc--eeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeE
Q 005096 186 DHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNN--VKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEE 263 (715)
Q Consensus 186 ~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~--~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~ 263 (715)
.++|+|++|++|+++||+|+.|+.|+|||+++++ .+..+.+|...|.+|+|++++++|++++.|++|+|||+.+....
T Consensus 7 ~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~ 86 (371)
T d1k8kc_ 7 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWK 86 (371)
T ss_dssp SSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEE
T ss_pred CCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecccccc
Confidence 4679999999999999999999999999998765 56667899999999999999999999999999999999876544
Q ss_pred --EEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCcee----EEeccCCCceEEEEEcCCCCEEEEEECCCeEE
Q 005096 264 --RSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGREL----CSFHGHKNMVLCVKWNQNGNWVLTASKDQIIK 337 (715)
Q Consensus 264 --~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~----~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~ 337 (715)
..+..|...|++++|+++++.|++++.|+.|++|+++..... .....|...|.+++|+|++++|++++.|+.|+
T Consensus 87 ~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~ 166 (371)
T d1k8kc_ 87 PTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCR 166 (371)
T ss_dssp EEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred cccccccccccccccccccccccceeecccCcceeeeeecccccccccccccccccccccccccccccceeccccCcEEE
Confidence 445678889999999999999999999999999998765432 33456788999999999999999999999999
Q ss_pred EEECCCC------------------eEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCC
Q 005096 338 LYDIRAM------------------KELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDN 399 (715)
Q Consensus 338 iwDl~t~------------------~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~ 399 (715)
+||+... ..+.....|...|.+++|++ ++++|++++.|+.|++||+.+...... ...|..
T Consensus 167 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~s~~~d~~i~iwd~~~~~~~~~-~~~~~~ 244 (371)
T d1k8kc_ 167 IFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSA-NGSRVAWVSHDSTVCLADADKKMAVAT-LASETL 244 (371)
T ss_dssp EEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECS-SSSEEEEEETTTEEEEEEGGGTTEEEE-EECSSC
T ss_pred EEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeec-ccccccccccCCcceEEeeecccceee-eecccc
Confidence 9998642 34566778889999999999 788999999999999999988765544 446888
Q ss_pred CEEEEEEcCCCCEEEEEECCCeEEEEecCCCC
Q 005096 400 TVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPG 431 (715)
Q Consensus 400 ~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~ 431 (715)
.|++++|++|+.+|++| .|+.+++|..+...
T Consensus 245 ~v~s~~fs~d~~~la~g-~d~~~~~~~~~~~~ 275 (371)
T d1k8kc_ 245 PLLAVTFITESSLVAAG-HDCFPVLFTYDSAA 275 (371)
T ss_dssp CEEEEEEEETTEEEEEE-TTSSCEEEEEETTT
T ss_pred cceeeeecCCCCEEEEE-cCCceEEEEeeCCC
Confidence 99999999999877755 58888888775543
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.98 E-value=1.3e-30 Score=274.72 Aligned_cols=245 Identities=16% Similarity=0.231 Sum_probs=206.3
Q ss_pred cCCC-CccEEEEEEcC--CCCEEEEEeCCCeEEEEeCCCCce--------EEEEeccCCCEEEEEEcCCCCEEEEEeC--
Q 005096 140 LNKN-RCSINRVLWTP--TGRRLITGSQSGEFTLWNGQSFNF--------EMILQAHDHAIRSMVWSHNDNWMVSGDD-- 206 (715)
Q Consensus 140 l~~H-~~~I~~l~~sp--dg~~Latgs~dg~I~Iwd~~~~~~--------~~~l~~h~~~V~~l~~spdg~~L~tgs~-- 206 (715)
+.+| ...|++++|+| ++++|++|+.||+|+|||+...+. ...+..|.+.|.+++|++++++|++++.
T Consensus 58 ~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~ 137 (325)
T d1pgua1 58 FTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGR 137 (325)
T ss_dssp ECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCS
T ss_pred EeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeeccc
Confidence 4566 56899999997 678999999999999999765432 2335568899999999999999987654
Q ss_pred CCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCE-EEEEECCCcEEEEECCCCeeEEEec---ccCCceEEEEEcCC-
Q 005096 207 GGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLK-FCSCSDDTTVKVWDFARCQEERSLT---GHGWDVKSVDWHPT- 281 (715)
Q Consensus 207 dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~-Las~s~Dg~V~iwdl~~~~~~~~l~---~~~~~I~si~~spd- 281 (715)
++.+++|+.++++.+..+..|...|.+++|++++.+ +++++.|+.|++||+.+.+....+. .+...|.+++|+|+
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~ 217 (325)
T d1pgua1 138 DNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDS 217 (325)
T ss_dssp SCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTT
T ss_pred cceEEEEeecccccceeeeecccccccccccccccceEEEeecccccccccccccccceecccccCCCCccEEeeecccc
Confidence 678999999999999999999999999999998865 7789999999999998877766553 46678999999997
Q ss_pred CCEEEEEeCCCcEEEEECCCCceeEEeccCCCceEEEEEc---CCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCC--
Q 005096 282 KSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWN---QNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKD-- 356 (715)
Q Consensus 282 g~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~s---pdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~-- 356 (715)
+++|++++.|+.|++||+++++.+..+..|...+.++.|+ +|+++|++++.|+.|+|||+++++.+..+..+...
T Consensus 218 ~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~ 297 (325)
T d1pgua1 218 GEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLG 297 (325)
T ss_dssp CCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGG
T ss_pred ceeccccccccceeeeeeccccccccccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEecCCccc
Confidence 5789999999999999999999999998888776655554 58999999999999999999999999988776654
Q ss_pred eEEEEEccCCCCEEEEEeCCCcEEEEEc
Q 005096 357 VTALAWHPFHEEYFVSGSLDGSIFHWLV 384 (715)
Q Consensus 357 V~~l~~sp~~~~~l~sgs~DG~I~iwd~ 384 (715)
+..+++...++.+|++++.||.|+|||+
T Consensus 298 ~~~~~~~~~~~~~l~s~s~dg~i~vwdl 325 (325)
T d1pgua1 298 NQQVGVVATGNGRIISLSLDGTLNFYEL 325 (325)
T ss_dssp GCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred CeEEEEEECCCCEEEEEECCCEEEEEEC
Confidence 3444444435668999999999999996
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.97 E-value=6.9e-30 Score=263.73 Aligned_cols=250 Identities=15% Similarity=0.214 Sum_probs=208.0
Q ss_pred CceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeee-cCCCCCeEEEEEecCCCEEEEEECCCcEEE
Q 005096 176 FNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANK-SAHKESVRDLSFCRTDLKFCSCSDDTTVKV 254 (715)
Q Consensus 176 ~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~-~~h~~~I~~l~~spd~~~Las~s~Dg~V~i 254 (715)
+++.+++.+|.+.|++|+|++|+++|++|+.||.|+|||+++++....+ ..|...|++++|++++. +++++.|+.|++
T Consensus 2 g~~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~-~~~~~~d~~v~~ 80 (299)
T d1nr0a2 2 GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGD-LFTVSWDDHLKV 80 (299)
T ss_dssp TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSC-EEEEETTTEEEE
T ss_pred CccceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccce-eecccceeeEEE
Confidence 5678899999999999999999999999999999999999998877776 46889999999999986 556778999999
Q ss_pred EECCCCee---EEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEE
Q 005096 255 WDFARCQE---ERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTAS 331 (715)
Q Consensus 255 wdl~~~~~---~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs 331 (715)
|++..... ......+...+.+++|+++++++++++ ++.+++|+... ..... ....+.+++|++++++|++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~-~~~i~~~~~~~--~~~~~--~~~~~~~~~~s~~~~~l~~g~ 155 (299)
T d1nr0a2 81 VPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAAC-YKHIAIYSHGK--LTEVP--ISYNSSCVALSNDKQFVAVGG 155 (299)
T ss_dssp ECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEE-SSEEEEEETTE--EEEEE--CSSCEEEEEECTTSCEEEEEE
T ss_pred eccCCccccccccccccccccccccccccccccccccc-ccccccccccc--ccccc--ccccccccccccccccccccc
Confidence 99854322 122334667889999999999777665 56899999542 22222 345688999999999999999
Q ss_pred CCCeEEEEECCCCeEEE-EeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceE--EEeeccCCCEEEEEEcC
Q 005096 332 KDQIIKLYDIRAMKELE-SFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQV--EIHNVHDNTVWDLAWHP 408 (715)
Q Consensus 332 ~dg~I~iwDl~t~~~~~-~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~--~~~~~h~~~V~~l~~sp 408 (715)
.|+.|++||+++.+... ....|...|++++|++ ++.+|++++.|+.|++||+.+..... .....|...|++++|++
T Consensus 156 ~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 234 (299)
T d1nr0a2 156 QDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSN-NGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSP 234 (299)
T ss_dssp TTSEEEEEEEETTEEEEEEEEECSSCEEEEEECT-TSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECT
T ss_pred cccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999877654 3456889999999999 88999999999999999997765432 23456889999999999
Q ss_pred CCCEEEEEECCCeEEEEecCCCCC
Q 005096 409 IGYLLCSGSNDHTTKFWCRNRPGD 432 (715)
Q Consensus 409 dg~~L~sgs~Dg~I~iWdl~~~~~ 432 (715)
++.+|++++.||.|+|||++....
T Consensus 235 ~~~~l~sgs~dg~i~iwd~~~~~~ 258 (299)
T d1nr0a2 235 DNVRLATGSLDNSVIVWNMNKPSD 258 (299)
T ss_dssp TSSEEEEEETTSCEEEEETTCTTS
T ss_pred cccceEEEcCCCEEEEEECCCCCc
Confidence 999999999999999999976544
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=1.8e-30 Score=268.86 Aligned_cols=288 Identities=14% Similarity=0.054 Sum_probs=220.7
Q ss_pred EecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceE---EEEeccCCCEEEEEEcCCC-CEEEEEeCCCcEEEE
Q 005096 138 TSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFE---MILQAHDHAIRSMVWSHND-NWMVSGDDGGAIKYW 213 (715)
Q Consensus 138 ~~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~---~~l~~h~~~V~~l~~spdg-~~L~tgs~dg~I~iw 213 (715)
..+++|++.|++|+|+|++++||+|+.||+|+|||+++.... .....|...|.+++|++++ .+|++|+.|+.|++|
T Consensus 5 ~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w 84 (342)
T d1yfqa_ 5 QIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKV 84 (342)
T ss_dssp ECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEE
T ss_pred EcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeee
Confidence 367899999999999999999999999999999998765433 2334699999999999865 578999999999999
Q ss_pred eCCCCceeeeecCCCC-CeEEEEEecCCCEEEEEECCCcEEEEECCCCeeE----EEecc--cCCceEEEEEcCCCCEEE
Q 005096 214 QNNMNNVKANKSAHKE-SVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEE----RSLTG--HGWDVKSVDWHPTKSLLV 286 (715)
Q Consensus 214 d~~~~~~~~~~~~h~~-~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~----~~l~~--~~~~I~si~~spdg~~L~ 286 (715)
++...........+.. ......+..+...+++++.|+++++||++..... ..... .......+.+..+++.++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (342)
T d1yfqa_ 85 DLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLI 164 (342)
T ss_dssp CSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEE
T ss_pred ecccccccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCCcee
Confidence 9988776665554444 4455566778899999999999999998543322 22222 223345667777889999
Q ss_pred EEeCCCcEEEEECCCCceeE---EeccCCCceEEEEEcC-CCCEEEEEECCCeEEEEECCCCeEE---------E-----
Q 005096 287 SGGKDSLVKLWDAKSGRELC---SFHGHKNMVLCVKWNQ-NGNWVLTASKDQIIKLYDIRAMKEL---------E----- 348 (715)
Q Consensus 287 sgs~Dg~I~iwDl~s~~~~~---~~~~~~~~I~sl~~sp-dg~~Lasgs~dg~I~iwDl~t~~~~---------~----- 348 (715)
+++.|+.|++||++..+... ........+.++.+.+ ++..+++++.||.+.+|++...... .
T Consensus 165 ~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 244 (342)
T d1yfqa_ 165 VGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLN 244 (342)
T ss_dssp EEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCC
T ss_pred eecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeeec
Confidence 99999999999998765432 2233445566665554 7789999999999999998643221 1
Q ss_pred -EeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEec
Q 005096 349 -SFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCR 427 (715)
Q Consensus 349 -~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl 427 (715)
....|...|++|+|+| ++.+|++|+.||.|+|||+++.+.+..+...| .+..++|++++++|++++.|+.+++|..
T Consensus 245 ~~~~~~~~~v~~l~~sp-~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~~--~~~~~~~s~~~~~l~~a~sdd~~~~~~~ 321 (342)
T d1yfqa_ 245 LKDTNLAYPVNSIEFSP-RHKFLYTAGSDGIISCWNLQTRKKIKNFAKFN--EDSVVKIACSDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp TTCCSSCCCEEEEEECT-TTCCEEEEETTSCEEEEETTTTEEEEECCCCS--SSEEEEEEECSSEEEEEEECTHHHHCSS
T ss_pred cCCCcccccceeEEecC-CccEEEEECCCCEEEEEECCCCcEEEEecCCC--CCEEEEEEeCCCEEEEEEcCCcEEEeee
Confidence 1124566799999999 78899999999999999999887665554434 4456777788999999999999998865
Q ss_pred C
Q 005096 428 N 428 (715)
Q Consensus 428 ~ 428 (715)
.
T Consensus 322 ~ 322 (342)
T d1yfqa_ 322 I 322 (342)
T ss_dssp S
T ss_pred e
Confidence 3
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=2.4e-29 Score=271.83 Aligned_cols=274 Identities=17% Similarity=0.222 Sum_probs=207.3
Q ss_pred EecCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc------eEEEEeccCCCEEEEEEc------C-CCCEEEEE
Q 005096 138 TSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFN------FEMILQAHDHAIRSMVWS------H-NDNWMVSG 204 (715)
Q Consensus 138 ~~l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~------~~~~l~~h~~~V~~l~~s------p-dg~~L~tg 204 (715)
...++|.+.|++|++++ ++|++++.|++|+|||..+.+ .......|...+..+... . +..+++++
T Consensus 8 ~~~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 85 (393)
T d1sq9a_ 8 NAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATT 85 (393)
T ss_dssp EESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEE
T ss_pred ecCCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEE
Confidence 45789999999999864 689999999999999976543 233344455554433321 1 23467889
Q ss_pred eCCCcEEEEeCCCCceeee----------ecCCCCCeEEEEEecC-----CCEEEEEECCCcEEEEECCCCe--------
Q 005096 205 DDGGAIKYWQNNMNNVKAN----------KSAHKESVRDLSFCRT-----DLKFCSCSDDTTVKVWDFARCQ-------- 261 (715)
Q Consensus 205 s~dg~I~iwd~~~~~~~~~----------~~~h~~~I~~l~~spd-----~~~Las~s~Dg~V~iwdl~~~~-------- 261 (715)
+.||.|++|++........ ...+...+..++|..+ +.++++++.|++|++||+....
T Consensus 86 ~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~ 165 (393)
T d1sq9a_ 86 SFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTL 165 (393)
T ss_dssp ETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTT
T ss_pred eCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeee
Confidence 9999999998654321111 1234456778888765 3678999999999999974211
Q ss_pred ----------eEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEe------ccCCCceEEEEEcCCCC
Q 005096 262 ----------EERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSF------HGHKNMVLCVKWNQNGN 325 (715)
Q Consensus 262 ----------~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~------~~~~~~I~sl~~spdg~ 325 (715)
.......+...+.+++|++++ +|++|+.|++|+|||+++++.+..+ .+|...|++|+|+||++
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~ 244 (393)
T d1sq9a_ 166 NWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGS 244 (393)
T ss_dssp CCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTT
T ss_pred eeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccccc
Confidence 011122345568899999987 8999999999999999998877654 46788999999999999
Q ss_pred EEEEEECCC---eEEEEECCCCeEEEEee-------------cCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCc
Q 005096 326 WVLTASKDQ---IIKLYDIRAMKELESFR-------------GHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETP 389 (715)
Q Consensus 326 ~Lasgs~dg---~I~iwDl~t~~~~~~~~-------------~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~ 389 (715)
+|++|+.|+ .|+|||+++++.+..+. +|...|++|+|++ ++++|++++.|++|+|||++++..
T Consensus 245 ~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fsp-d~~~l~S~s~D~~v~vWd~~~g~~ 323 (393)
T d1sq9a_ 245 LLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFND-SGETLCSAGWDGKLRFWDVKTKER 323 (393)
T ss_dssp EEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECS-SSSEEEEEETTSEEEEEETTTTEE
T ss_pred eeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCC-CCCeeEEECCCCEEEEEECCCCCE
Confidence 999999887 59999999998887764 7999999999999 889999999999999999988765
Q ss_pred eEEEeeccCCCEE----EEEEcCCCCEEEEE
Q 005096 390 QVEIHNVHDNTVW----DLAWHPIGYLLCSG 416 (715)
Q Consensus 390 ~~~~~~~h~~~V~----~l~~spdg~~L~sg 416 (715)
+ ..+.+|.+.|. .++|++++..++++
T Consensus 324 ~-~~l~gH~~~v~~~~~~~~~~~~~~~~~~~ 353 (393)
T d1sq9a_ 324 I-TTLNMHCDDIEIEEDILAVDEHGDSLAEP 353 (393)
T ss_dssp E-EEEECCGGGCSSGGGCCCBCTTSCBCSSC
T ss_pred E-EEECCcCCcccCCccEEEECCCCCEEEEc
Confidence 4 44567876654 36677777665544
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=1.9e-28 Score=254.15 Aligned_cols=251 Identities=23% Similarity=0.389 Sum_probs=204.6
Q ss_pred EeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCC
Q 005096 171 WNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDT 250 (715)
Q Consensus 171 wd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg 250 (715)
|+..+.+..+++++|++.|.+ +++.++++||||+.||+|+|||+.+++.+..+.+|...|.+++|++ ++|++++.|+
T Consensus 1 W~~~~~~~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~--~~l~s~s~D~ 77 (342)
T d2ovrb2 1 WRRGELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRD--NIIISGSTDR 77 (342)
T ss_dssp HHHSCCCCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEET--TEEEEEETTS
T ss_pred CCCCCCCcCEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCC--Cccccceecc
Confidence 666677888899999998765 3555789999999999999999999999999999999999999986 4999999999
Q ss_pred cEEEEECCCCeeEEEecccCCceEE--------------------------------------EEEcCCCCEEEEEeCCC
Q 005096 251 TVKVWDFARCQEERSLTGHGWDVKS--------------------------------------VDWHPTKSLLVSGGKDS 292 (715)
Q Consensus 251 ~V~iwdl~~~~~~~~l~~~~~~I~s--------------------------------------i~~spdg~~L~sgs~Dg 292 (715)
++++|+............+...+.. ..+......+++++.|+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 157 (342)
T d2ovrb2 78 TLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDF 157 (342)
T ss_dssp CEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTS
T ss_pred cccccccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCC
Confidence 9999998765544333222211111 11222345678888999
Q ss_pred cEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEE
Q 005096 293 LVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVS 372 (715)
Q Consensus 293 ~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~s 372 (715)
.|++||++..+.+..+.+|...+.++.+ ++.+|++++.||.|++||+++++.+..+..|...+.+++++ +++|++
T Consensus 158 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~---~~~l~s 232 (342)
T d2ovrb2 158 MVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK---DNILVS 232 (342)
T ss_dssp CEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE---TTEEEE
T ss_pred eEEEeecccceeeEEEcCcccccccccC--CCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEecC---CCEEEE
Confidence 9999999998888888888877766655 68899999999999999999999999999999999999885 469999
Q ss_pred EeCCCcEEEEEcCCCCceEEEee--ccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCCCC
Q 005096 373 GSLDGSIFHWLVGHETPQVEIHN--VHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPG 431 (715)
Q Consensus 373 gs~DG~I~iwd~~~~~~~~~~~~--~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~ 431 (715)
++.||.|++||+........+.. .|...+.++.++ +.+|++++.||+|+|||++...
T Consensus 233 ~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~s~Dg~i~iwd~~tg~ 291 (342)
T d2ovrb2 233 GNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGE 291 (342)
T ss_dssp EETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCC
T ss_pred EcCCCEEEEEecccccccccccccceeeeceeecccC--CCeeEEEcCCCEEEEEECCCCC
Confidence 99999999999988776555443 355677777775 6799999999999999997643
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=4.8e-28 Score=252.53 Aligned_cols=243 Identities=21% Similarity=0.364 Sum_probs=188.7
Q ss_pred EEEEeccCCCE-EEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEEC
Q 005096 179 EMILQAHDHAI-RSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDF 257 (715)
Q Consensus 179 ~~~l~~h~~~V-~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl 257 (715)
..++++|...| +|++| ++++|++|+.||+|+|||+.+++.+..+.+|...|.+|+|+++ .+|++++.|++|++|++
T Consensus 5 ~~tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~ 81 (355)
T d1nexb2 5 RTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDI 81 (355)
T ss_dssp EEEEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEET
T ss_pred cEEECCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCC-CEEEEEecccccccccc
Confidence 45688998875 66665 5889999999999999999999999999999999999999975 68999999999999999
Q ss_pred CCCeeEEEecccCC--ceEEEEEcCCCCEE--------------------------------------------------
Q 005096 258 ARCQEERSLTGHGW--DVKSVDWHPTKSLL-------------------------------------------------- 285 (715)
Q Consensus 258 ~~~~~~~~l~~~~~--~I~si~~spdg~~L-------------------------------------------------- 285 (715)
...+.......... .+..+.++++++++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (355)
T d1nexb2 82 KKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHM 161 (355)
T ss_dssp TTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCS
T ss_pred cccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeecc
Confidence 87765544432221 22233334444444
Q ss_pred -------------EEEeCCCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeec
Q 005096 286 -------------VSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRG 352 (715)
Q Consensus 286 -------------~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~ 352 (715)
+++..|+.|++||+++++.+..+..+...+.++.|+++++++++++.|+.|++||++++..+..+.+
T Consensus 162 ~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~ 241 (355)
T d1nexb2 162 ASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQG 241 (355)
T ss_dssp SCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECC
T ss_pred ccccccccccceeeeecccceeeeeecccccceeeeeccccccccccccccceeeecccccceEEeeecccccccccccc
Confidence 4444455555555555555555556677788999999999999999999999999999999999999
Q ss_pred CCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEE-EEcCCCCEEEEEECCCeEEEEecCCCC
Q 005096 353 HRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDL-AWHPIGYLLCSGSNDHTTKFWCRNRPG 431 (715)
Q Consensus 353 h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l-~~spdg~~L~sgs~Dg~I~iWdl~~~~ 431 (715)
|...|.+++++ +++|++++.||.|++||+++...... .|...+.++ .+++++.+|+++ .|+.|+|||++...
T Consensus 242 h~~~v~~~~~~---~~~l~~~~~dg~i~iwd~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~g-~d~~i~vwd~~tg~ 314 (355)
T d1nexb2 242 HTALVGLLRLS---DKFLVSAAADGSIRGWDANDYSRKFS---YHHTNLSAITTFYVSDNILVSG-SENQFNIYNLRSGK 314 (355)
T ss_dssp CSSCCCEEEEC---SSEEEEECTTSEEEEEETTTCCEEEE---EECTTCCCCCEEEECSSEEEEE-ETTEEEEEETTTCC
T ss_pred ccccccccccc---cceeeeeecccccccccccccceecc---cccCCceEEEEEcCCCCEEEEE-eCCEEEEEECCCCC
Confidence 99999999995 57999999999999999987764333 345555554 456677776665 58999999997643
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.96 E-value=8.1e-29 Score=260.83 Aligned_cols=276 Identities=9% Similarity=0.024 Sum_probs=217.8
Q ss_pred EEEEcC-CCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCC--CcEEEEeCCCCceeeeec
Q 005096 149 RVLWTP-TGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDG--GAIKYWQNNMNNVKANKS 225 (715)
Q Consensus 149 ~l~~sp-dg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~d--g~I~iwd~~~~~~~~~~~ 225 (715)
.-.||| ||++||+++. |.|+|||++++..+.. .|...|.+++|++|+++|++++.+ ..|++||+++++.. .+.
T Consensus 7 ~~~fSP~dG~~~a~~~~-g~v~v~d~~~~~~~~~--~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~-~~~ 82 (360)
T d1k32a3 7 AEDFSPLDGDLIAFVSR-GQAFIQDVSGTYVLKV--PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAE-KFE 82 (360)
T ss_dssp EEEEEECGGGCEEEEET-TEEEEECTTSSBEEEC--SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEE-ECC
T ss_pred cccccCCCCCEEEEEEC-CeEEEEECCCCcEEEc--cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEE-Eee
Confidence 457999 9999998874 7899999998876653 689999999999999999876654 37999999987765 456
Q ss_pred CCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEe----------CCCcEE
Q 005096 226 AHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGG----------KDSLVK 295 (715)
Q Consensus 226 ~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs----------~Dg~I~ 295 (715)
.|...|.+++|++|+++|++++.++.+++|++.+++....+..+...+.+++|++|+++|+++. .++.++
T Consensus 83 ~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~ 162 (360)
T d1k32a3 83 ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIH 162 (360)
T ss_dssp CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEE
T ss_pred CCCceEEeeeecccccccceeccccccccccccccceeeeeecccccccchhhccceeeeeeeccccccceeecccccee
Confidence 8899999999999999999999999999999999999999998999999999999999998654 344689
Q ss_pred EEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeE-------EEEeecC---------------
Q 005096 296 LWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKE-------LESFRGH--------------- 353 (715)
Q Consensus 296 iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~-------~~~~~~h--------------- 353 (715)
+||+.+++... +..+...+.+++|++||++|++++.++.+++||...... ...+..+
T Consensus 163 v~d~~~~~~~~-~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 241 (360)
T d1k32a3 163 VYDMEGRKIFA-ATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMT 241 (360)
T ss_dssp EEETTTTEEEE-CSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGS
T ss_pred eeccccCceee-ecccccccccccccCCCCEEEEEeCCCceEcccccccceeeccccceEEEecccCccccceECCCcCc
Confidence 99999876554 444677889999999999999999999999998754322 1111111
Q ss_pred ---------------------CCCeEEEEEccCCCC-------------EEEEEeCCCcEEEEEcCCCCceEEEeeccCC
Q 005096 354 ---------------------RKDVTALAWHPFHEE-------------YFVSGSLDGSIFHWLVGHETPQVEIHNVHDN 399 (715)
Q Consensus 354 ---------------------~~~V~~l~~sp~~~~-------------~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~ 399 (715)
......+...+ +.. ++++++.++.|++||+.+.+.. .|.+
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~-----~~~~ 315 (360)
T d1k32a3 242 SEAGEYDLNDMYKRSSPINVDPGDYRMIIPLE-SSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVT-----EVKN 315 (360)
T ss_dssp CCCCCCCCTTGGGGCEECSCCCBCEEEEEECS-SEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEE-----EEEE
T ss_pred ccccceeecccccceeecccCcCceeEeeecC-CCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCeEE-----EecC
Confidence 11122333322 111 2345556889999999876432 2345
Q ss_pred CEEEEEEcCCCCEEEEEECCCeEEEEecCCCCCccc
Q 005096 400 TVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGDTAR 435 (715)
Q Consensus 400 ~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~~~~~ 435 (715)
.|.+++|++||++|++++.||.|++||+++.+.+..
T Consensus 316 ~v~~~~~SpDG~~l~~~~~Dg~i~v~d~~~~~~~~~ 351 (360)
T d1k32a3 316 NLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERT 351 (360)
T ss_dssp EEEEEEECTTSCEEEEEETTSCEEEEESSCTTSCEE
T ss_pred CcCEEEECCCCCEEEEEECCCeEEEEECCCCCcceE
Confidence 699999999999999999999999999987666443
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=2.3e-26 Score=232.88 Aligned_cols=257 Identities=25% Similarity=0.447 Sum_probs=215.0
Q ss_pred EeeehhhheeeEEEEEeccCCCccccccCchhhhcCccceeecCCCCCceeeeEEEEecCCCCccEEEEEEcCCCCEEEE
Q 005096 82 VDYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSFAAKFVHTSLNKNRCSINRVLWTPTGRRLIT 161 (715)
Q Consensus 82 ~~~~~~~~~~~~irvW~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~~l~~spdg~~Lat 161 (715)
..++.+...+++||+|+....+ +..++.+|.+.|++|+| ++++|++
T Consensus 25 ~~~l~sgs~Dg~i~vWd~~~~~--------------------------------~~~~l~~H~~~V~~v~~--~~~~l~s 70 (293)
T d1p22a2 25 DQKIVSGLRDNTIKIWDKNTLE--------------------------------CKRILTGHTGSVLCLQY--DERVIIT 70 (293)
T ss_dssp SSEEEEEESSSCEEEEESSSCC--------------------------------EEEEECCCSSCEEEEEC--CSSEEEE
T ss_pred CCEEEEEeCCCeEEEEECCCCc--------------------------------EEEEEecCCCCEeeeec--ccceeec
Confidence 4577788889999999865322 12356799999999988 6789999
Q ss_pred EeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc---eeeeecCCCCCeEEEEEec
Q 005096 162 GSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNN---VKANKSAHKESVRDLSFCR 238 (715)
Q Consensus 162 gs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~---~~~~~~~h~~~I~~l~~sp 238 (715)
|+.|+.|++|++..+........+.....+ +......++++..++.+.+|+..... ....+..|...|.++.+.
T Consensus 71 ~s~D~~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~- 147 (293)
T d1p22a2 71 GSSDSTVRVWDVNTGEMLNTLIHHCEAVLH--LRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD- 147 (293)
T ss_dssp EETTSCEEEEESSSCCEEEEECCCCSCEEE--EECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE-
T ss_pred cccccccccccccccccccccccccccccc--ccccccceeecccccceeEeeccccccccccccccccccccccceec-
Confidence 999999999999998888777766555443 44566789999999999999987754 344456778888877775
Q ss_pred CCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCceEEE
Q 005096 239 TDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCV 318 (715)
Q Consensus 239 d~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl 318 (715)
...+++++.|+.|++||+++.+.+..+.++...|..+.++ +.+|++++.|+.|+|||+++.+.+..+..+...+.++
T Consensus 148 -~~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~ 224 (293)
T d1p22a2 148 -DKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCI 224 (293)
T ss_dssp -TTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEE
T ss_pred -ccccccccCCCceeeecCCCCcEEEEEcccccccccccCC--CCeEEEecCCCEEEEEecccceeeeeecccceeeeec
Confidence 4678899999999999999999999999999899888886 6789999999999999999999999999888888764
Q ss_pred EEcCCCCEEEEEECCCeEEEEECCC---------CeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEE
Q 005096 319 KWNQNGNWVLTASKDQIIKLYDIRA---------MKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWL 383 (715)
Q Consensus 319 ~~spdg~~Lasgs~dg~I~iwDl~t---------~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd 383 (715)
+.++.+|++++.||.|+|||+++ ...+..+.+|...|++++|+ +.+|++++.||+|+|||
T Consensus 225 --~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d---~~~l~s~s~Dg~i~iWD 293 (293)
T d1p22a2 225 --RFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD---EFQIVSSSHDDTILIWD 293 (293)
T ss_dssp --ECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEEC---SSCEEECCSSSEEEEEC
T ss_pred --cccceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEEc---CCEEEEEecCCEEEEeC
Confidence 45788999999999999999753 34678889999999999994 56899999999999997
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=1.1e-26 Score=239.93 Aligned_cols=254 Identities=11% Similarity=0.124 Sum_probs=197.4
Q ss_pred ceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcee---eeecCCCCCeEEEEEecCC-CEEEEEECCCcE
Q 005096 177 NFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVK---ANKSAHKESVRDLSFCRTD-LKFCSCSDDTTV 252 (715)
Q Consensus 177 ~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~---~~~~~h~~~I~~l~~spd~-~~Las~s~Dg~V 252 (715)
+++...++|++.|++|+|++++++||+|+.||+|+|||++..... .....|...|.+++|++++ .+|++|+.|++|
T Consensus 2 ~~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v 81 (342)
T d1yfqa_ 2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEI 81 (342)
T ss_dssp EEEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCE
T ss_pred CeEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccce
Confidence 456677899999999999999999999999999999998765432 2234689999999999865 579999999999
Q ss_pred EEEECCCCeeEEEecccCCc-eEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEe----cc--CCCceEEEEEcCCCC
Q 005096 253 KVWDFARCQEERSLTGHGWD-VKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSF----HG--HKNMVLCVKWNQNGN 325 (715)
Q Consensus 253 ~iwdl~~~~~~~~l~~~~~~-I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~----~~--~~~~I~sl~~spdg~ 325 (715)
++|++...........+... .....+..+...+++++.|+.+++||+++....... .. .......+.+..+++
T Consensus 82 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (342)
T d1yfqa_ 82 LKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSS 161 (342)
T ss_dssp EEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSS
T ss_pred eeeecccccccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCC
Confidence 99999887776666554443 345556667889999999999999998754433222 11 223345667777889
Q ss_pred EEEEEECCCeEEEEECCCCeEE---EEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceE------EE---
Q 005096 326 WVLTASKDQIIKLYDIRAMKEL---ESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQV------EI--- 393 (715)
Q Consensus 326 ~Lasgs~dg~I~iwDl~t~~~~---~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~------~~--- 393 (715)
.+++++.|+.|++||++..+.. .........+.++.+.+.++..+++++.||.+.+|+++...... ..
T Consensus 162 ~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~ 241 (342)
T d1yfqa_ 162 RLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCH 241 (342)
T ss_dssp EEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECC
T ss_pred ceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeee
Confidence 9999999999999999876543 33334556677777777688899999999999999986543211 11
Q ss_pred -----eeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCCC
Q 005096 394 -----HNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRP 430 (715)
Q Consensus 394 -----~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~ 430 (715)
...|...|++|+|++++.+|++|+.||.|+|||++..
T Consensus 242 ~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~ 283 (342)
T d1yfqa_ 242 RLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTR 283 (342)
T ss_dssp CCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTT
T ss_pred eeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCC
Confidence 1235667999999999999999999999999999753
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=2.1e-26 Score=236.09 Aligned_cols=265 Identities=14% Similarity=0.168 Sum_probs=210.3
Q ss_pred CCCCcccchhhhhcccccccceEeeehhhheeeEEEEEeccCCCccccccCchhhhcCccceeecCCCCCceeeeEEEEe
Q 005096 60 PYDAHGDSFAAKRMRKLTQRRAVDYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSFAAKFVHTS 139 (715)
Q Consensus 60 ~~~~h~~~~~~~r~~~~~~~~~~~~~~~~~~~~~irvW~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 139 (715)
.+.+|...|.+..+.. +.+...+++|++|+... .
T Consensus 8 ~l~gH~~~I~~l~~s~---------l~sgs~Dg~v~~Wd~~~-------------------------------------~ 41 (287)
T d1pgua2 8 TISGHNKGITALTVNP---------LISGSYDGRIMEWSSSS-------------------------------------M 41 (287)
T ss_dssp EECCCSSCEEEEETTT---------TEEEETTSCEEETTTTE-------------------------------------E
T ss_pred EECCCCCceEEEEECc---------EEEEeCCCeEEEEECCC-------------------------------------C
Confidence 4677887777765532 55677889999997431 1
Q ss_pred cCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc
Q 005096 140 LNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNN 219 (715)
Q Consensus 140 l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~ 219 (715)
..+|...|.+++|++++ .|++++.|++|++|++.+. .....+.++++++++..++++ .++.+.+|+..+++
T Consensus 42 ~~~h~~~V~~~~~~~~~-~~~s~s~D~~v~~w~~~~~-------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 112 (287)
T d1pgua2 42 HQDHSNLIVSLDNSKAQ-EYSSISWDDTLKVNGITKH-------EFGSQPKVASANNDGFTAVLT-NDDDLLILQSFTGD 112 (287)
T ss_dssp ECCCCSCEEEEECCSTT-CCEEEETTTEEEETTEEEE-------ECSSCEEEEEECSSSEEEEEE-TTSEEEEEETTTCC
T ss_pred CCCCCCCEEEEEecCCC-eEEEEeecccccccccccc-------ccccceeeeeeccCCceEEEe-ecccceeeecccee
Confidence 24689999999999765 6899999999999996542 234567888998887666655 55678899988888
Q ss_pred eeeeecCCCCCeEEEEEecCCCEEEEEECCC-cEEEEECCCCeeEEEec-ccCCceEEEEEcCCCCEEEEEeCCCcEEEE
Q 005096 220 VKANKSAHKESVRDLSFCRTDLKFCSCSDDT-TVKVWDFARCQEERSLT-GHGWDVKSVDWHPTKSLLVSGGKDSLVKLW 297 (715)
Q Consensus 220 ~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg-~V~iwdl~~~~~~~~l~-~~~~~I~si~~spdg~~L~sgs~Dg~I~iw 297 (715)
....+..+ .. ..++++++..+++++.|+ .|++|++.+.+....+. .+...|++++|++++++|++++.|+.|++|
T Consensus 113 ~~~~~~~~-~~--~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~ 189 (287)
T d1pgua2 113 IIKSVRLN-SP--GSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLY 189 (287)
T ss_dssp EEEEEECS-SC--EEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred eeeecccc-ce--eeeeeccCcceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCccccccccccccccce
Confidence 77766543 33 345667788888888765 79999997766655554 466789999999999999999999999999
Q ss_pred ECCCCceeE-EeccCCCceEEEEEcCC----------CCEEEEEECCCeEEEEECCC-CeEEEEeecCCCCeEEEEEccC
Q 005096 298 DAKSGRELC-SFHGHKNMVLCVKWNQN----------GNWVLTASKDQIIKLYDIRA-MKELESFRGHRKDVTALAWHPF 365 (715)
Q Consensus 298 Dl~s~~~~~-~~~~~~~~I~sl~~spd----------g~~Lasgs~dg~I~iwDl~t-~~~~~~~~~h~~~V~~l~~sp~ 365 (715)
|+.+++.+. .+..|...|.+++|+++ +.+|++|+.|+.|+|||+++ .+.+..+.+|...|++++|++
T Consensus 190 d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~- 268 (287)
T d1pgua2 190 DLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWET- 268 (287)
T ss_dssp ETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEE-
T ss_pred eecccccccccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECC-
Confidence 999887654 35678999999999864 56899999999999999977 566777889999999999998
Q ss_pred CCCEEEEEeCCCcEEEEEc
Q 005096 366 HEEYFVSGSLDGSIFHWLV 384 (715)
Q Consensus 366 ~~~~l~sgs~DG~I~iwd~ 384 (715)
+ ..|++++.|+.|++|++
T Consensus 269 ~-~~l~s~g~D~~v~iW~i 286 (287)
T d1pgua2 269 P-STLVSSGADACIKRWNV 286 (287)
T ss_dssp T-TEEEEEETTSCEEEEEE
T ss_pred C-CEEEEEECCCeEEEEEE
Confidence 4 46889999999999986
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=2.6e-26 Score=247.74 Aligned_cols=214 Identities=16% Similarity=0.293 Sum_probs=169.5
Q ss_pred CCEEEEEeCCCeEEEEeCCCCceEE-----EE-----eccCCCEEEEEEcCC-----CCEEEEEeCCCcEEEEeCCCCc-
Q 005096 156 GRRLITGSQSGEFTLWNGQSFNFEM-----IL-----QAHDHAIRSMVWSHN-----DNWMVSGDDGGAIKYWQNNMNN- 219 (715)
Q Consensus 156 g~~Latgs~dg~I~Iwd~~~~~~~~-----~l-----~~h~~~V~~l~~spd-----g~~L~tgs~dg~I~iwd~~~~~- 219 (715)
+.++++++.||.|++|++....... .. ..+...+..++|..+ +.++++++.||.|++|++....
T Consensus 79 ~~~~~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~ 158 (393)
T d1sq9a_ 79 LCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFAD 158 (393)
T ss_dssp EEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSS
T ss_pred CcEEEEEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCc
Confidence 3467899999999999865432211 11 124466888888765 3678999999999999974221
Q ss_pred -----------------eeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEe------cccCCceEEE
Q 005096 220 -----------------VKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSL------TGHGWDVKSV 276 (715)
Q Consensus 220 -----------------~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l------~~~~~~I~si 276 (715)
.......+...+.+++|++++ +|++|+.|++|+|||+.+++.+..+ .+|...|++|
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l 237 (393)
T d1sq9a_ 159 ESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSV 237 (393)
T ss_dssp HHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEE
T ss_pred ccceeeeeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEc
Confidence 111123445668999999987 8999999999999999998876654 4688899999
Q ss_pred EEcCCCCEEEEEeCCCc---EEEEECCCCceeEEec-------------cCCCceEEEEEcCCCCEEEEEECCCeEEEEE
Q 005096 277 DWHPTKSLLVSGGKDSL---VKLWDAKSGRELCSFH-------------GHKNMVLCVKWNQNGNWVLTASKDQIIKLYD 340 (715)
Q Consensus 277 ~~spdg~~L~sgs~Dg~---I~iwDl~s~~~~~~~~-------------~~~~~I~sl~~spdg~~Lasgs~dg~I~iwD 340 (715)
+|+||+++|++|+.|+. |+|||+++++.+..+. +|.+.|++|+|++|+++|++++.|++|+|||
T Consensus 238 ~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd 317 (393)
T d1sq9a_ 238 KFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWD 317 (393)
T ss_dssp EECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEE
T ss_pred ccccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEE
Confidence 99999999999999874 8999999998887764 6889999999999999999999999999999
Q ss_pred CCCCeEEEEeecCCCCeE----EEEEccCCCCEEE
Q 005096 341 IRAMKELESFRGHRKDVT----ALAWHPFHEEYFV 371 (715)
Q Consensus 341 l~t~~~~~~~~~h~~~V~----~l~~sp~~~~~l~ 371 (715)
+++++++.++++|...|. .++|++ ++..++
T Consensus 318 ~~~g~~~~~l~gH~~~v~~~~~~~~~~~-~~~~~~ 351 (393)
T d1sq9a_ 318 VKTKERITTLNMHCDDIEIEEDILAVDE-HGDSLA 351 (393)
T ss_dssp TTTTEEEEEEECCGGGCSSGGGCCCBCT-TSCBCS
T ss_pred CCCCCEEEEECCcCCcccCCccEEEECC-CCCEEE
Confidence 999999999999987664 366666 444444
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.92 E-value=2.7e-22 Score=205.08 Aligned_cols=264 Identities=13% Similarity=0.074 Sum_probs=209.5
Q ss_pred EEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEE-EEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEec
Q 005096 160 ITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMV-SGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCR 238 (715)
Q Consensus 160 atgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~-tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp 238 (715)
++++.|++|.|||+++++.++++... ..+..++|++||++|+ +++.++.|++||+.+++.+..+..+. .+..++|++
T Consensus 6 V~~~~~~~v~v~D~~t~~~~~~i~~g-~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~-~~~~~~~~~ 83 (301)
T d1l0qa2 6 IANSESDNISVIDVTSNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSP 83 (301)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECT
T ss_pred EEECCCCEEEEEECCCCeEEEEEECC-CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeeccc-ccccccccc
Confidence 45678899999999999999988754 5678999999999874 66788999999999999888876654 578899999
Q ss_pred CCCEEEE-EECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEE-EeCCCcEEEEECCCCceeEEeccCCCceE
Q 005096 239 TDLKFCS-CSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVS-GGKDSLVKLWDAKSGRELCSFHGHKNMVL 316 (715)
Q Consensus 239 d~~~Las-~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~s-gs~Dg~I~iwDl~s~~~~~~~~~~~~~I~ 316 (715)
++..+++ +..++.+++||..+++....+..+ ..+.+++|+++++.+++ +..++.+.+|+..+.+.+..+.. ...+.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 161 (301)
T d1l0qa2 84 DGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSV-GRSPK 161 (301)
T ss_dssp TSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-CSSEE
T ss_pred ccccccccccccceeeecccccceeeeecccc-ccceEEEeecCCCeeeeeeccccceeeeeccccceeeeccc-CCCce
Confidence 9987655 456778999999999888887744 56789999999997754 55678899999999988888764 45588
Q ss_pred EEEEcCCCCEEEEEECC-CeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEe--CCCcEEEEEcCCCCceEEE
Q 005096 317 CVKWNQNGNWVLTASKD-QIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGS--LDGSIFHWLVGHETPQVEI 393 (715)
Q Consensus 317 sl~~spdg~~Lasgs~d-g~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs--~DG~I~iwd~~~~~~~~~~ 393 (715)
+++++++++++++++.+ +.+.+|+....+....+. ....+..++|++++..+++++. .++.|++||..+.+....+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~ 240 (301)
T d1l0qa2 162 GIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARI 240 (301)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEE
T ss_pred EEEeeccccceeeecccccccccccccceeeeeccc-ccCCcceeeccccccccccccccceeeeeeeeecCCCeEEEEE
Confidence 99999999988888765 677788888777766665 4456788999994444444332 3468999999887665444
Q ss_pred eeccCCCEEEEEEcCCCCEE-EEEECCCeEEEEecCCC
Q 005096 394 HNVHDNTVWDLAWHPIGYLL-CSGSNDHTTKFWCRNRP 430 (715)
Q Consensus 394 ~~~h~~~V~~l~~spdg~~L-~sgs~Dg~I~iWdl~~~ 430 (715)
. +...+++++|++||++| ++++.|+.|++||++..
T Consensus 241 ~--~~~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~ 276 (301)
T d1l0qa2 241 P--VGPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATN 276 (301)
T ss_dssp E--CCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred c--CCCCEEEEEEeCCCCEEEEEECCCCeEEEEECCCC
Confidence 3 34578999999999876 57778999999999654
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.92 E-value=6.1e-24 Score=231.94 Aligned_cols=290 Identities=9% Similarity=0.057 Sum_probs=205.0
Q ss_pred cCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEE-----eccCCCEEEEEEcCCCCEEEE-EeCCCcEEEE
Q 005096 140 LNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMIL-----QAHDHAIRSMVWSHNDNWMVS-GDDGGAIKYW 213 (715)
Q Consensus 140 l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l-----~~h~~~V~~l~~spdg~~L~t-gs~dg~I~iw 213 (715)
+..| ..+..++|||||++|++++.|++|++||+.+++..... ..|...+.+++|++||++|++ +..++.|++|
T Consensus 58 l~~g-~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~ 136 (426)
T d1hzua2 58 IDTG-YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIM 136 (426)
T ss_dssp EECC-SSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEE
T ss_pred EeCC-CCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEE
Confidence 4444 35899999999999999999999999999988754433 245566777888899998754 5588999999
Q ss_pred eCCCCceeeeecCCCCCe-----------EEEEEecCCCEEEEEEC-CCcEEEEECCCCee-EEEecccCCceEEEEEcC
Q 005096 214 QNNMNNVKANKSAHKESV-----------RDLSFCRTDLKFCSCSD-DTTVKVWDFARCQE-ERSLTGHGWDVKSVDWHP 280 (715)
Q Consensus 214 d~~~~~~~~~~~~h~~~I-----------~~l~~spd~~~Las~s~-Dg~V~iwdl~~~~~-~~~l~~~~~~I~si~~sp 280 (715)
|..++.+...+..+...+ ..+.+++++..++.... .+.|.+++..+... ......+...+..++|++
T Consensus 137 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (426)
T d1hzua2 137 DGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDS 216 (426)
T ss_dssp ETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEECT
T ss_pred cCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEeccCCccEeeeECC
Confidence 999998877776555444 34455555555444333 34455555544332 222334677789999999
Q ss_pred CCCEEEEEe-CCCcEEEEECCCCceeEEeccC--CCceEEEEEcCCCC-EEE--EEECCCeEEEEECCC-------CeEE
Q 005096 281 TKSLLVSGG-KDSLVKLWDAKSGRELCSFHGH--KNMVLCVKWNQNGN-WVL--TASKDQIIKLYDIRA-------MKEL 347 (715)
Q Consensus 281 dg~~L~sgs-~Dg~I~iwDl~s~~~~~~~~~~--~~~I~sl~~spdg~-~La--sgs~dg~I~iwDl~t-------~~~~ 347 (715)
++++++++. .+..+.+||..+++.+..+... ......+.+..++. .+. ..+.|+.+.+|+... ++..
T Consensus 217 ~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~ 296 (426)
T d1hzua2 217 SHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKV 296 (426)
T ss_dssp TSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEE
T ss_pred CCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeeccccccccccceEe
Confidence 999887776 4567889999999887766422 22223333333322 222 233577888887654 4778
Q ss_pred EEeecCCCCeEEEEEccCCCCEEEE-------EeCCCcEEEEEcCCCCceEEEe--------eccCCCEEEEEEcCCCCE
Q 005096 348 ESFRGHRKDVTALAWHPFHEEYFVS-------GSLDGSIFHWLVGHETPQVEIH--------NVHDNTVWDLAWHPIGYL 412 (715)
Q Consensus 348 ~~~~~h~~~V~~l~~sp~~~~~l~s-------gs~DG~I~iwd~~~~~~~~~~~--------~~h~~~V~~l~~spdg~~ 412 (715)
.++.+|...+..++|+| ++.+|++ ++.|++|+|||+.+.+...++. ..+...|..++|++||++
T Consensus 297 ~~l~g~~~~v~~v~~sP-dg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~ 375 (426)
T d1hzua2 297 AELQGQGGGSLFIKTHP-KSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDE 375 (426)
T ss_dssp EEEECSSSCCCCEECCT-TCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSSSSE
T ss_pred EEEecCCCceeEEEcCC-CCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECCCCCE
Confidence 89999999999999999 7777774 4567899999998887665543 235667999999999987
Q ss_pred EEEE-----ECCCeEEEEecCCCC
Q 005096 413 LCSG-----SNDHTTKFWCRNRPG 431 (715)
Q Consensus 413 L~sg-----s~Dg~I~iWdl~~~~ 431 (715)
|+.+ +.||.|+|||.++.+
T Consensus 376 i~vs~~~~~~~~~~i~v~D~~T~k 399 (426)
T d1hzua2 376 VWFSVWNGKNDSSALVVVDDKTLK 399 (426)
T ss_dssp EEEEECCCTTSCCEEEEEETTTTE
T ss_pred EEEEEecCCCCCCeEEEEECCCCe
Confidence 7543 358899999986543
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.92 E-value=9.8e-24 Score=221.48 Aligned_cols=245 Identities=11% Similarity=0.027 Sum_probs=192.7
Q ss_pred CCCccEEEEEEcCCCCEEEEEeCCC--eEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc
Q 005096 142 KNRCSINRVLWTPTGRRLITGSQSG--EFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNN 219 (715)
Q Consensus 142 ~H~~~I~~l~~spdg~~Latgs~dg--~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~ 219 (715)
+|...|++++|+|||++|++++.+. .|++||+++++.. .+..|...|.+++|++|+++|++++.++.+++|++++++
T Consensus 40 ~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~-~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~ 118 (360)
T d1k32a3 40 PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAE-KFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGK 118 (360)
T ss_dssp SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEE-ECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEE-EeeCCCceEEeeeecccccccceeccccccccccccccc
Confidence 5889999999999999998776553 7999999887654 667899999999999999999999999999999999999
Q ss_pred eeeeecCCCCCeEEEEEecCCCEEEEEE----------CCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEe
Q 005096 220 VKANKSAHKESVRDLSFCRTDLKFCSCS----------DDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGG 289 (715)
Q Consensus 220 ~~~~~~~h~~~I~~l~~spd~~~Las~s----------~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs 289 (715)
....+..+...+.+++|++|+++|+.+. .++.+++||+.+++... +..+...+.+++|++||++|++++
T Consensus 119 ~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~-~~~~~~~~~~~~~spdg~~l~~~s 197 (360)
T d1k32a3 119 PTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFA-ATTENSHDYAPAFDADSKNLYYLS 197 (360)
T ss_dssp EEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEE-CSCSSSBEEEEEECTTSCEEEEEE
T ss_pred eeeeeecccccccchhhccceeeeeeeccccccceeeccccceeeeccccCceee-ecccccccccccccCCCCEEEEEe
Confidence 9888899999999999999999998654 34569999998876544 445677889999999999999999
Q ss_pred CCCcEEEEECCCCce-------eEEecc------------------------------------CCCceEEEEEcCCCC-
Q 005096 290 KDSLVKLWDAKSGRE-------LCSFHG------------------------------------HKNMVLCVKWNQNGN- 325 (715)
Q Consensus 290 ~Dg~I~iwDl~s~~~-------~~~~~~------------------------------------~~~~I~sl~~spdg~- 325 (715)
.|+.+++||...... +..+.. .......+...+++.
T Consensus 198 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (360)
T d1k32a3 198 YRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSIL 277 (360)
T ss_dssp SCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEE
T ss_pred CCCceEcccccccceeeccccceEEEecccCccccceECCCcCcccccceeecccccceeecccCcCceeEeeecCCCce
Confidence 999999998654321 111110 011223333333222
Q ss_pred ------------EEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEE
Q 005096 326 ------------WVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEI 393 (715)
Q Consensus 326 ------------~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~ 393 (715)
++++++.++.|++||+.+++... +...|.+++|+| ++++|++++.||.|++||++++.....+
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~----~~~~v~~~~~Sp-DG~~l~~~~~Dg~i~v~d~~~~~~~~~~ 352 (360)
T d1k32a3 278 IYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTE----VKNNLTDLRLSA-DRKTVMVRKDDGKIYTFPLEKPEDERTV 352 (360)
T ss_dssp EEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEE----EEEEEEEEEECT-TSCEEEEEETTSCEEEEESSCTTSCEEC
T ss_pred EEEEEecCCCeeEEEecCCCCEEEEEECCCCeEEE----ecCCcCEEEECC-CCCEEEEEECCCeEEEEECCCCCcceEE
Confidence 23445567899999998876432 334589999999 8999999999999999999887765444
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.91 E-value=1.5e-23 Score=229.69 Aligned_cols=285 Identities=10% Similarity=0.026 Sum_probs=193.5
Q ss_pred cCCCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce--EEEE---eccCCCEEEEEEcCCCCEE-EEEeCCCcEEEE
Q 005096 140 LNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNF--EMIL---QAHDHAIRSMVWSHNDNWM-VSGDDGGAIKYW 213 (715)
Q Consensus 140 l~~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~--~~~l---~~h~~~V~~l~~spdg~~L-~tgs~dg~I~iw 213 (715)
+..| ..+..++|||||++|++++.|+.|++||+.+++. +..+ ..|.+.+.+.+|++||++| ++++.++.|+||
T Consensus 58 ~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~ 136 (432)
T d1qksa2 58 LDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIM 136 (432)
T ss_dssp EECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEE
T ss_pred EeCC-CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEE
Confidence 3334 3599999999999999999999999999988764 3333 2455666777788999986 678889999999
Q ss_pred eCCCCceeeeecC-----------CCCCeEEEEEecCCCEEE-EEECCCcEEEEECCCCeeEEEec-ccCCceEEEEEcC
Q 005096 214 QNNMNNVKANKSA-----------HKESVRDLSFCRTDLKFC-SCSDDTTVKVWDFARCQEERSLT-GHGWDVKSVDWHP 280 (715)
Q Consensus 214 d~~~~~~~~~~~~-----------h~~~I~~l~~spd~~~La-s~s~Dg~V~iwdl~~~~~~~~l~-~~~~~I~si~~sp 280 (715)
|.++++.+..+.. +......+.+++++..++ +...++.|.+||..+.+...... .+...+.+++|++
T Consensus 137 d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~sp 216 (432)
T d1qksa2 137 DGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDG 216 (432)
T ss_dssp ETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECT
T ss_pred eCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEcccCccccceECC
Confidence 9999988776643 334566788999988764 55667999999998876544332 3556788999999
Q ss_pred CCCEEEEEeC-CCcEEEEECCCCceeEEecc-----CCCceEEEEEcCCCCEEEEEE-CCCeEEEEECCCC-------eE
Q 005096 281 TKSLLVSGGK-DSLVKLWDAKSGRELCSFHG-----HKNMVLCVKWNQNGNWVLTAS-KDQIIKLYDIRAM-------KE 346 (715)
Q Consensus 281 dg~~L~sgs~-Dg~I~iwDl~s~~~~~~~~~-----~~~~I~sl~~spdg~~Lasgs-~dg~I~iwDl~t~-------~~ 346 (715)
|++++++++. ++.|.++|.++++.+..+.. +........+...+...++.. .++.|.+|+.... +.
T Consensus 217 dg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~~~~~~~~v 296 (432)
T d1qksa2 217 SHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKI 296 (432)
T ss_dssp TSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSE
T ss_pred CCCEEEEeccccceEEEeecccceEEEEeccCccccccCcccceecCCCCceecccccCCceEEecccccccccccccEE
Confidence 9998777765 45788899988877665531 223334444444444333332 3567777765432 12
Q ss_pred EEEeecCCCC-------------------------eEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCE
Q 005096 347 LESFRGHRKD-------------------------VTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTV 401 (715)
Q Consensus 347 ~~~~~~h~~~-------------------------V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V 401 (715)
...+..+... ..++++ + +++.|++++.|+.+++|++.+...+ ..|...|
T Consensus 297 ~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~~~~~~~~sv~v-p-Dg~~la~~s~d~~~k~w~~~~~~~l----~~~~~~v 370 (432)
T d1qksa2 297 LDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAV-F-DIKAMTGDGSDPEFKTLPIAEWAGI----TEGQPRV 370 (432)
T ss_dssp EEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEE-E-EGGGCCCSSSCCCEEEECHHHHHTC----CSSCCEE
T ss_pred EEEEEcCCCCeEEEEecCCccceeecccCCCCCCeeeEEEE-E-echhhcccccCCceEeccccccccc----CCCCCcE
Confidence 2222211111 112222 3 5566667777777777776443221 2356689
Q ss_pred EEEEEcCCCCEEEEEE-----CCCeEEEEecCCCC
Q 005096 402 WDLAWHPIGYLLCSGS-----NDHTTKFWCRNRPG 431 (715)
Q Consensus 402 ~~l~~spdg~~L~sgs-----~Dg~I~iWdl~~~~ 431 (715)
.+++|++||++|+++. .||.|+|||..+.+
T Consensus 371 ~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D~~T~k 405 (432)
T d1qksa2 371 VQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLE 405 (432)
T ss_dssp EEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTE
T ss_pred EEeEECCCCCEEEEEEecCCCCCCcEEEEECCCce
Confidence 9999999999886654 47899999986643
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.90 E-value=1.9e-22 Score=209.14 Aligned_cols=268 Identities=6% Similarity=0.005 Sum_probs=207.3
Q ss_pred CEEEEEeCCCeEEEEeCCCCceEEEEecc--CCCEEEEEEcCCCCEE-EEEeCCCcEEEEeCCCCceeeeecCCC-----
Q 005096 157 RRLITGSQSGEFTLWNGQSFNFEMILQAH--DHAIRSMVWSHNDNWM-VSGDDGGAIKYWQNNMNNVKANKSAHK----- 228 (715)
Q Consensus 157 ~~Latgs~dg~I~Iwd~~~~~~~~~l~~h--~~~V~~l~~spdg~~L-~tgs~dg~I~iwd~~~~~~~~~~~~h~----- 228 (715)
++|++++.|++|+|||+++.+.+..+..+ ...+.+++|++||++| ++++.++.|.+||+.+++.+..+..+.
T Consensus 2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~ 81 (337)
T d1pbyb_ 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV 81 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccc
Confidence 47999999999999999999999988764 3567899999999987 466788999999999999887776543
Q ss_pred CCeEEEEEecCCCEEEEEE------------CCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEE
Q 005096 229 ESVRDLSFCRTDLKFCSCS------------DDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKL 296 (715)
Q Consensus 229 ~~I~~l~~spd~~~Las~s------------~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~i 296 (715)
..+..++|++++++++++. .+..+.+||..+.+.+..+.. ...+.+++|++|++++++++. .+.+
T Consensus 82 ~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~--~~~~ 158 (337)
T d1pbyb_ 82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGLGR--DLHV 158 (337)
T ss_dssp ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEESS--SEEE
T ss_pred cceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccc-cCCceEEEEcCCCCEEEEEcC--Ccce
Confidence 3456789999999988775 467899999999988888774 456889999999999998864 4788
Q ss_pred EECCCCceeEEeccCCCceEEEEEcC------------------------CCCEEEEEECCCeEEEEECCCCeEEE-Eee
Q 005096 297 WDAKSGRELCSFHGHKNMVLCVKWNQ------------------------NGNWVLTASKDQIIKLYDIRAMKELE-SFR 351 (715)
Q Consensus 297 wDl~s~~~~~~~~~~~~~I~sl~~sp------------------------dg~~Lasgs~dg~I~iwDl~t~~~~~-~~~ 351 (715)
||..+++.+..+..+... ....+++ +...+..++.++.+.+||+.+++... .+.
T Consensus 159 ~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (337)
T d1pbyb_ 159 MDPEAGTLVEDKPIQSWE-AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVR 237 (337)
T ss_dssp EETTTTEEEEEECSTTTT-TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEE
T ss_pred eeeecCcEEEEeecCCcc-ccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEec
Confidence 999998887776532211 1111111 11111222334579999999887654 355
Q ss_pred cCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCCCC
Q 005096 352 GHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPG 431 (715)
Q Consensus 352 ~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~ 431 (715)
.+...+..+.+++ ++.+++++ ++.|++||+.+.+.+..+. +...+.+++|++||++|++++.|+.|+|||.+..+
T Consensus 238 ~~~~~~~~~~~~~-~~~~~~~~--~~~i~v~d~~~~~~~~~~~--~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~ 312 (337)
T d1pbyb_ 238 IMDVFYFSTAVNP-AKTRAFGA--YNVLESFDLEKNASIKRVP--LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLE 312 (337)
T ss_dssp ECSSCEEEEEECT-TSSEEEEE--ESEEEEEETTTTEEEEEEE--CSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCC
T ss_pred CCCcceEEEEecc-cceEEEEc--cccEEEEECCCCcEEEEEc--CCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCc
Confidence 6777888899998 67777655 5799999999887766654 45678999999999999999999999999997644
Q ss_pred Cc
Q 005096 432 DT 433 (715)
Q Consensus 432 ~~ 433 (715)
..
T Consensus 313 ~v 314 (337)
T d1pbyb_ 313 KK 314 (337)
T ss_dssp EE
T ss_pred EE
Confidence 33
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.90 E-value=2e-20 Score=190.99 Aligned_cols=245 Identities=12% Similarity=0.110 Sum_probs=196.3
Q ss_pred ccEEEEEEcCCCCEEE-EEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEE-EEeCCCcEEEEeCCCCceee
Q 005096 145 CSINRVLWTPTGRRLI-TGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMV-SGDDGGAIKYWQNNMNNVKA 222 (715)
Q Consensus 145 ~~I~~l~~spdg~~La-tgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~-tgs~dg~I~iwd~~~~~~~~ 222 (715)
..+..++|++||++|+ +++.++.|++||+.+++.+..+..+. .+..++|++++++++ ++..++.+.+|+..+++...
T Consensus 32 ~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (301)
T d1l0qa2 32 SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAG 110 (301)
T ss_dssp SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeeccc-cccccccccccccccccccccceeeecccccceeee
Confidence 3578899999999885 56678999999999999999888765 578999999998665 55677889999999988777
Q ss_pred eecCCCCCeEEEEEecCCCEEEE-EECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCC-CcEEEEECC
Q 005096 223 NKSAHKESVRDLSFCRTDLKFCS-CSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKD-SLVKLWDAK 300 (715)
Q Consensus 223 ~~~~h~~~I~~l~~spd~~~Las-~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~D-g~I~iwDl~ 300 (715)
.+.. ...+.+++|++++..++. +..++.+.+|+..+.+.+..+.. ...+..++++++++.+++++.+ +.+.+|+..
T Consensus 111 ~~~~-~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (301)
T d1l0qa2 111 TVKT-GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSV-GRSPKGIAVTPDGTKVYVANFDSMSISVIDTV 188 (301)
T ss_dssp EEEC-SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-CSSEEEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred eccc-cccceEEEeecCCCeeeeeeccccceeeeeccccceeeeccc-CCCceEEEeeccccceeeeccccccccccccc
Confidence 7654 456788999999988765 45578899999999988888764 4568899999999988877765 567778877
Q ss_pred CCceeEEeccCCCceEEEEEcCCCCEEEEEEC---CCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCC
Q 005096 301 SGRELCSFHGHKNMVLCVKWNQNGNWVLTASK---DQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDG 377 (715)
Q Consensus 301 s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~---dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG 377 (715)
..+....+. ....+..++|+++++.+++++. ++.|++||+.+++.+..+.. ...+.+++|++++..++++++.|+
T Consensus 189 ~~~~~~~~~-~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~-~~~~~~va~spdg~~l~va~~~~~ 266 (301)
T d1l0qa2 189 TNSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPV-GPDPAGIAVTPDGKKVYVALSFCN 266 (301)
T ss_dssp TTEEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEEC-CSSEEEEEECTTSSEEEEEETTTT
T ss_pred ceeeeeccc-ccCCcceeeccccccccccccccceeeeeeeeecCCCeEEEEEcC-CCCEEEEEEeCCCCEEEEEECCCC
Confidence 766666555 4556788999999998877653 36899999999999888774 456899999994444557888899
Q ss_pred cEEEEEcCCCCceEEEe
Q 005096 378 SIFHWLVGHETPQVEIH 394 (715)
Q Consensus 378 ~I~iwd~~~~~~~~~~~ 394 (715)
.|++||+++.+.+..+.
T Consensus 267 ~i~v~D~~t~~~~~~~~ 283 (301)
T d1l0qa2 267 TVSVIDTATNTITATMA 283 (301)
T ss_dssp EEEEEETTTTEEEEEEE
T ss_pred eEEEEECCCCeEEEEEe
Confidence 99999998886655543
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.89 E-value=1.5e-22 Score=210.69 Aligned_cols=276 Identities=11% Similarity=-0.002 Sum_probs=204.9
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEec-cCCCEEEEEEcCCCCEEE-EEeCCCcEEEEeCCCCceeeeecCC
Q 005096 150 VLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQA-HDHAIRSMVWSHNDNWMV-SGDDGGAIKYWQNNMNNVKANKSAH 227 (715)
Q Consensus 150 l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~-h~~~V~~l~~spdg~~L~-tgs~dg~I~iwd~~~~~~~~~~~~h 227 (715)
++|++++++|++++.|++|.|||+++++.++++.. +...+.+++|++|+++|+ ++..++.|++||+.+++.+..+...
T Consensus 2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~ 81 (346)
T d1jmxb_ 2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLS 81 (346)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESC
T ss_pred ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeeccc
Confidence 47899999999999999999999999999998874 566788999999999874 5567899999999999887665432
Q ss_pred C------CCeEEEEEecCCCEEEEEE------------CCCcEEEEECCCCeeEEEecc--cCCceEEEEEcCCCCEEEE
Q 005096 228 K------ESVRDLSFCRTDLKFCSCS------------DDTTVKVWDFARCQEERSLTG--HGWDVKSVDWHPTKSLLVS 287 (715)
Q Consensus 228 ~------~~I~~l~~spd~~~Las~s------------~Dg~V~iwdl~~~~~~~~l~~--~~~~I~si~~spdg~~L~s 287 (715)
. ..+..++|++|++++++++ .+..+.+||..+++....+.. ....+..+.++.+++++++
T Consensus 82 ~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (346)
T d1jmxb_ 82 SVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVA 161 (346)
T ss_dssp CSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEE
T ss_pred ccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEEe
Confidence 2 2466899999999988765 467889999877665544332 2345667777877776654
Q ss_pred EeCCCcEEEEECCCCceeEEeccCCCceEEEEEcCCC--------------------------CEEEEEECCCeEEEEEC
Q 005096 288 GGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNG--------------------------NWVLTASKDQIIKLYDI 341 (715)
Q Consensus 288 gs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg--------------------------~~Lasgs~dg~I~iwDl 341 (715)
+ ..+.+||+.+++.+..+..+. ....+.+++++ ..++++..+..+.+||+
T Consensus 162 ~---~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (346)
T d1jmxb_ 162 G---PDIYKMDVKTGKYTVALPLRN-WNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDL 237 (346)
T ss_dssp S---SSEEEECTTTCCEEEEECSTT-CCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEET
T ss_pred C---CcceEEEccCCCEEEEEecCC-CccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEEC
Confidence 2 568999999988887765332 22223333332 23334445667888999
Q ss_pred CCCeEEEE-eecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCC
Q 005096 342 RAMKELES-FRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDH 420 (715)
Q Consensus 342 ~t~~~~~~-~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg 420 (715)
.++..... +..+...+..+.+++++.. +++.. ++.|++||..+.+.+..+.. ...+++++|++||++|++++.|+
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~v~v~d~~~~~~~~~~~~--~~~~~~va~s~DG~~l~v~~~d~ 313 (346)
T d1jmxb_ 238 KTGKTHTQEFADLTELYFTGLRSPKDPN-QIYGV-LNRLAKYDLKQRKLIKAANL--DHTYYCVAFDKKGDKLYLGGTFN 313 (346)
T ss_dssp TTCCEEEEEEEECSSCEEEEEECSSCTT-EEEEE-ESEEEEEETTTTEEEEEEEC--SSCCCEEEECSSSSCEEEESBSS
T ss_pred CCCceEEEEeecccceeEEEEEeCCCCE-EEEec-CCeEEEEECCCCcEEEEEcC--CCCEEEEEEcCCCCEEEEEeCCC
Confidence 88776544 5567888999999985544 44444 45799999988876655543 45799999999999999999999
Q ss_pred eEEEEecCCCCCc
Q 005096 421 TTKFWCRNRPGDT 433 (715)
Q Consensus 421 ~I~iWdl~~~~~~ 433 (715)
.|+|||.++.+..
T Consensus 314 ~v~v~D~~t~~~i 326 (346)
T d1jmxb_ 314 DLAVFNPDTLEKV 326 (346)
T ss_dssp EEEEEETTTTEEE
T ss_pred cEEEEECccCCEE
Confidence 9999999754443
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.88 E-value=2.5e-21 Score=210.91 Aligned_cols=275 Identities=11% Similarity=0.026 Sum_probs=200.2
Q ss_pred EEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeee-----cCCCCCeE
Q 005096 158 RLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANK-----SAHKESVR 232 (715)
Q Consensus 158 ~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~-----~~h~~~I~ 232 (715)
++++.+.||+|+|||+.+++.+.++..+. .+..++|+|||++|++++.|++|++||+++++..... ..|...+.
T Consensus 34 ~~V~~~~dg~v~vwD~~t~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~ 112 (426)
T d1hzua2 34 FSVTLRDAGQIALVDGDSKKIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVES 112 (426)
T ss_dssp EEEEETTTTEEEEEETTTCSEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEE
T ss_pred EEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEE
Confidence 45778889999999999999999999874 6999999999999999999999999999988643322 24555667
Q ss_pred EEEEecCCCEEEE-EECCCcEEEEECCCCeeEEEecccCCc-----------eEEEEEcCCCCEEEEEeC-CCcEEEEEC
Q 005096 233 DLSFCRTDLKFCS-CSDDTTVKVWDFARCQEERSLTGHGWD-----------VKSVDWHPTKSLLVSGGK-DSLVKLWDA 299 (715)
Q Consensus 233 ~l~~spd~~~Las-~s~Dg~V~iwdl~~~~~~~~l~~~~~~-----------I~si~~spdg~~L~sgs~-Dg~I~iwDl 299 (715)
+++|++|+++|++ +..++.|++||..++..+..+..+... ...+.+++++..++.... .+.|.+++.
T Consensus 113 s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~ 192 (426)
T d1hzua2 113 SKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNY 192 (426)
T ss_dssp CCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEEC
T ss_pred eeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEe
Confidence 7788899998755 457899999999998888777654433 345555666665554443 345555555
Q ss_pred CCCceeE-EeccCCCceEEEEEcCCCCEEEEEE-CCCeEEEEECCCCeEEEEeecCC--CCeEEEEEccCCCCEEE--EE
Q 005096 300 KSGRELC-SFHGHKNMVLCVKWNQNGNWVLTAS-KDQIIKLYDIRAMKELESFRGHR--KDVTALAWHPFHEEYFV--SG 373 (715)
Q Consensus 300 ~s~~~~~-~~~~~~~~I~sl~~spdg~~Lasgs-~dg~I~iwDl~t~~~~~~~~~h~--~~V~~l~~sp~~~~~l~--sg 373 (715)
.+...+. ....+...+..+.|++++++++++. .+..+.++|..+++.+..+.... .....+.+...+...+. +.
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (426)
T d1hzua2 193 KDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSH 272 (426)
T ss_dssp SSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEEC
T ss_pred ccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEecc
Confidence 5443322 2334667789999999999888776 55679999999999887776432 22333333332333332 33
Q ss_pred eCCCcEEEEEcCCCC------ceEEEeeccCCCEEEEEEcCCCCEEEE-------EECCCeEEEEecCCCCCc
Q 005096 374 SLDGSIFHWLVGHET------PQVEIHNVHDNTVWDLAWHPIGYLLCS-------GSNDHTTKFWCRNRPGDT 433 (715)
Q Consensus 374 s~DG~I~iwd~~~~~------~~~~~~~~h~~~V~~l~~spdg~~L~s-------gs~Dg~I~iWdl~~~~~~ 433 (715)
+.|+.+.+|+..... .....+.+|...+..++|+||+++|++ ++.|++|+|||++.....
T Consensus 273 ~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~ 345 (426)
T d1hzua2 273 LGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAK 345 (426)
T ss_dssp TTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSC
T ss_pred CCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcC
Confidence 457888888875442 345566779999999999999999995 456889999999765543
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.87 E-value=4.4e-20 Score=191.08 Aligned_cols=274 Identities=9% Similarity=0.039 Sum_probs=205.6
Q ss_pred eeehhhheeeEEEEEeccCCCccccccCchhhhcCccceeecCCCCCceeeeEEEEecCCCCccEEEEEEcCCCCEEE-E
Q 005096 83 DYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSFAAKFVHTSLNKNRCSINRVLWTPTGRRLI-T 161 (715)
Q Consensus 83 ~~~~~~~~~~~irvW~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~~l~~spdg~~La-t 161 (715)
+|+.+..++.+|++||....+... ...+..+...+.+++|++||++|+ +
T Consensus 2 ~~~vt~~~d~~v~v~D~~s~~~~~------------------------------~i~~~~~~~~~~~i~~spDg~~l~v~ 51 (337)
T d1pbyb_ 2 DYILAPARPDKLVVIDTEKMAVDK------------------------------VITIADAGPTPMVPMVAPGGRIAYAT 51 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEE------------------------------EEECTTCTTCCCCEEECTTSSEEEEE
T ss_pred eEEEEEcCCCEEEEEECCCCeEEE------------------------------EEECCCCCCCccEEEECCCCCEEEEE
Confidence 577777888999999876433100 112334556678999999999875 5
Q ss_pred EeCCCeEEEEeCCCCceEEEEeccCCC-----EEEEEEcCCCCEEEEEe------------CCCcEEEEeCCCCceeeee
Q 005096 162 GSQSGEFTLWNGQSFNFEMILQAHDHA-----IRSMVWSHNDNWMVSGD------------DGGAIKYWQNNMNNVKANK 224 (715)
Q Consensus 162 gs~dg~I~Iwd~~~~~~~~~l~~h~~~-----V~~l~~spdg~~L~tgs------------~dg~I~iwd~~~~~~~~~~ 224 (715)
++.++.|++||+.+++.+..+..+... +..++|++|+++++++. .+..+.+||..+++....+
T Consensus 52 ~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 131 (337)
T d1pbyb_ 52 VNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAF 131 (337)
T ss_dssp ETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEE
T ss_pred ECCCCeEEEEECCCCcEEEEEecCCCcccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEec
Confidence 678999999999999999988776543 34789999999998775 3578899999999887776
Q ss_pred cCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCC----------------------
Q 005096 225 SAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTK---------------------- 282 (715)
Q Consensus 225 ~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg---------------------- 282 (715)
.. ...+.+++|++|++++++++. .+.+||..+++....+..+... ....+.+++
T Consensus 132 ~~-~~~~~~~~~s~dg~~l~~~~~--~~~~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (337)
T d1pbyb_ 132 EA-PRQITMLAWARDGSKLYGLGR--DLHVMDPEAGTLVEDKPIQSWE-AETYAQPDVLAVWNQHESSGVMATPFYTARK 207 (337)
T ss_dssp EC-CSSCCCEEECTTSSCEEEESS--SEEEEETTTTEEEEEECSTTTT-TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBT
T ss_pred cc-cCCceEEEEcCCCCEEEEEcC--CcceeeeecCcEEEEeecCCcc-ccceecCCcceeeccccccceeeeeeeeeee
Confidence 54 456889999999999998864 4788999998887776533211 111111111
Q ss_pred --CEEEEEeCCCcEEEEECCCCceeEE-eccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEE
Q 005096 283 --SLLVSGGKDSLVKLWDAKSGRELCS-FHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTA 359 (715)
Q Consensus 283 --~~L~sgs~Dg~I~iwDl~s~~~~~~-~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~ 359 (715)
..+.....++.+.+||+.+++.... +..+...+.++.+++++.+++++ ++.|++||+++++.+..+. +...+.+
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~-~~~~~~~ 284 (337)
T d1pbyb_ 208 DIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVP-LPHSYYS 284 (337)
T ss_dssp TSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEE-CSSCCCE
T ss_pred ccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEEEc--cccEEEEECCCCcEEEEEc-CCCCEEE
Confidence 1111122345689999998876543 45567778899999999988766 5899999999999998886 5677899
Q ss_pred EEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEe
Q 005096 360 LAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIH 394 (715)
Q Consensus 360 l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~ 394 (715)
++|++ ++++|++++.|+.|+|||.++.+.+..+.
T Consensus 285 ~~~s~-dG~~l~v~~~~~~i~v~D~~t~~~v~~i~ 318 (337)
T d1pbyb_ 285 VNVST-DGSTVWLGGALGDLAAYDAETLEKKGQVD 318 (337)
T ss_dssp EEECT-TSCEEEEESBSSEEEEEETTTCCEEEEEE
T ss_pred EEECC-CCCEEEEEeCCCcEEEEECCCCcEEEEEE
Confidence 99999 88899999999999999998877665554
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.86 E-value=1.4e-19 Score=197.76 Aligned_cols=263 Identities=11% Similarity=0.030 Sum_probs=191.9
Q ss_pred EEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcee--eee---cCCCCCeE
Q 005096 158 RLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVK--ANK---SAHKESVR 232 (715)
Q Consensus 158 ~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~--~~~---~~h~~~I~ 232 (715)
++++.+.||+|.|||.++++++..+..+. .+..++|++||++|++++.|+.|++||+.+++.. ..+ ..+...+.
T Consensus 34 ~~v~~~d~g~v~v~D~~t~~v~~~~~~g~-~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~ 112 (432)
T d1qksa2 34 FSVTLRDAGQIALIDGSTYEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIET 112 (432)
T ss_dssp EEEEETTTTEEEEEETTTCCEEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEE
T ss_pred EEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEE
Confidence 45788899999999999999999998774 6999999999999999999999999999887532 222 24445566
Q ss_pred EEEEecCCCEE-EEEECCCcEEEEECCCCeeEEEeccc-----------CCceEEEEEcCCCCEEE-EEeCCCcEEEEEC
Q 005096 233 DLSFCRTDLKF-CSCSDDTTVKVWDFARCQEERSLTGH-----------GWDVKSVDWHPTKSLLV-SGGKDSLVKLWDA 299 (715)
Q Consensus 233 ~l~~spd~~~L-as~s~Dg~V~iwdl~~~~~~~~l~~~-----------~~~I~si~~spdg~~L~-sgs~Dg~I~iwDl 299 (715)
+..|++||++| ++++.+++|+|||.++++.+..+..+ ......+.+++++..++ +...++.|.+||.
T Consensus 113 s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~ 192 (432)
T d1qksa2 113 SKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDY 192 (432)
T ss_dssp CCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEET
T ss_pred ecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEc
Confidence 66778899986 67888999999999999888776543 34566789999998664 5566789999999
Q ss_pred CCCceeEEec-cCCCceEEEEEcCCCCEEEEEEC-CCeEEEEECCCCeEEEEeec-----CCCCeEEEEEccCCCCEEEE
Q 005096 300 KSGRELCSFH-GHKNMVLCVKWNQNGNWVLTASK-DQIIKLYDIRAMKELESFRG-----HRKDVTALAWHPFHEEYFVS 372 (715)
Q Consensus 300 ~s~~~~~~~~-~~~~~I~sl~~spdg~~Lasgs~-dg~I~iwDl~t~~~~~~~~~-----h~~~V~~l~~sp~~~~~l~s 372 (715)
.+.+...... .+...+.+++|++|++++++++. ++.|.++|.++.+.+..+.. +........+.. .+...++
T Consensus 193 ~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~g~~~~~ 271 (432)
T d1qksa2 193 TDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPT-FGPVWAT 271 (432)
T ss_dssp TCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETT-TEEEEEE
T ss_pred cCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccceEEEEeccCccccccCcccceecCC-CCceecc
Confidence 8877554332 24567899999999998887774 55899999999888877653 233344444443 3444444
Q ss_pred Ee-CCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEec
Q 005096 373 GS-LDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCR 427 (715)
Q Consensus 373 gs-~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl 427 (715)
.. .++.|.+|+...... ..|...|....+++++..+++++.++.+++|+.
T Consensus 272 ~~lg~~~v~~~~~~~~~~-----~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~ 322 (432)
T d1qksa2 272 SHMGDDSVALIGTDPEGH-----PDNAWKILDSFPALGGGSLFIKTHPNSQYLYVD 322 (432)
T ss_dssp EBSSSSEEEEEECCTTTC-----TTTBTSEEEEEECSCSCCCCEECCTTCSEEEEE
T ss_pred cccCCceEEecccccccc-----cccccEEEEEEEcCCCCeEEEEecCCccceeec
Confidence 33 477888887654321 123445556666666655666666666666654
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.85 E-value=1.7e-18 Score=183.24 Aligned_cols=284 Identities=9% Similarity=-0.034 Sum_probs=205.2
Q ss_pred cCCCCccEEEEEEcCCCCEEEEEe-----CCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEe---------
Q 005096 140 LNKNRCSINRVLWTPTGRRLITGS-----QSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGD--------- 205 (715)
Q Consensus 140 l~~H~~~I~~l~~spdg~~Latgs-----~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs--------- 205 (715)
...+...+.+++++|||+.+++.. .++.|++||.++++.+..+..+... .++|++||++|++++
T Consensus 16 ~~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~ 93 (373)
T d2madh_ 16 AGAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKG 93 (373)
T ss_pred cccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCCc--cEEEcCCCCEEEEEeecCCccccc
Confidence 446888999999999999988652 3467999999999999988766543 799999999998864
Q ss_pred -CCCcEEEEeCCCCceeeeecCCCCCe-------EEEEEecCCCEEEEEE--CCCcEEEEECCCCeeEEEecccCCceEE
Q 005096 206 -DGGAIKYWQNNMNNVKANKSAHKESV-------RDLSFCRTDLKFCSCS--DDTTVKVWDFARCQEERSLTGHGWDVKS 275 (715)
Q Consensus 206 -~dg~I~iwd~~~~~~~~~~~~h~~~I-------~~l~~spd~~~Las~s--~Dg~V~iwdl~~~~~~~~l~~~~~~I~s 275 (715)
.++.|.|||..+++.+..+..+.... ..+.|+++++.+++.. .++.+.+|+....+...... ...+
T Consensus 94 ~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 169 (373)
T d2madh_ 94 KRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLLS----SPTC 169 (373)
T ss_pred ccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEec----ccee
Confidence 45789999999998887776554433 4578888988766554 45688999988766554443 4678
Q ss_pred EEEcCCCCE-EEEEeCCCcEEEEECCCCceeEEeccC------CCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEE
Q 005096 276 VDWHPTKSL-LVSGGKDSLVKLWDAKSGRELCSFHGH------KNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELE 348 (715)
Q Consensus 276 i~~spdg~~-L~sgs~Dg~I~iwDl~s~~~~~~~~~~------~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~ 348 (715)
+.++++++. +++.+.|+.+.+||..+++........ ......+.++.++. ++..+.++.+.+|+..+.....
T Consensus 170 ~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~ 248 (373)
T d2madh_ 170 YHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGR-IVWPVYSGKILQADISAAGATN 248 (373)
T ss_pred EEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCce-EEEecCCceEEEEEcCCCeEEE
Confidence 899999874 467889999999999988766554321 22234556666654 4455678899999988765432
Q ss_pred E--eecCC----------CCeEEEEEccC---------CCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEc
Q 005096 349 S--FRGHR----------KDVTALAWHPF---------HEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWH 407 (715)
Q Consensus 349 ~--~~~h~----------~~V~~l~~sp~---------~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s 407 (715)
. +.... .....++++++ .+..+++...++.|.+||..+.+....+. +...+.+++|+
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~--~~~~~~~~a~s 326 (373)
T d2madh_ 249 KAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS--LGHDVDAISVA 326 (373)
T ss_pred EEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEec--CCCCeeEEEEC
Confidence 2 21111 12233444442 23344556667789999998887766554 45679999999
Q ss_pred CCCC--EEEEEECCCeEEEEecCCCCC
Q 005096 408 PIGY--LLCSGSNDHTTKFWCRNRPGD 432 (715)
Q Consensus 408 pdg~--~L~sgs~Dg~I~iWdl~~~~~ 432 (715)
+||+ ++++++.|+.|+|||+...+.
T Consensus 327 pDG~~~l~vt~~~d~~v~v~D~~tg~~ 353 (373)
T d2madh_ 327 QDGGPDLYALSAGTEVLHIYDAGAGDQ 353 (373)
T ss_pred CCCCEEEEEEeCCCCeEEEEECCCCCE
Confidence 9997 456788999999999976443
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.84 E-value=7e-19 Score=182.28 Aligned_cols=274 Identities=10% Similarity=0.067 Sum_probs=195.4
Q ss_pred EEEEEeCCCeEEEEeCCCCceEEEE--eccCCCEEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCceeeee---cCCCCCe
Q 005096 158 RLITGSQSGEFTLWNGQSFNFEMIL--QAHDHAIRSMVWSHNDNWMVSGD-DGGAIKYWQNNMNNVKANK---SAHKESV 231 (715)
Q Consensus 158 ~Latgs~dg~I~Iwd~~~~~~~~~l--~~h~~~V~~l~~spdg~~L~tgs-~dg~I~iwd~~~~~~~~~~---~~h~~~I 231 (715)
.+++++.|++|+|||+++...+..+ ..|.+.|.+|+|++||++|++++ .|+.|++|++........+ ..+...+
T Consensus 6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p 85 (333)
T d1ri6a_ 6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSL 85 (333)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCC
T ss_pred EEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCc
Confidence 3567778999999998765443333 35788999999999999996554 5899999998765432222 2345567
Q ss_pred EEEEEecCCCEEEEEEC-CCcEEEEECCCCeeEEE--ecccCCceEEEEEcCCCCEEEEEeC-CCcEEEEECCCCceeEE
Q 005096 232 RDLSFCRTDLKFCSCSD-DTTVKVWDFARCQEERS--LTGHGWDVKSVDWHPTKSLLVSGGK-DSLVKLWDAKSGRELCS 307 (715)
Q Consensus 232 ~~l~~spd~~~Las~s~-Dg~V~iwdl~~~~~~~~--l~~~~~~I~si~~spdg~~L~sgs~-Dg~I~iwDl~s~~~~~~ 307 (715)
..++|++|+++|++++. ++.|.+|+......... ...+...+.++.++++++++++++. +..|.+|+.........
T Consensus 86 ~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~ 165 (333)
T d1ri6a_ 86 THISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVA 165 (333)
T ss_dssp SEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEE
T ss_pred eEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCccee
Confidence 88999999999998885 67899998876654433 3446667889999999998887764 45699999876543322
Q ss_pred e------ccCCCceEEEEEcCCCCEEEEEE-CCCeEEEEECCCCe----EEEEee------cCCCCeEEEEEccCCCCEE
Q 005096 308 F------HGHKNMVLCVKWNQNGNWVLTAS-KDQIIKLYDIRAMK----ELESFR------GHRKDVTALAWHPFHEEYF 370 (715)
Q Consensus 308 ~------~~~~~~I~sl~~spdg~~Lasgs-~dg~I~iwDl~t~~----~~~~~~------~h~~~V~~l~~sp~~~~~l 370 (715)
. .........++|++++.+++... ..+.+.+|++.... ....+. ........+++++++..++
T Consensus 166 ~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~ 245 (333)
T d1ri6a_ 166 QDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLY 245 (333)
T ss_dssp EEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEE
T ss_pred eeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCcee
Confidence 1 22345578899999999887665 55677888765322 222221 2234567788999555566
Q ss_pred EEEeCCCcEEEEEcCCCCceEEEe--eccCCCEEEEEEcCCCCEEEEEE-CCCeEEEEecCCCC
Q 005096 371 VSGSLDGSIFHWLVGHETPQVEIH--NVHDNTVWDLAWHPIGYLLCSGS-NDHTTKFWCRNRPG 431 (715)
Q Consensus 371 ~sgs~DG~I~iwd~~~~~~~~~~~--~~h~~~V~~l~~spdg~~L~sgs-~Dg~I~iWdl~~~~ 431 (715)
+++..++.+.+|++........+. ......+.+++|++||++|++++ .++.|++|+++...
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id~~t 309 (333)
T d1ri6a_ 246 ACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQ 309 (333)
T ss_dssp EEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEETTT
T ss_pred eecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEECCC
Confidence 667778899999987765554433 22345678999999999887765 46899999886543
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.81 E-value=6.8e-19 Score=182.69 Aligned_cols=276 Identities=8% Similarity=-0.003 Sum_probs=198.6
Q ss_pred eEeeehhhheeeEEEEEeccCCCccccccCchhhhcCccceeecCCCCCceeeeEEEEecCCCCccEEEEEEcCCCCEEE
Q 005096 81 AVDYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSFAAKFVHTSLNKNRCSINRVLWTPTGRRLI 160 (715)
Q Consensus 81 ~~~~~~~~~~~~~irvW~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~H~~~I~~l~~spdg~~La 160 (715)
..+|+.+..++.+|.+||....+ ++.+....|...+.+++|+|||++|+
T Consensus 7 ~~~~l~~~~~~~~v~v~D~~t~~-------------------------------~~~t~~~~~~~~p~~l~~spDG~~l~ 55 (346)
T d1jmxb_ 7 GHEYMIVTNYPNNLHVVDVASDT-------------------------------VYKSCVMPDKFGPGTAMMAPDNRTAY 55 (346)
T ss_dssp TCEEEEEEETTTEEEEEETTTTE-------------------------------EEEEEECSSCCSSCEEEECTTSSEEE
T ss_pred CCcEEEEEcCCCEEEEEECCCCC-------------------------------EEEEEEcCCCCCcceEEECCCCCEEE
Confidence 34677778888899999886443 11111123556678999999999875
Q ss_pred -EEeCCCeEEEEeCCCCceEEEEeccCC------CEEEEEEcCCCCEEEEEe------------CCCcEEEEeCCCCcee
Q 005096 161 -TGSQSGEFTLWNGQSFNFEMILQAHDH------AIRSMVWSHNDNWMVSGD------------DGGAIKYWQNNMNNVK 221 (715)
Q Consensus 161 -tgs~dg~I~Iwd~~~~~~~~~l~~h~~------~V~~l~~spdg~~L~tgs------------~dg~I~iwd~~~~~~~ 221 (715)
+++.++.|++||+.+++.+..+..... .+..++|++||++|++++ .++.+.+|+..+++..
T Consensus 56 v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 135 (346)
T d1jmxb_ 56 VLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEA 135 (346)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGB
T ss_pred EEECCCCcEEEEeCccCeeeeeecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceee
Confidence 455789999999999998887764332 345789999999997765 4677889988877654
Q ss_pred eeecC--CCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCC----------------
Q 005096 222 ANKSA--HKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKS---------------- 283 (715)
Q Consensus 222 ~~~~~--h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~---------------- 283 (715)
..+.. ....+..+.++.++..+++ +..+.+||+.+.+.+..+..+. ....+.+++++.
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (346)
T d1jmxb_ 136 KPVRTFPMPRQVYLMRAADDGSLYVA---GPDIYKMDVKTGKYTVALPLRN-WNRKGYSAPDVLYFWPHQSPRHEFSMLY 211 (346)
T ss_dssp CCSEEEECCSSCCCEEECTTSCEEEE---SSSEEEECTTTCCEEEEECSTT-CCCTTBCCCBCCCCCCCCCTTCEEEEEE
T ss_pred eEEEeeeccCceEEEEecCCCEEEEe---CCcceEEEccCCCEEEEEecCC-CccceEEeccccEEEEEecCCCceEeee
Confidence 44332 2345666777777765554 3568999999888877765332 223333343332
Q ss_pred ----------EEEEEeCCCcEEEEECCCCceeEE-eccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeec
Q 005096 284 ----------LLVSGGKDSLVKLWDAKSGRELCS-FHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRG 352 (715)
Q Consensus 284 ----------~L~sgs~Dg~I~iwDl~s~~~~~~-~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~ 352 (715)
.++++..+..+.+||+.++..... +..+...+.++.+++++.++++.. ++.|++||+.+++.+..+.
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~v~d~~~~~~~~~~~- 289 (346)
T d1jmxb_ 212 TIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAAN- 289 (346)
T ss_dssp EEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTTEEEEEEE-
T ss_pred eeeeeccCceeEeeccCCceEEEEECCCCceEEEEeecccceeEEEEEeCCCCEEEEec-CCeEEEEECCCCcEEEEEc-
Confidence 223334456688899988775544 455777889999999888887765 4689999999999988886
Q ss_pred CCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEe
Q 005096 353 HRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIH 394 (715)
Q Consensus 353 h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~ 394 (715)
+...+.+++|++ ++++|++++.|+.|+|||.++.+.+..+.
T Consensus 290 ~~~~~~~va~s~-DG~~l~v~~~d~~v~v~D~~t~~~i~~i~ 330 (346)
T d1jmxb_ 290 LDHTYYCVAFDK-KGDKLYLGGTFNDLAVFNPDTLEKVKNIK 330 (346)
T ss_dssp CSSCCCEEEECS-SSSCEEEESBSSEEEEEETTTTEEEEEEE
T ss_pred CCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECccCCEEEEEE
Confidence 456799999999 78888899999999999998877665544
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.78 E-value=6.7e-18 Score=176.82 Aligned_cols=274 Identities=8% Similarity=-0.040 Sum_probs=187.8
Q ss_pred EEEEEcCCCCEEEEEe-----CCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEE----------eCCCcEEE
Q 005096 148 NRVLWTPTGRRLITGS-----QSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSG----------DDGGAIKY 212 (715)
Q Consensus 148 ~~l~~spdg~~Latgs-----~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tg----------s~dg~I~i 212 (715)
.-.+.+||++++++.. .++.|.|||..+++.+.++..+... .++|++|+++|+++ +.|+.|++
T Consensus 5 ~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~~--~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v 82 (355)
T d2bbkh_ 5 ILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEV 82 (355)
T ss_dssp BCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEE
T ss_pred EeEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCCCC--ceEEcCCCCEEEEEeCCCccccccCCCCEEEE
Confidence 3345689999998764 3567999999999999988766544 79999999988764 34789999
Q ss_pred EeCCCCceeeeecCCC-------CCeEEEEEecCCCEEEEEE--CCCcEEEEECCCCeeEEEecccCCc-------eEEE
Q 005096 213 WQNNMNNVKANKSAHK-------ESVRDLSFCRTDLKFCSCS--DDTTVKVWDFARCQEERSLTGHGWD-------VKSV 276 (715)
Q Consensus 213 wd~~~~~~~~~~~~h~-------~~I~~l~~spd~~~Las~s--~Dg~V~iwdl~~~~~~~~l~~~~~~-------I~si 276 (715)
||..+++.+..+..+. .....++|+++++++++++ .+..+.+||..+++.+..+...... ...+
T Consensus 83 ~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (355)
T d2bbkh_ 83 FDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFF 162 (355)
T ss_dssp ECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEE
T ss_pred EECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcceE
Confidence 9999998777654322 2345689999999988775 4578999999999888777644321 2234
Q ss_pred EEcCCCCEEEEEe-CCCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEE--EeecC
Q 005096 277 DWHPTKSLLVSGG-KDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELE--SFRGH 353 (715)
Q Consensus 277 ~~spdg~~L~sgs-~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~--~~~~h 353 (715)
.+++|++.+++.. .++.+.+++...... .+...+.+..++.++..++.++.++.+++||+..++... ....+
T Consensus 163 ~~~~dg~~~~v~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 237 (355)
T d2bbkh_ 163 MHCRDGSLAKVAFGTEGTPEITHTEVFHP-----EDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEAL 237 (355)
T ss_dssp EEETTSCEEEEECCSSSCCEEEECCCCSC-----TTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESS
T ss_pred EEcCCCCEEEEEecCCCeEEEEecccccc-----eecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCc
Confidence 4444444433322 223334444332221 233345566788888899999999999999998765422 12111
Q ss_pred C----------CCeEEEEEccCCCCEEEEEeCC----------CcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCC--
Q 005096 354 R----------KDVTALAWHPFHEEYFVSGSLD----------GSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGY-- 411 (715)
Q Consensus 354 ~----------~~V~~l~~sp~~~~~l~sgs~D----------G~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~-- 411 (715)
. .....+++++ ++..++....+ ..|.+||..+.+....+.. ...+.+++|++||+
T Consensus 238 ~~~~~~~~~~p~~~~~~~~~~-d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~--~~~~~~~a~spDG~~~ 314 (355)
T d2bbkh_ 238 TEAERADGWRPGGWQQVAYHR-ALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM--GHEIDSINVSQDEKPL 314 (355)
T ss_dssp CHHHHHTTEEECSSSCEEEET-TTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE--EEEECEEEECCSSSCE
T ss_pred ccceEeeeeeccceEEEEEeC-CCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecC--CCCEEEEEEcCCCCeE
Confidence 1 2234578888 55555444322 3699999998876655543 44688999999987
Q ss_pred EEEEEECCCeEEEEecCCCC
Q 005096 412 LLCSGSNDHTTKFWCRNRPG 431 (715)
Q Consensus 412 ~L~sgs~Dg~I~iWdl~~~~ 431 (715)
++++++.|+.|+|||+...+
T Consensus 315 l~v~~~~d~~i~v~D~~tg~ 334 (355)
T d2bbkh_ 315 LYALSTGDKTLYIHDAESGE 334 (355)
T ss_dssp EEEEETTTTEEEEEETTTCC
T ss_pred EEEEECCCCEEEEEECCCCC
Confidence 45667789999999997543
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.77 E-value=1.7e-16 Score=163.85 Aligned_cols=245 Identities=9% Similarity=0.141 Sum_probs=172.0
Q ss_pred CCCccEEEEEEcCCCCEEEEEeC-CCeEEEEeCCCCceEEEE---eccCCCEEEEEEcCCCCEEEEEeC-CCcEEEEeCC
Q 005096 142 KNRCSINRVLWTPTGRRLITGSQ-SGEFTLWNGQSFNFEMIL---QAHDHAIRSMVWSHNDNWMVSGDD-GGAIKYWQNN 216 (715)
Q Consensus 142 ~H~~~I~~l~~spdg~~Latgs~-dg~I~Iwd~~~~~~~~~l---~~h~~~V~~l~~spdg~~L~tgs~-dg~I~iwd~~ 216 (715)
.|.+.|.+|+|+|||++|++++. |+.|++|++........+ ..+...+..++|++||++|++++. ++.|.+|+..
T Consensus 34 ~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~ 113 (333)
T d1ri6a_ 34 DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLE 113 (333)
T ss_dssp ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred cCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcCCCCEEeecccCCCceeeeccc
Confidence 46788999999999999976654 899999998765433332 234456778999999999988875 6789999877
Q ss_pred CCceee--eecCCCCCeEEEEEecCCCEEEEEEC-CCcEEEEECCCCeeEEE------ecccCCceEEEEEcCCCCEEEE
Q 005096 217 MNNVKA--NKSAHKESVRDLSFCRTDLKFCSCSD-DTTVKVWDFARCQEERS------LTGHGWDVKSVDWHPTKSLLVS 287 (715)
Q Consensus 217 ~~~~~~--~~~~h~~~I~~l~~spd~~~Las~s~-Dg~V~iwdl~~~~~~~~------l~~~~~~I~si~~spdg~~L~s 287 (715)
...... ....+...+.++.++++++++++++. +..|.+|+......... ..........++|++++.+++.
T Consensus 114 ~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~ 193 (333)
T d1ri6a_ 114 DGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYC 193 (333)
T ss_dssp TTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEE
T ss_pred cccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEe
Confidence 664333 33456677889999999999887775 55799999865433221 1224456689999999988766
Q ss_pred Ee-CCCcEEEEECCCCce----eEEec------cCCCceEEEEEcCCCCEEEEEE-CCCeEEEEECCCCeEEEE---eec
Q 005096 288 GG-KDSLVKLWDAKSGRE----LCSFH------GHKNMVLCVKWNQNGNWVLTAS-KDQIIKLYDIRAMKELES---FRG 352 (715)
Q Consensus 288 gs-~Dg~I~iwDl~s~~~----~~~~~------~~~~~I~sl~~spdg~~Lasgs-~dg~I~iwDl~t~~~~~~---~~~ 352 (715)
.. ..+.+.+|++..... ...+. ........+++++|++++++.. .++.+.+|++........ ...
T Consensus 194 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (333)
T d1ri6a_ 194 VNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQP 273 (333)
T ss_dssp EETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEE
T ss_pred eccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEeC
Confidence 55 456788888654321 11111 1234567789999999777654 567899999876543322 333
Q ss_pred CCCCeEEEEEccCCCCEEEEE-eCCCcEEEEEcCCC
Q 005096 353 HRKDVTALAWHPFHEEYFVSG-SLDGSIFHWLVGHE 387 (715)
Q Consensus 353 h~~~V~~l~~sp~~~~~l~sg-s~DG~I~iwd~~~~ 387 (715)
....+.+++|+| ++++|+++ ..++.|+||+++..
T Consensus 274 ~~~~p~~~a~sp-DGk~l~va~~~~~~v~v~~id~~ 308 (333)
T d1ri6a_ 274 TETQPRGFNVDH-SGKYLIAAGQKSHHISVYEIVGE 308 (333)
T ss_dssp CSSSCCCEEECT-TSSEEEEECTTTCEEEEEEEETT
T ss_pred CCCCeeEEEEeC-CCCEEEEEECCCCeEEEEEEECC
Confidence 456688999999 66655554 56789999977543
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.73 E-value=6.3e-15 Score=155.22 Aligned_cols=253 Identities=8% Similarity=-0.045 Sum_probs=179.8
Q ss_pred EEEEcCCCCEEEEEe----------CCCeEEEEeCCCCceEEEEeccCCCE-------EEEEEcCCCCEEEEEe--CCCc
Q 005096 149 RVLWTPTGRRLITGS----------QSGEFTLWNGQSFNFEMILQAHDHAI-------RSMVWSHNDNWMVSGD--DGGA 209 (715)
Q Consensus 149 ~l~~spdg~~Latgs----------~dg~I~Iwd~~~~~~~~~l~~h~~~V-------~~l~~spdg~~L~tgs--~dg~ 209 (715)
.++|+|||++|++++ .++.|.|||..+++.+..+..+.... ..+.|+++++.+++.. .++.
T Consensus 70 ~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~ 149 (373)
T d2madh_ 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPA 149 (373)
T ss_pred cEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCc
Confidence 689999999999875 35789999999999998887766544 4578888888765543 4567
Q ss_pred EEEEeCCCCceeeeecCCCCCeEEEEEecCCCE-EEEEECCCcEEEEECCCCeeEEEeccc------CCceEEEEEcCCC
Q 005096 210 IKYWQNNMNNVKANKSAHKESVRDLSFCRTDLK-FCSCSDDTTVKVWDFARCQEERSLTGH------GWDVKSVDWHPTK 282 (715)
Q Consensus 210 I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~-Las~s~Dg~V~iwdl~~~~~~~~l~~~------~~~I~si~~spdg 282 (715)
+.+|+....+..... ....++.++++++. +++.+.|+++.+||....+.......+ ......+.++.++
T Consensus 150 ~~~~~~~~~~~~~~~----~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (373)
T d2madh_ 150 VGLVVQGGSSDDQLL----SSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSG 225 (373)
T ss_pred eEEeeccCCeEEEEe----ccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCc
Confidence 889988877654433 34667889998865 467888999999999887776655422 1223455666555
Q ss_pred CEEEEEeCCCcEEEEECCCCceeEE--eccC----------CCceEEEEEcCCCCEEE----------EEECCCeEEEEE
Q 005096 283 SLLVSGGKDSLVKLWDAKSGRELCS--FHGH----------KNMVLCVKWNQNGNWVL----------TASKDQIIKLYD 340 (715)
Q Consensus 283 ~~L~sgs~Dg~I~iwDl~s~~~~~~--~~~~----------~~~I~sl~~spdg~~La----------sgs~dg~I~iwD 340 (715)
. ++..+.++.+++|+..+...... +... ......+++++++.+++ +...++.|.+||
T Consensus 226 ~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d 304 (373)
T d2madh_ 226 R-IVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVT 304 (373)
T ss_pred e-EEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEE
Confidence 4 45566788999999887653322 1111 12233455666655444 455667899999
Q ss_pred CCCCeEEEEeecCCCCeEEEEEccCCCC-EEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcC
Q 005096 341 IRAMKELESFRGHRKDVTALAWHPFHEE-YFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHP 408 (715)
Q Consensus 341 l~t~~~~~~~~~h~~~V~~l~~sp~~~~-~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~sp 408 (715)
+.+++.+..+. +...+.+++|++++.. ++++++.|+.|+|||+.+++.+..+. .+....+.|++..
T Consensus 305 ~~t~~~~~~~~-~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~-~~g~~P~~l~~~~ 371 (373)
T d2madh_ 305 GLVGQTSSQIS-LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTV-ELGSGPQVLSVMN 371 (373)
T ss_pred CCCCcEEEEec-CCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEC-CCCCCCcEEEEec
Confidence 99999988776 6677899999994444 45788999999999999987665544 3555666666654
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.71 E-value=1.6e-15 Score=158.37 Aligned_cols=241 Identities=7% Similarity=0.016 Sum_probs=166.1
Q ss_pred EEEEEcCCCCEEEEEe----------CCCeEEEEeCCCCceEEEEeccCC-------CEEEEEEcCCCCEEEEEe--CCC
Q 005096 148 NRVLWTPTGRRLITGS----------QSGEFTLWNGQSFNFEMILQAHDH-------AIRSMVWSHNDNWMVSGD--DGG 208 (715)
Q Consensus 148 ~~l~~spdg~~Latgs----------~dg~I~Iwd~~~~~~~~~l~~h~~-------~V~~l~~spdg~~L~tgs--~dg 208 (715)
..++|||||++|++++ .|+.|+|||..+++.+..+..+.. ....++|+++++++++++ .+.
T Consensus 50 ~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~ 129 (355)
T d2bbkh_ 50 PNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAP 129 (355)
T ss_dssp CEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSC
T ss_pred CceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCc
Confidence 3689999999888653 478999999999999888765432 234679999999887764 457
Q ss_pred cEEEEeCCCCceeeeecCCCCC-------eEEEEEecCCCEEEEEE-CCCcEEEEECCCCeeEEEecccCCceEEEEEcC
Q 005096 209 AIKYWQNNMNNVKANKSAHKES-------VRDLSFCRTDLKFCSCS-DDTTVKVWDFARCQEERSLTGHGWDVKSVDWHP 280 (715)
Q Consensus 209 ~I~iwd~~~~~~~~~~~~h~~~-------I~~l~~spd~~~Las~s-~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~sp 280 (715)
.+.+|+..+++....+...... ...+.+++|++.++... .++.+.+++..... ..+...+....+..
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~ 204 (355)
T d2bbkh_ 130 AVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFH-----PEDEFLINHPAYSQ 204 (355)
T ss_dssp EEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCS-----CTTSCBCSCCEEET
T ss_pred eeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEeccccc-----ceecceeeeccccC
Confidence 8999999999887766543321 22234444444433322 22233333332221 12333456677888
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceeEE--eccC----------CCceEEEEEcCCCCEEEEEECC----------CeEEE
Q 005096 281 TKSLLVSGGKDSLVKLWDAKSGRELCS--FHGH----------KNMVLCVKWNQNGNWVLTASKD----------QIIKL 338 (715)
Q Consensus 281 dg~~L~sgs~Dg~I~iwDl~s~~~~~~--~~~~----------~~~I~sl~~spdg~~Lasgs~d----------g~I~i 338 (715)
++..++.++.++.+++|++..++.... ...+ ......++++++++++++...+ ..|.+
T Consensus 205 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v 284 (355)
T d2bbkh_ 205 KAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVV 284 (355)
T ss_dssp TTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEE
T ss_pred CCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEE
Confidence 888999999999999999987754321 1111 1123458899999988876543 36999
Q ss_pred EECCCCeEEEEeecCCCCeEEEEEccCCCC-EEEEEeCCCcEEEEEcCCCCceEEEe
Q 005096 339 YDIRAMKELESFRGHRKDVTALAWHPFHEE-YFVSGSLDGSIFHWLVGHETPQVEIH 394 (715)
Q Consensus 339 wDl~t~~~~~~~~~h~~~V~~l~~sp~~~~-~l~sgs~DG~I~iwd~~~~~~~~~~~ 394 (715)
||+.+++.+..+.. ...+.+++|++++.. ++++++.|+.|+|||..+.+.+..+.
T Consensus 285 ~d~~t~~~~~~~~~-~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~ 340 (355)
T d2bbkh_ 285 LDAKTGERLAKFEM-GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVN 340 (355)
T ss_dssp EETTTCCEEEEEEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEEC
T ss_pred EeCCCCcEEEEecC-CCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEEEe
Confidence 99999999888763 456889999995444 45677789999999999887665553
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.61 E-value=1.3e-14 Score=153.46 Aligned_cols=280 Identities=8% Similarity=-0.086 Sum_probs=185.5
Q ss_pred CCccEEEEEEcCCCCEEEEE---eCCC--eEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEe----------CC
Q 005096 143 NRCSINRVLWTPTGRRLITG---SQSG--EFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGD----------DG 207 (715)
Q Consensus 143 H~~~I~~l~~spdg~~Latg---s~dg--~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs----------~d 207 (715)
+.+....++..++++..... ..++ .|++||..+++.+..+..+... .++|++|+++|++.+ .|
T Consensus 18 ~~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d 95 (368)
T d1mdah_ 18 SDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRT 95 (368)
T ss_dssp CCCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEE
T ss_pred cCCCccccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeCCCCC--cceECCCCCEEEEEcccCccccccccC
Confidence 34444555667788764322 3334 4777799999999888877655 589999999888754 36
Q ss_pred CcEEEEeCCCCceeeeecCCC-------CCeEEEEEecCCCEEEEEE-CCCcEEEEECCCCeeEEEecccCCceEEEEEc
Q 005096 208 GAIKYWQNNMNNVKANKSAHK-------ESVRDLSFCRTDLKFCSCS-DDTTVKVWDFARCQEERSLTGHGWDVKSVDWH 279 (715)
Q Consensus 208 g~I~iwd~~~~~~~~~~~~h~-------~~I~~l~~spd~~~Las~s-~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~s 279 (715)
+.|.+||..+++.+..+..+. .....++|++|+++|+++. .++.|.+||+.+.+.+..+..+...... .
T Consensus 96 ~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~---~ 172 (368)
T d1mdah_ 96 DYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIH---P 172 (368)
T ss_dssp EEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCE---E
T ss_pred CeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceEc---c
Confidence 789999999998877664332 2234689999999998876 5799999999999988887655433211 1
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCceeEEe------ccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEee--
Q 005096 280 PTKSLLVSGGKDSLVKLWDAKSGRELCSF------HGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFR-- 351 (715)
Q Consensus 280 pdg~~L~sgs~Dg~I~iwDl~s~~~~~~~------~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~-- 351 (715)
.....++..+.||.+.+|++......... ..+...+..+.+..++..+++. ++.++++|+..........
T Consensus 173 ~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~v~~~~~~~~~~~~~~~~~ 250 (368)
T d1mdah_ 173 GAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAV--ASSILQGDIPAAGATMKAAID 250 (368)
T ss_dssp EETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECB--SSCCEEEECCSSCCEEECCCC
T ss_pred CCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEec--CCCEEEEeecCCceEEEeecc
Confidence 12346666777888888887654433222 2233445567777777655443 5667777776554432221
Q ss_pred cCC----------CCeEEEEEccCCCCEEEEEeCC--------CcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCC--
Q 005096 352 GHR----------KDVTALAWHPFHEEYFVSGSLD--------GSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGY-- 411 (715)
Q Consensus 352 ~h~----------~~V~~l~~sp~~~~~l~sgs~D--------G~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~-- 411 (715)
... .....++++++++.++++...+ ..|.+||..+.+....+. +...+.+++|++||+
T Consensus 251 ~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~--~~~~~~~~a~spDG~~~ 328 (368)
T d1mdah_ 251 GNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPIS--NGHDSDAIIAAQDGASD 328 (368)
T ss_dssp SSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCE--EEEEECEEEECCSSSCE
T ss_pred cccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEec--CCCceeEEEECCCCCEE
Confidence 111 1234577888444444443322 258899998887554443 345788999999986
Q ss_pred EEEEEECCCeEEEEecCCCC
Q 005096 412 LLCSGSNDHTTKFWCRNRPG 431 (715)
Q Consensus 412 ~L~sgs~Dg~I~iWdl~~~~ 431 (715)
+++++..|+.|+|||....+
T Consensus 329 ly~s~~~~~~v~v~D~~tgk 348 (368)
T d1mdah_ 329 NYANSAGTEVLDIYDAASDQ 348 (368)
T ss_dssp EEEEETTTTEEEEEESSSCE
T ss_pred EEEEeCCCCeEEEEECCCCC
Confidence 34566778999999986644
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.59 E-value=3.1e-14 Score=155.77 Aligned_cols=287 Identities=9% Similarity=0.052 Sum_probs=174.1
Q ss_pred ecCCCCccEEEEEEcCCCCEEEEEeC---------CCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCc
Q 005096 139 SLNKNRCSINRVLWTPTGRRLITGSQ---------SGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGA 209 (715)
Q Consensus 139 ~l~~H~~~I~~l~~spdg~~Latgs~---------dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~ 209 (715)
.+..|...|.++.|||||++|++++. ++.+.|||+++++ ...+..+...+..+.|||||++||.. .++.
T Consensus 56 ~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~-~~~l~~~~~~~~~~~~SPDG~~ia~~-~~~~ 133 (470)
T d2bgra1 56 TFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQ-LITEERIPNNTQWVTWSPVGHKLAYV-WNND 133 (470)
T ss_dssp TTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTE-ECCSSCCCTTEEEEEECSSTTCEEEE-ETTE
T ss_pred hhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCc-ccccccCCccccccccccCcceeeEe-eccc
Confidence 45678888999999999999998753 5678999999876 45577888999999999999999986 4678
Q ss_pred EEEEeCCCCceeeeecCC------------------CCCeEEEEEecCCCEEEEEECCCc-EEEEEC-------------
Q 005096 210 IKYWQNNMNNVKANKSAH------------------KESVRDLSFCRTDLKFCSCSDDTT-VKVWDF------------- 257 (715)
Q Consensus 210 I~iwd~~~~~~~~~~~~h------------------~~~I~~l~~spd~~~Las~s~Dg~-V~iwdl------------- 257 (715)
+++|+..++......... ......+.|+||+++|+....|.+ |..|++
T Consensus 134 l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~~~v~~~~~~~~~~~~~~~~~~ 213 (470)
T d2bgra1 134 IYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKT 213 (470)
T ss_dssp EEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEE
T ss_pred ceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeEecCCcCceEEEEeeccCCCCCCee
Confidence 999999888665543221 233466889999999998765433 433332
Q ss_pred ----------------------CCCeeEEEe-----------cccCCceEEEEEcCCCCEEEEEe-CCC---cEEE--EE
Q 005096 258 ----------------------ARCQEERSL-----------TGHGWDVKSVDWHPTKSLLVSGG-KDS---LVKL--WD 298 (715)
Q Consensus 258 ----------------------~~~~~~~~l-----------~~~~~~I~si~~spdg~~L~sgs-~Dg---~I~i--wD 298 (715)
......... ......+..+.|..++++++... ..+ .+.+ +|
T Consensus 214 ~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~r~~~~~~~~~~~~d 293 (470)
T d2bgra1 214 VRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYD 293 (470)
T ss_dssp EEEECCBTTSCCCEEEEEEEEGGGCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEE
T ss_pred eeeccccccccCCcceEEEEECCCcceeeeccccccCCccccCCCCceEEEEEEcCCCceeEEEeeccCCceEEEEEEec
Confidence 111100000 01122356788888777555432 222 2333 45
Q ss_pred CCCCceeEEec------cCCCce-----EEEEEcCCC--CEEEEEECCCeEEEE--ECCCCeEEEEeecCCCCeEEEEEc
Q 005096 299 AKSGRELCSFH------GHKNMV-----LCVKWNQNG--NWVLTASKDQIIKLY--DIRAMKELESFRGHRKDVTALAWH 363 (715)
Q Consensus 299 l~s~~~~~~~~------~~~~~I-----~sl~~spdg--~~Lasgs~dg~I~iw--Dl~t~~~~~~~~~h~~~V~~l~~s 363 (715)
..+++...... .....+ ....|..++ .+++....||..+|| +.. +.....+......|..+. +
T Consensus 294 ~~tg~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~~dg~~~ly~~~~~-g~~~~~lt~g~~~v~~~~-~ 371 (470)
T d2bgra1 294 ESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQID-KKDCTFITKGTWEVIGIE-A 371 (470)
T ss_dssp TTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETT-CSCCEESCCSSSCEEEEE-E
T ss_pred CCCCcEEEEEEEeeeeeeccceeecccCCCceeeecCCCcEEEEeccCcCceeEEEecc-CCceeeeccCCeeEEEEE-E
Confidence 55554332211 011111 122344433 345566677765555 544 444555555566677763 3
Q ss_pred cCCCCEEEEEeCCC----cEEEEE--cCCCCceEEE---eeccCCCEEEEEEcCCCCEEEEEE---CCCeEEEEecCC
Q 005096 364 PFHEEYFVSGSLDG----SIFHWL--VGHETPQVEI---HNVHDNTVWDLAWHPIGYLLCSGS---NDHTTKFWCRNR 429 (715)
Q Consensus 364 p~~~~~l~sgs~DG----~I~iwd--~~~~~~~~~~---~~~h~~~V~~l~~spdg~~L~sgs---~Dg~I~iWdl~~ 429 (715)
.+++.++++++.++ .-.||. +........+ ...|...+..++|||||++++..+ .+-.+.+|+...
T Consensus 372 ~d~~~iyf~a~~~~~~p~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~s~~fSpdgky~~~~~s~~~~P~~~l~~~~~ 449 (470)
T d2bgra1 372 LTSDYLYYISNEYKGMPGGRNLYKIQLSDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVN 449 (470)
T ss_dssp ECSSEEEEEESCGGGCTTCBEEEEEETTCTTCEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETTT
T ss_pred ECCCEEEEEEecCCCCcceEEEEEEECCCCCceeEecccccCCCCCEEEEEECCCCCEEEEEecCCCCCeEEEEECCC
Confidence 33455555555433 224554 4433333222 234677899999999999877333 344588888754
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.56 E-value=1.9e-13 Score=149.39 Aligned_cols=279 Identities=10% Similarity=0.043 Sum_probs=173.9
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEecc-----CCCEEEEEEcCCCCEEEEEeC---------CCcEEEEe
Q 005096 149 RVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAH-----DHAIRSMVWSHNDNWMVSGDD---------GGAIKYWQ 214 (715)
Q Consensus 149 ~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h-----~~~V~~l~~spdg~~L~tgs~---------dg~I~iwd 214 (715)
.+.|.+|+.++. ..|+.|.+||..+++....+..+ ...|.++.||||+++|+.++. ++.+.|||
T Consensus 21 ~~~W~~d~~~~~--~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d 98 (470)
T d2bgra1 21 SLRWISDHEYLY--KQENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYD 98 (470)
T ss_dssp CCEECSSSEEEE--ESSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred CCEeCCCCEEEE--EcCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEE
Confidence 467899997765 35788999999999887766544 467999999999999988753 46789999
Q ss_pred CCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEeccc------------------CCceEEE
Q 005096 215 NNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGH------------------GWDVKSV 276 (715)
Q Consensus 215 ~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~------------------~~~I~si 276 (715)
+++++.. .+..+...+..+.|+|||++||... ++.+++|++.+++........ .+....+
T Consensus 99 ~~~~~~~-~l~~~~~~~~~~~~SPDG~~ia~~~-~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~ 176 (470)
T d2bgra1 99 LNKRQLI-TEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSAL 176 (470)
T ss_dssp TTTTEEC-CSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCE
T ss_pred CCCCccc-ccccCCccccccccccCcceeeEee-cccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCcccc
Confidence 9988754 5677888999999999999999865 668999999887765543221 2234668
Q ss_pred EEcCCCCEEEEEeCCCc-EEEE-----------------------------------ECCCCceeEEe-----------c
Q 005096 277 DWHPTKSLLVSGGKDSL-VKLW-----------------------------------DAKSGRELCSF-----------H 309 (715)
Q Consensus 277 ~~spdg~~L~sgs~Dg~-I~iw-----------------------------------Dl~s~~~~~~~-----------~ 309 (715)
.|+|||+.|++...|.. +..| |+.+++..... .
T Consensus 177 ~wSPDGk~ia~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 256 (470)
T d2bgra1 177 WWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASML 256 (470)
T ss_dssp EECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEEGGGCCSSSCCCEEEECCCHHHH
T ss_pred EECCCCCccceeEecCCcCceEEEEeeccCCCCCCeeeeeccccccccCCcceEEEEECCCcceeeeccccccCCccccC
Confidence 89999999998765432 3332 22221111000 0
Q ss_pred cCCCceEEEEEcCCCCEEEEEE-CCC-----eEEEEECCCCeEEEEee------cCCCC-----eEEEEEccCCCC-EEE
Q 005096 310 GHKNMVLCVKWNQNGNWVLTAS-KDQ-----IIKLYDIRAMKELESFR------GHRKD-----VTALAWHPFHEE-YFV 371 (715)
Q Consensus 310 ~~~~~I~sl~~spdg~~Lasgs-~dg-----~I~iwDl~t~~~~~~~~------~h~~~-----V~~l~~sp~~~~-~l~ 371 (715)
.....+..+.|..++++++... ..+ .+..+|..++....... ..... -....+..+++. +++
T Consensus 257 ~~~~~~~~~~w~~~~~~~~~~~~r~~~~~~~~~~~~d~~tg~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 336 (470)
T d2bgra1 257 IGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKI 336 (470)
T ss_dssp TSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEE
T ss_pred CCCceEEEEEEcCCCceeEEEeeccCCceEEEEEEecCCCCcEEEEEEEeeeeeeccceeecccCCCceeeecCCCcEEE
Confidence 1122356788888877655432 222 23444556665433221 01111 112234443333 456
Q ss_pred EEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCE-EEEEECCC----eEEEEecCCCCC
Q 005096 372 SGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYL-LCSGSNDH----TTKFWCRNRPGD 432 (715)
Q Consensus 372 sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~-L~sgs~Dg----~I~iWdl~~~~~ 432 (715)
....||...||.++........+..+...|..+. +.+++. +++++.++ .-.||.++..+.
T Consensus 337 ~s~~dg~~~ly~~~~~g~~~~~lt~g~~~v~~~~-~~d~~~iyf~a~~~~~~p~~~~ly~v~~~g~ 401 (470)
T d2bgra1 337 ISNEEGYRHICYFQIDKKDCTFITKGTWEVIGIE-ALTSDYLYYISNEYKGMPGGRNLYKIQLSDY 401 (470)
T ss_dssp EECTTSCEEEEEEETTCSCCEESCCSSSCEEEEE-EECSSEEEEEESCGGGCTTCBEEEEEETTCT
T ss_pred EeccCcCceeEEEeccCCceeeeccCCeeEEEEE-EECCCEEEEEEecCCCCcceEEEEEEECCCC
Confidence 6778887777765444444455544566677763 334433 34444332 335777765443
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.54 E-value=1.1e-13 Score=146.27 Aligned_cols=240 Identities=7% Similarity=-0.045 Sum_probs=166.9
Q ss_pred EEEEcCCCCEEEEEe----------CCCeEEEEeCCCCceEEEEeccCCC-------EEEEEEcCCCCEEEEEe-CCCcE
Q 005096 149 RVLWTPTGRRLITGS----------QSGEFTLWNGQSFNFEMILQAHDHA-------IRSMVWSHNDNWMVSGD-DGGAI 210 (715)
Q Consensus 149 ~l~~spdg~~Latgs----------~dg~I~Iwd~~~~~~~~~l~~h~~~-------V~~l~~spdg~~L~tgs-~dg~I 210 (715)
.++|++||++|++.+ .|+.|.+||..+++.+..+..+... ...++|++||++|+++. .++.|
T Consensus 69 ~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v 148 (368)
T d1mdah_ 69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAA 148 (368)
T ss_dssp EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCE
T ss_pred cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeE
Confidence 488999999998765 3678999999999998888654322 23689999999998775 57999
Q ss_pred EEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEe------cccCCceEEEEEcCCCCE
Q 005096 211 KYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSL------TGHGWDVKSVDWHPTKSL 284 (715)
Q Consensus 211 ~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l------~~~~~~I~si~~spdg~~ 284 (715)
.+||+.+++....+..+..... +......++..+.||++.+|++......... ..+...+..+.+.+++..
T Consensus 149 ~~~d~~~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 225 (368)
T d1mdah_ 149 AGLSVPGASDDQLTKSASCFHI---HPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGML 225 (368)
T ss_dssp EEEEETTTEEEEEEECSSCCCC---EEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEE
T ss_pred EEEECCCCcEeEEeeccCcceE---ccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEE
Confidence 9999999988877755443321 1123456677778888888887655443222 223344556777777765
Q ss_pred EEEEeCCCcEEEEECCCCceeEEec--cC----------CCceEEEEEcCCCCEEEEEECC---------CeEEEEECCC
Q 005096 285 LVSGGKDSLVKLWDAKSGRELCSFH--GH----------KNMVLCVKWNQNGNWVLTASKD---------QIIKLYDIRA 343 (715)
Q Consensus 285 L~sgs~Dg~I~iwDl~s~~~~~~~~--~~----------~~~I~sl~~spdg~~Lasgs~d---------g~I~iwDl~t 343 (715)
+.+. ++.++++|+..++...... .. ......++++++++.+++...+ ..|++||..+
T Consensus 226 ~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t 303 (368)
T d1mdah_ 226 VWAV--ASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASV 303 (368)
T ss_dssp EECB--SSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSS
T ss_pred EEec--CCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCC
Confidence 5443 4667777776554433221 10 1112357888988887765432 2599999999
Q ss_pred CeEEEEeecCCCCeEEEEEccCCCC-EEEEEeCCCcEEEEEcCCCCceEEEe
Q 005096 344 MKELESFRGHRKDVTALAWHPFHEE-YFVSGSLDGSIFHWLVGHETPQVEIH 394 (715)
Q Consensus 344 ~~~~~~~~~h~~~V~~l~~sp~~~~-~l~sgs~DG~I~iwd~~~~~~~~~~~ 394 (715)
++.+..+.. ...+.+++|++++.. +++++..|+.|+|||..+++.+..+.
T Consensus 304 ~~~~~~~~~-~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~ 354 (368)
T d1mdah_ 304 GQTSGPISN-GHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVE 354 (368)
T ss_dssp CCEEECCEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECC
T ss_pred CcEeEEecC-CCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEE
Confidence 998887763 457889999995544 45677788999999998887655544
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.50 E-value=5.7e-13 Score=142.95 Aligned_cols=257 Identities=9% Similarity=0.048 Sum_probs=177.6
Q ss_pred EEEEeCCCeEEEEeCCCCceEEEEec------------------------------cCCCEEEEEEcCCCCEEEEE-eCC
Q 005096 159 LITGSQSGEFTLWNGQSFNFEMILQA------------------------------HDHAIRSMVWSHNDNWMVSG-DDG 207 (715)
Q Consensus 159 Latgs~dg~I~Iwd~~~~~~~~~l~~------------------------------h~~~V~~l~~spdg~~L~tg-s~d 207 (715)
+++++.+|.|+||++.+++.++++.. |.-.+....+++||++|++. ..+
T Consensus 14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~ 93 (441)
T d1qnia2 14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKAN 93 (441)
T ss_dssp EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETTT
T ss_pred EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCCC
Confidence 45777899999999999988887632 12234445557899999665 467
Q ss_pred CcEEEEeCCCCceeeeec-CCCCCeEEEEEecCCCE--EEEEECCC-----------------cEEEEECCCCeeEEEec
Q 005096 208 GAIKYWQNNMNNVKANKS-AHKESVRDLSFCRTDLK--FCSCSDDT-----------------TVKVWDFARCQEERSLT 267 (715)
Q Consensus 208 g~I~iwd~~~~~~~~~~~-~h~~~I~~l~~spd~~~--Las~s~Dg-----------------~V~iwdl~~~~~~~~l~ 267 (715)
++|.+||+++.+....+. .+...+..++|+++++. ++..+.+. .+..+|..+.+....+.
T Consensus 94 ~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~ 173 (441)
T d1qnia2 94 TRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVI 173 (441)
T ss_dssp TEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEEE
T ss_pred CEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEEEe
Confidence 899999999998877664 35678999999999884 44444332 23557888777776665
Q ss_pred ccCCceEEEEEcCCCCEEEEEeCC-----------------------------------------CcEEEEECCCCceeE
Q 005096 268 GHGWDVKSVDWHPTKSLLVSGGKD-----------------------------------------SLVKLWDAKSGRELC 306 (715)
Q Consensus 268 ~~~~~I~si~~spdg~~L~sgs~D-----------------------------------------g~I~iwDl~s~~~~~ 306 (715)
. ......++|++||+++++++.+ +.+.|++....+.+.
T Consensus 174 v-~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~v~~ 252 (441)
T d1qnia2 174 V-DGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESEFTR 252 (441)
T ss_dssp E-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSCSSEE
T ss_pred c-CCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccCCceEE
Confidence 3 3457889999999998887754 233444444444555
Q ss_pred EeccCCCceEEEEEcCCCCEEEE-EECCCeEEEEECCCCeEE-----------EEeecCCCCeEEEEEccCCCCEEEEEe
Q 005096 307 SFHGHKNMVLCVKWNQNGNWVLT-ASKDQIIKLYDIRAMKEL-----------ESFRGHRKDVTALAWHPFHEEYFVSGS 374 (715)
Q Consensus 307 ~~~~~~~~I~sl~~spdg~~Las-gs~dg~I~iwDl~t~~~~-----------~~~~~h~~~V~~l~~sp~~~~~l~sgs 374 (715)
.+...+ ....+.++|||+++++ +..+++|.|||+++.+.. .-.....-.....+|++ +++.+.+..
T Consensus 253 ~IPvgk-sPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~-~g~~yts~~ 330 (441)
T d1qnia2 253 YIPVPK-NPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDG-RGNAYTTLF 330 (441)
T ss_dssp EECCBS-SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECS-SSEEEEEET
T ss_pred EEeCCC-CccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCcccceecC-CceEEEccc
Confidence 554333 3577999999998765 567899999998753321 11111122345567887 677888888
Q ss_pred CCCcEEEEEcCC---------CCceEEEe-----eccCCCEEEEEEcCCCCEEEEEEC
Q 005096 375 LDGSIFHWLVGH---------ETPQVEIH-----NVHDNTVWDLAWHPIGYLLCSGSN 418 (715)
Q Consensus 375 ~DG~I~iwd~~~---------~~~~~~~~-----~~h~~~V~~l~~spdg~~L~sgs~ 418 (715)
.|..|..|++.. ...++..+ .+|...+.+.+++|||++|++++.
T Consensus 331 ~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~~k 388 (441)
T d1qnia2 331 IDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVLSK 388 (441)
T ss_dssp TTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEEES
T ss_pred ccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCCcEEEecCc
Confidence 999999999741 22233332 356666677788999999999954
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.33 E-value=1.5e-11 Score=131.70 Aligned_cols=226 Identities=8% Similarity=-0.014 Sum_probs=155.6
Q ss_pred EEEEeCCCcEEEEeCCCCceeeeecC------------------------------CCCCeEEEEEecCCCEEEEEE-CC
Q 005096 201 MVSGDDGGAIKYWQNNMNNVKANKSA------------------------------HKESVRDLSFCRTDLKFCSCS-DD 249 (715)
Q Consensus 201 L~tgs~dg~I~iwd~~~~~~~~~~~~------------------------------h~~~I~~l~~spd~~~Las~s-~D 249 (715)
+++++.+|.|+||++.+.+.+.++.. |.-.+.....++||++|++.. .+
T Consensus 14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~ 93 (441)
T d1qnia2 14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKAN 93 (441)
T ss_dssp EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETTT
T ss_pred EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCCC
Confidence 45677899999999988876665421 122344455578999987665 57
Q ss_pred CcEEEEECCCCeeEEEecc-cCCceEEEEEcCCCC--EEEEEeCCC-----------------cEEEEECCCCceeEEec
Q 005096 250 TTVKVWDFARCQEERSLTG-HGWDVKSVDWHPTKS--LLVSGGKDS-----------------LVKLWDAKSGRELCSFH 309 (715)
Q Consensus 250 g~V~iwdl~~~~~~~~l~~-~~~~I~si~~spdg~--~L~sgs~Dg-----------------~I~iwDl~s~~~~~~~~ 309 (715)
++|.++|+++.+....+.. +...+..++|+++++ +++..+.+. .+..+|..+.+....+.
T Consensus 94 ~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~ 173 (441)
T d1qnia2 94 TRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVI 173 (441)
T ss_dssp TEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEEE
T ss_pred CEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEEEe
Confidence 8999999999988777653 567899999999998 444444432 23557888877776665
Q ss_pred cCCCceEEEEEcCCCCEEEEEECCC-----------------------------------------eEEEEECCCCeEEE
Q 005096 310 GHKNMVLCVKWNQNGNWVLTASKDQ-----------------------------------------IIKLYDIRAMKELE 348 (715)
Q Consensus 310 ~~~~~I~sl~~spdg~~Lasgs~dg-----------------------------------------~I~iwDl~t~~~~~ 348 (715)
. ......+.|++||+++++.+.+. .+.|++..+.+.+.
T Consensus 174 v-~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~v~~ 252 (441)
T d1qnia2 174 V-DGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESEFTR 252 (441)
T ss_dssp E-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSCSSEE
T ss_pred c-CCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccCCceEE
Confidence 3 34578899999999999887542 33344444444444
Q ss_pred EeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCc----------eEEEeeccCCCEEEEEEcCCCCEEEEEEC
Q 005096 349 SFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETP----------QVEIHNVHDNTVWDLAWHPIGYLLCSGSN 418 (715)
Q Consensus 349 ~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~----------~~~~~~~h~~~V~~l~~spdg~~L~sgs~ 418 (715)
.+... .....+.++|++..+++++..+++|.|||+++-.. .+.......-.....+|+++|..+.+...
T Consensus 253 ~IPvg-ksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~~yts~~~ 331 (441)
T d1qnia2 253 YIPVP-KNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFI 331 (441)
T ss_dssp EECCB-SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETT
T ss_pred EEeCC-CCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCcccceecCCceEEEcccc
Confidence 55443 33577999995555567778899999999864221 11111111223455789999998999999
Q ss_pred CCeEEEEecC
Q 005096 419 DHTTKFWCRN 428 (715)
Q Consensus 419 Dg~I~iWdl~ 428 (715)
|..|..|+++
T Consensus 332 ds~v~kw~~~ 341 (441)
T d1qnia2 332 DSQVCKWNIA 341 (441)
T ss_dssp TTEEEEEEHH
T ss_pred cceEEEeccc
Confidence 9999999984
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.29 E-value=3.2e-10 Score=113.55 Aligned_cols=239 Identities=9% Similarity=-0.024 Sum_probs=158.9
Q ss_pred CccEEEEEEcCCCCEEEEEe-CCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceee
Q 005096 144 RCSINRVLWTPTGRRLITGS-QSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKA 222 (715)
Q Consensus 144 ~~~I~~l~~spdg~~Latgs-~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~ 222 (715)
...=.+|+++++|+++++.. .++.|..++..+.........-......|+++++++++++...++.|++++..+.....
T Consensus 13 ~~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~ 92 (260)
T d1rwia_ 13 RLSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVL 92 (260)
T ss_dssp CCCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCCEEC
T ss_pred cCCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcCCCCEEEeeeeeceeeeeeeccceeee
Confidence 34558999999999766654 45777777765543333222222345688999999887777666667666555444433
Q ss_pred eecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 005096 223 NKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSG 302 (715)
Q Consensus 223 ~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~ 302 (715)
.. .......++++.++++++++-..+..+.+++...................|+++++++++++...++.|..+|.+..
T Consensus 93 ~~-~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~ 171 (260)
T d1rwia_ 93 PF-DGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESN 171 (260)
T ss_dssp CC-CSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTC
T ss_pred ee-eeeeecccccccccceeEeeccccccccccccccceeeeeeecccCCcceeeecCCCCEeeeccccccccccccccc
Confidence 32 23456789999999988777666777888876554333322223345678999999998888888889999998755
Q ss_pred ceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEE
Q 005096 303 RELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHW 382 (715)
Q Consensus 303 ~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iw 382 (715)
.........-.....|++.++++++++....+.|..++.............-.....|++++ +++++++-..+++|+.+
T Consensus 172 ~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~~~~~~~~~~~P~~i~~d~-~g~l~vad~~~~rI~~i 250 (260)
T d1rwia_ 172 NQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDS-DRTVYVADRGNDRVVKL 250 (260)
T ss_dssp CEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCCEECCCCSCCCEEEEEECT-TCCEEEEEGGGTEEEEE
T ss_pred eeeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeEEEEccCCCCCeEEEEEeC-CCCEEEEECCCCEEEEE
Confidence 43332223445678999999999887777788888888664432222222335678999998 67777776667767655
Q ss_pred Ec
Q 005096 383 LV 384 (715)
Q Consensus 383 d~ 384 (715)
+.
T Consensus 251 ~~ 252 (260)
T d1rwia_ 251 TS 252 (260)
T ss_dssp CC
T ss_pred eC
Confidence 44
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.29 E-value=2.7e-10 Score=114.10 Aligned_cols=237 Identities=10% Similarity=-0.013 Sum_probs=159.1
Q ss_pred CEEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEe
Q 005096 188 AIRSMVWSHNDNWMVSGD-DGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSL 266 (715)
Q Consensus 188 ~V~~l~~spdg~~L~tgs-~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l 266 (715)
.-..|+++++|+++++.. ..+.|..++...................|+++++++++++...++.|++++..+...+...
T Consensus 15 ~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~~ 94 (260)
T d1rwia_ 15 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPF 94 (260)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECCC
T ss_pred CCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcCCCCEEEeeeeeceeeeeeeccceeeeee
Confidence 357999999999776654 4567777766554433333333345678899999988777666667776665554444333
Q ss_pred cccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeE
Q 005096 267 TGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKE 346 (715)
Q Consensus 267 ~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~ 346 (715)
. ......+|+++++++++++-..+..+.+++...................++++++++++++...++.|..+|.+....
T Consensus 95 ~-~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~ 173 (260)
T d1rwia_ 95 D-GLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQ 173 (260)
T ss_dssp C-SCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCE
T ss_pred e-eeeecccccccccceeEeeccccccccccccccceeeeeeecccCCcceeeecCCCCEeeecccccccccccccccee
Confidence 2 235678999999999887776777788887665433222222234567899999999888888888999999875544
Q ss_pred EEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEe
Q 005096 347 LESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWC 426 (715)
Q Consensus 347 ~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWd 426 (715)
.............|++.+ +++++++....+.|..++........ +....-.....|+++++|.++++-..++.|+.++
T Consensus 174 ~~~~~~~~~~p~gi~~d~-~g~l~vsd~~~~~i~~~~~~~~~~~~-~~~~~~~~P~~i~~d~~g~l~vad~~~~rI~~i~ 251 (260)
T d1rwia_ 174 VVLPFTDITAPWGIAVDE-AGTVYVTEHNTNQVVKLLAGSTTSTV-LPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLT 251 (260)
T ss_dssp EECCCSSCCSEEEEEECT-TCCEEEEETTTTEEEEECTTCSCCEE-CCCCSCCCEEEEEECTTCCEEEEEGGGTEEEEEC
T ss_pred eeeeccccCCCccceeee-eeeeeeeecCCCEEEEEeCCCCeEEE-EccCCCCCeEEEEEeCCCCEEEEECCCCEEEEEe
Confidence 333334456678999988 67888888888888888765543222 2222234678999999999888877777666554
Q ss_pred c
Q 005096 427 R 427 (715)
Q Consensus 427 l 427 (715)
.
T Consensus 252 ~ 252 (260)
T d1rwia_ 252 S 252 (260)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=99.28 E-value=2.1e-09 Score=110.81 Aligned_cols=241 Identities=10% Similarity=0.086 Sum_probs=163.4
Q ss_pred cEEEEEEcCCCCEEEEEeC-------CCeEEEEeCCCCceEEEEecc----CCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 005096 146 SINRVLWTPTGRRLITGSQ-------SGEFTLWNGQSFNFEMILQAH----DHAIRSMVWSHNDNWMVSGDDGGAIKYWQ 214 (715)
Q Consensus 146 ~I~~l~~spdg~~Latgs~-------dg~I~Iwd~~~~~~~~~l~~h----~~~V~~l~~spdg~~L~tgs~dg~I~iwd 214 (715)
....++|.++|+++++... +|+|..||.++++........ ...-..++|.++++.|++++..+.|..++
T Consensus 19 g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~~~ 98 (314)
T d1pjxa_ 19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQ 98 (314)
T ss_dssp TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEEE
T ss_pred CCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeEEEEe
Confidence 3567899999997776433 467999998887765544322 22356899999999888888777788888
Q ss_pred CCCCceeeeecCCC----CCeEEEEEecCCCEEEEEEC---------------CCcEEEEECCCCeeEEEecccCCceEE
Q 005096 215 NNMNNVKANKSAHK----ESVRDLSFCRTDLKFCSCSD---------------DTTVKVWDFARCQEERSLTGHGWDVKS 275 (715)
Q Consensus 215 ~~~~~~~~~~~~h~----~~I~~l~~spd~~~Las~s~---------------Dg~V~iwdl~~~~~~~~l~~~~~~I~s 275 (715)
.+............ ...+++++.+++++.++-.. +|.|+.++.+ ++..... .....-+.
T Consensus 99 ~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~d-g~~~~~~-~~~~~pNG 176 (314)
T d1pjxa_ 99 TDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVD-TAFQFPNG 176 (314)
T ss_dssp TTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEE-EEESSEEE
T ss_pred CCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeec-CceeEee-CCcceeee
Confidence 77654332222211 13678999999988776432 2344444432 3333222 22234467
Q ss_pred EEEcCCCC-----EEEEEeCCCcEEEEECCCCceeE------Eecc-CCCceEEEEEcCCCCEEEEEECCCeEEEEECCC
Q 005096 276 VDWHPTKS-----LLVSGGKDSLVKLWDAKSGRELC------SFHG-HKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRA 343 (715)
Q Consensus 276 i~~spdg~-----~L~sgs~Dg~I~iwDl~s~~~~~------~~~~-~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t 343 (715)
|+|+++++ ++++-+..+.|..||+.....+. .+.. .......+++..+|+++++....+.|.+||.+.
T Consensus 177 i~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~~ 256 (314)
T d1pjxa_ 177 IAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDG 256 (314)
T ss_dssp EEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTC
T ss_pred eEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEEEeCCC
Confidence 89988764 44445667889999876433222 1111 123456899999999888887889999999988
Q ss_pred CeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCC
Q 005096 344 MKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHET 388 (715)
Q Consensus 344 ~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~ 388 (715)
++.+..+.......++++|.++...++++.+.+|+|..+++....
T Consensus 257 g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~~G 301 (314)
T d1pjxa_ 257 GQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRNG 301 (314)
T ss_dssp BSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSCB
T ss_pred CEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECCCCC
Confidence 887777777778899999998444577888888999888875543
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.26 E-value=1.2e-09 Score=115.24 Aligned_cols=271 Identities=11% Similarity=0.061 Sum_probs=161.2
Q ss_pred EEEEEeC--CCeEEEE--eCCCCceEE--EEe-ccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc-eeee-ecCCC
Q 005096 158 RLITGSQ--SGEFTLW--NGQSFNFEM--ILQ-AHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNN-VKAN-KSAHK 228 (715)
Q Consensus 158 ~Latgs~--dg~I~Iw--d~~~~~~~~--~l~-~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~-~~~~-~~~h~ 228 (715)
.|++|+. ++.|+++ |.+++++.. ... .....+..|+|++++++|+++.. +.+..|.+.... .... .....
T Consensus 4 ~l~vGtyt~~~~i~~~~fd~~~~~l~~~~~~~~~~~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~ 82 (365)
T d1jofa_ 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIG 82 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECC
T ss_pred EEEEEeecCCCCEEEEEEcCCCCeEEEeeeeeccCCCCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecCC
Confidence 3666654 4566554 455554422 222 23445677999999999987765 567777665432 2211 12223
Q ss_pred CCeEEEEEecCCCEEEEEE---CCCcEEEEECCCCe-eE--EE--------------ecccCCceEEEEEcCCCCEEEEE
Q 005096 229 ESVRDLSFCRTDLKFCSCS---DDTTVKVWDFARCQ-EE--RS--------------LTGHGWDVKSVDWHPTKSLLVSG 288 (715)
Q Consensus 229 ~~I~~l~~spd~~~Las~s---~Dg~V~iwdl~~~~-~~--~~--------------l~~~~~~I~si~~spdg~~L~sg 288 (715)
.....++++++++.+++.. ..+.|..+.+.... .. .. .......+.++.|+|||++|+++
T Consensus 83 ~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~ 162 (365)
T d1jofa_ 83 GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSA 162 (365)
T ss_dssp SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEE
T ss_pred CCcEEEEECCCCCEEEEEEecCCCCEEEEeEccCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEe
Confidence 3455677788887543332 23555555442210 10 00 01122347899999999988887
Q ss_pred eC-CCcEEEEECCCCceeE---Ee--ccCCCceEEEEEcCCCCEEEEEE-CCCeEEEEECCCCeEE--EE---ee-----
Q 005096 289 GK-DSLVKLWDAKSGRELC---SF--HGHKNMVLCVKWNQNGNWVLTAS-KDQIIKLYDIRAMKEL--ES---FR----- 351 (715)
Q Consensus 289 s~-Dg~I~iwDl~s~~~~~---~~--~~~~~~I~sl~~spdg~~Lasgs-~dg~I~iwDl~t~~~~--~~---~~----- 351 (715)
+. ...|.+|++.....+. .+ .......+.++|+++++++++.. .++.|.+||+...+.. .. +.
T Consensus 163 d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~ 242 (365)
T d1jofa_ 163 DLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPG 242 (365)
T ss_dssp ETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTT
T ss_pred eCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeecccccc
Confidence 64 3578888765432222 11 12345689999999999887666 5789999998765432 11 11
Q ss_pred ---------cCCCCeEEEEEccCCCCEEEEEe-CC-----CcEEEEEcCCCCceEEEee-----ccCCCEEEEEEcC-CC
Q 005096 352 ---------GHRKDVTALAWHPFHEEYFVSGS-LD-----GSIFHWLVGHETPQVEIHN-----VHDNTVWDLAWHP-IG 410 (715)
Q Consensus 352 ---------~h~~~V~~l~~sp~~~~~l~sgs-~D-----G~I~iwd~~~~~~~~~~~~-----~h~~~V~~l~~sp-dg 410 (715)
........+.++| ++++|+++. .+ +.|.+|++.....+..... .......++++++ +|
T Consensus 243 ~~~~~~~~~~~~~~~~~i~~sp-dG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G 321 (365)
T d1jofa_ 243 IPDRDPETGKGLYRADVCALTF-SGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSD 321 (365)
T ss_dssp CCCBCTTTSSBSEEEEEEEECT-TSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCT
T ss_pred ccccccccccccCCccceEECC-CCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCC
Confidence 0112356789999 666666553 22 2377888876554433221 1233567799997 78
Q ss_pred CEEEEE-ECCCeEEEEecCCC
Q 005096 411 YLLCSG-SNDHTTKFWCRNRP 430 (715)
Q Consensus 411 ~~L~sg-s~Dg~I~iWdl~~~ 430 (715)
++|+++ ..++.|.+|+++.+
T Consensus 322 ~~l~va~~~s~~v~v~~~~~~ 342 (365)
T d1jofa_ 322 EWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp TEEEEECSSSCEEEEEEEETT
T ss_pred CEEEEEeCCCCeEEEEEEeCC
Confidence 877666 56799999998654
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=99.23 E-value=5e-09 Score=107.01 Aligned_cols=228 Identities=8% Similarity=0.033 Sum_probs=156.9
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCC--eeEEE
Q 005096 188 AIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARC--QEERS 265 (715)
Q Consensus 188 ~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~--~~~~~ 265 (715)
.+..+++++||+++++...+++|..|+.... ...+......+.+++|.+|++++++...++.+.+|+.... .....
T Consensus 29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~--~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~ 106 (302)
T d2p4oa1 29 FLENLASAPDGTIFVTNHEVGEIVSITPDGN--QQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETL 106 (302)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTTCC--EEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEE
T ss_pred CcCCEEECCCCCEEEEeCCCCEEEEEeCCCC--EEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccceeec
Confidence 5789999999999999998999888886543 2334455678999999999999999888888888886432 22211
Q ss_pred e-cccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEec----------cCCCceEEEEEcCCCCEEEEEECCC
Q 005096 266 L-TGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFH----------GHKNMVLCVKWNQNGNWVLTASKDQ 334 (715)
Q Consensus 266 l-~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~----------~~~~~I~sl~~spdg~~Lasgs~dg 334 (715)
. .......+.+++.++++++++.+.++.|..+|..++....... ........++++. +.++++.+.++
T Consensus 107 ~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~-~~l~~~~~~~~ 185 (302)
T d2p4oa1 107 LTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFG-NFLYVSNTEKM 185 (302)
T ss_dssp EECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEET-TEEEEEETTTT
T ss_pred cccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccC-CceeeecCCCC
Confidence 1 2244568899999999988888888999999988765332221 1122356666653 33445556778
Q ss_pred eEEEEECCCCeEEEE--eecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEE---cCC
Q 005096 335 IIKLYDIRAMKELES--FRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAW---HPI 409 (715)
Q Consensus 335 ~I~iwDl~t~~~~~~--~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~---spd 409 (715)
.|+.+|+........ ..........+++++ +++++++...++.|..|+.+.+...+......-...++++| ++|
T Consensus 186 ~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~-dG~l~va~~~~~~V~~i~p~G~~~~~~~~~~~~~~pt~vafg~~~~D 264 (302)
T d2p4oa1 186 LLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDV-EGNLYGATHIYNSVVRIAPDRSTTIIAQAEQGVIGSTAVAFGQTEGD 264 (302)
T ss_dssp EEEEEEBCTTSCBCCCEEEEESCCCSSEEEBT-TCCEEEECBTTCCEEEECTTCCEEEEECGGGTCTTEEEEEECCSTTT
T ss_pred eEEeccccccccccccccccCCCCCcceEECC-CCCEEEEEcCCCcEEEECCCCCEEEEEecCCCCCCceEEEEcCCCCC
Confidence 898888765433221 112334567799998 77888888888999888765433222222223346899999 667
Q ss_pred CCEEEEEECC
Q 005096 410 GYLLCSGSND 419 (715)
Q Consensus 410 g~~L~sgs~D 419 (715)
++.|++++..
T Consensus 265 ~~~Lyvtt~~ 274 (302)
T d2p4oa1 265 CTAIYVVTNG 274 (302)
T ss_dssp TTEEEEEECT
T ss_pred CCEEEEECCC
Confidence 8888776654
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.21 E-value=2.3e-08 Score=99.16 Aligned_cols=233 Identities=14% Similarity=0.116 Sum_probs=146.6
Q ss_pred eEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCC-C--cEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEE
Q 005096 167 EFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDG-G--AIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKF 243 (715)
Q Consensus 167 ~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~d-g--~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~L 243 (715)
.|+|.|.+..+. +.+..+...+.+.+|||||+.||....+ + .+.+.+...+... .+..+...+....|+++++.|
T Consensus 20 ~l~i~d~dG~~~-~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~spdg~~i 97 (269)
T d2hqsa1 20 ELRVSDYDGYNQ-FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKL 97 (269)
T ss_dssp EEEEEETTSCSC-EEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEE
T ss_pred EEEEEcCCCCCc-EEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCcee-EEeeeecccccceecCCCCee
Confidence 577778664444 4444557778899999999999866443 2 3556666655544 344667888899999999998
Q ss_pred EEEEC-CCc--EEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEE-eCCC--cEEEEECCCCceeEEeccCCCceEE
Q 005096 244 CSCSD-DTT--VKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSG-GKDS--LVKLWDAKSGRELCSFHGHKNMVLC 317 (715)
Q Consensus 244 as~s~-Dg~--V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sg-s~Dg--~I~iwDl~s~~~~~~~~~~~~~I~s 317 (715)
+.... ++. +..+...... ...............++.+++.++.. ..++ .|.++++..+.. ..+.........
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~-~~~~~~~~~~~~ 175 (269)
T d2hqsa1 98 AFALSKTGSLNLYVMDLASGQ-IRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQD 175 (269)
T ss_dssp EEEECTTSSCEEEEEETTTCC-EEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-EECCCSSSEEEE
T ss_pred eEeeecCCccceeeccccccc-ceeeeeccccccccccccccccceecccccCCceEeeeecccccc-eeeecccccccc
Confidence 87664 333 2333333322 23333344445566677777755544 4455 455667665543 334445667888
Q ss_pred EEEcCCCCEEEEEECCC---eEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEE-EEeCC--CcEEEEEcCCCCceE
Q 005096 318 VKWNQNGNWVLTASKDQ---IIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFV-SGSLD--GSIFHWLVGHETPQV 391 (715)
Q Consensus 318 l~~spdg~~Lasgs~dg---~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~-sgs~D--G~I~iwd~~~~~~~~ 391 (715)
..|++++++++..+.++ .|.+.|...+.. .+...........|+| +++.|+ +.... ..|++++++....
T Consensus 176 ~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~p~~SP-DG~~i~f~s~~~~~~~l~~~~~dg~~~-- 250 (269)
T d2hqsa1 176 ADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV--QVLSSTFLDETPSLAP-NGTMVIYSSSQGMGSVLNLVSTDGRFK-- 250 (269)
T ss_dssp EEECTTSSEEEEEEECSSCEEEEEEETTTCCE--EECCCSSSCEEEEECT-TSSEEEEEEEETTEEEEEEEETTSCCE--
T ss_pred cccccccceeEEEeecCCceeeeEeecccccc--eEeecCccccceEECC-CCCEEEEEEcCCCCcEEEEEECCCCCE--
Confidence 99999999988776544 455555554433 3334556678889999 556554 44333 3578888876543
Q ss_pred EEeeccCCCEEEEEEcC
Q 005096 392 EIHNVHDNTVWDLAWHP 408 (715)
Q Consensus 392 ~~~~~h~~~V~~l~~sp 408 (715)
..+....+.+...+|+|
T Consensus 251 ~~lt~~~g~~~~p~WSP 267 (269)
T d2hqsa1 251 ARLPATDGQVKFPAWSP 267 (269)
T ss_dssp EECCCSSSEEEEEEECC
T ss_pred EEEeCCCCcEEeEEeCC
Confidence 33334566788899987
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.20 E-value=2.3e-08 Score=100.69 Aligned_cols=235 Identities=10% Similarity=0.112 Sum_probs=165.9
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEecc------CCCEEEEEEcCCC-CEEEEE-eCCCcEEEEeCCC
Q 005096 146 SINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAH------DHAIRSMVWSHND-NWMVSG-DDGGAIKYWQNNM 217 (715)
Q Consensus 146 ~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h------~~~V~~l~~spdg-~~L~tg-s~dg~I~iwd~~~ 217 (715)
.-..|+++++|+++++-..++.|++||.+ ++.+..+... ...-..+++..+. .++++. +.++.|.+++..
T Consensus 24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~- 101 (279)
T d1q7fa_ 24 EPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY- 101 (279)
T ss_dssp CEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTT-
T ss_pred CccEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCcccccccccc-
Confidence 46899999999987777778899999965 6666665321 1234556665554 444433 344567777654
Q ss_pred Cceeeee-cCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEe--cccCCceEEEEEcCCCCEEEEEeCCCcE
Q 005096 218 NNVKANK-SAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSL--TGHGWDVKSVDWHPTKSLLVSGGKDSLV 294 (715)
Q Consensus 218 ~~~~~~~-~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l--~~~~~~I~si~~spdg~~L~sgs~Dg~I 294 (715)
++....+ .........+++..++.++++....+.+.++|.+ ++.+..+ ..+......++++++++++++....+.|
T Consensus 102 g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V 180 (279)
T d1q7fa_ 102 GQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCV 180 (279)
T ss_dssp SCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEE
T ss_pred ccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccC-CceeecccccccccccceeeeccceeEEeeeccccce
Confidence 4444333 3345667889999999988887777888888854 4555554 3345677889999999988888888999
Q ss_pred EEEECCCCceeEEec--cCCCceEEEEEcCCCCEEEEEEC-CCeEEEEECCCCeEEEEeecC--CCCeEEEEEccCCCCE
Q 005096 295 KLWDAKSGRELCSFH--GHKNMVLCVKWNQNGNWVLTASK-DQIIKLYDIRAMKELESFRGH--RKDVTALAWHPFHEEY 369 (715)
Q Consensus 295 ~iwDl~s~~~~~~~~--~~~~~I~sl~~spdg~~Lasgs~-dg~I~iwDl~t~~~~~~~~~h--~~~V~~l~~sp~~~~~ 369 (715)
++||.. ++.+.++. +.......|++.++|+++++-.. ++.|.+||. +++.+.++... ......|++.+ ++.+
T Consensus 181 ~~~d~~-G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~-~G~~~~~~~~~~~~~~p~~vav~~-dG~l 257 (279)
T d1q7fa_ 181 KVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMD-DGSV 257 (279)
T ss_dssp EEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEET-TTEE
T ss_pred eeeecC-CceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECC-CCCEEEEEeCCCCCCCEeEEEEeC-CCcE
Confidence 999975 66666663 34456789999999997766443 457999984 58877776533 34678999998 5655
Q ss_pred EEEEeCCCcEEEEEcCCC
Q 005096 370 FVSGSLDGSIFHWLVGHE 387 (715)
Q Consensus 370 l~sgs~DG~I~iwd~~~~ 387 (715)
+ +++.+.+|++|.....
T Consensus 258 ~-V~~~n~~v~~fr~~~~ 274 (279)
T d1q7fa_ 258 V-LASKDYRLYIYRYVQL 274 (279)
T ss_dssp E-EEETTTEEEEEECSCC
T ss_pred E-EEeCCCeEEEEEeeee
Confidence 4 4567889999988653
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.20 E-value=1.2e-08 Score=101.34 Aligned_cols=216 Identities=11% Similarity=0.129 Sum_probs=142.1
Q ss_pred CCccEEEEEEcCCCCEEEEEeCCC---eEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeC-CCcEEEE--eCC
Q 005096 143 NRCSINRVLWTPTGRRLITGSQSG---EFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDD-GGAIKYW--QNN 216 (715)
Q Consensus 143 H~~~I~~l~~spdg~~Latgs~dg---~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~-dg~I~iw--d~~ 216 (715)
+...+.+.+|||||++||....+. .+.+.+...+.. ..+..+...+....|+++++.|+.... ++...++ ...
T Consensus 37 ~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~ 115 (269)
T d2hqsa1 37 SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV-RQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLA 115 (269)
T ss_dssp ESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETT
T ss_pred CCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCce-eEEeeeecccccceecCCCCeeeEeeecCCccceeecccc
Confidence 455678899999999999776543 466777766554 455567788899999999998876543 3333333 222
Q ss_pred CCceeeeecCCCCCeEEEEEecCCCEEEEEE-CCC--cEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCC-
Q 005096 217 MNNVKANKSAHKESVRDLSFCRTDLKFCSCS-DDT--TVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDS- 292 (715)
Q Consensus 217 ~~~~~~~~~~h~~~I~~l~~spd~~~Las~s-~Dg--~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg- 292 (715)
.... ..............++.++..++..+ .++ .|.+.++..... ..+...........|+++++.++..+.++
T Consensus 116 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~~~~~~~~~~ 193 (269)
T d2hqsa1 116 SGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGG 193 (269)
T ss_dssp TCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-EECCCSSSEEEEEEECTTSSEEEEEEECSS
T ss_pred cccc-eeeeeccccccccccccccccceecccccCCceEeeeecccccc-eeeecccccccccccccccceeEEEeecCC
Confidence 2222 22333444555566777776655544 444 456666665543 33344566778889999999887766544
Q ss_pred c--EEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECC---CeEEEEECCCCeEEEEeecCCCCeEEEEEcc
Q 005096 293 L--VKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKD---QIIKLYDIRAMKELESFRGHRKDVTALAWHP 364 (715)
Q Consensus 293 ~--I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~d---g~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp 364 (715)
. |.++|...+.. .+...........|+|||++|+..+.. ..|+++|+..+. ...+......+...+|+|
T Consensus 194 ~~~i~~~~~~~~~~--~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~-~~~lt~~~g~~~~p~WSP 267 (269)
T d2hqsa1 194 QQHIAKQDLATGGV--QVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRF-KARLPATDGQVKFPAWSP 267 (269)
T ss_dssp CEEEEEEETTTCCE--EECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCC-EEECCCSSSEEEEEEECC
T ss_pred ceeeeEeecccccc--eEeecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCC-EEEEeCCCCcEEeEEeCC
Confidence 3 44445554433 333355667888999999999866543 478899998554 455666677888899998
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=99.19 E-value=6.7e-09 Score=106.06 Aligned_cols=228 Identities=11% Similarity=0.027 Sum_probs=157.2
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc--eeee
Q 005096 146 SINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNN--VKAN 223 (715)
Q Consensus 146 ~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~--~~~~ 223 (715)
.+..+++++||+++++...+++|+.||... + ...+......+.+++|++|++++++...++.+.+|+..... ....
T Consensus 29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g-~-~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~ 106 (302)
T d2p4oa1 29 FLENLASAPDGTIFVTNHEVGEIVSITPDG-N-QQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETL 106 (302)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTTC-C-EEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEE
T ss_pred CcCCEEECCCCCEEEEeCCCCEEEEEeCCC-C-EEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccceeec
Confidence 588999999999999999999999998554 3 34455567889999999999999988888888888765432 2111
Q ss_pred -ecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecc----------cCCceEEEEEcCCCCEEEEEeCCC
Q 005096 224 -KSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTG----------HGWDVKSVDWHPTKSLLVSGGKDS 292 (715)
Q Consensus 224 -~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~----------~~~~I~si~~spdg~~L~sgs~Dg 292 (715)
..........+++.++++++++.+.++.|..+|.........+.. .......++++. +.++++.+.++
T Consensus 107 ~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~-~~l~~~~~~~~ 185 (302)
T d2p4oa1 107 LTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFG-NFLYVSNTEKM 185 (302)
T ss_dssp EECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEET-TEEEEEETTTT
T ss_pred cccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccC-CceeeecCCCC
Confidence 123445688999999999888888899999999877654433221 122345666653 34556667788
Q ss_pred cEEEEECCCCceeEE--eccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCe-EEEEeecCCCCeEEEEEccC--CC
Q 005096 293 LVKLWDAKSGRELCS--FHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMK-ELESFRGHRKDVTALAWHPF--HE 367 (715)
Q Consensus 293 ~I~iwDl~s~~~~~~--~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~-~~~~~~~h~~~V~~l~~sp~--~~ 367 (715)
.|+.+|+........ ..........++++++|+++++...++.|..++..... .+..........++++|... ++
T Consensus 186 ~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G~~~~~~~~~~~~~~pt~vafg~~~~D~ 265 (302)
T d2p4oa1 186 LLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRSTTIIAQAEQGVIGSTAVAFGQTEGDC 265 (302)
T ss_dssp EEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCCEEEEECGGGTCTTEEEEEECCSTTTT
T ss_pred eEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCCCCEEEEEecCCCCCCceEEEEcCCCCCC
Confidence 888888875432211 11123345679999999988888888999999876332 23333445567899999421 45
Q ss_pred CEEEEEeCC
Q 005096 368 EYFVSGSLD 376 (715)
Q Consensus 368 ~~l~sgs~D 376 (715)
+.|++++..
T Consensus 266 ~~Lyvtt~~ 274 (302)
T d2p4oa1 266 TAIYVVTNG 274 (302)
T ss_dssp TEEEEEECT
T ss_pred CEEEEECCC
Confidence 555544443
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.18 E-value=3.2e-08 Score=99.68 Aligned_cols=236 Identities=12% Similarity=0.135 Sum_probs=161.5
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeecC------CCCCeEEEEEecCCCE-EEEE-ECCCcEEEEECCC
Q 005096 188 AIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSA------HKESVRDLSFCRTDLK-FCSC-SDDTTVKVWDFAR 259 (715)
Q Consensus 188 ~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~~------h~~~I~~l~~spd~~~-Las~-s~Dg~V~iwdl~~ 259 (715)
.-..|+++++++++++-..+..|++||.+ ++.+..+.. ....-..+++..+... +++. +.++.|.+++. +
T Consensus 24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~ 101 (279)
T d1q7fa_ 24 EPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ-Y 101 (279)
T ss_dssp CEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECT-T
T ss_pred CccEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCccccccccc-c
Confidence 45789999999988777778899999865 444444321 1223455666555443 3333 33456777775 4
Q ss_pred CeeEEEec-ccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEe--ccCCCceEEEEEcCCCCEEEEEECCCeE
Q 005096 260 CQEERSLT-GHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSF--HGHKNMVLCVKWNQNGNWVLTASKDQII 336 (715)
Q Consensus 260 ~~~~~~l~-~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~--~~~~~~I~sl~~spdg~~Lasgs~dg~I 336 (715)
++....+. ........+++.++++++++....+.+.++|.+ ++.+..+ ..+......+++.++++++++....+.|
T Consensus 102 g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V 180 (279)
T d1q7fa_ 102 GQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCV 180 (279)
T ss_dssp SCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEE
T ss_pred ccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccC-CceeecccccccccccceeeeccceeEEeeeccccce
Confidence 45555553 344567899999999988888877888888865 5666655 3345678889999999888888888999
Q ss_pred EEEECCCCeEEEEee--cCCCCeEEEEEccCCCCEEEEEeC-CCcEEEEEcCCCCceEEEee-ccCCCEEEEEEcCCCCE
Q 005096 337 KLYDIRAMKELESFR--GHRKDVTALAWHPFHEEYFVSGSL-DGSIFHWLVGHETPQVEIHN-VHDNTVWDLAWHPIGYL 412 (715)
Q Consensus 337 ~iwDl~t~~~~~~~~--~h~~~V~~l~~sp~~~~~l~sgs~-DG~I~iwd~~~~~~~~~~~~-~h~~~V~~l~~spdg~~ 412 (715)
++||.. ++.+.++. +.......|++.+ +++++++-.. +++|.+|+.+ ++.+..+.. ......+.|++.+||.+
T Consensus 181 ~~~d~~-G~~~~~~g~~g~~~~P~giavD~-~G~i~Vad~~~~~~v~~f~~~-G~~~~~~~~~~~~~~p~~vav~~dG~l 257 (279)
T d1q7fa_ 181 KVFNYE-GQYLRQIGGEGITNYPIGVGINS-NGEILIADNHNNFNLTIFTQD-GQLISALESKVKHAQCFDVALMDDGSV 257 (279)
T ss_dssp EEEETT-CCEEEEESCTTTSCSEEEEEECT-TCCEEEEECSSSCEEEEECTT-SCEEEEEEESSCCSCEEEEEEETTTEE
T ss_pred eeeecC-CceeeeecccccccCCccccccc-CCeEEEEECCCCcEEEEECCC-CCEEEEEeCCCCCCCEeEEEEeCCCcE
Confidence 999975 66676664 3445678999998 6677776544 4568888753 332222221 12346889999999975
Q ss_pred EEEEECCCeEEEEecCCC
Q 005096 413 LCSGSNDHTTKFWCRNRP 430 (715)
Q Consensus 413 L~sgs~Dg~I~iWdl~~~ 430 (715)
++ ++.++.|++|+....
T Consensus 258 ~V-~~~n~~v~~fr~~~~ 274 (279)
T d1q7fa_ 258 VL-ASKDYRLYIYRYVQL 274 (279)
T ss_dssp EE-EETTTEEEEEECSCC
T ss_pred EE-EeCCCeEEEEEeeee
Confidence 54 567999999988543
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=99.17 E-value=2e-08 Score=103.24 Aligned_cols=242 Identities=10% Similarity=0.101 Sum_probs=158.6
Q ss_pred CEEEEEEcCCCCEEEEEeC-------CCcEEEEeCCCCceeeeecCC----CCCeEEEEEecCCCEEEEEECCCcEEEEE
Q 005096 188 AIRSMVWSHNDNWMVSGDD-------GGAIKYWQNNMNNVKANKSAH----KESVRDLSFCRTDLKFCSCSDDTTVKVWD 256 (715)
Q Consensus 188 ~V~~l~~spdg~~L~tgs~-------dg~I~iwd~~~~~~~~~~~~h----~~~I~~l~~spd~~~Las~s~Dg~V~iwd 256 (715)
....++|.++|+++++... ++.|..||.+++......... ...-..++|.++++.|+++...+.|..+|
T Consensus 19 g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~~~ 98 (314)
T d1pjxa_ 19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQ 98 (314)
T ss_dssp TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEEE
T ss_pred CCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeEEEEe
Confidence 4567899999998876433 467888888877654433221 22356899999999888888878899999
Q ss_pred CCCCeeEEEecccC----CceEEEEEcCCCCEEEEEeC---------------CCcEEEEECCCCceeEEeccCCCceEE
Q 005096 257 FARCQEERSLTGHG----WDVKSVDWHPTKSLLVSGGK---------------DSLVKLWDAKSGRELCSFHGHKNMVLC 317 (715)
Q Consensus 257 l~~~~~~~~l~~~~----~~I~si~~spdg~~L~sgs~---------------Dg~I~iwDl~s~~~~~~~~~~~~~I~s 317 (715)
.+............ ...+.++++++|++.++-.. +|.|..++.+ ++...... .-..-+.
T Consensus 99 ~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~d-g~~~~~~~-~~~~pNG 176 (314)
T d1pjxa_ 99 TDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDT-AFQFPNG 176 (314)
T ss_dssp TTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEE-EESSEEE
T ss_pred CCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeec-CceeEeeC-Ccceeee
Confidence 86654332222111 13578999999987776432 2334444433 33332222 2233467
Q ss_pred EEEcCCCC----EEE-EEECCCeEEEEECCCCeEEE------Eeec-CCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcC
Q 005096 318 VKWNQNGN----WVL-TASKDQIIKLYDIRAMKELE------SFRG-HRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVG 385 (715)
Q Consensus 318 l~~spdg~----~La-sgs~dg~I~iwDl~t~~~~~------~~~~-h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~ 385 (715)
++|+++++ +|+ +-+..+.|..||+.....+. .+.. .......+++.. +++++++....+.|.+||-+
T Consensus 177 i~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~-~GnlyVa~~~~g~I~~~dp~ 255 (314)
T d1pjxa_ 177 IAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDE-DNNLLVANWGSSHIEVFGPD 255 (314)
T ss_dssp EEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBT-TCCEEEEEETTTEEEEECTT
T ss_pred eEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEec-CCcEEEEEcCCCEEEEEeCC
Confidence 89988764 444 44567889999876432221 2221 123456799988 78888888888999999987
Q ss_pred CCCceEEEeeccCCCEEEEEEcCCCC-EEEEEECCCeEEEEecCCCCCc
Q 005096 386 HETPQVEIHNVHDNTVWDLAWHPIGY-LLCSGSNDHTTKFWCRNRPGDT 433 (715)
Q Consensus 386 ~~~~~~~~~~~h~~~V~~l~~spdg~-~L~sgs~Dg~I~iWdl~~~~~~ 433 (715)
.+.....+. .....+++++|.+|++ ++++.+.+|.|...++...+.+
T Consensus 256 ~g~~~~~i~-~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~~G~~ 303 (314)
T d1pjxa_ 256 GGQPKMRIR-CPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRNGKK 303 (314)
T ss_dssp CBSCSEEEE-CSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSCBCC
T ss_pred CCEEEEEEE-CCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECCCCChh
Confidence 665444443 3456789999999986 5566677898988888776643
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.16 E-value=5.2e-09 Score=110.12 Aligned_cols=245 Identities=11% Similarity=0.069 Sum_probs=150.0
Q ss_pred CCCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc-eEEEE-eccCCCEEEEEEcCCCCEEE--EEe-CCCcEEEEeCC
Q 005096 142 KNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFN-FEMIL-QAHDHAIRSMVWSHNDNWMV--SGD-DGGAIKYWQNN 216 (715)
Q Consensus 142 ~H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~-~~~~l-~~h~~~V~~l~~spdg~~L~--tgs-~dg~I~iwd~~ 216 (715)
.....+.-|+|++++++|+++.. +.+..|.+.... ..... .........++++++++.++ ++. ..+.|..+.+.
T Consensus 37 ~~~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~ 115 (365)
T d1jofa_ 37 PQDEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFY 115 (365)
T ss_dssp CTTCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEES
T ss_pred cCCCCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecCCCCcEEEEECCCCCEEEEEEecCCCCEEEEeEcc
Confidence 34455667999999999988765 467777665422 22221 11223445677788887443 222 23555554432
Q ss_pred CC-------------cee----eeecCCCCCeEEEEEecCCCEEEEEEC-CCcEEEEECCCCeeEE---Ee--cccCCce
Q 005096 217 MN-------------NVK----ANKSAHKESVRDLSFCRTDLKFCSCSD-DTTVKVWDFARCQEER---SL--TGHGWDV 273 (715)
Q Consensus 217 ~~-------------~~~----~~~~~h~~~I~~l~~spd~~~Las~s~-Dg~V~iwdl~~~~~~~---~l--~~~~~~I 273 (715)
.. ... .........+.++.|++|+++|++++. ...|++|++.....+. .+ .......
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gP 195 (365)
T d1jofa_ 116 KFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHP 195 (365)
T ss_dssp SSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCE
T ss_pred CCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCce
Confidence 21 000 001122335789999999999888865 4578888875432221 11 2235678
Q ss_pred EEEEEcCCCCEEEEEe-CCCcEEEEECCCCceeEEec-------------------cCCCceEEEEEcCCCCEEEEEEC-
Q 005096 274 KSVDWHPTKSLLVSGG-KDSLVKLWDAKSGRELCSFH-------------------GHKNMVLCVKWNQNGNWVLTASK- 332 (715)
Q Consensus 274 ~si~~spdg~~L~sgs-~Dg~I~iwDl~s~~~~~~~~-------------------~~~~~I~sl~~spdg~~Lasgs~- 332 (715)
+.++|+++++++++.. .++.|.+||+..++...... ........+.+++||++|+++..
T Consensus 196 r~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~ 275 (365)
T d1jofa_ 196 RWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRA 275 (365)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEE
T ss_pred EEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEccc
Confidence 8999999999886655 57889999987654322111 11223567899999999988753
Q ss_pred -----CCeEEEEECCCCeEEEE------eecCCCCeEEEEEccCCCCEEEEE-eCCCcEEEEEcCCC
Q 005096 333 -----DQIIKLYDIRAMKELES------FRGHRKDVTALAWHPFHEEYFVSG-SLDGSIFHWLVGHE 387 (715)
Q Consensus 333 -----dg~I~iwDl~t~~~~~~------~~~h~~~V~~l~~sp~~~~~l~sg-s~DG~I~iwd~~~~ 387 (715)
...|.+|++.....+.. .........++++++.++++|+++ ..++.|.+|+++..
T Consensus 276 ~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~ 342 (365)
T d1jofa_ 276 NKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp SSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred CCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCC
Confidence 22477777765322221 112345567899998566765555 57789999988654
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.15 E-value=6.3e-08 Score=99.61 Aligned_cols=229 Identities=8% Similarity=0.004 Sum_probs=155.0
Q ss_pred CCccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCC----CcEEEEeCCCC
Q 005096 143 NRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDG----GAIKYWQNNMN 218 (715)
Q Consensus 143 H~~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~d----g~I~iwd~~~~ 218 (715)
....+..++|.++|+++++-..++.|+.||.++.+....+.........|++++||+++++...+ +.|...+....
T Consensus 38 ~~~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~ 117 (319)
T d2dg1a1 38 KGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGD 117 (319)
T ss_dssp SCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSC
T ss_pred CCcCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCc
Confidence 44456789999999977777788999999988877777776667788999999999988765432 33555555555
Q ss_pred ceeeeecC--CCCCeEEEEEecCCCEEEEEEC------CCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEE-e
Q 005096 219 NVKANKSA--HKESVRDLSFCRTDLKFCSCSD------DTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSG-G 289 (715)
Q Consensus 219 ~~~~~~~~--h~~~I~~l~~spd~~~Las~s~------Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sg-s 289 (715)
........ .....+.+++.++|++.++... .+.|..++.+.. .+..+.......+.|+|++|++.|+++ +
T Consensus 118 ~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~-~~~~~~~~~~~pnGia~s~dg~~lyvad~ 196 (319)
T d2dg1a1 118 NLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFR-TVTPIIQNISVANGIALSTDEKVLWVTET 196 (319)
T ss_dssp SCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSC-CEEEEEEEESSEEEEEECTTSSEEEEEEG
T ss_pred eeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccc-eeEEEeeccceeeeeeeccccceEEEecc
Confidence 44433322 2345788999999987665432 123555554433 333332233446789999999866554 5
Q ss_pred CCCcEEEEECCCC-ceeEEe-------ccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeec------CCC
Q 005096 290 KDSLVKLWDAKSG-RELCSF-------HGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRG------HRK 355 (715)
Q Consensus 290 ~Dg~I~iwDl~s~-~~~~~~-------~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~------h~~ 355 (715)
..+.|+.||++.. ...... .........+++..+|++.++...++.|.+||- +++.+.++.. +..
T Consensus 197 ~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~P~~~~~~~~ 275 (319)
T d2dg1a1 197 TANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHML 275 (319)
T ss_dssp GGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSC
T ss_pred cCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-CCcEEEEEeCCCcCCCcCc
Confidence 6788999998642 222111 112233567999999998888888999999995 6888887763 334
Q ss_pred CeEEEEEccCCCCEEEEE
Q 005096 356 DVTALAWHPFHEEYFVSG 373 (715)
Q Consensus 356 ~V~~l~~sp~~~~~l~sg 373 (715)
.+++++|.+....++++.
T Consensus 276 ~~~~~~~~~~~~~~~~t~ 293 (319)
T d2dg1a1 276 RSTHPQFIPGTNQLIICS 293 (319)
T ss_dssp BCCEEEECTTSCEEEEEE
T ss_pred eeeeEEEeCCCCEEEEEc
Confidence 678999988444444443
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.08 E-value=1e-08 Score=111.40 Aligned_cols=285 Identities=12% Similarity=0.129 Sum_probs=172.2
Q ss_pred EEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccC---CCEEEEEEcCCCCEEEEEe---------CCCcEEEEeCCCC
Q 005096 151 LWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHD---HAIRSMVWSHNDNWMVSGD---------DGGAIKYWQNNMN 218 (715)
Q Consensus 151 ~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~---~~V~~l~~spdg~~L~tgs---------~dg~I~iwd~~~~ 218 (715)
.|.+++.++. -..+|.|.+||+.+++....+.... ..+....||+|+++|+... ..+.+.|+|+.++
T Consensus 23 ~W~~~~~~~~-~~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~ 101 (465)
T d1xfda1 23 KWISDTEFIY-REQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHG 101 (465)
T ss_dssp CBSSSSCBCC-CCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSC
T ss_pred EEeCCCcEEE-EeCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCC
Confidence 4777776543 4567889999999887655555432 3577888999999987764 3467889999988
Q ss_pred ceeeee--cCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEeccc-CCc-----------------eEEEEE
Q 005096 219 NVKANK--SAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGH-GWD-----------------VKSVDW 278 (715)
Q Consensus 219 ~~~~~~--~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~-~~~-----------------I~si~~ 278 (715)
...... ......+....|||||+.||... ++.|++.+..++..++..... ... -..+.|
T Consensus 102 ~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~W 180 (465)
T d1xfda1 102 DPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWW 180 (465)
T ss_dssp CCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEE
T ss_pred ceeeccCccCCccccceeeeccCCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEE
Confidence 754432 22344566789999999998876 567888888766555443321 111 247789
Q ss_pred cCCCCEEEEEeCC-C---------------------------------cEEEEECCCCceeEEec------cCCCceEEE
Q 005096 279 HPTKSLLVSGGKD-S---------------------------------LVKLWDAKSGRELCSFH------GHKNMVLCV 318 (715)
Q Consensus 279 spdg~~L~sgs~D-g---------------------------------~I~iwDl~s~~~~~~~~------~~~~~I~sl 318 (715)
||||++||....| . .+.++|++++....... ....-+..+
T Consensus 181 SPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~ 260 (465)
T d1xfda1 181 SPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMV 260 (465)
T ss_dssp CTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEE
T ss_pred CCCCCeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeee
Confidence 9999999876422 2 24455655443222211 112246789
Q ss_pred EEcCCCCEEEEEEC-C---CeEEEEECCCCeEEEEeecCC-CCe----EEEEEccCCCCEEEE--EeCCC--cEEEEEcC
Q 005096 319 KWNQNGNWVLTASK-D---QIIKLYDIRAMKELESFRGHR-KDV----TALAWHPFHEEYFVS--GSLDG--SIFHWLVG 385 (715)
Q Consensus 319 ~~spdg~~Lasgs~-d---g~I~iwDl~t~~~~~~~~~h~-~~V----~~l~~sp~~~~~l~s--gs~DG--~I~iwd~~ 385 (715)
.|++++++++.... + ..|.++|..++++...+.... ..| ....|++++..+++. ...+| .++.+++.
T Consensus 261 ~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~~~~~ 340 (465)
T d1xfda1 261 KWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVS 340 (465)
T ss_dssp EESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEE
T ss_pred EEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEEcCCceEeccCCceeEccCCCeeEEEEeeeecccCceEEEEec
Confidence 99999886665432 2 268889999988766554322 222 345788855554332 22333 34433321
Q ss_pred -----CCCceEEEeeccCCCEEEE-EEcCCCCEEE-EEECC--CeEEEEecCCCCCccccc
Q 005096 386 -----HETPQVEIHNVHDNTVWDL-AWHPIGYLLC-SGSND--HTTKFWCRNRPGDTARDK 437 (715)
Q Consensus 386 -----~~~~~~~~~~~h~~~V~~l-~~spdg~~L~-sgs~D--g~I~iWdl~~~~~~~~~~ 437 (715)
........+....-.|..+ .|+.+++.|+ ++..+ +.-.||.++..+...+.+
T Consensus 341 ~~~~~~~~~~~~~LT~G~w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~~~~~ 401 (465)
T d1xfda1 341 SSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQC 401 (465)
T ss_dssp CSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBC
T ss_pred cccccCCCceeEEeccCCceEEEEEEEcCCCCEEEEEEeCCCCCceEEEEEECCCCCccee
Confidence 1122222222234456665 6888876665 44443 345678877665544443
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.08 E-value=1.7e-07 Score=96.32 Aligned_cols=229 Identities=8% Similarity=0.041 Sum_probs=151.1
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECC----CcEEEEECCCCee
Q 005096 187 HAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDD----TTVKVWDFARCQE 262 (715)
Q Consensus 187 ~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~D----g~V~iwdl~~~~~ 262 (715)
..+..++|.++++++++-..++.|..|+.+.+.....+.........|++.+|++++++...+ +.|...+......
T Consensus 40 ~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~ 119 (319)
T d2dg1a1 40 LQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNL 119 (319)
T ss_dssp CCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSC
T ss_pred cCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCcee
Confidence 345689999999977777788999999988877666655666778999999999877765432 3355555554443
Q ss_pred EEEecc--cCCceEEEEEcCCCCEEEEEeC------CCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEE-ECC
Q 005096 263 ERSLTG--HGWDVKSVDWHPTKSLLVSGGK------DSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTA-SKD 333 (715)
Q Consensus 263 ~~~l~~--~~~~I~si~~spdg~~L~sgs~------Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasg-s~d 333 (715)
...... .......+++.++|++.++... .+.+..++.+. +.+..+...-...+.|+|++|++.|+++ +..
T Consensus 120 ~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg-~~~~~~~~~~~~pnGia~s~dg~~lyvad~~~ 198 (319)
T d2dg1a1 120 QDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDF-RTVTPIIQNISVANGIALSTDEKVLWVTETTA 198 (319)
T ss_dssp EEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTS-CCEEEEEEEESSEEEEEECTTSSEEEEEEGGG
T ss_pred eeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEeccc-ceeEEEeeccceeeeeeeccccceEEEecccC
Confidence 333322 2345778999999986665432 12355555543 3333333233446789999999877655 467
Q ss_pred CeEEEEECCCC-eEEE----E---eecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEee-----ccCCC
Q 005096 334 QIIKLYDIRAM-KELE----S---FRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHN-----VHDNT 400 (715)
Q Consensus 334 g~I~iwDl~t~-~~~~----~---~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~-----~h~~~ 400 (715)
+.|+.||+... .... . ..........+++.. +++++++...++.|.+||- .++.+.++.. .+...
T Consensus 199 ~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~-~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~P~~~~~~~~~ 276 (319)
T d2dg1a1 199 NRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDS-DDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLR 276 (319)
T ss_dssp TEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBT-TCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCB
T ss_pred CceEEEEEcCCCceeccccceeeeccCCccceeeeeEcC-CCCEEEEEcCCCEEEEECC-CCcEEEEEeCCCcCCCcCce
Confidence 89999998642 1111 1 111223356799988 7888888888999999995 4444444432 23346
Q ss_pred EEEEEEcCCCCEEEEEEC
Q 005096 401 VWDLAWHPIGYLLCSGSN 418 (715)
Q Consensus 401 V~~l~~spdg~~L~sgs~ 418 (715)
+++++|.+++..|++.+.
T Consensus 277 ~~~~~~~~~~~~~~~t~~ 294 (319)
T d2dg1a1 277 STHPQFIPGTNQLIICSN 294 (319)
T ss_dssp CCEEEECTTSCEEEEEEE
T ss_pred eeeEEEeCCCCEEEEEcC
Confidence 789999988777766554
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.02 E-value=2.1e-08 Score=108.90 Aligned_cols=282 Identities=10% Similarity=0.061 Sum_probs=167.6
Q ss_pred cEEEEEEcCCCCEEEEEe---------CCCeEEEEeCCCCceEEEEec--cCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 005096 146 SINRVLWTPTGRRLITGS---------QSGEFTLWNGQSFNFEMILQA--HDHAIRSMVWSHNDNWMVSGDDGGAIKYWQ 214 (715)
Q Consensus 146 ~I~~l~~spdg~~Latgs---------~dg~I~Iwd~~~~~~~~~l~~--h~~~V~~l~~spdg~~L~tgs~dg~I~iwd 214 (715)
.+....||+|+++|+... ..+.+.|+|+.+++....... ....+....|||||+.||... ++.|.+.+
T Consensus 62 ~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~ 140 (465)
T d1xfda1 62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCA 140 (465)
T ss_dssp TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEES
T ss_pred ccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCccccceeeeccCCceEEEEe-cceEEEEe
Confidence 456678999999988764 357899999998876554332 234566789999999998765 56788888
Q ss_pred CCCCceeeeecCC-CCC-----------------eEEEEEecCCCEEEEEECC-Cc------------------------
Q 005096 215 NNMNNVKANKSAH-KES-----------------VRDLSFCRTDLKFCSCSDD-TT------------------------ 251 (715)
Q Consensus 215 ~~~~~~~~~~~~h-~~~-----------------I~~l~~spd~~~Las~s~D-g~------------------------ 251 (715)
...+..+...... ... -..+.|||||++||....| ..
T Consensus 141 ~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~ 220 (465)
T d1xfda1 141 HVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPK 220 (465)
T ss_dssp SSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCB
T ss_pred cCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEecccccceeecccccccccceeeeeeccc
Confidence 7766554433221 111 2467899999999876532 22
Q ss_pred ---------EEEEECCCCeeEEEec------ccCCceEEEEEcCCCCEEEEEeC-C---CcEEEEECCCCceeEEecc-C
Q 005096 252 ---------VKVWDFARCQEERSLT------GHGWDVKSVDWHPTKSLLVSGGK-D---SLVKLWDAKSGRELCSFHG-H 311 (715)
Q Consensus 252 ---------V~iwdl~~~~~~~~l~------~~~~~I~si~~spdg~~L~sgs~-D---g~I~iwDl~s~~~~~~~~~-~ 311 (715)
+.|+|++++....... ....-+..+.|++++++++.... + ..|.++|..++++...+.. .
T Consensus 221 ~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~ 300 (465)
T d1xfda1 221 AGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDES 300 (465)
T ss_dssp TTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEEC
T ss_pred cCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEEcC
Confidence 4445554332221111 11223678899999886655432 2 2588899999887655542 2
Q ss_pred CCce----EEEEEcCCCCEEEE--EE-CCC--eEEEEECC------CCeEEEEeecCCCCeEEE-EEccCCCCEEEEEeC
Q 005096 312 KNMV----LCVKWNQNGNWVLT--AS-KDQ--IIKLYDIR------AMKELESFRGHRKDVTAL-AWHPFHEEYFVSGSL 375 (715)
Q Consensus 312 ~~~I----~sl~~spdg~~Las--gs-~dg--~I~iwDl~------t~~~~~~~~~h~~~V~~l-~~sp~~~~~l~sgs~ 375 (715)
..+| ....|++||+.++. .+ .+| .+..+++. .++.+..+....-.|..+ .|+..++.+++++..
T Consensus 301 ~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~~~~~~~~~~~~~~~~~~LT~G~w~V~~i~~~d~~~~~vyF~a~~ 380 (465)
T d1xfda1 301 EAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTE 380 (465)
T ss_dssp SSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESS
T ss_pred CceEeccCCceeEccCCCeeEEEEeeeecccCceEEEEeccccccCCCceeEEeccCCceEEEEEEEcCCCCEEEEEEeC
Confidence 2333 34678999875432 22 333 34444332 233344444445556665 577755566666665
Q ss_pred CC--cEEEEEcC--CCCceEEE--eeccCCCEEEEEEcCCCCEEEEEECC---CeEEEEecC
Q 005096 376 DG--SIFHWLVG--HETPQVEI--HNVHDNTVWDLAWHPIGYLLCSGSND---HTTKFWCRN 428 (715)
Q Consensus 376 DG--~I~iwd~~--~~~~~~~~--~~~h~~~V~~l~~spdg~~L~sgs~D---g~I~iWdl~ 428 (715)
++ .-.+|.++ .......+ ..........+.||+++++++..+.. -.+.+++..
T Consensus 381 ~~p~~~hly~v~l~g~~~~~~lt~~~~~~~~~~~~~~S~~~~y~v~~~s~~~~P~~~~~~~~ 442 (465)
T d1xfda1 381 DLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCEGPGVPMVTVHNTT 442 (465)
T ss_dssp SCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECCSSSSCCEEEEETT
T ss_pred CCCCceEEEEEECCCCCcceeeccccCCCCCEEEEEECCCCCEEEEEeecCCCCeEEEEECC
Confidence 43 33455543 22221111 11234456789999999988865543 456777654
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.86 E-value=2.6e-06 Score=86.18 Aligned_cols=222 Identities=9% Similarity=0.007 Sum_probs=152.8
Q ss_pred EEEEEcCCCCEEEEE-eCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeecC
Q 005096 148 NRVLWTPTGRRLITG-SQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSA 226 (715)
Q Consensus 148 ~~l~~spdg~~Latg-s~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~~ 226 (715)
-+..|++....|+.. -..+.|..||.++++... + .....+.++++..+++++++ +.+ .|.++|..+++.......
T Consensus 21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~~-~-~~~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~~~~l~~~ 96 (295)
T d2ghsa1 21 EGPTFDPASGTAWWFNILERELHELHLASGRKTV-H-ALPFMGSALAKISDSKQLIA-SDD-GLFLRDTATGVLTLHAEL 96 (295)
T ss_dssp EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE-E-ECSSCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEEEEECS
T ss_pred eCCeEECCCCEEEEEECCCCEEEEEECCCCeEEE-E-ECCCCcEEEEEecCCCEEEE-EeC-ccEEeecccceeeEEeee
Confidence 466788755555544 467889999998876542 2 23567889999988877665 444 588999988876544321
Q ss_pred ----CCCCeEEEEEecCCCEEEEEEC----CCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEE-eCCCcEEEE
Q 005096 227 ----HKESVRDLSFCRTDLKFCSCSD----DTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSG-GKDSLVKLW 297 (715)
Q Consensus 227 ----h~~~I~~l~~spd~~~Las~s~----Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sg-s~Dg~I~iw 297 (715)
....++++.+.++|++.++... .+.-.+|.+.+++....+. .-..-+.++|+++++.|+.+ +..+.|..|
T Consensus 97 ~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~-~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~ 175 (295)
T d2ghsa1 97 ESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFA-DISIPNSICFSPDGTTGYFVDTKVNRLMRV 175 (295)
T ss_dssp STTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEE-EESSEEEEEECTTSCEEEEEETTTCEEEEE
T ss_pred ecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEee-ccCCcceeeecCCCceEEEeecccceeeEe
Confidence 2235889999999987776543 2345667776665554443 23346789999999866554 557788888
Q ss_pred ECCCC------ce--eEEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEc-cCCCC
Q 005096 298 DAKSG------RE--LCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWH-PFHEE 368 (715)
Q Consensus 298 Dl~s~------~~--~~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~s-p~~~~ 368 (715)
++... +. ...+.........+++..+|++.++.-..+.|..||- +++.+..+..-...+++++|- ++.+.
T Consensus 176 ~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp-~G~~~~~i~lP~~~~T~~~FGG~d~~~ 254 (295)
T d2ghsa1 176 PLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASR 254 (295)
T ss_dssp EBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSCE
T ss_pred eecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecC-CCcEeeEecCCCCceEEEEEeCCCCCE
Confidence 87531 11 1222344556888999999998887778889999995 688899988777789999996 33344
Q ss_pred EEEEEeC
Q 005096 369 YFVSGSL 375 (715)
Q Consensus 369 ~l~sgs~ 375 (715)
+++|...
T Consensus 255 LyvTta~ 261 (295)
T d2ghsa1 255 LLVTSAR 261 (295)
T ss_dssp EEEEEBC
T ss_pred EEEEECC
Confidence 5555443
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.69 E-value=2.5e-05 Score=78.62 Aligned_cols=219 Identities=10% Similarity=0.002 Sum_probs=143.5
Q ss_pred EEEEEcCCCCEE-EEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecc
Q 005096 190 RSMVWSHNDNWM-VSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTG 268 (715)
Q Consensus 190 ~~l~~spdg~~L-~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~ 268 (715)
....|++.++.| ++--..+.|..||.++++.... .....+.++++..++.++++ +.+ .|.++|..+++.......
T Consensus 21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~~~--~~~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~~~~l~~~ 96 (295)
T d2ghsa1 21 EGPTFDPASGTAWWFNILERELHELHLASGRKTVH--ALPFMGSALAKISDSKQLIA-SDD-GLFLRDTATGVLTLHAEL 96 (295)
T ss_dssp EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEE--ECSSCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEEEEECS
T ss_pred eCCeEECCCCEEEEEECCCCEEEEEECCCCeEEEE--ECCCCcEEEEEecCCCEEEE-EeC-ccEEeecccceeeEEeee
Confidence 356677655444 4444668899999888765432 23567889999988876654 554 589999988765543321
Q ss_pred ----cCCceEEEEEcCCCCEEEEEeC----CCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEE-CCCeEEEE
Q 005096 269 ----HGWDVKSVDWHPTKSLLVSGGK----DSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTAS-KDQIIKLY 339 (715)
Q Consensus 269 ----~~~~I~si~~spdg~~L~sgs~----Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs-~dg~I~iw 339 (715)
....++++.+.++|++.++... .+.-.+|.+..++....+. .-..-+.++|+++++.|+.+. ..+.|..|
T Consensus 97 ~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~-~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~ 175 (295)
T d2ghsa1 97 ESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFA-DISIPNSICFSPDGTTGYFVDTKVNRLMRV 175 (295)
T ss_dssp STTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEE-EESSEEEEEECTTSCEEEEEETTTCEEEEE
T ss_pred ecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEee-ccCCcceeeecCCCceEEEeecccceeeEe
Confidence 2235789999999997666543 2345667766665444443 333467899999998766554 57789988
Q ss_pred ECCCC--------eEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEc-CCC
Q 005096 340 DIRAM--------KELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWH-PIG 410 (715)
Q Consensus 340 Dl~t~--------~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s-pdg 410 (715)
++... .....+.........+++.. ++++.++.-..+.|.+||-+ ++.+..+ ..-...+++++|- +|.
T Consensus 176 ~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~-~GnlWva~~~~g~V~~~dp~-G~~~~~i-~lP~~~~T~~~FGG~d~ 252 (295)
T d2ghsa1 176 PLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDA-EGHIWNARWGEGAVDRYDTD-GNHIARY-EVPGKQTTCPAFIGPDA 252 (295)
T ss_dssp EBCTTTCCBSSCCEEEEECTTSSSEEEEEEECT-TSCEEEEEETTTEEEEECTT-CCEEEEE-ECSCSBEEEEEEESTTS
T ss_pred eecccccccccceEEEeccCcccccccceEEcC-CCCEEeeeeCCCceEEecCC-CcEeeEe-cCCCCceEEEEEeCCCC
Confidence 87421 11222334455678899987 77888887788899999953 4444333 3334579999996 455
Q ss_pred CEEEEE
Q 005096 411 YLLCSG 416 (715)
Q Consensus 411 ~~L~sg 416 (715)
+.|++.
T Consensus 253 ~~LyvT 258 (295)
T d2ghsa1 253 SRLLVT 258 (295)
T ss_dssp CEEEEE
T ss_pred CEEEEE
Confidence 555443
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.55 E-value=8.2e-05 Score=73.40 Aligned_cols=246 Identities=6% Similarity=-0.026 Sum_probs=155.2
Q ss_pred EEEEEeCCCeEEEEeCCCCc-----eEEEEeccCCCEEEEEEcCCCCEEEEE-eCCCcEEEEeCCCCceeeeecCCCCCe
Q 005096 158 RLITGSQSGEFTLWNGQSFN-----FEMILQAHDHAIRSMVWSHNDNWMVSG-DDGGAIKYWQNNMNNVKANKSAHKESV 231 (715)
Q Consensus 158 ~Latgs~dg~I~Iwd~~~~~-----~~~~l~~h~~~V~~l~~spdg~~L~tg-s~dg~I~iwd~~~~~~~~~~~~h~~~I 231 (715)
+|+.+.. +.|+-.+++..+ ....+..+...+..|+|...++.|+.+ ..++.|+..+++.......+......+
T Consensus 3 fLl~s~~-~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p 81 (263)
T d1npea_ 3 HLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSP 81 (263)
T ss_dssp EEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCE
T ss_pred EEEEeCC-CeEEEEECCCccccccccccccccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccc
Confidence 4444443 356666654332 223344445567889998877777655 456778888887766555554445678
Q ss_pred EEEEEecCCCEEEEEE-CCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCC-C--cEEEEECCCCceeEE
Q 005096 232 RDLSFCRTDLKFCSCS-DDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKD-S--LVKLWDAKSGRELCS 307 (715)
Q Consensus 232 ~~l~~spd~~~Las~s-~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~D-g--~I~iwDl~s~~~~~~ 307 (715)
.+|++..-+..|+.+. ..+.|.+.+++.......+.........|+++|...+|+....+ + .|...+++.......
T Consensus 82 ~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i 161 (263)
T d1npea_ 82 EGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRIL 161 (263)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEE
T ss_pred cEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceee
Confidence 8999987666666554 56789999987655444444444678999999988877765433 2 354456664443333
Q ss_pred eccCCCceEEEEEcCCCCEEEEEE-CCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCC
Q 005096 308 FHGHKNMVLCVKWNQNGNWVLTAS-KDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGH 386 (715)
Q Consensus 308 ~~~~~~~I~sl~~spdg~~Lasgs-~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~ 386 (715)
....-.....|+++..++.|+.+. ..+.|...|+........+.+. ....+|++. ++.++++-...+.|...|..+
T Consensus 162 ~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~~-~~P~~lav~--~~~lYwtd~~~~~I~~~~~~~ 238 (263)
T d1npea_ 162 AQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGL-QYPFAVTSY--GKNLYYTDWKTNSVIAMDLAI 238 (263)
T ss_dssp ECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECC-CSEEEEEEE--TTEEEEEETTTTEEEEEETTT
T ss_pred eeecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEECCC-CCcEEEEEE--CCEEEEEECCCCEEEEEECCC
Confidence 443445678999998877777664 5678999999754443344432 345678775 455666666777888888877
Q ss_pred CCceEEEeeccCCCEEEEEEc
Q 005096 387 ETPQVEIHNVHDNTVWDLAWH 407 (715)
Q Consensus 387 ~~~~~~~~~~h~~~V~~l~~s 407 (715)
++....+..........|.+.
T Consensus 239 g~~~~~~~~~~~~~~~gi~v~ 259 (263)
T d1npea_ 239 SKEMDTFHPHKQTRLYGITIA 259 (263)
T ss_dssp TEEEEEECCSSCCCCCCEEEE
T ss_pred CccceEECCCCCCCcceEEEe
Confidence 665544443333344455443
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.48 E-value=5.2e-06 Score=81.64 Aligned_cols=225 Identities=5% Similarity=-0.026 Sum_probs=125.6
Q ss_pred EEcCC--CCEEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEEC-C-----CcEEEEECCCCeeEE
Q 005096 193 VWSHN--DNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSD-D-----TTVKVWDFARCQEER 264 (715)
Q Consensus 193 ~~spd--g~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~-D-----g~V~iwdl~~~~~~~ 264 (715)
.++|| |+.++..+ ++.|.+.|+..++.. .+..+...+...+|||||+.||.... + ..|.++++.+++...
T Consensus 5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~~-~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~ 82 (281)
T d1k32a2 5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGSTR-KIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKR 82 (281)
T ss_dssp CEEEEEETTEEEEEE-TTEEEEEETTTCCEE-EEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEE
T ss_pred ccCCCCCCCEEEEEe-CCcEEEEECCCCCEE-EEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEE
Confidence 45788 88887664 467888899887765 45566778899999999999886543 2 247788887776554
Q ss_pred Eecc------cCCceEEEEEcCCCCEEEEEeCC------CcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEEC
Q 005096 265 SLTG------HGWDVKSVDWHPTKSLLVSGGKD------SLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASK 332 (715)
Q Consensus 265 ~l~~------~~~~I~si~~spdg~~L~sgs~D------g~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~ 332 (715)
.... .......+.|++|++.|+..... ..+.+.+...+...... ......+.+..++.+++....
T Consensus 83 lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 159 (281)
T d1k32a2 83 ITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLN---LGPATHILFADGRRVIGRNTF 159 (281)
T ss_dssp CCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECC---SCSCSEEEEETTEEEEEESCS
T ss_pred eeecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEEec---CCccceeeecCCCeEEEeecc
Confidence 3221 12345688999999988876432 23455565544332221 222223333333333333222
Q ss_pred CC-----------eEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCC--cEEEEEcCCCCceEEEeeccCC
Q 005096 333 DQ-----------IIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDG--SIFHWLVGHETPQVEIHNVHDN 399 (715)
Q Consensus 333 dg-----------~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG--~I~iwd~~~~~~~~~~~~~h~~ 399 (715)
+. ...++........ .............++. ..++.....++ .|.++|++..... .+......
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~d~~g~~~~-~lt~~~~~ 235 (281)
T d1k32a2 160 ELPHWKGYRGGTRGKIWIEVNSGAFK-KIVDMSTHVSSPVIVG--HRIYFITDIDGFGQIYSTDLDGKDLR-KHTSFTDY 235 (281)
T ss_dssp CCTTSTTCCSTTCCEEEEEEETTEEE-EEECCSSCCEEEEEET--TEEEEEECTTSSCEEEEEETTSCSCE-ECCCCCSS
T ss_pred ccceeeeeccCCcceeeeecccccee-eccCCccccceeeeec--cccceecccccccceEEEeCCCCceE-EeecCCCc
Confidence 11 1222222222222 2223334445555553 34444444444 4666677655432 22222222
Q ss_pred CEEEEEEcCCCCEEEEEECCCeEEEEecCC
Q 005096 400 TVWDLAWHPIGYLLCSGSNDHTTKFWCRNR 429 (715)
Q Consensus 400 ~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~ 429 (715)
. ...|++||+.|+.. .++.|+++|++.
T Consensus 236 ~--~~~~SpDG~~I~f~-~~~~l~~~d~~~ 262 (281)
T d1k32a2 236 Y--PRHLNTDGRRILFS-KGGSIYIFNPDT 262 (281)
T ss_dssp C--EEEEEESSSCEEEE-ETTEEEEECTTT
T ss_pred c--cccCcCCCCEEEEE-eCCEEEEEECCC
Confidence 3 34689999887764 468888888754
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.47 E-value=4.4e-06 Score=82.23 Aligned_cols=228 Identities=11% Similarity=-0.013 Sum_probs=126.0
Q ss_pred EEcCC--CCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEe-CCC-----cEEEEeCCCCceee
Q 005096 151 LWTPT--GRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGD-DGG-----AIKYWQNNMNNVKA 222 (715)
Q Consensus 151 ~~spd--g~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs-~dg-----~I~iwd~~~~~~~~ 222 (715)
.++|| |++||..+ +|.|++.|+.+++.. .+..+.+.+...+|||||++||... .++ .|.+++..+++...
T Consensus 5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~~-~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~ 82 (281)
T d1k32a2 5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGSTR-KIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKR 82 (281)
T ss_dssp CEEEEEETTEEEEEE-TTEEEEEETTTCCEE-EEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEE
T ss_pred ccCCCCCCCEEEEEe-CCcEEEEECCCCCEE-EEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEE
Confidence 35788 99888765 457999999988765 5666778889999999999997543 222 36777777776554
Q ss_pred eecC------CCCCeEEEEEecCCCEEEEEECC------CcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeC
Q 005096 223 NKSA------HKESVRDLSFCRTDLKFCSCSDD------TTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGK 290 (715)
Q Consensus 223 ~~~~------h~~~I~~l~~spd~~~Las~s~D------g~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~ 290 (715)
.... .......+.|++|++.|+..... ..+.+++.......... ......+.+..++..++....
T Consensus 83 lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 159 (281)
T d1k32a2 83 ITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLN---LGPATHILFADGRRVIGRNTF 159 (281)
T ss_dssp CCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECC---SCSCSEEEEETTEEEEEESCS
T ss_pred eeecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEEec---CCccceeeecCCCeEEEeecc
Confidence 3221 22345778899999998876432 23455555544332221 222233333333333333222
Q ss_pred CC-----------cEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECC--CeEEEEECCCCeEEEEeecCCCCe
Q 005096 291 DS-----------LVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKD--QIIKLYDIRAMKELESFRGHRKDV 357 (715)
Q Consensus 291 Dg-----------~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~d--g~I~iwDl~t~~~~~~~~~h~~~V 357 (715)
+. ...++........ .............++.+. .+.....+ ..|.++|+.+.+.. .+... ...
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~d~~g~~~~-~lt~~-~~~ 235 (281)
T d1k32a2 160 ELPHWKGYRGGTRGKIWIEVNSGAFK-KIVDMSTHVSSPVIVGHR-IYFITDIDGFGQIYSTDLDGKDLR-KHTSF-TDY 235 (281)
T ss_dssp CCTTSTTCCSTTCCEEEEEEETTEEE-EEECCSSCCEEEEEETTE-EEEEECTTSSCEEEEEETTSCSCE-ECCCC-CSS
T ss_pred ccceeeeeccCCcceeeeecccccee-eccCCccccceeeeeccc-cceecccccccceEEEeCCCCceE-EeecC-CCc
Confidence 11 1122222222222 222233444555566542 22333332 36788888765433 33322 222
Q ss_pred EEEEEccCCCCEEEEEeCCCcEEEEEcCCCCc
Q 005096 358 TALAWHPFHEEYFVSGSLDGSIFHWLVGHETP 389 (715)
Q Consensus 358 ~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~ 389 (715)
....|++++..+++ ..++.|+++|+.+++.
T Consensus 236 ~~~~~SpDG~~I~f--~~~~~l~~~d~~~g~~ 265 (281)
T d1k32a2 236 YPRHLNTDGRRILF--SKGGSIYIFNPDTEKI 265 (281)
T ss_dssp CEEEEEESSSCEEE--EETTEEEEECTTTCCE
T ss_pred ccccCcCCCCEEEE--EeCCEEEEEECCCCCE
Confidence 33468885444444 3367899999876653
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.43 E-value=0.00054 Score=67.36 Aligned_cols=232 Identities=10% Similarity=-0.001 Sum_probs=147.6
Q ss_pred EEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCc----eeeeecCCCCCeE
Q 005096 158 RLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGD-DGGAIKYWQNNMNN----VKANKSAHKESVR 232 (715)
Q Consensus 158 ~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs-~dg~I~iwd~~~~~----~~~~~~~h~~~I~ 232 (715)
+|+.+... .|+..++++.+....+. ....+..|+|...++.|+-.. .++.|...+++... ....+......+.
T Consensus 3 fLl~s~~~-~I~~~~l~~~~~~~~~~-~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~ 80 (266)
T d1ijqa1 3 YLFFTNRH-EVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 80 (266)
T ss_dssp EEEEECBS-SEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred EEEEECCC-eEEEEECCCCcceeeeC-CCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcc
Confidence 34444443 48888988766555544 455678999998887776654 45667666654321 2222333345677
Q ss_pred EEEEecCCCEEEEEE-CCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEe--CCCcEEEEECCCCceeEEec
Q 005096 233 DLSFCRTDLKFCSCS-DDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGG--KDSLVKLWDAKSGRELCSFH 309 (715)
Q Consensus 233 ~l~~spd~~~Las~s-~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs--~Dg~I~iwDl~s~~~~~~~~ 309 (715)
+|++...+..|+.+. ..++|.+.+++.......+.........|++++...+|+... ..+.|...++..........
T Consensus 81 glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~ 160 (266)
T d1ijqa1 81 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT 160 (266)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEEC
T ss_pred eEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceecccc
Confidence 888887666666554 567899999987666565665667789999998776666554 33467777776544443444
Q ss_pred cCCCceEEEEEcCCCCEEEEEE-CCCeEEEEECCCCeEEEEeec--CCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCC
Q 005096 310 GHKNMVLCVKWNQNGNWVLTAS-KDQIIKLYDIRAMKELESFRG--HRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGH 386 (715)
Q Consensus 310 ~~~~~I~sl~~spdg~~Lasgs-~dg~I~iwDl~t~~~~~~~~~--h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~ 386 (715)
..-...+.+++++.++.|+.+. ..+.|...|+........+.. ......+|++. ++.++++-..++.|...+..+
T Consensus 161 ~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~--~~~ly~td~~~~~I~~~~~~~ 238 (266)
T d1ijqa1 161 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLT 238 (266)
T ss_dssp SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTT
T ss_pred cccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEE--CCEEEEEECCCCeEEEEECCC
Confidence 3446678999998877777664 567899999875433332222 22345677775 455556655677787777666
Q ss_pred CCceEEE
Q 005096 387 ETPQVEI 393 (715)
Q Consensus 387 ~~~~~~~ 393 (715)
+.....+
T Consensus 239 g~~~~~~ 245 (266)
T d1ijqa1 239 GSDVNLL 245 (266)
T ss_dssp CCCCEEE
T ss_pred CcceEEE
Confidence 5544333
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.34 E-value=0.00025 Score=69.76 Aligned_cols=218 Identities=7% Similarity=-0.027 Sum_probs=145.3
Q ss_pred CccEEEEEEcCCCCEEEEEe-CCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEE-EEeCCCcEEEEeCCCCcee
Q 005096 144 RCSINRVLWTPTGRRLITGS-QSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMV-SGDDGGAIKYWQNNMNNVK 221 (715)
Q Consensus 144 ~~~I~~l~~spdg~~Latgs-~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~-tgs~dg~I~iwd~~~~~~~ 221 (715)
...|.+|+|....++|+.+. .++.|+..+++.......+...-..+.+|++..-++.|+ +-...+.|.+.+++.....
T Consensus 35 ~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~ 114 (263)
T d1npea_ 35 AKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRR 114 (263)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred CCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCceEE
Confidence 34578899998887777664 567898888887666666655456789999976566665 5556689999998876554
Q ss_pred eeecCCCCCeEEEEEecCCCEEEEEECC-C--cEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEE-eCCCcEEEE
Q 005096 222 ANKSAHKESVRDLSFCRTDLKFCSCSDD-T--TVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSG-GKDSLVKLW 297 (715)
Q Consensus 222 ~~~~~h~~~I~~l~~spd~~~Las~s~D-g--~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sg-s~Dg~I~iw 297 (715)
..+.........|++.+...+|+....+ + .|...+++...........-.....|+++..++.|+.+ ...+.|...
T Consensus 115 ~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~ 194 (263)
T d1npea_ 115 VLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECL 194 (263)
T ss_dssp EEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred EEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeeecccccceEEEeecCcEEEEEeCCCCEEEEE
Confidence 4444445678999999988777755433 2 35445665443333333334566899999888877665 456789999
Q ss_pred ECCCCceeEEeccCCCceEEEEEcCCCCEEEEEE-CCCeEEEEECCCCeEEEEee-cCCCCeEEEEEcc
Q 005096 298 DAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTAS-KDQIIKLYDIRAMKELESFR-GHRKDVTALAWHP 364 (715)
Q Consensus 298 Dl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs-~dg~I~iwDl~t~~~~~~~~-~h~~~V~~l~~sp 364 (715)
|++.......+.+.. ...+|++. +++|+... .++.|...|..+++.+..+. ........|++.+
T Consensus 195 ~~~g~~~~~v~~~~~-~P~~lav~--~~~lYwtd~~~~~I~~~~~~~g~~~~~~~~~~~~~~~gi~v~~ 260 (263)
T d1npea_ 195 NPAQPGRRKVLEGLQ-YPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIAL 260 (263)
T ss_dssp ETTEEEEEEEEECCC-SEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEEC
T ss_pred ECCCCCeEEEECCCC-CcEEEEEE--CCEEEEEECCCCEEEEEECCCCccceEECCCCCCCcceEEEeC
Confidence 997554433444333 34577775 45565554 66889999999998877664 3334455555543
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=98.27 E-value=5.1e-05 Score=83.61 Aligned_cols=259 Identities=9% Similarity=0.025 Sum_probs=158.2
Q ss_pred CCEEEEEeCCCeEEEEeCCCCceEEEEeccC----CCEEEEEEcCCCCEEEEEe------CCCcEEEEeCCCCceeeeec
Q 005096 156 GRRLITGSQSGEFTLWNGQSFNFEMILQAHD----HAIRSMVWSHNDNWMVSGD------DGGAIKYWQNNMNNVKANKS 225 (715)
Q Consensus 156 g~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~----~~V~~l~~spdg~~L~tgs------~dg~I~iwd~~~~~~~~~~~ 225 (715)
+..|+.++.||.|.-.|.++++.+......+ ..++.--...+ ..++++. .+|.|+-+|+++++++..+.
T Consensus 115 ~~~i~~~~~~g~l~alda~tG~~~w~~~~~~~~~~~~~t~~p~v~~-~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~ 193 (571)
T d2ad6a1 115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAK-DTVLMGCSGAELGVRGAVNAFDLKTGELKWRAF 193 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEET-TEEEEECBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred CCeEEEEeCCCcEEeeehhhhhhhccccccccccccceeecCeEeC-CeEEEeeccccccccCcEEEEECCCCcEEEEEe
Confidence 3468889999999999999999877654321 11111111113 3444544 36789999999998877543
Q ss_pred CCC-------------------------------------CCe-EEEEEecCCCEEEEEEC----------------CCc
Q 005096 226 AHK-------------------------------------ESV-RDLSFCRTDLKFCSCSD----------------DTT 251 (715)
Q Consensus 226 ~h~-------------------------------------~~I-~~l~~spd~~~Las~s~----------------Dg~ 251 (715)
... ..+ ...++.++...++.+.. ...
T Consensus 194 t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg~~~p~~~~~r~g~n~~s~s 273 (571)
T d2ad6a1 194 ATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMT 273 (571)
T ss_dssp SSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTE
T ss_pred ccCCcccccccccccccccccCcccccccccCCcccccCCCccccccccchhcCeeeeecccccCccccccccccccccc
Confidence 211 111 23455666666665544 245
Q ss_pred EEEEECCCCeeEEEecccCCceE---------EEEEcCCCC---EEEEEeCCCcEEEEECCCCceeEEeccCC-------
Q 005096 252 VKVWDFARCQEERSLTGHGWDVK---------SVDWHPTKS---LLVSGGKDSLVKLWDAKSGRELCSFHGHK------- 312 (715)
Q Consensus 252 V~iwdl~~~~~~~~l~~~~~~I~---------si~~spdg~---~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~------- 312 (715)
|...|+++++.+-.+......+. ...+..+++ .++.++.+|.++++|.++++.+...+...
T Consensus 274 vvAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~i~~~~~~~~~~~~~~ 353 (571)
T d2ad6a1 274 IWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKK 353 (571)
T ss_dssp EEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEE
T ss_pred eeeeeccchhheecccccCccccccccccccceeeeeccCccccceeeccccceEEEEecCCCcEeeeeccCCccccccc
Confidence 78889999998877664322222 112222343 56778899999999999998775432100
Q ss_pred ---------------------Cce-----------EEEEEcCCCCEEEEEECC---------------------------
Q 005096 313 ---------------------NMV-----------LCVKWNQNGNWVLTASKD--------------------------- 333 (715)
Q Consensus 313 ---------------------~~I-----------~sl~~spdg~~Lasgs~d--------------------------- 333 (715)
..+ ...+++|+..++++...+
T Consensus 354 ~~~~~~~~i~~~~~~~~~~~~g~~~~p~~~Gg~~w~~~a~dP~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (571)
T d2ad6a1 354 VDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYP 433 (571)
T ss_dssp ECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEE
T ss_pred ccccccccccCcccccccccCceEEEeccccccccccceECCCCceEEEeccccccccccccccccCCccccccceeecc
Confidence 000 124566666666553322
Q ss_pred ----------CeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEE
Q 005096 334 ----------QIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWD 403 (715)
Q Consensus 334 ----------g~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~ 403 (715)
|.|.-+|+++++.+.+.............. .+.++++++.||.++.+|.++++.+.+........-.-
T Consensus 434 ~~~~~~~~~~G~l~AiD~~TG~~~W~~~~~~~~~~g~l~T--agglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P 511 (571)
T d2ad6a1 434 GPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWGGTLYT--KGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSP 511 (571)
T ss_dssp CTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCSBCEEE--TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCC
T ss_pred ccCCcccCCcccEEEeccCCCceeeEcCCCCCCCcceeEe--cCCEEEEECCCCeEEEEECCCCcEEEEEECCCCceecc
Confidence 467788888888887766333222221111 46677889999999999999999988876544333333
Q ss_pred EEEcCCCC-EEEEEE
Q 005096 404 LAWHPIGY-LLCSGS 417 (715)
Q Consensus 404 l~~spdg~-~L~sgs 417 (715)
+.|..||+ ||++..
T Consensus 512 ~ty~~dGkqYi~v~~ 526 (571)
T d2ad6a1 512 MTYSFKGKQYIGSMY 526 (571)
T ss_dssp EEEEETTEEEEEEEE
T ss_pred eEEEECCEEEEEEEe
Confidence 55555774 554443
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=98.27 E-value=9.4e-05 Score=81.25 Aligned_cols=262 Identities=9% Similarity=0.046 Sum_probs=157.8
Q ss_pred CCEEEEEeCCCeEEEEeCCCCceEEEEeccCCC----EEEEEEcCCCCEEEEEeC------CCcEEEEeCCCCceeeeec
Q 005096 156 GRRLITGSQSGEFTLWNGQSFNFEMILQAHDHA----IRSMVWSHNDNWMVSGDD------GGAIKYWQNNMNNVKANKS 225 (715)
Q Consensus 156 g~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~----V~~l~~spdg~~L~tgs~------dg~I~iwd~~~~~~~~~~~ 225 (715)
+..|+.++.|+.|.-.|.++++.+......... ++..-.. .+..++++.. .|.|.-+|.++++++..+.
T Consensus 117 ~~~v~~~~~~g~l~Alda~tG~~~w~~~~~~~~~~~~~~~~p~v-~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~ 195 (560)
T d1kv9a2 117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRV-VKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFY 195 (560)
T ss_dssp BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred CCeEEEEeCCCEEEEEECCCCcEEeccCccCcccceeeeeeeee-ecCcccccccceeccccceEEEEECCCceEEeeee
Confidence 456888999999999999999988877643211 1100000 1234444332 3679999999998877663
Q ss_pred CCC------------------------------CCe-EEEEEecCCCEEEEEEC-------------------CCcEEEE
Q 005096 226 AHK------------------------------ESV-RDLSFCRTDLKFCSCSD-------------------DTTVKVW 255 (715)
Q Consensus 226 ~h~------------------------------~~I-~~l~~spd~~~Las~s~-------------------Dg~V~iw 255 (715)
... ..+ ..+++.+...+++.+.. ...|...
T Consensus 196 t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~s~D~~~~l~y~~tgn~~~~~~~~~~~~~g~n~~s~sivAl 275 (560)
T d1kv9a2 196 TVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAI 275 (560)
T ss_dssp SSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEE
T ss_pred eccccccCCccccccccccccccccccccccCCCCcccccccccccCeeeecCCCCcccccccccccCCccccceeeEEe
Confidence 210 111 12455566666554332 2357778
Q ss_pred ECCCCeeEEEecccCCceEE---------EEEcCCC---CEEEEEeCCCcEEEEECCCCceeEEeccCC-Cce-------
Q 005096 256 DFARCQEERSLTGHGWDVKS---------VDWHPTK---SLLVSGGKDSLVKLWDAKSGRELCSFHGHK-NMV------- 315 (715)
Q Consensus 256 dl~~~~~~~~l~~~~~~I~s---------i~~spdg---~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~-~~I------- 315 (715)
|+++++.+-.+......+.. +.+..++ +.++.+..+|.++++|.++++.+....... ...
T Consensus 276 d~~tG~~~W~~Q~~~~D~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i~~~~~~~~~~~~~~d~~~ 355 (560)
T d1kv9a2 276 RPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLAT 355 (560)
T ss_dssp CTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTT
T ss_pred cCCccceeEEEeccccccccccccceeeeeeeecCCceeeeeeecCccceEEEEecCCCcccccccccccccccccChhh
Confidence 88888887666543322211 1122233 367778899999999999998875542110 000
Q ss_pred ----------------------------EEEEEcCCCCEEEEEEC-----------------------------------
Q 005096 316 ----------------------------LCVKWNQNGNWVLTASK----------------------------------- 332 (715)
Q Consensus 316 ----------------------------~sl~~spdg~~Lasgs~----------------------------------- 332 (715)
...+++++..++++...
T Consensus 356 ~~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 435 (560)
T d1kv9a2 356 GRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAV 435 (560)
T ss_dssp CCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGG
T ss_pred ccccccccccccccceeeeeccccccccccccccCCCCeeecccccccceeeccccccccccccccccCcccccCCCCcc
Confidence 13456666666665432
Q ss_pred -CCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCC
Q 005096 333 -DQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGY 411 (715)
Q Consensus 333 -dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~ 411 (715)
.|.|.-||+.+++.+.++.......... ++- .+.++++++.||.++.+|.++++.+.+........-.-+.|.-||+
T Consensus 436 ~~G~l~A~D~~tGk~~W~~~~~~~~~gg~-l~T-agglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGk 513 (560)
T d1kv9a2 436 VSGALLAWDPVKQKAAWKVPYPTHWNGGT-LST-AGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGR 513 (560)
T ss_dssp CEEEEEEEETTTTEEEEEEEESSSCCCCE-EEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTE
T ss_pred cccceEEEeCCCCeEeeeccCCCCCCCce-eEE-CCCEEEEECCCCcEEEEECCCCcEeEEEECCCCccccCEEEEECCE
Confidence 2468889999999988876332222111 122 4678888999999999999999998887654322222345555774
Q ss_pred -EEEEEECCC
Q 005096 412 -LLCSGSNDH 420 (715)
Q Consensus 412 -~L~sgs~Dg 420 (715)
+|++.+..|
T Consensus 514 qyv~v~aG~g 523 (560)
T d1kv9a2 514 QYVAIMAGWG 523 (560)
T ss_dssp EEEEEEECCC
T ss_pred EEEEEEeCCC
Confidence 555544333
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.26 E-value=0.0019 Score=63.30 Aligned_cols=227 Identities=7% Similarity=-0.036 Sum_probs=141.9
Q ss_pred EEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEE-CCCcEEEEECCCCe----eEEEecccCCceE
Q 005096 200 WMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCS-DDTTVKVWDFARCQ----EERSLTGHGWDVK 274 (715)
Q Consensus 200 ~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s-~Dg~V~iwdl~~~~----~~~~l~~~~~~I~ 274 (715)
+|+.+.. ..|+..++++.+....+. ....+.+|+|....+.|+-.. .++.|+..+++... ....+......+.
T Consensus 3 fLl~s~~-~~I~~~~l~~~~~~~~~~-~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~ 80 (266)
T d1ijqa1 3 YLFFTNR-HEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 80 (266)
T ss_dssp EEEEECB-SSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred EEEEECC-CeEEEEECCCCcceeeeC-CCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcc
Confidence 3444443 458888888766544443 445678899998887777665 45667777764321 2222333345577
Q ss_pred EEEEcCCCCEEEEE-eCCCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEE--CCCeEEEEECCCCeEEEEee
Q 005096 275 SVDWHPTKSLLVSG-GKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTAS--KDQIIKLYDIRAMKELESFR 351 (715)
Q Consensus 275 si~~spdg~~L~sg-s~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs--~dg~I~iwDl~t~~~~~~~~ 351 (715)
.|+++..++.|+.+ ...+.|.+.+++.......+.........|++++...+|+... ..+.|...++..........
T Consensus 81 glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~ 160 (266)
T d1ijqa1 81 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT 160 (266)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEEC
T ss_pred eEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceecccc
Confidence 88887656655554 4567899999987665555555566789999998777776654 34467777776443333333
Q ss_pred cCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeec-cCCCEEEEEEcCCCCEEEEEECCCeEEEEecCC
Q 005096 352 GHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNV-HDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNR 429 (715)
Q Consensus 352 ~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~-h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~ 429 (715)
..-...+.|++.+.++++.++-...+.|...+++........... ......+|++. ++.++++-..++.|...+...
T Consensus 161 ~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~-~~~ly~td~~~~~I~~~~~~~ 238 (266)
T d1ijqa1 161 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLT 238 (266)
T ss_dssp SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTT
T ss_pred cccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEE-CCEEEEEECCCCeEEEEECCC
Confidence 444667899999855666666677788998898665443322221 22346678877 344445445667776666543
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=98.20 E-value=0.00019 Score=79.02 Aligned_cols=257 Identities=10% Similarity=0.028 Sum_probs=151.2
Q ss_pred CEEEEEeCCCeEEEEeCCCCceEEEEeccCCC---E--EEEEEcCCCCEEEEEeC------CCcEEEEeCCCCceeeeec
Q 005096 157 RRLITGSQSGEFTLWNGQSFNFEMILQAHDHA---I--RSMVWSHNDNWMVSGDD------GGAIKYWQNNMNNVKANKS 225 (715)
Q Consensus 157 ~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~---V--~~l~~spdg~~L~tgs~------dg~I~iwd~~~~~~~~~~~ 225 (715)
..++.++.|+.+.-.|.++++.+......+.. + +..-.. .+..+++++. .|.|+-+|.++++++..+.
T Consensus 129 ~~v~~~t~~g~l~alda~tG~~~W~~~~~~~~~~~~~~~~~p~v-~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~ 207 (573)
T d1kb0a2 129 GKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRV-FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWF 207 (573)
T ss_dssp TEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred CcEEEEecccceeeeccccccceecccCccCCcceEEeecceEE-EeccEEEeeccccccccceEEEEecCCccceeeee
Confidence 36778888999999999999887665532211 1 100000 1344555432 4679999999998877653
Q ss_pred CCC-------------------------------CCe-EEEEEecCCCEEEEEEC-------------------CCcEEE
Q 005096 226 AHK-------------------------------ESV-RDLSFCRTDLKFCSCSD-------------------DTTVKV 254 (715)
Q Consensus 226 ~h~-------------------------------~~I-~~l~~spd~~~Las~s~-------------------Dg~V~i 254 (715)
... ..+ ...++.++...++.... ...|..
T Consensus 208 t~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~G~~vW~~~s~D~~~g~~~~~~g~~~~~~~~~~~~~~g~~~~~~svvA 287 (573)
T d1kb0a2 208 SVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVA 287 (573)
T ss_dssp SSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEE
T ss_pred eccccCCCCCCcccccccccccCCCCceeecCCCCcccccceEchhhCeeeeccCCCccccccccccccccccccceEEE
Confidence 211 111 12445555555554321 124667
Q ss_pred EECCCCeeEEEecccCCceE---------EEEEcCCC---CEEEEEeCCCcEEEEECCCCceeEEeccCCCc--------
Q 005096 255 WDFARCQEERSLTGHGWDVK---------SVDWHPTK---SLLVSGGKDSLVKLWDAKSGRELCSFHGHKNM-------- 314 (715)
Q Consensus 255 wdl~~~~~~~~l~~~~~~I~---------si~~spdg---~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~-------- 314 (715)
.|+++++..-.+......+. ......++ ..++.++.+|.++++|.++++.+.........
T Consensus 288 ld~~tG~~~W~~q~~~~d~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~~lDr~tGe~~~~~~~~~~~~~~~~~~~ 367 (573)
T d1kb0a2 288 LDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKH 367 (573)
T ss_dssp ECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTT
T ss_pred ecccchheeecccccCcccccccccceeeecceecCCCceeeeeeccccceeEEeccccccccccccccccccccccccc
Confidence 78888877665543222221 11222223 36777889999999999999987654311000
Q ss_pred ---------------------------eEEEEEcCCCCEEEEEECC----------------------------------
Q 005096 315 ---------------------------VLCVKWNQNGNWVLTASKD---------------------------------- 333 (715)
Q Consensus 315 ---------------------------I~sl~~spdg~~Lasgs~d---------------------------------- 333 (715)
-...+++++..++++...+
T Consensus 368 ~~~~~~~~~~~~~~~~~~~pg~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 447 (573)
T d1kb0a2 368 GKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFN 447 (573)
T ss_dssp SCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEEC
T ss_pred cceeeeeeccccccceEEeecccCCccccccccCCCcceEEeeccccceeeecccccccccCCCCccccccccccccccc
Confidence 0123566666665543221
Q ss_pred ---------CeEEEEECCCCeEEEEeecCCCCeE-EEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEE
Q 005096 334 ---------QIIKLYDIRAMKELESFRGHRKDVT-ALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWD 403 (715)
Q Consensus 334 ---------g~I~iwDl~t~~~~~~~~~h~~~V~-~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~ 403 (715)
|.|.-||+.+++.+.+++....... .++. .+.+|++|+.||.++.||.++++.+.++.......-.-
T Consensus 448 ~~p~~~~~~G~l~AiD~~tGk~~W~~~~~~p~~gg~lst---agglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P 524 (573)
T d1kb0a2 448 AEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPWNGGTLTT---AGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAP 524 (573)
T ss_dssp SSCCCSCCEEEEEEEETTTTEEEEEEEESSSCCCCEEEE---TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCC
T ss_pred cCCCCCCCcccEEEeCCCCCceEeeecCCCCCCCceEEE---cCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccC
Confidence 3577889999999888764432211 2222 56788889999999999999999988876543211112
Q ss_pred EEEcCCCC-EEEEEE
Q 005096 404 LAWHPIGY-LLCSGS 417 (715)
Q Consensus 404 l~~spdg~-~L~sgs 417 (715)
+.|..||+ +|++.+
T Consensus 525 ~ty~~~GkQYv~v~~ 539 (573)
T d1kb0a2 525 STYMVDGRQYVSVAV 539 (573)
T ss_dssp EEEEETTEEEEEEEE
T ss_pred EEEEECCEEEEEEEe
Confidence 44455775 444433
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=98.19 E-value=0.00023 Score=78.60 Aligned_cols=257 Identities=9% Similarity=0.000 Sum_probs=155.6
Q ss_pred CCEEEEEeCCCeEEEEeCCCCceEEEEeccC----CCEEE-EEEcCCCCEEEEEeC------CCcEEEEeCCCCceeeee
Q 005096 156 GRRLITGSQSGEFTLWNGQSFNFEMILQAHD----HAIRS-MVWSHNDNWMVSGDD------GGAIKYWQNNMNNVKANK 224 (715)
Q Consensus 156 g~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~----~~V~~-l~~spdg~~L~tgs~------dg~I~iwd~~~~~~~~~~ 224 (715)
..+|+.++.|+.|.-.|.++++.+..+...+ ..++. -.+ .++.++++.. .|.|+-+|.++++++..+
T Consensus 121 ~~~v~~~t~dg~l~Alda~tG~~~w~~~~~d~~~~~~~t~~P~v--~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~ 198 (596)
T d1w6sa_ 121 PALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYV--VKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRA 198 (596)
T ss_dssp CCEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE--ETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEE
T ss_pred ceEEEEEeCCCCeEeeccccCceeccccccccccccccccCCcE--ECCeEEEeeccccccccCceEEEECCCCcEEEEe
Confidence 3478899999999999999999988775321 11111 011 1345555543 488999999999988764
Q ss_pred cCCC-------------------------------------C-CeEEEEEecCCCEEEEEECC----------------C
Q 005096 225 SAHK-------------------------------------E-SVRDLSFCRTDLKFCSCSDD----------------T 250 (715)
Q Consensus 225 ~~h~-------------------------------------~-~I~~l~~spd~~~Las~s~D----------------g 250 (715)
.... . .-..+++.+...+++.+..+ .
T Consensus 199 ~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg~~~p~~~~~r~g~n~ys~ 278 (596)
T d1w6sa_ 199 YATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTM 278 (596)
T ss_dssp ESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSS
T ss_pred eccCCccccccccccccccccccccccccccCCCCceecCCCccccccccccCCCeeecccccccccccccccccccccc
Confidence 3211 0 11234555666666665432 3
Q ss_pred cEEEEECCCCeeEEEecccCCc---------eEEEEE-cCCCC---EEEEEeCCCcEEEEECCCCceeEEeccC--CCc-
Q 005096 251 TVKVWDFARCQEERSLTGHGWD---------VKSVDW-HPTKS---LLVSGGKDSLVKLWDAKSGRELCSFHGH--KNM- 314 (715)
Q Consensus 251 ~V~iwdl~~~~~~~~l~~~~~~---------I~si~~-spdg~---~L~sgs~Dg~I~iwDl~s~~~~~~~~~~--~~~- 314 (715)
.|...|+++++.+-.+...... ...+.. ..+++ .++....+|.++++|.++++.+...+.. ...
T Consensus 279 sivAlD~~TG~~~W~~Q~~~~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~tG~~i~~~~~~~~~~~~ 358 (596)
T d1w6sa_ 279 TIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVF 358 (596)
T ss_dssp EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSE
T ss_pred cccccccccccccccccceeccccCCccccceeeeeccccccccccceeccccccceeeecCCCCceeeecccccccccc
Confidence 4888899999988766532221 112221 23443 6778889999999999999877543210 000
Q ss_pred -----------------------e-------------EEEEEcCCCCEEEEEEC--------------------------
Q 005096 315 -----------------------V-------------LCVKWNQNGNWVLTASK-------------------------- 332 (715)
Q Consensus 315 -----------------------I-------------~sl~~spdg~~Lasgs~-------------------------- 332 (715)
- ...+++++..++++...
T Consensus 359 ~~~d~~~~~p~~~~~~~~~~~~~~~~i~pg~~Gg~nw~~~a~dp~~~l~yvp~~~~~~~~~~~~~~~~~g~~~~g~~~~~ 438 (596)
T d1w6sa_ 359 KSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNM 438 (596)
T ss_dssp EEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEE
T ss_pred ccccccccccccCccccccCCccceeEecccccccccCccccCCCCceEEeccccccccccccccccccccccccccccc
Confidence 0 12345555555544321
Q ss_pred -------------CCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCC
Q 005096 333 -------------DQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDN 399 (715)
Q Consensus 333 -------------dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~ 399 (715)
.|.|.-||+.+++.+............. ++. .+.++++|+.||.++.+|.++++.+.++......
T Consensus 439 ~~~~~g~~~~~~~~G~l~A~D~~TG~~~W~~~~~~~~~gg~-lsT-agglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~~~ 516 (596)
T d1w6sa_ 439 YPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFAVWGGT-MAT-AGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGA 516 (596)
T ss_dssp EECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESSCCCSBC-EEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCC
T ss_pred ccCcccCcccCCCcceEEEEeCCCCceecccCCCCCCccce-eEe-cCCEEEEECCCCeEEEEECCCCcEeeEEECCCCc
Confidence 1467888888888877655322211111 122 4677888999999999999999999887654332
Q ss_pred CEEEEEEcCCCC-EEEEE
Q 005096 400 TVWDLAWHPIGY-LLCSG 416 (715)
Q Consensus 400 ~V~~l~~spdg~-~L~sg 416 (715)
.-.=+.|.-||+ ||++.
T Consensus 517 ~a~P~tY~~dGkQYvav~ 534 (596)
T d1w6sa_ 517 IGYPMTYTHKGTQYVAIY 534 (596)
T ss_dssp CSCCEEEEETTEEEEEEE
T ss_pred ccCCeEEEECCEEEEEEE
Confidence 222244445764 45443
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=98.17 E-value=0.00012 Score=75.42 Aligned_cols=270 Identities=10% Similarity=0.024 Sum_probs=144.8
Q ss_pred cEEEEEEcCCCCEEEEEeCCC-----------eEEEEeCCCCceEEE---EeccCCCEEEEEEcCCCCEEEEEeCC-CcE
Q 005096 146 SINRVLWTPTGRRLITGSQSG-----------EFTLWNGQSFNFEMI---LQAHDHAIRSMVWSHNDNWMVSGDDG-GAI 210 (715)
Q Consensus 146 ~I~~l~~spdg~~Latgs~dg-----------~I~Iwd~~~~~~~~~---l~~h~~~V~~l~~spdg~~L~tgs~d-g~I 210 (715)
.+...+...+|+.++.|+.+. .+.+||..+++.... ...+.......++..++++++.|+.+ ..+
T Consensus 21 ~~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~ 100 (387)
T d1k3ia3 21 PAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKT 100 (387)
T ss_dssp CSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCE
T ss_pred ccEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcce
Confidence 344555667888888887531 377999887654322 22233334466788899999988765 689
Q ss_pred EEEeCCCCceeeeecC-CCCCeEEEEEecCCCEEEEEECC------CcEEEEECCCCeeEEEecc---------cC----
Q 005096 211 KYWQNNMNNVKANKSA-HKESVRDLSFCRTDLKFCSCSDD------TTVKVWDFARCQEERSLTG---------HG---- 270 (715)
Q Consensus 211 ~iwd~~~~~~~~~~~~-h~~~I~~l~~spd~~~Las~s~D------g~V~iwdl~~~~~~~~l~~---------~~---- 270 (715)
.+||..+..-...-.. ....-...+...|+++++.++.+ ..+.+||..+.+-...-.. +.
T Consensus 101 ~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~ 180 (387)
T d1k3ia3 101 SLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYR 180 (387)
T ss_dssp EEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGT
T ss_pred eEecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCceeecCCCcccccccccccceee
Confidence 9999887654332211 11223456667789998888753 4689999977653321110 00
Q ss_pred -CceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEec--cC------CCceEEEEE-cCCCCEEEEEECCC------
Q 005096 271 -WDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFH--GH------KNMVLCVKW-NQNGNWVLTASKDQ------ 334 (715)
Q Consensus 271 -~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~--~~------~~~I~sl~~-spdg~~Lasgs~dg------ 334 (715)
.....+....+++.++.+..++.+.++|..+........ .. ...-.++.+ ..+++.++.|+...
T Consensus 181 ~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~GG~~~~~~~~~ 260 (387)
T d1k3ia3 181 SDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDA 260 (387)
T ss_dssp TTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBC
T ss_pred ccceeEEEEeCCCCEEEecCcCCcEEecCcccCcEeeccccccCcccCcccccccEEEeeccCCceEEEEeccCCCCCcc
Confidence 001112233467777777777777777777654322211 00 011122333 23566677665321
Q ss_pred --eEEEEECCC---CeEEEEeec---CCCCeEEEEEccCCCCEEEEEeCC-----------CcEEEEEcCCCCceEEEee
Q 005096 335 --IIKLYDIRA---MKELESFRG---HRKDVTALAWHPFHEEYFVSGSLD-----------GSIFHWLVGHETPQVEIHN 395 (715)
Q Consensus 335 --~I~iwDl~t---~~~~~~~~~---h~~~V~~l~~sp~~~~~l~sgs~D-----------G~I~iwd~~~~~~~~~~~~ 395 (715)
...+.++.. ......... ....-.+....+ +++++++|+.+ .++.+||..+..- ....
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~-dg~i~v~GG~~~~~~~~~~~~~~~ve~Ydp~~~~W--~~~~ 337 (387)
T d1k3ia3 261 TTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLP-DGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTF--YKQN 337 (387)
T ss_dssp CCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECT-TSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEE--EECC
T ss_pred cceeecccccccccCCCceeeccccccccccceeeecc-CCeEEEECCcccCccCCCCcEeceEEEEECCCCeE--EECC
Confidence 333444332 111111111 112223444555 67888888743 1467888765532 2211
Q ss_pred cc-CCC--EEEEEEcCCCCEEEEEEC
Q 005096 396 VH-DNT--VWDLAWHPIGYLLCSGSN 418 (715)
Q Consensus 396 ~h-~~~--V~~l~~spdg~~L~sgs~ 418 (715)
.. ... =....+.+||++|+.|+.
T Consensus 338 ~~~~~R~~Hs~a~l~~dG~v~v~GG~ 363 (387)
T d1k3ia3 338 PNSIVRVYHSISLLLPDGRVFNGGGG 363 (387)
T ss_dssp CCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred CCCCcccceEEEEECCCCEEEEEeCC
Confidence 11 111 122345688999888874
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.17 E-value=0.00091 Score=68.93 Aligned_cols=224 Identities=10% Similarity=0.082 Sum_probs=136.5
Q ss_pred EEEEcC---CCCEEEEEe-CCCcEEEEeCCCCceeeeecC-CCCCeEEEEEec--CCCEEEEEECC--------------
Q 005096 191 SMVWSH---NDNWMVSGD-DGGAIKYWQNNMNNVKANKSA-HKESVRDLSFCR--TDLKFCSCSDD-------------- 249 (715)
Q Consensus 191 ~l~~sp---dg~~L~tgs-~dg~I~iwd~~~~~~~~~~~~-h~~~I~~l~~sp--d~~~Las~s~D-------------- 249 (715)
.+.+.. ||++|++.+ .+.+|.+.|+++.+....+.. ....+..++... +..+++..+.+
T Consensus 89 ~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~ 168 (459)
T d1fwxa2 89 HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDV 168 (459)
T ss_dssp EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCG
T ss_pred cccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccch
Confidence 445543 688887765 578999999999887665433 344566666654 45667766653
Q ss_pred ----CcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCC---------------cEEEEE------------
Q 005096 250 ----TTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDS---------------LVKLWD------------ 298 (715)
Q Consensus 250 ----g~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg---------------~I~iwD------------ 298 (715)
+.+.++|.++.+....+.. ......++++++|+++++.+.+. .+.+++
T Consensus 169 ~~y~~~~t~ID~~tm~V~~QV~V-~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk 247 (459)
T d1fwxa2 169 ANYVNVFTAVDADKWEVAWQVLV-SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGD 247 (459)
T ss_dssp G-EEEEEEEEETTTTEEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTC
T ss_pred hhcceEEEEEecCCceEEEEeee-CCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCC
Confidence 2367889988887776653 34577899999999998887542 133333
Q ss_pred -----------CCC--C-ceeEEeccCCCceEEEEEcCCCCEEEEEE-CCCeEEEEECCCCeEEE-----------Eeec
Q 005096 299 -----------AKS--G-RELCSFHGHKNMVLCVKWNQNGNWVLTAS-KDQIIKLYDIRAMKELE-----------SFRG 352 (715)
Q Consensus 299 -----------l~s--~-~~~~~~~~~~~~I~sl~~spdg~~Lasgs-~dg~I~iwDl~t~~~~~-----------~~~~ 352 (715)
.++ + ..++.+. -......+.++|||+++++++ .+.+|.|+|+++...+. .-..
T Consensus 248 ~~eingV~VVD~~~~~~~~v~~yIP-VpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~e 326 (459)
T d1fwxa2 248 YQELNGVKVVDGRKEASSLFTRYIP-IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE 326 (459)
T ss_dssp SEEETTEEEEECSGG--CSSEEEEE-EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCB
T ss_pred cEEeCCceeecccccCCcceeEEEe-cCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecc
Confidence 221 1 1111111 122345688999999988776 67899999997532211 1111
Q ss_pred CCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCC---------CceEEEeeccCCCEEEEE------EcCCCCEEEEEE
Q 005096 353 HRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHE---------TPQVEIHNVHDNTVWDLA------WHPIGYLLCSGS 417 (715)
Q Consensus 353 h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~---------~~~~~~~~~h~~~V~~l~------~spdg~~L~sgs 417 (715)
..-.-...+|+. .++...+.--|..|.-|++... ..++.....|- .+-.+. ..+||++|++..
T Consensus 327 lglgPLht~fd~-~g~aytslfids~v~kw~~~~~~~~~~~~~~~~v~~k~~v~y-~~gh~~~~~g~t~~~dgk~l~~~n 404 (459)
T d1fwxa2 327 LGLGPLHTAFDG-RGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHY-QPGHLKTVMGETLDATNDWLVCLS 404 (459)
T ss_dssp CCSCEEEEEECT-TSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSS-CEEEEEETTTTSTTCCSSEEEEEE
T ss_pred cCcCccccccCC-CceEEEEeeccceEEEEecchhhhhhccccCCcceecccccc-CCCCCccCcCCcCCCCCCEEEEec
Confidence 223345567765 4555666668999999998422 22222222222 222222 356889988876
Q ss_pred C
Q 005096 418 N 418 (715)
Q Consensus 418 ~ 418 (715)
.
T Consensus 405 k 405 (459)
T d1fwxa2 405 K 405 (459)
T ss_dssp S
T ss_pred c
Confidence 3
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.09 E-value=0.0014 Score=69.03 Aligned_cols=247 Identities=12% Similarity=0.057 Sum_probs=136.1
Q ss_pred CCCccEEEEEEcCCCCEEEEEe-CC----CeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCC---------
Q 005096 142 KNRCSINRVLWTPTGRRLITGS-QS----GEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDG--------- 207 (715)
Q Consensus 142 ~H~~~I~~l~~spdg~~Latgs-~d----g~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~d--------- 207 (715)
++.-.+..+++|||+++||.+- .+ ..|+++|+.+++.+..... ......++|+.|++.|+....+
T Consensus 122 ~~~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~-~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~ 200 (430)
T d1qfma1 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE-RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGT 200 (430)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE-EECSCCEEECTTSSEEEEEECCCCSSCCSSS
T ss_pred cccceecceEecCCCCEEEEEeccccCchheeEEeccCcceecccccc-cccccceEEcCCCCEEEEEEeccccCccccc
Confidence 3444566778999999998553 23 3699999999987653221 1122468999999988654322
Q ss_pred -------CcEEEEeCCCCce--eeeecC--CCCCeEEEEEecCCCEEEEEEC---CCc--EEEEECCCCe--------eE
Q 005096 208 -------GAIKYWQNNMNNV--KANKSA--HKESVRDLSFCRTDLKFCSCSD---DTT--VKVWDFARCQ--------EE 263 (715)
Q Consensus 208 -------g~I~iwd~~~~~~--~~~~~~--h~~~I~~l~~spd~~~Las~s~---Dg~--V~iwdl~~~~--------~~ 263 (715)
..|.+|.+.+... +..+.. ....+..+..+.++++++.... +.. +.+.|+.... ..
T Consensus 201 ~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 280 (430)
T d1qfma1 201 ETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWV 280 (430)
T ss_dssp CCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCE
T ss_pred ccccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCccccccccccee
Confidence 2477777766422 222332 2335667778889998765432 233 4445543221 11
Q ss_pred EEecccCCceEEEEEcCCCCEEEEEeC---CCcEEEEECCCCce--eEE-eccCCCceEEEEEcCCCCEEEEEE-CCC--
Q 005096 264 RSLTGHGWDVKSVDWHPTKSLLVSGGK---DSLVKLWDAKSGRE--LCS-FHGHKNMVLCVKWNQNGNWVLTAS-KDQ-- 334 (715)
Q Consensus 264 ~~l~~~~~~I~si~~spdg~~L~sgs~---Dg~I~iwDl~s~~~--~~~-~~~~~~~I~sl~~spdg~~Lasgs-~dg-- 334 (715)
..+......+.-+... ++.+++.... ++.|...++.+... ... +..+...+..-.++-.+++|+... .++
T Consensus 281 ~~~~~~~~~~~~~~~~-~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lvl~~~~~~~~ 359 (430)
T d1qfma1 281 KLIDNFEGEYDYVTNE-GTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKN 359 (430)
T ss_dssp EEECSSSSCEEEEEEE-TTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEE
T ss_pred EeecccccceEEEecC-CceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeEEEEECCEEEEEEEcCCEe
Confidence 2222222333333322 2333333332 35677777765422 122 333444444334444455666554 454
Q ss_pred eEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeC---CCcEEEEEcCCCCce
Q 005096 335 IIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSL---DGSIFHWLVGHETPQ 390 (715)
Q Consensus 335 ~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~---DG~I~iwd~~~~~~~ 390 (715)
.|+++++.+++....+......|..+.....+..++++.+. =.+++.||+.++...
T Consensus 360 ~l~v~~~~~~~~~~~~~~~~~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~~~ 418 (430)
T d1qfma1 360 TLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEELE 418 (430)
T ss_dssp EEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSSCC
T ss_pred EEEEEECCCCcEEEecCCCCceEeeccCCCCCCEEEEEEcCCCCCCeEEEEECCCCCcc
Confidence 68899998887766555455556655555533444444332 256888888776543
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=98.08 E-value=0.00038 Score=76.44 Aligned_cols=189 Identities=10% Similarity=0.082 Sum_probs=114.7
Q ss_pred EEEEEe-CCCeEEEEeC-CCCceEEEEeccCC-----------CEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeee
Q 005096 158 RLITGS-QSGEFTLWNG-QSFNFEMILQAHDH-----------AIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANK 224 (715)
Q Consensus 158 ~Latgs-~dg~I~Iwd~-~~~~~~~~l~~h~~-----------~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~ 224 (715)
.|++++ .++.|...|. ++++.+-++..... .-..+++. +..|+.++.|+.|.-.|.++++++...
T Consensus 64 ~vyv~t~~~~~v~Alda~~tG~~~W~~~~~~~~~~~~~~~~~~~~rg~a~~--~~~i~~~~~~g~l~alda~tG~~~w~~ 141 (571)
T d2ad6a1 64 MMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYG--AGQIVKKQANGHLLALDAKTGKINWEV 141 (571)
T ss_dssp EEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred EEEEecCCCCeEEEEeCCCCCceEEEecCCCCcccccccccCcCCCcceee--CCeEEEEeCCCcEEeeehhhhhhhccc
Confidence 455554 4677888886 46888776642110 00123443 456778889999999999999876655
Q ss_pred cCCC----CCeEEEEEecCCCEEEEEE------CCCcEEEEECCCCeeEEEecccC------------------------
Q 005096 225 SAHK----ESVRDLSFCRTDLKFCSCS------DDTTVKVWDFARCQEERSLTGHG------------------------ 270 (715)
Q Consensus 225 ~~h~----~~I~~l~~spd~~~Las~s------~Dg~V~iwdl~~~~~~~~l~~~~------------------------ 270 (715)
.... ..++.--...++ .++++. .+|.|+-+|+++++.+-.+....
T Consensus 142 ~~~~~~~~~~~t~~p~v~~~-~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (571)
T d2ad6a1 142 EVCDPKVGSTLTQAPFVAKD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLG 220 (571)
T ss_dssp ECCCGGGTCBCCSCCEEETT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHH
T ss_pred cccccccccceeecCeEeCC-eEEEeeccccccccCcEEEEECCCCcEEEEEeccCCcccccccccccccccccCccccc
Confidence 3221 111111111233 344444 36789999999999887653211
Q ss_pred -------------Cce-EEEEEcCCCCEEEEEeC----------------CCcEEEEECCCCceeEEeccCCCc------
Q 005096 271 -------------WDV-KSVDWHPTKSLLVSGGK----------------DSLVKLWDAKSGRELCSFHGHKNM------ 314 (715)
Q Consensus 271 -------------~~I-~si~~spdg~~L~sgs~----------------Dg~I~iwDl~s~~~~~~~~~~~~~------ 314 (715)
..+ ...+++++..+++.+.. ...|.-.|+++++.+..+......
T Consensus 221 ~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg~~~p~~~~~r~g~n~~s~svvAld~~TG~~~W~~q~~~~D~Wd~D~ 300 (571)
T d2ad6a1 221 TKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAG 300 (571)
T ss_dssp HHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCC
T ss_pred ccccCCcccccCCCccccccccchhcCeeeeecccccCccccccccccccccceeeeeccchhheecccccCcccccccc
Confidence 111 23466667776666544 245778899999988877632221
Q ss_pred ---eEEEEEcCCCC---EEEEEECCCeEEEEECCCCeEEEE
Q 005096 315 ---VLCVKWNQNGN---WVLTASKDQIIKLYDIRAMKELES 349 (715)
Q Consensus 315 ---I~sl~~spdg~---~Lasgs~dg~I~iwDl~t~~~~~~ 349 (715)
.....+..+++ .++.++.+|.+.++|.++++.+..
T Consensus 301 ~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~i~~ 341 (571)
T d2ad6a1 301 VNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVA 341 (571)
T ss_dssp CCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEE
T ss_pred ccccceeeeeccCccccceeeccccceEEEEecCCCcEeee
Confidence 11122222443 567788999999999999998754
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=98.05 E-value=0.00058 Score=75.24 Aligned_cols=195 Identities=10% Similarity=0.094 Sum_probs=116.3
Q ss_pred CCCEEEEEeCCCeEEEEeC-CCCceEEEEeccCC-----------CEEEEEEcCC----CCEEEEEeCCCcEEEEeCCCC
Q 005096 155 TGRRLITGSQSGEFTLWNG-QSFNFEMILQAHDH-----------AIRSMVWSHN----DNWMVSGDDGGAIKYWQNNMN 218 (715)
Q Consensus 155 dg~~Latgs~dg~I~Iwd~-~~~~~~~~l~~h~~-----------~V~~l~~spd----g~~L~tgs~dg~I~iwd~~~~ 218 (715)
+|.++++++.++.|...|. ++++.+-.+..... .-+.+++..+ ..+|+.++.|+.|.-.|.+++
T Consensus 62 ~g~ly~~t~~~~~v~a~d~~~tG~~~W~~~~~~~~~~~~~~~~~~~~RGv~~~~~~~~~~~~v~~~t~dg~l~Alda~tG 141 (596)
T d1w6sa_ 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG 141 (596)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred CCEEEEeeCCCCcEEEEeCCCCCCEEEEecCCCCcccccccccccccceeEEecCCCCCceEEEEEeCCCCeEeeccccC
Confidence 3433333444566777775 56777766542110 1123444332 347888999999999999999
Q ss_pred ceeeeecCCCC----CeEEEEEecCCCEEEEEEC------CCcEEEEECCCCeeEEEecccC------------------
Q 005096 219 NVKANKSAHKE----SVRDLSFCRTDLKFCSCSD------DTTVKVWDFARCQEERSLTGHG------------------ 270 (715)
Q Consensus 219 ~~~~~~~~h~~----~I~~l~~spd~~~Las~s~------Dg~V~iwdl~~~~~~~~l~~~~------------------ 270 (715)
+++..+..... .++.--.. .+..++++.. .|.|+-+|+++++.+-.+....
T Consensus 142 ~~~w~~~~~d~~~~~~~t~~P~v-~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~ 220 (596)
T d1w6sa_ 142 ETVWKVENSDIKVGSTLTIAPYV-VKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHY 220 (596)
T ss_dssp CEEEEEECCCGGGTCBCCSCCEE-ETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGG
T ss_pred ceeccccccccccccccccCCcE-ECCeEEEeeccccccccCceEEEECCCCcEEEEeeccCCccccccccccccccccc
Confidence 88776642211 11111011 1334555442 4889999999999987653210
Q ss_pred -------------------C-ceEEEEEcCCCCEEEEEeCC----------------CcEEEEECCCCceeEEecc--CC
Q 005096 271 -------------------W-DVKSVDWHPTKSLLVSGGKD----------------SLVKLWDAKSGRELCSFHG--HK 312 (715)
Q Consensus 271 -------------------~-~I~si~~spdg~~L~sgs~D----------------g~I~iwDl~s~~~~~~~~~--~~ 312 (715)
. .-..++++++.++++.+..+ ..|.-.|+++++.+..+.. |+
T Consensus 221 g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg~~~p~~~~~r~g~n~ys~sivAlD~~TG~~~W~~Q~~~~D 300 (596)
T d1w6sa_ 221 GQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHD 300 (596)
T ss_dssp CCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTC
T ss_pred cccccccccCCCCceecCCCccccccccccCCCeeecccccccccccccccccccccccccccccccccccccccceecc
Confidence 0 11245666677777666432 3477889999998887653 21
Q ss_pred C-------ceEEEEE-cCCC---CEEEEEECCCeEEEEECCCCeEEEEe
Q 005096 313 N-------MVLCVKW-NQNG---NWVLTASKDQIIKLYDIRAMKELESF 350 (715)
Q Consensus 313 ~-------~I~sl~~-spdg---~~Lasgs~dg~I~iwDl~t~~~~~~~ 350 (715)
. .+..+.. ..++ +.++....+|.+.++|.++++.+...
T Consensus 301 ~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~tG~~i~~~ 349 (596)
T d1w6sa_ 301 EWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSAN 349 (596)
T ss_dssp SSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred ccCCccccceeeeeccccccccccceeccccccceeeecCCCCceeeec
Confidence 1 1222222 2344 36778889999999999999887543
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=98.04 E-value=0.00019 Score=78.82 Aligned_cols=271 Identities=11% Similarity=0.082 Sum_probs=160.9
Q ss_pred CEEEEEeCCCeEEEEeCCCCceEEEEeccCC----------CE-EEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeec
Q 005096 157 RRLITGSQSGEFTLWNGQSFNFEMILQAHDH----------AI-RSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKS 225 (715)
Q Consensus 157 ~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~----------~V-~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~ 225 (715)
..|++++.++.|.-.|.++++.+-++..... .+ ..++. .+..|+.++.|+.|.-.|..+++++....
T Consensus 67 g~vyv~t~~~~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~g~l~Alda~tG~~~w~~~ 144 (560)
T d1kv9a2 67 GVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWSQQ 144 (560)
T ss_dssp TEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred CEEEEECCCCeEEEEeCCCCCEEEEECCCCCccccccccccccccCcce--eCCeEEEEeCCCEEEEEECCCCcEEeccC
Confidence 3677788889999999999998877642110 00 11222 14567888889999999999998876654
Q ss_pred CCCC----CeEEEEEecCCCEEEEEEC------CCcEEEEECCCCeeEEEeccc--------------------------
Q 005096 226 AHKE----SVRDLSFCRTDLKFCSCSD------DTTVKVWDFARCQEERSLTGH-------------------------- 269 (715)
Q Consensus 226 ~h~~----~I~~l~~spd~~~Las~s~------Dg~V~iwdl~~~~~~~~l~~~-------------------------- 269 (715)
.... .++..-..-++ .++++.. .|.|+-+|.++++.+-.+...
T Consensus 145 ~~~~~~~~~~~~~p~v~~~-~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (560)
T d1kv9a2 145 TTDPAKPYSITGAPRVVKG-KVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYW 223 (560)
T ss_dssp CSCTTSSCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHH
T ss_pred ccCcccceeeeeeeeeecC-cccccccceeccccceEEEEECCCceEEeeeeeccccccCCccccccccccccccccccc
Confidence 3221 11111111123 3333322 367999999999988776421
Q ss_pred ----CCce-EEEEEcCCCCEEEEEeC-------------------CCcEEEEECCCCceeEEeccCCCce---------E
Q 005096 270 ----GWDV-KSVDWHPTKSLLVSGGK-------------------DSLVKLWDAKSGRELCSFHGHKNMV---------L 316 (715)
Q Consensus 270 ----~~~I-~si~~spdg~~L~sgs~-------------------Dg~I~iwDl~s~~~~~~~~~~~~~I---------~ 316 (715)
...+ ..++++++.++++.+.. ...|.-.|+++++.+..+......+ .
T Consensus 224 ~~~~G~~~W~~~s~D~~~~l~y~~tgn~~~~~~~~~~~~~g~n~~s~sivAld~~tG~~~W~~Q~~~~D~wd~d~~~~~~ 303 (560)
T d1kv9a2 224 KLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQIT 303 (560)
T ss_dssp HHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEE
T ss_pred cccCCCCcccccccccccCeeeecCCCCcccccccccccCCccccceeeEEecCCccceeEEEeccccccccccccceee
Confidence 0111 23566677776665432 2347777999999877665322211 1
Q ss_pred EEEEcCCC---CEEEEEECCCeEEEEECCCCeEEEEeecCCCC------------------------------------e
Q 005096 317 CVKWNQNG---NWVLTASKDQIIKLYDIRAMKELESFRGHRKD------------------------------------V 357 (715)
Q Consensus 317 sl~~spdg---~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~------------------------------------V 357 (715)
-+.+..++ +.++.+..+|.+.++|.++++.+......... -
T Consensus 304 l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~Gg~~w 383 (560)
T d1kv9a2 304 LAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNW 383 (560)
T ss_dssp EEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCS
T ss_pred eeeeecCCceeeeeeecCccceEEEEecCCCcccccccccccccccccChhhccccccccccccccceeeeecccccccc
Confidence 12222233 35677889999999999999987654321100 0
Q ss_pred EEEEEccCCCCEEEEEeC------------------------------------CCcEEEEEcCCCCceEEEeeccCCCE
Q 005096 358 TALAWHPFHEEYFVSGSL------------------------------------DGSIFHWLVGHETPQVEIHNVHDNTV 401 (715)
Q Consensus 358 ~~l~~sp~~~~~l~sgs~------------------------------------DG~I~iwd~~~~~~~~~~~~~h~~~V 401 (715)
...+++| +..+++.... .|.|.-||+.+++...+..... ..
T Consensus 384 ~~~a~dp-~~~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~G~l~A~D~~tGk~~W~~~~~~--~~ 460 (560)
T d1kv9a2 384 HSMSFNP-GTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPT--HW 460 (560)
T ss_dssp SCCEEET-TTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESS--SC
T ss_pred ccccccC-CCCeeecccccccceeeccccccccccccccccCcccccCCCCcccccceEEEeCCCCeEeeeccCCC--CC
Confidence 1334555 3333333221 2457778888887776655432 22
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEecCCCCCc
Q 005096 402 WDLAWHPIGYLLCSGSNDHTTKFWCRNRPGDT 433 (715)
Q Consensus 402 ~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~~~ 433 (715)
.+-.++-.+.+|++++.||.++.+|.+..+..
T Consensus 461 ~gg~l~TagglVF~G~~dg~l~A~Da~tGe~L 492 (560)
T d1kv9a2 461 NGGTLSTAGNLVFQGTAAGQMHAYSADKGEAL 492 (560)
T ss_dssp CCCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred CCceeEECCCEEEEECCCCcEEEEECCCCcEe
Confidence 22223335678889999999999999764443
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.03 E-value=0.0078 Score=58.78 Aligned_cols=251 Identities=11% Similarity=0.087 Sum_probs=159.9
Q ss_pred CCeEEEEeCCCCceE-EEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEE
Q 005096 165 SGEFTLWNGQSFNFE-MILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKF 243 (715)
Q Consensus 165 dg~I~Iwd~~~~~~~-~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~L 243 (715)
...|.|.|+.+.... +.-..-+ +...+|..+.|+.-+ ..++.|+|+++.+.+....- .+.|.--.|..+ +.|
T Consensus 44 ~~~VvIidl~n~~~~~Rrpi~Ad----sAIMhP~~~IiALra-g~~LQiFnletK~klks~~~-~e~VvfWkWis~-~~L 116 (327)
T d1utca2 44 QAQVVIIDMNDPSNPIRRPISAD----SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISL-NTV 116 (327)
T ss_dssp EEEEEEEETTSTTSCEEEECCCS----EEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEEC-SSCCCEEEESSS-SEE
T ss_pred CceEEEEECCCCCcceecccchh----hhhcCCCCcEEEEec-CCeEEEEehhHhhhhceEEc-CCCcEEEEecCC-CEE
Confidence 347889998775533 2222222 445678888887665 56899999999988777654 446666666644 455
Q ss_pred EEEECCCcEEEEECCC-CeeEEEeccc----CCceEEEEEcCCCCEEEEEe---C----CCcEEEEECCCCceeEEeccC
Q 005096 244 CSCSDDTTVKVWDFAR-CQEERSLTGH----GWDVKSVDWHPTKSLLVSGG---K----DSLVKLWDAKSGRELCSFHGH 311 (715)
Q Consensus 244 as~s~Dg~V~iwdl~~-~~~~~~l~~~----~~~I~si~~spdg~~L~sgs---~----Dg~I~iwDl~s~~~~~~~~~~ 311 (715)
+..+ +..|+.|+++. ....+.+..| ...|.....+++.++++..+ . .|.+.+|..+. +.-..+++|
T Consensus 117 ~lVT-~taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er-~~sQ~ieGh 194 (327)
T d1utca2 117 ALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGH 194 (327)
T ss_dssp EEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTT-TEEEEECCS
T ss_pred EEEc-CCceEEEcccCCCCchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEecc-CcCccccce
Confidence 5554 44799999953 2355555544 34677888899999776543 2 36788999874 445667777
Q ss_pred CCceEEEEEcCCC---CEEEEEE---CCCeEEEEECCCCe---E-----EEEe-e---cCCCCeEEEEEccCCCCEEEEE
Q 005096 312 KNMVLCVKWNQNG---NWVLTAS---KDQIIKLYDIRAMK---E-----LESF-R---GHRKDVTALAWHPFHEEYFVSG 373 (715)
Q Consensus 312 ~~~I~sl~~spdg---~~Lasgs---~dg~I~iwDl~t~~---~-----~~~~-~---~h~~~V~~l~~sp~~~~~l~sg 373 (715)
......+.+.-+. .+++.+. ..++++|.++.+.. . ...+ - ...+--.++.++. ...++..-
T Consensus 195 aa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~-kygiiyvi 273 (327)
T d1utca2 195 AASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISE-KHDVVFLI 273 (327)
T ss_dssp EEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEET-TTTEEEEE
T ss_pred eeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeec-cCCEEEEE
Confidence 6655555543221 2333332 23688888886521 1 1111 1 1234456778887 67788888
Q ss_pred eCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEe
Q 005096 374 SLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWC 426 (715)
Q Consensus 374 s~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWd 426 (715)
+.-|.|++||+.++..+..-.. ..+.|...+-+.+..=+++...+|.|..-.
T Consensus 274 TK~G~i~lyDleTgt~i~~nRI-s~~~iF~~a~~~~~~Gi~~VNr~GqVl~vs 325 (327)
T d1utca2 274 TKYGYIHLYDLETGTCIYMNRI-SGETIFVTAPHEATAGIIGVNRKGQVLSVC 325 (327)
T ss_dssp ETTSEEEEEETTTCCEEEEEEC-CSSCEEEEEEETTTTEEEEEETTSEEEEEE
T ss_pred ecCcEEEEEEcccccEEEEeec-CCCceEEeccCCCCceEEEECCCCeEEEEE
Confidence 9999999999999987766543 355666555555555566667788775543
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.02 E-value=0.0037 Score=61.12 Aligned_cols=227 Identities=10% Similarity=0.110 Sum_probs=147.2
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC-ceeeeecCC-
Q 005096 150 VLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN-NVKANKSAH- 227 (715)
Q Consensus 150 l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~-~~~~~~~~h- 227 (715)
.-.+|..+.||.-+ ..++.|+|+++.+.++.+...+ .|.-=.|..+ +.|+..+ +..|+-|+++.. .....+..|
T Consensus 68 AIMhP~~~IiALra-g~~LQiFnletK~klks~~~~e-~VvfWkWis~-~~L~lVT-~taVYHW~~~g~s~P~k~fdR~~ 143 (327)
T d1utca2 68 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISL-NTVALVT-DNAVYHWSMEGESQPVKMFDRHS 143 (327)
T ss_dssp EEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSS-CCCEEEESSS-SEEEEEC-SSEEEEEESSSSCCCEEEEECCG
T ss_pred hhcCCCCcEEEEec-CCeEEEEehhHhhhhceEEcCC-CcEEEEecCC-CEEEEEc-CCceEEEcccCCCCchhhhhhcc
Confidence 34567777776655 4579999999999999888655 4445567644 4555444 357999998653 233333332
Q ss_pred ---CCCeEEEEEecCCCEEEEEE---C----CCcEEEEECCCCeeEEEecccCCceEEEEEcCCC---CEEEEEeC---C
Q 005096 228 ---KESVRDLSFCRTDLKFCSCS---D----DTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTK---SLLVSGGK---D 291 (715)
Q Consensus 228 ---~~~I~~l~~spd~~~Las~s---~----Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg---~~L~sgs~---D 291 (715)
...|.....+++.++++..+ . .|.+.+|..+.. ....+++|......+.+.-+. ++|+.+.. .
T Consensus 144 ~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~-~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~ 222 (327)
T d1utca2 144 SLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAG 222 (327)
T ss_dssp GGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT-EEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTE
T ss_pred cccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccC-cCccccceeeeeEEEEcCCCCCCceEEEEEECCCCC
Confidence 34577777788888876543 2 367889988664 556777776665555554222 23443322 3
Q ss_pred CcEEEEECCCCc---e-----eEEe----ccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEE
Q 005096 292 SLVKLWDAKSGR---E-----LCSF----HGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTA 359 (715)
Q Consensus 292 g~I~iwDl~s~~---~-----~~~~----~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~ 359 (715)
++|.|.++.... . ...+ +...+--.++..+..-..++..+.-|.|.+||++++.++..-+...+.|..
T Consensus 223 ~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~i~lyDleTgt~i~~nRIs~~~iF~ 302 (327)
T d1utca2 223 GKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFV 302 (327)
T ss_dssp EEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEE
T ss_pred cEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecCcEEEEEEcccccEEEEeecCCCceEE
Confidence 578888886521 1 1111 112344567888888889999999999999999999999988877777775
Q ss_pred EEEccCCCCEEEEEeCCCcEEEE
Q 005096 360 LAWHPFHEEYFVSGSLDGSIFHW 382 (715)
Q Consensus 360 l~~sp~~~~~l~sgs~DG~I~iw 382 (715)
.+-+. ...=|++...+|.|..-
T Consensus 303 ~a~~~-~~~Gi~~VNr~GqVl~v 324 (327)
T d1utca2 303 TAPHE-ATAGIIGVNRKGQVLSV 324 (327)
T ss_dssp EEEET-TTTEEEEEETTSEEEEE
T ss_pred eccCC-CCceEEEECCCCeEEEE
Confidence 55554 33444555567766543
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=97.95 E-value=0.00028 Score=77.58 Aligned_cols=191 Identities=9% Similarity=0.037 Sum_probs=114.6
Q ss_pred EEEEEeCCCeEEEEeCCCCceEEEEeccC----------CCE-EEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeecC
Q 005096 158 RLITGSQSGEFTLWNGQSFNFEMILQAHD----------HAI-RSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSA 226 (715)
Q Consensus 158 ~Latgs~dg~I~Iwd~~~~~~~~~l~~h~----------~~V-~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~~ 226 (715)
.|++++.++.|.-+|.++++.+-.+.... ..+ ..+.+. +..++.++.|+.+.-.|.++++.+.....
T Consensus 79 ~vyv~t~~~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~v~~~t~~g~l~alda~tG~~~W~~~~ 156 (573)
T d1kb0a2 79 IMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALW--KGKVYVGAWDGRLIALDAATGKEVWHQNT 156 (573)
T ss_dssp EEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEET
T ss_pred EEEEECCCCeEEEEeCCCCCeEEEeCCCCCcccccccccccccccceEE--CCcEEEEecccceeeeccccccceecccC
Confidence 67778888899999999999887764211 011 122222 34677778889888889999887755432
Q ss_pred CCC---Ce--EEEEEecCCCEEEEEEC------CCcEEEEECCCCeeEEEecccC-------------------------
Q 005096 227 HKE---SV--RDLSFCRTDLKFCSCSD------DTTVKVWDFARCQEERSLTGHG------------------------- 270 (715)
Q Consensus 227 h~~---~I--~~l~~spd~~~Las~s~------Dg~V~iwdl~~~~~~~~l~~~~------------------------- 270 (715)
... .+ +..-...+ ..+++++. .|.|+.+|.++++.+-.+....
T Consensus 157 ~~~~~~~~~~~~~p~v~~-~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~t~~~~~~~ 235 (573)
T d1kb0a2 157 FEGQKGSLTITGAPRVFK-GKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKW 235 (573)
T ss_dssp TTTCCSSCBCCSCCEEET-TEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCH
T ss_pred ccCCcceEEeecceEEEe-ccEEEeeccccccccceEEEEecCCccceeeeeeccccCCCCCCcccccccccccCCCCce
Confidence 211 11 11001112 34444432 4679999999999887653210
Q ss_pred ------Cce-EEEEEcCCCCEEEEEeC-------------------CCcEEEEECCCCceeEEeccCCC---------ce
Q 005096 271 ------WDV-KSVDWHPTKSLLVSGGK-------------------DSLVKLWDAKSGRELCSFHGHKN---------MV 315 (715)
Q Consensus 271 ------~~I-~si~~spdg~~L~sgs~-------------------Dg~I~iwDl~s~~~~~~~~~~~~---------~I 315 (715)
..+ ...+++++..+++.... ...|.-.|+++++....+..... ..
T Consensus 236 ~~~~~G~~vW~~~s~D~~~g~~~~~~g~~~~~~~~~~~~~~g~~~~~~svvAld~~tG~~~W~~q~~~~d~wd~d~~~~~ 315 (573)
T d1kb0a2 236 WEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPM 315 (573)
T ss_dssp HHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCC
T ss_pred eecCCCCcccccceEchhhCeeeeccCCCccccccccccccccccccceEEEecccchheeecccccCccccccccccee
Confidence 111 23556666666654432 12466778888887766543211 11
Q ss_pred EEEEEcCCC---CEEEEEECCCeEEEEECCCCeEEEEee
Q 005096 316 LCVKWNQNG---NWVLTASKDQIIKLYDIRAMKELESFR 351 (715)
Q Consensus 316 ~sl~~spdg---~~Lasgs~dg~I~iwDl~t~~~~~~~~ 351 (715)
.......++ ..++.++.+|.+.++|.++++.+....
T Consensus 316 ~l~~~~~~g~~~~~v~~~~k~G~l~~lDr~tGe~~~~~~ 354 (573)
T d1kb0a2 316 ILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKN 354 (573)
T ss_dssp EEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEE
T ss_pred eecceecCCCceeeeeeccccceeEEecccccccccccc
Confidence 222222233 457778899999999999999876543
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.89 E-value=0.0013 Score=67.73 Aligned_cols=189 Identities=13% Similarity=0.074 Sum_probs=120.7
Q ss_pred CCCEEEEEE-CCCcEEEEECCCCeeEEEecc-cCCceEEEEEcC--CCCEEEEEeCCC------------------cEEE
Q 005096 239 TDLKFCSCS-DDTTVKVWDFARCQEERSLTG-HGWDVKSVDWHP--TKSLLVSGGKDS------------------LVKL 296 (715)
Q Consensus 239 d~~~Las~s-~Dg~V~iwdl~~~~~~~~l~~-~~~~I~si~~sp--dg~~L~sgs~Dg------------------~I~i 296 (715)
||++|++.. .+.+|.+.|+++.+....+.. ....+..+.... +-.++++.+.+. .+.+
T Consensus 98 DGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t~ 177 (459)
T d1fwxa2 98 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA 177 (459)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEEE
T ss_pred ceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEEE
Confidence 678877766 478999999999888665433 344566666654 445777766532 3667
Q ss_pred EECCCCceeEEeccCCCceEEEEEcCCCCEEEEEECCC---------------eEEEEEC--------------------
Q 005096 297 WDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQ---------------IIKLYDI-------------------- 341 (715)
Q Consensus 297 wDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs~dg---------------~I~iwDl-------------------- 341 (715)
+|..+.+....+.. ......+.++++|+|+++.+.+. .|.++++
T Consensus 178 ID~~tm~V~~QV~V-~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eingV~V 256 (459)
T d1fwxa2 178 VDADKWEVAWQVLV-SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKV 256 (459)
T ss_dssp EETTTTEEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEE
T ss_pred EecCCceEEEEeee-CCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCCcee
Confidence 89988887766652 34567899999999999887432 2444443
Q ss_pred ---CCC--eEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCc----------eEEEeeccCCCEEEEEE
Q 005096 342 ---RAM--KELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETP----------QVEIHNVHDNTVWDLAW 406 (715)
Q Consensus 342 ---~t~--~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~----------~~~~~~~h~~~V~~l~~ 406 (715)
++. ..+..+..-......+.++|++..+++++..+.+|.|+|+++-.. .+.......-.-...+|
T Consensus 257 VD~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elglgPLht~f 336 (459)
T d1fwxa2 257 VDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAF 336 (459)
T ss_dssp EECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCSCEEEEEE
T ss_pred ecccccCCcceeEEEecCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecccCcCcccccc
Confidence 210 001111111223456889995555556666788999999963211 11111112334567789
Q ss_pred cCCCCEEEEEECCCeEEEEecC
Q 005096 407 HPIGYLLCSGSNDHTTKFWCRN 428 (715)
Q Consensus 407 spdg~~L~sgs~Dg~I~iWdl~ 428 (715)
+..|....|.-.|..|.-|++.
T Consensus 337 d~~g~aytslfids~v~kw~~~ 358 (459)
T d1fwxa2 337 DGRGNAYTSLFLDSQVVKWNIE 358 (459)
T ss_dssp CTTSEEEEEETTTTEEEEEEHH
T ss_pred CCCceEEEEeeccceEEEEecc
Confidence 8888766777789999999984
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.86 E-value=0.0033 Score=68.84 Aligned_cols=258 Identities=9% Similarity=0.012 Sum_probs=148.5
Q ss_pred CCEEEEEeCCCeEEEEeCCCCceEEEEec--cCCC--E--EEEEEcC--CCCEEEEE-------eCCCcEEEEeCCCCce
Q 005096 156 GRRLITGSQSGEFTLWNGQSFNFEMILQA--HDHA--I--RSMVWSH--NDNWMVSG-------DDGGAIKYWQNNMNNV 220 (715)
Q Consensus 156 g~~Latgs~dg~I~Iwd~~~~~~~~~l~~--h~~~--V--~~l~~sp--dg~~L~tg-------s~dg~I~iwd~~~~~~ 220 (715)
+..|+.++.|+.|.-.|.++++.+-.... +... + .-+.+.. ....++.. +..+.|.-+|.++++.
T Consensus 117 ~~~i~~~t~~~~l~alda~tG~~~W~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~g~~~~~~~~~g~v~a~d~~tG~~ 196 (582)
T d1flga_ 117 GDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEE 196 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCE
T ss_pred CCceEEecCCCeEEEecccccceeeeecccCCCccceeecCceEecCCcEeEEEEEeCccccccccccceEEecCCCCcE
Confidence 45688899999999999999987754332 1100 0 0011111 12333332 1245677778887776
Q ss_pred eeeecCCC----------------------------------------CCe-EEEEEecCCCEEEEEEC-----------
Q 005096 221 KANKSAHK----------------------------------------ESV-RDLSFCRTDLKFCSCSD----------- 248 (715)
Q Consensus 221 ~~~~~~h~----------------------------------------~~I-~~l~~spd~~~Las~s~----------- 248 (715)
+..+.... ..+ ..+++.+...+++.+..
T Consensus 197 ~W~~~~~~~~~~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~~~vy~~tgn~~p~~~~~~~ 276 (582)
T d1flga_ 197 IWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWART 276 (582)
T ss_dssp EEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGS
T ss_pred EEEEeccCCccccccccccccccccccccCCCccccccCCccceecCCCcccccceeccccceEEeccCCcccccccccc
Confidence 65442211 111 23566666666665541
Q ss_pred -------------CCcEEEEECCCCeeEEEecccCCceE-----------EEEEcCCCC---EEEEEeCCCcEEEEECCC
Q 005096 249 -------------DTTVKVWDFARCQEERSLTGHGWDVK-----------SVDWHPTKS---LLVSGGKDSLVKLWDAKS 301 (715)
Q Consensus 249 -------------Dg~V~iwdl~~~~~~~~l~~~~~~I~-----------si~~spdg~---~L~sgs~Dg~I~iwDl~s 301 (715)
...|...|+++++..-.+......+. .+... +++ .++..+.++.++++|.++
T Consensus 277 ~~g~~~~~~dn~ys~SvvAld~~tG~~~W~~q~~~~D~wd~d~~~~p~l~d~~~~-~g~~~~~v~~~~k~g~~~vldr~t 355 (582)
T d1flga_ 277 AKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAK-DGKIVKATAHADRNGFFYVVDRSN 355 (582)
T ss_dssp CTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECS-SSCEEEEEEEECTTSEEEEEETTT
T ss_pred cCCCCcCcccccccceeEEecccchhhhhcccccccccccccccccccccccccc-cccccceeEeecccccEEeecccC
Confidence 23477788888888766653322221 22222 232 566678889999999998
Q ss_pred CceeEEeccCCC---------------------------------------------ceEEEEEcCCCCEEEEEEC----
Q 005096 302 GRELCSFHGHKN---------------------------------------------MVLCVKWNQNGNWVLTASK---- 332 (715)
Q Consensus 302 ~~~~~~~~~~~~---------------------------------------------~I~sl~~spdg~~Lasgs~---- 332 (715)
++.+........ .-...+++++..++++...
T Consensus 356 G~~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~gg~~w~~~a~dp~~g~~yvp~~~~~~ 435 (582)
T d1flga_ 356 GKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKE 435 (582)
T ss_dssp CCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEE
T ss_pred CcccccccccCccccccccccccccceeccccccccccccccccceEEECCCccCCcccccceecCCCCceeeecccccc
Confidence 886643311100 0012244454444443221
Q ss_pred -----------------------------CCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEE
Q 005096 333 -----------------------------DQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWL 383 (715)
Q Consensus 333 -----------------------------dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd 383 (715)
.|.|.-+|+.+++.+.++.......... ++. .+.++++|+.||.++.+|
T Consensus 436 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G~l~AiD~~TG~i~W~~~~~~p~~~g~-lst-agglVF~Gt~dg~l~A~D 513 (582)
T d1flga_ 436 DYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLPLWAGV-LAT-AGNLVFTGTGDGYFKAFD 513 (582)
T ss_dssp EEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESSCCCSCC-EEE-TTTEEEEECTTSEEEEEE
T ss_pred ccccccccccccccccccCccccccccCCCCeEEEEcCCCCcEEeecCCCCCCccce-eEE-cCCeEEEeCCCCeEEEEE
Confidence 2568888999999988877443322211 122 567888899999999999
Q ss_pred cCCCCceEEEeeccCCCEEEEEEcCCCC-EEEEE
Q 005096 384 VGHETPQVEIHNVHDNTVWDLAWHPIGY-LLCSG 416 (715)
Q Consensus 384 ~~~~~~~~~~~~~h~~~V~~l~~spdg~-~L~sg 416 (715)
.++++.+.+........-.-+.|..+|+ +|++.
T Consensus 514 a~TGe~LW~~~~~~~~~~~P~ty~~~G~qYv~i~ 547 (582)
T d1flga_ 514 AKSGKELWKFQTGSGIVSPPITWEQDGEQYLGVT 547 (582)
T ss_dssp TTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred CCCCcEeEEEECCCCccccCEEEEECCEEEEEEE
Confidence 9999999887754333223356666774 45443
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.71 E-value=0.01 Score=64.72 Aligned_cols=272 Identities=11% Similarity=0.021 Sum_probs=155.3
Q ss_pred CEEEEEeCCCeEEEEeCCCCceEEEEeccC--------CCE-EEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeecCC
Q 005096 157 RRLITGSQSGEFTLWNGQSFNFEMILQAHD--------HAI-RSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAH 227 (715)
Q Consensus 157 ~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~--------~~V-~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~~h 227 (715)
..|++++.++.|.-.|.++++.+-++.... ..+ ..+++. +..|+.++.|+.+.-.|.++++.+......
T Consensus 69 g~vy~~t~~~~v~AlDa~TG~~lW~~~~~~~~~~~~~~~~~~rg~a~~--~~~i~~~t~~~~l~alda~tG~~~W~~~~~ 146 (582)
T d1flga_ 69 GVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIY--GDKVFFGTLDASVVALNKNTGKVVWKKKFA 146 (582)
T ss_dssp TEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEE--TTEEEEEETTTEEEEEESSSCCEEEEEECS
T ss_pred CEEEEeCCCCeEEEEeCCCCCeEEEEcCCCCCccccccccccCCceEe--CCceEEecCCCeEEEecccccceeeeeccc
Confidence 467788888999999999999887764221 001 122332 456777888999988899988776543211
Q ss_pred CC------CeEEEEEec--CCCEEEEE-------ECCCcEEEEECCCCeeEEEecccC----------------------
Q 005096 228 KE------SVRDLSFCR--TDLKFCSC-------SDDTTVKVWDFARCQEERSLTGHG---------------------- 270 (715)
Q Consensus 228 ~~------~I~~l~~sp--d~~~Las~-------s~Dg~V~iwdl~~~~~~~~l~~~~---------------------- 270 (715)
.. ...-+.+.. ....++.. +..+.|.-+|.++++.+-.+....
T Consensus 147 ~~~~~~~~~~~p~~~~~~~~~~~~~i~g~~~~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~d~~~~g~~~~~~~ 226 (582)
T d1flga_ 147 DHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSW 226 (582)
T ss_dssp CGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTTS
T ss_pred CCCccceeecCceEecCCcEeEEEEEeCccccccccccceEEecCCCCcEEEEEeccCCccccccccccccccccccccC
Confidence 10 000011111 12333332 234568888888887766543211
Q ss_pred ------------------Cce-EEEEEcCCCCEEEEEeC------------------------CCcEEEEECCCCceeEE
Q 005096 271 ------------------WDV-KSVDWHPTKSLLVSGGK------------------------DSLVKLWDAKSGRELCS 307 (715)
Q Consensus 271 ------------------~~I-~si~~spdg~~L~sgs~------------------------Dg~I~iwDl~s~~~~~~ 307 (715)
..+ ..++++++.++++.+.. ...|.-.|+++++.+..
T Consensus 227 ~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~~~vy~~tgn~~p~~~~~~~~~g~~~~~~dn~ys~SvvAld~~tG~~~W~ 306 (582)
T d1flga_ 227 PDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWF 306 (582)
T ss_dssp CBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEE
T ss_pred CCccccccCCccceecCCCcccccceeccccceEEeccCCcccccccccccCCCCcCcccccccceeEEecccchhhhhc
Confidence 111 23667777777766541 13467779999988877
Q ss_pred ecc--CCCc---------eEEEEEcCCC---CEEEEEECCCeEEEEECCCCeEEEEeecCCC------------------
Q 005096 308 FHG--HKNM---------VLCVKWNQNG---NWVLTASKDQIIKLYDIRAMKELESFRGHRK------------------ 355 (715)
Q Consensus 308 ~~~--~~~~---------I~sl~~spdg---~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~------------------ 355 (715)
+.. |..+ +..+... ++ ..++..+.++.+.++|.++++.+........
T Consensus 307 ~q~~~~D~wd~d~~~~p~l~d~~~~-~g~~~~~v~~~~k~g~~~vldr~tG~~i~~~~~~~~~~~~~~~d~~~~~~~~~~ 385 (582)
T d1flga_ 307 YQHTPNDAWDFSGNNELVLFDYKAK-DGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVERE 385 (582)
T ss_dssp EESSTTCCSCCCCCCCCEEEEEECS-SSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECT
T ss_pred ccccccccccccccccccccccccc-cccccceeEeecccccEEeecccCCcccccccccCccccccccccccccceecc
Confidence 653 2211 1122222 33 2466677899999999999887654321110
Q ss_pred ---------------------------CeEEEEEccCCCCEEEEEeC--------------------------------C
Q 005096 356 ---------------------------DVTALAWHPFHEEYFVSGSL--------------------------------D 376 (715)
Q Consensus 356 ---------------------------~V~~l~~sp~~~~~l~sgs~--------------------------------D 376 (715)
.-...++++..+.+++.... .
T Consensus 386 ~~~~~~~~~~~~~~~~~~~~P~~~gg~~w~~~a~dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 465 (582)
T d1flga_ 386 GQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHV 465 (582)
T ss_dssp TCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCS
T ss_pred ccccccccccccccceEEECCCccCCcccccceecCCCCceeeeccccccccccccccccccccccccCccccccccCCC
Confidence 01122444433333332211 2
Q ss_pred CcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecCCCCCc
Q 005096 377 GSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGDT 433 (715)
Q Consensus 377 G~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~~~~~~ 433 (715)
|.|.-+|+.+++...+..... .+..-..+-.+.+|++++.||.++.||.++.+..
T Consensus 466 G~l~AiD~~TG~i~W~~~~~~--p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~L 520 (582)
T d1flga_ 466 GSLRAMDPVSGKVVWEHKEHL--PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKEL 520 (582)
T ss_dssp EEEEEECTTTCCEEEEEEESS--CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred CeEEEEcCCCCcEEeecCCCC--CCccceeEEcCCeEEEeCCCCeEEEEECCCCcEe
Confidence 457777777777666655432 2222223345778888999999999999665443
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=97.64 E-value=0.005 Score=62.71 Aligned_cols=241 Identities=8% Similarity=0.020 Sum_probs=130.8
Q ss_pred CEEEEEEcCCCCEEEEEeCCC-----------cEEEEeCCCCceeee---ecCCCCCeEEEEEecCCCEEEEEECC-CcE
Q 005096 188 AIRSMVWSHNDNWMVSGDDGG-----------AIKYWQNNMNNVKAN---KSAHKESVRDLSFCRTDLKFCSCSDD-TTV 252 (715)
Q Consensus 188 ~V~~l~~spdg~~L~tgs~dg-----------~I~iwd~~~~~~~~~---~~~h~~~I~~l~~spd~~~Las~s~D-g~V 252 (715)
.+...+...++++++.|+.+. .+.+||..++..... ...+.......++..++++++.++.+ ..+
T Consensus 21 ~~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~ 100 (387)
T d1k3ia3 21 PAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKT 100 (387)
T ss_dssp CSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCE
T ss_pred ccEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcce
Confidence 334444555777777776421 367899988754321 12333344567788899998888665 589
Q ss_pred EEEECCCCeeEEEecc-cCCceEEEEEcCCCCEEEEEeCC------CcEEEEECCCCceeEEecc---------CC----
Q 005096 253 KVWDFARCQEERSLTG-HGWDVKSVDWHPTKSLLVSGGKD------SLVKLWDAKSGRELCSFHG---------HK---- 312 (715)
Q Consensus 253 ~iwdl~~~~~~~~l~~-~~~~I~si~~spdg~~L~sgs~D------g~I~iwDl~s~~~~~~~~~---------~~---- 312 (715)
.+||..+..-...-.. ....-.+.+...|+++++.++.+ ..+.+||..+.+-...-.. +.
T Consensus 101 ~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~ 180 (387)
T d1k3ia3 101 SLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYR 180 (387)
T ss_dssp EEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGT
T ss_pred eEecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCceeecCCCcccccccccccceee
Confidence 9999977654322111 11223456777789998888753 3589999987643211100 00
Q ss_pred -CceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEee--c----C--CCCeEEEEEccCCCCEEEEEeCC-------
Q 005096 313 -NMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFR--G----H--RKDVTALAWHPFHEEYFVSGSLD------- 376 (715)
Q Consensus 313 -~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~--~----h--~~~V~~l~~sp~~~~~l~sgs~D------- 376 (715)
.....+....+++.++.+..++.+.++|..+........ . . ...-.++.+...++++++.|+..
T Consensus 181 ~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~GG~~~~~~~~~ 260 (387)
T d1k3ia3 181 SDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDA 260 (387)
T ss_dssp TTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBC
T ss_pred ccceeEEEEeCCCCEEEecCcCCcEEecCcccCcEeeccccccCcccCcccccccEEEeeccCCceEEEEeccCCCCCcc
Confidence 001112233467777777777788888887765433211 0 1 11122333433356666666532
Q ss_pred -CcEEEEEcCCCCceEEEeec-----cCCCEEEEEEcCCCCEEEEEECCC-----------eEEEEecC
Q 005096 377 -GSIFHWLVGHETPQVEIHNV-----HDNTVWDLAWHPIGYLLCSGSNDH-----------TTKFWCRN 428 (715)
Q Consensus 377 -G~I~iwd~~~~~~~~~~~~~-----h~~~V~~l~~spdg~~L~sgs~Dg-----------~I~iWdl~ 428 (715)
....+.++............ ....-.+....+|++++++|+.+. ++.+||.+
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~dg~i~v~GG~~~~~~~~~~~~~~~ve~Ydp~ 329 (387)
T d1k3ia3 261 TTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPE 329 (387)
T ss_dssp CCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGG
T ss_pred cceeecccccccccCCCceeeccccccccccceeeeccCCeEEEECCcccCccCCCCcEeceEEEEECC
Confidence 13344443322211111110 111123455567899999988542 46677764
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.51 E-value=0.026 Score=58.75 Aligned_cols=241 Identities=8% Similarity=-0.008 Sum_probs=128.8
Q ss_pred CEEEEEEcCCCCEEEEE-eCC----CcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEEEECC-------------
Q 005096 188 AIRSMVWSHNDNWMVSG-DDG----GAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDD------------- 249 (715)
Q Consensus 188 ~V~~l~~spdg~~L~tg-s~d----g~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~D------------- 249 (715)
.+..+++++|+++|+.+ +.+ -.|+++|+++++.+.... .......++|+.|++.|+-...+
T Consensus 126 ~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i-~~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~ 204 (430)
T d1qfma1 126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVL-ERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETST 204 (430)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEE-EEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCC
T ss_pred eecceEecCCCCEEEEEeccccCchheeEEeccCcceeccccc-ccccccceEEcCCCCEEEEEEeccccCccccccccc
Confidence 34566789999988743 333 468999999998654321 12223568999999987755432
Q ss_pred ---CcEEEEECCCCee--EEEeccc--CCceEEEEEcCCCCEEEEEeC---CCc--EEEEECCCCc--------eeEEec
Q 005096 250 ---TTVKVWDFARCQE--ERSLTGH--GWDVKSVDWHPTKSLLVSGGK---DSL--VKLWDAKSGR--------ELCSFH 309 (715)
Q Consensus 250 ---g~V~iwdl~~~~~--~~~l~~~--~~~I~si~~spdg~~L~sgs~---Dg~--I~iwDl~s~~--------~~~~~~ 309 (715)
..|++|.+.+... +..+... ...+..+..+.++++|+.... +.. +.+.|+.... .+..+.
T Consensus 205 ~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 284 (430)
T d1qfma1 205 NLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLID 284 (430)
T ss_dssp CCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEEC
T ss_pred CCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCcccccccccceeEeec
Confidence 2588888866432 2333322 234667788999998765432 233 4444554321 112223
Q ss_pred cCCCceEEEEEcCCCCEEEEEE---CCCeEEEEECCCCeE--EEEee-cCCCCeEEEEEccCCCCEEEEEeCCC--cEEE
Q 005096 310 GHKNMVLCVKWNQNGNWVLTAS---KDQIIKLYDIRAMKE--LESFR-GHRKDVTALAWHPFHEEYFVSGSLDG--SIFH 381 (715)
Q Consensus 310 ~~~~~I~sl~~spdg~~Lasgs---~dg~I~iwDl~t~~~--~~~~~-~h~~~V~~l~~sp~~~~~l~sgs~DG--~I~i 381 (715)
.....+.-+. +.++.+++... .++.|...++.+... ...+. .+...+..-.+...++.+++....++ .|++
T Consensus 285 ~~~~~~~~~~-~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lvl~~~~~~~~~l~v 363 (430)
T d1qfma1 285 NFEGEYDYVT-NEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQL 363 (430)
T ss_dssp SSSSCEEEEE-EETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEE
T ss_pred ccccceEEEe-cCCceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeEEEEECCEEEEEEEcCCEeEEEE
Confidence 2233333332 22333333333 246777777765432 12333 34444543333331334444555665 4788
Q ss_pred EEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECC----CeEEEEecCCCC
Q 005096 382 WLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSND----HTTKFWCRNRPG 431 (715)
Q Consensus 382 wd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~D----g~I~iWdl~~~~ 431 (715)
++...+... .+.....+.|..+....+...|...-.+ .++..||+.+..
T Consensus 364 ~~~~~~~~~-~~~~~~~~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~ 416 (430)
T d1qfma1 364 HDLATGALL-KIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (430)
T ss_dssp EETTTCCEE-EEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EECCCCcEE-EecCCCCceEeeccCCCCCCEEEEEEcCCCCCCeEEEEECCCCC
Confidence 888776543 3333334556666555555443332222 567777775543
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=97.18 E-value=0.063 Score=53.90 Aligned_cols=182 Identities=8% Similarity=0.085 Sum_probs=103.3
Q ss_pred EEEEEcCCCCEEEEEeC------------CCeEEEEeCCCCceEE-EE--ecc-----CCCEEEEEE--cCCCC-EEEEE
Q 005096 148 NRVLWTPTGRRLITGSQ------------SGEFTLWNGQSFNFEM-IL--QAH-----DHAIRSMVW--SHNDN-WMVSG 204 (715)
Q Consensus 148 ~~l~~spdg~~Latgs~------------dg~I~Iwd~~~~~~~~-~l--~~h-----~~~V~~l~~--spdg~-~L~tg 204 (715)
-+|+..+||..+++++. .|.|.++|+++.+... .+ ... .-.-..+.+ ..++. +|++.
T Consensus 38 EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~vv 117 (340)
T d1v04a_ 38 EDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVV 117 (340)
T ss_dssp CEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEEE
T ss_pred ceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEEE
Confidence 35777888876666532 4899999987653322 22 111 112344443 34555 34444
Q ss_pred e---CCCcEEEEeCCCCc--eee--ee-cCCCCCeEEEEEecCCCEEEEEEC---------------CCcEEEEECCCCe
Q 005096 205 D---DGGAIKYWQNNMNN--VKA--NK-SAHKESVRDLSFCRTDLKFCSCSD---------------DTTVKVWDFARCQ 261 (715)
Q Consensus 205 s---~dg~I~iwd~~~~~--~~~--~~-~~h~~~I~~l~~spd~~~Las~s~---------------Dg~V~iwdl~~~~ 261 (715)
. ...+|.||++.... +.. ++ .......++|++..++.+++|-.. -....+|..+..+
T Consensus 118 nH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~ 197 (340)
T d1v04a_ 118 NHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPND 197 (340)
T ss_dssp ECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSC
T ss_pred eccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCCc
Confidence 2 45678888875432 211 11 122345789999989887777321 1233444444433
Q ss_pred eEEEecccCCceEEEEEcCCCCEEEEE-eCCCcEEEEECCCCceeEE--eccCCCceEEEEEcC-CCCEEEEE
Q 005096 262 EERSLTGHGWDVKSVDWHPTKSLLVSG-GKDSLVKLWDAKSGRELCS--FHGHKNMVLCVKWNQ-NGNWVLTA 330 (715)
Q Consensus 262 ~~~~l~~~~~~I~si~~spdg~~L~sg-s~Dg~I~iwDl~s~~~~~~--~~~~~~~I~sl~~sp-dg~~Lasg 330 (715)
.. .+.......+.|++++|+++|+++ +..+.|++|++.....+.. ...-....-.+.+.+ ++.+.+.+
T Consensus 198 ~~-~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lwva~ 269 (340)
T d1v04a_ 198 VR-VVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGC 269 (340)
T ss_dssp EE-EEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEE
T ss_pred eE-EEcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEEEEE
Confidence 32 222234567899999999877665 4567899999875443322 112345567788876 45544444
|
| >d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Acylamino-acid-releasing enzyme, N-terminal donain domain: Acylamino-acid-releasing enzyme, N-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=97.18 E-value=0.056 Score=49.50 Aligned_cols=214 Identities=11% Similarity=0.108 Sum_probs=112.1
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCC-CEEEEE------ECCCcEEEEECCCCeeEEEeccc
Q 005096 197 NDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTD-LKFCSC------SDDTTVKVWDFARCQEERSLTGH 269 (715)
Q Consensus 197 dg~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~-~~Las~------s~Dg~V~iwdl~~~~~~~~l~~~ 269 (715)
++++|+++...|.|.++-+..++.+... +..|.....-..+ .++..+ -.-..|++.++...-+...+...
T Consensus 25 ~d~ll~~~~seG~vni~~l~g~~~vkLt---kePI~~~~~Pk~~ldfi~f~RDV~kGkE~Hai~~~Nlk~~GEE~~i~sp 101 (313)
T d2hu7a1 25 GDKLLVVGFSEGSVNAYLYDGGETVKLN---REPINSVLDPHYGVGRVILVRDVSKGAEQHALFKVNTSRPGEEQRLEAV 101 (313)
T ss_dssp TTEEEEEEEETTEEEEEEESSSSCEECC---SSCCSEECEECTTBSEEEEEEECSTTSCCEEEEEEETTSTTCEEECTTS
T ss_pred CCcEEEEEeccceEEEEEEeCCEEEEEe---cccccCcCCCccCcceEEEEeehhcCcceeeEEEEccCCCCeeeEecCC
Confidence 4557888888999999988777655432 3333322211111 111111 11123455555433333344333
Q ss_pred C-CceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEE--ecc-------CCCceEEEEEc-CCCCEEEEEEC-CCeEE
Q 005096 270 G-WDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCS--FHG-------HKNMVLCVKWN-QNGNWVLTASK-DQIIK 337 (715)
Q Consensus 270 ~-~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~--~~~-------~~~~I~sl~~s-pdg~~Lasgs~-dg~I~ 337 (715)
. -.|.+++.. |.+.+++|+......+|-++.|+.... +-. ..+-|..+.+- .+..-++++.. .|.++
T Consensus 102 k~vRI~S~~yd-dk~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI~~d~I~G~g~~~g~~~sfF~adl~SG~lr 180 (313)
T d2hu7a1 102 KPMRILSGVDT-GEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR 180 (313)
T ss_dssp CSBEEEEEEEC-SSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEEEETTEEEEEEEETTTEEEE
T ss_pred ceEEEEEeeec-CceEEEecccCCceEEEEEeCCceeeeccCCCcceEEeccCCeEEEEeeecCCcceEEEEecccCCEE
Confidence 3 457777776 566888888888899998887754322 211 12223333332 22223444444 56666
Q ss_pred EEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeC-CC--cEEEEEcCCCCceEE------EeeccCCCEEEEEEcC
Q 005096 338 LYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSL-DG--SIFHWLVGHETPQVE------IHNVHDNTVWDLAWHP 408 (715)
Q Consensus 338 iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~-DG--~I~iwd~~~~~~~~~------~~~~h~~~V~~l~~sp 408 (715)
|++-..+. ++.....+ +.+. +++-+ -| ...-+|+++++.... +.....-.|+-+-+.|
T Consensus 181 i~tpkeGS-----------~~~ay~~~-gnKV-~sdyEt~gEsywit~D~~s~~yerve~P~kd~~sy~p~~I~~~~Y~P 247 (313)
T d2hu7a1 181 VFDSGEGS-----------FSSASISP-GMKV-TAGLETAREARLVTVDPRDGSVEDLELPSKDFSSYRPTAITWLGYLP 247 (313)
T ss_dssp EECCSSEE-----------EEEEEECT-TSCE-EEEEEESSCEEEEEECTTTCCEEECCCSSCHHHHHCCSEEEEEEECT
T ss_pred EecCCCCc-----------ccceeEcc-Ccee-eeccCCCCceEEEEEecccCceeeeecCcccceeecceEEEeeeeCC
Confidence 66655544 44444443 2232 22211 11 111335554432211 1111233577788999
Q ss_pred CCCEEEEEECCCeEEEEec
Q 005096 409 IGYLLCSGSNDHTTKFWCR 427 (715)
Q Consensus 409 dg~~L~sgs~Dg~I~iWdl 427 (715)
++++++.+-.||.-++|.-
T Consensus 248 dd~L~iiakrdG~s~lF~n 266 (313)
T d2hu7a1 248 DGRLAVVARREGRSAVFID 266 (313)
T ss_dssp TSCEEEEEEETTEEEEEET
T ss_pred CCcEEEEEecCCchheeec
Confidence 9999999999999999964
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.03 E-value=0.01 Score=57.57 Aligned_cols=215 Identities=13% Similarity=0.039 Sum_probs=97.9
Q ss_pred eEEEEeCCCCceEEE--EeccCCCEEEEEEcCCCCEEEEEeC---------CCcEEEEeCCCCceeeeecCCCCCeEEEE
Q 005096 167 EFTLWNGQSFNFEMI--LQAHDHAIRSMVWSHNDNWMVSGDD---------GGAIKYWQNNMNNVKANKSAHKESVRDLS 235 (715)
Q Consensus 167 ~I~Iwd~~~~~~~~~--l~~h~~~V~~l~~spdg~~L~tgs~---------dg~I~iwd~~~~~~~~~~~~h~~~I~~l~ 235 (715)
.|.+||.++.+-... +.........+.+ ++++++.|+. -..+.+||..+......-......-...+
T Consensus 20 ~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~~~~~~p~~r~~~~~ 97 (288)
T d1zgka1 20 YLEAYNPSNGTWLRLADLQVPRSGLAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGV 97 (288)
T ss_dssp CEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEE
T ss_pred eEEEEECCCCeEEECCCCCCccceeEEEEE--CCEEEEEeCcccCCCCccccchhhhcccccccccccccccceecceec
Confidence 588999988654443 2111112222222 4556666542 23567788776654332211111111111
Q ss_pred EecCCCEEEEEECCC-----cEEEEECCCCeeEEEeccc--CCceEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCc
Q 005096 236 FCRTDLKFCSCSDDT-----TVKVWDFARCQEERSLTGH--GWDVKSVDWHPTKSLLVSGGKD-----SLVKLWDAKSGR 303 (715)
Q Consensus 236 ~spd~~~Las~s~Dg-----~V~iwdl~~~~~~~~l~~~--~~~I~si~~spdg~~L~sgs~D-----g~I~iwDl~s~~ 303 (715)
..-+++.++.++.++ .+..+|..+.......... .... ++... ++++++.++.+ ..+.+||..+.+
T Consensus 98 ~~~~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~-~~~~~-~~~~~~~GG~~~~~~~~~~~~~d~~~~~ 175 (288)
T d1zgka1 98 GVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGV-GVAVL-NRLLYAVGGFDGTNRLNSAECYYPERNE 175 (288)
T ss_dssp EEETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSC-EEEEE-TTEEEEECCBCSSCBCCCEEEEETTTTE
T ss_pred cccceeeEEecceecccccceeeeeccccCccccccccccccccc-eeeee-eecceEecCcccccccceEEEeeccccc
Confidence 222555555554333 3445666554432221111 1112 22222 34555555543 357888887654
Q ss_pred eeEEecc-CCCceEEEEEcCCCCEEEEEECC-----CeEEEEECCCCeEEEEeecCCCCe-EEEEEccCCCCEEEEEeCC
Q 005096 304 ELCSFHG-HKNMVLCVKWNQNGNWVLTASKD-----QIIKLYDIRAMKELESFRGHRKDV-TALAWHPFHEEYFVSGSLD 376 (715)
Q Consensus 304 ~~~~~~~-~~~~I~sl~~spdg~~Lasgs~d-----g~I~iwDl~t~~~~~~~~~h~~~V-~~l~~sp~~~~~l~sgs~D 376 (715)
....-.. ......+++.. ++++++.++.+ ..+.++|..+.+....-....... .+++.. ++++++.|+.+
T Consensus 176 ~~~~~~~~~~~~~~~~~~~-~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~ 252 (288)
T d1zgka1 176 WRMITAMNTIRSGAGVCVL-HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVH--QGRIYVLGGYD 252 (288)
T ss_dssp EEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBC
T ss_pred cccccccccccccccccce-eeeEEEecCccccccccceeeeeecceeeecccCccCcccceEEEEE--CCEEEEEecCC
Confidence 3221111 11111222222 34555555433 356778887655433222111111 223332 67777777654
Q ss_pred C-----cEEEEEcCCCC
Q 005096 377 G-----SIFHWLVGHET 388 (715)
Q Consensus 377 G-----~I~iwd~~~~~ 388 (715)
+ .|.+||+.+..
T Consensus 253 ~~~~~~~v~~yd~~~~~ 269 (288)
T d1zgka1 253 GHTFLDSVECYDPDTDT 269 (288)
T ss_dssp SSCBCCEEEEEETTTTE
T ss_pred CCeecceEEEEECCCCE
Confidence 4 36778877653
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.03 E-value=0.048 Score=55.55 Aligned_cols=178 Identities=10% Similarity=0.049 Sum_probs=101.4
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEeCCC---------CceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECC
Q 005096 188 AIRSMVWSHNDNWMVSGDDGGAIKYWQNNM---------NNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFA 258 (715)
Q Consensus 188 ~V~~l~~spdg~~L~tgs~dg~I~iwd~~~---------~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~ 258 (715)
..+-++++....+|++|+.++ ++|..++. ..........-..|..++|+.| .|++. .++.+..++..
T Consensus 38 ~~~LLAVsn~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~~ip~v~~vafs~d--~l~v~-~~~~l~~~~~~ 113 (381)
T d1xipa_ 38 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPDVIFVCFHGD--QVLVS-TRNALYSLDLE 113 (381)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTTEEEEEEETT--EEEEE-ESSEEEEEESS
T ss_pred ccceEEEeCCCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceeccCCCCeEEEEeeCC--EEEEE-eCCCEEEEEee
Confidence 455677777777888777765 55654211 1000111111236888999754 45444 45578888887
Q ss_pred CCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEec-----cCCCceEEEEEcCCCCEEEEEECC
Q 005096 259 RCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFH-----GHKNMVLCVKWNQNGNWVLTASKD 333 (715)
Q Consensus 259 ~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~-----~~~~~I~sl~~spdg~~Lasgs~d 333 (715)
+.............+..+.+++. .++....++.+.++++.+++...... .-...+.|++|++.++.++++..+
T Consensus 114 ~l~~~~~~~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~kgkq~v~~~g~ 191 (381)
T d1xipa_ 114 ELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKDRSFQSFAWRNG 191 (381)
T ss_dssp STTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETTSCEEEEEEETT
T ss_pred ccccccccccccccccceecCCc--eeEEEecCCCEEEEEeccCccccccCCcceEEecCCceEEEEeCCcEEEEEeCCC
Confidence 65555554445567888888864 56777788999999998876432211 123457777777777777666432
Q ss_pred CeEEE-EECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEE
Q 005096 334 QIIKL-YDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSG 373 (715)
Q Consensus 334 g~I~i-wDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sg 373 (715)
+ +.+ -++..-..+.........|.+|.|.. +..++++-
T Consensus 192 ~-~q~k~~i~~~~~~~~p~~~~~~v~sI~WL~-~~~F~vvy 230 (381)
T d1xipa_ 192 E-MEKQFEFSLPSELEELPVEEYSPLSVTILS-PQDFLAVF 230 (381)
T ss_dssp E-EEEEEEECCCHHHHTSCTTTSEEEEEEESS-SSEEEEEE
T ss_pred c-eeeccCCCCccccCCCcCCCcceeEEEEec-CceEEEEE
Confidence 2 211 12211111111112345688889885 44455444
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=96.83 E-value=0.061 Score=54.11 Aligned_cols=189 Identities=9% Similarity=0.127 Sum_probs=116.1
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEec----CC--CEEEEEE-CC---CcEEEEECCC-CeeEEE
Q 005096 197 NDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCR----TD--LKFCSCS-DD---TTVKVWDFAR-CQEERS 265 (715)
Q Consensus 197 dg~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~sp----d~--~~Las~s-~D---g~V~iwdl~~-~~~~~~ 265 (715)
+..+|+....++-|++||++ ++.+..+. .+.++.|..-. ++ ..|++++ ++ .+|.+|.+.. ...+..
T Consensus 39 ~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~~ 115 (353)
T d1h6la_ 39 QNSKLITTNKKSGLAVYSLE-GKMLHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQS 115 (353)
T ss_dssp GGCEEEEEETTSCCEEEETT-CCEEEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEEE
T ss_pred CccEEEEEcCcCCEEEEcCC-CcEEEecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCccccccc
Confidence 45677777777779999986 55555543 35566655442 22 2244444 22 3688887742 223333
Q ss_pred ecc-------cCCceEEEEE--cCC-CC-EEEEEeCCCcEEEEECC---CC----ceeEEeccCCCceEEEEEcCCCCEE
Q 005096 266 LTG-------HGWDVKSVDW--HPT-KS-LLVSGGKDSLVKLWDAK---SG----RELCSFHGHKNMVLCVKWNQNGNWV 327 (715)
Q Consensus 266 l~~-------~~~~I~si~~--spd-g~-~L~sgs~Dg~I~iwDl~---s~----~~~~~~~~~~~~I~sl~~spdg~~L 327 (715)
+.. ....+..+|+ ++. +. ++++...+|.+..|.+. .+ +.++.+. ....+..|.+......|
T Consensus 116 ~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~-~~~q~EGCVvDde~~~L 194 (353)
T d1h6la_ 116 ITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFK-MNSQTEGMAADDEYGSL 194 (353)
T ss_dssp CSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEE-CSSCEEEEEEETTTTEE
T ss_pred ccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccC-CCCccceEEEeCCCCcE
Confidence 321 1234666776 554 44 56667788999888663 23 2344554 45678899999988999
Q ss_pred EEEECCCeEEEEECCC-----CeEEEEeec--CCCCeEEEEEccC---CCCEEEEEeCCCcEEEEEcCCCCc
Q 005096 328 LTASKDQIIKLYDIRA-----MKELESFRG--HRKDVTALAWHPF---HEEYFVSGSLDGSIFHWLVGHETP 389 (715)
Q Consensus 328 asgs~dg~I~iwDl~t-----~~~~~~~~~--h~~~V~~l~~sp~---~~~~l~sgs~DG~I~iwd~~~~~~ 389 (715)
+++-++..|+.++..- ...+....+ ....+..|++-.. .+.+|++.-.+++..|||......
T Consensus 195 yisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~~~ 266 (353)
T d1h6la_ 195 YIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQNK 266 (353)
T ss_dssp EEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCC
T ss_pred EEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCCcc
Confidence 9999888777777642 233333322 4567778876432 234556666788999999876533
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=96.80 E-value=0.06 Score=54.17 Aligned_cols=193 Identities=10% Similarity=0.139 Sum_probs=115.2
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcC----CC--CEEEEEe-CC---CcEEEEeCCCC-ceeee
Q 005096 155 TGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSH----ND--NWMVSGD-DG---GAIKYWQNNMN-NVKAN 223 (715)
Q Consensus 155 dg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~sp----dg--~~L~tgs-~d---g~I~iwd~~~~-~~~~~ 223 (715)
+..+|+....++-|++||++ ++.+..+. .+.++.|..-. ++ ..|++++ ++ .+|.+|.+... ..+..
T Consensus 39 ~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~~ 115 (353)
T d1h6la_ 39 QNSKLITTNKKSGLAVYSLE-GKMLHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQS 115 (353)
T ss_dssp GGCEEEEEETTSCCEEEETT-CCEEEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEEE
T ss_pred CccEEEEEcCcCCEEEEcCC-CcEEEecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCccccccc
Confidence 45677777777779999986 67776654 35666655432 22 2344443 32 35777876532 22222
Q ss_pred ecC-------CCCCeEEEEE--ecC-CC-EEEEEECCCcEEEEECC---CC----eeEEEecccCCceEEEEEcCCCCEE
Q 005096 224 KSA-------HKESVRDLSF--CRT-DL-KFCSCSDDTTVKVWDFA---RC----QEERSLTGHGWDVKSVDWHPTKSLL 285 (715)
Q Consensus 224 ~~~-------h~~~I~~l~~--spd-~~-~Las~s~Dg~V~iwdl~---~~----~~~~~l~~~~~~I~si~~spdg~~L 285 (715)
+.. ....+..+|+ ++. +. ++++...+|.+..|.+. .+ +.++.+. ....+..|.++.+...|
T Consensus 116 ~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~-~~~q~EGCVvDde~~~L 194 (353)
T d1h6la_ 116 ITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFK-MNSQTEGMAADDEYGSL 194 (353)
T ss_dssp CSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEE-CSSCEEEEEEETTTTEE
T ss_pred ccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccC-CCCccceEEEeCCCCcE
Confidence 211 1234667777 443 44 45666778999888762 22 3344454 45678899999998999
Q ss_pred EEEeCCCcEEEEECCC--C---ceeEEecc--CCCceEEEEEcC--CCC-EEEEEE-CCCeEEEEECCC-CeEEEEee
Q 005096 286 VSGGKDSLVKLWDAKS--G---RELCSFHG--HKNMVLCVKWNQ--NGN-WVLTAS-KDQIIKLYDIRA-MKELESFR 351 (715)
Q Consensus 286 ~sgs~Dg~I~iwDl~s--~---~~~~~~~~--~~~~I~sl~~sp--dg~-~Lasgs-~dg~I~iwDl~t-~~~~~~~~ 351 (715)
+++-++.-|..++++- . ..+....+ ....+..|++-. ++. ||++.+ .+++..|||..+ .+.+..|.
T Consensus 195 yisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~~~~~g~F~ 272 (353)
T d1h6la_ 195 YIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQNKYVADFQ 272 (353)
T ss_dssp EEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEE
T ss_pred EEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCCccccceEE
Confidence 9998887777776642 1 22222222 345677777543 333 555544 678899999876 35555554
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=96.79 E-value=0.31 Score=48.55 Aligned_cols=167 Identities=11% Similarity=0.083 Sum_probs=92.2
Q ss_pred CCcEEEEeCCCCceee-ee--cCC-----CCCeEEEEE--ecCCC-EEEEEE---CCCcEEEEECCCCe-eE---EEecc
Q 005096 207 GGAIKYWQNNMNNVKA-NK--SAH-----KESVRDLSF--CRTDL-KFCSCS---DDTTVKVWDFARCQ-EE---RSLTG 268 (715)
Q Consensus 207 dg~I~iwd~~~~~~~~-~~--~~h-----~~~I~~l~~--spd~~-~Las~s---~Dg~V~iwdl~~~~-~~---~~l~~ 268 (715)
.|.|.++|+++.+... .+ ... .-.-..+.+ ..++. +|++.. ...+|.+|++.... .+ .++..
T Consensus 67 ~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~ 146 (340)
T d1v04a_ 67 SGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRH 146 (340)
T ss_dssp CCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECC
T ss_pred CCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEEEeccCCCceeEEEEEeCCCCeEEEEeecCC
Confidence 4888889887643211 11 111 112234443 33554 355543 35678888874332 12 12221
Q ss_pred -cCCceEEEEEcCCCCEEEEEeC---------------CCcEEEEECCCCceeEEeccCCCceEEEEEcCCCCEEEEEE-
Q 005096 269 -HGWDVKSVDWHPTKSLLVSGGK---------------DSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTAS- 331 (715)
Q Consensus 269 -~~~~I~si~~spdg~~L~sgs~---------------Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasgs- 331 (715)
.....++|++..++.+++|-.. -+...+|..+.++. ......-...+.|++++|+++|+++.
T Consensus 147 ~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~~-~~~~~~l~~pNGI~~s~d~~~lyVa~t 225 (340)
T d1v04a_ 147 KLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDV-RVVAEGFDFANGINISPDGKYVYIAEL 225 (340)
T ss_dssp TTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSCE-EEEEEEESSEEEEEECTTSSEEEEEEG
T ss_pred ccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCCce-EEEcCCCCccceeEECCCCCEEEEEeC
Confidence 2245788999888887777321 12334444443333 22222345678999999998877665
Q ss_pred CCCeEEEEECCCCeEEEE--eecCCCCeEEEEEccCCCCEEEEEe
Q 005096 332 KDQIIKLYDIRAMKELES--FRGHRKDVTALAWHPFHEEYFVSGS 374 (715)
Q Consensus 332 ~dg~I~iwDl~t~~~~~~--~~~h~~~V~~l~~sp~~~~~l~sgs 374 (715)
..++|++|++.....+.. +..-....-.+.+.+.++.+++++.
T Consensus 226 ~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lwva~~ 270 (340)
T d1v04a_ 226 LAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGCH 270 (340)
T ss_dssp GGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEEE
T ss_pred CCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEEEEEC
Confidence 567899999875432222 2223455677888764566665553
|
| >d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: RCC1/BLIP-II family: beta-lactamase inhibitor protein-II, BLIP-II domain: beta-lactamase inhibitor protein-II, BLIP-II species: Streptomyces exfoliatus [TaxId: 1905]
Probab=96.75 E-value=0.047 Score=52.82 Aligned_cols=243 Identities=13% Similarity=0.084 Sum_probs=121.2
Q ss_pred eEEEEeCCC-CceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeecCCCCCeEEEEEecCCCEEEE
Q 005096 167 EFTLWNGQS-FNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCS 245 (715)
Q Consensus 167 ~I~Iwd~~~-~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~~h~~~I~~l~~spd~~~Las 245 (715)
+|+.|-..+ .............|..|+-. ..+.+... ||.|..|-.+....+-.-......|..|+.- ..+.+.
T Consensus 5 sv~~WG~~~~~~~~~~~~~~~~~i~~va~G--~~h~~al~-dG~v~~wG~N~~GQlG~~~~~~~~v~~v~~G--~~~~~a 79 (273)
T d1jtdb_ 5 SVVAWGGNNDWGEATVPAEAQSGVDAIAGG--YFHGLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAG--NYHSLA 79 (273)
T ss_dssp EEEEESSCCSSSTTCCCGGGSSSEEEEEEC--SSEEEEEE-TTEEEEEECCTTSTTSCCGGGGSCCCEEEEC--SSEEEE
T ss_pred EEEEECCCCCCCceeccccCCCCcEEEEcc--CCEEEEEE-CCEEEEEeCCCCCceeeeecccccceEEecC--CCceee
Confidence 577774222 11111122234567777763 23343334 7999999765543222222233455555542 233333
Q ss_pred EECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeccCCCceEEEEEcCCCC
Q 005096 246 CSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGN 325 (715)
Q Consensus 246 ~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~~~~~~~~~~I~sl~~spdg~ 325 (715)
- .|+.+..|.................+..++.... ..+. ..|+.+..|.................|..++-. ..
T Consensus 80 l-~dg~v~~wG~~~~gq~~~~~~~~~~~~~i~~~~~--~~~~-~~dg~v~~~g~~~~~~~~~~~~~~~~v~~~~~~--~~ 153 (273)
T d1jtdb_ 80 L-KDGEVIAWGGNEDGQTTVPAEARSGVDAIAAGAW--ASYA-LKDGKVIAWGDDSDGQTTVPAEAQSGVTALDGG--VY 153 (273)
T ss_dssp E-ETTEEEEEECCTTSTTCCCGGGGSSCCEEEEETT--EEEE-EETTEEEEEECCTTSTTSCCGGGGSSEEEEEEC--SS
T ss_pred e-eeeeeeccCCCcceeeccccccccceeEEeeecc--cccc-cccccceecccCCCCceeeeccCCceEEEEecc--ce
Confidence 3 4899999986443222111112233555554422 2222 357899999754332222222223345554432 22
Q ss_pred EEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEE
Q 005096 326 WVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLA 405 (715)
Q Consensus 326 ~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~ 405 (715)
.+ ....++.++.|.......+.........|..|+.. ....+.-. ||.|+.|=......+-. .......|..|+
T Consensus 154 ~~-~~~~~g~~~~~G~~~~g~~~~~~~~~~~v~~Is~G---~~h~~~l~-dG~v~~WG~n~~Gql~~-~~~~~~~v~~I~ 227 (273)
T d1jtdb_ 154 TA-LAVKNGGVIAWGDNYFGQTTVPAEAQSGVDDVAGG---IFHSLALK-DGKVIAWGDNRYKQTTV-PTEALSGVSAIA 227 (273)
T ss_dssp EE-EEEETTEEEEEECCTTSTTSCCGGGSSSEEEEEEC---SSEEEEEE-TTEEEEEECCTTSTTCC-CGGGGSSCCEEE
T ss_pred ee-eeecccceeEeecccCCcccccccccCCccceecc---ceeeEEEe-cCcEEEcCCCCCCccCC-CccCCCCcEEEE
Confidence 23 33457888888765433332222345567777763 33333334 89999996544332211 111233566776
Q ss_pred EcCCCCEEEEEECCCeEEEEecCC
Q 005096 406 WHPIGYLLCSGSNDHTTKFWCRNR 429 (715)
Q Consensus 406 ~spdg~~L~sgs~Dg~I~iWdl~~ 429 (715)
-. +...++. .||.|..|-.+.
T Consensus 228 ~G-~~~~~~l--~~g~v~~WG~~~ 248 (273)
T d1jtdb_ 228 SG-EWYSLAL--KNGKVIAWGSSR 248 (273)
T ss_dssp EC-SSCEEEE--ETTEEEEESTTC
T ss_pred eC-cceEEEE--ECCEEEEECCCC
Confidence 54 3333443 389999996554
|
| >d1wp5a_ b.68.10.1 (A:) Topoisomerase IV subunit A, ParC, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: GyrA/ParC C-terminal domain-like family: GyrA/ParC C-terminal domain-like domain: Topoisomerase IV subunit A, ParC, C-terminal domain species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.65 E-value=0.33 Score=48.02 Aligned_cols=232 Identities=8% Similarity=0.022 Sum_probs=136.0
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCC---ceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEEC---C------CCeeE
Q 005096 196 HNDNWMVSGDDGGAIKYWQNNMN---NVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDF---A------RCQEE 263 (715)
Q Consensus 196 pdg~~L~tgs~dg~I~iwd~~~~---~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl---~------~~~~~ 263 (715)
++...+++-+.+|.|+-.++++. .....-....+.+..+..+.....|+.-+..|.++..+. . .+..+
T Consensus 3 ~~E~v~v~lS~~GyiKR~~~~~~~~~~~~~~~~k~~D~v~~~~~~~t~d~ll~fT~~Grvy~l~v~eiP~~~~~s~G~pi 82 (323)
T d1wp5a_ 3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMKDTDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQHI 82 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCCTTCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEEG
T ss_pred CCCCEEEEEeCCCeEEEeeHHHhhhcCCCCCcccCCceEEEEEEEcCCCEEEEEecCCEEEEEeeccCcccccccccccc
Confidence 46677888899999986654321 000001123456777777777777888888888776654 2 12222
Q ss_pred EEec--ccCCce-EEEEEcC--CCCEEEEEeCCCcEEEEECCCC------cee--EEeccCCCceEEEEEcCCCCEEEEE
Q 005096 264 RSLT--GHGWDV-KSVDWHP--TKSLLVSGGKDSLVKLWDAKSG------REL--CSFHGHKNMVLCVKWNQNGNWVLTA 330 (715)
Q Consensus 264 ~~l~--~~~~~I-~si~~sp--dg~~L~sgs~Dg~I~iwDl~s~------~~~--~~~~~~~~~I~sl~~spdg~~Lasg 330 (715)
..+. .....| ..+.... +..+|+..+..|.++..++..- +.+ ..+. ....+..+.+..+...++.+
T Consensus 83 ~~ll~l~~~e~ii~~~~~~~~~~~~~l~~~Tk~G~iKr~~l~~f~~~~~~~g~~~i~L~-~~D~l~~v~~~~~~~~i~l~ 161 (323)
T d1wp5a_ 83 ANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLK-NDDQVVDVHLTDGMNELFLV 161 (323)
T ss_dssp GGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCC-TTCCEEEEEEECSCSEEEEE
T ss_pred eeeecccCCcceEEEeeccccccceeEEEEeehhheeeccHHHhhhhhccchhhhcccc-ccccccceeccCCCeEEEEE
Confidence 2221 122333 3344332 3568889999999999986421 111 2233 45567777777777889999
Q ss_pred ECCCeEEEEECCCCeE-------EEEeec-CCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCC-------CceE--EE
Q 005096 331 SKDQIIKLYDIRAMKE-------LESFRG-HRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHE-------TPQV--EI 393 (715)
Q Consensus 331 s~dg~I~iwDl~t~~~-------~~~~~~-h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~-------~~~~--~~ 393 (715)
+.+|.+..|+...-.. +.-++. ....|.+..+...++..|++.+..|..+...+..- .-.. ..
T Consensus 162 t~~G~~lrf~~~~vr~~gr~a~GV~~ikL~~~D~vv~~~~~~~~~~~ll~~T~~G~gKr~~~~e~~~~~RggkGv~~~k~ 241 (323)
T d1wp5a_ 162 THNGYALWFDESEVSIVGVRAAGVKGMNLKEGDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKRGVVILRE 241 (323)
T ss_dssp ETTSEEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSCCEECSCC
T ss_pred EecceeeEeecccccccCcccccccccccccccccchhhhccccccceeeeeeeheeecccchhhccccccccccccccc
Confidence 9999999998754322 222222 22345544443336678888899998887655321 1111 11
Q ss_pred eeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecC
Q 005096 394 HNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRN 428 (715)
Q Consensus 394 ~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~ 428 (715)
.......|..+....+...|+..+..|.+.-.+++
T Consensus 242 ~k~~~~~v~~~~~~~~~d~l~l~T~~g~~~r~~~~ 276 (323)
T d1wp5a_ 242 LKANPHRISGFVVAQDSDTIYLQTEKSFIETIKVG 276 (323)
T ss_dssp CSSSCCCEEEEEEECTTCEEEEEETTSCEEEEEGG
T ss_pred cccccceeeeeEecCCCCEEEEEeCCCEEEEEEhh
Confidence 11123356666666666677777888877666554
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.56 E-value=0.026 Score=54.44 Aligned_cols=212 Identities=10% Similarity=0.023 Sum_probs=93.9
Q ss_pred CcEEEEeCCCCceeee--ecCCCCCeEEEEEecCCCEEEEEEC---------CCcEEEEECCCCeeEEEe--cccCCceE
Q 005096 208 GAIKYWQNNMNNVKAN--KSAHKESVRDLSFCRTDLKFCSCSD---------DTTVKVWDFARCQEERSL--TGHGWDVK 274 (715)
Q Consensus 208 g~I~iwd~~~~~~~~~--~~~h~~~I~~l~~spd~~~Las~s~---------Dg~V~iwdl~~~~~~~~l--~~~~~~I~ 274 (715)
..|.+||.++++-... +.........+ . -+++.++.|+. -..+.+||..+.+....- ........
T Consensus 19 ~~~~~yd~~t~~W~~~~~~p~~R~~~~~~-~-~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~~~~~~p~~r~~~~ 96 (288)
T d1zgka1 19 SYLEAYNPSNGTWLRLADLQVPRSGLAGC-V-VGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIG 96 (288)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEE-E-ETTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCE
T ss_pred ceEEEEECCCCeEEECCCCCCccceeEEE-E-ECCEEEEEeCcccCCCCccccchhhhcccccccccccccccceeccee
Confidence 3578899888753332 21111111222 2 24555555542 235778888665443221 11111122
Q ss_pred EEEEcCCCCEEEEEeCCCc-----EEEEECCCCceeEEeccC--CCceEEEEEcCCCCEEEEEECC-----CeEEEEECC
Q 005096 275 SVDWHPTKSLLVSGGKDSL-----VKLWDAKSGRELCSFHGH--KNMVLCVKWNQNGNWVLTASKD-----QIIKLYDIR 342 (715)
Q Consensus 275 si~~spdg~~L~sgs~Dg~-----I~iwDl~s~~~~~~~~~~--~~~I~sl~~spdg~~Lasgs~d-----g~I~iwDl~ 342 (715)
++.+ ++++++.++.++. +..+|..+......-... ..... +... ++++++.|+.+ ..+..||..
T Consensus 97 ~~~~--~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~-~~~~-~~~~~~~GG~~~~~~~~~~~~~d~~ 172 (288)
T d1zgka1 97 VGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVG-VAVL-NRLLYAVGGFDGTNRLNSAECYYPE 172 (288)
T ss_dssp EEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCE-EEEE-TTEEEEECCBCSSCBCCCEEEEETT
T ss_pred cccc--ceeeEEecceecccccceeeeeccccCccccccccccccccce-eeee-eecceEecCcccccccceEEEeecc
Confidence 3333 4566665544333 445676654332211111 11112 2222 34555555433 357888887
Q ss_pred CCeEEEEeec-CCCCeEEEEEccCCCCEEEEEeCCC-----cEEEEEcCCCCceEEEeeccCCCE-EEEEEcCCCCEEEE
Q 005096 343 AMKELESFRG-HRKDVTALAWHPFHEEYFVSGSLDG-----SIFHWLVGHETPQVEIHNVHDNTV-WDLAWHPIGYLLCS 415 (715)
Q Consensus 343 t~~~~~~~~~-h~~~V~~l~~sp~~~~~l~sgs~DG-----~I~iwd~~~~~~~~~~~~~h~~~V-~~l~~spdg~~L~s 415 (715)
+.+....-.. ......+++.. ++.+++.++.++ .+.++|..+...... ........ .+++.. ++++++.
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~--~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~-~~~p~~r~~~~~~~~-~~~l~v~ 248 (288)
T d1zgka1 173 RNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTFV-APMKHRRSALGITVH-QGRIYVL 248 (288)
T ss_dssp TTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEEC-CCCSSCCBSCEEEEE-TTEEEEE
T ss_pred ccccccccccccccccccccce--eeeEEEecCccccccccceeeeeecceeeecc-cCccCcccceEEEEE-CCEEEEE
Confidence 6654322111 11112233332 456666665442 456666655432211 11111111 122222 5777777
Q ss_pred EECCCe-----EEEEecCC
Q 005096 416 GSNDHT-----TKFWCRNR 429 (715)
Q Consensus 416 gs~Dg~-----I~iWdl~~ 429 (715)
|+.++. |.+||+.+
T Consensus 249 GG~~~~~~~~~v~~yd~~~ 267 (288)
T d1zgka1 249 GGYDGHTFLDSVECYDPDT 267 (288)
T ss_dssp CCBCSSCBCCEEEEEETTT
T ss_pred ecCCCCeecceEEEEECCC
Confidence 765443 56676654
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.47 E-value=0.066 Score=54.47 Aligned_cols=176 Identities=8% Similarity=-0.029 Sum_probs=102.3
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEeCC-----------CCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 005096 146 SINRVLWTPTGRRLITGSQSGEFTLWNGQ-----------SFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQ 214 (715)
Q Consensus 146 ~I~~l~~spdg~~Latgs~dg~I~Iwd~~-----------~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd 214 (715)
..+-++++....+|++|+.++ ++|..++ ......... -..|..++|+.| .|++. .++.+..++
T Consensus 38 ~~~LLAVsn~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~~--ip~v~~vafs~d--~l~v~-~~~~l~~~~ 111 (381)
T d1xipa_ 38 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKE--IPDVIFVCFHGD--QVLVS-TRNALYSLD 111 (381)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEE--CTTEEEEEEETT--EEEEE-ESSEEEEEE
T ss_pred ccceEEEeCCCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceeccC--CCCeEEEEeeCC--EEEEE-eCCCEEEEE
Confidence 456788888888888888886 6666521 111222222 236889999744 45554 445677787
Q ss_pred CCCCceeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEec-----ccCCceEEEEEcCCCCEEEEEe
Q 005096 215 NNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLT-----GHGWDVKSVDWHPTKSLLVSGG 289 (715)
Q Consensus 215 ~~~~~~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~-----~~~~~I~si~~spdg~~L~sgs 289 (715)
...-............+..+.+++ ..++....++.+.++++.+.+...... .-...+.+++|++.++.++++.
T Consensus 112 ~~~l~~~~~~~~~~~~~~~~~~~p--~~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~kgkq~v~~~ 189 (381)
T d1xipa_ 112 LEELSEFRTVTSFEKPVFQLKNVN--NTLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKDRSFQSFAWR 189 (381)
T ss_dssp SSSTTCEEEEEECSSCEEEEEECS--SEEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETTSCEEEEEEE
T ss_pred eeccccccccccccccccceecCC--ceeEEEecCCCEEEEEeccCccccccCCcceEEecCCceEEEEeCCcEEEEEeC
Confidence 766444444334456677777765 467788889999999998875433221 1234567777777666666653
Q ss_pred CCCcEEEE-ECCCCceeEEeccCCCceEEEEEcCCCCEEEEE
Q 005096 290 KDSLVKLW-DAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTA 330 (715)
Q Consensus 290 ~Dg~I~iw-Dl~s~~~~~~~~~~~~~I~sl~~spdg~~Lasg 330 (715)
.+. +.+. ++.....+..-......|.+|.|..+..++++-
T Consensus 190 g~~-~q~k~~i~~~~~~~~p~~~~~~v~sI~WL~~~~F~vvy 230 (381)
T d1xipa_ 190 NGE-MEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF 230 (381)
T ss_dssp TTE-EEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred CCc-eeeccCCCCccccCCCcCCCcceeEEEEecCceEEEEE
Confidence 221 2111 222111111001234568899998766655544
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=96.42 E-value=0.68 Score=47.84 Aligned_cols=104 Identities=10% Similarity=0.204 Sum_probs=61.1
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeec--------CCCCCeEEEEEecC---CCEEEEEEC-------
Q 005096 187 HAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKS--------AHKESVRDLSFCRT---DLKFCSCSD------- 248 (715)
Q Consensus 187 ~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~--------~h~~~I~~l~~spd---~~~Las~s~------- 248 (715)
..-++|+|.+|+++|++--.+|.|++++..++....... .-......|+|+++ +.+|+.+..
T Consensus 27 ~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iYvsyt~~~~~~~ 106 (450)
T d1crua_ 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST 106 (450)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred CCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCccCCEEEEEEecCCCCCc
Confidence 467799999999988876567999999877765433221 12345678999884 344444311
Q ss_pred C----Cc--EEEEECCCCe--e-----E-EEe-cccCCceEEEEEcCCCCEEEEEeC
Q 005096 249 D----TT--VKVWDFARCQ--E-----E-RSL-TGHGWDVKSVDWHPTKSLLVSGGK 290 (715)
Q Consensus 249 D----g~--V~iwdl~~~~--~-----~-~~l-~~~~~~I~si~~spdg~~L~sgs~ 290 (715)
+ .. |..+...... . + ..+ .........|+|.+|+.++++.++
T Consensus 107 ~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~gg~l~fgpDG~LYvs~Gd 163 (450)
T d1crua_ 107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (450)
T ss_dssp -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred ccccccceEEEeeecccccccccceEEEeecccccccccccceeEcCCCCEEEEecC
Confidence 1 11 3333332111 0 1 111 112234678999999987777654
|
| >d1wp5a_ b.68.10.1 (A:) Topoisomerase IV subunit A, ParC, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: GyrA/ParC C-terminal domain-like family: GyrA/ParC C-terminal domain-like domain: Topoisomerase IV subunit A, ParC, C-terminal domain species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.39 E-value=0.41 Score=47.26 Aligned_cols=229 Identities=10% Similarity=0.069 Sum_probs=128.7
Q ss_pred CCCCEEEEEeCCCeEEEEeCCCCc----eEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEe---CCC------Cce
Q 005096 154 PTGRRLITGSQSGEFTLWNGQSFN----FEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQ---NNM------NNV 220 (715)
Q Consensus 154 pdg~~Latgs~dg~I~Iwd~~~~~----~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd---~~~------~~~ 220 (715)
++...+++-+.+|.|+--++++.+ .-..++ .++.+..+........|+.-+..|.++... +.. +..
T Consensus 3 ~~E~v~v~lS~~GyiKR~~~~~~~~~~~~~~~~k-~~D~v~~~~~~~t~d~ll~fT~~Grvy~l~v~eiP~~~~~s~G~p 81 (323)
T d1wp5a_ 3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMK-DTDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQH 81 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCC-TTCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEE
T ss_pred CCCCEEEEEeCCCeEEEeeHHHhhhcCCCCCccc-CCceEEEEEEEcCCCEEEEEecCCEEEEEeeccCccccccccccc
Confidence 456678889999998866533210 001112 234455554444555555556677766544 332 222
Q ss_pred eeeec--CCCCCeEEEEEec---CCCEEEEEECCCcEEEEECCCCee------E--EEecccCCceEEEEEcCCCCEEEE
Q 005096 221 KANKS--AHKESVRDLSFCR---TDLKFCSCSDDTTVKVWDFARCQE------E--RSLTGHGWDVKSVDWHPTKSLLVS 287 (715)
Q Consensus 221 ~~~~~--~h~~~I~~l~~sp---d~~~Las~s~Dg~V~iwdl~~~~~------~--~~l~~~~~~I~si~~spdg~~L~s 287 (715)
+..+. .....|..+.... ++.+|+..+..|.++..++..... . ..+ .....+..+.+..+...++.
T Consensus 82 i~~ll~l~~~e~ii~~~~~~~~~~~~~l~~~Tk~G~iKr~~l~~f~~~~~~~g~~~i~L-~~~D~l~~v~~~~~~~~i~l 160 (323)
T d1wp5a_ 82 IANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINL-KNDDQVVDVHLTDGMNELFL 160 (323)
T ss_dssp GGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCC-CTTCCEEEEEEECSCSEEEE
T ss_pred ceeeecccCCcceEEEeeccccccceeEEEEeehhheeeccHHHhhhhhccchhhhccc-cccccccceeccCCCeEEEE
Confidence 21111 1233444443332 357899999999999998743221 1 122 24456667777777778888
Q ss_pred EeCCCcEEEEECCCCc-------eeE--EeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCe-------EEEEee
Q 005096 288 GGKDSLVKLWDAKSGR-------ELC--SFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMK-------ELESFR 351 (715)
Q Consensus 288 gs~Dg~I~iwDl~s~~-------~~~--~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~-------~~~~~~ 351 (715)
++.+|.+..|+.+.-+ -+. .+...+.-|....+..++..|++.+..|..+...+...+ =+..++
T Consensus 161 ~t~~G~~lrf~~~~vr~~gr~a~GV~~ikL~~~D~vv~~~~~~~~~~~ll~~T~~G~gKr~~~~e~~~~~RggkGv~~~k 240 (323)
T d1wp5a_ 161 VTHNGYALWFDESEVSIVGVRAAGVKGMNLKEGDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKRGVVILR 240 (323)
T ss_dssp EETTSEEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSCCEECSC
T ss_pred EEecceeeEeecccccccCcccccccccccccccccchhhhccccccceeeeeeeheeecccchhhcccccccccccccc
Confidence 9999999999865321 122 223222224344555677889999999988887654322 122222
Q ss_pred ---cCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcC
Q 005096 352 ---GHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVG 385 (715)
Q Consensus 352 ---~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~ 385 (715)
.....|..+.... +.+.|+..+..|.+.-.++.
T Consensus 241 ~~k~~~~~v~~~~~~~-~~d~l~l~T~~g~~~r~~~~ 276 (323)
T d1wp5a_ 241 ELKANPHRISGFVVAQ-DSDTIYLQTEKSFIETIKVG 276 (323)
T ss_dssp CCSSSCCCEEEEEEEC-TTCEEEEEETTSCEEEEEGG
T ss_pred ccccccceeeeeEecC-CCCEEEEEeCCCEEEEEEhh
Confidence 2233455555544 45556666777777655553
|
| >d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: RCC1/BLIP-II family: beta-lactamase inhibitor protein-II, BLIP-II domain: beta-lactamase inhibitor protein-II, BLIP-II species: Streptomyces exfoliatus [TaxId: 1905]
Probab=96.33 E-value=0.055 Score=52.36 Aligned_cols=221 Identities=11% Similarity=0.049 Sum_probs=107.5
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeec
Q 005096 146 SINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKS 225 (715)
Q Consensus 146 ~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~~~ 225 (715)
.|..|+.... +.++.. ||+|+.|-..+...+-.-......|..|+.- ..+.+.- .|+.+..|............
T Consensus 27 ~i~~va~G~~--h~~al~-dG~v~~wG~N~~GQlG~~~~~~~~v~~v~~G--~~~~~al-~dg~v~~wG~~~~gq~~~~~ 100 (273)
T d1jtdb_ 27 GVDAIAGGYF--HGLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAG--NYHSLAL-KDGEVIAWGGNEDGQTTVPA 100 (273)
T ss_dssp SEEEEEECSS--EEEEEE-TTEEEEEECCTTSTTSCCGGGGSCCCEEEEC--SSEEEEE-ETTEEEEEECCTTSTTCCCG
T ss_pred CcEEEEccCC--EEEEEE-CCEEEEEeCCCCCceeeeecccccceEEecC--CCceeee-eeeeeeccCCCcceeecccc
Confidence 4666665322 333334 7999999655432221112223345555432 2222222 47899999754432211111
Q ss_pred CCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCcee
Q 005096 226 AHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGREL 305 (715)
Q Consensus 226 ~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~ 305 (715)
.....+..++... ...+. ..|+.+..|.................|..++-. ...+ ....++.++.|.......+
T Consensus 101 ~~~~~~~~i~~~~--~~~~~-~~dg~v~~~g~~~~~~~~~~~~~~~~v~~~~~~--~~~~-~~~~~g~~~~~G~~~~g~~ 174 (273)
T d1jtdb_ 101 EARSGVDAIAAGA--WASYA-LKDGKVIAWGDDSDGQTTVPAEAQSGVTALDGG--VYTA-LAVKNGGVIAWGDNYFGQT 174 (273)
T ss_dssp GGGSSCCEEEEET--TEEEE-EETTEEEEEECCTTSTTSCCGGGGSSEEEEEEC--SSEE-EEEETTEEEEEECCTTSTT
T ss_pred ccccceeEEeeec--ccccc-cccccceecccCCCCceeeeccCCceEEEEecc--ceee-eeecccceeEeecccCCcc
Confidence 2233444454432 22222 248899999754432222222223345555432 2223 3345788999976543322
Q ss_pred EEeccCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcC
Q 005096 306 CSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVG 385 (715)
Q Consensus 306 ~~~~~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~ 385 (715)
.........|..|+.... ..+.-. ||.|+-|=....-.+..-......|..|+.. +...++. . ||.|+.|-..
T Consensus 175 ~~~~~~~~~v~~Is~G~~--h~~~l~-dG~v~~WG~n~~Gql~~~~~~~~~v~~I~~G--~~~~~~l-~-~g~v~~WG~~ 247 (273)
T d1jtdb_ 175 TVPAEAQSGVDDVAGGIF--HSLALK-DGKVIAWGDNRYKQTTVPTEALSGVSAIASG--EWYSLAL-K-NGKVIAWGSS 247 (273)
T ss_dssp SCCGGGSSSEEEEEECSS--EEEEEE-TTEEEEEECCTTSTTCCCGGGGSSCCEEEEC--SSCEEEE-E-TTEEEEESTT
T ss_pred cccccccCCccceeccce--eeEEEe-cCcEEEcCCCCCCccCCCccCCCCcEEEEeC--cceEEEE-E-CCEEEEECCC
Confidence 222223456777765432 233333 8999999653322222112223456677654 2333333 3 8999999543
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=96.28 E-value=0.49 Score=49.02 Aligned_cols=104 Identities=13% Similarity=0.248 Sum_probs=62.1
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceEEEEec--------cCCCEEEEEEcCC---CCEEEEEeC-------
Q 005096 145 CSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQA--------HDHAIRSMVWSHN---DNWMVSGDD------- 206 (715)
Q Consensus 145 ~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~~~~~~~l~~--------h~~~V~~l~~spd---g~~L~tgs~------- 206 (715)
..-++|+|.+||++|++--.+|+|++++..+++....... -+.....|+|+++ ..+|..+..
T Consensus 27 ~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iYvsyt~~~~~~~ 106 (450)
T d1crua_ 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST 106 (450)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred CCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCccCCEEEEEEecCCCCCc
Confidence 4677999999999887776689999999877665443321 1356788999885 345543211
Q ss_pred C----Cc--EEEEeCCCCc--e------eeee-cCCCCCeEEEEEecCCCEEEEEEC
Q 005096 207 G----GA--IKYWQNNMNN--V------KANK-SAHKESVRDLSFCRTDLKFCSCSD 248 (715)
Q Consensus 207 d----g~--I~iwd~~~~~--~------~~~~-~~h~~~I~~l~~spd~~~Las~s~ 248 (715)
+ .. |..+..+... . ...+ .........|.|.+|+.++++.++
T Consensus 107 ~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~gg~l~fgpDG~LYvs~Gd 163 (450)
T d1crua_ 107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (450)
T ss_dssp -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred ccccccceEEEeeecccccccccceEEEeecccccccccccceeEcCCCCEEEEecC
Confidence 1 11 2222222211 0 1111 122234578999999987776654
|
| >d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Acylamino-acid-releasing enzyme, N-terminal donain domain: Acylamino-acid-releasing enzyme, N-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=96.03 E-value=0.53 Score=42.88 Aligned_cols=256 Identities=10% Similarity=0.005 Sum_probs=131.4
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCceEEEEeccCCCEEEEEEc-CCCCEEEEE------eCCCcEEEEeCCCCceeeeecCC
Q 005096 155 TGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWS-HNDNWMVSG------DDGGAIKYWQNNMNNVKANKSAH 227 (715)
Q Consensus 155 dg~~Latgs~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~s-pdg~~L~tg------s~dg~I~iwd~~~~~~~~~~~~h 227 (715)
+.++|+++...|.+.++-+..++.++..+ ..|.....- ..-.++..+ -+-..|.+-++........+...
T Consensus 25 ~d~ll~~~~seG~vni~~l~g~~~vkLtk---ePI~~~~~Pk~~ldfi~f~RDV~kGkE~Hai~~~Nlk~~GEE~~i~sp 101 (313)
T d2hu7a1 25 GDKLLVVGFSEGSVNAYLYDGGETVKLNR---EPINSVLDPHYGVGRVILVRDVSKGAEQHALFKVNTSRPGEEQRLEAV 101 (313)
T ss_dssp TTEEEEEEEETTEEEEEEESSSSCEECCS---SCCSEECEECTTBSEEEEEEECSTTSCCEEEEEEETTSTTCEEECTTS
T ss_pred CCcEEEEEeccceEEEEEEeCCEEEEEec---ccccCcCCCccCcceEEEEeehhcCcceeeEEEEccCCCCeeeEecCC
Confidence 34478888899999999888777665433 222222111 111222221 11233455555432222233222
Q ss_pred C-CCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEEEecc-cCCceEEEEEcCCCCEEEEE----eCCCcEEEEECCC
Q 005096 228 K-ESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTG-HGWDVKSVDWHPTKSLLVSG----GKDSLVKLWDAKS 301 (715)
Q Consensus 228 ~-~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~~l~~-~~~~I~si~~spdg~~L~sg----s~Dg~I~iwDl~s 301 (715)
+ -.|.++++. |.+.+++|+....+.+|-++.++......- .-+.|++|. +++++-. +.-..+.+-|+.+
T Consensus 102 k~vRI~S~~yd-dk~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI~----~d~I~G~g~~~g~~~sfF~adl~S 176 (313)
T d2hu7a1 102 KPMRILSGVDT-GEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIR----GDLIAGLGFFGGGRVSLFTSNLSS 176 (313)
T ss_dssp CSBEEEEEEEC-SSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEE----TTEEEEEEEEETTEEEEEEEETTT
T ss_pred ceEEEEEeeec-CceEEEecccCCceEEEEEeCCceeeeccCCCcceEEecc----CCeEEEEeeecCCcceEEEEeccc
Confidence 2 455566553 446677888888888888887765433221 112344432 3433311 1111233445544
Q ss_pred CceeEEeccCCCceEEEEEcCCCCEEEEEE----CCCeEEEEECCCCeEEEE-ee------cCCCCeEEEEEccCCCCEE
Q 005096 302 GRELCSFHGHKNMVLCVKWNQNGNWVLTAS----KDQIIKLYDIRAMKELES-FR------GHRKDVTALAWHPFHEEYF 370 (715)
Q Consensus 302 ~~~~~~~~~~~~~I~sl~~spdg~~Lasgs----~dg~I~iwDl~t~~~~~~-~~------~h~~~V~~l~~sp~~~~~l 370 (715)
|. ++.+....+.++...++++.+. ++.- +...| -+|+++++.-.. +. -....|+-+-+.| +++++
T Consensus 177 G~-lri~tpkeGS~~~ay~~~gnKV-~sdyEt~gEsywi-t~D~~s~~yerve~P~kd~~sy~p~~I~~~~Y~P-dd~L~ 252 (313)
T d2hu7a1 177 GG-LRVFDSGEGSFSSASISPGMKV-TAGLETAREARLV-TVDPRDGSVEDLELPSKDFSSYRPTAITWLGYLP-DGRLA 252 (313)
T ss_dssp EE-EEEECCSSEEEEEEEECTTSCE-EEEEEESSCEEEE-EECTTTCCEEECCCSSCHHHHHCCSEEEEEEECT-TSCEE
T ss_pred CC-EEEecCCCCcccceeEccCcee-eeccCCCCceEEE-EEecccCceeeeecCcccceeecceEEEeeeeCC-CCcEE
Confidence 43 4455555666777777766554 3332 12234 458876543221 11 1123466677899 78888
Q ss_pred EEEeCCCcEEEEEcCCCCceEEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecC
Q 005096 371 VSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRN 428 (715)
Q Consensus 371 ~sgs~DG~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~ 428 (715)
+.+-.||.-++|+-. +..+...+.+..+..-.+.-++...+...--+|-.+.
T Consensus 253 iiakrdG~s~lF~nG------k~in~p~G~~~gat~i~~~iyfshsSL~tP~kI~~~~ 304 (313)
T d2hu7a1 253 VVARREGRSAVFIDG------ERVEAPQGNHGRVVLWRGKLVTSHTSLSTPPRIVSLP 304 (313)
T ss_dssp EEEEETTEEEEEETT------EEECCCSSEEEEEEEETTEEEEEEEETTEEEEEEEET
T ss_pred EEEecCCchheeecc------eEecCCCCcccceEEECCEEEEeecccCCCceeEEcC
Confidence 889999999998753 2233334455544444333333334444444555443
|
| >d1suua_ b.68.10.1 (A:) DNA gyrase A C-terminal domain {Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: GyrA/ParC C-terminal domain-like family: GyrA/ParC C-terminal domain-like domain: DNA gyrase A C-terminal domain species: Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]
Probab=90.79 E-value=7.3 Score=37.26 Aligned_cols=224 Identities=9% Similarity=0.113 Sum_probs=123.0
Q ss_pred EEEEEeCCCeEEEEeCCCCce-------EE--EEeccCCCEEEEEEcCCCCEEEEEeCCCcEEE---EeCCCCc------
Q 005096 158 RLITGSQSGEFTLWNGQSFNF-------EM--ILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKY---WQNNMNN------ 219 (715)
Q Consensus 158 ~Latgs~dg~I~Iwd~~~~~~-------~~--~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~i---wd~~~~~------ 219 (715)
.+++.+.+|.|+--+..+.+. .. .++.++ .+..+.-....+.|+.-+..|.++. |++....
T Consensus 3 vvv~ls~~GyiKR~~~~~~~~q~rg~~g~~~~~~k~~D-~v~~~~~~~t~d~ll~fT~~G~~~~i~~~~ip~~~~~~~G~ 81 (304)
T d1suua_ 3 IVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGD-EIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRASKGQ 81 (304)
T ss_dssp EEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTTC-CEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC-------C
T ss_pred EEEEEECCCeEEEeeHHHHhhccCCCCCcccccccCCC-EEEEEEEecCCCeEEEEechHhhcChhhhhccccccccccc
Confidence 578889999998887655432 11 123333 3433333334445555556676554 3433211
Q ss_pred eeeee--cCCCCCeEEEEEe---cCCCEEEEEECCCcEEEEECCCCeeE-------EEecccCCceEEEEEcCCCCEEEE
Q 005096 220 VKANK--SAHKESVRDLSFC---RTDLKFCSCSDDTTVKVWDFARCQEE-------RSLTGHGWDVKSVDWHPTKSLLVS 287 (715)
Q Consensus 220 ~~~~~--~~h~~~I~~l~~s---pd~~~Las~s~Dg~V~iwdl~~~~~~-------~~l~~~~~~I~si~~spdg~~L~s 287 (715)
.+..+ ....+.|..+... ....+|+.++.+|.|+-.++...... ..+. ..+.+..+.....+..++.
T Consensus 82 ~i~~l~~l~~~e~i~~~~~~~~~~~~~~l~~~T~~G~iKr~~l~~f~~~~~~~~~a~kL~-~~D~lv~v~~~~~~~~v~~ 160 (304)
T d1suua_ 82 NISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLN-DKDFVTSAEIVFKDEKVIC 160 (304)
T ss_dssp BGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCC-TTCCEEEEEEECTTCEEEE
T ss_pred ccceeeeeccccccccccccccccccceEEEEEehhhhhhcccchhhccccccceeeccc-chhhccccccccccceeEe
Confidence 11111 1223444444332 24577999999999999987543211 1122 2344555556666677888
Q ss_pred EeCCCcEEEEECCCCce-------eEEec-cCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCCeE-------EEEeec
Q 005096 288 GGKDSLVKLWDAKSGRE-------LCSFH-GHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKE-------LESFRG 352 (715)
Q Consensus 288 gs~Dg~I~iwDl~s~~~-------~~~~~-~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~~~-------~~~~~~ 352 (715)
.+.+|....++...-.. +..++ .....+.++....++.+|++.+.+|.++...+..... +..++.
T Consensus 161 ~t~~G~~lrf~~~~v~~~gr~a~Gv~~i~L~~~d~v~~~~~~~~~~~ll~iT~~G~gKr~~~~e~~~~~Rg~~Gv~~~k~ 240 (304)
T d1suua_ 161 LSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLSVKENPYLLIVSENGYGKRLNMSKISELKRGATGYTSYKK 240 (304)
T ss_dssp EETTSEEEEEEGGGSCBCCTTBCCEECCCCCTTCCEEEEEECTTCSEEEEEETTSEEEEEEGGGSCBCCTTCCCEECSCT
T ss_pred eccccceeeeccccccccCccccceeeecccccccceeeeeccCCceEEEEecCCceEEccchhhhhhcccccccceeec
Confidence 88999988888653211 11111 1334566666677788999999999999888754322 222221
Q ss_pred ---CCCCeEEEEEccCCCCEEEEEeCCCcEEEEEc
Q 005096 353 ---HRKDVTALAWHPFHEEYFVSGSLDGSIFHWLV 384 (715)
Q Consensus 353 ---h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~ 384 (715)
....|.++.... .+..|+..+.+|.+.-..+
T Consensus 241 ~~~~~~~vv~~~~v~-~~d~i~l~T~~G~~~r~~~ 274 (304)
T d1suua_ 241 SDKKAGSVVDAIAVS-EDDEILLVSKRSKALRTVA 274 (304)
T ss_dssp TCTTTCSEEEEEEEC-TTCEEEEEETTCEEEEEEG
T ss_pred cccCCCcEEEEEEeC-CCCEEEEEeCCCEEEEEEh
Confidence 223444433332 3344555666777655554
|
| >d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: RCC1/BLIP-II family: Regulator of chromosome condensation RCC1 domain: Regulator of chromosome condensation RCC1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.37 E-value=10 Score=36.90 Aligned_cols=233 Identities=12% Similarity=0.019 Sum_probs=124.6
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEeCCC-Cc-----------eeeeecCCCCCeEEEEEecCCCEEEEEECCCcEE
Q 005096 186 DHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNM-NN-----------VKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVK 253 (715)
Q Consensus 186 ~~~V~~l~~spdg~~L~tgs~dg~I~iwd~~~-~~-----------~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~ 253 (715)
...|..|+.. ..+.++-+.||.|+.|=.+. +. ...........|..++. .....+....|+.|+
T Consensus 46 ~~~i~~ia~G--~~h~~al~~~G~vy~wG~n~~GQLG~g~~~~~~~~~~~~~~~~~~i~~i~~--g~~~~~~~~~~g~v~ 121 (401)
T d1a12a_ 46 PEDVVQAEAG--GMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQEKVVQVSA--GDSHTAALTDDGRVF 121 (401)
T ss_dssp SSCEEEEEEC--SSEEEEEETTSCEEEEECCTTSTTCSCCCSTTGGGSCEECCCCSCEEEEEE--CSSEEEEEETTSCEE
T ss_pred CCCeEEEEeC--CCEEEEEeCCCEEEEEeCCCCCCCCcccccccccccccccccccceeeecc--cccceeeccccccce
Confidence 3557777754 34556667889999995332 11 11111122344555544 445677778899999
Q ss_pred EEECCCC-------------eeEEEecccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCcee---------------
Q 005096 254 VWDFARC-------------QEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGREL--------------- 305 (715)
Q Consensus 254 iwdl~~~-------------~~~~~l~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~~--------------- 305 (715)
.|-.... ............|..|+.. ....+....++.++.|-......+
T Consensus 122 ~wG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~g--~~~~~~~~~~g~~~~~G~n~~gqlg~~~~~~~~~~~~~~ 199 (401)
T d1a12a_ 122 LWGSFRDNNGVIGLLEPMKKSMVPVQVQLDVPVVKVASG--NDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQG 199 (401)
T ss_dssp EEECEEETTEEEESSBBTBCEEEEEEECCSSCEEEEEEC--SSEEEEEETTSCEEEEECCTTSTTCSCGGGTSSSCGGGG
T ss_pred eccccccccccccccCCccccceeeeeccCCceeEEEec--ccceeeeecCCcccccccCCccccCCCCccccccCCccc
Confidence 9964211 1111122233456666554 345555667889999965431100
Q ss_pred -------EEec------cCCCceEEEEEcCCCCEEEEEECCCeEEEEECCCC----------eEEEE-e---ecCCCCeE
Q 005096 306 -------CSFH------GHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAM----------KELES-F---RGHRKDVT 358 (715)
Q Consensus 306 -------~~~~------~~~~~I~sl~~spdg~~Lasgs~dg~I~iwDl~t~----------~~~~~-~---~~h~~~V~ 358 (715)
.... .....|..++.. ....+....++.|..|..... ..... . ......+.
T Consensus 200 ~~~~~~p~~~~~~~~~~~~~~~i~~v~~g--~~~~~~l~~~g~v~~~g~n~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~ 277 (401)
T d1a12a_ 200 LERLLVPKCVMLKSRGSRGHVRFQDAFCG--AYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWV 277 (401)
T ss_dssp HHHHHSCEECCCBCSSCCSBCCEEEEEEE--TTEEEEEETTCCEEEEECCTTSTTSCSSCSCEEEEEECGGGCCTTCCEE
T ss_pred cccccccceeeccccCCCCCceEEEEEec--CCeEEEEecCCeEeeecccceecccccccccceeccccccccccceeEE
Confidence 0000 011234444433 344556667888888875321 11111 1 11222343
Q ss_pred EEEEccCCCCEEEEEeCCCcEEEEEcCCCC--------ce---EEEeeccCCCEEEEEEcCCCCEEEEEECCCeEEEEec
Q 005096 359 ALAWHPFHEEYFVSGSLDGSIFHWLVGHET--------PQ---VEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCR 427 (715)
Q Consensus 359 ~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~--------~~---~~~~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl 427 (715)
.+.. +....++...+|.|+.|...... .. -.... ....|..|+.. ....++...||.|+.|=.
T Consensus 278 ~i~~---g~~~~~~l~~~g~v~~wG~n~~gqlG~g~~~~~~~~P~~i~-~~~~i~~Is~G--~~hs~alt~dG~v~~WG~ 351 (401)
T d1a12a_ 278 GFSG---GQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLIS-RLPAVSSVACG--ASVGYAVTKDGRVFAWGM 351 (401)
T ss_dssp EEEE---CSSEEEEEETTSCEEEEECCGGGTTCSCTTCCCEEEEEECC-SSSSEEEEEEC--SSEEEEEETTSCEEEEEC
T ss_pred EEee---eccceeeeccCCCEEEecccccCccCCCcccccccCCEEcC-CCCCeEEEEee--CCEEEEEeCCCeEEEEec
Confidence 3333 56677778889999999653221 11 11121 23457777664 345566788999999977
Q ss_pred CCCCC
Q 005096 428 NRPGD 432 (715)
Q Consensus 428 ~~~~~ 432 (715)
+..++
T Consensus 352 n~~GQ 356 (401)
T d1a12a_ 352 GTNYQ 356 (401)
T ss_dssp CTTST
T ss_pred CCCCC
Confidence 66554
|
| >d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: RCC1/BLIP-II family: Regulator of chromosome condensation RCC1 domain: Regulator of chromosome condensation RCC1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.09 E-value=11 Score=36.75 Aligned_cols=229 Identities=8% Similarity=0.032 Sum_probs=121.4
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCeEEEEeCCC-C-----------ceEEEEeccCCCEEEEEEcCCCCEEEEEeCCCcEEE
Q 005096 145 CSINRVLWTPTGRRLITGSQSGEFTLWNGQS-F-----------NFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKY 212 (715)
Q Consensus 145 ~~I~~l~~spdg~~Latgs~dg~I~Iwd~~~-~-----------~~~~~l~~h~~~V~~l~~spdg~~L~tgs~dg~I~i 212 (715)
..|..|+... .+.++-+.||.|+.|=... + ..+.........|..|+.. ....+.-..+|.|..
T Consensus 47 ~~i~~ia~G~--~h~~al~~~G~vy~wG~n~~GQLG~g~~~~~~~~~~~~~~~~~~i~~i~~g--~~~~~~~~~~g~v~~ 122 (401)
T d1a12a_ 47 EDVVQAEAGG--MHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQEKVVQVSAG--DSHTAALTDDGRVFL 122 (401)
T ss_dssp SCEEEEEECS--SEEEEEETTSCEEEEECCTTSTTCSCCCSTTGGGSCEECCCCSCEEEEEEC--SSEEEEEETTSCEEE
T ss_pred CCeEEEEeCC--CEEEEEeCCCEEEEEeCCCCCCCCcccccccccccccccccccceeeeccc--ccceeecccccccee
Confidence 3477777653 3566778899999994322 1 1111122223456666543 445666678899999
Q ss_pred EeCCCCc-------------eeeeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEECCCCeeEE---------------
Q 005096 213 WQNNMNN-------------VKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEER--------------- 264 (715)
Q Consensus 213 wd~~~~~-------------~~~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl~~~~~~~--------------- 264 (715)
|-..... ...........|..|+. .....+....++.++.|-......+.
T Consensus 123 wG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~--g~~~~~~~~~~g~~~~~G~n~~gqlg~~~~~~~~~~~~~~~ 200 (401)
T d1a12a_ 123 WGSFRDNNGVIGLLEPMKKSMVPVQVQLDVPVVKVAS--GNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGL 200 (401)
T ss_dssp EECEEETTEEEESSBBTBCEEEEEEECCSSCEEEEEE--CSSEEEEEETTSCEEEEECCTTSTTCSCGGGTSSSCGGGGH
T ss_pred ccccccccccccccCCccccceeeeeccCCceeEEEe--cccceeeeecCCcccccccCCccccCCCCccccccCCcccc
Confidence 8532110 11111223344555444 34556667788999999753321100
Q ss_pred -------Ee------cccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCce----------eEE-e---ccCCCceEE
Q 005096 265 -------SL------TGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRE----------LCS-F---HGHKNMVLC 317 (715)
Q Consensus 265 -------~l------~~~~~~I~si~~spdg~~L~sgs~Dg~I~iwDl~s~~~----------~~~-~---~~~~~~I~s 317 (715)
.+ ......|..++.. ....+.-..|+.|..|....... +.. . ......+..
T Consensus 201 ~~~~~p~~~~~~~~~~~~~~~i~~v~~g--~~~~~~l~~~g~v~~~g~n~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (401)
T d1a12a_ 201 ERLLVPKCVMLKSRGSRGHVRFQDAFCG--AYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVG 278 (401)
T ss_dssp HHHHSCEECCCBCSSCCSBCCEEEEEEE--TTEEEEEETTCCEEEEECCTTSTTSCSSCSCEEEEEECGGGCCTTCCEEE
T ss_pred ccccccceeeccccCCCCCceEEEEEec--CCeEEEEecCCeEeeecccceecccccccccceeccccccccccceeEEE
Confidence 00 0011234555543 33455566788999887543111 111 1 111222333
Q ss_pred EEEcCCCCEEEEEECCCeEEEEECCC-----------CeEEEEeecCCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCC
Q 005096 318 VKWNQNGNWVLTASKDQIIKLYDIRA-----------MKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGH 386 (715)
Q Consensus 318 l~~spdg~~Lasgs~dg~I~iwDl~t-----------~~~~~~~~~h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~ 386 (715)
+. ......++...++.|+.|.-.. ...+-........|..|+. +....++...||.|+.|=.+.
T Consensus 279 i~--~g~~~~~~l~~~g~v~~wG~n~~gqlG~g~~~~~~~~P~~i~~~~~i~~Is~---G~~hs~alt~dG~v~~WG~n~ 353 (401)
T d1a12a_ 279 FS--GGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLPAVSSVAC---GASVGYAVTKDGRVFAWGMGT 353 (401)
T ss_dssp EE--ECSSEEEEEETTSCEEEEECCGGGTTCSCTTCCCEEEEEECCSSSSEEEEEE---CSSEEEEEETTSCEEEEECCT
T ss_pred Ee--eeccceeeeccCCCEEEecccccCccCCCcccccccCCEEcCCCCCeEEEEe---eCCEEEEEeCCCeEEEEecCC
Confidence 33 3445667777889999996432 1222222223345777766 556666678899999996543
|
| >d1suua_ b.68.10.1 (A:) DNA gyrase A C-terminal domain {Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: GyrA/ParC C-terminal domain-like family: GyrA/ParC C-terminal domain-like domain: DNA gyrase A C-terminal domain species: Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]
Probab=87.18 E-value=13 Score=35.38 Aligned_cols=226 Identities=9% Similarity=0.018 Sum_probs=126.9
Q ss_pred CEEEEEeCCCcEEEEeCCCCce-------e--eeecCCCCCeEEEEEecCCCEEEEEECCCcEEEEEC---CCCe-----
Q 005096 199 NWMVSGDDGGAIKYWQNNMNNV-------K--ANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDF---ARCQ----- 261 (715)
Q Consensus 199 ~~L~tgs~dg~I~iwd~~~~~~-------~--~~~~~h~~~I~~l~~spd~~~Las~s~Dg~V~iwdl---~~~~----- 261 (715)
+.+++.+.+|.|+--...+.+. + ..++ ..+.+..+.-+.....|+.-+..|.++...+ ....
T Consensus 2 dvvv~ls~~GyiKR~~~~~~~~q~rg~~g~~~~~~k-~~D~v~~~~~~~t~d~ll~fT~~G~~~~i~~~~ip~~~~~~~G 80 (304)
T d1suua_ 2 NIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLN-DGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRASKG 80 (304)
T ss_dssp EEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCC-TTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC-------
T ss_pred CEEEEEECCCeEEEeeHHHHhhccCCCCCccccccc-CCCEEEEEEEecCCCeEEEEechHhhcChhhhhcccccccccc
Confidence 3577888999998776544321 1 1122 2455666666666677777888887665443 2211
Q ss_pred -eEE---EecccCCceEEEEEc---CCCCEEEEEeCCCcEEEEECCCCc-----eeE--EeccCCCceEEEEEcCCCCEE
Q 005096 262 -EER---SLTGHGWDVKSVDWH---PTKSLLVSGGKDSLVKLWDAKSGR-----ELC--SFHGHKNMVLCVKWNQNGNWV 327 (715)
Q Consensus 262 -~~~---~l~~~~~~I~si~~s---pdg~~L~sgs~Dg~I~iwDl~s~~-----~~~--~~~~~~~~I~sl~~spdg~~L 327 (715)
.+. .+. ....|..+... ....+|+.++.+|.|+-.++..-+ .+. .+. ....+..+........+
T Consensus 81 ~~i~~l~~l~-~~e~i~~~~~~~~~~~~~~l~~~T~~G~iKr~~l~~f~~~~~~~~~a~kL~-~~D~lv~v~~~~~~~~v 158 (304)
T d1suua_ 81 QNISELINLG-DQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLN-DKDFVTSAEIVFKDEKV 158 (304)
T ss_dssp CBGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCC-TTCCEEEEEEECTTCEE
T ss_pred cccceeeeec-cccccccccccccccccceEEEEEehhhhhhcccchhhccccccceeeccc-chhhcccccccccccee
Confidence 111 111 12334333322 235678899999999988765321 111 222 23445556666667778
Q ss_pred EEEECCCeEEEEECCCCeE-------EEEeec-CCCCeEEEEEccCCCCEEEEEeCCCcEEEEEcCCCC-------ceEE
Q 005096 328 LTASKDQIIKLYDIRAMKE-------LESFRG-HRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHET-------PQVE 392 (715)
Q Consensus 328 asgs~dg~I~iwDl~t~~~-------~~~~~~-h~~~V~~l~~sp~~~~~l~sgs~DG~I~iwd~~~~~-------~~~~ 392 (715)
+..+.+|.+..++...-.. +..++. ....+..+.... .+.+|++.+.+|.++...+..-. -...
T Consensus 159 ~~~t~~G~~lrf~~~~v~~~gr~a~Gv~~i~L~~~d~v~~~~~~~-~~~~ll~iT~~G~gKr~~~~e~~~~~Rg~~Gv~~ 237 (304)
T d1suua_ 159 ICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLSVK-ENPYLLIVSENGYGKRLNMSKISELKRGATGYTS 237 (304)
T ss_dssp EEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCTTCCEEEEEECT-TCSEEEEEETTSEEEEEEGGGSCBCCTTCCCEEC
T ss_pred EeeccccceeeeccccccccCccccceeeecccccccceeeeecc-CCceEEEEecCCceEEccchhhhhhcccccccce
Confidence 8888999998888754222 222221 233455555555 67788888999999888764321 1111
Q ss_pred E--eeccCCCEEEEEEcCCCCEEEEEECCCeEEEEecC
Q 005096 393 I--HNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRN 428 (715)
Q Consensus 393 ~--~~~h~~~V~~l~~spdg~~L~sgs~Dg~I~iWdl~ 428 (715)
+ .....+.|.++....+...|+..+.+|.+.-..++
T Consensus 238 ~k~~~~~~~~vv~~~~v~~~d~i~l~T~~G~~~r~~~~ 275 (304)
T d1suua_ 238 YKKSDKKAGSVVDAIAVSEDDEILLVSKRSKALRTVAG 275 (304)
T ss_dssp SCTTCTTTCSEEEEEEECTTCEEEEEETTCEEEEEEGG
T ss_pred eeccccCCCcEEEEEEeCCCCEEEEEeCCCEEEEEEhh
Confidence 1 11122445544433344556677778877666554
|
| >d1co6a_ a.3.1.1 (A:) Cytochrome c2 {Rhodopseudomonas viridis [TaxId: 1079]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Cytochrome c superfamily: Cytochrome c family: monodomain cytochrome c domain: Cytochrome c2 species: Rhodopseudomonas viridis [TaxId: 1079]
Probab=80.63 E-value=0.32 Score=39.59 Aligned_cols=40 Identities=25% Similarity=0.291 Sum_probs=34.9
Q ss_pred ecCCCCccCCCCCCCCCCCCCCC-CCCCCCCCCcccCCCcC
Q 005096 455 GRMPGNFPLPEGPTTPGPFAPGL-TRNEGTIPGVGVAMPLS 494 (715)
Q Consensus 455 ~~~~~~~~~~~~~~~~g~~~~g~-gr~~gtv~Gy~~~~~l~ 494 (715)
.|..|+.+.+....+.|+.|.|+ +|..|++.||.|+.+|.
T Consensus 12 ~C~~CH~~~~~~~~~~GP~L~gi~gr~~g~~~~~~ys~al~ 52 (107)
T d1co6a_ 12 QCLVCHSIGPGAKNKVGPVLNGLFGRHSGTIEGFAYSDANK 52 (107)
T ss_dssp HHHTTCCCSTTCCCCSSCCCTTCTTCBTTCSTTCCCCHHHH
T ss_pred hccccCccCCCCCCCccccccCccCcccccccccccCHHHh
Confidence 36678888888889999999999 99999999999987764
|