Citrus Sinensis ID: 005108
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 714 | 2.2.26 [Sep-21-2011] | |||||||
| Q9MAH1 | 699 | TPR repeat-containing thi | yes | no | 0.778 | 0.795 | 0.680 | 0.0 | |
| Q9SIN1 | 691 | Inactive TPR repeat-conta | no | no | 0.913 | 0.943 | 0.540 | 0.0 | |
| Q84JR9 | 682 | TPR repeat-containing thi | no | no | 0.890 | 0.932 | 0.514 | 0.0 | |
| F4IXE4 | 730 | TPR repeat-containing thi | no | no | 0.931 | 0.910 | 0.507 | 0.0 | |
| Q99615 | 494 | DnaJ homolog subfamily C | yes | no | 0.478 | 0.692 | 0.284 | 5e-31 | |
| Q9QYI3 | 494 | DnaJ homolog subfamily C | yes | no | 0.478 | 0.692 | 0.289 | 8e-31 | |
| Q5R8D8 | 494 | DnaJ homolog subfamily C | yes | no | 0.478 | 0.692 | 0.281 | 1e-29 | |
| Q54IP0 | 539 | DnaJ homolog subfamily C | yes | no | 0.5 | 0.662 | 0.250 | 4e-29 | |
| Q9HGM9 | 476 | DnaJ homolog subfamily C | yes | no | 0.5 | 0.75 | 0.25 | 3e-23 | |
| Q6ES52 | 317 | TPR repeat-containing thi | no | no | 0.316 | 0.712 | 0.261 | 6e-16 |
| >sp|Q9MAH1|TTL1_ARATH TPR repeat-containing thioredoxin TTL1 OS=Arabidopsis thaliana GN=TTL1 PE=1 SV=1 | Back alignment and function desciption |
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Score = 793 bits (2047), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 385/566 (68%), Positives = 453/566 (80%), Gaps = 10/566 (1%)
Query: 155 NVLPTGNICPSGKILKTGIGLTSNRSSRTDTLGSGMGHYGHGSIMRGGSNHI-----VGG 209
NVLPTGNICPSGKI TG +T +RS R+D LGSG G YGHGSIMRGG GG
Sbjct: 136 NVLPTGNICPSGKIQITG--MTQSRS-RSDVLGSGTGTYGHGSIMRGGGISPAKPTNTGG 192
Query: 210 GSATSVKSGGSLAVGPENANVNRN--RGGICGGDAEELKRMGNELYRKGCFGEALSMYDK 267
GS + V G S A + I G D+EE+KR+GNE+YRKG F EAL +YD+
Sbjct: 193 GSNSPVNVGSSSRSSSTVATGETPIWKKAILGSDSEEVKRVGNEMYRKGLFNEALKLYDR 252
Query: 268 AISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVRLGQVE 327
AI+L+P NAA+RSNRAAAL GL RIGEAVKECE+AVR DPNY RAH RL LL+RLGQV
Sbjct: 253 AIALSPTNAAYRSNRAAALIGLSRIGEAVKECEDAVRSDPNYGRAHHRLALLLIRLGQVN 312
Query: 328 NARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQ 387
+AR+HLC G+ +DP E+ +L+ VEKHL KC DAR+V DWK+ L E DAAI +GADFSPQ
Sbjct: 313 SARKHLCFLGRPSDPMELQKLEAVEKHLIKCVDARRVTDWKTVLIEADAAIVSGADFSPQ 372
Query: 388 LSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMAL 447
L MC+VEA LKLH+L+DA+S L +PK+EP VS SQTRF GM EAY +FV+AQIEMAL
Sbjct: 373 LFMCKVEAFLKLHRLDDAQSKLLEVPKVEPFPVSCSQTRFSGMACEAYIYFVKAQIEMAL 432
Query: 448 GRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGL 507
GRFENAV AAEKA QIDPR EVA+L N V LVARARARGNDL+KSER+TEA AY EGL
Sbjct: 433 GRFENAVMAAEKASQIDPRCNEVAMLHNTVTLVARARARGNDLYKSERYTEASSAYAEGL 492
Query: 508 RFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADA 567
R DP N++LYCNRAACWFKLG WERS+ED NQAL QP+YTK LLRRAASNSK+E+W A
Sbjct: 493 RLDPCNAILYCNRAACWFKLGMWERSIEDCNQALRYQPSYTKPLLRRAASNSKMERWGAA 552
Query: 568 VRDFEVLRRELPDDNEIAESLFHAQVSLKKSRGEEVYNMKFGGEVEEVSSLEQFRAAVSL 627
V D+E L RELP D E+AESLFHAQV+LKKSRGEEV NM+FGGEVEE+ SLEQF++A++L
Sbjct: 553 VSDYEALIRELPHDKEVAESLFHAQVALKKSRGEEVLNMEFGGEVEEIYSLEQFKSAMNL 612
Query: 628 PGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAHAENVRIVPTFKI 687
PGVSV+HF +AS+ CKQISP+V++LC RYPSI+FLKVDID+ P + +AENVR+VPT KI
Sbjct: 613 PGVSVIHFSTASDHQCKQISPFVDSLCTRYPSIHFLKVDIDKCPSIGNAENVRVVPTVKI 672
Query: 688 YKNGSRMKEIVCPSRDMLEHSVRHYS 713
YKNGSR+KEIVCPS+++LE+SVRHYS
Sbjct: 673 YKNGSRVKEIVCPSKEVLEYSVRHYS 698
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Involved in responses to osmotic stress and abscisic acid (ABA). May act as a positive regulator of ABA signaling during germination and seedling development under stress. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SIN1|TTL3_ARATH Inactive TPR repeat-containing thioredoxin TTL3 OS=Arabidopsis thaliana GN=TTL3 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 710 bits (1832), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 383/709 (54%), Positives = 489/709 (68%), Gaps = 57/709 (8%)
Query: 22 FHNLSFCDDALSCEANKPDFRELDLGSPVSPLRTR--PSGLTATSTTTTTTTSSSSSSSG 79
F +L DD + NKPDFRELDLGSPVS L R S A + T+++ +S S+S
Sbjct: 20 FRDLQRNDD----DVNKPDFRELDLGSPVSTLMPRGSASSSAAATPTSSSGSSGSASGKP 75
Query: 80 SVSGQTRLNPVNKRHDSIPNSHSGELSGSSETSPTAPTR--KPGHARSDSGSVSVSGHPL 137
SVS Q + KR D SHSGELS PT TR KPGH RS S +G PL
Sbjct: 76 SVSSQ-----MAKRLDDAYKSHSGELSSPGSGMPTT-TRILKPGHRRSSS-----TGTPL 124
Query: 138 IYSGQS-----SHQS---------SVSSPPPNVLPTGNICPSGKILKTGIGLTSNRSSRT 183
I+SG S SH S S SP VLP GNICPSG+ILKTG + S SSRT
Sbjct: 125 IFSGSSFTSATSHTSPQGGGSGATSAVSPNTGVLPAGNICPSGRILKTG--MASRTSSRT 182
Query: 184 DTLGSGMGHYGHGSIMRGGSNHIVGGGSATSVKSGGSLAVGPENANVNRNRGGICGGDAE 243
+TL +G G+YGHG+++R G G + ++G EN E
Sbjct: 183 ETLCTGTGNYGHGNVVRSGGGGGTSGKAVRVAENG-------ENP--------------E 221
Query: 244 ELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAV 303
ELKRMGN++YR+G F EALS+YD+AI ++P NAA+RSNRAAALT L R+GEAVKEC EAV
Sbjct: 222 ELKRMGNDMYRRGSFSEALSLYDRAILISPGNAAYRSNRAAALTALRRLGEAVKECLEAV 281
Query: 304 RLDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARK 363
R+DP+Y RAHQRL SL +RLG+ ENARRH+C SGQ D ++ RLQ +EKHL +C +ARK
Sbjct: 282 RIDPSYSRAHQRLASLYLRLGEAENARRHICFSGQCPDQADLQRLQTLEKHLRRCWEARK 341
Query: 364 VGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSS 423
+GDWK+A++E DAAIA GAD SPQL C+ EA L+L Q+ED++ +S IP+++ S
Sbjct: 342 IGDWKTAIKETDAAIANGADSSPQLVACKAEAFLRLKQIEDSDFCVSCIPRLDHHYHSQP 401
Query: 424 QTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARA 483
Q + FGM+ EAY ++AQ++MALGRFENAV AE+A +D N EV +LNNVK+V RA
Sbjct: 402 QVKLFGMVVEAYVLCIQAQVDMALGRFENAVVKAERAAMLDQTNPEVVSVLNNVKMVVRA 461
Query: 484 RARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLI 543
R RGN+LF S RF+EAC AYG+GL+ D SNSVLYCNRAACW+KLG WE+SVED N AL
Sbjct: 462 RTRGNELFSSGRFSEACVAYGDGLKQDDSNSVLYCNRAACWYKLGLWEKSVEDCNHALKS 521
Query: 544 QPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAESLFHAQVSLKKSRGEEV 603
QP+Y KALLRRAAS KL +W DAV+D+E LRRELP D+E+AESL A+ L +R +E
Sbjct: 522 QPSYIKALLRRAASYGKLGRWEDAVKDYEFLRRELPGDSEVAESLERAKTVL-MNRSQES 580
Query: 604 YNMKFGGEVEEVSSLEQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFL 663
++ F EVE VS+L++F+ +V+LPGVSV HFKS+SN C++ISP++ TLC RYP ++F
Sbjct: 581 KSLGFNNEVEAVSTLDKFKKSVALPGVSVFHFKSSSNRQCEEISPFINTLCLRYPLVHFF 640
Query: 664 KVDIDESPGVAHAENVRIVPTFKIYKNGSRMKEIVCPSRDMLEHSVRHY 712
VD++ES +A AE++R VPTFK+YKNG ++KE+VCPS LE S++H+
Sbjct: 641 MVDVEESMALAKAESIRKVPTFKMYKNGDKVKEMVCPSHQFLEDSIKHF 689
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Involved in osmotic and salt stress tolerance. May play a role in the control of meristematic cell size during osmotic stress. May function as an adaptator protein for BRL2 and may be required for signaling affecting leaf vascular tissue pattern formation. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q84JR9|TTL4_ARATH TPR repeat-containing thioredoxin TTL4 OS=Arabidopsis thaliana GN=TTL4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 678 bits (1749), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/702 (51%), Positives = 478/702 (68%), Gaps = 66/702 (9%)
Query: 29 DDALSCEANKPDFRELDLGSPVSPLRTRPSGLTATSTTTTTTTSSSSSSSGSVSGQTRLN 88
DD + NKPDFRELD GSP+ P + + T ++ +++++S S+S +V+ Q
Sbjct: 27 DDVI----NKPDFRELDFGSPLRPRGSSSAAATPAASGSSSSSSGSASGKPAVTSQ---- 78
Query: 89 PVNKRHDSIPNSHSGELSGSSETSPTAP-----TRKPGHARSDSGSVSVSGHPLIYSG-- 141
+R SHSGELSG S+TSP P KPGH RS S +G PLIYSG
Sbjct: 79 -FARR------SHSGELSGLSQTSPVKPGSVNRNLKPGHRRSAS-----AGTPLIYSGLG 126
Query: 142 ----------QSSHQSSVSSPPPNVLPTGNICPSGKILKTGIGLTSNRSSRTDTLGSGMG 191
S +SP P VLPTGNICPSG+ILKTG + + S R +TL +G
Sbjct: 127 FSPVNNNNNSSRGGGSGATSPNPGVLPTGNICPSGRILKTG--MATRASVRPETLCTGTA 184
Query: 192 HYGHGSIMRGGSNHIVGGGSATSVKSGGSLAVGPENANVNRNRGGICGGDAEELKRMGNE 251
+YGHG+I+R GG + + K+ ++ D+EE+K+ GN
Sbjct: 185 NYGHGNIIR------TGGKVSHATKAAAEMS------------------DSEEVKKAGNV 220
Query: 252 LYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWR 311
+YRKG + EAL++YD+AISL+P N A+RSNRAAAL GR+ EAVKEC EAVR DP+Y R
Sbjct: 221 MYRKGNYAEALALYDRAISLSPENPAYRSNRAAALAASGRLEEAVKECLEAVRCDPSYAR 280
Query: 312 AHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSAL 371
AHQRL SL +RLG+ ENARRHLC+SGQ D ++ RLQ +EKHL CT+ARK+GDW++ +
Sbjct: 281 AHQRLASLYLRLGEAENARRHLCVSGQCPDQADLQRLQTLEKHLRLCTEARKIGDWRTVI 340
Query: 372 REGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGML 431
E DAAIA GAD SPQL C+ EA L+LHQ++D++ +S+IP+++ + + FG++
Sbjct: 341 SEIDAAIANGADSSPQLVACKAEAFLRLHQIKDSDLCISSIPRLDHHHTQPPE-KLFGIV 399
Query: 432 SEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNV-EVAVLLNNVKLVARARARGNDL 490
+AY V+AQ++MALGRFENA+ E+A ID N EV +LNNVK VA+AR RGN+L
Sbjct: 400 CDAYVLCVQAQVDMALGRFENAIVKVERAMTIDHSNSPEVVSVLNNVKNVAKARTRGNEL 459
Query: 491 FKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKA 550
F S R++EA AYG+GL+ D NSVLYCNRAACWFKLG WE+SV+D NQAL IQP+YTKA
Sbjct: 460 FSSGRYSEASVAYGDGLKLDAFNSVLYCNRAACWFKLGMWEKSVDDCNQALRIQPSYTKA 519
Query: 551 LLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAESLFHAQVSLKKSRGEEVYNMKFGG 610
LLRRAAS KL +W DAVRD+EVLR+ELP D+E+AESL A+ +L ++ EE + F
Sbjct: 520 LLRRAASYGKLGRWEDAVRDYEVLRKELPGDSEVAESLQRARNAL-SNKSEEPKYLGFNN 578
Query: 611 EVEEVSSLEQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDES 670
EVEEVS+L++F+ A SLPG+SV HFKS+SN + ISP+V TLC RYP ++F KVD++ES
Sbjct: 579 EVEEVSTLDKFKTATSLPGISVFHFKSSSNRQSEAISPFVNTLCLRYPLVHFFKVDVEES 638
Query: 671 PGVAHAENVRIVPTFKIYKNGSRMKEIVCPSRDMLEHSVRHY 712
+A AE+++ +PTFKIYK G ++KE+VCPS +LE SV H+
Sbjct: 639 LALAKAESIKKIPTFKIYKKGEKVKEMVCPSHQLLEDSVTHF 680
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Involved in osmotic and salt stress tolerance. May play a role in the control of meristematic cell size during osmotic stress. Arabidopsis thaliana (taxid: 3702) |
| >sp|F4IXE4|TTL2_ARATH TPR repeat-containing thioredoxin TTL2 OS=Arabidopsis thaliana GN=TTL2 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 677 bits (1747), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 371/731 (50%), Positives = 487/731 (66%), Gaps = 66/731 (9%)
Query: 30 DALSCEAN---KPDFRELDLGSPVSPLRTRPSGLTATSTTTTTTTSSSSSSSGSVSGQTR 86
D+L+ E N KPD +DLGSP++PL+T+PSGL++++++ ++++S S + +G T
Sbjct: 20 DSLNMEDNNNDKPDTINVDLGSPITPLQTQPSGLSSSTSSFSSSSSGSVTGH---AGHT- 75
Query: 87 LNPVNKRHDSI-------------------------PNSHSGELSGS-------SETSPT 114
PV ++ DS+ S + + GS S S
Sbjct: 76 -PPVTRKPDSVQPVPSASKSKSSNLSSAAKSSKSSTTPSSAAQFGGSYSPARAQSRASSQ 134
Query: 115 APTRKPGHARSDSGSVSVSGHPLIYSGQSSHQSSVSSPPP-NVLPTGNICPSGKILKTGI 173
+ R S S SV+ P S ++SSVSS +LP GN+ PSGK+ TG+
Sbjct: 135 VGAKTGNIIRPSSNSASVTTKP------SGNKSSVSSKQSLKILPAGNLVPSGKVQITGM 188
Query: 174 GLTSNRSSRTDTLGSGMGHYGHGSIMRGGSNHIVGGGSATSVKSGGSLAVGPENANVNRN 233
+ R+ LG G YG+GSI+RG + V + S L + N +
Sbjct: 189 ---TQEKPRSMVLGPGAKSYGYGSIIRGNNLSPVKPTMMSDSSSVLPLTLS------NNS 239
Query: 234 RGG----------ICGGDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRA 283
GG I G + EE+KR GNE++RKGCF EAL +YD+AI L+P NA + SNRA
Sbjct: 240 TGGPDAYTSWKIAIYGSNPEEVKRFGNEMFRKGCFAEALKLYDRAIELSPSNATYHSNRA 299
Query: 284 AALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPT 343
AAL+ LG+IGEAV ECE A++LDPN+ RAH RL SLL+RLG V+NA HL + DPT
Sbjct: 300 AALSSLGQIGEAVNECEIAIKLDPNFARAHHRLASLLLRLGYVDNAGIHLYSVEEPLDPT 359
Query: 344 EVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLE 403
V LQ V+KHL+KCT AR+ G+W L E AAIA+GAD SPQL+MC+ EALLKL +L+
Sbjct: 360 VVKMLQQVDKHLNKCTYARRRGEWSIVLTEVSAAIASGADSSPQLAMCKAEALLKLLRLD 419
Query: 404 DAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQI 463
DA+ L +PK+EP S S TRFF M++EAYT FV++Q+E+ALGRFENAV AEKA +I
Sbjct: 420 DAQRVLECVPKVEPFPASFSHTRFFDMIAEAYTSFVKSQMELALGRFENAVVTAEKASKI 479
Query: 464 DPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAAC 523
DP+N EV +L NV+L+ RAR RGNDL++ ER+TEA AY EGL++DPSN+ L C RA C
Sbjct: 480 DPQNNEVEILYKNVRLITRARDRGNDLYELERYTEARSAYAEGLKYDPSNATLLCYRADC 539
Query: 524 WFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNE 583
+FK+G WE S+ED N ALLI P+YTK L+RAA +KLE+WA+AV D+E+LR+ELP D E
Sbjct: 540 FFKVGMWESSIEDCNHALLILPSYTKPRLQRAALYTKLERWAEAVSDYEILRKELPYDKE 599
Query: 584 IAESLFHAQVSLKKSRGEEVYNMKFGGEVEEVSSLEQFRAAVSLPGVSVVHFKSASNLHC 643
IAESLFHAQV+LKKSRGE V NM+FGGEVEE+SSLE+ +AA++ PGVSVVHF AS+ C
Sbjct: 600 IAESLFHAQVALKKSRGEVVLNMEFGGEVEEISSLEELKAALTRPGVSVVHFFRASDPQC 659
Query: 644 KQISPYVETLCGRYPSINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKEIVCPSRD 703
K+IS +V+ LC RYPS++FLKV+I + P V +AE VR+VPTFKIYK G RMKEIVCPS++
Sbjct: 660 KEISTFVDALCVRYPSLHFLKVEIVKCPEVGNAERVRVVPTFKIYKLGIRMKEIVCPSKE 719
Query: 704 MLEHSVRHYSF 714
LE +VRHY
Sbjct: 720 ALEKTVRHYGL 730
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Plays a role in the transmission of male gametophyte. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q99615|DNJC7_HUMAN DnaJ homolog subfamily C member 7 OS=Homo sapiens GN=DNAJC7 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 136 bits (343), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 109/383 (28%), Positives = 181/383 (47%), Gaps = 41/383 (10%)
Query: 241 DAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECE 300
+AE K GN Y K + EA + Y KAI + P+NA++ NRAA L LGR EA+ + +
Sbjct: 27 EAETFKEQGNAYYAKKDYNEAYNYYTKAIDMCPKNASYYGNRAATLMMLGRFREALGDAQ 86
Query: 301 EAVRLDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVE--KHLSKC 358
++VRLD ++ R H R G + LG A C S Q+A + Q + K+ +
Sbjct: 87 QSVRLDDSFVRGHLREGKCHLSLGNAMAA----CRSFQRALELDHKNAQAQQEFKNANAV 142
Query: 359 TDARKVGDW---KSALREGDAAIAAGADFSP---QLSMCRVEALLKLHQLEDAESSLSNI 412
+ K+ + K R+ + +F+P + + + E L L + +A+S S+I
Sbjct: 143 MEYEKIAETDFEKRDFRKVVFCMDRALEFAPACHRFKILKAECLAMLGRYPEAQSVASDI 202
Query: 413 PKIEPSTVSSSQTR-----FFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRN 467
+++ + + R + + +A FFV+A + MA P +
Sbjct: 203 LRMDSTNADALYVRGLCLYYEDCIEKAVQFFVQA-LRMA------------------PDH 243
Query: 468 VEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDP----SNSVLYCNRAAC 523
+ + N K + + GN FK + A + Y E L DP +N+ LYCNR
Sbjct: 244 EKACIACRNAKALKAKKEDGNKAFKEGNYKLAYELYTEALGIDPNNIKTNAKLYCNRGTV 303
Query: 524 WFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNE 583
KL + + ++ED A+ + Y KA LRRA E++ +AVRD+E + + E
Sbjct: 304 NSKLRKLDDAIEDCTNAVKLDDTYIKAYLRRAQCYMDTEQYEEAVRDYEKV-YQTEKTKE 362
Query: 584 IAESLFHAQVSLKKSRGEEVYNM 606
+ L +AQ+ LKKS+ ++ Y +
Sbjct: 363 HKQLLKNAQLELKKSKRKDYYKI 385
|
Acts as co-chaperone regulating the molecular chaperones HSP70 and HSP90 in folding of steroid receptors, such as the glucocorticoid receptor and the progesterone receptor. Proposed to act as a recycling chaperone by facilitating the return of chaperone substrates to early stages of chaperoning if further folding is required. In vitro, induces ATP-independent dissociation of HSP90 but not of HSP70 from the chaperone-substrate complexes. Recruits NR1I3 to the cytoplasm. Homo sapiens (taxid: 9606) |
| >sp|Q9QYI3|DNJC7_MOUSE DnaJ homolog subfamily C member 7 OS=Mus musculus GN=Dnajc7 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 135 bits (341), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 111/383 (28%), Positives = 179/383 (46%), Gaps = 41/383 (10%)
Query: 241 DAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECE 300
+AE K GN Y K + EA + Y KAI + P NA++ NRAA L LGR EA+ + +
Sbjct: 27 EAESFKEQGNAYYAKKDYNEAYNYYTKAIDMCPNNASYYGNRAATLMMLGRFREALGDAQ 86
Query: 301 EAVRLDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVE--KHLSKC 358
++VRLD ++ R H R G + LG A C S Q+A + Q + K+ +
Sbjct: 87 QSVRLDDSFVRGHLREGKCHLSLGNAMAA----CRSFQRALELDHKNAQAQQEFKNANAV 142
Query: 359 TDARKVGDW---KSALREGDAAIAAGADFSP---QLSMCRVEALLKLHQLEDAESSLSNI 412
+ K+ + K R+ + +F+P + + + E L L + +A+ S+I
Sbjct: 143 MEYEKIAEVDFEKRDFRKVVFCMDRALEFAPACHRFKILKAECLAMLGRYPEAQFVASDI 202
Query: 413 PKIEPSTVSSSQTR-----FFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRN 467
+++ + + R + + +A FFV+A + MA P +
Sbjct: 203 LRMDSTNADALYVRGLCLYYEDCIEKAVQFFVQA-LRMA------------------PDH 243
Query: 468 VEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDP----SNSVLYCNRAAC 523
+ V N K + + GN FK + A + Y E L DP +N+ LYCNR
Sbjct: 244 EKACVACRNAKALKAKKEDGNKAFKEGNYKLAYELYTEALGIDPNNIKTNAKLYCNRGTV 303
Query: 524 WFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNE 583
KL Q E ++ED A+ + Y KA LRRA E++ +AVRD+E + + E
Sbjct: 304 NSKLRQLEDAIEDCTNAVKLDDTYIKAYLRRAQCYMDTEQFEEAVRDYEKV-YQTEKTKE 362
Query: 584 IAESLFHAQVSLKKSRGEEVYNM 606
+ L +AQ+ LKKS+ ++ Y +
Sbjct: 363 HKQLLKNAQLELKKSKRKDYYKI 385
|
Acts as co-chaperone regulating the molecular chaperones HSP70 and HSP90 in folding of steroid receptors, such as the glucocorticoid receptor and the progesterone receptor. Proposed to act as a recycling chaperone by facilitating the return of chaperone substrates to early stages of chaperoning if further folding is required. In vitro, induces ATP-independent dissociation of HSP90 but not of HSP70 from the chaperone-substrate complexes (By similarity). Recruits NR1I3 to the cytoplasm. Mus musculus (taxid: 10090) |
| >sp|Q5R8D8|DNJC7_PONAB DnaJ homolog subfamily C member 7 OS=Pongo abelii GN=DNAJC7 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 132 bits (331), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 108/383 (28%), Positives = 178/383 (46%), Gaps = 41/383 (10%)
Query: 241 DAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECE 300
+AE K GN Y K + EA + Y KAI + P+NA++ NRAA L LGR EA+ + +
Sbjct: 27 EAETFKEQGNAYYAKKDYNEAYNYYTKAIDMCPKNASYYGNRAATLMMLGRFREALGDAQ 86
Query: 301 EAVRLDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVE--KHLSKC 358
++VRLD ++ R R G + LG A C S Q+A + Q + K+ +
Sbjct: 87 QSVRLDDSFVRGRLREGKCHLSLGNAMAA----CRSFQRALELDHKNAQAQQEFKNANAV 142
Query: 359 TDARKVGDW---KSALREGDAAIAAGADFSP---QLSMCRVEALLKLHQLEDAESSLSNI 412
+ K+ + K R+ + +F+P + + + E L L + +A+S S+I
Sbjct: 143 MEYEKIAETDFEKRDFRKVVFCMDRALEFAPACHRFKILKAECLAMLGRYPEAQSVASDI 202
Query: 413 PKIEPSTVSSSQTR-----FFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRN 467
+++ + + R + + +A FFV+A + MA P +
Sbjct: 203 LRMDSTNADALYVRGLCLYYEDCIEKAVQFFVQA-LRMA------------------PDH 243
Query: 468 VEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDP----SNSVLYCNRAAC 523
+ + N K + + GN FK + A + Y E L DP +N+ LYCNR
Sbjct: 244 EKACIACRNAKALKAKKEDGNKAFKEGNYKLAYELYTEALGIDPNNIKTNAKLYCNRGTV 303
Query: 524 WFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNE 583
KL + + ++ED A+ + Y KA LRRA E++ +AVRD+E + + E
Sbjct: 304 NSKLRKLDDAIEDCTNAVKLDDTYIKAYLRRAQCYMDTEQYEEAVRDYEKV-YQTEKTKE 362
Query: 584 IAESLFHAQVSLKKSRGEEVYNM 606
+ L AQ+ LKKS+ + Y +
Sbjct: 363 HKQLLKSAQLELKKSKRRDYYKI 385
|
Acts as co-chaperone regulating the molecular chaperones HSP70 and HSP90 in folding of steroid receptors, such as the glucocorticoid receptor and the progesterone receptor. Proposed to act as a recycling chaperone by facilitating the return of chaperone substrates to early stages of chaperoning if further folding is required. In vitro, induces ATP-independent dissociation of HSP90 but not of HSP70 from the chaperone-substrate complexes. Recruits NR1I3 to the cytoplasm. Pongo abelii (taxid: 9601) |
| >sp|Q54IP0|DNJC7_DICDI DnaJ homolog subfamily C member 7 homolog OS=Dictyostelium discoideum GN=dnajc7 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 130 bits (327), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 98/391 (25%), Positives = 191/391 (48%), Gaps = 34/391 (8%)
Query: 241 DAEELKRMGNELYRKGCFGEALSMYDKAISLAPRN-AAFRSNRAAALTGL---GRIGEAV 296
D EE K GN +++ + +A+ Y +AI L+ AA+ NRAAA + + +++
Sbjct: 2 DHEECKTQGNNYFKQSQYMDAIRCYTQAIELSNGTIAAYYGNRAAAYLAICTKSSLQDSI 61
Query: 297 KECEEAVRLDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQADP------TEVHRLQV 350
K+ +A+ L+ ++ + + R + L Q + A + + G DP E +++
Sbjct: 62 KDSLKAIELERSFIKGYTRASKAYIHLAQYDQAA-SIIVRGLVFDPRNNELLQEKNQIDS 120
Query: 351 VEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLS 410
+++ +S T + + + S+L + + ++ + ++ QL + + L++L Q A + ++
Sbjct: 121 IQRTISSLTKEKALSNPSSSLNQIENVLSQ-SKYNTQLQVLKARVLIELKQYPQASNLMT 179
Query: 411 NIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEV 470
+ ++ + + G+ + + + +AL F+N++T DP E
Sbjct: 180 TL--LQEDSRNPEYLYVRGL-----SLYYQNNFPLALQHFQNSLT-------YDPDYSES 225
Query: 471 AVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPS----NSVLYCNRAACWFK 526
V L ++ + + GN+ F+S+ + A ++ E L DP NS LY NRAA
Sbjct: 226 RVALKRLRSIESKKKEGNEYFQSKNYQAAYDSFTEALSIDPKLETMNSQLYSNRAAALVH 285
Query: 527 LGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAE 586
L + ++ D A+ I PNY KA +RRA K E + DAVRD+E + P++ E+
Sbjct: 286 LNRISEAINDCTSAVTIDPNYGKAYIRRAQCQMKQENYEDAVRDYEKAQSLDPENGELQR 345
Query: 587 SLFHAQVSLKKSRGEEVYNM----KFGGEVE 613
++ A+++ KKS ++ Y + K GE E
Sbjct: 346 NIKEAKIAHKKSLRKDYYKILGVSKEAGETE 376
|
Dictyostelium discoideum (taxid: 44689) |
| >sp|Q9HGM9|DNJC7_SCHPO DnaJ homolog subfamily C member 7 homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC543.02c PE=4 SV=1 | Back alignment and function description |
|---|
Score = 110 bits (276), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 103/412 (25%), Positives = 184/412 (44%), Gaps = 55/412 (13%)
Query: 242 AEELKRMGNELYRKGCFGEALSMYDKAISLAPRNA--AFRSNRAAALTGLGRIGEAVKEC 299
AE+ K +GN Y++ + EA+ Y +AI L +A + SNRAA +G A+ +
Sbjct: 23 AEKQKAIGNAFYKEKKYAEAIKAYTEAIDLGSDSALAIYYSNRAATYMQIGEFELALCDA 82
Query: 300 EEAVRLDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCT 359
+++ R+ P+ + R+ L + A + L +QA ++ L +++ + T
Sbjct: 83 KQSDRIKPDVPKTQSRIRQAYEGLSILNEA--EVYLKNKQAGLA-LNALDRLQRRIDSTT 139
Query: 360 DARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQ--LEDAESSLSNIPKIEP 417
P +S ++A + + Q ++ A+ ++ ++ P
Sbjct: 140 -------------------------QPPMSWMYLKAQVYIFQNDMDRAQKIAHDVLRLNP 174
Query: 418 STVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNV 477
V + +R ++ G A+T ++A ++DP L V
Sbjct: 175 KNVEA--------------LVLRGKVMYYSGENAKAITHFQEALKLDPDCTTAKTLFKQV 220
Query: 478 KLVARARARGNDLFKSERFTEACQAYGEGLRFDPSN----SVLYCNRAACWFKLGQWERS 533
+ + + +GNDLF+ + +A + Y E L+ DP N + LY NRA +L + E +
Sbjct: 221 RKLENTKNQGNDLFRQGNYQDAYEKYSEALQIDPDNKETVAKLYMNRATVLLRLKRPEEA 280
Query: 534 VEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAESLFHAQV 593
+ DS+ AL I +Y K L RA ++ LEKW +AVRD + D + + L Q+
Sbjct: 281 LSDSDNALAIDSSYLKGLKVRAKAHEALEKWEEAVRDVQSAIELDASDANLRQELRRLQL 340
Query: 594 SLKKSRGEEVYNMKFGGEVEEVSSLEQFRAAVSLPGVSVVH-FKSASNLHCK 644
LKKS+ ++ Y K G +E + +E +A L V H K+A NL +
Sbjct: 341 ELKKSKRKDHY--KILGVSKEATDIEIKKAYRKL--ALVYHPDKNAGNLEAE 388
|
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|Q6ES52|TDX_ORYSJ TPR repeat-containing thioredoxin TDX OS=Oryza sativa subsp. japonica GN=Os09g0401200 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 86.7 bits (213), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 68/260 (26%), Positives = 118/260 (45%), Gaps = 34/260 (13%)
Query: 486 RGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQP 545
+G D F + EA + E + +P++++ Y RA + K + ++ D++ AL I P
Sbjct: 56 KGVDAFSEGKLDEAIEHLTEAIVLNPTSAIAYATRAVIFVKSKKPNAAIRDADAALKINP 115
Query: 546 NYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAESL----------------- 588
+ K R + + L KW +A +D + + L D EI L
Sbjct: 116 DSAKGYKSRGMAKAMLGKWEEAAQDLRMAAK-LDYDEEIGAELKKVEPNVLKIEEHRKKY 174
Query: 589 --FHAQVSLKKSRGEE-----------VYNMKFGGEVEEVSSLE---QFRAAVSLPGVSV 632
+ +KK+ E+ +K G + SS E + +AA SL + V
Sbjct: 175 ERLRKERDIKKAEMEKQRKHAEEVSAASAALKDGDVIAIHSSSELDTKLKAASSLSRLVV 234
Query: 633 VHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAHAENVRIVPTFKIYKNGS 692
++F +A C+ I P ++L ++ ++ FLKVDIDE VA+ NV VP+F +NG
Sbjct: 235 LYFTAAWCGPCRFIGPVCKSLAEKHRNVVFLKVDIDELNSVAYRWNVSSVPSFFFVRNGK 294
Query: 693 RMKEIVCPSRDMLEHSVRHY 712
+ ++V ++ LE V +
Sbjct: 295 EIDKVVGADKNGLERKVAQH 314
|
Probable thiol-disulfide oxidoreductase that may participate in various redox reactions and act as chaperone under heat shock. May interact with HSP70 proteins through the TPR repeats. Oryza sativa subsp. japonica (taxid: 39947) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 714 | ||||||
| 224117056 | 698 | predicted protein [Populus trichocarpa] | 0.922 | 0.944 | 0.705 | 0.0 | |
| 449456585 | 698 | PREDICTED: TPR repeat-containing thiored | 0.948 | 0.969 | 0.697 | 0.0 | |
| 356544082 | 698 | PREDICTED: TPR repeat-containing thiored | 0.941 | 0.962 | 0.689 | 0.0 | |
| 356546820 | 692 | PREDICTED: TPR repeat-containing thiored | 0.934 | 0.963 | 0.706 | 0.0 | |
| 449528021 | 698 | PREDICTED: LOW QUALITY PROTEIN: TPR repe | 0.948 | 0.969 | 0.696 | 0.0 | |
| 255566591 | 640 | Small glutamine-rich tetratricopeptide r | 0.892 | 0.995 | 0.688 | 0.0 | |
| 356577383 | 676 | PREDICTED: TPR repeat-containing thiored | 0.938 | 0.991 | 0.643 | 0.0 | |
| 356514583 | 678 | PREDICTED: TPR repeat-containing thiored | 0.948 | 0.998 | 0.654 | 0.0 | |
| 359493606 | 656 | PREDICTED: TPR repeat-containing thiored | 0.903 | 0.983 | 0.649 | 0.0 | |
| 225446591 | 710 | PREDICTED: TPR repeat-containing thiored | 0.938 | 0.943 | 0.621 | 0.0 |
| >gi|224117056|ref|XP_002317465.1| predicted protein [Populus trichocarpa] gi|222860530|gb|EEE98077.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 963 bits (2490), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 494/700 (70%), Positives = 563/700 (80%), Gaps = 41/700 (5%)
Query: 29 DDALSCEANKPDFRELDLGSPVSPLRTRPSGLTATSTTTTTTTSSSSSSSGSVSGQTRL- 87
D S EANKPDFRELDLGSPVSPLRTR GL T+T T T +++++++ S S +
Sbjct: 26 DSLSSFEANKPDFRELDLGSPVSPLRTR-GGLITTTTATATAATTTTTTTSSSSSSSGSA 84
Query: 88 ----NPVNKRHDSIPNSHSGELSGSSETSPTAPTRK--PGHARSDSGSVSVSGHPLIYSG 141
NP++K ++S +HSGELS SSE+SPTA +K PGH+RSDS L YSG
Sbjct: 85 SGAQNPLHKPNNS---NHSGELSNSSESSPTAGAKKGQPGHSRSDS---------LTYSG 132
Query: 142 QSSHQSSVSSPPP-NVLPTGNICPSGKILKTGIGLTSNRSSRTDTLGSGMGHYGHGSIMR 200
Q + QS+V+SP NVLPTGNICPSG+ILKTG+G+ +NRS++ D LGSG +YGHGSIMR
Sbjct: 133 QITSQSAVNSPATGNVLPTGNICPSGRILKTGMGM-ANRSAKADVLGSGTANYGHGSIMR 191
Query: 201 GGSNHIVGGGSATSVKSGGSLAVGPENANVNRNRGGICGGDAEELKRMGNELYRKGCFGE 260
GG S K V + N R G D EE+KR GNE+Y+KGCFGE
Sbjct: 192 GGG----------SAKCANLDVVNSASRNAWSVRAGSV--DPEEVKRTGNEMYKKGCFGE 239
Query: 261 ALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLL 320
AL +YDKAI+LAP NAA+RSNRAAAL GLGR+ EAVKECEEAVRLDPNYWRAHQRLG LL
Sbjct: 240 ALGLYDKAIALAPGNAAYRSNRAAALMGLGRVVEAVKECEEAVRLDPNYWRAHQRLGVLL 299
Query: 321 VRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAA 380
+RLG VE+AR+HLC GQ DP E+ +LQ+VEKHLSKC+DARKV DW LRE +A+IAA
Sbjct: 300 IRLGLVESARKHLCFPGQHPDPVELQKLQLVEKHLSKCSDARKVNDWNGTLREAEASIAA 359
Query: 381 GADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVR 440
GAD+ PQL MCR EALLKLHQLEDAES L +PK+EP + SQ RFFGMLSEAY F V+
Sbjct: 360 GADYCPQLFMCRAEALLKLHQLEDAESCLLKVPKLEPHA-TCSQARFFGMLSEAYPFLVQ 418
Query: 441 AQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEAC 500
AQIEMALGRFENAV AAEKAGQID RNVEVAVLL NV+LVARAR RGNDLFKSERFTEAC
Sbjct: 419 AQIEMALGRFENAVAAAEKAGQIDSRNVEVAVLLKNVRLVARARTRGNDLFKSERFTEAC 478
Query: 501 QAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSK 560
AYGEGLR DPSNSVLYCNRAACWFKLG WERS++D NQAL IQPNYTKALLRRAASNSK
Sbjct: 479 SAYGEGLRLDPSNSVLYCNRAACWFKLGSWERSIDDCNQALRIQPNYTKALLRRAASNSK 538
Query: 561 LEKWADAVRDFEVLRRELPDDNEIAESLFHAQVSLKKSRGEEVYNMKFGGEVEEVSSLEQ 620
LE+WADAVRD+EVLRRELPDDN +AESLFHAQV+LKKSRGEEVYNMKFGGEVEEV EQ
Sbjct: 539 LERWADAVRDYEVLRRELPDDNGVAESLFHAQVALKKSRGEEVYNMKFGGEVEEVLGFEQ 598
Query: 621 FRAAVSLPG------VSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVA 674
FRAA+SLPG VSVVHFKS+SN+HCKQISP+V+TLCGRYPSINFLKVD++E P +A
Sbjct: 599 FRAAISLPGKSSLSCVSVVHFKSSSNVHCKQISPFVDTLCGRYPSINFLKVDVEEHPAIA 658
Query: 675 HAENVRIVPTFKIYKNGSRMKEIVCPSRDMLEHSVRHYSF 714
+AE+VRIVPTFKIYKNG+R+KEIVCPS D+LEHSVRHYSF
Sbjct: 659 NAEDVRIVPTFKIYKNGNRVKEIVCPSHDVLEHSVRHYSF 698
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449456585|ref|XP_004146029.1| PREDICTED: TPR repeat-containing thioredoxin TTL1-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 948 bits (2450), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 513/735 (69%), Positives = 583/735 (79%), Gaps = 58/735 (7%)
Query: 1 MSHSGKNNNTTTTATNITELGFHNLS-FCDDALSCEANKPDFRELDLGSPVSPLRTRPSG 59
MSHSG I++L F +LS D++SCE NKPDFRELDLGSPVSPLRTR
Sbjct: 1 MSHSG---------NPISDLRFDHLSDRFRDSVSCEVNKPDFRELDLGSPVSPLRTR--- 48
Query: 60 LTATSTTTTTTTSSSSSSSGSVSGQTRLNPVNKRHDSIPNSHSGELSGSSETSPTAPTR- 118
T SSSSSSSGSVSG+ NPV KR DS PN+HSGELSGSSE+SPTA
Sbjct: 49 ---HQTGGGPAASSSSSSSGSVSGRNGPNPVAKRSDSGPNNHSGELSGSSESSPTAAESL 105
Query: 119 ---------KPGHARSDSGSVSVSGHPLIYSGQSSHQSSVSSPPPNVLPTGNICPSGKIL 169
K GH RSDS S HPLIYSGQS QSSV+SP NVLPTGNICPSG+IL
Sbjct: 106 RSIGTPKNFKSGHNRSDSAS----NHPLIYSGQS--QSSVTSPS-NVLPTGNICPSGRIL 158
Query: 170 KTGIGLTSNRSSRTDTLGSGMGHYGHGSIMRGGSNHIVGGGSATSVKSGGSLAVGPENAN 229
K + ++NRSSRTD LGSG G+YGHGSIMRG +GG VK+G ++ +N
Sbjct: 159 KPSMP-STNRSSRTDVLGSGSGNYGHGSIMRG-----LGG-----VKTGAVESI----SN 203
Query: 230 VNRNRGGICGGDA----------EELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFR 279
GG+ GGD+ EELKR GNE Y+KG F EALS+YD+AI+++P NAA+R
Sbjct: 204 ACSRVGGVGGGDSLKRAKQSGDPEELKRAGNEQYKKGHFAEALSLYDRAIAISPANAAYR 263
Query: 280 SNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQ 339
SNRAAALTGLGR+GEAV ECEEAVRLDPNY RAHQRL SL RLGQVENAR+HLC G Q
Sbjct: 264 SNRAAALTGLGRLGEAVSECEEAVRLDPNYIRAHQRLASLFRRLGQVENARKHLCFPGVQ 323
Query: 340 ADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKL 399
DP E+ RLQVVE+H+S+C DAR+V DWKS L+E DAAI+AGAD SPQL M RVEALLKL
Sbjct: 324 PDPNELQRLQVVERHISRCGDARRVRDWKSVLKEADAAISAGADSSPQLFMSRVEALLKL 383
Query: 400 HQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEK 459
HQ+EDAESSL ++PK+ ST S QT+FFGMLSEAY+ F+ AQIEMALGRFENAVTAAEK
Sbjct: 384 HQIEDAESSLFSVPKLHQSTNSCLQTKFFGMLSEAYSHFIHAQIEMALGRFENAVTAAEK 443
Query: 460 AGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCN 519
AGQID RNVEVAVLLNNV+LVARAR RGNDLFKSER+TEAC AYGEGL+ DPSNSVLYCN
Sbjct: 444 AGQIDARNVEVAVLLNNVRLVARARTRGNDLFKSERYTEACSAYGEGLKLDPSNSVLYCN 503
Query: 520 RAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELP 579
RAACWFKLG WERS+ED NQALLIQP YTKALLRRAASNSKLEKW +AVRD+EVLR LP
Sbjct: 504 RAACWFKLGVWERSIEDCNQALLIQPTYTKALLRRAASNSKLEKWEEAVRDYEVLRTVLP 563
Query: 580 DDNEIAESLFHAQVSLKKSRGEEVYNMKFGGEVEEVSSLEQFRAAVSLPGVSVVHFKSAS 639
DDNE+AESLFHAQV+LKKSRGEEV+N+KFGGEVEEVSSL+QFRAAVS PGV+VVHFK+AS
Sbjct: 564 DDNEVAESLFHAQVALKKSRGEEVHNLKFGGEVEEVSSLDQFRAAVSFPGVTVVHFKAAS 623
Query: 640 NLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKEIVC 699
+L CKQISP+V+ LC RYPSINFLKV+++ESP +A ENVRIVPTFKIYK+G+R+KEI+
Sbjct: 624 DLQCKQISPFVDILCRRYPSINFLKVNLEESPAIADTENVRIVPTFKIYKSGNRVKEIIS 683
Query: 700 PSRDMLEHSVRHYSF 714
P+RDMLEHSVR+YS
Sbjct: 684 PTRDMLEHSVRYYSL 698
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356544082|ref|XP_003540484.1| PREDICTED: TPR repeat-containing thioredoxin TTL1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 947 bits (2449), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 494/716 (68%), Positives = 572/716 (79%), Gaps = 44/716 (6%)
Query: 17 ITELGFHNLSFCD---DALSCE--------ANKPDFRELDLGSPVSPLRT-RPSGLTATS 64
++E+ + +F D DAL+C+ NKPDFRELDLGSPVSPLRT R +++S
Sbjct: 9 VSEVVGIDATFADRFRDALTCDDGSNNNNNINKPDFRELDLGSPVSPLRTTRGPAASSSS 68
Query: 65 TTTTTTTSSSSSSSGSVSGQTRLNPVNKRHDSIPNSHSGELSGSSETSPTAPTRKPGHAR 124
+++ + + + + S Q N H N++SGELSGSSE SPTA RKPGH R
Sbjct: 69 SSSGSFSGRTGPTRKPESAQNNSNTNTHTHSLSNNNNSGELSGSSENSPTA--RKPGHRR 126
Query: 125 SDSGSVSVSGHPLIYSGQSSHQSSVSSPPPNVLPTGNICPSGKILKTGIGLT-SNRSSRT 183
SDSGS V PLIYSGQ++ +SP NVLPTGNICPSGKILK G+ S+R+SR+
Sbjct: 127 SDSGSALV---PLIYSGQTA-----TSPAMNVLPTGNICPSGKILKAGMMANRSSRTSRS 178
Query: 184 DTLGSGMGHYGHGSIMRGG-----SNHIVGGGSATSVKSGGSLAVGPENANVNRNRGGIC 238
D LGSGMG+YGHGSIMRGG ++ GGG +VK GG +
Sbjct: 179 DVLGSGMGNYGHGSIMRGGGKVEPASSRGGGGGNETVKKGGH----------------VQ 222
Query: 239 GGDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKE 298
D EELKR+GNE Y++G F +ALS+YD+AI+++P +AA+RSNRAAALTGLGR+GE+V+E
Sbjct: 223 SVDPEELKRLGNECYKRGNFADALSLYDRAIAMSPASAAYRSNRAAALTGLGRLGESVRE 282
Query: 299 CEEAVRLDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKC 358
CE AVRLDPNY RAHQRL SL +RLGQVENAR+HLC G Q +P+E+ RLQVVEKH+SKC
Sbjct: 283 CEVAVRLDPNYGRAHQRLASLFLRLGQVENARKHLCYPGMQPEPSEMQRLQVVEKHISKC 342
Query: 359 TDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPS 418
D R+VG+WKS LRE DAA+AAGAD SPQL MCR EA LKLHQ++DAES L +IPK E
Sbjct: 343 GDVRRVGEWKSVLREVDAAVAAGADSSPQLFMCRAEAFLKLHQIDDAESILLSIPKSELQ 402
Query: 419 TVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVK 478
SSSQ RFFGMLSEAY++FVRAQIEMALGRFENAVTAAEKA QID RNVEVAVLLNNV+
Sbjct: 403 INSSSQARFFGMLSEAYSYFVRAQIEMALGRFENAVTAAEKACQIDSRNVEVAVLLNNVR 462
Query: 479 LVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSN 538
+VARAR RGNDLFKSER+TEAC AYGEGLR DPSNSVLYCNRAACWFKLGQWE+S+EDSN
Sbjct: 463 MVARARVRGNDLFKSERYTEACSAYGEGLRLDPSNSVLYCNRAACWFKLGQWEQSIEDSN 522
Query: 539 QALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAESLFHAQVSLKKS 598
QAL IQPNYTKALLRRAASNSKLE+W +AV+D+E+LRRELP+DNE+AESLFHAQV+LKKS
Sbjct: 523 QALHIQPNYTKALLRRAASNSKLERWEEAVKDYEILRRELPNDNEVAESLFHAQVALKKS 582
Query: 599 RGEEVYNMKFGGEVEEVSSLEQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYP 658
RGEEVYN+KFGGEVEEVS LEQFRAA+SLPGVSVVHF+ ASNL CKQI P+V TLCGRYP
Sbjct: 583 RGEEVYNLKFGGEVEEVSGLEQFRAAISLPGVSVVHFEVASNLQCKQIWPFVNTLCGRYP 642
Query: 659 SINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKEIVCPSRDMLEHSVRHYSF 714
SINFLKVDI +SP VA AENVRIVPTFKIYKNGSR+KEIVCPSRDMLEHSVRHYSF
Sbjct: 643 SINFLKVDIQQSPTVATAENVRIVPTFKIYKNGSRVKEIVCPSRDMLEHSVRHYSF 698
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356546820|ref|XP_003541820.1| PREDICTED: TPR repeat-containing thioredoxin TTL1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 946 bits (2446), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 505/715 (70%), Positives = 573/715 (80%), Gaps = 48/715 (6%)
Query: 17 ITELGFHNLSFCD---DALSCE----ANKPDFRELDLGSPVSPLRTRPSGLTATSTTTTT 69
++E+ + +F D DAL+C+ NKPDFRELDLGSPVSPLRT T +
Sbjct: 9 VSEVVGIDATFSDRFRDALTCDDNNNINKPDFRELDLGSPVSPLRT-------TRGPAAS 61
Query: 70 TTSSSSSSSGSVSGQTRLNPVNKRHDSIPNSH-------SGELSGSSETSPTAPTRKPGH 122
++SSSS S +G TR P + +++S N+H SGELSGSSE SPTA RKPGH
Sbjct: 62 SSSSSSGSFSGRTGPTR-KPESAQNNSNTNTHIHSNNNNSGELSGSSENSPTA--RKPGH 118
Query: 123 ARSDSGSVSVSGHPLIYSGQSSHQSSVSSPPPNVLPTGNICPSGKILKTGIGLTSNRSSR 182
RSDSGS V PLIYSGQ++ +SP NVLPTGNICPSGKILKTG +T NRSSR
Sbjct: 119 TRSDSGSAPV---PLIYSGQTA-----TSPVMNVLPTGNICPSGKILKTG--MTPNRSSR 168
Query: 183 T---DTLGSGMGHYGHGSIMRGGSNHIVGGGSATSVKSGGSLAVGPENANVNRNRGGICG 239
T D LGSGMG+YGHGSIMRGG G A + GS G N V R G +
Sbjct: 169 TSRSDVLGSGMGNYGHGSIMRGG-------GKAEPASTRGS---GGGNEMVKRG-GHVQS 217
Query: 240 GDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKEC 299
D EELKR+GNE Y++G F +ALS+YD+AI+++P +AA+RSNRAAALTGLGR+GEAV+EC
Sbjct: 218 VDPEELKRLGNECYKRGNFVDALSLYDRAIAMSPASAAYRSNRAAALTGLGRLGEAVREC 277
Query: 300 EEAVRLDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCT 359
EEAVRLDPNY RAHQRL SL +RLGQVENAR+HLC G Q DP+++ RLQVVEKH+SKC
Sbjct: 278 EEAVRLDPNYGRAHQRLASLFLRLGQVENARKHLCYPGMQPDPSDMQRLQVVEKHISKCG 337
Query: 360 DARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPST 419
D R+VGDWKS LRE DAA+AAGAD S QL MCR EA LKLHQ++DAES L +IPK EP T
Sbjct: 338 DVRRVGDWKSVLREVDAAVAAGADSSYQLFMCRAEAFLKLHQIDDAESILLHIPKSEPHT 397
Query: 420 VSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKL 479
SSSQ RFFGML EAY++FVRAQIEMALGRFENAVTAAEKA Q D RNVEVAVLLNNV++
Sbjct: 398 NSSSQARFFGMLCEAYSYFVRAQIEMALGRFENAVTAAEKASQNDSRNVEVAVLLNNVRM 457
Query: 480 VARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQ 539
VARAR RGNDLFKSER+TEAC AYGEGLR DPSNSVLYCNRAACWFKLGQWERS+EDSNQ
Sbjct: 458 VARARVRGNDLFKSERYTEACLAYGEGLRLDPSNSVLYCNRAACWFKLGQWERSIEDSNQ 517
Query: 540 ALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAESLFHAQVSLKKSR 599
AL IQPNYTKALLRRAASNSKLE+W +AV+D+E+LR+ELP+DNE+AESLFHAQV+LKKSR
Sbjct: 518 ALHIQPNYTKALLRRAASNSKLERWEEAVKDYEILRKELPNDNEVAESLFHAQVALKKSR 577
Query: 600 GEEVYNMKFGGEVEEVSSLEQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYPS 659
GEEV N+KFGGEVEEVS LEQFRAA+SLPGVSVVHF+ ASN CKQISP+V TLCGRYPS
Sbjct: 578 GEEVTNLKFGGEVEEVSGLEQFRAAISLPGVSVVHFEVASNSQCKQISPFVNTLCGRYPS 637
Query: 660 INFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKEIVCPSRDMLEHSVRHYSF 714
INFLKVDI +SP VA AENVRIVPTFKIYKNG R+KEIVCPS DMLEHSVRHYSF
Sbjct: 638 INFLKVDIQQSPTVATAENVRIVPTFKIYKNGCRLKEIVCPSHDMLEHSVRHYSF 692
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449528021|ref|XP_004171005.1| PREDICTED: LOW QUALITY PROTEIN: TPR repeat-containing thioredoxin TTL1-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 945 bits (2442), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 512/735 (69%), Positives = 582/735 (79%), Gaps = 58/735 (7%)
Query: 1 MSHSGKNNNTTTTATNITELGFHNLS-FCDDALSCEANKPDFRELDLGSPVSPLRTRPSG 59
MSHSG I++L F +LS D++SCE NKPDFRELDLGSPVSPLRTR
Sbjct: 1 MSHSG---------NPISDLRFDHLSDRFRDSVSCEVNKPDFRELDLGSPVSPLRTR--- 48
Query: 60 LTATSTTTTTTTSSSSSSSGSVSGQTRLNPVNKRHDSIPNSHSGELSGSSETSPTAPTR- 118
T SSSSSSSGSVSG+ NPV KR DS PN+HSGELSGSSE+SPTA
Sbjct: 49 ---HQTGGGPAASSSSSSSGSVSGRNGPNPVAKRSDSGPNNHSGELSGSSESSPTAAESL 105
Query: 119 ---------KPGHARSDSGSVSVSGHPLIYSGQSSHQSSVSSPPPNVLPTGNICPSGKIL 169
K GH RSDS S HPLIYSGQS QSSV+SP NVLPTGNICPSG+IL
Sbjct: 106 RSIGTPKNFKSGHNRSDSAS----NHPLIYSGQS--QSSVTSPS-NVLPTGNICPSGRIL 158
Query: 170 KTGIGLTSNRSSRTDTLGSGMGHYGHGSIMRGGSNHIVGGGSATSVKSGGSLAVGPENAN 229
K + ++NRSSRTD LGSG G+YGHGSIMRG +GG VK+G ++ +N
Sbjct: 159 KPSMP-STNRSSRTDVLGSGSGNYGHGSIMRG-----LGG-----VKTGAVESI----SN 203
Query: 230 VNRNRGGICGGDA----------EELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFR 279
GG+ GGD+ EELKR GNE Y+KG F EALS+YD+AI+++P NAA+R
Sbjct: 204 ACSRVGGVGGGDSLKRAKQSGDPEELKRAGNEQYKKGHFAEALSLYDRAIAISPANAAYR 263
Query: 280 SNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQ 339
SNRAAALTGLGR+GEAV ECEEAVRLDPNY RAHQRL SL RLGQVENAR+HLC G Q
Sbjct: 264 SNRAAALTGLGRLGEAVSECEEAVRLDPNYIRAHQRLASLFRRLGQVENARKHLCFPGVQ 323
Query: 340 ADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKL 399
DP E+ RLQVVE+H+S+C DAR+V DWKS L+E DAAI+AGAD SPQL M RVEALLKL
Sbjct: 324 PDPNELQRLQVVERHISRCGDARRVRDWKSVLKEADAAISAGADSSPQLFMSRVEALLKL 383
Query: 400 HQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEK 459
HQ+EDAESSL ++PK+ ST S QT+ FGMLSEAY+ F+ AQIEMALGRFENAVTAAEK
Sbjct: 384 HQIEDAESSLFSVPKLHQSTNSCLQTKXFGMLSEAYSHFIHAQIEMALGRFENAVTAAEK 443
Query: 460 AGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCN 519
AGQID RNVEVAVLLNNV+LVARAR RGNDLFKSER+TEAC AYGEGL+ DPSNSVLYCN
Sbjct: 444 AGQIDARNVEVAVLLNNVRLVARARTRGNDLFKSERYTEACSAYGEGLKLDPSNSVLYCN 503
Query: 520 RAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELP 579
RAACWFKLG WERS+ED NQALLIQP YTKALLRRAASNSKLEKW +AVRD+EVLR LP
Sbjct: 504 RAACWFKLGVWERSIEDCNQALLIQPTYTKALLRRAASNSKLEKWEEAVRDYEVLRTVLP 563
Query: 580 DDNEIAESLFHAQVSLKKSRGEEVYNMKFGGEVEEVSSLEQFRAAVSLPGVSVVHFKSAS 639
DDNE+AESLFHAQV+LKKSRGEEV+N+KFGGEVEEVSSL+QFRAAVS PGV+VVHFK+AS
Sbjct: 564 DDNEVAESLFHAQVALKKSRGEEVHNLKFGGEVEEVSSLDQFRAAVSFPGVTVVHFKAAS 623
Query: 640 NLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKEIVC 699
+L CKQISP+V+ LC RYPSINFLKV+++ESP +A ENVRIVPTFKIYK+G+R+KEI+
Sbjct: 624 DLQCKQISPFVDILCRRYPSINFLKVNLEESPAIADTENVRIVPTFKIYKSGNRVKEIIS 683
Query: 700 PSRDMLEHSVRHYSF 714
P+RDMLEHSVR+YS
Sbjct: 684 PTRDMLEHSVRYYSL 698
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255566591|ref|XP_002524280.1| Small glutamine-rich tetratricopeptide repeat-containing protein A, putative [Ricinus communis] gi|223536471|gb|EEF38119.1| Small glutamine-rich tetratricopeptide repeat-containing protein A, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 935 bits (2417), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 494/717 (68%), Positives = 555/717 (77%), Gaps = 80/717 (11%)
Query: 1 MSHSGKNNNTTTTATNITELGFHNLS--FCDDALSCEANKPDFRELDLGSPVSPLRTRPS 58
MSHSG I E+G +L+ D + S EANKPDFRELDLGSPVSPLRTR
Sbjct: 1 MSHSG---------NPIGEVGLDSLTDQLRDSSCSLEANKPDFRELDLGSPVSPLRTR-- 49
Query: 59 GLTATSTTTTTTTSSSSSSSGSVSGQTRLNPVNKRHDSIPNSHSGELSGSSETSPTAPTR 118
GL T+TTTTTTT+SSSSSS + TR P H + ++HSGELS ++ P+
Sbjct: 50 GLNTTTTTTTTTTTSSSSSSSGSASGTRNGP----HPVLKSNHSGELSETTSIRTPKPS- 104
Query: 119 KPGHARSDSGSVSVSGHPLIYSGQSSHQSSVSSPPP-NVLPTGNICPSGKILKTGIGLTS 177
+RSD PLIYSG S QSSV+SP P NVLPTGNICPSGKILKTG+G+
Sbjct: 105 ----SRSD---------PLIYSGSGS-QSSVNSPAPMNVLPTGNICPSGKILKTGMGM-G 149
Query: 178 NRSSRTDTLGSGMGHYGHGSIMRGGSNHIVGGGSATSVKSGGSLAVGPENANVNRNRGGI 237
+RSS++D LGSG G
Sbjct: 150 HRSSKSDVLGSGTGRML------------------------------------------- 166
Query: 238 CGGDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVK 297
D EE+K+ GNE+Y+KG FGEAL +YD+AI + P NAA+RSNRAAAL GLGR+ EAVK
Sbjct: 167 ---DPEEVKKAGNEMYKKGNFGEALVLYDRAIGMVPGNAAYRSNRAAALMGLGRVAEAVK 223
Query: 298 ECEEAVRLDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSK 357
ECEEAVRLDPNYWRAHQRLGSL RLGQVENARRHL + G D E+ +LQ++EKHL+K
Sbjct: 224 ECEEAVRLDPNYWRAHQRLGSLFNRLGQVENARRHLYIPGHHTDHFELQKLQLIEKHLNK 283
Query: 358 CTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEP 417
C+DARKV DW++ALRE DAAI AGAD+SPQL +CR EALLKLHQLEDAES LSNIPK+EP
Sbjct: 284 CSDARKVNDWRNALREADAAITAGADYSPQLFICRAEALLKLHQLEDAESCLSNIPKLEP 343
Query: 418 STVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNV 477
T S SQ++FFGMLSEAY+F VRAQIEMALGRFENA+TAAEKA IDPRNVEVAVLLNNV
Sbjct: 344 YTNSCSQSKFFGMLSEAYSFLVRAQIEMALGRFENALTAAEKAAHIDPRNVEVAVLLNNV 403
Query: 478 KLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDS 537
+LV RARARGNDLFKSERFTEAC AYGEGLR DPSNSVLYCNRAACWFKLG WERS++D
Sbjct: 404 RLVTRARARGNDLFKSERFTEACSAYGEGLRLDPSNSVLYCNRAACWFKLGVWERSIDDC 463
Query: 538 NQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAESLFHAQVSLKK 597
NQAL IQPNYTKALLRRAASNSKLE+WADAVRD+EVLR+ELPDDNE+AESLFHAQV+LKK
Sbjct: 464 NQALRIQPNYTKALLRRAASNSKLERWADAVRDYEVLRKELPDDNEVAESLFHAQVALKK 523
Query: 598 SRGEEVYNMKFGGEVEEVSSLEQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRY 657
SRGEEVYNMKFGGEVEE+ LEQFRAA+SLPGVSVVHFKS+SNLHCKQISP+V+ LCGRY
Sbjct: 524 SRGEEVYNMKFGGEVEEILGLEQFRAAISLPGVSVVHFKSSSNLHCKQISPFVDALCGRY 583
Query: 658 PSINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKEIVCPSRDMLEHSVRHYSF 714
PSINFLKVDI SP VA+AEN+RIVPTFKIYKNGSR+KEIVCPS DMLEHSVRHYSF
Sbjct: 584 PSINFLKVDIGNSPAVANAENIRIVPTFKIYKNGSRVKEIVCPSHDMLEHSVRHYSF 640
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356577383|ref|XP_003556806.1| PREDICTED: TPR repeat-containing thioredoxin TTL1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 860 bits (2223), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 463/720 (64%), Positives = 538/720 (74%), Gaps = 50/720 (6%)
Query: 1 MSHSGKNNNTTTTATNITELGFHNLSFCDDALSCEANKPDFRELDLGSPVSPLRTRPSGL 60
MSHS K ++ TE +LS DD NKPDFRELDLGSPVS LR R
Sbjct: 1 MSHSRK---PVSSELGFTERFRDSLSCSDD----NTNKPDFRELDLGSPVSTLRPRHYHS 53
Query: 61 TATSTTTTTTTSSSSSSSGSVSGQTRLNPVNKRHDSIPNSHSGELSGSSETSPTAPTRKP 120
T+T++T+T++SS S+ N V+KR SHSGELSGSSET+ KP
Sbjct: 54 APTTTSSTSTSTSSGSTGSGSGRSGNNNAVSKR------SHSGELSGSSETNSPTRVSKP 107
Query: 121 GHARSDSGSVSVSGHPLIYSGQSSHQSSVSSPPPNVLPTGNICPSGKILKTGIG-LTSNR 179
GH RS+SG S SS ++V+SPP +VLP GNICPSG++LK + +R
Sbjct: 108 GHRRSNSGQSQRS------PSSSSSSAAVNSPPLSVLPAGNICPSGRVLKAATAAVAPSR 161
Query: 180 SSRTDTLGSGMGHYGHGSIMRGGSNHI-----VGGGSATSVKSGGSLAVGPENANVNRNR 234
SSR+D LGSG G+YGHGSIMRGG + G SA V
Sbjct: 162 SSRSDVLGSGTGNYGHGSIMRGGKGGGGGDVRIAGDSAKRV------------------- 202
Query: 235 GGICGGDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGE 294
D EE+KRMGN Y++G F EAL +YD+AI+++P NAA+RSNRAAALTGLGR+ E
Sbjct: 203 ------DPEEVKRMGNAEYKRGHFAEALCLYDRAIAMSPGNAAYRSNRAAALTGLGRLPE 256
Query: 295 AVKECEEAVRLDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKH 354
AV+ CEEAV LDPNY RAHQRL L +RLGQVE++R+ LC G Q DP E+ +LQ+VEKH
Sbjct: 257 AVRACEEAVVLDPNYGRAHQRLAMLFLRLGQVEDSRKRLCYPGLQPDPAELQKLQIVEKH 316
Query: 355 LSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPK 414
++KC D R++ DWKS LRE DAA+AAGAD QL MCR EALLK HQ++DAES LS IPK
Sbjct: 317 INKCGDVRRIRDWKSVLREVDAAVAAGADSCVQLFMCRAEALLKQHQMDDAESCLSQIPK 376
Query: 415 IEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLL 474
EP S SQ RFFGM SEAY FFVRAQIEMA GRFENAVTAAEKA QIDPRNVEVAVLL
Sbjct: 377 SEPRPGSLSQARFFGMFSEAYCFFVRAQIEMAFGRFENAVTAAEKASQIDPRNVEVAVLL 436
Query: 475 NNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSV 534
NNV++VARAR RGNDLFKSERFTEAC AYGEGLR DPSNSVLYCNRAACWFKLGQWERS+
Sbjct: 437 NNVRMVARARLRGNDLFKSERFTEACSAYGEGLRLDPSNSVLYCNRAACWFKLGQWERSI 496
Query: 535 EDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAESLFHAQVS 594
ED NQAL I PNYTKA+LRRAASNSKLE+W +AV D+E+LRRELPDDNE+AE+LFHAQV+
Sbjct: 497 EDCNQALCILPNYTKAILRRAASNSKLERWEEAVTDYELLRRELPDDNEVAENLFHAQVA 556
Query: 595 LKKSRGEEVYNMKFGGEVEEVSSLEQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLC 654
LKKSRGEEV+N+KFGGEVE++S LEQFRAA+SLPGVSVV F++ASN+ CKQISP++ TLC
Sbjct: 557 LKKSRGEEVHNLKFGGEVEDISGLEQFRAAISLPGVSVVLFETASNMQCKQISPFMNTLC 616
Query: 655 GRYPSINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKEIVCPSRDMLEHSVRHYSF 714
R+PSINFLKVDI SP VA AENVR+VPTFKIYKNGSR+KEI+CPS DMLEHS+RHYS
Sbjct: 617 SRHPSINFLKVDIQTSPAVAAAENVRVVPTFKIYKNGSRVKEIICPSHDMLEHSIRHYSL 676
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356514583|ref|XP_003525985.1| PREDICTED: TPR repeat-containing thioredoxin TTL1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 854 bits (2206), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 468/715 (65%), Positives = 543/715 (75%), Gaps = 38/715 (5%)
Query: 1 MSHSGKNNNTTTTATNITELGFHNLSFCDDALSCEANKPDFRELDLGSPVSPLRTRPSGL 60
MSHSGK ++ +TE +LS DD NKPDFRELDL SPVS LR R
Sbjct: 1 MSHSGKK--PVSSELGLTERFRDSLSCSDD------NKPDFRELDLSSPVSTLRPRQHHS 52
Query: 61 TATSTTTTTTTSSSSSSSGSVSGQTRLNPVNKRHDSIPNSHSGELSGSSETSPTAPTRKP 120
T+T++++T++SS S+ N V+KR SHSGELSGSSET+ KP
Sbjct: 53 APTTTSSSSTSTSSGSTGSGSGRNGNNNAVSKR------SHSGELSGSSETNSPTRVSKP 106
Query: 121 GHARSDSGSVSVSGHPLIYSGQSSHQSSVSSPPPNVLPTGNICPSGKILKTGIG-LTSNR 179
GH RS+SG S SS S+V+SPP NVLP GNICPSG++LK + +R
Sbjct: 107 GHRRSNSGQSQRS--------PSSSSSAVNSPPLNVLPAGNICPSGRVLKAATAAVAPSR 158
Query: 180 SSRTDTLGSGMGHYGHGSIMRGGSNHIVGGGSATSVKSGGSLAVGPENANVNRNRGGICG 239
SSR+D LGSG G+YGHGSIMRGG GGG V+ G A G
Sbjct: 159 SSRSDVLGSGTGNYGHGSIMRGGKGGGGGGGGGGDVRIAGESAKGV-------------- 204
Query: 240 GDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKEC 299
D EE+KR+GNE Y++G F EAL +YD+AI+++P NAA+RSNRAAALTGLGR+ EAVK C
Sbjct: 205 -DPEEVKRIGNEEYKRGHFVEALCLYDRAIAMSPGNAAYRSNRAAALTGLGRLPEAVKAC 263
Query: 300 EEAVRLDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCT 359
EEAV LDPNY RAHQRL L +RLGQVE+AR+HLC G Q DP E+ +LQ+VEKH++KC
Sbjct: 264 EEAVGLDPNYGRAHQRLAMLFLRLGQVEDARKHLCYPGLQLDPAELQKLQIVEKHINKCG 323
Query: 360 DARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPST 419
D R++ DWK LRE DAA+AAGAD QL MCR EALLKLHQ++DAES +S IPK +P
Sbjct: 324 DVRRIRDWKGVLREVDAAVAAGADSCVQLFMCRAEALLKLHQIDDAESCISWIPKSKPHP 383
Query: 420 VSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKL 479
S SQ RFFGM SEAY FFVRAQIEMA GRFENAVT AEKA QIDPRNVEVAVLLNNV++
Sbjct: 384 GSLSQARFFGMFSEAYCFFVRAQIEMAFGRFENAVTTAEKASQIDPRNVEVAVLLNNVRM 443
Query: 480 VARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQ 539
VARAR RGNDLFKSERFTEAC AYGEGLR DPSNSVLYCNRAACWFKLGQWERS+ED NQ
Sbjct: 444 VARARLRGNDLFKSERFTEACSAYGEGLRLDPSNSVLYCNRAACWFKLGQWERSIEDCNQ 503
Query: 540 ALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAESLFHAQVSLKKSR 599
AL IQP+YTKA+LRRAASNSKLE+W +AV D+E+LRRELPDDNE+AE+LFHAQV+LKKSR
Sbjct: 504 ALHIQPDYTKAILRRAASNSKLERWEEAVTDYELLRRELPDDNEVAENLFHAQVALKKSR 563
Query: 600 GEEVYNMKFGGEVEEVSSLEQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYPS 659
GEEV+N+KFGGEVE++S LEQFRAA+SLPGVSVVHF++ASNL CKQISP V TLC R PS
Sbjct: 564 GEEVHNLKFGGEVEDISGLEQFRAAISLPGVSVVHFETASNLQCKQISPLVNTLCSRNPS 623
Query: 660 INFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKEIVCPSRDMLEHSVRHYSF 714
INFLKV+I SP VA AENVR+VPTFKIYKNGS++KEI+CPS DMLEHS+RHYS
Sbjct: 624 INFLKVNIQTSPAVAAAENVRVVPTFKIYKNGSQVKEIICPSHDMLEHSIRHYSL 678
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359493606|ref|XP_002283097.2| PREDICTED: TPR repeat-containing thioredoxin TTL1-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 852 bits (2202), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 471/725 (64%), Positives = 550/725 (75%), Gaps = 80/725 (11%)
Query: 1 MSHSGKNNNTTTTATNITELGFHNLS-FCDDALSCEANKPDFRELDLGSPVSPLRTRPSG 59
MSHSGK ++E+G ++ + L+C+ NKPDF+ELDLGSPVSPLRTR SG
Sbjct: 1 MSHSGKP---------MSEVGLGAVADRFRETLNCDNNKPDFKELDLGSPVSPLRTRRSG 51
Query: 60 LTATSTTTTTTTSSSSSSSGSVSGQTRLNPVNKRHDSIPNSHSGELSGSSETSPTAPTR- 118
+ TTT+++SSSS S + N + KR D N+HSGELSGSSE+SPTA
Sbjct: 52 PAGSGVTTTSSSSSSSGSVSCRNAN---NQLAKRADGAGNNHSGELSGSSESSPTAAESV 108
Query: 119 ---------KPGHARSDSGSVSVSGHPLIYSGQSSHQSSVSSPPPNVLPTGNICPSGKIL 169
KPGH RSDSG HPLIYSG S V+SP NV PTGNICPSGKIL
Sbjct: 109 RSGGASRNFKPGHGRSDSGG----AHPLIYSGGGS----VNSPSVNVFPTGNICPSGKIL 160
Query: 170 KTGIGLTSNRSSRTDTLGSGMGHYGHGSIMRGGSNHIVGGGSATSVKSGGSLAVGPENAN 229
KTG+ +NRSSR+D L G G S+
Sbjct: 161 KTGM---ANRSSRSDVL---------------------GSGMGKSL-------------- 182
Query: 230 VNRNRGGICGGDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGL 289
D EE+K+ GN+ Y++G F EALS YD+AI+L+P NAA+ SNRAAALTGL
Sbjct: 183 -----------DPEEVKQAGNDQYKRGHFREALSFYDRAIALSPGNAAYHSNRAAALTGL 231
Query: 290 GRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQ 349
R+ EAV+ECEEAVRLDP YWRAHQRL SL RLGQVENARRHL + GQQ DP E+ +L
Sbjct: 232 HRLPEAVRECEEAVRLDPGYWRAHQRLASLYRRLGQVENARRHLFVPGQQPDPAELQKLL 291
Query: 350 VVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSL 409
VEKHLSKC+DAR++GDW+SALREGDAAIAAGAD SPQ+ CRVEA LKLHQL+DAES+L
Sbjct: 292 EVEKHLSKCSDARRIGDWRSALREGDAAIAAGADSSPQIFTCRVEAHLKLHQLDDAESNL 351
Query: 410 SNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVE 469
S IPK EPS SSSQ +FFGMLSEAY FV+AQIEMALGRFENAVTA EKAGQIDPRNVE
Sbjct: 352 SYIPKSEPSGQSSSQAKFFGMLSEAYLHFVQAQIEMALGRFENAVTAVEKAGQIDPRNVE 411
Query: 470 VAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQ 529
VAVLLNNV++VARARARGNDLFKSERFTEAC AYGEGLR DPSNSVLYCNRAAC++KLG
Sbjct: 412 VAVLLNNVRMVARARARGNDLFKSERFTEACAAYGEGLRLDPSNSVLYCNRAACYYKLGM 471
Query: 530 WERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAESLF 589
WERSV+D NQAL IQPNY KALLRRAAS SKLE+W DAVRD+E+LRRELP+DN++AESLF
Sbjct: 472 WERSVDDCNQALYIQPNYMKALLRRAASYSKLERWVDAVRDYELLRRELPNDNDVAESLF 531
Query: 590 HAQVSLKKSRGEEVYNMKFGGEVEEVSSLEQFRAAVSLPGVSVVHFKSASNLHCKQISPY 649
HAQV+LKKSRGEEVYNMKFGGEVE+VSSLEQF++A+S PGVS+V FK+A+N +QISP+
Sbjct: 532 HAQVALKKSRGEEVYNMKFGGEVEDVSSLEQFKSAISSPGVSIVLFKAATNPQSEQISPF 591
Query: 650 VETLCGRYPSINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKEIVCPSRDMLEHSV 709
V+TLCGRYPS++FLKVD+++SP +A ENVRI+PTFKIYKNGSR+KEI+CP+R++LE SV
Sbjct: 592 VDTLCGRYPSLSFLKVDVEQSPAIASVENVRILPTFKIYKNGSRVKEIICPTREVLESSV 651
Query: 710 RHYSF 714
RHY F
Sbjct: 652 RHYGF 656
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225446591|ref|XP_002276519.1| PREDICTED: TPR repeat-containing thioredoxin TTL1-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 831 bits (2146), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 444/714 (62%), Positives = 522/714 (73%), Gaps = 44/714 (6%)
Query: 30 DALSCEANKPDFRELDLGSPVSPLRTRPSGLTATSTTTTTTTSSSSSSSGSV-------S 82
D LSCE+NKPDFRELDLGSPVSPL TR SG + ++ SSS S +
Sbjct: 12 DTLSCESNKPDFRELDLGSPVSPLMTRGSGGGGGGSGGGGGGPAAMSSSSSSSGSVSGKT 71
Query: 83 GQTRLNPVNKRHDSIPNSHSGELSGSSETSP--------TAPTR--KPGHARSDSGSVSV 132
G T+L KR D N++SGELS SSETSP A TR +PGH RS S
Sbjct: 72 GGTQLV---KRPDGSLNNYSGELSASSETSPYASETLRSVAGTRNSRPGHRRSSS----- 123
Query: 133 SGHPLIYSGQS------------SHQSSVSSPPPNVLPTGNICPSGKILKTGIGLTSNRS 180
+G PLIYSG S S S+P NVLP+GNICPSGKILK G+ S S
Sbjct: 124 AGPPLIYSGASFVSSSNGGCSGGGASSISSNPNANVLPSGNICPSGKILKAGMPCRS--S 181
Query: 181 SRTDTLGSGMGHYGHGSIMRGGSNHIVGGGSATSVKSGGSLAVGPENANVNRNRGGICGG 240
R+D LGSG GHYGHGSIMRGG+ + S V G++ E+ V R G
Sbjct: 182 GRSDVLGSGTGHYGHGSIMRGGAK-LSSPRSIADVNMTGNIQFAGESVMVKRAMGS---S 237
Query: 241 DAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECE 300
D EE+K+ GNELYR+G F EALS+YD+AISL+P NAA+RSNRAAALT LG++ EAVKECE
Sbjct: 238 DPEEVKKAGNELYRRGSFTEALSLYDRAISLSPDNAAYRSNRAAALTALGKLAEAVKECE 297
Query: 301 EAVRLDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTD 360
EAVRLDP Y RAHQRL SL +RLGQVENARRHL L GQ DP+E+ +L +EKHL++C D
Sbjct: 298 EAVRLDPGYGRAHQRLASLYLRLGQVENARRHLFLPGQPPDPSELQKLLSLEKHLNRCAD 357
Query: 361 ARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTV 420
ARK+GDWKSALRE DAAIA GAD SPQL CR EALLKLHQ+EDA+S LS+IPK E +
Sbjct: 358 ARKIGDWKSALRECDAAIAGGADSSPQLISCRAEALLKLHQIEDADSCLSSIPKFEHYSP 417
Query: 421 SSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLV 480
S S T+F M++EAY +VRAQ+EMALGRFENAV AAEKAG ID NVEVA LLNNVKLV
Sbjct: 418 SCS-TKFVCMIAEAYVLYVRAQVEMALGRFENAVAAAEKAGLIDYSNVEVAKLLNNVKLV 476
Query: 481 ARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQA 540
ARARARGN+LF S RF+EAC AYGEGL++D SNSVLYCNRA CW KLG WE+SVED N A
Sbjct: 477 ARARARGNELFSSGRFSEACSAYGEGLKYDTSNSVLYCNRAVCWSKLGLWEKSVEDCNHA 536
Query: 541 LLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAESLFHAQVSLKKSRG 600
L IQPNYTKALLRRA SN KL +WA+AV+D+EVLRRELP D E+AESL AQ +L KS
Sbjct: 537 LKIQPNYTKALLRRAVSNGKLGQWAEAVKDYEVLRRELPGDIEVAESLSQAQAALSKSWE 596
Query: 601 EEVYNMKFGGEVEEVSSLEQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYPSI 660
EE +++KFGGEVEEVS ++QF+AA+S PGVSVVHFK ASN C Q+SP ++ LC +YPSI
Sbjct: 597 EETHSVKFGGEVEEVSGVDQFKAAISSPGVSVVHFKVASNYQCGQVSPIMDKLCVQYPSI 656
Query: 661 NFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKEIVCPSRDMLEHSVRHYSF 714
FLKVD++ESP VA AE+++ VPTFKIYKNG ++ E++CPS LE+SVR+YS
Sbjct: 657 KFLKVDVEESPAVAKAESIKSVPTFKIYKNGGKVNEMICPSHQYLEYSVRYYSL 710
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 714 | ||||||
| TAIR|locus:2009590 | 699 | TTL1 "tetratricopeptide-repeat | 0.938 | 0.958 | 0.579 | 4.9e-204 | |
| TAIR|locus:2041559 | 691 | TTL3 "tetratricopetide-repeat | 0.920 | 0.950 | 0.472 | 8e-156 | |
| TAIR|locus:2076386 | 682 | TTL4 "tetratricopetide-repeat | 0.836 | 0.875 | 0.469 | 7.8e-142 | |
| TAIR|locus:2184148 | 594 | TPR13 "tetratricopeptide repea | 0.563 | 0.676 | 0.411 | 8.5e-81 | |
| TAIR|locus:2171860 | 593 | TPR14 "AT5G65160" [Arabidopsis | 0.591 | 0.711 | 0.403 | 1.4e-80 | |
| TAIR|locus:2194739 | 530 | TPR12 "AT1G78120" [Arabidopsis | 0.516 | 0.696 | 0.405 | 4.1e-65 | |
| DICTYBASE|DDB_G0288639 | 539 | DDB_G0288639 "TPR repeat-conta | 0.5 | 0.662 | 0.227 | 3.8e-23 | |
| UNIPROTKB|F1NPY5 | 469 | DNAJC7 "Uncharacterized protei | 0.5 | 0.761 | 0.274 | 7.1e-23 | |
| UNIPROTKB|F1NPY6 | 486 | DNAJC7 "Uncharacterized protei | 0.5 | 0.734 | 0.274 | 8.7e-23 | |
| MGI|MGI:1928373 | 494 | Dnajc7 "DnaJ (Hsp40) homolog, | 0.498 | 0.720 | 0.273 | 1.2e-22 |
| TAIR|locus:2009590 TTL1 "tetratricopeptide-repeat thioredoxin-like 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1974 (699.9 bits), Expect = 4.9e-204, P = 4.9e-204
Identities = 402/694 (57%), Positives = 475/694 (68%)
Query: 29 DDALSCEANKPDFRELDLGSPVSPLRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLN 88
D +L+ E NKPDFRELDLGSPVSPLR
Sbjct: 20 DSSLTSEINKPDFRELDLGSPVSPLRSQPRGLTTTTTTTTTSSSSSSSSGSVTGRIKHA- 78
Query: 89 PVNKRHDSIPNSHSGELSGSSETSPTAPTRKPGHARSDSGSVSVSGH--PLIYXXXXXXX 146
PV R +S+ S S SG++ P RSDS + S S H PL+
Sbjct: 79 PVIGRSNSV-RSQSNSSSGNNNLRP----------RSDSATTSSSSHSQPLLSSSSSSAT 127
Query: 147 XXXXXXXXNVLPTGNICPSGKILKTGIGLTSNRSSRTDTLGSGMGHYGHGSIMRGGSNHI 206
NVLPTGNICPSGKI TG +T +RS R+D LGSG G YGHGSIMRGG
Sbjct: 128 SPAPTSPANVLPTGNICPSGKIQITG--MTQSRS-RSDVLGSGTGTYGHGSIMRGGGISP 184
Query: 207 V-----GGGSATSVKSGGSLAVGPENANVNRN--RGGICGGDAEELKRMGNELYRKGCFG 259
GGGS + V G S A + I G D+EE+KR+GNE+YRKG F
Sbjct: 185 AKPTNTGGGSNSPVNVGSSSRSSSTVATGETPIWKKAILGSDSEEVKRVGNEMYRKGLFN 244
Query: 260 EALSMYDKAISLXXXXXXXXXXXXXXLTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSL 319
EAL +YD+AI+L L GL RIGEAVKECE+AVR DPNY RAH RL L
Sbjct: 245 EALKLYDRAIALSPTNAAYRSNRAAALIGLSRIGEAVKECEDAVRSDPNYGRAHHRLALL 304
Query: 320 LVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIA 379
L+RLGQV +AR+HLC G+ +DP E+ +L+ VEKHL KC DAR+V DWK+ L E DAAI
Sbjct: 305 LIRLGQVNSARKHLCFLGRPSDPMELQKLEAVEKHLIKCVDARRVTDWKTVLIEADAAIV 364
Query: 380 AGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFV 439
+GADFSPQL MC+VEA LKLH+L+DA+S L +PK+EP VS SQTRF GM EAY +FV
Sbjct: 365 SGADFSPQLFMCKVEAFLKLHRLDDAQSKLLEVPKVEPFPVSCSQTRFSGMACEAYIYFV 424
Query: 440 RAQIEMALGRFENAVTAAEKAGQIDPRXXXXXXXXXXXXXXXXXRARGNDLFKSERFTEA 499
+AQIEMALGRFENAV AAEKA QIDPR RARGNDL+KSER+TEA
Sbjct: 425 KAQIEMALGRFENAVMAAEKASQIDPRCNEVAMLHNTVTLVARARARGNDLYKSERYTEA 484
Query: 500 CQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNS 559
AY EGLR DP N++LYCNRAACWFKLG WERS+ED NQAL QP+YTK LLRRAASNS
Sbjct: 485 SSAYAEGLRLDPCNAILYCNRAACWFKLGMWERSIEDCNQALRYQPSYTKPLLRRAASNS 544
Query: 560 KLEKWADAVRDFEVLRRELPDDNEIAESLFHAQVSLKKSRGEEVYNMKFGGEVEEVSSLE 619
K+E+W AV D+E L RELP D E+AESLFHAQV+LKKSRGEEV NM+FGGEVEE+ SLE
Sbjct: 545 KMERWGAAVSDYEALIRELPHDKEVAESLFHAQVALKKSRGEEVLNMEFGGEVEEIYSLE 604
Query: 620 QFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAHAENV 679
QF++A++LPGVSV+HF +AS+ CKQISP+V++LC RYPSI+FLKVDID+ P + +AENV
Sbjct: 605 QFKSAMNLPGVSVIHFSTASDHQCKQISPFVDSLCTRYPSIHFLKVDIDKCPSIGNAENV 664
Query: 680 RIVPTFKIYKNGSRMKEIVCPSRDMLEHSVRHYS 713
R+VPT KIYKNGSR+KEIVCPS+++LE+SVRHYS
Sbjct: 665 RVVPTVKIYKNGSRVKEIVCPSKEVLEYSVRHYS 698
|
|
| TAIR|locus:2041559 TTL3 "tetratricopetide-repeat thioredoxin-like 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1519 (539.8 bits), Expect = 8.0e-156, P = 8.0e-156
Identities = 322/682 (47%), Positives = 419/682 (61%)
Query: 35 EANKPDFRELDLGSPVSPLRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLNPVNKRH 94
+ NKPDFRELDLGSPVS L ++ KR
Sbjct: 29 DVNKPDFRELDLGSPVSTLMPRGSASSSAAATPTSSSGSSGSASGKPSVSSQMA---KRL 85
Query: 95 DSIPNSHSGELSGSSETSPTAPTR--KPGHARSDSGSVSVSGHPLIYXXXXXXXXXXXXX 152
D SHSGELS PT TR KPGH RS S +G PLI+
Sbjct: 86 DDAYKSHSGELSSPGSGMPTT-TRILKPGHRRSSS-----TGTPLIFSGSSFTSATSHTS 139
Query: 153 --XXNVLPTGNICPSGKILKTGIGLTSNRSSRTDTLGSGMGHYGHGSIMRGGSNHIVGGG 210
T + P+ +L G S R +T + S ++ G N+ G G
Sbjct: 140 PQGGGSGATSAVSPNTGVLPAGNICPSGRILKTG-MASRTSSRTE-TLCTGTGNY--GHG 195
Query: 211 SATSVKSGGSLAVGPENANVNRNRGGICGGDAEELKRMGNELYRKGCFGEALSMYDKAIS 270
+ V+SGG + V N G + EELKRMGN++YR+G F EALS+YD+AI
Sbjct: 196 NV--VRSGGGGGTSGKAVRVAEN-----GENPEELKRMGNDMYRRGSFSEALSLYDRAIL 248
Query: 271 LXXXXXXXXXXXXXXLTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVRLGQVENAR 330
+ LT L R+GEAVKEC EAVR+DP+Y RAHQRL SL +RLG+ ENAR
Sbjct: 249 ISPGNAAYRSNRAAALTALRRLGEAVKECLEAVRIDPSYSRAHQRLASLYLRLGEAENAR 308
Query: 331 RHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSM 390
RH+C SGQ D ++ RLQ +EKHL +C +ARK+GDWK+A++E DAAIA GAD SPQL
Sbjct: 309 RHICFSGQCPDQADLQRLQTLEKHLRRCWEARKIGDWKTAIKETDAAIANGADSSPQLVA 368
Query: 391 CRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRF 450
C+ EA L+L Q+ED++ +S IP+++ S Q + FGM+ EAY ++AQ++MALGRF
Sbjct: 369 CKAEAFLRLKQIEDSDFCVSCIPRLDHHYHSQPQVKLFGMVVEAYVLCIQAQVDMALGRF 428
Query: 451 ENAVTAAEKAGQIDPRXXXXXXXXXXXXXXXXXRARGNDLFKSERFTEACQAYGEGLRFD 510
ENAV AE+A +D R RGN+LF S RF+EAC AYG+GL+ D
Sbjct: 429 ENAVVKAERAAMLDQTNPEVVSVLNNVKMVVRARTRGNELFSSGRFSEACVAYGDGLKQD 488
Query: 511 PSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRD 570
SNSVLYCNRAACW+KLG WE+SVED N AL QP+Y KALLRRAAS KL +W DAV+D
Sbjct: 489 DSNSVLYCNRAACWYKLGLWEKSVEDCNHALKSQPSYIKALLRRAASYGKLGRWEDAVKD 548
Query: 571 FEVLRRELPDDNEIAESLFHAQVSLKKSRGEEVYNMKFGGEVEEVSSLEQFRAAVSLPGV 630
+E LRRELP D+E+AESL A+ L +R +E ++ F EVE VS+L++F+ +V+LPGV
Sbjct: 549 YEFLRRELPGDSEVAESLERAKTVLM-NRSQESKSLGFNNEVEAVSTLDKFKKSVALPGV 607
Query: 631 SVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAHAENVRIVPTFKIYKN 690
SV HFKS+SN C++ISP++ TLC RYP ++F VD++ES +A AE++R VPTFK+YKN
Sbjct: 608 SVFHFKSSSNRQCEEISPFINTLCLRYPLVHFFMVDVEESMALAKAESIRKVPTFKMYKN 667
Query: 691 GSRMKEIVCPSRDMLEHSVRHY 712
G ++KE+VCPS LE S++H+
Sbjct: 668 GDKVKEMVCPSHQFLEDSIKHF 689
|
|
| TAIR|locus:2076386 TTL4 "tetratricopetide-repeat thioredoxin-like 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1387 (493.3 bits), Expect = 7.8e-142, P = 7.8e-142
Identities = 288/614 (46%), Positives = 391/614 (63%)
Query: 100 SHSGELSGSSETSPTAPTRKPGHARSDSGSVSVSGHPLIYXXXXXXXXXXXXXXXNVLPT 159
SHSGELSG S+TSP P + + + +G PLIY +
Sbjct: 83 SHSGELSGLSQTSPVKPGSVNRNLKPGHRRSASAGTPLIYSGLGFSPVNNNNNSSRGGGS 142
Query: 160 GNICPSGKILKTGIGLTSNRSSRTDTLGSGMGHYGHGSIMRGGSNHIVGGGSATSVKSGG 219
G P+ +L TG S R +T + ++ G +N+ G +++GG
Sbjct: 143 GATSPNPGVLPTGNICPSGRILKTGM--ATRASVRPETLCTGTANY----GHGNIIRTGG 196
Query: 220 SLAVGPENANVNRNRGGICGGDAEELKRMGNELYRKGCFGEALSMYDKAISLXXXXXXXX 279
++ + + D+EE+K+ GN +YRKG + EAL++YD+AISL
Sbjct: 197 KVS--------HATKAAAEMSDSEEVKKAGNVMYRKGNYAEALALYDRAISLSPENPAYR 248
Query: 280 XXXXXXLTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQ 339
L GR+ EAVKEC EAVR DP+Y RAHQRL SL +RLG+ ENARRHLC+SGQ
Sbjct: 249 SNRAAALAASGRLEEAVKECLEAVRCDPSYARAHQRLASLYLRLGEAENARRHLCVSGQC 308
Query: 340 ADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKL 399
D ++ RLQ +EKHL CT+ARK+GDW++ + E DAAIA GAD SPQL C+ EA L+L
Sbjct: 309 PDQADLQRLQTLEKHLRLCTEARKIGDWRTVISEIDAAIANGADSSPQLVACKAEAFLRL 368
Query: 400 HQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEK 459
HQ++D++ +S+IP+++ + + FG++ +AY V+AQ++MALGRFENA+ E+
Sbjct: 369 HQIKDSDLCISSIPRLDHHHTQPPE-KLFGIVCDAYVLCVQAQVDMALGRFENAIVKVER 427
Query: 460 AGQID-PRXXXXXXXXXXXXXXXXXRARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYC 518
A ID R RGN+LF S R++EA AYG+GL+ D NSVLYC
Sbjct: 428 AMTIDHSNSPEVVSVLNNVKNVAKARTRGNELFSSGRYSEASVAYGDGLKLDAFNSVLYC 487
Query: 519 NRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRREL 578
NRAACWFKLG WE+SV+D NQAL IQP+YTKALLRRAAS KL +W DAVRD+EVLR+EL
Sbjct: 488 NRAACWFKLGMWEKSVDDCNQALRIQPSYTKALLRRAASYGKLGRWEDAVRDYEVLRKEL 547
Query: 579 PDDNEIAESLFHAQVSLKKSRGEEVYNMKFGGEVEEVSSLEQFRAAVSLPGVSVVHFKSA 638
P D+E+AESL A+ +L ++ EE + F EVEEVS+L++F+ A SLPG+SV HFKS+
Sbjct: 548 PGDSEVAESLQRARNALS-NKSEEPKYLGFNNEVEEVSTLDKFKTATSLPGISVFHFKSS 606
Query: 639 SNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKEIV 698
SN + ISP+V TLC RYP ++F KVD++ES +A AE+++ +PTFKIYK G ++KE+V
Sbjct: 607 SNRQSEAISPFVNTLCLRYPLVHFFKVDVEESLALAKAESIKKIPTFKIYKKGEKVKEMV 666
Query: 699 CPSRDMLEHSVRHY 712
CPS +LE SV H+
Sbjct: 667 CPSHQLLEDSVTHF 680
|
|
| TAIR|locus:2184148 TPR13 "tetratricopeptide repeat 13" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 811 (290.5 bits), Expect = 8.5e-81, P = 8.5e-81
Identities = 170/413 (41%), Positives = 247/413 (59%)
Query: 197 SIMRGGSNHIVGG-GSATSVKSGGSLAVGPENANVNRNRGG-ICGG-----DAEELKRMG 249
+I G + GG G +++ +V A+ N+++ G +C D E LK MG
Sbjct: 185 TIQNNGYGNTGGGYGVKKTLEEERKTSVAQIPASNNQDQSGSLCRAISTRMDPETLKIMG 244
Query: 250 NELYRKGCFGEALSMYDKAISLXXXXXXXXXXXXXXLTGLGRIGEAVKECEEAVRLDPNY 309
NE Y+ G F EAL++Y+ AIS+ LT LGRI EAV EC EA+R+DP+Y
Sbjct: 245 NEDYKNGNFAEALALYEAAISIDPKKASYRSNKSAALTALGRILEAVFECREAIRIDPHY 304
Query: 310 WRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKS 369
RAH RL +L +RLG+VEN+ H +G +AD ++ + ++V+ HL+KCT+A+++ DW +
Sbjct: 305 HRAHHRLANLYLRLGEVENSIYHFKHAGPEADQEDISKAKMVQTHLNKCTEAKRLRDWNT 364
Query: 370 ALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFG 429
++E + I GAD +PQ+ + EA LK ++ ++A+ +LS P + T+++G
Sbjct: 365 LIKETENTITTGADAAPQVYALQAEAFLKTYRHQEADDALSRCPVFD----GEMSTKYYG 420
Query: 430 MLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRXXXXXXXXXXXXXXXXXRARGND 489
+ A V AQ+ MA GRF AV A ++AG++D R+RGND
Sbjct: 421 SIGYAGFLVVWAQVHMASGRFVEAVEAIQRAGKLDGNNREVSMVLRRAQAVTAARSRGND 480
Query: 490 LFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTK 549
FK+ RF EAC AYGEGL D NSVL CNRAAC K+GQ++R+VED++ AL ++P YTK
Sbjct: 481 FFKAGRFQEACTAYGEGLDHDSRNSVLLCNRAACLSKMGQFDRAVEDTSAALAVRPGYTK 540
Query: 550 ALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAESLFHAQVSLKKSRGEE 602
A LRRA N+KL W AV D+E+LR+E P+D E+ + L AQ L K RG +
Sbjct: 541 ARLRRADCNAKLGNWESAVGDYEILRKETPEDEEVIKGLSEAQKQLVKRRGHD 593
|
|
| TAIR|locus:2171860 TPR14 "AT5G65160" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 809 (289.8 bits), Expect = 1.4e-80, P = 1.4e-80
Identities = 175/434 (40%), Positives = 250/434 (57%)
Query: 174 GLTSNRSSRTDTLGSGMGHYGHGSIMRGGSNHIVGGGSATSVKSGGSLAVGPENANVNRN 233
GL SS G+ +G+ + G N+ G + VK A
Sbjct: 166 GLVRASSSNIMLYGN-LGNLNQTGPVTAGVNY--GNNNGYGVKRTTMGAATATTTKSQDQ 222
Query: 234 RGGICGG-----DAEELKRMGNELYRKGCFGEALSMYDKAISLXXXXXXXXXXXXXXLTG 288
G +C D E LK MGNE Y+ G F EAL++YD AI++ LT
Sbjct: 223 SGSLCRAISTRMDPETLKIMGNEDYKNGNFAEALALYDAAIAIDPNKAAYRSNKSAALTA 282
Query: 289 LGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRL 348
LGRI +AV EC EA+R++P+Y RAH RLG+L +RLG+VE + H SG +AD ++ +
Sbjct: 283 LGRILDAVFECREAIRIEPHYHRAHHRLGNLYLRLGEVEKSIYHFKHSGPEADREDIAKA 342
Query: 349 QVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESS 408
+ V+ HL+KCT+A+++ DW + E I++GAD +PQ+ + EALLK H+ ++A+ +
Sbjct: 343 KTVQTHLNKCTEAKRLRDWNGLITETTNTISSGADAAPQVYALQAEALLKTHRHQEADDA 402
Query: 409 LSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRXX 468
LS P + + +S TR++G + A VRAQ+ +A GRF+ AV A ++AG++D
Sbjct: 403 LSRCPVFD---IDAS-TRYYGPVGYAGFLVVRAQVHLASGRFDEAVEAIQRAGKLDGNNR 458
Query: 469 XXXXXXXXXXXXXXXRARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLG 528
R +GN+LFKS RF EAC AYGEGL DP NSVL CNRAAC KLG
Sbjct: 459 EVIMISRRAQAVTEARFKGNELFKSGRFQEACAAYGEGLDHDPRNSVLLCNRAACRSKLG 518
Query: 529 QWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAESL 588
Q+++S+ED AL ++P Y KA LRRA N+K+EKW AV D+E+L++E P+D ++ L
Sbjct: 519 QFDKSIEDCTAALSVRPGYGKARLRRADCNAKIEKWELAVGDYEILKKESPEDEQVIRGL 578
Query: 589 FHAQVSLKKSRGEE 602
AQ L K G++
Sbjct: 579 SEAQQQLMKRSGQD 592
|
|
| TAIR|locus:2194739 TPR12 "AT1G78120" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 663 (238.4 bits), Expect = 4.1e-65, P = 4.1e-65
Identities = 151/372 (40%), Positives = 209/372 (56%)
Query: 241 DAEELKRMGNELYRKGCFGEALSMYDKAISLXXXXXXXXXXXXXXLTGLGRIGEAVKECE 300
D E LK+MGNE Y +G FG+AL Y++AIS L LGR+ EA CE
Sbjct: 158 DPETLKKMGNEEYCRGRFGQALVFYERAISADPKTPTYWSNKSAALISLGRLLEASDACE 217
Query: 301 EAVRLDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTD 360
EA+RL+P Y RAHQRL SL +RLG+VE A H +G+ + + +++ V K L +C +
Sbjct: 218 EALRLNPTYERAHQRLASLQLRLGEVEKALCHYNEAGKYTETKHIEQVEDVVKCLRRCDE 277
Query: 361 ARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTV 420
AR+ +W AL+E AI+ GAD SP++ + EALL L + E+A S K
Sbjct: 278 ARRSKEWNVALKETLFAISYGADSSPRVYALQTEALLHLQRHEEAYSVYQKGTK---RFD 334
Query: 421 SSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRXXXXXXXXXXXXXX 480
S + FG+ +Y V AQ+ +A+GRFE+AVTA+ +A ++DP
Sbjct: 335 IDSFIKIFGLSLTSYLLMVGAQVYIAVGRFEDAVTASRQAARLDPSSEEVNAVARKARAV 394
Query: 481 XXXRARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQA 540
R GN LF + +F A Y EGL DP N++L CNRAA FKL +E+++ED A
Sbjct: 395 ASARLSGNLLFNASKFEGASVVYTEGLENDPYNALLLCNRAASRFKLDLFEKAIEDCTLA 454
Query: 541 LLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAESLFHAQVSLKKSRG 600
L +QP+Y KA RRA S +KLEKW A++D+E+L E P+D E +L V KK G
Sbjct: 455 LSLQPSYRKARRRRADSYAKLEKWQHAIQDYELLMMETPEDEETRRALTEVNVRFKKQTG 514
Query: 601 EEVYNMKFGGEV 612
+V G E+
Sbjct: 515 GDVRFKGVGSEL 526
|
|
| DICTYBASE|DDB_G0288639 DDB_G0288639 "TPR repeat-containing protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 295 (108.9 bits), Expect = 3.8e-23, P = 3.8e-23
Identities = 89/391 (22%), Positives = 175/391 (44%)
Query: 241 DAEELKRMGNELYRKGCFGEALSMYDKAISLXXXXXXXX----XXXXXXLTGLGRIGEAV 296
D EE K GN +++ + +A+ Y +AI L + + +++
Sbjct: 2 DHEECKTQGNNYFKQSQYMDAIRCYTQAIELSNGTIAAYYGNRAAAYLAICTKSSLQDSI 61
Query: 297 KECEEAVRLDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPT------EVHRLQV 350
K+ +A+ L+ ++ + + R + L Q + A + + G DP E +++
Sbjct: 62 KDSLKAIELERSFIKGYTRASKAYIHLAQYDQAAS-IIVRGLVFDPRNNELLQEKNQIDS 120
Query: 351 VEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLS 410
+++ +S T + + + S+L + + ++ + ++ QL + + L++L Q A + ++
Sbjct: 121 IQRTISSLTKEKALSNPSSSLNQIENVLSQ-SKYNTQLQVLKARVLIELKQYPQASNLMT 179
Query: 411 NIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRXXXX 470
+ + + R G+ + + + +AL F+N++T DP
Sbjct: 180 TLLQEDSRNPEYLYVR--GL-----SLYYQNNFPLALQHFQNSLT-------YDPDYSES 225
Query: 471 XXXXXXXXXXXXXRARGNDLFKSERFTEACQAYGEGLRFDPS----NSVLYCNRAACWFK 526
+ GN+ F+S+ + A ++ E L DP NS LY NRAA
Sbjct: 226 RVALKRLRSIESKKKEGNEYFQSKNYQAAYDSFTEALSIDPKLETMNSQLYSNRAAALVH 285
Query: 527 LGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAE 586
L + ++ D A+ I PNY KA +RRA K E + DAVRD+E + P++ E+
Sbjct: 286 LNRISEAINDCTSAVTIDPNYGKAYIRRAQCQMKQENYEDAVRDYEKAQSLDPENGELQR 345
Query: 587 SLFHAQVSLKKSRGEEVYNM----KFGGEVE 613
++ A+++ KKS ++ Y + K GE E
Sbjct: 346 NIKEAKIAHKKSLRKDYYKILGVSKEAGETE 376
|
|
| UNIPROTKB|F1NPY5 DNAJC7 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 290 (107.1 bits), Expect = 7.1e-23, P = 7.1e-23
Identities = 110/401 (27%), Positives = 181/401 (45%)
Query: 241 DAEELKRMGNELYRKGCFGEALSMYDKAISLXXXXXXXXXXXXXXLTGLGRIGEAVKECE 300
+AE K GN Y K + EA + Y KAI L LGR EA+ + +
Sbjct: 2 EAESFKEQGNAYYAKKDYNEAYNYYTKAIDTCPNNASYYGNRAATLMMLGRFREALGDAQ 61
Query: 301 EAVRLDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQ-QADPTEVHRLQVVEKHLSKCT 359
++VRLD ++ R H R G + LG A R C + D Q + K+ S
Sbjct: 62 QSVRLDDSFVRGHLREGKCHLSLGNAMAASR--CFQRVLELDHKNTQAQQEL-KNASTVL 118
Query: 360 DARKVG--DW-KSALREGDAAIAAGADFSP---QLSMCRVEALLKLHQLEDAESSLSNIP 413
+ K+ D+ K R+ + +F+P + + + E L L + +A+S S+I
Sbjct: 119 EYEKIAEVDFEKRDFRKVVFCMDRALEFAPACHRFKILKAECLALLGRYPEAQSVASDIL 178
Query: 414 KIEPSTVSSSQTR-----FFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRXX 468
+++ + + R + + +A FFV+A + MA E A A A + +
Sbjct: 179 RMDSTNADALYVRGLCLYYEDCIEKAVQFFVQA-LRMAPDH-EKACLACRNAKALKAK-- 234
Query: 469 XXXXXXXXXXXXXXXRARGNDLFKSERFTEACQAYGEGLRFDPSN----SVLYCNRAACW 524
+ GN FK + A + Y E L DP+N + LYCNR
Sbjct: 235 ---------------KEDGNKAFKEGNYKLAYELYTEALGIDPNNIKTNAKLYCNRGTVN 279
Query: 525 FKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFE-VLRRELPDDNE 583
KL + E +++D A+ + Y KA LRRA E++ DAVRD+E V + E +++
Sbjct: 280 SKLRKLEEAIDDCTNAVKLDETYIKAYLRRAQCYMDTEQYEDAVRDYEKVYQTEKTKEHK 339
Query: 584 IAESLFHAQVSLKKSRGEEVYNMKFGGEVEEVSSLEQFRAA 624
+ L +AQ+ LKKS+ ++ Y + G V++ +S ++ + A
Sbjct: 340 --QLLKNAQMELKKSKRKDYYKI-LG--VDKNASEDEIKKA 375
|
|
| UNIPROTKB|F1NPY6 DNAJC7 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 290 (107.1 bits), Expect = 8.7e-23, P = 8.7e-23
Identities = 110/401 (27%), Positives = 181/401 (45%)
Query: 241 DAEELKRMGNELYRKGCFGEALSMYDKAISLXXXXXXXXXXXXXXLTGLGRIGEAVKECE 300
+AE K GN Y K + EA + Y KAI L LGR EA+ + +
Sbjct: 19 EAESFKEQGNAYYAKKDYNEAYNYYTKAIDTCPNNASYYGNRAATLMMLGRFREALGDAQ 78
Query: 301 EAVRLDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQ-QADPTEVHRLQVVEKHLSKCT 359
++VRLD ++ R H R G + LG A R C + D Q + K+ S
Sbjct: 79 QSVRLDDSFVRGHLREGKCHLSLGNAMAASR--CFQRVLELDHKNTQAQQEL-KNASTVL 135
Query: 360 DARKVG--DW-KSALREGDAAIAAGADFSP---QLSMCRVEALLKLHQLEDAESSLSNIP 413
+ K+ D+ K R+ + +F+P + + + E L L + +A+S S+I
Sbjct: 136 EYEKIAEVDFEKRDFRKVVFCMDRALEFAPACHRFKILKAECLALLGRYPEAQSVASDIL 195
Query: 414 KIEPSTVSSSQTR-----FFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRXX 468
+++ + + R + + +A FFV+A + MA E A A A + +
Sbjct: 196 RMDSTNADALYVRGLCLYYEDCIEKAVQFFVQA-LRMAPDH-EKACLACRNAKALKAK-- 251
Query: 469 XXXXXXXXXXXXXXXRARGNDLFKSERFTEACQAYGEGLRFDPSN----SVLYCNRAACW 524
+ GN FK + A + Y E L DP+N + LYCNR
Sbjct: 252 ---------------KEDGNKAFKEGNYKLAYELYTEALGIDPNNIKTNAKLYCNRGTVN 296
Query: 525 FKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFE-VLRRELPDDNE 583
KL + E +++D A+ + Y KA LRRA E++ DAVRD+E V + E +++
Sbjct: 297 SKLRKLEEAIDDCTNAVKLDETYIKAYLRRAQCYMDTEQYEDAVRDYEKVYQTEKTKEHK 356
Query: 584 IAESLFHAQVSLKKSRGEEVYNMKFGGEVEEVSSLEQFRAA 624
+ L +AQ+ LKKS+ ++ Y + G V++ +S ++ + A
Sbjct: 357 --QLLKNAQMELKKSKRKDYYKI-LG--VDKNASEDEIKKA 392
|
|
| MGI|MGI:1928373 Dnajc7 "DnaJ (Hsp40) homolog, subfamily C, member 7" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 289 (106.8 bits), Expect = 1.2e-22, P = 1.2e-22
Identities = 110/402 (27%), Positives = 183/402 (45%)
Query: 241 DAEELKRMGNELYRKGCFGEALSMYDKAISLXXXXXXXXXXXXXXLTGLGRIGEAVKECE 300
+AE K GN Y K + EA + Y KAI + L LGR EA+ + +
Sbjct: 27 EAESFKEQGNAYYAKKDYNEAYNYYTKAIDMCPNNASYYGNRAATLMMLGRFREALGDAQ 86
Query: 301 EAVRLDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVE--KHLSKC 358
++VRLD ++ R H R G + LG A C S Q+A + Q + K+ +
Sbjct: 87 QSVRLDDSFVRGHLREGKCHLSLGNAMAA----CRSFQRALELDHKNAQAQQEFKNANAV 142
Query: 359 TDARKVG--DW-KSALREGDAAIAAGADFSP---QLSMCRVEALLKLHQLEDAESSLSNI 412
+ K+ D+ K R+ + +F+P + + + E L L + +A+ S+I
Sbjct: 143 MEYEKIAEVDFEKRDFRKVVFCMDRALEFAPACHRFKILKAECLAMLGRYPEAQFVASDI 202
Query: 413 PKIEPSTVSSSQTR-----FFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRX 467
+++ + + R + + +A FFV+A + MA E A A A + +
Sbjct: 203 LRMDSTNADALYVRGLCLYYEDCIEKAVQFFVQA-LRMAPDH-EKACVACRNAKALKAK- 259
Query: 468 XXXXXXXXXXXXXXXXRARGNDLFKSERFTEACQAYGEGLRFDPSN----SVLYCNRAAC 523
+ GN FK + A + Y E L DP+N + LYCNR
Sbjct: 260 ----------------KEDGNKAFKEGNYKLAYELYTEALGIDPNNIKTNAKLYCNRGTV 303
Query: 524 WFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFE-VLRRELPDDN 582
KL Q E ++ED A+ + Y KA LRRA E++ +AVRD+E V + E ++
Sbjct: 304 NSKLRQLEDAIEDCTNAVKLDDTYIKAYLRRAQCYMDTEQFEEAVRDYEKVYQTEKTKEH 363
Query: 583 EIAESLFHAQVSLKKSRGEEVYNMKFGGEVEEVSSLEQFRAA 624
+ + L +AQ+ LKKS+ ++ Y + G V++ +S ++ + A
Sbjct: 364 K--QLLKNAQLELKKSKRKDYYKI-LG--VDKNASEDEIKKA 400
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9MAH1 | TTL1_ARATH | No assigned EC number | 0.6802 | 0.7787 | 0.7954 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 4th Layer | 5.2.1.8 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 714 | |||
| cd02947 | 93 | cd02947, TRX_family, TRX family; composed of two g | 2e-22 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 2e-21 | |
| TIGR00990 | 615 | TIGR00990, 3a0801s09, mitochondrial precursor prot | 3e-18 | |
| PTZ00051 | 98 | PTZ00051, PTZ00051, thioredoxin; Provisional | 4e-17 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 1e-16 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 5e-16 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 2e-15 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 6e-15 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 1e-13 | |
| pfam00085 | 104 | pfam00085, Thioredoxin, Thioredoxin | 3e-13 | |
| TIGR00990 | 615 | TIGR00990, 3a0801s09, mitochondrial precursor prot | 6e-12 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 6e-12 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 6e-11 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 6e-11 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 6e-11 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 2e-10 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 2e-10 | |
| PLN03088 | 356 | PLN03088, PLN03088, SGT1, suppressor of G2 allele | 2e-09 | |
| cd02984 | 97 | cd02984, TRX_PICOT, TRX domain, PICOT (for PKC-int | 9e-09 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 2e-08 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 5e-08 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 7e-08 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 1e-07 | |
| pfam13432 | 65 | pfam13432, TPR_16, Tetratricopeptide repeat | 1e-07 | |
| TIGR01068 | 101 | TIGR01068, thioredoxin, thioredoxin | 1e-07 | |
| cd02989 | 113 | cd02989, Phd_like_TxnDC9, Phosducin (Phd)-like fam | 1e-07 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 2e-07 | |
| PLN03088 | 356 | PLN03088, PLN03088, SGT1, suppressor of G2 allele | 7e-07 | |
| cd02961 | 101 | cd02961, PDI_a_family, Protein Disulfide Isomerase | 7e-07 | |
| cd02957 | 113 | cd02957, Phd_like, Phosducin (Phd)-like family; co | 2e-05 | |
| COG5010 | 257 | COG5010, TadD, Flp pilus assembly protein TadD, co | 2e-05 | |
| pfam13431 | 34 | pfam13431, TPR_17, Tetratricopeptide repeat | 8e-05 | |
| smart00028 | 34 | smart00028, TPR, Tetratricopeptide repeats | 8e-05 | |
| PRK09381 | 109 | PRK09381, trxA, thioredoxin; Provisional | 1e-04 | |
| pfam00515 | 34 | pfam00515, TPR_1, Tetratricopeptide repeat | 1e-04 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 2e-04 | |
| TIGR02521 | 234 | TIGR02521, type_IV_pilW, type IV pilus biogenesis/ | 2e-04 | |
| pfam13432 | 65 | pfam13432, TPR_16, Tetratricopeptide repeat | 3e-04 | |
| pfam07719 | 34 | pfam07719, TPR_2, Tetratricopeptide repeat | 3e-04 | |
| COG0526 | 127 | COG0526, TrxA, Thiol-disulfide isomerase and thior | 4e-04 | |
| cd02987 | 175 | cd02987, Phd_like_Phd, Phosducin (Phd)-like family | 5e-04 | |
| COG4235 | 287 | COG4235, COG4235, Cytochrome c biogenesis factor [ | 6e-04 | |
| cd01659 | 69 | cd01659, TRX_superfamily, Thioredoxin (TRX) superf | 7e-04 | |
| pfam00515 | 34 | pfam00515, TPR_1, Tetratricopeptide repeat | 8e-04 | |
| COG4235 | 287 | COG4235, COG4235, Cytochrome c biogenesis factor [ | 0.001 | |
| pfam13424 | 78 | pfam13424, TPR_12, Tetratricopeptide repeat | 0.001 | |
| cd02956 | 96 | cd02956, ybbN, ybbN protein family; ybbN is a hypo | 0.001 | |
| pfam13424 | 78 | pfam13424, TPR_12, Tetratricopeptide repeat | 0.002 | |
| smart01043 | 145 | smart01043, BTAD, Bacterial transcriptional activa | 0.002 | |
| smart00028 | 34 | smart00028, TPR, Tetratricopeptide repeats | 0.003 | |
| pfam13431 | 34 | pfam13431, TPR_17, Tetratricopeptide repeat | 0.004 |
| >gnl|CDD|239245 cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains | Back alignment and domain information |
|---|
Score = 91.5 bits (228), Expect = 2e-22
Identities = 32/89 (35%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Query: 619 EQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAHAEN 678
E+F + VV F + CK I+P +E L YP + F+KVD+DE+P +A
Sbjct: 1 EEFEELIKSAKPVVVDFWAPWCGPCKAIAPVLEELAEEYPKVKFVKVDVDENPELAEEYG 60
Query: 679 VRIVPTFKIYKNGSRMKEIVCP-SRDMLE 706
VR +PTF +KNG + +V ++ LE
Sbjct: 61 VRSIPTFLFFKNGKEVDRVVGADPKEELE 89
|
Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functional TRXs have been reported in most organisms; in eukaryotes, they are located in the cytoplasm and the mitochondria. Higher plants contain more types (at least 20 TRX genes have been detected in the genome of Arabidopsis thaliana), two of which (types f amd m) are located in the same compartment, the chloroplast. Also included in the alignment are TRX-like domains which show sequence homology to TRX but do not contain the redox active CXXC motif. Group II proteins, in addition to either a redox active TRX or a TRX-like domain, also contain additional domains, which may or may not possess homology to known proteins. Length = 93 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 89.4 bits (222), Expect = 2e-21
Identities = 36/91 (39%), Positives = 52/91 (57%)
Query: 243 EELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEA 302
E L +GN Y+ G + EAL Y+KA+ L P NA N AAA LG+ EA+++ E+A
Sbjct: 1 EALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKA 60
Query: 303 VRLDPNYWRAHQRLGSLLVRLGQVENARRHL 333
+ LDP+ +A+ LG +LG+ E A
Sbjct: 61 LELDPDNAKAYYNLGLAYYKLGKYEEALEAY 91
|
Length = 100 |
| >gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Score = 88.5 bits (219), Expect = 3e-18
Identities = 43/122 (35%), Positives = 67/122 (54%), Gaps = 1/122 (0%)
Query: 453 AVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPS 512
V A++ +ID +V K A+ + +GN ++++ F +A + Y + + P
Sbjct: 100 PVEPADELPEIDESSVANLSEEERKKYAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKP- 158
Query: 513 NSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFE 572
+ V Y NRAAC LG WE+ VED+ AL + P+Y+KAL RRA + L K+ADA+ D
Sbjct: 159 DPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLT 218
Query: 573 VL 574
Sbjct: 219 AS 220
|
[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615 |
| >gnl|CDD|173347 PTZ00051, PTZ00051, thioredoxin; Provisional | Back alignment and domain information |
|---|
Score = 76.8 bits (189), Expect = 4e-17
Identities = 32/95 (33%), Positives = 55/95 (57%)
Query: 612 VEEVSSLEQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESP 671
V V+S +F + +S + +V F + CK+I+P+ E Y + F+KVD+DE
Sbjct: 2 VHIVTSQAEFESTLSQNELVIVDFYAEWCGPCKRIAPFYEECSKEYTKMVFVKVDVDELS 61
Query: 672 GVAHAENVRIVPTFKIYKNGSRMKEIVCPSRDMLE 706
VA EN+ +PTFK++KNGS + ++ + + L+
Sbjct: 62 EVAEKENITSMPTFKVFKNGSVVDTLLGANDEALK 96
|
Length = 98 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 75.5 bits (186), Expect = 1e-16
Identities = 30/87 (34%), Positives = 49/87 (56%)
Query: 486 RGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQP 545
GN +K + EA + Y + L DP N+ Y N AA ++KLG++E ++ED +AL + P
Sbjct: 6 LGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDP 65
Query: 546 NYTKALLRRAASNSKLEKWADAVRDFE 572
+ KA + KL K+ +A+ +E
Sbjct: 66 DNAKAYYNLGLAYYKLGKYEEALEAYE 92
|
Length = 100 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 72.7 bits (179), Expect = 5e-16
Identities = 29/68 (42%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Query: 241 DAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLG-RIGEAVKEC 299
+AE LK +GN L++ G + EA+ Y+KA+ L P NA N A A LG EA+++
Sbjct: 2 NAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDL 61
Query: 300 EEAVRLDP 307
E+A+ LDP
Sbjct: 62 EKALELDP 69
|
Length = 69 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 77.2 bits (188), Expect = 2e-15
Identities = 81/332 (24%), Positives = 122/332 (36%), Gaps = 70/332 (21%)
Query: 242 AEELKRMGNELYRKGCFGEALSMYDKAISLAPR--NAAFRSNRAAALTGLGRIGEAVKEC 299
L+ L G EAL + ++A+ L P A A AL LGR+ EA++
Sbjct: 23 LALLEAGLALLELLGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELL 82
Query: 300 EEAVR--LDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSK 357
E+A+ L PN A LG LL LG+ E A L
Sbjct: 83 EKALELELLPNLAEALLNLGLLLEALGKYEEALELL------------------------ 118
Query: 358 CTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEP 417
K +A +A GA L +L E+A +++P
Sbjct: 119 ----EKALALDPDPDLAEALLALGA-------------LYELGDYEEALELYEKALELDP 161
Query: 418 STVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNV 477
A + ALGR+E A+ EKA +++P + A+L
Sbjct: 162 EL-----------NELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALL---- 206
Query: 478 KLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDS 537
G K ++ EA + Y + L DP N+ N A +LG++E ++E
Sbjct: 207 -------NLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEAL 259
Query: 538 NQALLIQPNY---TKALLRRAASNSKLEKWAD 566
+AL + P+ ALL A +L + AD
Sbjct: 260 EKALELDPDLYNLGLALLLLLAEALELLEKAD 291
|
Length = 291 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 78.6 bits (194), Expect = 6e-15
Identities = 88/391 (22%), Positives = 147/391 (37%), Gaps = 54/391 (13%)
Query: 241 DAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECE 300
DA LK G+ L G AL+ Y KAI+L P N A A L G EA K +
Sbjct: 194 DALLLK--GDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHAD 251
Query: 301 EAVRLDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQV---VEKHLSK 357
++ PN AH + + E+AR L ++ P + L + E L
Sbjct: 252 ALLKKAPNSPLAHYLKALVDFQKKNYEDARETL-QDALKSAPEYLPALLLAGASEYQL-- 308
Query: 358 CTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEP 417
G+ + A + + + + + L+L ++++A ++LS P +
Sbjct: 309 -------GNLEQAYQYLNQILKYAPNSHQARRLLAS-IQLRLGRVDEAIATLS--PALGL 358
Query: 418 STVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVA------ 471
+ +L EAY +ALG FE A KA ++DP N
Sbjct: 359 DPDDPA---ALSLLGEAY---------LALGDFEKAAEYLAKATELDPENAAARTQLGIS 406
Query: 472 -VLLNNVK-----LVARARARGN----DLF------KSERFTEACQAYGEGLRFDPSNSV 515
+ + L A+ DL +S +F +A A + + P N+
Sbjct: 407 KLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNAS 466
Query: 516 LYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLR 575
L+ A + G ++ E +AL I+P++ A A + + DA++ FE +
Sbjct: 467 LHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVL 526
Query: 576 RELPDDNEIAESLFHAQVSLKKSRGEEVYNM 606
P + +L A + L+ EE
Sbjct: 527 TIDPKNLRAILAL--AGLYLRTGNEEEAVAW 555
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 66.6 bits (163), Expect = 1e-13
Identities = 30/107 (28%), Positives = 50/107 (46%), Gaps = 12/107 (11%)
Query: 440 RAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEA 499
+ LG ++ A+ EKA ++DP N A N +K ++ EA
Sbjct: 6 LGNLYYKLGDYDEALEYYEKALELDPDN---ADAYYN---------LAAAYYKLGKYEEA 53
Query: 500 CQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPN 546
+ Y + L DP N+ Y N ++KLG++E ++E +AL + PN
Sbjct: 54 LEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100
|
Length = 100 |
| >gnl|CDD|215704 pfam00085, Thioredoxin, Thioredoxin | Back alignment and domain information |
|---|
Score = 65.7 bits (161), Expect = 3e-13
Identities = 23/58 (39%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 642 HCKQISPYVETLCGRYPS-INFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKEIV 698
CK ++P E L Y + F KVD DE+P +A VR PT K +KNG ++ + V
Sbjct: 32 PCKALAPEYEKLAQEYKDDVKFAKVDADENPDLASEYGVRGFPTIKFFKNGKKVSDYV 89
|
Thioredoxins are small enzymes that participate in redox reactions, via the reversible oxidation of an active centre disulfide bond. Some members with only the active site are not separated from the noise. Length = 104 |
| >gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Score = 68.5 bits (167), Expect = 6e-12
Identities = 84/402 (20%), Positives = 168/402 (41%), Gaps = 48/402 (11%)
Query: 242 AEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEE 301
A +LK GN+ YR F +A+ +Y KAI P + + SNRAA LG + V++
Sbjct: 127 AAKLKEKGNKAYRNKDFNKAIKLYSKAIECKP-DPVYYSNRAACHNALGDWEKVVEDTTA 185
Query: 302 AVRLDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSK--CT 359
A+ LDP+Y +A R + LG+ +A L S Q VE+ L K +
Sbjct: 186 ALELDPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAES 245
Query: 360 DARKVGDWKSALREGDAAIA------------AGADFSPQLSMCRVEALLKLHQLEDAES 407
A+++ + K + AG + S +L L+L L+ ES
Sbjct: 246 KAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLG-LKSPES 304
Query: 408 SLSNIPKIEPSTVSSSQTRFFGMLSE--AYTFFVRAQIEMALGRFENAVTAAEKAGQIDP 465
E + + + G L E A +R + G+ A+ K+ ++DP
Sbjct: 305 KAD--ESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDP 362
Query: 466 RNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWF 525
R V + +K + G+ +A + + + L+ + + +Y +RA F
Sbjct: 363 R-----VTQSYIKRASMNLELGDP-------DKAEEDFDKALKLNSEDPDIYYHRAQLHF 410
Query: 526 KLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIA 585
G++ ++ +D +++ + P++ + ++ + K A ++ F ++ P+ ++
Sbjct: 411 IKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVY 470
Query: 586 ESLFHAQVSLKKSRGEEVYNMKFGGEVEEVSSLEQFRAAVSL 627
++ ++ L +++ +E ++E+F A+ L
Sbjct: 471 N--YYGELLLDQNKFDE--------------AIEKFDTAIEL 496
|
[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 6e-12
Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 483 ARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLG-QWERSVEDSNQAL 541
+ GN LFK + EA +AY + L DP N+ Y N A + KLG +E ++ED +AL
Sbjct: 6 LKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLEKAL 65
Query: 542 LIQP 545
+ P
Sbjct: 66 ELDP 69
|
Length = 69 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 6e-11
Identities = 24/62 (38%), Positives = 34/62 (54%)
Query: 247 RMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLD 306
+ Y+ G + EAL Y+KA+ L P NA N A LG+ EA++ E+A+ LD
Sbjct: 39 NLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELD 98
Query: 307 PN 308
PN
Sbjct: 99 PN 100
|
Length = 100 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 65.5 bits (160), Expect = 6e-11
Identities = 64/287 (22%), Positives = 110/287 (38%), Gaps = 40/287 (13%)
Query: 290 GRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQ 349
+ A+ + + A++ DPN A LG + + LG A + L + P
Sbjct: 36 NKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPL 95
Query: 350 VVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSL 409
+ +L + G ++ L E + + +L R A L L QLE A+ S
Sbjct: 96 LARAYLLQ-------GKFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSY 148
Query: 410 SNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVE 469
I+P ++ + L AQ+ +A RF+ A ++ DP NV+
Sbjct: 149 EQALAIDPRSLYA-------KLG-------LAQLALAENRFDEARALIDEVLTADPGNVD 194
Query: 470 VAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQ 529
A+LL +G+ L A AY + + P+N + A + G+
Sbjct: 195 -ALLL-----------KGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGE 242
Query: 530 WERSVEDSNQALLIQPN-----YTKALLRRAASN--SKLEKWADAVR 569
+E + + ++ L PN Y KAL+ N E DA++
Sbjct: 243 FEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALK 289
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 65.5 bits (160), Expect = 6e-11
Identities = 83/381 (21%), Positives = 144/381 (37%), Gaps = 63/381 (16%)
Query: 225 PENANVNRNRGGICGGDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAA 284
P+NA+++ G I KG +A ++KA+S+ P +N A
Sbjct: 462 PDNASLHNLLGAI--------------YLGKGDLAKAREAFEKALSIEPDFFPAAANLAR 507
Query: 285 ALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTE 344
G +A++ E+ + +DP RA L L +R G E A L + +P E
Sbjct: 508 IDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLE-KAAELNPQE 566
Query: 345 VH-RLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLE 403
+ L + + +L K G K AL + A A D SP+ + A L L
Sbjct: 567 IEPALALAQYYLGK-------GQLKKALAILNEAADAAPD-SPEAWLMLGRAQLAAGDLN 618
Query: 404 DAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQI 463
A SS + ++P A + A + + A+T+ ++A ++
Sbjct: 619 KAVSSFKKLLALQP--------------DSALALLLLADAYAVMKNYAKAITSLKRALEL 664
Query: 464 DPRNVEV----AVLLNNVKLVARAR-------------ARGNDL-----FKSERFTEACQ 501
P N E A LL K A+ A G +L + + + A Q
Sbjct: 665 KPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQ 724
Query: 502 AYGEGLRFDPSN-SVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSK 560
AY + L+ PS+ + + +RA G +V+ L PN A
Sbjct: 725 AYRKALKRAPSSQNAIKLHRA--LLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLA 782
Query: 561 LEKWADAVRDFEVLRRELPDD 581
+ + A++ ++ + ++ PD+
Sbjct: 783 QKDYDKAIKHYQTVVKKAPDN 803
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 62.2 bits (149), Expect = 2e-10
Identities = 56/205 (27%), Positives = 92/205 (44%), Gaps = 12/205 (5%)
Query: 241 DAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRA-AALTGLGRIGEAVKEC 299
AE L +G L G + EAL + +KA++L P + A AL LG EA++
Sbjct: 94 LAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELY 153
Query: 300 EEAVRLDP---NYWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLS 356
E+A+ LDP A LG+LL LG+ E A L ++A +++ E L+
Sbjct: 154 EKALELDPELNELAEALLALGALLEALGRYEEALELL----EKA--LKLNPDDDAEALLN 207
Query: 357 KCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIE 416
K+G ++ AL + A+ D + L LL+L + E+A +L +++
Sbjct: 208 LGLLYLKLGKYEEALEYYEKALELDPDNAEALYN-LALLLLELGRYEEALEALEKALELD 266
Query: 417 PSTVSSSQTRFFGMLSEAYTFFVRA 441
P + +L+EA +A
Sbjct: 267 PDLYNLGLA-LLLLLAEALELLEKA 290
|
Length = 291 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 63.6 bits (155), Expect = 2e-10
Identities = 71/352 (20%), Positives = 115/352 (32%), Gaps = 44/352 (12%)
Query: 254 RKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAH 313
R G EA++ A+ L P + A S A LG +A + +A LDP A
Sbjct: 341 RLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAAR 400
Query: 314 QRLGSLLVRLGQVENARRHLCLSGQQA-----DPTEVHRLQVVEKHLSKCTDARKVGDWK 368
+LG + G A L + A + L ++ +L + G +
Sbjct: 401 TQLGISKLSQGDPSEAIADL----ETAAQLDPELGRADLL-LILSYL-------RSGQFD 448
Query: 369 SALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFF 428
AL D + L L L A + IEP ++
Sbjct: 449 KALAAAKKLEKKQPD-NASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAA----- 502
Query: 429 GMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGN 488
A+I++ G ++A+ EK IDP+N+ + L + L GN
Sbjct: 503 ---------ANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYL-----RTGN 548
Query: 489 DLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYT 548
+ EA + +P A + GQ ++++ N+A P+
Sbjct: 549 E-------EEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSP 601
Query: 549 KALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAESLFHAQVSLKKSRG 600
+A L + AV F+ L PD L A +K
Sbjct: 602 EAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAK 653
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|215568 PLN03088, PLN03088, SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Score = 59.8 bits (145), Expect = 2e-09
Identities = 29/89 (32%), Positives = 50/89 (56%)
Query: 242 AEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEE 301
A++L+ E + F A+ +Y +AI L P NA ++RA A LG EAV + +
Sbjct: 2 AKDLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANK 61
Query: 302 AVRLDPNYWRAHQRLGSLLVRLGQVENAR 330
A+ LDP+ +A+ R G+ ++L + + A+
Sbjct: 62 AIELDPSLAKAYLRKGTACMKLEEYQTAK 90
|
Length = 356 |
| >gnl|CDD|239282 cd02984, TRX_PICOT, TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 9e-09
Identities = 23/84 (27%), Positives = 43/84 (51%), Gaps = 3/84 (3%)
Query: 617 SLEQFRAAVSLPG--VSVVHFKSASNLHCKQISPYVETLCG-RYPSINFLKVDIDESPGV 673
S E+F + + V+HF + CKQ++ E L +PS+ FL ++ +E P +
Sbjct: 1 SEEEFEELLKSDASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPEI 60
Query: 674 AHAENVRIVPTFKIYKNGSRMKEI 697
+ + VPTF ++NG+ + +
Sbjct: 61 SEKFEITAVPTFVFFRNGTIVDRV 84
|
PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Length = 97 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 2e-08
Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 513 NSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKL-EKWADAVRDF 571
N+ N FKLG ++ ++E +AL + P+ +A A + KL + + +A+ D
Sbjct: 2 NAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDL 61
Query: 572 E 572
E
Sbjct: 62 E 62
|
Length = 69 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 5e-08
Identities = 17/57 (29%), Positives = 31/57 (54%)
Query: 516 LYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFE 572
N ++KLG ++ ++E +AL + P+ A AA+ KL K+ +A+ D+E
Sbjct: 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYE 58
|
Length = 100 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 54.5 bits (129), Expect = 7e-08
Identities = 51/224 (22%), Positives = 84/224 (37%), Gaps = 26/224 (11%)
Query: 366 DWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQT 425
D AL A+A + L + L L +L +A L ++ P+
Sbjct: 3 DLLLALAILLEALAKLLAEALALLEAGLALLELLGELAEALELLEEALELLPN------- 55
Query: 426 RFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARA 485
A + A + LGR E A+ EKA +++ LLN
Sbjct: 56 -----SDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLN---------- 100
Query: 486 RGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRA-ACWFKLGQWERSVEDSNQALLIQ 544
G L ++ EA + + L DP + A ++LG +E ++E +AL +
Sbjct: 101 LGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELD 160
Query: 545 P---NYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIA 585
P +ALL A L ++ +A+ E + PDD+ A
Sbjct: 161 PELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEA 204
|
Length = 291 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 1e-07
Identities = 20/69 (28%), Positives = 30/69 (43%)
Query: 274 RNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVRLGQVENARRHL 333
NA N AL LG EA++ E+A+ LDP+ A+ L ++LG+
Sbjct: 1 DNAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALED 60
Query: 334 CLSGQQADP 342
+ DP
Sbjct: 61 LEKALELDP 69
|
Length = 69 |
| >gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 1e-07
Identities = 17/63 (26%), Positives = 26/63 (41%)
Query: 247 RMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLD 306
+ R G + EAL+ + A++ P A AL GR+ EA A+ D
Sbjct: 2 ALARAALRAGDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAAALLRAALAAD 61
Query: 307 PNY 309
P+
Sbjct: 62 PDD 64
|
Length = 65 |
| >gnl|CDD|200072 TIGR01068, thioredoxin, thioredoxin | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 1e-07
Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Query: 617 SLEQFRAAV-SLPGVSVVHFKSASNLHCKQISPYVETLCGRYPS-INFLKVDIDESPGVA 674
+ F + S +V F + CK I+P +E L Y + F+K+++DE+P +A
Sbjct: 2 TDANFDETIASSDKPVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPDIA 61
Query: 675 HAENVRIVPTFKIYKNGSRMKEIV 698
+R +PT ++KNG + V
Sbjct: 62 AKYGIRSIPTLLLFKNGKEVDRSV 85
|
Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by This model. Any protein that hits once with a score greater than the second (per domain) trusted cutoff may be taken as thioredoxin [Energy metabolism, Electron transport]. Length = 101 |
| >gnl|CDD|239287 cd02989, Phd_like_TxnDC9, Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 1e-07
Identities = 25/89 (28%), Positives = 46/89 (51%)
Query: 610 GEVEEVSSLEQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDE 669
G+ EVS ++F V V HF CK + ++E L ++ F+KV+ ++
Sbjct: 4 GKYREVSDEKEFFEIVKSSERVVCHFYHPEFFRCKIMDKHLEILAKKHLETKFIKVNAEK 63
Query: 670 SPGVAHAENVRIVPTFKIYKNGSRMKEIV 698
+P + N++++PT ++KNG + IV
Sbjct: 64 APFLVEKLNIKVLPTVILFKNGKTVDRIV 92
|
The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit. Length = 113 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 2e-07
Identities = 26/119 (21%), Positives = 45/119 (37%), Gaps = 26/119 (21%)
Query: 394 EALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENA 453
KL ++A +++P A ++ A LG++E A
Sbjct: 8 NLYYKLGDYDEALEYYEKALELDPD--------------NADAYYNLAAAYYKLGKYEEA 53
Query: 454 VTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPS 512
+ EKA ++DP N + N G +K ++ EA +AY + L DP+
Sbjct: 54 LEDYEKALELDPDNAKA---YYN---------LGLAYYKLGKYEEALEAYEKALELDPN 100
|
Length = 100 |
| >gnl|CDD|215568 PLN03088, PLN03088, SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 7e-07
Identities = 28/89 (31%), Positives = 47/89 (52%)
Query: 485 ARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQ 544
+ + F + F A Y + + DP+N+ LY +RA KLG + +V D+N+A+ +
Sbjct: 7 DKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELD 66
Query: 545 PNYTKALLRRAASNSKLEKWADAVRDFEV 573
P+ KA LR+ + KLE++ A E
Sbjct: 67 PSLAKAYLRKGTACMKLEEYQTAKAALEK 95
|
Length = 356 |
| >gnl|CDD|239259 cd02961, PDI_a_family, Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 7e-07
Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 3/58 (5%)
Query: 642 HCKQISPYVETLCGRY---PSINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKE 696
HCK ++P E L + KVD + + VR PT K++ NGS+
Sbjct: 29 HCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGVRGYPTIKLFPNGSKEPV 86
|
Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies are necessary for the isomerase function. The different types of PDIs may show different substrate specificities and tissue-specific expression, or may be induced by stress. PDIs are in their reduced form at steady state and are oxidized to the active form by Ero1, which is localized in the ER through ERp44. Some members of this family also contain a DnaJ domain in addition to the redox active a domains; examples are ERdj5 and Pfj2. Also included in the family is the redox inactive N-terminal TRX-like domain of ERp29. Length = 101 |
| >gnl|CDD|239255 cd02957, Phd_like, Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions | Back alignment and domain information |
|---|
Score = 44.1 bits (105), Expect = 2e-05
Identities = 29/97 (29%), Positives = 52/97 (53%), Gaps = 5/97 (5%)
Query: 610 GEVEEVSSLEQFRAAV--SLPGVSVV-HFKSASNLHCKQISPYVETLCGRYPSINFLKVD 666
GEV E+SS ++F V + G VV HF CK + ++E L +YP F+K++
Sbjct: 4 GEVREISS-KEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYPETKFVKIN 62
Query: 667 IDESPGVAHAENVRIVPTFKIYKNGSRMKEIVCPSRD 703
+++ + + +++++PT +YKNG + IV
Sbjct: 63 AEKA-FLVNYLDIKVLPTLLVYKNGELIDNIVGFEEL 98
|
Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain. Also included in this family is a PhLP characterized as a viral inhibitor of apoptosis (IAP)-associated factor, named VIAF, that functions in caspase activation during apoptosis. Length = 113 |
| >gnl|CDD|227343 COG5010, TadD, Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 2e-05
Identities = 35/93 (37%), Positives = 45/93 (48%)
Query: 241 DAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECE 300
D E L G R G FGEA+S+ KA LAP + + AAL LGR EA +
Sbjct: 99 DRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYR 158
Query: 301 EAVRLDPNYWRAHQRLGSLLVRLGQVENARRHL 333
+A+ L PN LG L+ G +E+A L
Sbjct: 159 QALELAPNEPSIANNLGMSLLLRGDLEDAETLL 191
|
Length = 257 |
| >gnl|CDD|205609 pfam13431, TPR_17, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 8e-05
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 298 ECEEAVRLDPNYWRAHQRLGSLLVRLGQVENARR 331
E+A+ LDPN A+ L LL+ LGQ + A +
Sbjct: 1 LYEKALELDPNNAEAYYNLALLLLNLGQYDEALQ 34
|
Length = 34 |
| >gnl|CDD|197478 smart00028, TPR, Tetratricopeptide repeats | Back alignment and domain information |
|---|
Score = 39.7 bits (94), Expect = 8e-05
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 242 AEELKRMGNELYRKGCFGEALSMYDKAISLAPRN 275
AE L +GN + G + EAL Y+KA+ L P N
Sbjct: 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. Length = 34 |
| >gnl|CDD|181812 PRK09381, trxA, thioredoxin; Provisional | Back alignment and domain information |
|---|
Score = 42.0 bits (98), Expect = 1e-04
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 629 GVSVVHFKSASNLHCKQISPYVETLCGRYP-SINFLKVDIDESPGVAHAENVRIVPTFKI 687
G +V F + CK I+P ++ + Y + K++ID++PG A +R +PT +
Sbjct: 22 GAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLL 81
Query: 688 YKNG 691
+KNG
Sbjct: 82 FKNG 85
|
Length = 109 |
| >gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 39.7 bits (94), Expect = 1e-04
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 242 AEELKRMGNELYRKGCFGEALSMYDKAISLAPRN 275
A+ L +GN + G + EAL Y+KA+ L P N
Sbjct: 1 AKALYNLGNAYLKLGKYDEALEYYEKALELNPNN 34
|
Length = 34 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 2e-04
Identities = 21/52 (40%), Positives = 29/52 (55%)
Query: 252 LYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAV 303
L KG AL + KA+++AP AA R + A AL GR EA KE ++ +
Sbjct: 847 LVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKLL 898
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 2e-04
Identities = 39/187 (20%), Positives = 65/187 (34%), Gaps = 31/187 (16%)
Query: 223 VGPENANVNRNRGGICGGDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNR 282
V + +RN+ A+ ++ +G A DKA+ P +
Sbjct: 18 VPRSSRTTDRNKA------AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLAL 71
Query: 283 AAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQADP 342
A LG + +A A+ L+PN G+ L + G+ E A + + DP
Sbjct: 72 ALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAI--EDP 129
Query: 343 TEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMC------RVEAL 396
+ +E + C AL+ GD A L+ R E+L
Sbjct: 130 LYPQPARSLE-NAGLC-----------ALKAGDFDKAE-----KYLTRALQIDPQRPESL 172
Query: 397 LKLHQLE 403
L+L +L
Sbjct: 173 LELAELY 179
|
Members of this family are designated PilF in ref (PMID:8973346) and PilW in ref (PMID:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. Length = 234 |
| >gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 3e-04
Identities = 19/61 (31%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
Query: 282 RAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQAD 341
A A G EA+ E A+ P A LG L+R G++ A L + AD
Sbjct: 3 LARAALRAGDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAAA-LLRAALAAD 61
Query: 342 P 342
P
Sbjct: 62 P 62
|
Length = 65 |
| >gnl|CDD|191825 pfam07719, TPR_2, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 38.3 bits (90), Expect = 3e-04
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 242 AEELKRMGNELYRKGCFGEALSMYDKAISLAPRN 275
AE L +G Y+ G + EAL Y+KA+ L P N
Sbjct: 1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPNN 34
|
This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515. Length = 34 |
| >gnl|CDD|223600 COG0526, TrxA, Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion] | Back alignment and domain information |
|---|
Score = 40.7 bits (94), Expect = 4e-04
Identities = 18/73 (24%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
Query: 630 VSVVHFKSASNLHCKQISPYVETLCGRYP-SINFLKVDI-DESPGVAHAENVRI--VPTF 685
+V F + C+ +P +E L Y + + V++ DE+P +A V + +PT
Sbjct: 34 PVLVDFWAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDENPDLAAEFGVAVRSIPTL 93
Query: 686 KIYKNGSRMKEIV 698
++K+G + +V
Sbjct: 94 LLFKDGKEVDRLV 106
|
Length = 127 |
| >gnl|CDD|239285 cd02987, Phd_like_Phd, Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 5e-04
Identities = 35/150 (23%), Positives = 61/150 (40%), Gaps = 11/150 (7%)
Query: 565 ADAVRDFEVLRRELPDDNEIAESLFHAQVSLKKSRGEEVYNMK-FG---GEVEEVSSLEQ 620
D R F+ L+ +D++ E ++ R +E++ FG G+V E+ S EQ
Sbjct: 14 NDW-RKFKQLKESEQEDDDDDEDKEEFLQQYREQRMQEMHAKLPFGRRFGKVYELDSGEQ 72
Query: 621 FRAAVSLPG---VSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDES-PGVAHA 676
F A+ G VVH C ++ + L YP++ F K+ +
Sbjct: 73 FLDAIDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYPAVKFCKIRASATGASDEFD 132
Query: 677 ENVRIVPTFKIYKNGSRMKEIVCPSRDMLE 706
+ +P +YK G + V + D+ E
Sbjct: 133 TDA--LPALLVYKGGELIGNFVRVTEDLGE 160
|
It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain. Length = 175 |
| >gnl|CDD|226687 COG4235, COG4235, Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 6e-04
Identities = 18/73 (24%), Positives = 29/73 (39%), Gaps = 9/73 (12%)
Query: 441 AQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEAC 500
+ MALGR +A+ A A ++ N E+ + L A A + +A
Sbjct: 163 GRAYMALGRASDALLAYRNALRLAGDNPEILLGL------AEALYYQAG---QQMTAKAR 213
Query: 501 QAYGEGLRFDPSN 513
+ L DP+N
Sbjct: 214 ALLRQALALDPAN 226
|
Length = 287 |
| >gnl|CDD|238829 cd01659, TRX_superfamily, Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold | Back alignment and domain information |
|---|
Score = 38.4 bits (89), Expect = 7e-04
Identities = 16/67 (23%), Positives = 27/67 (40%), Gaps = 4/67 (5%)
Query: 632 VVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAHA---ENVRIVPTFKIY 688
V+ + C+ + P + L + F VD+DE P + V VPT ++
Sbjct: 2 VLFYAPWCP-FCQALRPVLAELALLNKGVKFEAVDVDEDPALEKELKRYGVGGVPTLVVF 60
Query: 689 KNGSRMK 695
G +K
Sbjct: 61 GPGIGVK 67
|
Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others. Length = 69 |
| >gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 37.0 bits (87), Expect = 8e-04
Identities = 9/31 (29%), Positives = 17/31 (54%)
Query: 517 YCNRAACWFKLGQWERSVEDSNQALLIQPNY 547
N + KLG+++ ++E +AL + PN
Sbjct: 4 LYNLGNAYLKLGKYDEALEYYEKALELNPNN 34
|
Length = 34 |
| >gnl|CDD|226687 COG4235, COG4235, Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.001
Identities = 30/123 (24%), Positives = 44/123 (35%), Gaps = 12/123 (9%)
Query: 240 GDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGL--GRIGEAVK 297
GDAE +G G +AL Y A+ LA N A AL ++ +
Sbjct: 154 GDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKAR 213
Query: 298 EC-EEAVRLDPNYWRAHQRLGSLLVRLGQVENA----RRHLCLSGQQADPTEVHRLQVVE 352
+A+ LDP RA L G A + L L P + R ++E
Sbjct: 214 ALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDL-----LPADDPRRSLIE 268
Query: 353 KHL 355
+ +
Sbjct: 269 RSI 271
|
Length = 287 |
| >gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 37.7 bits (88), Expect = 0.001
Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 7/68 (10%)
Query: 273 PRNAAFRSNRAAALTGLGRIGEAVKECEEAVRL-------DPNYWRAHQRLGSLLVRLGQ 325
P AA +N A L LG EA++ E+A+ L P RA L L + LG
Sbjct: 2 PDLAAALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALGD 61
Query: 326 VENARRHL 333
+ A +L
Sbjct: 62 YDEALEYL 69
|
Length = 78 |
| >gnl|CDD|239254 cd02956, ybbN, ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain | Back alignment and domain information |
|---|
Score = 38.0 bits (89), Expect = 0.001
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 632 VVHFKSASNLHCKQISPYVETLCGRYP-SINFLKVDIDESPGVAHAENVRIVPTFKIYKN 690
VV F + + K++ P +E L Y KV+ D P +A V+ +PT ++
Sbjct: 16 VVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQPQIAQQFGVQALPTVYLFAA 75
Query: 691 G 691
G
Sbjct: 76 G 76
|
Its gene has been sequenced from several gammaproteobacteria and actinobacteria. Length = 96 |
| >gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 37.0 bits (86), Expect = 0.002
Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 7/71 (9%)
Query: 245 LKRMGNELYRKGCFGEALSMYDKAISLA-------PRNAAFRSNRAAALTGLGRIGEAVK 297
L + L R G + EAL + +KA+ LA P A +N A LG EA++
Sbjct: 8 LNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALGDYDEALE 67
Query: 298 ECEEAVRLDPN 308
E+A+ L
Sbjct: 68 YLEKALALREA 78
|
Length = 78 |
| >gnl|CDD|198111 smart01043, BTAD, Bacterial transcriptional activator domain | Back alignment and domain information |
|---|
Score = 38.8 bits (91), Expect = 0.002
Identities = 20/51 (39%), Positives = 24/51 (47%)
Query: 282 RAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVRLGQVENARRH 332
A AL LGR EA+ E + LDP R H+ L L R G+ A R
Sbjct: 67 LAEALLALGRHEEALALLERLLALDPLRERLHRLLMRALYRAGRRAEALRA 117
|
Found in the DNRI/REDD/AFSR family of regulators. This region of AFSR along with the C terminal region is capable of independently directing actinorhodin production. This family contains TPR repeats. Length = 145 |
| >gnl|CDD|197478 smart00028, TPR, Tetratricopeptide repeats | Back alignment and domain information |
|---|
Score = 35.5 bits (83), Expect = 0.003
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 517 YCNRAACWFKLGQWERSVEDSNQALLIQPNY 547
N + KLG ++ ++E +AL + PN
Sbjct: 4 LYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. Length = 34 |
| >gnl|CDD|205609 pfam13431, TPR_17, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 35.3 bits (82), Expect = 0.004
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 264 MYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVK 297
+Y+KA+ L P NA N A L LG+ EA++
Sbjct: 1 LYEKALELDPNNAEAYYNLALLLLNLGQYDEALQ 34
|
Length = 34 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 714 | |||
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 100.0 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 100.0 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 100.0 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 100.0 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 100.0 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.97 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.97 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.97 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.97 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.96 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.96 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.96 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.96 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 99.96 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.95 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.95 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.94 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.94 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.94 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.94 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.94 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.93 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.93 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.93 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.93 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.92 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.91 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 99.91 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.9 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.9 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.9 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.89 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.88 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 99.88 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.88 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.87 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.87 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.87 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.87 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.86 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.85 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.84 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.84 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.84 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.84 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.84 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.83 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 99.83 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 99.83 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.83 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.82 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.81 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.81 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 99.81 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.81 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.81 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.81 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.81 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.81 | |
| KOG0910 | 150 | consensus Thioredoxin-like protein [Posttranslatio | 99.8 | |
| KOG0907 | 106 | consensus Thioredoxin [Posttranslational modificat | 99.79 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.79 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.79 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.79 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.78 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.78 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 99.78 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.78 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.78 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.77 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 99.77 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.75 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.74 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.74 | |
| PLN02789 | 320 | farnesyltranstransferase | 99.74 | |
| cd02954 | 114 | DIM1 Dim1 family; Dim1 is also referred to as U5 s | 99.74 | |
| PLN02789 | 320 | farnesyltranstransferase | 99.73 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.73 | |
| PHA02278 | 103 | thioredoxin-like protein | 99.71 | |
| cd02985 | 103 | TRX_CDSP32 TRX family, chloroplastic drought-induc | 99.71 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.71 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.7 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 99.69 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.68 | |
| cd02948 | 102 | TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fus | 99.67 | |
| KOG0908 | 288 | consensus Thioredoxin-like protein [Posttranslatio | 99.67 | |
| PLN00410 | 142 | U5 snRNP protein, DIM1 family; Provisional | 99.65 | |
| cd02965 | 111 | HyaE HyaE family; HyaE is also called HupG and Hox | 99.65 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.65 | |
| cd02989 | 113 | Phd_like_TxnDC9 Phosducin (Phd)-like family, Thior | 99.65 | |
| cd02987 | 175 | Phd_like_Phd Phosducin (Phd)-like family, Phd subf | 99.64 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.64 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 99.64 | |
| cd03065 | 120 | PDI_b_Calsequestrin_N PDIb family, Calsequestrin s | 99.64 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.63 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 99.62 | |
| cd02957 | 113 | Phd_like Phosducin (Phd)-like family; composed of | 99.62 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.61 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 99.6 | |
| cd02986 | 114 | DLP Dim1 family, Dim1-like protein (DLP) subfamily | 99.59 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 99.59 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.59 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 99.59 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 99.58 | |
| PF00085 | 103 | Thioredoxin: Thioredoxin; InterPro: IPR013766 Thio | 99.58 | |
| cd03006 | 113 | PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamil | 99.57 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.57 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.57 | |
| PTZ00051 | 98 | thioredoxin; Provisional | 99.57 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 99.57 | |
| cd02963 | 111 | TRX_DnaJ TRX domain, DnaJ domain containing protei | 99.56 | |
| cd02956 | 96 | ybbN ybbN protein family; ybbN is a hypothetical p | 99.56 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 99.56 | |
| PRK10996 | 139 | thioredoxin 2; Provisional | 99.55 | |
| cd02999 | 100 | PDI_a_ERp44_like PDIa family, endoplasmic reticulu | 99.55 | |
| cd03003 | 101 | PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfam | 99.55 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 99.54 | |
| cd02984 | 97 | TRX_PICOT TRX domain, PICOT (for PKC-interacting c | 99.53 | |
| cd02988 | 192 | Phd_like_VIAF Phosducin (Phd)-like family, Viral i | 99.53 | |
| PRK09381 | 109 | trxA thioredoxin; Provisional | 99.53 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.52 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.51 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 99.51 | |
| PTZ00062 | 204 | glutaredoxin; Provisional | 99.5 | |
| cd03004 | 104 | PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfam | 99.5 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 99.5 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.5 | |
| cd02950 | 142 | TxlA TRX-like protein A (TxlA) family; TxlA was or | 99.5 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 99.49 | |
| cd02962 | 152 | TMX2 TMX2 family; composed of proteins similar to | 99.49 | |
| cd02975 | 113 | PfPDO_like_N Pyrococcus furiosus protein disulfide | 99.49 | |
| cd02996 | 108 | PDI_a_ERp44 PDIa family, endoplasmic reticulum pro | 99.47 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 99.47 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.46 | |
| cd02949 | 97 | TRX_NTR TRX domain, novel NADPH thioredoxin reduct | 99.46 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 99.46 | |
| cd02994 | 101 | PDI_a_TMX PDIa family, TMX subfamily; composed of | 99.46 | |
| cd03005 | 102 | PDI_a_ERp46 PDIa family, endoplasmic reticulum pro | 99.45 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 99.45 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 99.45 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.45 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 99.44 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 99.43 | |
| cd02953 | 104 | DsbDgamma DsbD gamma family; DsbD gamma is the C-t | 99.42 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 99.41 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 99.41 | |
| TIGR01295 | 122 | PedC_BrcD bacteriocin transport accessory protein, | 99.41 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.41 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.41 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 99.4 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 99.4 | |
| cd03000 | 104 | PDI_a_TMX3 PDIa family, TMX3 subfamily; composed o | 99.4 | |
| TIGR01068 | 101 | thioredoxin thioredoxin. Several proteins, such as | 99.4 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 99.39 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.39 | |
| TIGR01126 | 102 | pdi_dom protein disulfide-isomerase domain. This m | 99.39 | |
| cd02997 | 104 | PDI_a_PDIR PDIa family, PDIR subfamily; composed o | 99.38 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 99.38 | |
| PTZ00443 | 224 | Thioredoxin domain-containing protein; Provisional | 99.37 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 99.36 | |
| cd03002 | 109 | PDI_a_MPD1_like PDI family, MPD1-like subfamily; c | 99.36 | |
| cd02952 | 119 | TRP14_like Human TRX-related protein 14 (TRP14)-li | 99.34 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 99.34 | |
| cd03001 | 103 | PDI_a_P5 PDIa family, P5 subfamily; composed of eu | 99.32 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.3 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 99.3 | |
| cd02947 | 93 | TRX_family TRX family; composed of two groups: Gro | 99.29 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 99.29 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.28 | |
| cd02951 | 125 | SoxW SoxW family; SoxW is a bacterial periplasmic | 99.26 | |
| cd02961 | 101 | PDI_a_family Protein Disulfide Isomerase (PDIa) fa | 99.25 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.25 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 99.25 | |
| cd02998 | 105 | PDI_a_ERp38 PDIa family, endoplasmic reticulum pro | 99.24 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 99.23 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.21 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 99.21 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.19 | |
| cd02995 | 104 | PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain | 99.19 | |
| TIGR00411 | 82 | redox_disulf_1 small redox-active disulfide protei | 99.19 | |
| PHA02125 | 75 | thioredoxin-like protein | 99.18 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 99.15 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 99.15 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 99.14 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 99.13 | |
| cd02993 | 109 | PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfat | 99.13 | |
| TIGR02187 | 215 | GlrX_arch Glutaredoxin-like domain protein. This f | 99.13 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 99.12 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 99.1 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 99.1 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 99.1 | |
| KOG0190 | 493 | consensus Protein disulfide isomerase (prolyl 4-hy | 99.1 | |
| PRK11509 | 132 | hydrogenase-1 operon protein HyaE; Provisional | 99.08 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 99.08 | |
| cd02982 | 103 | PDI_b'_family Protein Disulfide Isomerase (PDIb') | 99.08 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 99.08 | |
| KOG1672 | 211 | consensus ATP binding protein [Posttranslational m | 99.07 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 99.07 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 99.06 | |
| TIGR00412 | 76 | redox_disulf_2 small redox-active disulfide protei | 99.05 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 99.05 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 99.05 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 99.04 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 99.03 | |
| TIGR02187 | 215 | GlrX_arch Glutaredoxin-like domain protein. This f | 99.02 | |
| cd02992 | 114 | PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidas | 99.02 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 99.02 | |
| TIGR00424 | 463 | APS_reduc 5'-adenylylsulfate reductase, thioredoxi | 99.01 | |
| TIGR02738 | 153 | TrbB type-F conjugative transfer system pilin asse | 99.01 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 99.01 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 99.01 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 99.0 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.99 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 98.99 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 98.99 | |
| cd03007 | 116 | PDI_a_ERp29_N PDIa family, endoplasmic reticulum p | 98.99 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 98.98 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 98.98 | |
| TIGR01130 | 462 | ER_PDI_fam protein disulfide isomerases, eukaryoti | 98.98 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.98 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.97 | |
| PTZ00102 | 477 | disulphide isomerase; Provisional | 98.96 | |
| cd02959 | 117 | ERp19 Endoplasmic reticulum protein 19 (ERp19) fam | 98.96 | |
| TIGR02740 | 271 | TraF-like TraF-like protein. This protein is relat | 98.95 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.95 | |
| PLN02309 | 457 | 5'-adenylylsulfate reductase | 98.95 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 98.94 | |
| cd03026 | 89 | AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxid | 98.94 | |
| cd02973 | 67 | TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)- | 98.94 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.94 | |
| KOG4277 | 468 | consensus Uncharacterized conserved protein, conta | 98.94 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 98.94 | |
| PRK14018 | 521 | trifunctional thioredoxin/methionine sulfoxide red | 98.93 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.93 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 98.93 | |
| PTZ00102 | 477 | disulphide isomerase; Provisional | 98.92 | |
| PRK00293 | 571 | dipZ thiol:disulfide interchange protein precursor | 98.92 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 98.92 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 98.91 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 98.91 | |
| PRK15412 | 185 | thiol:disulfide interchange protein DsbE; Provisio | 98.9 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 98.9 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.89 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 98.88 | |
| PF02114 | 265 | Phosducin: Phosducin; InterPro: IPR024253 The oute | 98.87 | |
| KOG0912 | 375 | consensus Thiol-disulfide isomerase and thioredoxi | 98.86 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 98.85 | |
| TIGR00385 | 173 | dsbE periplasmic protein thiol:disulfide oxidoredu | 98.84 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 98.83 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 98.83 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.83 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 98.83 | |
| cd02955 | 124 | SSP411 TRX domain, SSP411 protein family; members | 98.82 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.81 | |
| cd03010 | 127 | TlpA_like_DsbE TlpA-like family, DsbE (also known | 98.8 | |
| PF13098 | 112 | Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_ | 98.8 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 98.8 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.78 | |
| cd03008 | 146 | TryX_like_RdCVF Tryparedoxin (TryX)-like family, R | 98.78 | |
| PRK13728 | 181 | conjugal transfer protein TrbB; Provisional | 98.77 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 98.76 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 98.76 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.75 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 98.74 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 98.74 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 98.74 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 98.74 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 98.73 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.71 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 98.7 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 98.68 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 98.67 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 98.66 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 98.66 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 98.66 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 98.65 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 98.65 | |
| PF13905 | 95 | Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_ | 98.65 | |
| cd02964 | 132 | TryX_like_family Tryparedoxin (TryX)-like family; | 98.64 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 98.64 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.64 | |
| TIGR01130 | 462 | ER_PDI_fam protein disulfide isomerases, eukaryoti | 98.64 | |
| KOG0376 | 476 | consensus Serine-threonine phosphatase 2A, catalyt | 98.63 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 98.63 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 98.62 | |
| PRK03147 | 173 | thiol-disulfide oxidoreductase; Provisional | 98.62 | |
| cd03009 | 131 | TryX_like_TryX_NRX Tryparedoxin (TryX)-like family | 98.61 | |
| TIGR01626 | 184 | ytfJ_HI0045 conserved hypothetical protein YtfJ-fa | 98.61 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 98.59 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 98.59 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 98.58 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 98.57 | |
| cd02966 | 116 | TlpA_like_family TlpA-like family; composed of Tlp | 98.55 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 98.54 | |
| cd03011 | 123 | TlpA_like_ScsD_MtbDsbE TlpA-like family, suppresso | 98.53 | |
| KOG0190 | 493 | consensus Protein disulfide isomerase (prolyl 4-hy | 98.53 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 98.51 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 98.49 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 98.48 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 98.47 | |
| cd03012 | 126 | TlpA_like_DipZ_like TlpA-like family, DipZ-like su | 98.44 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 98.42 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.41 | |
| KOG0551 | 390 | consensus Hsp90 co-chaperone CNS1 (contains TPR re | 98.4 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 98.4 | |
| PF08534 | 146 | Redoxin: Redoxin; InterPro: IPR013740 This redoxin | 98.4 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 98.39 | |
| cd02967 | 114 | mauD Methylamine utilization (mau) D family; mauD | 98.39 | |
| TIGR02661 | 189 | MauD methylamine dehydrogenase accessory protein M | 98.38 | |
| KOG0191 | 383 | consensus Thioredoxin/protein disulfide isomerase | 98.36 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 98.36 | |
| cd02958 | 114 | UAS UAS family; UAS is a domain of unknown functio | 98.35 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 98.34 | |
| TIGR02196 | 74 | GlrX_YruB Glutaredoxin-like protein, YruB-family. | 98.34 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.34 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 98.32 | |
| COG4232 | 569 | Thiol:disulfide interchange protein [Posttranslati | 98.3 | |
| PLN02399 | 236 | phospholipid hydroperoxide glutathione peroxidase | 98.3 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 98.3 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 98.26 | |
| KOG0914 | 265 | consensus Thioredoxin-like protein [Posttranslatio | 98.26 | |
| KOG2300 | 629 | consensus Uncharacterized conserved protein [Funct | 98.26 | |
| KOG2300 | 629 | consensus Uncharacterized conserved protein [Funct | 98.24 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 98.23 | |
| KOG2501 | 157 | consensus Thioredoxin, nucleoredoxin and related p | 98.23 | |
| PTZ00056 | 199 | glutathione peroxidase; Provisional | 98.22 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 98.21 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 98.2 | |
| PF14595 | 129 | Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A. | 98.2 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 98.18 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 98.17 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 98.17 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 98.14 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 98.11 | |
| PLN02412 | 167 | probable glutathione peroxidase | 98.1 | |
| KOG0376 | 476 | consensus Serine-threonine phosphatase 2A, catalyt | 98.08 | |
| KOG0551 | 390 | consensus Hsp90 co-chaperone CNS1 (contains TPR re | 98.07 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 98.06 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 98.05 | |
| PF13728 | 215 | TraF: F plasmid transfer operon protein | 98.04 | |
| cd02960 | 130 | AGR Anterior Gradient (AGR) family; members of thi | 98.04 | |
| TIGR02200 | 77 | GlrX_actino Glutaredoxin-like protein. This family | 98.03 | |
| COG0526 | 127 | TrxA Thiol-disulfide isomerase and thioredoxins [P | 98.03 | |
| cd00340 | 152 | GSH_Peroxidase Glutathione (GSH) peroxidase family | 98.02 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 98.02 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.0 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 97.99 | |
| smart00594 | 122 | UAS UAS domain. | 97.98 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 97.97 | |
| cd02969 | 171 | PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypot | 97.95 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 97.94 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 97.93 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.92 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 97.92 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 97.89 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 97.88 | |
| KOG0911 | 227 | consensus Glutaredoxin-related protein [Posttransl | 97.88 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 97.87 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 97.87 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 97.85 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.84 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 97.82 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.82 | |
| KOG1731 | 606 | consensus FAD-dependent sulfhydryl oxidase/quiesci | 97.81 | |
| cd03014 | 143 | PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical | 97.8 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.79 | |
| KOG0191 | 383 | consensus Thioredoxin/protein disulfide isomerase | 97.79 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 97.79 | |
| TIGR02540 | 153 | gpx7 putative glutathione peroxidase Gpx7. This mo | 97.76 | |
| cd03017 | 140 | PRX_BCP Peroxiredoxin (PRX) family, Bacterioferrit | 97.76 | |
| cd01659 | 69 | TRX_superfamily Thioredoxin (TRX) superfamily; a l | 97.74 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.74 | |
| TIGR02739 | 256 | TraF type-F conjugative transfer system pilin asse | 97.74 | |
| PTZ00256 | 183 | glutathione peroxidase; Provisional | 97.73 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 97.73 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 97.72 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 97.7 | |
| COG2143 | 182 | Thioredoxin-related protein [Posttranslational mod | 97.7 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 97.68 | |
| PF13192 | 76 | Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZY | 97.67 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 97.67 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.64 | |
| PRK00522 | 167 | tpx lipid hydroperoxide peroxidase; Provisional | 97.64 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 97.61 | |
| cd02976 | 73 | NrdH NrdH-redoxin (NrdH) family; NrdH is a small m | 97.58 | |
| PF13899 | 82 | Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_ | 97.58 | |
| cd03015 | 173 | PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2- | 97.58 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 97.57 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.57 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 97.54 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 97.54 | |
| PRK11200 | 85 | grxA glutaredoxin 1; Provisional | 97.52 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 97.52 | |
| PF00578 | 124 | AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Per | 97.52 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.52 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 97.49 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.48 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 97.46 | |
| PRK09437 | 154 | bcp thioredoxin-dependent thiol peroxidase; Review | 97.43 | |
| PF11009 | 105 | DUF2847: Protein of unknown function (DUF2847); In | 97.43 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 97.42 | |
| TIGR02180 | 84 | GRX_euk Glutaredoxin. This model represents eukary | 97.41 | |
| KOG0530 | 318 | consensus Protein farnesyltransferase, alpha subun | 97.4 | |
| KOG0913 | 248 | consensus Thiol-disulfide isomerase and thioredoxi | 97.37 | |
| PRK13703 | 248 | conjugal pilus assembly protein TraF; Provisional | 97.37 | |
| cd02970 | 149 | PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypot | 97.34 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 97.34 | |
| KOG3414 | 142 | consensus Component of the U4/U6.U5 snRNP/mitosis | 97.34 | |
| KOG0530 | 318 | consensus Protein farnesyltransferase, alpha subun | 97.33 | |
| TIGR03137 | 187 | AhpC peroxiredoxin. This gene contains two invaria | 97.31 | |
| cd03018 | 149 | PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-lik | 97.3 | |
| KOG3783 | 546 | consensus Uncharacterized conserved protein [Funct | 97.3 | |
| KOG3783 | 546 | consensus Uncharacterized conserved protein [Funct | 97.26 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.24 | |
| PF06110 | 119 | DUF953: Eukaryotic protein of unknown function (DU | 97.24 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 97.23 | |
| PF03190 | 163 | Thioredox_DsbH: Protein of unknown function, DUF25 | 97.21 | |
| PRK13190 | 202 | putative peroxiredoxin; Provisional | 97.16 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 97.15 | |
| KOG3170 | 240 | consensus Conserved phosducin-like protein [Signal | 97.14 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 97.1 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 97.08 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.07 | |
| cd02991 | 116 | UAS_ETEA UAS family, ETEA subfamily; composed of p | 97.06 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 97.01 | |
| TIGR02183 | 86 | GRXA Glutaredoxin, GrxA family. This model include | 97.01 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 97.0 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 97.0 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 96.97 | |
| TIGR03143 | 555 | AhpF_homolog putative alkyl hydroperoxide reductas | 96.97 | |
| cd02971 | 140 | PRX_family Peroxiredoxin (PRX) family; composed of | 96.96 | |
| PRK15000 | 200 | peroxidase; Provisional | 96.94 | |
| PRK10877 | 232 | protein disulfide isomerase II DsbC; Provisional | 96.92 | |
| KOG3425 | 128 | consensus Uncharacterized conserved protein [Funct | 96.92 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 96.91 | |
| cd02968 | 142 | SCO SCO (an acronym for Synthesis of Cytochrome c | 96.9 | |
| PRK13599 | 215 | putative peroxiredoxin; Provisional | 96.9 | |
| PRK10329 | 81 | glutaredoxin-like protein; Provisional | 96.9 | |
| KOG3171 | 273 | consensus Conserved phosducin-like protein [Signal | 96.88 | |
| PRK10382 | 187 | alkyl hydroperoxide reductase subunit C; Provision | 96.87 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 96.86 | |
| TIGR02194 | 72 | GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-red | 96.84 | |
| KOG3824 | 472 | consensus Huntingtin interacting protein HYPE [Gen | 96.84 | |
| PF12968 | 144 | DUF3856: Domain of Unknown Function (DUF3856); Int | 96.79 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 96.79 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 96.76 | |
| KOG1463 | 411 | consensus 26S proteasome regulatory complex, subun | 96.74 | |
| cd03023 | 154 | DsbA_Com1_like DsbA family, Com1-like subfamily; c | 96.73 | |
| PRK13189 | 222 | peroxiredoxin; Provisional | 96.73 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 96.72 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 96.7 | |
| cd03016 | 203 | PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX sub | 96.69 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 96.68 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 96.62 | |
| PF00462 | 60 | Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Gl | 96.62 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.58 | |
| COG5159 | 421 | RPN6 26S proteasome regulatory complex component [ | 96.55 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 96.54 | |
| cd03020 | 197 | DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamil | 96.53 | |
| PF07449 | 107 | HyaE: Hydrogenase-1 expression protein HyaE; Inter | 96.52 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 96.52 | |
| PRK10606 | 183 | btuE putative glutathione peroxidase; Provisional | 96.51 | |
| PRK15317 | 517 | alkyl hydroperoxide reductase subunit F; Provision | 96.48 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 96.48 | |
| PRK13191 | 215 | putative peroxiredoxin; Provisional | 96.47 | |
| PRK13184 | 932 | pknD serine/threonine-protein kinase; Reviewed | 96.45 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 96.45 | |
| COG3914 | 620 | Spy Predicted O-linked N-acetylglucosamine transfe | 96.43 | |
| KOG0128 | 881 | consensus RNA-binding protein SART3 (RRM superfami | 96.4 | |
| KOG4814 | 872 | consensus Uncharacterized conserved protein [Funct | 96.37 | |
| PF02966 | 133 | DIM1: Mitosis protein DIM1; InterPro: IPR004123 Th | 96.37 | |
| cd03419 | 82 | GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX h | 96.35 | |
| TIGR02190 | 79 | GlrX-dom Glutaredoxin-family domain. This C-termin | 96.32 | |
| PTZ00137 | 261 | 2-Cys peroxiredoxin; Provisional | 96.3 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 96.28 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 96.28 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 96.28 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 96.27 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 96.25 | |
| PF12968 | 144 | DUF3856: Domain of Unknown Function (DUF3856); Int | 96.24 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 96.19 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 96.18 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 96.15 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.14 | |
| KOG0546 | 372 | consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos | 96.1 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 96.08 | |
| KOG3824 | 472 | consensus Huntingtin interacting protein HYPE [Gen | 96.06 | |
| cd02066 | 72 | GRX_family Glutaredoxin (GRX) family; composed of | 96.04 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 96.02 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 96.01 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 95.99 | |
| PF04781 | 111 | DUF627: Protein of unknown function (DUF627); Inte | 95.95 | |
| TIGR03140 | 515 | AhpF alkyl hydroperoxide reductase, F subunit. Thi | 95.95 | |
| PF13462 | 162 | Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DV | 95.91 | |
| KOG3807 | 556 | consensus Predicted membrane protein ST7 (tumor su | 95.85 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 95.85 | |
| PF04781 | 111 | DUF627: Protein of unknown function (DUF627); Inte | 95.84 | |
| cd02983 | 130 | P5_C P5 family, C-terminal redox inactive TRX-like | 95.82 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 95.74 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 95.71 |
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=332.46 Aligned_cols=332 Identities=20% Similarity=0.180 Sum_probs=312.9
Q ss_pred CCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHH
Q 005108 236 GICGGDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQR 315 (714)
Q Consensus 236 ~~~p~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~ 315 (714)
.++|....++..+|+.+-.+|+..+|..+|.+|++.+|..+.+|.++|.++..+|+...|++.|++|++++|++.++|++
T Consensus 178 qlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiN 257 (966)
T KOG4626|consen 178 QLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYIN 257 (966)
T ss_pred hcCcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhh
Confidence 67888889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 005108 316 LGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEA 395 (714)
Q Consensus 316 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~ 395 (714)
||.+|...+.+++|+..|.+++...... ...+-+++.+|..+|+.+-|+..|+++++..|.+ +..+.++|.+
T Consensus 258 LGnV~ke~~~~d~Avs~Y~rAl~lrpn~-------A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F-~~Ay~NlanA 329 (966)
T KOG4626|consen 258 LGNVYKEARIFDRAVSCYLRALNLRPNH-------AVAHGNLACIYYEQGLLDLAIDTYKRALELQPNF-PDAYNNLANA 329 (966)
T ss_pred HHHHHHHHhcchHHHHHHHHHHhcCCcc-------hhhccceEEEEeccccHHHHHHHHHHHHhcCCCc-hHHHhHHHHH
Confidence 9999999999999999999998632222 2456677888999999999999999999999985 6778889999
Q ss_pred HHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHH
Q 005108 396 LLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLN 475 (714)
Q Consensus 396 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 475 (714)
+-..|+..+|+.+|++++.+.|.. +.+.+++|.+|.++|++++|..+|+++++..|....+...+
T Consensus 330 Lkd~G~V~ea~~cYnkaL~l~p~h--------------adam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNL- 394 (966)
T KOG4626|consen 330 LKDKGSVTEAVDCYNKALRLCPNH--------------ADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNL- 394 (966)
T ss_pred HHhccchHHHHHHHHHHHHhCCcc--------------HHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhH-
Confidence 999999999999999999999999 88999999999999999999999999999999999888766
Q ss_pred hHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 005108 476 NVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRA 555 (714)
Q Consensus 476 ~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 555 (714)
|.+|.++|++++|+.+|+++|++.|..++++.++|..|..+|+...|+.+|++|+.++|...+++.+||
T Consensus 395 -----------a~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLa 463 (966)
T KOG4626|consen 395 -----------ASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLA 463 (966)
T ss_pred -----------HHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhccc
Q 005108 556 ASNSKLEKWADAVRDFEVLRRELPDDNEIAESLFHAQVSLKKSRGE 601 (714)
Q Consensus 556 ~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~L~~~~~~l~~~~~~ 601 (714)
.+|...|+..+|+..|+.++++.|+.+++..+|..+...+..|...
T Consensus 464 si~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D~ 509 (966)
T KOG4626|consen 464 SIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTDY 509 (966)
T ss_pred HHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccch
Confidence 9999999999999999999999999999999999999999887653
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-37 Score=313.45 Aligned_cols=339 Identities=20% Similarity=0.193 Sum_probs=256.7
Q ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 005108 237 ICGGDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRL 316 (714)
Q Consensus 237 ~~p~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l 316 (714)
..|.-+++|-++|+.+...|++++|+.+|+.+++++|++.++|.++|.++...|+.+.|.++|..+++++|+...+...+
T Consensus 111 ~~~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~l 190 (966)
T KOG4626|consen 111 KNPQGAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDL 190 (966)
T ss_pred ccchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcch
Confidence 46667778888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 005108 317 GSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEAL 396 (714)
Q Consensus 317 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~ 396 (714)
|.++..+|+..+|...|.++++... .....|.+++..+...|+...|+..|+++++++|.+. ..|.++|.+|
T Consensus 191 gnLlka~Grl~ea~~cYlkAi~~qp-------~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~-dAYiNLGnV~ 262 (966)
T KOG4626|consen 191 GNLLKAEGRLEEAKACYLKAIETQP-------CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFL-DAYINLGNVY 262 (966)
T ss_pred hHHHHhhcccchhHHHHHHHHhhCC-------ceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcch-HHHhhHHHHH
Confidence 8888888888888888888876222 1123355556666677777777777777777777653 3444577777
Q ss_pred HHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHh
Q 005108 397 LKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNN 476 (714)
Q Consensus 397 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 476 (714)
...+.+++|+.+|.+++.+.|++ +.++.++|.+|..+|..|-|+..|++++++.|+.++++..+.+
T Consensus 263 ke~~~~d~Avs~Y~rAl~lrpn~--------------A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~Nlan 328 (966)
T KOG4626|consen 263 KEARIFDRAVSCYLRALNLRPNH--------------AVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLAN 328 (966)
T ss_pred HHHhcchHHHHHHHHHHhcCCcc--------------hhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHH
Confidence 77777777777777777777776 6666666666666677777777777776666666666665533
Q ss_pred H----------------------HHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHH
Q 005108 477 V----------------------KLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSV 534 (714)
Q Consensus 477 l----------------------~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 534 (714)
. .-++...++|+++.++|++++|..+|+++++..|....++.+||.+|.++|++++|+
T Consensus 329 ALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai 408 (966)
T KOG4626|consen 329 ALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAI 408 (966)
T ss_pred HHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHH
Confidence 1 011223355888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhh
Q 005108 535 EDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAESLFHAQVSLKK 597 (714)
Q Consensus 535 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~L~~~~~~l~~ 597 (714)
.+|+++++++|...+++.++|..|..+|+...|+.+|.+|+.++|...++..+|.-+++.-+.
T Consensus 409 ~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGn 471 (966)
T KOG4626|consen 409 MCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGN 471 (966)
T ss_pred HHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCC
Confidence 888888888888888888888888888888888888888888888888888888777665543
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-31 Score=251.55 Aligned_cols=356 Identities=19% Similarity=0.284 Sum_probs=323.7
Q ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 005108 237 ICGGDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRL 316 (714)
Q Consensus 237 ~~p~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l 316 (714)
.+|.+++-++.+|..++..|++.+|+..|..|++.+|++..+++.+|.+|..+|+-.-|+..+.+++++.|+...+....
T Consensus 33 ~~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQR 112 (504)
T KOG0624|consen 33 ASPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQR 112 (504)
T ss_pred CCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHh
Confidence 45678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHhhcCCCCh-----HHHHHHHHHHH---HHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH
Q 005108 317 GSLLVRLGQVENARRHLCLSGQQADP-----TEVHRLQVVEK---HLSKCTDARKVGDWKSALREGDAAIAAGADFSPQL 388 (714)
Q Consensus 317 a~~~~~~g~~~~A~~~~~~al~~~~~-----~~~~~l~~~~~---~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~ 388 (714)
|.++.++|++++|...|.+.++.... .....+..+.. .......+...|++..|++....+++..|- ...+
T Consensus 113 g~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~W-da~l 191 (504)
T KOG0624|consen 113 GVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPW-DASL 191 (504)
T ss_pred chhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcc-hhHH
Confidence 99999999999999999999983321 12223333333 333445567789999999999999999885 5677
Q ss_pred HHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCH
Q 005108 389 SMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNV 468 (714)
Q Consensus 389 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 468 (714)
+..++.||...|+...|+..++.+-++..++ ...++.++.+++..|+.+.++...+++++++|++.
T Consensus 192 ~~~Rakc~i~~~e~k~AI~Dlk~askLs~Dn--------------Te~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK 257 (504)
T KOG0624|consen 192 RQARAKCYIAEGEPKKAIHDLKQASKLSQDN--------------TEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHK 257 (504)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhccccc--------------hHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchh
Confidence 8889999999999999999999999999988 77899999999999999999999999999999999
Q ss_pred HHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHH----HHHHHHHHHhCCHHHHHHHHHHHHHhC
Q 005108 469 EVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLY----CNRAACWFKLGQWERSVEDSNQALLIQ 544 (714)
Q Consensus 469 ~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~----~~la~~~~~~g~~~~A~~~~~~al~~~ 544 (714)
.++-.+..++.+.....-+......++|.++++..++.++.+|..+.+. ..+..|+..-|++.+|+..+.++++++
T Consensus 258 ~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d 337 (504)
T KOG0624|consen 258 LCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDID 337 (504)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcC
Confidence 9999999998888888888889999999999999999999999865443 447889999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhccccccccc
Q 005108 545 PNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAESLFHAQVSLKKSRGEEVYNMK 607 (714)
Q Consensus 545 p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~L~~~~~~l~~~~~~~~~~~~ 607 (714)
|++.+++..++.+|+....|++|+..|++|.+.++++..+.+.+.++++..++....+||++.
T Consensus 338 ~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGle~Akrlkkqs~kRDYYKIL 400 (504)
T KOG0624|consen 338 PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGLERAKRLKKQSGKRDYYKIL 400 (504)
T ss_pred chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHhccchHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999999875
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-30 Score=295.75 Aligned_cols=316 Identities=21% Similarity=0.251 Sum_probs=275.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 005108 242 AEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLV 321 (714)
Q Consensus 242 ~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~ 321 (714)
+..+..+|+.++..|+|++|+.+|+++++..|+ +..|.++|.||..+|++++|+..|+++++++|++..+|+.+|.+|.
T Consensus 127 a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 127 AAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 567889999999999999999999999999996 7899999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHhhcCCCChHHHH---HHHH--------------------------HHHH------------------
Q 005108 322 RLGQVENARRHLCLSGQQADPTEVH---RLQV--------------------------VEKH------------------ 354 (714)
Q Consensus 322 ~~g~~~~A~~~~~~al~~~~~~~~~---~l~~--------------------------~~~~------------------ 354 (714)
.+|++++|+..|..+.......... .+.. +..+
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNE 285 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccc
Confidence 9999999999887654321111000 0000 0000
Q ss_pred ---------HHHhHH---HHHcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCC
Q 005108 355 ---------LSKCTD---ARKVGDWKSALREGDAAIAAGA--DFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTV 420 (714)
Q Consensus 355 ---------~~~a~~---~~~~g~~~~Al~~~~~al~~~p--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 420 (714)
+.++.. ....++|++|++.|++++..+. ......+..+|.++..+|++++|+..|+++++++|..
T Consensus 286 ~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~- 364 (615)
T TIGR00990 286 LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRV- 364 (615)
T ss_pred cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc-
Confidence 001110 1123689999999999998752 2345667789999999999999999999999999998
Q ss_pred CchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHH
Q 005108 421 SSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEAC 500 (714)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~ 500 (714)
...|+.+|.++..+|++++|+..|+++++.+|++..+++.+ |.+++..|++++|+
T Consensus 365 -------------~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l------------g~~~~~~g~~~~A~ 419 (615)
T TIGR00990 365 -------------TQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHR------------AQLHFIKGEFAQAG 419 (615)
T ss_pred -------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH------------HHHHHHcCCHHHHH
Confidence 77899999999999999999999999999999999988866 99999999999999
Q ss_pred HHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Q 005108 501 QAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPD 580 (714)
Q Consensus 501 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~ 580 (714)
.+|+++++++|++...+.++|.++.++|++++|+..|+++++..|+++.++..+|.++..+|++++|++.|+++++++|+
T Consensus 420 ~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~ 499 (615)
T TIGR00990 420 KDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKE 499 (615)
T ss_pred HHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CHHH
Q 005108 581 DNEI 584 (714)
Q Consensus 581 ~~~~ 584 (714)
+...
T Consensus 500 ~~~~ 503 (615)
T TIGR00990 500 TKPM 503 (615)
T ss_pred cccc
Confidence 6443
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-29 Score=286.09 Aligned_cols=315 Identities=13% Similarity=-0.015 Sum_probs=286.7
Q ss_pred hhhcCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHH
Q 005108 232 RNRGGICGGDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWR 311 (714)
Q Consensus 232 ~~~~~~~p~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 311 (714)
.......|+++++++.+|......|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++++|++..
T Consensus 66 ~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~ 145 (656)
T PRK15174 66 SDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQ 145 (656)
T ss_pred HHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Confidence 34445789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 005108 312 AHQRLGSLLVRLGQVENARRHLCLSGQ-QADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSM 390 (714)
Q Consensus 312 a~~~la~~~~~~g~~~~A~~~~~~al~-~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~ 390 (714)
++..++.++...|++++|+..+.+++. .+++... +... ..+...|++++|+..++++++..|........
T Consensus 146 a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a--------~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~ 216 (656)
T PRK15174 146 IFALHLRTLVLMDKELQAISLARTQAQEVPPRGDM--------IATC-LSFLNKSRLPEDHDLARALLPFFALERQESAG 216 (656)
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHH--------HHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHH
Confidence 999999999999999999999998765 2232221 1111 23678899999999999999987754455556
Q ss_pred HHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHH----HHHHHHHHhccCCC
Q 005108 391 CRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFEN----AVTAAEKAGQIDPR 466 (714)
Q Consensus 391 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~----A~~~~~~al~~~p~ 466 (714)
.++.++...|++++|+..|+++++.+|++ ..+++.+|.++...|++++ |+..|+++++++|+
T Consensus 217 ~l~~~l~~~g~~~eA~~~~~~al~~~p~~--------------~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~ 282 (656)
T PRK15174 217 LAVDTLCAVGKYQEAIQTGESALARGLDG--------------AALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD 282 (656)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCCC--------------HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC
Confidence 67889999999999999999999999998 7889999999999999996 89999999999999
Q ss_pred CHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Q 005108 467 NVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPN 546 (714)
Q Consensus 467 ~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 546 (714)
+..++..+ |.++...|++++|+.+|+++++++|+++.++.++|.+|.+.|++++|+..|+++++.+|+
T Consensus 283 ~~~a~~~l------------g~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~ 350 (656)
T PRK15174 283 NVRIVTLY------------ADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGV 350 (656)
T ss_pred CHHHHHHH------------HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence 99988876 999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Q 005108 547 YTKALLRRAASNSKLEKWADAVRDFEVLRRELPDD 581 (714)
Q Consensus 547 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~ 581 (714)
+...+..+|.++...|++++|+..|+++++.+|++
T Consensus 351 ~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~ 385 (656)
T PRK15174 351 TSKWNRYAAAALLQAGKTSEAESVFEHYIQARASH 385 (656)
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhh
Confidence 98888888999999999999999999999998875
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.6e-29 Score=280.98 Aligned_cols=337 Identities=15% Similarity=0.122 Sum_probs=273.4
Q ss_pred hhhhhcCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Q 005108 230 VNRNRGGICGGDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNY 309 (714)
Q Consensus 230 ~~~~~~~~~p~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 309 (714)
.+.....+.|+ +..+.++|.+|...|++++|+..|+++++++|++..+|+.+|.+|..+|++++|+..|..+..+++.+
T Consensus 149 ~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~ 227 (615)
T TIGR00990 149 LYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFR 227 (615)
T ss_pred HHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence 33333446664 77899999999999999999999999999999999999999999999999999998886665443221
Q ss_pred H------------------------------HHH---------------------------------HHHHHHH---HHc
Q 005108 310 W------------------------------RAH---------------------------------QRLGSLL---VRL 323 (714)
Q Consensus 310 ~------------------------------~a~---------------------------------~~la~~~---~~~ 323 (714)
. ..+ ..++..+ ...
T Consensus 228 ~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~ 307 (615)
T TIGR00990 228 NEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKAD 307 (615)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhh
Confidence 1 011 1111111 113
Q ss_pred CCHHHHHHHHHhhcCCC--ChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 005108 324 GQVENARRHLCLSGQQA--DPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQ 401 (714)
Q Consensus 324 g~~~~A~~~~~~al~~~--~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~ 401 (714)
++|++|+..|++++... .+. ....+..++.++...|++++|+..|+++++.+|.. ...+..+|.++..+|+
T Consensus 308 ~~y~~A~~~~~~al~~~~~~~~------~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~-~~~~~~la~~~~~~g~ 380 (615)
T TIGR00990 308 ESYEEAARAFEKALDLGKLGEK------EAIALNLRGTFKCLKGKHLEALADLSKSIELDPRV-TQSYIKRASMNLELGD 380 (615)
T ss_pred hhHHHHHHHHHHHHhcCCCChh------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHCCC
Confidence 57899999999998743 222 23456777888899999999999999999999874 5566679999999999
Q ss_pred HHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHH
Q 005108 402 LEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVA 481 (714)
Q Consensus 402 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~ 481 (714)
+++|+..|+++++.+|++ ..+++.+|.++...|++++|+.+|+++++++|++...+..+
T Consensus 381 ~~eA~~~~~~al~~~p~~--------------~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~l------- 439 (615)
T TIGR00990 381 PDKAEEDFDKALKLNSED--------------PDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQL------- 439 (615)
T ss_pred HHHHHHHHHHHHHhCCCC--------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHH-------
Confidence 999999999999999988 77899999999999999999999999999999998887765
Q ss_pred HHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH------HHHHH
Q 005108 482 RARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKA------LLRRA 555 (714)
Q Consensus 482 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~------~~~la 555 (714)
|.++.+.|++++|+..|+++++..|+++.++..+|.++..+|++++|++.|+++++++|++... ++..+
T Consensus 440 -----a~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a 514 (615)
T TIGR00990 440 -----GVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKA 514 (615)
T ss_pred -----HHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHH
Confidence 8899999999999999999999999999999999999999999999999999999998875332 23333
Q ss_pred HHH-HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhcc
Q 005108 556 ASN-SKLEKWADAVRDFEVLRRELPDDNEIAESLFHAQVSLKKSRG 600 (714)
Q Consensus 556 ~~~-~~~g~~~eA~~~~~~al~~~p~~~~~~~~L~~~~~~l~~~~~ 600 (714)
..+ ...|++++|+.+|+++++++|++..++..+.+++...++..+
T Consensus 515 ~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~e 560 (615)
T TIGR00990 515 LALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDE 560 (615)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHH
Confidence 333 446899999999999999999998888888887777665443
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3e-29 Score=251.20 Aligned_cols=332 Identities=24% Similarity=0.331 Sum_probs=284.6
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 005108 241 DAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLL 320 (714)
Q Consensus 241 ~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 320 (714)
-+..+...|+.++.+|+|++||++|++||+++|+.+..|.+++.||..+|+|++.++.+.++++++|++..++++.+..+
T Consensus 114 ~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~ 193 (606)
T KOG0547|consen 114 YAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAH 193 (606)
T ss_pred HHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHH
Confidence 46788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHhh------------------c------------C----CCChHH----------------------
Q 005108 321 VRLGQVENARRHLCLS------------------G------------Q----QADPTE---------------------- 344 (714)
Q Consensus 321 ~~~g~~~~A~~~~~~a------------------l------------~----~~~~~~---------------------- 344 (714)
..+|++.+|+....-. + . +.-|..
T Consensus 194 E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~ 273 (606)
T KOG0547|consen 194 EQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKS 273 (606)
T ss_pred HhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCC
Confidence 9999999998754311 0 0 000000
Q ss_pred -------HHHHH---------------------------------------HHHHHHHHhHHHHHcCCHHHHHHHHHHHH
Q 005108 345 -------VHRLQ---------------------------------------VVEKHLSKCTDARKVGDWKSALREGDAAI 378 (714)
Q Consensus 345 -------~~~l~---------------------------------------~~~~~~~~a~~~~~~g~~~~Al~~~~~al 378 (714)
...+. .++.++..+.-+.-.|+...|...|+++|
T Consensus 274 ~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I 353 (606)
T KOG0547|consen 274 DKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAI 353 (606)
T ss_pred ccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHH
Confidence 00000 01222334444556788999999999999
Q ss_pred HcCCCCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHH
Q 005108 379 AAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAE 458 (714)
Q Consensus 379 ~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 458 (714)
.++|.+. .+|..++.+|.+..+.++-...|.++..++|.+ +.+|+.+|++++-++++++|+..|+
T Consensus 354 ~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n--------------~dvYyHRgQm~flL~q~e~A~aDF~ 418 (606)
T KOG0547|consen 354 KLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLDPEN--------------PDVYYHRGQMRFLLQQYEEAIADFQ 418 (606)
T ss_pred hcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCC--------------CchhHhHHHHHHHHHHHHHHHHHHH
Confidence 9999754 446679999999999999999999999999999 7789999999999999999999999
Q ss_pred HHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHH
Q 005108 459 KAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSN 538 (714)
Q Consensus 459 ~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 538 (714)
+++.++|++.-.+..+ +.++++++++++++..|+++++..|+.++.|...|.++..+++|++|++.|+
T Consensus 419 Kai~L~pe~~~~~iQl------------~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD 486 (606)
T KOG0547|consen 419 KAISLDPENAYAYIQL------------CCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYD 486 (606)
T ss_pred HHhhcChhhhHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHH
Confidence 9999999999888766 8899999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCC------CHHHHHHHHHHHH-HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhc
Q 005108 539 QALLIQPN------YTKALLRRAASNS-KLEKWADAVRDFEVLRRELPDDNEIAESLFHAQVSLKKSR 599 (714)
Q Consensus 539 ~al~~~p~------~~~~~~~la~~~~-~~g~~~eA~~~~~~al~~~p~~~~~~~~L~~~~~~l~~~~ 599 (714)
+++++.|. ++..+...|.+.. -.+++.+|+.++++|++++|....++..|.+...+..+.+
T Consensus 487 ~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~ 554 (606)
T KOG0547|consen 487 KAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKID 554 (606)
T ss_pred HHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHH
Confidence 99999998 6666666665543 2489999999999999999999999999998877766543
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-27 Score=288.79 Aligned_cols=321 Identities=15% Similarity=0.143 Sum_probs=266.7
Q ss_pred hhhhcCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH--------------HHHHHHHHHHHCCCHHHHH
Q 005108 231 NRNRGGICGGDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAA--------------FRSNRAAALTGLGRIGEAV 296 (714)
Q Consensus 231 ~~~~~~~~p~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~--------------~~~~la~~~~~~g~~~~A~ 296 (714)
+.....++|++++++..+|.+++..|++++|+.+|+++++.+|++.. ....+|.++...|++++|+
T Consensus 292 l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~ 371 (1157)
T PRK11447 292 LQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAE 371 (1157)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHH
Confidence 33344578999999999999999999999999999999999997642 2235588899999999999
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC--CCChHHHHHHHH------------------------
Q 005108 297 KECEEAVRLDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQ--QADPTEVHRLQV------------------------ 350 (714)
Q Consensus 297 ~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~--~~~~~~~~~l~~------------------------ 350 (714)
..|+++++++|++..++..+|.++..+|++++|+++|+++++ +.+......+..
T Consensus 372 ~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~ 451 (1157)
T PRK11447 372 RLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRS 451 (1157)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHH
Confidence 999999999999999999999999999999999999999987 222222221111
Q ss_pred ---------HHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCC
Q 005108 351 ---------VEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVS 421 (714)
Q Consensus 351 ---------~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 421 (714)
...+..++..+...|++++|++.|+++++.+|+. ..++..++.+|...|++++|+..|+++++.+|.+
T Consensus 452 ~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~-~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~-- 528 (1157)
T PRK11447 452 IDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGS-VWLTYRLAQDLRQAGQRSQADALMRRLAQQKPND-- 528 (1157)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--
Confidence 1123346677888999999999999999999984 5677789999999999999999999999999988
Q ss_pred chhhhhhhhhhhHHHHHHH--------------------------------------------HHHHHHhCcHHHHHHHH
Q 005108 422 SSQTRFFGMLSEAYTFFVR--------------------------------------------AQIEMALGRFENAVTAA 457 (714)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~l--------------------------------------------a~~~~~~g~~~~A~~~~ 457 (714)
...++.+ +..+...|++++|+.++
T Consensus 529 ------------~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l 596 (1157)
T PRK11447 529 ------------PEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALL 596 (1157)
T ss_pred ------------HHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHH
Confidence 3334444 44444555555555444
Q ss_pred HHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Q 005108 458 EKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDS 537 (714)
Q Consensus 458 ~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 537 (714)
+ ..|.++..+.. +|.++.+.|++++|+..|+++++.+|+++.++..++.+|...|++++|++.|
T Consensus 597 ~----~~p~~~~~~~~------------La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l 660 (1157)
T PRK11447 597 R----QQPPSTRIDLT------------LADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQL 660 (1157)
T ss_pred H----hCCCCchHHHH------------HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4 34555555443 4999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCH
Q 005108 538 NQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDN 582 (714)
Q Consensus 538 ~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~ 582 (714)
+++++..|++..++..+|.++..+|++++|+++|++++...|+++
T Consensus 661 ~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~ 705 (1157)
T PRK11447 661 AKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQP 705 (1157)
T ss_pred HHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCC
Confidence 999999999999999999999999999999999999999877654
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-27 Score=267.51 Aligned_cols=315 Identities=12% Similarity=0.069 Sum_probs=280.5
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 005108 241 DAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLL 320 (714)
Q Consensus 241 ~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 320 (714)
+..-+...+..++..|++++|+..++.++...|++..+++.++.+....|++++|+..|+++++.+|++..++..+|.++
T Consensus 41 ~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l 120 (656)
T PRK15174 41 NEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVL 120 (656)
T ss_pred cccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 44556677888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 005108 321 VRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLH 400 (714)
Q Consensus 321 ~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g 400 (714)
...|++++|+..|++++...+.. ...+..++.++...|++++|+..+++++...|+... .+... ..+...|
T Consensus 121 ~~~g~~~~Ai~~l~~Al~l~P~~-------~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~-a~~~~-~~l~~~g 191 (656)
T PRK15174 121 LKSKQYATVADLAEQAWLAFSGN-------SQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGD-MIATC-LSFLNKS 191 (656)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCc-------HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHH-HHHHH-HHHHHcC
Confidence 99999999999999998732221 134556677799999999999999999999997544 44434 3588999
Q ss_pred CHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHH
Q 005108 401 QLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLV 480 (714)
Q Consensus 401 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~ 480 (714)
++++|+..++++++.+|... ...+..++.++...|++++|+..|+++++.+|++..++..+
T Consensus 192 ~~~eA~~~~~~~l~~~~~~~-------------~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~L------ 252 (656)
T PRK15174 192 RLPEDHDLARALLPFFALER-------------QESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSL------ 252 (656)
T ss_pred CHHHHHHHHHHHHhcCCCcc-------------hhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHH------
Confidence 99999999999998876431 22345668889999999999999999999999999888766
Q ss_pred HHHHHHHhHHhhCcCHHH----HHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 005108 481 ARARARGNDLFKSERFTE----ACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAA 556 (714)
Q Consensus 481 ~~~~~~g~~~~~~g~~~~----A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 556 (714)
|.++...|++++ |+..|+++++++|++..++..+|.++...|++++|+..++++++++|++..++..+|.
T Consensus 253 ------g~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~ 326 (656)
T PRK15174 253 ------GLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYAR 326 (656)
T ss_pred ------HHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 999999999996 8999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 005108 557 SNSKLEKWADAVRDFEVLRRELPDDNEIAESLF 589 (714)
Q Consensus 557 ~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~L~ 589 (714)
+|.++|++++|+..|+++++.+|++......+.
T Consensus 327 ~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a 359 (656)
T PRK15174 327 ALRQVGQYTAASDEFVQLAREKGVTSKWNRYAA 359 (656)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCccchHHHHHHH
Confidence 999999999999999999999999876554433
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.9e-27 Score=282.61 Aligned_cols=328 Identities=17% Similarity=0.123 Sum_probs=281.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHH--------------
Q 005108 246 KRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWR-------------- 311 (714)
Q Consensus 246 ~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-------------- 311 (714)
..+|..++..|++++|+..|+++++.+|+++.++..+|.+|.++|++++|+.+|+++++++|++..
T Consensus 273 ~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~ 352 (1157)
T PRK11447 273 RAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYW 352 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHH
Confidence 356899999999999999999999999999999999999999999999999999999999997642
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH--
Q 005108 312 AHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLS-- 389 (714)
Q Consensus 312 a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~-- 389 (714)
....+|.++...|++++|+..|++++...+.. ...++.++.++...|++++|++.|+++++.+|++...+.
T Consensus 353 ~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~-------~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L 425 (1157)
T PRK11447 353 LLIQQGDAALKANNLAQAERLYQQARQVDNTD-------SYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGL 425 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 22355888999999999999999999743322 134667788899999999999999999999997543221
Q ss_pred ---------------------------------------HHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhh
Q 005108 390 ---------------------------------------MCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGM 430 (714)
Q Consensus 390 ---------------------------------------~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 430 (714)
..++.++...|++++|++.|+++++.+|++
T Consensus 426 ~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~----------- 494 (1157)
T PRK11447 426 ANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGS----------- 494 (1157)
T ss_pred HHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-----------
Confidence 124556677899999999999999999998
Q ss_pred hhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHH--------------------------------
Q 005108 431 LSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVK-------------------------------- 478 (714)
Q Consensus 431 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~-------------------------------- 478 (714)
..+++.+|.+|...|++++|+..|+++++.+|++++.++.+..+.
T Consensus 495 ---~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l 571 (1157)
T PRK11447 495 ---VWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRL 571 (1157)
T ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHH
Confidence 778999999999999999999999999999999988766442210
Q ss_pred HHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005108 479 LVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASN 558 (714)
Q Consensus 479 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 558 (714)
.......++..+...|++++|+.+++ ..|.++.++..+|.++.+.|++++|++.|+++++.+|+++.+++.++.+|
T Consensus 572 ~~~~~l~~a~~l~~~G~~~eA~~~l~----~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~ 647 (1157)
T PRK11447 572 QSDQVLETANRLRDSGKEAEAEALLR----QQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVD 647 (1157)
T ss_pred hhhHHHHHHHHHHHCCCHHHHHHHHH----hCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 00112356778888999999998876 57899999999999999999999999999999999999999999999999
Q ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhh
Q 005108 559 SKLEKWADAVRDFEVLRRELPDDNEIAESLFHAQVSLKKS 598 (714)
Q Consensus 559 ~~~g~~~eA~~~~~~al~~~p~~~~~~~~L~~~~~~l~~~ 598 (714)
...|++++|++.|+++++..|++..+...+..++...++.
T Consensus 648 ~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~ 687 (1157)
T PRK11447 648 IAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDT 687 (1157)
T ss_pred HHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCH
Confidence 9999999999999999999999999888887776654443
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.96 E-value=2e-26 Score=275.97 Aligned_cols=338 Identities=21% Similarity=0.256 Sum_probs=286.7
Q ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 005108 237 ICGGDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRL 316 (714)
Q Consensus 237 ~~p~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l 316 (714)
..|+++..+..+|..+...|++++|+.+|+++++.+|++..+++.++.++...|++++|++.|+++++.+|.+..++..+
T Consensus 460 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 539 (899)
T TIGR02917 460 KQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILAL 539 (899)
T ss_pred hCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHH
Confidence 46778888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 005108 317 GSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEAL 396 (714)
Q Consensus 317 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~ 396 (714)
+.++...|++++|+..|++++...... ...++.++..+...|++++|+..+++++...|. ....+..++.++
T Consensus 540 ~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~ 611 (899)
T TIGR02917 540 AGLYLRTGNEEEAVAWLEKAAELNPQE-------IEPALALAQYYLGKGQLKKALAILNEAADAAPD-SPEAWLMLGRAQ 611 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccc-------hhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHH
Confidence 999999999999999998887632221 123455667788888888888888888887776 456677788888
Q ss_pred HHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHh
Q 005108 397 LKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNN 476 (714)
Q Consensus 397 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 476 (714)
...|++++|+..|+++++.+|.+ ...+..++.++...|++++|+..|+++++.+|++...+..+..
T Consensus 612 ~~~~~~~~A~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 677 (899)
T TIGR02917 612 LAAGDLNKAVSSFKKLLALQPDS--------------ALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQ 677 (899)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCC--------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 88888888888888888888877 6677888888888888888888888888888887776665543
Q ss_pred HH----------------------HHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHH
Q 005108 477 VK----------------------LVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSV 534 (714)
Q Consensus 477 l~----------------------~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 534 (714)
+. ....+..+|.++...|++++|+..|+++++..|++ ..+..++.++.+.|++++|+
T Consensus 678 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~ 756 (899)
T TIGR02917 678 LLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS-QNAIKLHRALLASGNTAEAV 756 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc-hHHHHHHHHHHHCCCHHHHH
Confidence 21 11223456889999999999999999999999877 77888999999999999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhh
Q 005108 535 EDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAESLFHAQVSLKK 597 (714)
Q Consensus 535 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~L~~~~~~l~~ 597 (714)
+.++++++.+|++..+++.+|.+|..+|++++|++.|+++++.+|+++.++..+..+....++
T Consensus 757 ~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 819 (899)
T TIGR02917 757 KTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD 819 (899)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc
Confidence 999999999999999999999999999999999999999999999999999988888776655
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.4e-27 Score=237.79 Aligned_cols=345 Identities=23% Similarity=0.343 Sum_probs=274.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 005108 243 EELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVR 322 (714)
Q Consensus 243 ~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~ 322 (714)
..+...|+..+..|+|+.|+.+|.++|.++|.|...|.++..+|..+|+|++|++.-.+.++++|+++..|..+|..+.-
T Consensus 3 ~e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~ 82 (539)
T KOG0548|consen 3 VELKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFG 82 (539)
T ss_pred hHHHHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHh
Confidence 45667888888999999999999999999998888888899999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHhhcCCCChHHH--HHHH---------------------------------------------------
Q 005108 323 LGQVENARRHLCLSGQQADPTEV--HRLQ--------------------------------------------------- 349 (714)
Q Consensus 323 ~g~~~~A~~~~~~al~~~~~~~~--~~l~--------------------------------------------------- 349 (714)
+|+|++|+..|.+.++....... ..+.
T Consensus 83 lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l 162 (539)
T KOG0548|consen 83 LGDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSL 162 (539)
T ss_pred cccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhh
Confidence 99999999888877752221111 0000
Q ss_pred ------------------------------------------------------------HHHHHHHHhHHHHHcCCHHH
Q 005108 350 ------------------------------------------------------------VVEKHLSKCTDARKVGDWKS 369 (714)
Q Consensus 350 ------------------------------------------------------------~~~~~~~~a~~~~~~g~~~~ 369 (714)
.......++....+..++..
T Consensus 163 ~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~ 242 (539)
T KOG0548|consen 163 KLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFET 242 (539)
T ss_pred hcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHH
Confidence 00111224556667778888
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCc
Q 005108 370 ALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGR 449 (714)
Q Consensus 370 Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 449 (714)
|++.|.+++.++ .....+.+.+.+|+..|.+.+++....++++..-.. ...+.. .+.....+|..|...++
T Consensus 243 a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~-----rad~kl--Iak~~~r~g~a~~k~~~ 313 (539)
T KOG0548|consen 243 AIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGREL-----RADYKL--IAKALARLGNAYTKRED 313 (539)
T ss_pred HHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHH-----HHHHHH--HHHHHHHhhhhhhhHHh
Confidence 888888888887 345666778888888888888888777766544332 001111 23345557888999999
Q ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHhH---------------HHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCH
Q 005108 450 FENAVTAAEKAGQIDPRNVEVAVLLNNV---------------KLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNS 514 (714)
Q Consensus 450 ~~~A~~~~~~al~~~p~~~~~~~~l~~l---------------~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~ 514 (714)
++.|+.+|++++...-. ++....+... ......+..|+.+++.|+|..|+..|.++|+.+|+++
T Consensus 314 ~~~ai~~~~kaLte~Rt-~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da 392 (539)
T KOG0548|consen 314 YEGAIKYYQKALTEHRT-PDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDA 392 (539)
T ss_pred HHHHHHHHHHHhhhhcC-HHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchh
Confidence 99999999999865443 2222222221 2344456789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005108 515 VLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAESLFHAQVS 594 (714)
Q Consensus 515 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~L~~~~~~ 594 (714)
.+|.|+|.||.++|.+..|+.+++++++++|++..+|++.|.++..+.+|++|++.|+++++.+|++.++...+.++...
T Consensus 393 ~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a 472 (539)
T KOG0548|consen 393 RLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEA 472 (539)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred hhh
Q 005108 595 LKK 597 (714)
Q Consensus 595 l~~ 597 (714)
+..
T Consensus 473 ~~~ 475 (539)
T KOG0548|consen 473 QRG 475 (539)
T ss_pred hhc
Confidence 643
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-26 Score=277.39 Aligned_cols=324 Identities=16% Similarity=0.116 Sum_probs=210.7
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 005108 238 CGGDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLG 317 (714)
Q Consensus 238 ~p~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la 317 (714)
.|.+...++.++..+...|++++|+..++++++..|.+..+|..+|.++...|++++|+..|+++++.+|.+..++..++
T Consensus 563 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 642 (899)
T TIGR02917 563 NPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLA 642 (899)
T ss_pred CccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 34444444444445555555555555555555444545555555555555555555555555555555555555555555
Q ss_pred HHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 005108 318 SLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALL 397 (714)
Q Consensus 318 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~ 397 (714)
.++...|++++|+..|++++...+.. ...+..++..+...|++++|+..++.+....|. ....+..++.++.
T Consensus 643 ~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~ 714 (899)
T TIGR02917 643 DAYAVMKNYAKAITSLKRALELKPDN-------TEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPK-AALGFELEGDLYL 714 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-ChHHHHHHHHHHH
Confidence 55555555555555555444311111 112333344455555555555555555555544 2333444566666
Q ss_pred HcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhH
Q 005108 398 KLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNV 477 (714)
Q Consensus 398 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l 477 (714)
..|++++|+..|++++...|++ ..+..++.++...|++++|++.++++++.+|++..++..+
T Consensus 715 ~~g~~~~A~~~~~~~~~~~~~~---------------~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l--- 776 (899)
T TIGR02917 715 RQKDYPAAIQAYRKALKRAPSS---------------QNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTAL--- 776 (899)
T ss_pred HCCCHHHHHHHHHHHHhhCCCc---------------hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH---
Confidence 6666666666666666665553 2345566667777777777777777777777766665544
Q ss_pred HHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005108 478 KLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAAS 557 (714)
Q Consensus 478 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 557 (714)
|.++...|++++|+.+|+++++.+|+++.++.+++.++...|+ .+|+..+++++++.|+++..+..+|.+
T Consensus 777 ---------a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~ 846 (899)
T TIGR02917 777 ---------AELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWL 846 (899)
T ss_pred ---------HHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHH
Confidence 8888889999999999999999999888899999999999998 889999999999999988888899999
Q ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhh
Q 005108 558 NSKLEKWADAVRDFEVLRRELPDDNEIAESLFHAQVSLKK 597 (714)
Q Consensus 558 ~~~~g~~~eA~~~~~~al~~~p~~~~~~~~L~~~~~~l~~ 597 (714)
+..+|++++|+++|+++++.+|.+++++..+..++...++
T Consensus 847 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~ 886 (899)
T TIGR02917 847 LVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGR 886 (899)
T ss_pred HHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCC
Confidence 9999999999999999999999988888888877766554
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.4e-28 Score=236.29 Aligned_cols=326 Identities=32% Similarity=0.457 Sum_probs=293.9
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 005108 241 DAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLL 320 (714)
Q Consensus 241 ~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 320 (714)
.++....+|..+++..+|.+|+..|..|++.+|+++..|.+++.+++.+++|++|.-.+++.++++|.....+...+.++
T Consensus 48 ~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~ 127 (486)
T KOG0550|consen 48 QAEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCH 127 (486)
T ss_pred HHHHHHhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhh
Confidence 46778889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHH
Q 005108 321 VRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADF--SPQLSMCRVEALLK 398 (714)
Q Consensus 321 ~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~--~~~~~~~la~~~~~ 398 (714)
..+++..+|...|+..- ......|+..+++.+....+. ...+....+.|+.-
T Consensus 128 ~a~~~~i~A~~~~~~~~--------------------------~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~ 181 (486)
T KOG0550|consen 128 LALSDLIEAEEKLKSKQ--------------------------AYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAF 181 (486)
T ss_pred hhhHHHHHHHHHhhhhh--------------------------hhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhh
Confidence 99999999988775210 001223444444444443221 13444558999999
Q ss_pred cCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHH
Q 005108 399 LHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVK 478 (714)
Q Consensus 399 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~ 478 (714)
++++++|...--..+++++.+ .++++..|.+++...+.+.|+..|++++.++|++...-.....++
T Consensus 182 ~~~~~~a~~ea~~ilkld~~n--------------~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k 247 (486)
T KOG0550|consen 182 LGDYDEAQSEAIDILKLDATN--------------AEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPK 247 (486)
T ss_pred cccchhHHHHHHHHHhcccch--------------hHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHH
Confidence 999999999999999999999 889999999999999999999999999999999999888888888
Q ss_pred HHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCC----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005108 479 LVARARARGNDLFKSERFTEACQAYGEGLRFDPSN----SVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRR 554 (714)
Q Consensus 479 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 554 (714)
....++..|+-.++.|+|.+|.++|.++|.++|++ +.+|.++|.+..++|+.++|+..++.++++++...+++...
T Consensus 248 ~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~r 327 (486)
T KOG0550|consen 248 KLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRR 327 (486)
T ss_pred HHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHH
Confidence 99999999999999999999999999999999986 68899999999999999999999999999999999999999
Q ss_pred HHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhccccccccc
Q 005108 555 AASNSKLEKWADAVRDFEVLRRELPDDNEIAESLFHAQVSLKKSRGEEVYNMK 607 (714)
Q Consensus 555 a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~L~~~~~~l~~~~~~~~~~~~ 607 (714)
|.|+..+++|++|+++|+++++...+ .++...|.+++..|++.+++++|++.
T Consensus 328 a~c~l~le~~e~AV~d~~~a~q~~~s-~e~r~~l~~A~~aLkkSkRkd~ykil 379 (486)
T KOG0550|consen 328 ANCHLALEKWEEAVEDYEKAMQLEKD-CEIRRTLREAQLALKKSKRKDWYKIL 379 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccc-cchHHHHHHHHHHHHHhhhhhHHHHh
Confidence 99999999999999999999999977 99999999999999999999999876
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.5e-25 Score=256.37 Aligned_cols=351 Identities=14% Similarity=0.056 Sum_probs=270.1
Q ss_pred ccchhhhhcCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Q 005108 227 NANVNRNRGGICGGDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLD 306 (714)
Q Consensus 227 ~~~~~~~~~~~~p~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 306 (714)
....+.....+.|+++..+..++.++...|++++|+..++++++.+|++.. +..+|.++...|++++|+..|+++++++
T Consensus 68 A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~ 146 (765)
T PRK10049 68 SLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA 146 (765)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 344455545578888888888888888889999999999999888888888 8888888888999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCCCCh------------------------HH----HHHHHHHHHHH---
Q 005108 307 PNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQADP------------------------TE----VHRLQVVEKHL--- 355 (714)
Q Consensus 307 p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~------------------------~~----~~~l~~~~~~~--- 355 (714)
|++..++..++.++...++.++|+..++++...++. .. ...+..++...
T Consensus 147 P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~ 226 (765)
T PRK10049 147 PQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALW 226 (765)
T ss_pred CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhc
Confidence 988888888888888888888888877765541110 00 00011111111
Q ss_pred ---------------HHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCC
Q 005108 356 ---------------SKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTV 420 (714)
Q Consensus 356 ---------------~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 420 (714)
.....+...+++++|+..|+++++.++.........++.+|..+|++++|+..|+++++.+|.+.
T Consensus 227 ~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~ 306 (765)
T PRK10049 227 HDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIA 306 (765)
T ss_pred ccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCC
Confidence 11123457789999999999999886543333344468899999999999999999988776641
Q ss_pred CchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhH---HHHHHHHHHHhHHhhCcCHH
Q 005108 421 SSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNV---KLVARARARGNDLFKSERFT 497 (714)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l---~~~~~~~~~g~~~~~~g~~~ 497 (714)
. ........++.++...|++++|+..++++....|.....+...... ........++.++...|+++
T Consensus 307 ~----------~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~ 376 (765)
T PRK10049 307 D----------LSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLP 376 (765)
T ss_pred C----------CChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHH
Confidence 0 0023456667788999999999999999998877432111000000 00001113488999999999
Q ss_pred HHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Q 005108 498 EACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRE 577 (714)
Q Consensus 498 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 577 (714)
+|++.|++++...|.+..++..+|.++...|++++|++.++++++++|++..+++.+|.++..+|++++|...++++++.
T Consensus 377 eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 377 QAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHH
Q 005108 578 LPDDNEIAESL 588 (714)
Q Consensus 578 ~p~~~~~~~~L 588 (714)
+|+++.+...-
T Consensus 457 ~Pd~~~~~~~~ 467 (765)
T PRK10049 457 EPQDPGVQRLA 467 (765)
T ss_pred CCCCHHHHHHH
Confidence 99999776543
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.3e-26 Score=237.59 Aligned_cols=308 Identities=18% Similarity=0.173 Sum_probs=247.7
Q ss_pred HHHHHHHHHHH--HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 005108 243 EELKRMGNELY--RKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLL 320 (714)
Q Consensus 243 ~~~~~~g~~~~--~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 320 (714)
+.+..+|..|. .+-+.++|+..|.+.-...++..+++..+|.+|+++++|++|..+|+.+-+++|-..+....+..++
T Consensus 318 ~llr~~~~~~~~~s~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~L 397 (638)
T KOG1126|consen 318 ELLRGLGEGYRSLSQYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTL 397 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHH
Confidence 44445555554 4456789999999977778888899999999999999999999999999999998888777777777
Q ss_pred HHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 005108 321 VRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLH 400 (714)
Q Consensus 321 ~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g 400 (714)
+.+.+. -++.++.+-+-..++.. -+.|...|.+|.-+++++.|++.|+++++++|.+. ..|..+|.-+....
T Consensus 398 WHLq~~-v~Ls~Laq~Li~~~~~s------PesWca~GNcfSLQkdh~~Aik~f~RAiQldp~fa-YayTLlGhE~~~~e 469 (638)
T KOG1126|consen 398 WHLQDE-VALSYLAQDLIDTDPNS------PESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFA-YAYTLLGHESIATE 469 (638)
T ss_pred HHHHhh-HHHHHHHHHHHhhCCCC------cHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccc-hhhhhcCChhhhhH
Confidence 776543 34444444332222221 13466677778888888888888888888888753 44555788888888
Q ss_pred CHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHH
Q 005108 401 QLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLV 480 (714)
Q Consensus 401 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~ 480 (714)
++|.|..+|++++..+|.+ ..+||.+|.+|.++++++.|.-.|++|++++|.+......+
T Consensus 470 e~d~a~~~fr~Al~~~~rh--------------YnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~------ 529 (638)
T KOG1126|consen 470 EFDKAMKSFRKALGVDPRH--------------YNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHI------ 529 (638)
T ss_pred HHHhHHHHHHhhhcCCchh--------------hHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhh------
Confidence 8888888888888888888 77888888888888888888888888888888888777765
Q ss_pred HHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005108 481 ARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSK 560 (714)
Q Consensus 481 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 560 (714)
|.++.+.|+.++|+.+|++|+.++|.++...+..|.+++.++++++|+..+++.-++-|++..+++.+|.+|.+
T Consensus 530 ------g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~ 603 (638)
T KOG1126|consen 530 ------GRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKR 603 (638)
T ss_pred ------hHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred hccHHHHHHHHHHHHHhCCCCHHH
Q 005108 561 LEKWADAVRDFEVLRRELPDDNEI 584 (714)
Q Consensus 561 ~g~~~eA~~~~~~al~~~p~~~~~ 584 (714)
+|+.+.|+..|--|.+++|.-..+
T Consensus 604 ~~~~~~Al~~f~~A~~ldpkg~~i 627 (638)
T KOG1126|consen 604 LGNTDLALLHFSWALDLDPKGAQI 627 (638)
T ss_pred HccchHHHHhhHHHhcCCCccchh
Confidence 888888888888888888876553
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.6e-24 Score=233.76 Aligned_cols=283 Identities=17% Similarity=0.144 Sum_probs=185.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc----HHHHHHHH
Q 005108 242 AEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNY----WRAHQRLG 317 (714)
Q Consensus 242 ~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~a~~~la 317 (714)
....+.+|..+...|++++|+..|+++++.+|++..++..+|.++...|++++|+..+++++...+.. ..++..+|
T Consensus 35 ~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La 114 (389)
T PRK11788 35 LSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELG 114 (389)
T ss_pred ccHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 34555567777777777777777777777777777777777777777777777777777776643221 24556666
Q ss_pred HHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 005108 318 SLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALL 397 (714)
Q Consensus 318 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~ 397 (714)
.+|...|++++|+..|++++ +..|. ....+..++.++.
T Consensus 115 ~~~~~~g~~~~A~~~~~~~l-----------------------------------------~~~~~-~~~~~~~la~~~~ 152 (389)
T PRK11788 115 QDYLKAGLLDRAEELFLQLV-----------------------------------------DEGDF-AEGALQQLLEIYQ 152 (389)
T ss_pred HHHHHCCCHHHHHHHHHHHH-----------------------------------------cCCcc-hHHHHHHHHHHHH
Confidence 66666666666666665554 33332 2334445666666
Q ss_pred HcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhH
Q 005108 398 KLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNV 477 (714)
Q Consensus 398 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l 477 (714)
..|++++|++.++++++..|.+.. ......+..+|.++...|++++|+.+|+++++.+|++...+..+
T Consensus 153 ~~g~~~~A~~~~~~~~~~~~~~~~---------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l--- 220 (389)
T PRK11788 153 QEKDWQKAIDVAERLEKLGGDSLR---------VEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILL--- 220 (389)
T ss_pred HhchHHHHHHHHHHHHHhcCCcch---------HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHH---
Confidence 677777777777766666554310 00123455666777777777777777777777777666665544
Q ss_pred HHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 005108 478 KLVARARARGNDLFKSERFTEACQAYGEGLRFDPSN-SVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAA 556 (714)
Q Consensus 478 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 556 (714)
|.++.+.|++++|+++|+++++.+|.+ ..++..++.+|.+.|++++|+..++++++..|+.. .+..++.
T Consensus 221 ---------a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~-~~~~la~ 290 (389)
T PRK11788 221 ---------GDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGAD-LLLALAQ 290 (389)
T ss_pred ---------HHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCch-HHHHHHH
Confidence 667777777777777777777766654 34566677777777777777777777777777654 3366777
Q ss_pred HHHHhccHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005108 557 SNSKLEKWADAVRDFEVLRRELPDDNEIAESL 588 (714)
Q Consensus 557 ~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~L 588 (714)
++.+.|++++|+..|+++++.+|++..+...+
T Consensus 291 ~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~ 322 (389)
T PRK11788 291 LLEEQEGPEAAQALLREQLRRHPSLRGFHRLL 322 (389)
T ss_pred HHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 77777777777777777777777666544333
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.7e-24 Score=246.28 Aligned_cols=345 Identities=14% Similarity=0.048 Sum_probs=274.0
Q ss_pred chhhhhcCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Q 005108 229 NVNRNRGGICGGDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPN 308 (714)
Q Consensus 229 ~~~~~~~~~~p~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 308 (714)
.++.....+.|..+..+..+|..+...|++++|+.+|+++++.+|.++.++..++.++...|++++|+..++++++.+|+
T Consensus 36 ~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~ 115 (765)
T PRK10049 36 TVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPD 115 (765)
T ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 44555545688889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC--CCChHHHHHHHHHHH-----------------------------HHHH
Q 005108 309 YWRAHQRLGSLLVRLGQVENARRHLCLSGQ--QADPTEVHRLQVVEK-----------------------------HLSK 357 (714)
Q Consensus 309 ~~~a~~~la~~~~~~g~~~~A~~~~~~al~--~~~~~~~~~l~~~~~-----------------------------~~~~ 357 (714)
+.. +..+|.++...|++++|+..|++++. +.++.....+..+.. ....
T Consensus 116 ~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~ 194 (765)
T PRK10049 116 KAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAEL 194 (765)
T ss_pred CHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 999 99999999999999999999999998 222222222111100 0000
Q ss_pred hHHHH-----HcCCH---HHHHHHHHHHHHc---CCCCCHHH---HHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCch
Q 005108 358 CTDAR-----KVGDW---KSALREGDAAIAA---GADFSPQL---SMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSS 423 (714)
Q Consensus 358 a~~~~-----~~g~~---~~Al~~~~~al~~---~p~~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 423 (714)
...+. ..+++ ++|++.++++++. +|+....+ ......++...|++++|+..|+++++..+..+
T Consensus 195 ~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P--- 271 (765)
T PRK10049 195 VRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIP--- 271 (765)
T ss_pred HHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCC---
Confidence 00010 11223 6788888888865 33322221 11112345677999999999999998865421
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCH----HHHHHHHhHHHHHHHHHHHhHHhhCcCHHHH
Q 005108 424 QTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNV----EVAVLLNNVKLVARARARGNDLFKSERFTEA 499 (714)
Q Consensus 424 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A 499 (714)
.++...++.+|..+|++++|+.+|+++++.+|.+. ..... ++.++...|++++|
T Consensus 272 ----------~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~------------L~~a~~~~g~~~eA 329 (765)
T PRK10049 272 ----------PWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELAD------------LFYSLLESENYPGA 329 (765)
T ss_pred ----------HHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHH------------HHHHHHhcccHHHH
Confidence 23444469999999999999999999998887662 22322 36778999999999
Q ss_pred HHHHHHhhccCCC-------------C--HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccH
Q 005108 500 CQAYGEGLRFDPS-------------N--SVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKW 564 (714)
Q Consensus 500 ~~~~~~al~~~p~-------------~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 564 (714)
+.+++++.+..|. + ..++..++.++...|++++|++.+++++...|++..+++.+|.++...|++
T Consensus 330 ~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~ 409 (765)
T PRK10049 330 LTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWP 409 (765)
T ss_pred HHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCH
Confidence 9999999988763 2 457788999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhc
Q 005108 565 ADAVRDFEVLRRELPDDNEIAESLFHAQVSLKKSR 599 (714)
Q Consensus 565 ~eA~~~~~~al~~~p~~~~~~~~L~~~~~~l~~~~ 599 (714)
++|++.++++++++|++..+...+..+...+++..
T Consensus 410 ~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~ 444 (765)
T PRK10049 410 RAAENELKKAEVLEPRNINLEVEQAWTALDLQEWR 444 (765)
T ss_pred HHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHH
Confidence 99999999999999999998887777666655543
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.7e-24 Score=230.14 Aligned_cols=285 Identities=13% Similarity=0.001 Sum_probs=234.0
Q ss_pred cchhhhhcCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 005108 228 ANVNRNRGGICGGDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRN----AAFRSNRAAALTGLGRIGEAVKECEEAV 303 (714)
Q Consensus 228 ~~~~~~~~~~~p~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al 303 (714)
...+......+|+++..+..+|..+...|++++|+..+++++...+.. ..++..+|.+|...|++++|+..|++++
T Consensus 55 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l 134 (389)
T PRK11788 55 IDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLV 134 (389)
T ss_pred HHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 334444456789999999999999999999999999999999854332 3578899999999999999999999999
Q ss_pred hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCC
Q 005108 304 RLDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGAD 383 (714)
Q Consensus 304 ~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~ 383 (714)
+.+|.+..++..++.++...|++++|++.|++++.........
T Consensus 135 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~------------------------------------- 177 (389)
T PRK11788 135 DEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRV------------------------------------- 177 (389)
T ss_pred cCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchH-------------------------------------
Confidence 9999999999999999999999999999887765311110000
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhcc
Q 005108 384 FSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQI 463 (714)
Q Consensus 384 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 463 (714)
....++..++.++...|++++|+.+|+++++.+|.+ ..+++.+|.++...|++++|++.|++++..
T Consensus 178 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~--------------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 243 (389)
T PRK11788 178 EIAHFYCELAQQALARGDLDAARALLKKALAADPQC--------------VRASILLGDLALAQGDYAAAIEALERVEEQ 243 (389)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCC--------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 012234568889999999999999999999998887 678889999999999999999999999998
Q ss_pred CCCCH-HHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 005108 464 DPRNV-EVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALL 542 (714)
Q Consensus 464 ~p~~~-~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 542 (714)
+|.+. ..+.. ++.+|...|++++|+..++++++..|+... +..++.++.+.|++++|+..++++++
T Consensus 244 ~p~~~~~~~~~------------l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~-~~~la~~~~~~g~~~~A~~~l~~~l~ 310 (389)
T PRK11788 244 DPEYLSEVLPK------------LMECYQALGDEAEGLEFLRRALEEYPGADL-LLALAQLLEEQEGPEAAQALLREQLR 310 (389)
T ss_pred ChhhHHHHHHH------------HHHHHHHcCCHHHHHHHHHHHHHhCCCchH-HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 88763 23333 388899999999999999999999997754 48899999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHH--hccHHHHHHHHHHHHH
Q 005108 543 IQPNYTKALLRRAASNSK--LEKWADAVRDFEVLRR 576 (714)
Q Consensus 543 ~~p~~~~~~~~la~~~~~--~g~~~eA~~~~~~al~ 576 (714)
..|++......++..+.. .|+.++|+..+++.++
T Consensus 311 ~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 311 RHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred hCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHH
Confidence 999987555444433322 4588899988887764
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-23 Score=243.22 Aligned_cols=330 Identities=13% Similarity=0.047 Sum_probs=275.1
Q ss_pred ccccchhhhhcCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCCC----------
Q 005108 225 PENANVNRNRGGICGGDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRN---AAFRSNRAAALTGLGR---------- 291 (714)
Q Consensus 225 p~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~---~~~~~~la~~~~~~g~---------- 291 (714)
++....+..+-...|.+.+.+...+....+.|++++|...|+++....++- ......++.+|...+.
T Consensus 359 ~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l 438 (987)
T PRK09782 359 AEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAIL 438 (987)
T ss_pred hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHh
Confidence 344445555555678999999999999999999999999999999863322 2344477777776644
Q ss_pred ---------------H---HHHHHHHHHHHhcCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHH
Q 005108 292 ---------------I---GEAVKECEEAVRLDPN--YWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVV 351 (714)
Q Consensus 292 ---------------~---~~A~~~~~~al~~~p~--~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~ 351 (714)
+ ..+...+.+++..+|. +..+|+.+|.++.. +++++|+..|.+++..... ..
T Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd-~~------ 510 (987)
T PRK09782 439 SKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPD-AW------ 510 (987)
T ss_pred ccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCc-hH------
Confidence 2 2344555666667788 99999999999987 8999999999888863322 11
Q ss_pred HHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhh
Q 005108 352 EKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGML 431 (714)
Q Consensus 352 ~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 431 (714)
.++..+..+...|++++|+..|++++...|. .. .+..+|.++.+.|++++|+.+|+++++.+|..
T Consensus 511 -~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~-~~-a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~------------ 575 (987)
T PRK09782 511 -QHRAVAYQAYQVEDYATALAAWQKISLHDMS-NE-DLLAAANTAQAAGNGAARDRWLQQAEQRGLGD------------ 575 (987)
T ss_pred -HHHHHHHHHHHCCCHHHHHHHHHHHhccCCC-cH-HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcc------------
Confidence 2555666678999999999999998777555 33 35568999999999999999999999999887
Q ss_pred hhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCC
Q 005108 432 SEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDP 511 (714)
Q Consensus 432 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p 511 (714)
...+..++..+...|++++|+..|+++++++|+ ...+..+ |.++.+.|++++|+.+|+++++++|
T Consensus 576 --~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~L------------A~~l~~lG~~deA~~~l~~AL~l~P 640 (987)
T PRK09782 576 --NALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVAR------------ATIYRQRHNVPAAVSDLRAALELEP 640 (987)
T ss_pred --HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHH------------HHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 455556666667779999999999999999996 7777655 9999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005108 512 SNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAESLFHA 591 (714)
Q Consensus 512 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~L~~~ 591 (714)
+++.++.++|.++...|++++|+..|+++++++|+++.+++++|.++..+|++++|+.+|+++++++|++..+.....++
T Consensus 641 d~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~ 720 (987)
T PRK09782 641 NNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQ 720 (987)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998877655544
Q ss_pred H
Q 005108 592 Q 592 (714)
Q Consensus 592 ~ 592 (714)
.
T Consensus 721 ~ 721 (987)
T PRK09782 721 N 721 (987)
T ss_pred H
Confidence 3
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.8e-23 Score=207.52 Aligned_cols=331 Identities=16% Similarity=0.129 Sum_probs=212.7
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-----------------------------HHH
Q 005108 238 CGGDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAA-----------------------------LTG 288 (714)
Q Consensus 238 ~p~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~-----------------------------~~~ 288 (714)
...|+..++..|.++.+.|....|+..|..++...|-+..+|..|+.+ +..
T Consensus 160 ~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~e 239 (559)
T KOG1155|consen 160 GEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQE 239 (559)
T ss_pred ccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHH
Confidence 345789999999999999999999999999999888887777655544 444
Q ss_pred CCCHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCH
Q 005108 289 LGRIGEAVKECEEAVRL-DPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDW 367 (714)
Q Consensus 289 ~g~~~~A~~~~~~al~~-~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~ 367 (714)
+.+.++++.-++..+.. -|.+...-...|.+.+.+.++++|+..|+...+. +|-....+...... ++-..+
T Consensus 240 l~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~kn-DPYRl~dmdlySN~------LYv~~~- 311 (559)
T KOG1155|consen 240 LHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKN-DPYRLDDMDLYSNV------LYVKND- 311 (559)
T ss_pred HHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhc-CCCcchhHHHHhHH------HHHHhh-
Confidence 55678888888888777 6888888888999999999999999999999875 44333322221111 111111
Q ss_pred HHHHHHH-HHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHH
Q 005108 368 KSALREG-DAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMA 446 (714)
Q Consensus 368 ~~Al~~~-~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 446 (714)
...+.++ +.+..++ .+.++....+|+.|...++.++|+.+|+++++++|.. ..+|..+|.-|..
T Consensus 312 ~skLs~LA~~v~~id-KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~--------------~~aWTLmGHEyvE 376 (559)
T KOG1155|consen 312 KSKLSYLAQNVSNID-KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKY--------------LSAWTLMGHEYVE 376 (559)
T ss_pred hHHHHHHHHHHHHhc-cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcch--------------hHHHHHhhHHHHH
Confidence 1111111 1122222 2233344446666666666666666666666666665 5566666666666
Q ss_pred hCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHH
Q 005108 447 LGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFK 526 (714)
Q Consensus 447 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 526 (714)
+++...|++.|++|++++|.+..+|+.+ |+.|.-++...=|+-+|++|++..|+|...|..||.||.+
T Consensus 377 mKNt~AAi~sYRrAvdi~p~DyRAWYGL------------GQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~k 444 (559)
T KOG1155|consen 377 MKNTHAAIESYRRAVDINPRDYRAWYGL------------GQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEK 444 (559)
T ss_pred hcccHHHHHHHHHHHhcCchhHHHHhhh------------hHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Confidence 6666666666666666666666666655 6666666666666666666666666666666666666666
Q ss_pred hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH-------hCCCCHHHHHHHHHHHHHhhhhc
Q 005108 527 LGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRR-------ELPDDNEIAESLFHAQVSLKKSR 599 (714)
Q Consensus 527 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~-------~~p~~~~~~~~L~~~~~~l~~~~ 599 (714)
+++.++|+++|.+++.....+..+++.+|.+|.++++.++|..+|++.++ ..|+-..+...|..-....++.+
T Consensus 445 l~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~ 524 (559)
T KOG1155|consen 445 LNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFD 524 (559)
T ss_pred hccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchH
Confidence 66666666666666666555556666666666666666666666666665 22323333444444444444444
Q ss_pred cccc
Q 005108 600 GEEV 603 (714)
Q Consensus 600 ~~~~ 603 (714)
+..+
T Consensus 525 ~As~ 528 (559)
T KOG1155|consen 525 EASY 528 (559)
T ss_pred HHHH
Confidence 4444
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-24 Score=227.47 Aligned_cols=287 Identities=18% Similarity=0.237 Sum_probs=243.7
Q ss_pred HHHHHHHHHHHC--CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHH
Q 005108 278 FRSNRAAALTGL--GRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHL 355 (714)
Q Consensus 278 ~~~~la~~~~~~--g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~ 355 (714)
.+..+|..|... -+.++|+..|++.-...++...++..+|..|+.+++|++|.++|+.+-+. +|.....++....
T Consensus 319 llr~~~~~~~~~s~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~-~p~rv~~meiyST-- 395 (638)
T KOG1126|consen 319 LLRGLGEGYRSLSQYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRI-EPYRVKGMEIYST-- 395 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccccccchhHHHH--
Confidence 344555555444 45689999999977777888899999999999999999999999887642 1111111111110
Q ss_pred HHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHH
Q 005108 356 SKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAY 435 (714)
Q Consensus 356 ~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~ 435 (714)
.+..+.+--+--...+..+..+|. .++.|..+|+||.-+++++.|+++|+++++++|.. ++
T Consensus 396 ----~LWHLq~~v~Ls~Laq~Li~~~~~-sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~f--------------aY 456 (638)
T KOG1126|consen 396 ----TLWHLQDEVALSYLAQDLIDTDPN-SPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRF--------------AY 456 (638)
T ss_pred ----HHHHHHhhHHHHHHHHHHHhhCCC-CcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCcc--------------ch
Confidence 011112211112233556667776 67788889999999999999999999999999998 99
Q ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHH
Q 005108 436 TFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSV 515 (714)
Q Consensus 436 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~ 515 (714)
+|..+|.-+.....+|+|..+|++|+..+|.+..+|+.+ |.+|.++++++.|.-+|++|++++|.+..
T Consensus 457 ayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGl------------G~vy~Kqek~e~Ae~~fqkA~~INP~nsv 524 (638)
T KOG1126|consen 457 AYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGL------------GTVYLKQEKLEFAEFHFQKAVEINPSNSV 524 (638)
T ss_pred hhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhh------------hhheeccchhhHHHHHHHhhhcCCccchh
Confidence 999999999999999999999999999999999999987 99999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 005108 516 LYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAESLFHAQVSL 595 (714)
Q Consensus 516 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~L~~~~~~l 595 (714)
+.+.+|.++.++|+.++|+..|++|+.++|.++-..+..|.++..++++++|+..++++.++-|++..+...+.+++..+
T Consensus 525 i~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~ 604 (638)
T KOG1126|consen 525 ILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRL 604 (638)
T ss_pred HHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred hhh
Q 005108 596 KKS 598 (714)
Q Consensus 596 ~~~ 598 (714)
++.
T Consensus 605 ~~~ 607 (638)
T KOG1126|consen 605 GNT 607 (638)
T ss_pred ccc
Confidence 764
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.8e-24 Score=213.50 Aligned_cols=330 Identities=15% Similarity=0.158 Sum_probs=270.3
Q ss_pred ccchhhhhcCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH------
Q 005108 227 NANVNRNRGGICGGDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECE------ 300 (714)
Q Consensus 227 ~~~~~~~~~~~~p~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~------ 300 (714)
.+.-|.....++|+.+..|-+++-+|...|+|++.++.+.++++++|+...+++.++.++..+|++++|+....
T Consensus 134 AIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~~~eal~D~tv~ci~~ 213 (606)
T KOG0547|consen 134 AIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQLGKFDEALFDVTVLCILE 213 (606)
T ss_pred HHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccHHHHHHhhhHHHHhh
Confidence 33444444568999899999999999999999999999999999999999999999999999999998865331
Q ss_pred ------------HHHhc------------C--C-----------------------------------------------
Q 005108 301 ------------EAVRL------------D--P----------------------------------------------- 307 (714)
Q Consensus 301 ------------~al~~------------~--p----------------------------------------------- 307 (714)
+.++. + |
T Consensus 214 ~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e 293 (606)
T KOG0547|consen 214 GFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDAALAEALEALEKGLEE 293 (606)
T ss_pred hcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccchhhHHHHHHHHHhhCch
Confidence 11100 0 0
Q ss_pred ---------------------Cc---------HHHHHHHHHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHH
Q 005108 308 ---------------------NY---------WRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSK 357 (714)
Q Consensus 308 ---------------------~~---------~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~ 357 (714)
.+ ..++...|..++-.|++..|...|++++....... ..++.+
T Consensus 294 ~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~-------~lyI~~ 366 (606)
T KOG0547|consen 294 GYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFN-------SLYIKR 366 (606)
T ss_pred hHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccc-------hHHHHH
Confidence 00 22333344444455555556555555554221111 226778
Q ss_pred hHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHH
Q 005108 358 CTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTF 437 (714)
Q Consensus 358 a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~ 437 (714)
+..|....+-++-...|+++..++|.+. .+|+.+|.+++-++++++|+..|++++.++|.+ ++.+
T Consensus 367 a~~y~d~~~~~~~~~~F~~A~~ldp~n~-dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~--------------~~~~ 431 (606)
T KOG0547|consen 367 AAAYADENQSEKMWKDFNKAEDLDPENP-DVYYHRGQMRFLLQQYEEAIADFQKAISLDPEN--------------AYAY 431 (606)
T ss_pred HHHHhhhhccHHHHHHHHHHHhcCCCCC-chhHhHHHHHHHHHHHHHHHHHHHHHhhcChhh--------------hHHH
Confidence 8889999999999999999999999865 455569999999999999999999999999999 9999
Q ss_pred HHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCC-----
Q 005108 438 FVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPS----- 512 (714)
Q Consensus 438 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~----- 512 (714)
..++.++++++++++++..|+.+++..|+.++++... |.++..+++|++|++.|++++++.|.
T Consensus 432 iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~f------------AeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~ 499 (606)
T KOG0547|consen 432 IQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLF------------AEILTDQQQFDKAVKQYDKAIELEPREHLII 499 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHH------------HHHHhhHHhHHHHHHHHHHHHhhcccccccc
Confidence 9999999999999999999999999999999999888 99999999999999999999999998
Q ss_pred -CHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 005108 513 -NSVLYCNRAACWF-KLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAESLFH 590 (714)
Q Consensus 513 -~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~L~~ 590 (714)
++..+.+.|.+.. -.+++.+|+.++++|++++|....++..||.+..++|+.++|+++|+++..+.....+.......
T Consensus 500 v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lArt~~E~~~a~s~ 579 (606)
T KOG0547|consen 500 VNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLARTESEMVHAYSL 579 (606)
T ss_pred ccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 5555555554433 25899999999999999999999999999999999999999999999999887666665544433
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.5e-23 Score=226.72 Aligned_cols=347 Identities=19% Similarity=0.180 Sum_probs=204.3
Q ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc-HHH
Q 005108 237 ICGGDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRN---AAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNY-WRA 312 (714)
Q Consensus 237 ~~p~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~a 312 (714)
.++.+|.++..++..++..|+|..+..+..-++...-.. .+.++.+|.+|..+|+|++|..+|.++++.++++ .-.
T Consensus 265 ~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~ 344 (1018)
T KOG2002|consen 265 ENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLP 344 (1018)
T ss_pred hcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCcccc
Confidence 455566666666666666666666666666665543222 3446666666666666666666666666666555 555
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhhcC--CCChHHHHHHHH-----------------------------HHHHH------
Q 005108 313 HQRLGSLLVRLGQVENARRHLCLSGQ--QADPTEVHRLQV-----------------------------VEKHL------ 355 (714)
Q Consensus 313 ~~~la~~~~~~g~~~~A~~~~~~al~--~~~~~~~~~l~~-----------------------------~~~~~------ 355 (714)
++.+|.+|+..|+++.|+.+|++.+. +........+.. .+.|+
T Consensus 345 ~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~ 424 (1018)
T KOG2002|consen 345 LVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLL 424 (1018)
T ss_pred ccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 56666666666666666666665544 111111111111 11222
Q ss_pred --------------------------------HHhHHHHHcCCHHHHHHHHHHHHHc-----CCCC----CHHHHHHHHH
Q 005108 356 --------------------------------SKCTDARKVGDWKSALREGDAAIAA-----GADF----SPQLSMCRVE 394 (714)
Q Consensus 356 --------------------------------~~a~~~~~~g~~~~Al~~~~~al~~-----~p~~----~~~~~~~la~ 394 (714)
+.|..++..|++.+|...|..++.. +++. ...+.+++|.
T Consensus 425 e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlar 504 (1018)
T KOG2002|consen 425 EQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLAR 504 (1018)
T ss_pred HhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHH
Confidence 2344445555555665555555544 1111 1113445566
Q ss_pred HHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHH
Q 005108 395 ALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLL 474 (714)
Q Consensus 395 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 474 (714)
++..+++++.|.+.|..+++.+|.. ..++..+|......++..+|...++.++..+..++++|.++
T Consensus 505 l~E~l~~~~~A~e~Yk~Ilkehp~Y--------------Id~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~ 570 (1018)
T KOG2002|consen 505 LLEELHDTEVAEEMYKSILKEHPGY--------------IDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLL 570 (1018)
T ss_pred HHHhhhhhhHHHHHHHHHHHHCchh--------------HHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHH
Confidence 6666666666666666666666655 55677777666677888888888888888888888888877
Q ss_pred HhHHHHH------------------------HHHHHHhHHh------------hCcCHHHHHHHHHHhhccCCCCHHHHH
Q 005108 475 NNVKLVA------------------------RARARGNDLF------------KSERFTEACQAYGEGLRFDPSNSVLYC 518 (714)
Q Consensus 475 ~~l~~~~------------------------~~~~~g~~~~------------~~g~~~~A~~~~~~al~~~p~~~~~~~ 518 (714)
.++.... ....+|++++ ..+.+++|++.|.++|+.+|.|..+-+
T Consensus 571 G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAAN 650 (1018)
T KOG2002|consen 571 GNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAAN 650 (1018)
T ss_pred HHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhcc
Confidence 7542211 1235566654 345678899999999999998866666
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhh
Q 005108 519 NRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELP--DDNEIAESLFHAQVSLK 596 (714)
Q Consensus 519 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p--~~~~~~~~L~~~~~~l~ 596 (714)
.+|.++...|++.+|+.+|.++.+--.++..+|.++|.||..+|+|-.|++.|+.+++..- ++.++...|.++.....
T Consensus 651 GIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~ 730 (1018)
T KOG2002|consen 651 GIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAG 730 (1018)
T ss_pred chhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhh
Confidence 6666666666666666666666655545555666666666666666666666666655332 34555555555544443
Q ss_pred h
Q 005108 597 K 597 (714)
Q Consensus 597 ~ 597 (714)
+
T Consensus 731 ~ 731 (1018)
T KOG2002|consen 731 K 731 (1018)
T ss_pred h
Confidence 3
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.5e-23 Score=223.85 Aligned_cols=353 Identities=17% Similarity=0.116 Sum_probs=293.6
Q ss_pred cCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHH
Q 005108 235 GGICGGDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRN-AAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAH 313 (714)
Q Consensus 235 ~~~~p~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 313 (714)
..-.|+|.-.++..|.+.+..++|..|+.+|++++..+|.. +.....+|.|+.++++.+.|+..|+++++++|.++.++
T Consensus 157 l~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~al 236 (1018)
T KOG2002|consen 157 LKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSAL 236 (1018)
T ss_pred HhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHH
Confidence 45689999999999999999999999999999999999865 56778889999999999999999999999998877777
Q ss_pred HHHHHHHHHcCC---HHHHHHHHHhhcC--CCChHHHHH----------------------------HHHHHHHHHHhHH
Q 005108 314 QRLGSLLVRLGQ---VENARRHLCLSGQ--QADPTEVHR----------------------------LQVVEKHLSKCTD 360 (714)
Q Consensus 314 ~~la~~~~~~g~---~~~A~~~~~~al~--~~~~~~~~~----------------------------l~~~~~~~~~a~~ 360 (714)
..||.+-....+ +..++..+.++.. ..+|..... ....+.++.+|..
T Consensus 237 v~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs 316 (1018)
T KOG2002|consen 237 VALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRS 316 (1018)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 776665544332 3444444444433 222222211 2344568889999
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHH
Q 005108 361 ARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVR 440 (714)
Q Consensus 361 ~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~l 440 (714)
|...|++++|..+|.++++.++++..-.++.+|.+|+..|+++.|+.+|+++++..|++ ..+...+
T Consensus 317 ~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~--------------~etm~iL 382 (1018)
T KOG2002|consen 317 YHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNN--------------YETMKIL 382 (1018)
T ss_pred HHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcch--------------HHHHHHH
Confidence 99999999999999999999998755556679999999999999999999999999998 7788889
Q ss_pred HHHHHHhC----cHHHHHHHHHHHhccCCCCHHHHHHHHhHHH--------------------------HHHHHHHHhHH
Q 005108 441 AQIEMALG----RFENAVTAAEKAGQIDPRNVEVAVLLNNVKL--------------------------VARARARGNDL 490 (714)
Q Consensus 441 a~~~~~~g----~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~--------------------------~~~~~~~g~~~ 490 (714)
|.+|...+ ..++|..++.++++..|.+.++|..+..+.. .+.+.+.|..+
T Consensus 383 G~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslh 462 (1018)
T KOG2002|consen 383 GCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLH 462 (1018)
T ss_pred HhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHH
Confidence 99998875 6789999999999999999999988766421 12246789999
Q ss_pred hhCcCHHHHHHHHHHhhcc-----CCC-----CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005108 491 FKSERFTEACQAYGEGLRF-----DPS-----NSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSK 560 (714)
Q Consensus 491 ~~~g~~~~A~~~~~~al~~-----~p~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 560 (714)
+..|++++|...|.+++.. +++ +....|++|.++..+++++.|.+.|..+++..|.+.+++.++|.....
T Consensus 463 f~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~ 542 (1018)
T KOG2002|consen 463 FRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARD 542 (1018)
T ss_pred HHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHh
Confidence 9999999999999999876 221 133689999999999999999999999999999999999999988888
Q ss_pred hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhccc
Q 005108 561 LEKWADAVRDFEVLRRELPDDNEIAESLFHAQVSLKKSRGE 601 (714)
Q Consensus 561 ~g~~~eA~~~~~~al~~~p~~~~~~~~L~~~~~~l~~~~~~ 601 (714)
.+...+|...+..+++.+..+++++..++..+....+++..
T Consensus 543 k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a 583 (1018)
T KOG2002|consen 543 KNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPA 583 (1018)
T ss_pred ccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhccc
Confidence 89999999999999999999999999999877766665543
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.9e-23 Score=236.24 Aligned_cols=294 Identities=16% Similarity=0.065 Sum_probs=253.8
Q ss_pred HHHHHHHHHHHhCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhhc
Q 005108 260 EALSMYDKAISLAPR--NAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVRLGQVENARRHLCLSG 337 (714)
Q Consensus 260 ~Al~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al 337 (714)
.+...+.+++..+|. ++.+|+.+|.|+.. +++++|+..|.+++...|++. .+..+|.++...|++++|+..|++++
T Consensus 459 ~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~-~~L~lA~al~~~Gr~eeAi~~~rka~ 536 (987)
T PRK09782 459 DNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAW-QHRAVAYQAYQVEDYATALAAWQKIS 536 (987)
T ss_pred hhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchH-HHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 345555666666777 89999999999998 899999999999999999754 46677888889999999999999887
Q ss_pred CCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCC
Q 005108 338 QQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEP 417 (714)
Q Consensus 338 ~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 417 (714)
....... .++..+..+...|++++|+.+|+++++.+|+.. ..+..++......|++++|+..|+++++++|
T Consensus 537 ~~~p~~~--------a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~-~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P 607 (987)
T PRK09782 537 LHDMSNE--------DLLAAANTAQAAGNGAARDRWLQQAEQRGLGDN-ALYWWLHAQRYIPGQPELALNDLTRSLNIAP 607 (987)
T ss_pred ccCCCcH--------HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHhCC
Confidence 6322221 245556778899999999999999999988753 4444466666677999999999999999999
Q ss_pred CCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHH
Q 005108 418 STVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFT 497 (714)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~ 497 (714)
+ ...+..+|.++.+.|++++|+..|++++.++|++..++..+ |.++...|+++
T Consensus 608 ~---------------~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nL------------G~aL~~~G~~e 660 (987)
T PRK09782 608 S---------------ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAAL------------GYALWDSGDIA 660 (987)
T ss_pred C---------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH------------HHHHHHCCCHH
Confidence 5 55789999999999999999999999999999999988866 99999999999
Q ss_pred HHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Q 005108 498 EACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRE 577 (714)
Q Consensus 498 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 577 (714)
+|+..|+++++++|+++.+++++|.++..+|++++|+..|+++++++|++..+....|.+.....+++.|.+.|+++..+
T Consensus 661 eAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~ 740 (987)
T PRK09782 661 QSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTF 740 (987)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHH
Q 005108 578 LPDDNEIAESLFHAQ 592 (714)
Q Consensus 578 ~p~~~~~~~~L~~~~ 592 (714)
+|... +......+.
T Consensus 741 ~~~~~-a~~~~g~~~ 754 (987)
T PRK09782 741 SFDSS-IGLRSGAMS 754 (987)
T ss_pred Cccch-hccccchHh
Confidence 98876 444444433
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.5e-22 Score=193.49 Aligned_cols=269 Identities=14% Similarity=0.070 Sum_probs=199.2
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCC----------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 005108 250 NELYRKGCFGEALSMYDKAISLAP----------RNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSL 319 (714)
Q Consensus 250 ~~~~~~g~~~~Al~~~~~al~~~p----------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~ 319 (714)
.+++...|.+.|-..+...++.+- .+.+.-..+|.||+++|.+.+|.+.++..++..|. ++.+..|+.+
T Consensus 187 y~fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~~-~dTfllLskv 265 (478)
T KOG1129|consen 187 YLFYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPH-PDTFLLLSKV 265 (478)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCCc-hhHHHHHHHH
Confidence 356778889999888777766532 12444566899999999999999999999988764 7889999999
Q ss_pred HHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 005108 320 LVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKL 399 (714)
Q Consensus 320 ~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~ 399 (714)
|.+..+...|+..|.+.++. .|. ...+....++++..+
T Consensus 266 Y~ridQP~~AL~~~~~gld~-----------------------------------------fP~-~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 266 YQRIDQPERALLVIGEGLDS-----------------------------------------FPF-DVTYLLGQARIHEAM 303 (478)
T ss_pred HHHhccHHHHHHHHhhhhhc-----------------------------------------CCc-hhhhhhhhHHHHHHH
Confidence 99999998888887665542 232 233344467777777
Q ss_pred CCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHH
Q 005108 400 HQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKL 479 (714)
Q Consensus 400 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~ 479 (714)
+++++|+++|+.+++.+|.+ ..+...+|.-|+..++.+-|+.+|++.+++.-.+++.+..+
T Consensus 304 ~~~~~a~~lYk~vlk~~~~n--------------vEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~Ni----- 364 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPIN--------------VEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNI----- 364 (478)
T ss_pred HhHHHHHHHHHHHHhcCCcc--------------ceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhH-----
Confidence 77777777777777777777 44555566667777777777777777777777777776655
Q ss_pred HHHHHHHHhHHhhCcCHHHHHHHHHHhhccCC--C-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 005108 480 VARARARGNDLFKSERFTEACQAYGEGLRFDP--S-NSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAA 556 (714)
Q Consensus 480 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p--~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 556 (714)
|.+++..++++-++..|++++.... + -.++|+++|.+....|++.-|..+|+-++..++++.+++.+||.
T Consensus 365 -------gLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLav 437 (478)
T KOG1129|consen 365 -------GLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAV 437 (478)
T ss_pred -------HHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHH
Confidence 7777777777777777777776532 2 25777888877777888888888888887777887888888888
Q ss_pred HHHHhccHHHHHHHHHHHHHhCCCCHHHHHH
Q 005108 557 SNSKLEKWADAVRDFEVLRRELPDDNEIAES 587 (714)
Q Consensus 557 ~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~ 587 (714)
+-.+.|+.++|..+++.+-...|+-.+...+
T Consensus 438 L~~r~G~i~~Arsll~~A~s~~P~m~E~~~N 468 (478)
T KOG1129|consen 438 LAARSGDILGARSLLNAAKSVMPDMAEVTTN 468 (478)
T ss_pred HHhhcCchHHHHHHHHHhhhhCccccccccc
Confidence 7778888888888887777777765554433
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-21 Score=226.44 Aligned_cols=411 Identities=13% Similarity=0.036 Sum_probs=315.2
Q ss_pred chhhhhcCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----------------------------------
Q 005108 229 NVNRNRGGICGGDAEELKRMGNELYRKGCFGEALSMYDKAISLAPR---------------------------------- 274 (714)
Q Consensus 229 ~~~~~~~~~~p~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~---------------------------------- 274 (714)
.+...+..+...|...|..+...|.+.|++++|+++|+++++....
T Consensus 176 ~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~ 255 (697)
T PLN03081 176 DARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGV 255 (697)
T ss_pred HHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCC
Confidence 3444444555568889999999999999999999999999765321
Q ss_pred --CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC-CCChHHHHHHHHH
Q 005108 275 --NAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQ-QADPTEVHRLQVV 351 (714)
Q Consensus 275 --~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~-~~~~~~~~~l~~~ 351 (714)
+..++..+...|.+.|++++|.+.|++.. +.+...|..+...|.+.|++++|++.|+++.. ...++..
T Consensus 256 ~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~---~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~------ 326 (697)
T PLN03081 256 VGDTFVSCALIDMYSKCGDIEDARCVFDGMP---EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQF------ 326 (697)
T ss_pred CccceeHHHHHHHHHHCCCHHHHHHHHHhCC---CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHH------
Confidence 23345667888999999999999998764 45788999999999999999999999999865 2233322
Q ss_pred HHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhh
Q 005108 352 EKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGML 431 (714)
Q Consensus 352 ~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 431 (714)
.+..+...+.+.|++++|.+.+..+++.+.......+..+...|.+.|++++|.+.|+++.+. +
T Consensus 327 -t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~---d------------ 390 (697)
T PLN03081 327 -TFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRK---N------------ 390 (697)
T ss_pred -HHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCC---C------------
Confidence 233344557889999999999999999987767788888999999999999999999998753 2
Q ss_pred hhHHHHHHHHHHHHHhCcHHHHHHHHHHHhc--cCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhcc
Q 005108 432 SEAYTFFVRAQIEMALGRFENAVTAAEKAGQ--IDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRF 509 (714)
Q Consensus 432 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~ 509 (714)
...|..+...|.+.|+.++|+++|+++.+ ..|+..... .+ ...+.+.|++++|.++|+++.+.
T Consensus 391 --~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~-~l------------l~a~~~~g~~~~a~~~f~~m~~~ 455 (697)
T PLN03081 391 --LISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFL-AV------------LSACRYSGLSEQGWEIFQSMSEN 455 (697)
T ss_pred --eeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHH-HH------------HHHHhcCCcHHHHHHHHHHHHHh
Confidence 44699999999999999999999999876 455544432 22 56788999999999999998764
Q ss_pred C--CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHH
Q 005108 510 D--PSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAES 587 (714)
Q Consensus 510 ~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~ 587 (714)
. ..+...|..+..+|.+.|++++|.+.++++ ...|+ ..+|..+...+...|+++.|...+++++++.|++...+..
T Consensus 456 ~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~-~~~p~-~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~ 533 (697)
T PLN03081 456 HRIKPRAMHYACMIELLGREGLLDEAYAMIRRA-PFKPT-VNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVV 533 (697)
T ss_pred cCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHH
Confidence 2 224578889999999999999999999875 24454 5689999999999999999999999999999999888888
Q ss_pred HHHHHHHhhhhccccccccccccceeeehhhhHHhhhccCCCc-------eEEEeecC--CCccccccchHHHHHHhhC-
Q 005108 588 LFHAQVSLKKSRGEEVYNMKFGGEVEEVSSLEQFRAAVSLPGV-------SVVHFKSA--SNLHCKQISPYVETLCGRY- 657 (714)
Q Consensus 588 L~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~e~~~~~i~~~~~-------~vv~f~a~--~c~~C~~~~p~l~~l~~~~- 657 (714)
|..++...+++++.... .....-+.+...++. .+..|.+. .++.+.+++..++++..+.
T Consensus 534 L~~~y~~~G~~~~A~~v-----------~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~ 602 (697)
T PLN03081 534 LLNLYNSSGRQAEAAKV-----------VETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEIS 602 (697)
T ss_pred HHHHHHhCCCHHHHHHH-----------HHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHH
Confidence 88887777665432221 111111111112222 23445553 4777888888888887664
Q ss_pred -----CCcEEEEEeccc----------CcchhhhCCccccc---eEEEEeCCe
Q 005108 658 -----PSINFLKVDIDE----------SPGVAHAENVRIVP---TFKIYKNGS 692 (714)
Q Consensus 658 -----~~~~~~~vd~d~----------~~~l~~~~~v~~~P---t~~~~~~G~ 692 (714)
|+..++..|+++ +++||.+||+...| ++.|+||=.
T Consensus 603 ~~gy~~~~~~~~~~~~~~~~~~~~~~hsekla~a~~l~~~~~~~~i~i~knlr 655 (697)
T PLN03081 603 EYGYVAEENELLPDVDEDEEKVSGRYHSEKLAIAFGLINTSEWTPLQITQSHR 655 (697)
T ss_pred HcCCCCCcchhhccccHHHHHHHHHhccHHHHHHhhCccCCCCCeEEEecCCE
Confidence 566777777764 77899999999998 578888843
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.1e-21 Score=196.27 Aligned_cols=303 Identities=15% Similarity=0.148 Sum_probs=239.9
Q ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH-----------------------------c
Q 005108 273 PRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVR-----------------------------L 323 (714)
Q Consensus 273 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~-----------------------------~ 323 (714)
..+...++..|.++.+.|...+|+..|..++...|-+..+|..|+.+... .
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el 240 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQEL 240 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHH
Confidence 35678888999999999999999999999999999999998888765432 2
Q ss_pred CCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH
Q 005108 324 GQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLE 403 (714)
Q Consensus 324 g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~ 403 (714)
.+.++++.-++......-+.. .......+.+.....|+++|+..|+.+.+.+|-....+-. ..++++-..+-.
T Consensus 241 ~q~~e~~~k~e~l~~~gf~~~------~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdl-ySN~LYv~~~~s 313 (559)
T KOG1155|consen 241 HQHEEALQKKERLSSVGFPNS------MYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDL-YSNVLYVKNDKS 313 (559)
T ss_pred HHHHHHHHHHHHHHhccCCcc------HHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHH-HhHHHHHHhhhH
Confidence 222333332222222100000 0111224566778889999999999999988843333332 444444444433
Q ss_pred HHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHH
Q 005108 404 DAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARA 483 (714)
Q Consensus 404 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~ 483 (714)
+-.-..+.+..++.-. ......+|+.|...++.++|+.+|+++++++|....+|.++
T Consensus 314 kLs~LA~~v~~idKyR--------------~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLm--------- 370 (559)
T KOG1155|consen 314 KLSYLAQNVSNIDKYR--------------PETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLM--------- 370 (559)
T ss_pred HHHHHHHHHHHhccCC--------------ccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHh---------
Confidence 3333444445555444 44577889999999999999999999999999999999987
Q ss_pred HHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcc
Q 005108 484 RARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEK 563 (714)
Q Consensus 484 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 563 (714)
|.-|..+++-..|++.|+.|++++|.|..+|+.+|+.|.-++...=|+-+|++|+++.|+|...|..||.||.++++
T Consensus 371 ---GHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~ 447 (559)
T KOG1155|consen 371 ---GHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNR 447 (559)
T ss_pred ---hHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhcccccccccc
Q 005108 564 WADAVRDFEVLRRELPDDNEIAESLFHAQVSLKKSRGEEVYNMKF 608 (714)
Q Consensus 564 ~~eA~~~~~~al~~~p~~~~~~~~L~~~~~~l~~~~~~~~~~~~~ 608 (714)
.++|+++|.+++.....+..+...|++++..++...+...+..++
T Consensus 448 ~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~ 492 (559)
T KOG1155|consen 448 LEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKY 492 (559)
T ss_pred HHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 999999999999999888999999999999999887776655443
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.90 E-value=4e-21 Score=206.90 Aligned_cols=319 Identities=18% Similarity=0.202 Sum_probs=263.1
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 005108 241 DAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLL 320 (714)
Q Consensus 241 ~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 320 (714)
....++..|+.++..|++++|..++.++|+++|.++.+|+.+|.+|.++|+.++|...+-.|-.++|.+.+.|..++...
T Consensus 138 ~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls 217 (895)
T KOG2076|consen 138 ELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLS 217 (895)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 46778889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHH
Q 005108 321 VRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFS----PQLSMCRVEAL 396 (714)
Q Consensus 321 ~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~----~~~~~~la~~~ 396 (714)
.++|++.+|+-+|.++++..++. .+..+.++..|.+.|+...|...|.+++...|... .+.....+..+
T Consensus 218 ~~~~~i~qA~~cy~rAI~~~p~n-------~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~ 290 (895)
T KOG2076|consen 218 EQLGNINQARYCYSRAIQANPSN-------WELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYF 290 (895)
T ss_pred HhcccHHHHHHHHHHHHhcCCcc-------hHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHH
Confidence 99999999999999999744443 24566777889999999999999999999999322 23334467788
Q ss_pred HHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhc--cCCCCHH-----
Q 005108 397 LKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQ--IDPRNVE----- 469 (714)
Q Consensus 397 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~----- 469 (714)
...++-+.|++.++.++....+-. ....+..++.+++...+++.|+........ ..+++.+
T Consensus 291 ~~~~~~e~a~~~le~~~s~~~~~~------------~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~ 358 (895)
T KOG2076|consen 291 ITHNERERAAKALEGALSKEKDEA------------SLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDE 358 (895)
T ss_pred HHhhHHHHHHHHHHHHHhhccccc------------cccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhh
Confidence 888888999999999987332221 123456778889999999999887766543 1111111
Q ss_pred ---------------------H-HHHHHh-----------------------HHHHHHHHHHHhHHhhCcCHHHHHHHHH
Q 005108 470 ---------------------V-AVLLNN-----------------------VKLVARARARGNDLFKSERFTEACQAYG 504 (714)
Q Consensus 470 ---------------------~-~~~l~~-----------------------l~~~~~~~~~g~~~~~~g~~~~A~~~~~ 504 (714)
+ ...+.- .....-+.+++.+|...|+|.+|+.+|.
T Consensus 359 ~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~ 438 (895)
T KOG2076|consen 359 RRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLS 438 (895)
T ss_pred hccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 1 111000 0223346788999999999999999999
Q ss_pred HhhccCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Q 005108 505 EGLRFDPS-NSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRREL 578 (714)
Q Consensus 505 ~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 578 (714)
.+....+. +..+|+.+|.||..+|.+++|++.|++++.+.|++.++...|+.++.++|+.++|.+.++....-+
T Consensus 439 ~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D 513 (895)
T KOG2076|consen 439 PITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPD 513 (895)
T ss_pred HHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCC
Confidence 99887654 478999999999999999999999999999999999999999999999999999999999877333
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.4e-21 Score=198.60 Aligned_cols=288 Identities=18% Similarity=0.178 Sum_probs=247.2
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 005108 240 GDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSL 319 (714)
Q Consensus 240 ~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~ 319 (714)
++.+.+...++.++..++|++.++.++..++.+|-+..++-....|+.++|+..+=...-.+.++..|+.+..|+..|..
T Consensus 242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~Y 321 (611)
T KOG1173|consen 242 ENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCY 321 (611)
T ss_pred hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHH
Confidence 46788888899999999999999999999999988877776666688899988888877888888899988889988888
Q ss_pred HHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 005108 320 LVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKL 399 (714)
Q Consensus 320 ~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~ 399 (714)
|...|++.+|.++|. ++..++|.+.+.+. ..|..|...
T Consensus 322 Yl~i~k~seARry~S-----------------------------------------Kat~lD~~fgpaWl-~fghsfa~e 359 (611)
T KOG1173|consen 322 YLMIGKYSEARRYFS-----------------------------------------KATTLDPTFGPAWL-AFGHSFAGE 359 (611)
T ss_pred HHHhcCcHHHHHHHH-----------------------------------------HHhhcCccccHHHH-HHhHHhhhc
Confidence 888888777777764 44566776655544 489999999
Q ss_pred CCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHH
Q 005108 400 HQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKL 479 (714)
Q Consensus 400 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~ 479 (714)
++.|+|+.+|..|-++-|.. ..-...+|.-|...++++-|.++|.+|+.+.|.++-+...+
T Consensus 360 ~EhdQAmaaY~tAarl~~G~--------------hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~El----- 420 (611)
T KOG1173|consen 360 GEHDQAMAAYFTAARLMPGC--------------HLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHEL----- 420 (611)
T ss_pred chHHHHHHHHHHHHHhccCC--------------cchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhh-----
Confidence 99999999999999988887 44567788999999999999999999999999999887655
Q ss_pred HHHHHHHHhHHhhCcCHHHHHHHHHHhhccCC----C---CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHH
Q 005108 480 VARARARGNDLFKSERFTEACQAYGEGLRFDP----S---NSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALL 552 (714)
Q Consensus 480 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p----~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 552 (714)
|.+.+..+.|.+|..+|+.++..-+ . -...+.+||.+|.+++++++|+.+|+++|.+.|.+..++-
T Consensus 421 -------gvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~a 493 (611)
T KOG1173|consen 421 -------GVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHA 493 (611)
T ss_pred -------hheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHH
Confidence 9999999999999999999984321 1 2456899999999999999999999999999999999999
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 005108 553 RRAASNSKLEKWADAVRDFEVLRRELPDDNEIAESLFHAQVSL 595 (714)
Q Consensus 553 ~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~L~~~~~~l 595 (714)
.+|.+|..+|+++.|+++|.+++-+.|++.-+.+.|..+....
T Consensus 494 sig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~~ 536 (611)
T KOG1173|consen 494 SIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIEDS 536 (611)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999888766553
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.2e-23 Score=209.75 Aligned_cols=264 Identities=23% Similarity=0.302 Sum_probs=120.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 005108 244 ELKRMGNELYRKGCFGEALSMYDKAISL--APRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLV 321 (714)
Q Consensus 244 ~~~~~g~~~~~~g~~~~Al~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~ 321 (714)
..+.+|..++..|++++|++++++.+.. .|++..+|..+|.+...++++++|+..|++++..++.++..+..++.+ .
T Consensus 10 ~~l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~ 88 (280)
T PF13429_consen 10 EALRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-L 88 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-c
Confidence 3346799999999999999999776544 488899999999999999999999999999999999888888888888 6
Q ss_pred HcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 005108 322 RLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQ 401 (714)
Q Consensus 322 ~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~ 401 (714)
..+++++|+.+++++.+. .+ .+..+...+.++...++
T Consensus 89 ~~~~~~~A~~~~~~~~~~-----------------------------------------~~--~~~~l~~~l~~~~~~~~ 125 (280)
T PF13429_consen 89 QDGDPEEALKLAEKAYER-----------------------------------------DG--DPRYLLSALQLYYRLGD 125 (280)
T ss_dssp ------------------------------------------------------------------------H-HHHTT-
T ss_pred cccccccccccccccccc-----------------------------------------cc--ccchhhHHHHHHHHHhH
Confidence 888888888877554321 11 12233345667888888
Q ss_pred HHHHHHHhhccccCC--CCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHH
Q 005108 402 LEDAESSLSNIPKIE--PSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKL 479 (714)
Q Consensus 402 ~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~ 479 (714)
++++...++++.... +.+ ...|..+|.++.+.|+.++|+..|+++++.+|++..++..+
T Consensus 126 ~~~~~~~l~~~~~~~~~~~~--------------~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l----- 186 (280)
T PF13429_consen 126 YDEAEELLEKLEELPAAPDS--------------ARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNAL----- 186 (280)
T ss_dssp HHHHHHHHHHHHH-T---T---------------HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHH-----
T ss_pred HHHHHHHHHHHHhccCCCCC--------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH-----
Confidence 988888888876544 333 77899999999999999999999999999999999988766
Q ss_pred HHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005108 480 VARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNS 559 (714)
Q Consensus 480 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 559 (714)
+.++...|+++++.+.++...+..|.++.++..+|.+|..+|++++|+.+|+++++.+|+++.++..+|.++.
T Consensus 187 -------~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~ 259 (280)
T PF13429_consen 187 -------AWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALE 259 (280)
T ss_dssp -------HHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT
T ss_pred -------HHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccccccccccccc
Confidence 8889999999999999988888888999999999999999999999999999999999999999999999999
Q ss_pred HhccHHHHHHHHHHHHHh
Q 005108 560 KLEKWADAVRDFEVLRRE 577 (714)
Q Consensus 560 ~~g~~~eA~~~~~~al~~ 577 (714)
..|++++|..+++++++.
T Consensus 260 ~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 260 QAGRKDEALRLRRQALRL 277 (280)
T ss_dssp ------------------
T ss_pred cccccccccccccccccc
Confidence 999999999999988764
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.88 E-value=4e-20 Score=182.21 Aligned_cols=316 Identities=13% Similarity=0.018 Sum_probs=272.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Q 005108 246 KRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVRLGQ 325 (714)
Q Consensus 246 ~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~ 325 (714)
+..+.++....-+.-+..++-.-...-|+|...+..+|.+++..|++++|+..|+++.-+||......-.+|.++.+.|+
T Consensus 202 ka~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~ 281 (564)
T KOG1174|consen 202 KALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGG 281 (564)
T ss_pred HHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccC
Confidence 34555555555666677777777788999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 005108 326 VENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDA 405 (714)
Q Consensus 326 ~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A 405 (714)
+++-...........+.. ...|+-.+......+++..|+.+-+++|..++.+.+.+. ..|.++...++.++|
T Consensus 282 ~e~~~~L~~~Lf~~~~~t-------a~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~ali-lKG~lL~~~~R~~~A 353 (564)
T KOG1174|consen 282 CEQDSALMDYLFAKVKYT-------ASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALI-LKGRLLIALERHTQA 353 (564)
T ss_pred HhhHHHHHHHHHhhhhcc-------hhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHH-hccHHHHhccchHHH
Confidence 988766655544322111 123444455577889999999999999999998766554 599999999999999
Q ss_pred HHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHH
Q 005108 406 ESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARA 485 (714)
Q Consensus 406 ~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~ 485 (714)
+-.|+.+..+.|.. ...|..+..+|...|++.||....+.++...|.+...+.++
T Consensus 354 ~IaFR~Aq~Lap~r--------------L~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~----------- 408 (564)
T KOG1174|consen 354 VIAFRTAQMLAPYR--------------LEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLF----------- 408 (564)
T ss_pred HHHHHHHHhcchhh--------------HHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhh-----------
Confidence 99999999999988 77899999999999999999999999999999998887766
Q ss_pred HH-h-HHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcc
Q 005108 486 RG-N-DLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEK 563 (714)
Q Consensus 486 ~g-~-~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 563 (714)
| . ++..----++|.+++++++++.|....+...+|.++...|.+++++..+++.+...|++ ..+..||.++...+.
T Consensus 409 -g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~-~LH~~Lgd~~~A~Ne 486 (564)
T KOG1174|consen 409 -GTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDV-NLHNHLGDIMRAQNE 486 (564)
T ss_pred -cceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcccc-HHHHHHHHHHHHhhh
Confidence 4 3 33444567899999999999999999999999999999999999999999999999885 588999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Q 005108 564 WADAVRDFEVLRRELPDDNEIAESLFHAQVSLK 596 (714)
Q Consensus 564 ~~eA~~~~~~al~~~p~~~~~~~~L~~~~~~l~ 596 (714)
+++|+++|..|+.++|++....+.|.......+
T Consensus 487 ~Q~am~~y~~ALr~dP~~~~sl~Gl~~lEK~~~ 519 (564)
T KOG1174|consen 487 PQKAMEYYYKALRQDPKSKRTLRGLRLLEKSDD 519 (564)
T ss_pred HHHHHHHHHHHHhcCccchHHHHHHHHHHhccC
Confidence 999999999999999999999999987766554
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.5e-20 Score=216.43 Aligned_cols=400 Identities=16% Similarity=0.049 Sum_probs=272.3
Q ss_pred CCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CcHHH
Q 005108 236 GICGGDAEELKRMGNELYRKGCFGEALSMYDKAISLA--PRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDP-NYWRA 312 (714)
Q Consensus 236 ~~~p~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~a 312 (714)
.+...|...|..+...|.+.|++++|+++|+++.+.. |+. ..+..+-.++...|++++|.+.++.+++... .+..+
T Consensus 348 ~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~-~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~ 426 (857)
T PLN03077 348 RMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDE-ITIASVLSACACLGDLDVGVKLHELAERKGLISYVVV 426 (857)
T ss_pred hCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCc-eeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHH
Confidence 3444556666666666666666666666666665432 332 2333333344455555555555555544332 23556
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHH--------------
Q 005108 313 HQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAI-------------- 378 (714)
Q Consensus 313 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al-------------- 378 (714)
+..+...|.+.|++++|++.|+++.+. +...+..+. ..|.+.|++++|+..|++++
T Consensus 427 ~n~Li~~y~k~g~~~~A~~vf~~m~~~-d~vs~~~mi---------~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL 496 (857)
T PLN03077 427 ANALIEMYSKCKCIDKALEVFHNIPEK-DVISWTSII---------AGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAAL 496 (857)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHhCCCC-CeeeHHHHH---------HHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHH
Confidence 777777777788888887777776542 222222111 11344555555555555554
Q ss_pred --------------------HcCCCCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHH
Q 005108 379 --------------------AAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFF 438 (714)
Q Consensus 379 --------------------~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~ 438 (714)
+.+......++..+..+|.+.|++++|...|+.. +.+ ...|.
T Consensus 497 ~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~----~~d--------------~~s~n 558 (857)
T PLN03077 497 SACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH----EKD--------------VVSWN 558 (857)
T ss_pred HHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc----CCC--------------hhhHH
Confidence 4433333334455668899999999999999886 233 56899
Q ss_pred HHHHHHHHhCcHHHHHHHHHHHhc--cCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhcc---CCCC
Q 005108 439 VRAQIEMALGRFENAVTAAEKAGQ--IDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRF---DPSN 513 (714)
Q Consensus 439 ~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~ 513 (714)
.+...|...|+.++|+++|+++.+ ..|+....... -..+.+.|++++|.++|+++.+. .| +
T Consensus 559 ~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~l-------------l~a~~~~g~v~ea~~~f~~M~~~~gi~P-~ 624 (857)
T PLN03077 559 ILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISL-------------LCACSRSGMVTQGLEYFHSMEEKYSITP-N 624 (857)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHH-------------HHHHhhcChHHHHHHHHHHHHHHhCCCC-c
Confidence 999999999999999999999886 45666554433 34588899999999999998843 34 5
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005108 514 SVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAESLFHAQV 593 (714)
Q Consensus 514 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~L~~~~~ 593 (714)
...|..+..+|.+.|++++|.+.++++ .+.|+ ..+|..+-..+...++.+.+....+++++++|++...+..|..++.
T Consensus 625 ~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya 702 (857)
T PLN03077 625 LKHYACVVDLLGRAGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYA 702 (857)
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHH
Confidence 688999999999999999999999986 35666 6778888888888999999999999999999999999999999888
Q ss_pred HhhhhccccccccccccceeeehhhhHHhhhccCCCc-------eEEEeec--CCCccccccchHHHHHHhhC------C
Q 005108 594 SLKKSRGEEVYNMKFGGEVEEVSSLEQFRAAVSLPGV-------SVVHFKS--ASNLHCKQISPYVETLCGRY------P 658 (714)
Q Consensus 594 ~l~~~~~~~~~~~~~~~~~~~i~~~e~~~~~i~~~~~-------~vv~f~a--~~c~~C~~~~p~l~~l~~~~------~ 658 (714)
..++|++... +.....-..+...++. .+..|.+ ..+++..+|+..++++..++ |
T Consensus 703 ~~g~~~~a~~-----------vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~ 771 (857)
T PLN03077 703 DAGKWDEVAR-----------VRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAG 771 (857)
T ss_pred HCCChHHHHH-----------HHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCC
Confidence 8777664322 2222222222222321 2344544 35888889999999887765 4
Q ss_pred CcEEEEEeccc----------CcchhhhCCccccc---eEEEEeCCe
Q 005108 659 SINFLKVDIDE----------SPGVAHAENVRIVP---TFKIYKNGS 692 (714)
Q Consensus 659 ~~~~~~vd~d~----------~~~l~~~~~v~~~P---t~~~~~~G~ 692 (714)
+..++. |+++ +++||.+||+..+| ++.|+||=.
T Consensus 772 ~~~~~~-~~~~~~k~~~~~~hse~la~a~~l~~~~~~~~i~i~knlr 817 (857)
T PLN03077 772 SESSSM-DEIEVSKDDIFCGHSERLAIAFGLINTVPGMPIWVTKNLY 817 (857)
T ss_pred Ccchhc-cccHHHHHHHHHhccHHHHHHHhhhcCCCCCeEEEeCCCE
Confidence 555444 4332 78899999999998 477878744
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.9e-21 Score=190.85 Aligned_cols=340 Identities=19% Similarity=0.173 Sum_probs=267.4
Q ss_pred CCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcH
Q 005108 236 GICGGDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRN-----AAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYW 310 (714)
Q Consensus 236 ~~~p~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 310 (714)
++.|+....-.++|++++++.+|.+|+++|+.++..-|.- ..++.++|..+.+.|+|++|+..|+.+++..|+..
T Consensus 231 kmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~~pn~~ 310 (840)
T KOG2003|consen 231 KMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEAPNFI 310 (840)
T ss_pred cccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhCccHH
Confidence 4566666777788889999999999999999988877742 55777888888888888888888888888888654
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhhcCC-------------CChHHHH--------HHH--------------------
Q 005108 311 RAHQRLGSLLVRLGQVENARRHLCLSGQQ-------------ADPTEVH--------RLQ-------------------- 349 (714)
Q Consensus 311 ~a~~~la~~~~~~g~~~~A~~~~~~al~~-------------~~~~~~~--------~l~-------------------- 349 (714)
+-++|..+++..|+-++-.+.|.+++.. .+|.... .+.
T Consensus 311 -a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~ki 389 (840)
T KOG2003|consen 311 -AALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKI 389 (840)
T ss_pred -hhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 3445666777777777777777776541 0111000 000
Q ss_pred ------------------------------------------------------------------------HH------
Q 005108 350 ------------------------------------------------------------------------VV------ 351 (714)
Q Consensus 350 ------------------------------------------------------------------------~~------ 351 (714)
.+
T Consensus 390 iapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqgg 469 (840)
T KOG2003|consen 390 IAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGG 469 (840)
T ss_pred hccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcc
Confidence 00
Q ss_pred ---------------------HHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHhh
Q 005108 352 ---------------------EKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLS 410 (714)
Q Consensus 352 ---------------------~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~ 410 (714)
....+++.+.+..|++++|.+.|++++..+.. ..+.++++|..+..+|++++|+.+|-
T Consensus 470 k~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndas-c~ealfniglt~e~~~~ldeald~f~ 548 (840)
T KOG2003|consen 470 KDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDAS-CTEALFNIGLTAEALGNLDEALDCFL 548 (840)
T ss_pred cchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchH-HHHHHHHhcccHHHhcCHHHHHHHHH
Confidence 00000122233567888888888888877655 34555668888888888888888888
Q ss_pred ccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHH
Q 005108 411 NIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDL 490 (714)
Q Consensus 411 ~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~ 490 (714)
++..+--++ +.+++.++.+|..+.+..+|++++-++..+-|+++.++..+ |.+|
T Consensus 549 klh~il~nn--------------~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl------------~dly 602 (840)
T KOG2003|consen 549 KLHAILLNN--------------AEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKL------------ADLY 602 (840)
T ss_pred HHHHHHHhh--------------HHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHH------------HHHh
Confidence 776665555 77888999999999999999999999999999999888766 8999
Q ss_pred hhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHH
Q 005108 491 FKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRD 570 (714)
Q Consensus 491 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~ 570 (714)
-+.|+-.+|.+++-...+..|.+.+...+||..|....-+++|+.+|+++--+.|+.....+.++.|+.+.|+|++|.+.
T Consensus 603 dqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~ 682 (840)
T KOG2003|consen 603 DQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDL 682 (840)
T ss_pred hcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhhhhccccc
Q 005108 571 FEVLRRELPDDNEIAESLFHAQVSLKKSRGEEV 603 (714)
Q Consensus 571 ~~~al~~~p~~~~~~~~L~~~~~~l~~~~~~~~ 603 (714)
|+..-+..|++.+....|.++.-.++-.+.++|
T Consensus 683 yk~~hrkfpedldclkflvri~~dlgl~d~key 715 (840)
T KOG2003|consen 683 YKDIHRKFPEDLDCLKFLVRIAGDLGLKDAKEY 715 (840)
T ss_pred HHHHHHhCccchHHHHHHHHHhccccchhHHHH
Confidence 999999999999999888887766665544444
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.6e-19 Score=201.52 Aligned_cols=328 Identities=13% Similarity=0.068 Sum_probs=256.8
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 005108 241 DAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLL 320 (714)
Q Consensus 241 ~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 320 (714)
....+..+|..+..+|+|++|++.|+++++.+|+++.++..++.++...++.++|++.+++++..+|.+... ..++.++
T Consensus 101 ~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~ 179 (822)
T PRK14574 101 SSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLN 179 (822)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHH
Confidence 344444558899999999999999999999999999999999999999999999999999999999986554 6667777
Q ss_pred HHcCCHHHHHHHHHhhcCC-C-ChHHHHHH--------------------------------------------------
Q 005108 321 VRLGQVENARRHLCLSGQQ-A-DPTEVHRL-------------------------------------------------- 348 (714)
Q Consensus 321 ~~~g~~~~A~~~~~~al~~-~-~~~~~~~l-------------------------------------------------- 348 (714)
...++..+|++.|++++.. + +......+
T Consensus 180 ~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~ 259 (822)
T PRK14574 180 RATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRS 259 (822)
T ss_pred HhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhccccccc
Confidence 6678887799999988762 1 11111100
Q ss_pred ------------HHHH------------------HHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 005108 349 ------------QVVE------------------KHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLK 398 (714)
Q Consensus 349 ------------~~~~------------------~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~ 398 (714)
..++ ..+.+...+...+++.++++.|+.+..........+....|.+|+.
T Consensus 260 ~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~ 339 (822)
T PRK14574 260 ETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYID 339 (822)
T ss_pred chhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHh
Confidence 0000 0111223344667778888888777766645455666678999999
Q ss_pred cCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCC------------
Q 005108 399 LHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPR------------ 466 (714)
Q Consensus 399 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------------ 466 (714)
+++.++|+.+|+.++...+.... .-........|...|+..++|++|..++++..+..|-
T Consensus 340 ~~~P~kA~~l~~~~~~~~~~~~~--------~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~p 411 (822)
T PRK14574 340 RRLPEKAAPILSSLYYSDGKTFR--------NSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEP 411 (822)
T ss_pred cCCcHHHHHHHHHHhhccccccC--------CCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCC
Confidence 99999999999999876542100 0001223466788899999999999999999875551
Q ss_pred CHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Q 005108 467 NVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPN 546 (714)
Q Consensus 467 ~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 546 (714)
|++.. .....++.++...|++.+|++.+++.+...|.|..++..+|.++...|.+.+|+..++.++.++|+
T Consensus 412 n~d~~---------~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~ 482 (822)
T PRK14574 412 NDDWI---------EGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPR 482 (822)
T ss_pred CccHH---------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCc
Confidence 11111 111234888999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHH
Q 005108 547 YTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAE 586 (714)
Q Consensus 547 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~ 586 (714)
+..+...++.++..+++|.+|....+++++..|+++.+..
T Consensus 483 ~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~~~ 522 (822)
T PRK14574 483 SLILERAQAETAMALQEWHQMELLTDDVISRSPEDIPSQE 522 (822)
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhHHH
Confidence 9999999999999999999999999999999999997765
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.3e-19 Score=174.71 Aligned_cols=305 Identities=17% Similarity=0.171 Sum_probs=249.5
Q ss_pred hhcCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc---
Q 005108 233 NRGGICGGDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNY--- 309 (714)
Q Consensus 233 ~~~~~~p~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--- 309 (714)
.....+|++-.+++..|..|+..|+-.-|+.-+.+++++.|+...+...+|.+++++|++++|+..|+.+++-+|.+
T Consensus 63 aAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~ 142 (504)
T KOG0624|consen 63 AAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLV 142 (504)
T ss_pred HHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchh
Confidence 33458999999999999999999999999999999999999999999999999999999999999999999999954
Q ss_pred HHHHHHHH------------HHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHH
Q 005108 310 WRAHQRLG------------SLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAA 377 (714)
Q Consensus 310 ~~a~~~la------------~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~a 377 (714)
.+++..++ ..+...|++..|+.++.+.++...-. +..+..++.+|...|+...|+.-+..+
T Consensus 143 ~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wd-------a~l~~~Rakc~i~~~e~k~AI~Dlk~a 215 (504)
T KOG0624|consen 143 LEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWD-------ASLRQARAKCYIAEGEPKKAIHDLKQA 215 (504)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcch-------hHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 33333333 33445688889998888877532222 234556788899999999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHH
Q 005108 378 IAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAA 457 (714)
Q Consensus 378 l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 457 (714)
-++..++ .+.++.++.+++..|+.+.++...++.++++|+... .-.++..+....-...-+......++|.++++..
T Consensus 216 skLs~Dn-Te~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~--Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~g 292 (504)
T KOG0624|consen 216 SKLSQDN-TEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKL--CFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAG 292 (504)
T ss_pred Hhccccc-hHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhh--HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 9988774 566667999999999999999999999999999732 2222222333333344456667789999999999
Q ss_pred HHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Q 005108 458 EKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDS 537 (714)
Q Consensus 458 ~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 537 (714)
++.++.+|....+.+... +.+..++...+++.+|+..+.++|+++|++..+++.+|.+|+-..+|+.||..|
T Consensus 293 e~vlk~ep~~~~ir~~~~--------r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dy 364 (504)
T KOG0624|consen 293 EKVLKNEPEETMIRYNGF--------RVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDY 364 (504)
T ss_pred HHHHhcCCcccceeeeee--------heeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 999999998655443221 124778899999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCHHHHHHHH
Q 005108 538 NQALLIQPNYTKALLRRA 555 (714)
Q Consensus 538 ~~al~~~p~~~~~~~~la 555 (714)
++|.+.++++..+...+-
T Consensus 365 e~A~e~n~sn~~~reGle 382 (504)
T KOG0624|consen 365 EKALELNESNTRAREGLE 382 (504)
T ss_pred HHHHhcCcccHHHHHHHH
Confidence 999999999987765443
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.1e-19 Score=201.93 Aligned_cols=157 Identities=11% Similarity=-0.029 Sum_probs=126.1
Q ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHhccCCC----CHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccC
Q 005108 435 YTFFVRAQIEMALGRFENAVTAAEKAGQIDPR----NVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFD 510 (714)
Q Consensus 435 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~ 510 (714)
++....|..|+.+++.++|+.+|++++.-.+. ..+.. ....+-..|...++|++|..++++..+..
T Consensus 328 y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~----------~~~~L~yA~ld~e~~~~A~~~l~~~~~~~ 397 (822)
T PRK14574 328 YARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLL----------DADDLYYSLNESEQLDKAYQFAVNYSEQT 397 (822)
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchH----------HHHHHHHHHHhcccHHHHHHHHHHHHhcC
Confidence 34455566667777777777777776654421 11110 01134778899999999999999998844
Q ss_pred C---------------CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 005108 511 P---------------SNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLR 575 (714)
Q Consensus 511 p---------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al 575 (714)
| +...+...++.++...|++.+|++.+++.+...|.+..++..+|.++...|++.+|.+.++.++
T Consensus 398 p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~ 477 (822)
T PRK14574 398 PYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVE 477 (822)
T ss_pred CcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 4 2357788899999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHhhhhccc
Q 005108 576 RELPDDNEIAESLFHAQVSLKKSRGE 601 (714)
Q Consensus 576 ~~~p~~~~~~~~L~~~~~~l~~~~~~ 601 (714)
.++|++..+...+..+...+.++++.
T Consensus 478 ~l~P~~~~~~~~~~~~al~l~e~~~A 503 (822)
T PRK14574 478 SLAPRSLILERAQAETAMALQEWHQM 503 (822)
T ss_pred hhCCccHHHHHHHHHHHHhhhhHHHH
Confidence 99999999999999888888777654
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.5e-19 Score=191.04 Aligned_cols=305 Identities=14% Similarity=0.005 Sum_probs=247.1
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcH-HHHHHHHHH
Q 005108 241 DAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYW-RAHQRLGSL 319 (714)
Q Consensus 241 ~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~a~~~la~~ 319 (714)
........|...+..|+++.|.+.+.++.+..|+....+...|.++.++|++++|.++++++.+..|++. .+...++.+
T Consensus 83 k~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l 162 (409)
T TIGR00540 83 KAQKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRI 162 (409)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHH
Confidence 3556678899999999999999999999999998888889999999999999999999999999988875 566667999
Q ss_pred HHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH---HHHHHH
Q 005108 320 LVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSM---CRVEAL 396 (714)
Q Consensus 320 ~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~---~la~~~ 396 (714)
+...|++++|+..++++.+..+... ..+...+..+...|+|++|++.+.+..+........... .....+
T Consensus 163 ~l~~~~~~~Al~~l~~l~~~~P~~~-------~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~ 235 (409)
T TIGR00540 163 LLAQNELHAARHGVDKLLEMAPRHK-------EVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGL 235 (409)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999987322211 123345566899999999999999999886543333321 122222
Q ss_pred HHcCCHHHHHHHhhccccCCC----CCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHH
Q 005108 397 LKLHQLEDAESSLSNIPKIEP----STVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAV 472 (714)
Q Consensus 397 ~~~g~~~~A~~~~~~al~~~p----~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 472 (714)
...+..+++.+.+.++.+..| ++ ...+..++..+...|++++|++.++++++..|++....+
T Consensus 236 l~~~~~~~~~~~L~~~~~~~p~~~~~~--------------~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~ 301 (409)
T TIGR00540 236 LDEAMADEGIDGLLNWWKNQPRHRRHN--------------IALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISL 301 (409)
T ss_pred HHHHHHhcCHHHHHHHHHHCCHHHhCC--------------HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchh
Confidence 444444555556666666666 34 778999999999999999999999999999999875321
Q ss_pred HHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCH--HHHHHHHHHHHHhCCHHHHHHHHH--HHHHhCCCCH
Q 005108 473 LLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNS--VLYCNRAACWFKLGQWERSVEDSN--QALLIQPNYT 548 (714)
Q Consensus 473 ~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~la~~~~~~g~~~~A~~~~~--~al~~~p~~~ 548 (714)
.+ -........++.+++++.++++++..|+++ .++..+|.++++.|+|++|.++|+ ++++..|+..
T Consensus 302 ~~----------l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~ 371 (409)
T TIGR00540 302 PL----------CLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAN 371 (409)
T ss_pred HH----------HHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHH
Confidence 11 013344556889999999999999999999 899999999999999999999999 6888889866
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHh
Q 005108 549 KALLRRAASNSKLEKWADAVRDFEVLRRE 577 (714)
Q Consensus 549 ~~~~~la~~~~~~g~~~eA~~~~~~al~~ 577 (714)
. +..+|.++.++|+.++|.++|++++..
T Consensus 372 ~-~~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 372 D-LAMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred H-HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5 669999999999999999999998764
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2e-19 Score=201.05 Aligned_cols=247 Identities=13% Similarity=0.017 Sum_probs=128.4
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC---------CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHH
Q 005108 258 FGEALSMYDKAISLAPRNAAFRSNRAAALTGL---------GRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVRLGQVEN 328 (714)
Q Consensus 258 ~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~ 328 (714)
+++|+.+|+++++++|+++.+|..+|.+|..+ +++++|+..++++++++|++..+|..+|.++...|++++
T Consensus 277 ~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~ 356 (553)
T PRK12370 277 LQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIV 356 (553)
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHH
Confidence 45566666666666666666665555555432 225566666666666666666655555555555444444
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 005108 329 ARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESS 408 (714)
Q Consensus 329 A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~ 408 (714)
|+..| +++++++|++ ...+..+|.++...|++++|+..
T Consensus 357 A~~~~-----------------------------------------~~Al~l~P~~-~~a~~~lg~~l~~~G~~~eAi~~ 394 (553)
T PRK12370 357 GSLLF-----------------------------------------KQANLLSPIS-ADIKYYYGWNLFMAGQLEEALQT 394 (553)
T ss_pred HHHHH-----------------------------------------HHHHHhCCCC-HHHHHHHHHHHHHCCCHHHHHHH
Confidence 44433 3444445542 33344456666666666666666
Q ss_pred hhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccC-CCCHHHHHHHHhHHHHHHHHHHH
Q 005108 409 LSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQID-PRNVEVAVLLNNVKLVARARARG 487 (714)
Q Consensus 409 ~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~l~~~~~~~~~g 487 (714)
++++++++|.+ ...++.++.+++..|++++|+..+++++... |+++..+..+ |
T Consensus 395 ~~~Al~l~P~~--------------~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~l------------a 448 (553)
T PRK12370 395 INECLKLDPTR--------------AAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQ------------V 448 (553)
T ss_pred HHHHHhcCCCC--------------hhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHH------------H
Confidence 66666666655 2233334444555556666666666655443 4455444433 5
Q ss_pred hHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHH
Q 005108 488 NDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADA 567 (714)
Q Consensus 488 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA 567 (714)
.++...|++++|+..+++++...|.+..++..++..|...|+ +|...++++++..-....-......+|.-.|+.+.+
T Consensus 449 ~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~ 526 (553)
T PRK12370 449 MFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSE--RALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAE 526 (553)
T ss_pred HHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH--HHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHH
Confidence 555556666666666665555555555555555555555552 444444444432211111112244555555555555
Q ss_pred HHHHHHHH
Q 005108 568 VRDFEVLR 575 (714)
Q Consensus 568 ~~~~~~al 575 (714)
... +++.
T Consensus 527 ~~~-~~~~ 533 (553)
T PRK12370 527 KMW-NKFK 533 (553)
T ss_pred HHH-HHhh
Confidence 444 4433
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.1e-18 Score=175.56 Aligned_cols=322 Identities=16% Similarity=0.094 Sum_probs=267.5
Q ss_pred CCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHH
Q 005108 236 GICGGDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQR 315 (714)
Q Consensus 236 ~~~p~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~ 315 (714)
...|.+-..|...+..--.-|..++-..++++++...|.....|...+..+...|+...|...+..+++.+|++.+.|+.
T Consensus 544 qvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwla 623 (913)
T KOG0495|consen 544 QVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLA 623 (913)
T ss_pred hhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHH
Confidence 46677777777777777777888888888888888888888888888888888899999999999999999999899988
Q ss_pred HHHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 005108 316 LGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEA 395 (714)
Q Consensus 316 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~ 395 (714)
...+.....+++.|..+|.++....... ..++.-+.....+++.++|++.++++++..|++ ..+|..+|.+
T Consensus 624 avKle~en~e~eraR~llakar~~sgTe--------Rv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f-~Kl~lmlGQi 694 (913)
T KOG0495|consen 624 AVKLEFENDELERARDLLAKARSISGTE--------RVWMKSANLERYLDNVEEALRLLEEALKSFPDF-HKLWLMLGQI 694 (913)
T ss_pred HHHHhhccccHHHHHHHHHHHhccCCcc--------hhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCch-HHHHHHHhHH
Confidence 8888899999999999998886633322 224444455667899999999999999999985 6777889999
Q ss_pred HHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHH
Q 005108 396 LLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLN 475 (714)
Q Consensus 396 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 475 (714)
+.++++.+.|.+.|...++.-|.. .-.|..++.+..+.|+.-.|...++++.-.+|++...|...
T Consensus 695 ~e~~~~ie~aR~aY~~G~k~cP~~--------------ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~- 759 (913)
T KOG0495|consen 695 EEQMENIEMAREAYLQGTKKCPNS--------------IPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLES- 759 (913)
T ss_pred HHHHHHHHHHHHHHHhccccCCCC--------------chHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHH-
Confidence 999999999999999999999998 66899999999999999999999999999999999999765
Q ss_pred hHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 005108 476 NVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRA 555 (714)
Q Consensus 476 ~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 555 (714)
...-++.|+.++|...+.+||+..|++..+|..-..+.-.-++-.++++. ++...+++.++...|
T Consensus 760 -----------Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DA----Lkkce~dphVllaia 824 (913)
T KOG0495|consen 760 -----------IRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDA----LKKCEHDPHVLLAIA 824 (913)
T ss_pred -----------HHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHH----HHhccCCchhHHHHH
Confidence 66788899999999999999999998888777666666555554444443 344556777888888
Q ss_pred HHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Q 005108 556 ASNSKLEKWADAVRDFEVLRRELPDDNEIAESLFHAQVSLK 596 (714)
Q Consensus 556 ~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~L~~~~~~l~ 596 (714)
..+....++++|.+.|+++++.+|++.+++-.+.+.+...+
T Consensus 825 ~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG 865 (913)
T KOG0495|consen 825 KLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHG 865 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhC
Confidence 88888888888888888888888888888877777666665
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.5e-20 Score=191.22 Aligned_cols=266 Identities=14% Similarity=0.074 Sum_probs=214.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Q 005108 245 LKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVRLG 324 (714)
Q Consensus 245 ~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g 324 (714)
-+..|..+++.|++.+|+-+|+.+++.+|.+.++|..||.+....++-..|+..++++++++|++.+++..||..|...|
T Consensus 288 Pf~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg 367 (579)
T KOG1125|consen 288 PFKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEG 367 (579)
T ss_pred hHHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhh
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHcCCHH
Q 005108 325 QVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGAD-FSPQLSMCRVEALLKLHQLE 403 (714)
Q Consensus 325 ~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~-~~~~~~~~la~~~~~~g~~~ 403 (714)
.-.+|+.++.+.+....+........................+..-.+.|-.+....|. ..++++..+|.+|...|+|+
T Consensus 368 ~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efd 447 (579)
T KOG1125|consen 368 LQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFD 447 (579)
T ss_pred hHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHH
Confidence 99999999998865322221111000000000000001111223344555566666663 67889999999999999999
Q ss_pred HHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHH
Q 005108 404 DAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARA 483 (714)
Q Consensus 404 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~ 483 (714)
+|+.+|+.++...|++ ...|..+|-.+..-.+.++|+..|++|+++.|....+++.+
T Consensus 448 raiDcf~~AL~v~Pnd--------------~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNl--------- 504 (579)
T KOG1125|consen 448 RAVDCFEAALQVKPND--------------YLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNL--------- 504 (579)
T ss_pred HHHHHHHHHHhcCCch--------------HHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhh---------
Confidence 9999999999999999 88999999999999999999999999999999999999877
Q ss_pred HHHHhHHhhCcCHHHHHHHHHHhhccCCCC----------HHHHHHHHHHHHHhCCHHHHHHH
Q 005108 484 RARGNDLFKSERFTEACQAYGEGLRFDPSN----------SVLYCNRAACWFKLGQWERSVED 536 (714)
Q Consensus 484 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~----------~~~~~~la~~~~~~g~~~~A~~~ 536 (714)
|..++.+|.|++|+++|-.||.+.+.. ..+|..|=.++..+++.+-+...
T Consensus 505 ---gIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 505 ---GISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred ---hhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 999999999999999999999886541 24666666666666666654443
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1e-17 Score=179.64 Aligned_cols=300 Identities=12% Similarity=0.030 Sum_probs=236.1
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHHCCCHHHHHHHHHHHHhcCCCcHHH-HHHHHH
Q 005108 241 DAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNR-AAALTGLGRIGEAVKECEEAVRLDPNYWRA-HQRLGS 318 (714)
Q Consensus 241 ~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~l-a~~~~~~g~~~~A~~~~~~al~~~p~~~~a-~~~la~ 318 (714)
.+...+..|...+..|+|++|.+...++-+..+ ++..++.+ +.+..+.|+++.|..+|+++.+.+|++..+ ....+.
T Consensus 83 ~~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~-~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~ 161 (398)
T PRK10747 83 RARKQTEQALLKLAEGDYQQVEKLMTRNADHAE-QPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVR 161 (398)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhccc-chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHH
Confidence 345667889999999999999988887665533 34555555 666699999999999999999999987544 345599
Q ss_pred HHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH-------HH
Q 005108 319 LLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLS-------MC 391 (714)
Q Consensus 319 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~-------~~ 391 (714)
++...|++++|+..++++.+..+... ......+..|...|+|++|++.+.++.+.......... ..
T Consensus 162 l~l~~g~~~~Al~~l~~~~~~~P~~~-------~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~ 234 (398)
T PRK10747 162 IQLARNENHAARHGVDKLLEVAPRHP-------EVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIG 234 (398)
T ss_pred HHHHCCCHHHHHHHHHHHHhcCCCCH-------HHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999987332221 12333455688889999999999999988765333222 11
Q ss_pred HHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHH
Q 005108 392 RVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVA 471 (714)
Q Consensus 392 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 471 (714)
+........+.+...++++...+..|++ ..+...++..+...|+.++|.+.++++++. +.+....
T Consensus 235 l~~~~~~~~~~~~l~~~w~~lp~~~~~~--------------~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~~l~ 299 (398)
T PRK10747 235 LMDQAMADQGSEGLKRWWKNQSRKTRHQ--------------VALQVAMAEHLIECDDHDTAQQIILDGLKR-QYDERLV 299 (398)
T ss_pred HHHHHHHhcCHHHHHHHHHhCCHHHhCC--------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCHHHH
Confidence 1222233344566666667766666666 778999999999999999999999999995 4455543
Q ss_pred HHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHH
Q 005108 472 VLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKAL 551 (714)
Q Consensus 472 ~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 551 (714)
..+ + ....++.+++++.+++.++.+|+++..+..+|.++...++|++|.++|+++++..|++ ..+
T Consensus 300 ~l~------------~--~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~-~~~ 364 (398)
T PRK10747 300 LLI------------P--RLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA-YDY 364 (398)
T ss_pred HHH------------h--hccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH-HHH
Confidence 322 3 3355999999999999999999999999999999999999999999999999999996 456
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhC
Q 005108 552 LRRAASNSKLEKWADAVRDFEVLRREL 578 (714)
Q Consensus 552 ~~la~~~~~~g~~~eA~~~~~~al~~~ 578 (714)
..++.++.++|+.++|.++|++++.+.
T Consensus 365 ~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 365 AWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 789999999999999999999998764
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.7e-19 Score=172.79 Aligned_cols=245 Identities=13% Similarity=0.014 Sum_probs=203.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Q 005108 244 ELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVRL 323 (714)
Q Consensus 244 ~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~ 323 (714)
....+|++|+..|.+.+|...++.+++..| .++.+..++.+|.+..+...|+..|.+.++..|.++..+...+.++..+
T Consensus 225 Wk~Q~gkCylrLgm~r~AekqlqssL~q~~-~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 225 WKQQMGKCYLRLGMPRRAEKQLQSSLTQFP-HPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHHHhcChhhhHHHHHHHhhcCC-chhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHH
Confidence 345789999999999999999999999886 5788999999999999999999999999999999999999999999988
Q ss_pred CCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH
Q 005108 324 GQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLE 403 (714)
Q Consensus 324 g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~ 403 (714)
+++++|+++|+.+ ++.+|.+. +...+++.-|+.-++.+
T Consensus 304 ~~~~~a~~lYk~v-----------------------------------------lk~~~~nv-EaiAcia~~yfY~~~PE 341 (478)
T KOG1129|consen 304 EQQEDALQLYKLV-----------------------------------------LKLHPINV-EAIACIAVGYFYDNNPE 341 (478)
T ss_pred HhHHHHHHHHHHH-----------------------------------------HhcCCccc-eeeeeeeeccccCCChH
Confidence 8888888777554 44444432 22334677788888888
Q ss_pred HHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCC---CCHHHHHHHHhHHHH
Q 005108 404 DAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDP---RNVEVAVLLNNVKLV 480 (714)
Q Consensus 404 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~l~~l~~~ 480 (714)
-|+.+|++++++.-.+ ...+.++|.+++..+++|-++..|++++.... ...++|+.+
T Consensus 342 ~AlryYRRiLqmG~~s--------------peLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNl------ 401 (478)
T KOG1129|consen 342 MALRYYRRILQMGAQS--------------PELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNL------ 401 (478)
T ss_pred HHHHHHHHHHHhcCCC--------------hHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhcc------
Confidence 8888888888888777 67788888888888888888888888886543 235566655
Q ss_pred HHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005108 481 ARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAAS 557 (714)
Q Consensus 481 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 557 (714)
|.+....|++.-|..+|+-++..++++.+++.+||.+-.+.|+.++|..+++.+-...|+-.+..++++.+
T Consensus 402 ------g~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~~~Nl~~~ 472 (478)
T KOG1129|consen 402 ------GFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEVTTNLQFM 472 (478)
T ss_pred ------ceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccccccccceeEE
Confidence 88888888999999999988888888889999999988899999999999988888888877777766544
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.84 E-value=8.4e-18 Score=181.54 Aligned_cols=332 Identities=16% Similarity=0.140 Sum_probs=263.1
Q ss_pred hhhhhcCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Q 005108 230 VNRNRGGICGGDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNY 309 (714)
Q Consensus 230 ~~~~~~~~~p~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 309 (714)
......+.+|.++.+|+.+|.+|-++|+.++|+.++-.|-.++|++...|..++....++|++++|+-+|.+||+.+|.+
T Consensus 161 i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n 240 (895)
T KOG2076|consen 161 ILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSN 240 (895)
T ss_pred HHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcc
Confidence 34444567899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCC-CCCHHH
Q 005108 310 WRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGA-DFSPQL 388 (714)
Q Consensus 310 ~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p-~~~~~~ 388 (714)
....+..+.+|.++|++..|+..|.++++..++..+...... ....+..+...++-+.|++.++.++.... .....-
T Consensus 241 ~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~--i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed 318 (895)
T KOG2076|consen 241 WELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDL--IRRVAHYFITHNERERAAKALEGALSKEKDEASLED 318 (895)
T ss_pred hHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHH--HHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccH
Confidence 999999999999999999999999999986655555433322 22335557777888999999999988432 112233
Q ss_pred HHHHHHHHHHcCCHHHHHHHhhcccc--CCCCCCCc---------------------hhhhh------------------
Q 005108 389 SMCRVEALLKLHQLEDAESSLSNIPK--IEPSTVSS---------------------SQTRF------------------ 427 (714)
Q Consensus 389 ~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~---------------------~~~~~------------------ 427 (714)
+..++.+++...+++.|+........ ..+++.+. ...+.
T Consensus 319 ~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ 398 (895)
T KOG2076|consen 319 LNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEA 398 (895)
T ss_pred HHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHH
Confidence 44589999999999999888766544 11110000 00000
Q ss_pred -------hh--hhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCC-HHHHHHHHhHHHHHHHHHHHhHHhhCcCHH
Q 005108 428 -------FG--MLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRN-VEVAVLLNNVKLVARARARGNDLFKSERFT 497 (714)
Q Consensus 428 -------~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~ 497 (714)
.+ .......++.++.+|...|++.+|+.+|..+....+.+ ..+|+.+ |.+|..+|.++
T Consensus 399 ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~------------a~c~~~l~e~e 466 (895)
T KOG2076|consen 399 LLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKL------------ARCYMELGEYE 466 (895)
T ss_pred HHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHH------------HHHHHHHhhHH
Confidence 00 11345678899999999999999999999998876644 3455544 99999999999
Q ss_pred HHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHhccHHHHH
Q 005108 498 EACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPN---------YTKALLRRAASNSKLEKWADAV 568 (714)
Q Consensus 498 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---------~~~~~~~la~~~~~~g~~~eA~ 568 (714)
+|+++|++++...|++.++...|+.++.++|+.++|++.++....-++. .......+..++...|+.++=+
T Consensus 467 ~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi 546 (895)
T KOG2076|consen 467 EAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFI 546 (895)
T ss_pred HHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHH
Confidence 9999999999999999999999999999999999999999987633322 2356678889999999998855
Q ss_pred HHHHHHH
Q 005108 569 RDFEVLR 575 (714)
Q Consensus 569 ~~~~~al 575 (714)
..-..++
T Consensus 547 ~t~~~Lv 553 (895)
T KOG2076|consen 547 NTASTLV 553 (895)
T ss_pred HHHHHHH
Confidence 5444444
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.6e-17 Score=172.45 Aligned_cols=306 Identities=19% Similarity=0.117 Sum_probs=188.6
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 005108 241 DAEELKRMGNELYRKGCFGEALSMYDKAISLAP---RNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLG 317 (714)
Q Consensus 241 ~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la 317 (714)
+-+.|+..|..+-..|-.-.+..+....|.+.- +.-..|..-+..+.+.+-++-|+..|..+++.+|.....|...+
T Consensus 478 ~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~ 557 (913)
T KOG0495|consen 478 NRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAA 557 (913)
T ss_pred cHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHH
Confidence 456666666666666666666666666655432 23445666666666666666666666666666666666666666
Q ss_pred HHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 005108 318 SLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALL 397 (714)
Q Consensus 318 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~ 397 (714)
..-...|..+.-...|++++..-...... ++-.+..+...|+...|..++..+++.+|. +.++|+....+..
T Consensus 558 ~~ek~hgt~Esl~Allqkav~~~pkae~l-------wlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~ 629 (913)
T KOG0495|consen 558 MFEKSHGTRESLEALLQKAVEQCPKAEIL-------WLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEF 629 (913)
T ss_pred HHHHhcCcHHHHHHHHHHHHHhCCcchhH-------HHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhh
Confidence 66666666666666666666533322211 222233344456666666666666666665 4555655566666
Q ss_pred HcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhH
Q 005108 398 KLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNV 477 (714)
Q Consensus 398 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l 477 (714)
...+++.|..+|.++....+. ..+|+.-+.+...+++.++|+.+++++++..|+....|..+
T Consensus 630 en~e~eraR~llakar~~sgT---------------eRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lml--- 691 (913)
T KOG0495|consen 630 ENDELERARDLLAKARSISGT---------------ERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLML--- 691 (913)
T ss_pred ccccHHHHHHHHHHHhccCCc---------------chhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHH---
Confidence 666666666666666665555 34566666666666666666666666666666666666555
Q ss_pred HHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005108 478 KLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAAS 557 (714)
Q Consensus 478 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 557 (714)
|+++.+.++.+.|.+.|...++..|+.+.+|..++.+-.+.|+.-+|...++++.-.+|++...|+.....
T Consensus 692 ---------GQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ 762 (913)
T KOG0495|consen 692 ---------GQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRM 762 (913)
T ss_pred ---------hHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHH
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHhccHHHHHHHHHHHHHhCCCC
Q 005108 558 NSKLEKWADAVRDFEVLRRELPDD 581 (714)
Q Consensus 558 ~~~~g~~~eA~~~~~~al~~~p~~ 581 (714)
-.+.|+.+.|...+.+|++..|++
T Consensus 763 ElR~gn~~~a~~lmakALQecp~s 786 (913)
T KOG0495|consen 763 ELRAGNKEQAELLMAKALQECPSS 786 (913)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCcc
Confidence 666666666666666666554443
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.2e-18 Score=194.85 Aligned_cols=239 Identities=12% Similarity=0.001 Sum_probs=202.5
Q ss_pred HHHHHHHHHHHC---CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHH
Q 005108 278 FRSNRAAALTGL---GRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKH 354 (714)
Q Consensus 278 ~~~~la~~~~~~---g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~ 354 (714)
.++.+|..++.. +.+++|+..|+++++++|++..+|..+|.+|...+....
T Consensus 260 ~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~-------------------------- 313 (553)
T PRK12370 260 MVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGI-------------------------- 313 (553)
T ss_pred HHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCC--------------------------
Confidence 344556544433 357899999999999999999999999998875432110
Q ss_pred HHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhH
Q 005108 355 LSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEA 434 (714)
Q Consensus 355 ~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 434 (714)
....+++++|+..++++++++|++ ...+..+|.++...|++++|+..|+++++++|++ +
T Consensus 314 ------~~~~~~~~~A~~~~~~Al~ldP~~-~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~--------------~ 372 (553)
T PRK12370 314 ------FDKQNAMIKAKEHAIKATELDHNN-PQALGLLGLINTIHSEYIVGSLLFKQANLLSPIS--------------A 372 (553)
T ss_pred ------cccchHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC--------------H
Confidence 112356788999999999999985 5667779999999999999999999999999999 8
Q ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccC-CCC
Q 005108 435 YTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFD-PSN 513 (714)
Q Consensus 435 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~ 513 (714)
.+++.+|.++...|++++|+..++++++++|.+...+..+ +.+++..|++++|+..++++++.. |++
T Consensus 373 ~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~------------~~~~~~~g~~eeA~~~~~~~l~~~~p~~ 440 (553)
T PRK12370 373 DIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITK------------LWITYYHTGIDDAIRLGDELRSQHLQDN 440 (553)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHH------------HHHHHhccCHHHHHHHHHHHHHhccccC
Confidence 8899999999999999999999999999999988765443 556777899999999999999875 788
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Q 005108 514 SVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRE 577 (714)
Q Consensus 514 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 577 (714)
+.++.++|.+|..+|++++|+..+++++...|+...++..++..|..+|+ +|...++++++.
T Consensus 441 ~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~l~~ll~~ 502 (553)
T PRK12370 441 PILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSE--RALPTIREFLES 502 (553)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH--HHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998884 777777776653
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=9.3e-17 Score=187.73 Aligned_cols=312 Identities=10% Similarity=0.014 Sum_probs=197.4
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-cHHHHHHHH
Q 005108 240 GDAEELKRMGNELYRKGCFGEALSMYDKAISLAP-RNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPN-YWRAHQRLG 317 (714)
Q Consensus 240 ~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~la 317 (714)
.+...|..+-..+.+.|++++|.++|+++.+... .+...|..+..+|.+.|++++|.+.|+++.+.... +...|..+.
T Consensus 435 pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI 514 (1060)
T PLN03218 435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALI 514 (1060)
T ss_pred CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 4555666666666666666666666666655432 24455556666666666666666666666554321 455566666
Q ss_pred HHHHHcCCHHHHHHHHHhhcC---CCChHHHHHHHHH----------------------------HHHHHHhHHHHHcCC
Q 005108 318 SLLVRLGQVENARRHLCLSGQ---QADPTEVHRLQVV----------------------------EKHLSKCTDARKVGD 366 (714)
Q Consensus 318 ~~~~~~g~~~~A~~~~~~al~---~~~~~~~~~l~~~----------------------------~~~~~~a~~~~~~g~ 366 (714)
..|.+.|++++|++.|+++.. .++...+..+... ..+..+...|.+.|+
T Consensus 515 ~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ 594 (1060)
T PLN03218 515 DGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQ 594 (1060)
T ss_pred HHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCC
Confidence 666666666666666655543 1121111111110 112223334556666
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHH
Q 005108 367 WKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMA 446 (714)
Q Consensus 367 ~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 446 (714)
+++|++.|+++.+.+.......|..+...|.+.|++++|+++|+++.+..-.. +...|..+...|.+
T Consensus 595 ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~P-------------D~~TynsLI~a~~k 661 (1060)
T PLN03218 595 VDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKP-------------DEVFFSALVDVAGH 661 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-------------CHHHHHHHHHHHHh
Confidence 66666666666666554455566666666666666666666666665543221 14456666677777
Q ss_pred hCcHHHHHHHHHHHhccCC-CCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhcc--CCCCHHHHHHHHHH
Q 005108 447 LGRFENAVTAAEKAGQIDP-RNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRF--DPSNSVLYCNRAAC 523 (714)
Q Consensus 447 ~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~ 523 (714)
.|++++|+++++++.+... -+...+.. +...|.+.|++++|+++|+++.+. .| +...|..+...
T Consensus 662 ~G~~eeA~~l~~eM~k~G~~pd~~tyns------------LI~ay~k~G~~eeA~~lf~eM~~~g~~P-dvvtyN~LI~g 728 (1060)
T PLN03218 662 AGDLDKAFEILQDARKQGIKLGTVSYSS------------LMGACSNAKNWKKALELYEDIKSIKLRP-TVSTMNALITA 728 (1060)
T ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHH------------HHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHH
Confidence 7777777777777665432 22333333 377889999999999999988653 34 67889999999
Q ss_pred HHHhCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Q 005108 524 WFKLGQWERSVEDSNQALLI--QPNYTKALLRRAASNSKLEKWADAVRDFEVLRREL 578 (714)
Q Consensus 524 ~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 578 (714)
|.+.|++++|++.|+++.+. .|+ ...|..+...+.+.|++++|.++|+++++..
T Consensus 729 y~k~G~~eeAlelf~eM~~~Gi~Pd-~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~G 784 (1060)
T PLN03218 729 LCEGNQLPKALEVLSEMKRLGLCPN-TITYSILLVASERKDDADVGLDLLSQAKEDG 784 (1060)
T ss_pred HHHCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 99999999999999988763 455 5677778889999999999999999998754
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=9.2e-17 Score=187.77 Aligned_cols=315 Identities=11% Similarity=0.037 Sum_probs=219.7
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CcHHHHHHHH
Q 005108 239 GGDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDP-NYWRAHQRLG 317 (714)
Q Consensus 239 p~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~la 317 (714)
+.+...+..+...+.+.|.+++|+.+|+.+.. | +...|..+..++...|++++|.+.|+++.+... .+...|..+.
T Consensus 403 ~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~--p-d~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI 479 (1060)
T PLN03218 403 DMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN--P-TLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLI 479 (1060)
T ss_pred CchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC--C-CHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 34555566677788899999999999988764 4 678899999999999999999999999988653 3578899999
Q ss_pred HHHHHcCCHHHHHHHHHhhcC---CCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 005108 318 SLLVRLGQVENARRHLCLSGQ---QADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVE 394 (714)
Q Consensus 318 ~~~~~~g~~~~A~~~~~~al~---~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~ 394 (714)
..|.+.|++++|.++|+++.+ .++...+..+. ..|.+.|++++|++.|+++...+...+...|..+..
T Consensus 480 ~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI---------~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~ 550 (1060)
T PLN03218 480 STCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALI---------DGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALIS 550 (1060)
T ss_pred HHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHH---------HHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 999999999999999999986 22333332222 125566667777777766666655445566666666
Q ss_pred HHHHcCCHHHHHHHhhccccC----CCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCC-CCHH
Q 005108 395 ALLKLHQLEDAESSLSNIPKI----EPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDP-RNVE 469 (714)
Q Consensus 395 ~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~ 469 (714)
.|.+.|++++|.++|.++... .|+ ...|..+...|.+.|++++|+++|+++.+.+. .+..
T Consensus 551 a~~k~G~~deA~~lf~eM~~~~~gi~PD---------------~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~ 615 (1060)
T PLN03218 551 ACGQSGAVDRAFDVLAEMKAETHPIDPD---------------HITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPE 615 (1060)
T ss_pred HHHHCCCHHHHHHHHHHHHHhcCCCCCc---------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChH
Confidence 666666666666666666432 222 23344444444444444444444444443321 1111
Q ss_pred HHHHHHhH-------H----------------HHHHHHHHHhHHhhCcCHHHHHHHHHHhhccC-CCCHHHHHHHHHHHH
Q 005108 470 VAVLLNNV-------K----------------LVARARARGNDLFKSERFTEACQAYGEGLRFD-PSNSVLYCNRAACWF 525 (714)
Q Consensus 470 ~~~~l~~l-------~----------------~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~ 525 (714)
.|..+... . ....+..+...|.+.|++++|+++++++.+.. +.+...|..+..+|.
T Consensus 616 tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~ 695 (1060)
T PLN03218 616 VYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACS 695 (1060)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 11111000 0 00012234677888999999999999988753 346788999999999
Q ss_pred HhCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCC
Q 005108 526 KLGQWERSVEDSNQALL--IQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRE--LPDD 581 (714)
Q Consensus 526 ~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--~p~~ 581 (714)
+.|++++|++.|+++.+ +.|+ ...|..+...|.+.|++++|+++|+++.+. .|+.
T Consensus 696 k~G~~eeA~~lf~eM~~~g~~Pd-vvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~ 754 (1060)
T PLN03218 696 NAKNWKKALELYEDIKSIKLRPT-VSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNT 754 (1060)
T ss_pred hCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCH
Confidence 99999999999999876 3454 678999999999999999999999988764 4543
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1e-17 Score=161.00 Aligned_cols=283 Identities=19% Similarity=0.118 Sum_probs=233.5
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhH
Q 005108 280 SNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCT 359 (714)
Q Consensus 280 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~ 359 (714)
+..|.-+.-..+.++|++.|..+++.+|...+++..||.+|...|..+.|+..-+..+..++.... .++.....++.
T Consensus 39 Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~---qr~lAl~qL~~ 115 (389)
T COG2956 39 YVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFE---QRLLALQQLGR 115 (389)
T ss_pred HHhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchH---HHHHHHHHHHH
Confidence 344555666677888888888888888888888888888888888888888877777665554433 34455667788
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHH
Q 005108 360 DARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFV 439 (714)
Q Consensus 360 ~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~ 439 (714)
.|+..|-++.|...|...... +++.......+..+|....+|++|++..++..++.+... .+..+..|..
T Consensus 116 Dym~aGl~DRAE~~f~~L~de-~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~---------~~eIAqfyCE 185 (389)
T COG2956 116 DYMAAGLLDRAEDIFNQLVDE-GEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTY---------RVEIAQFYCE 185 (389)
T ss_pred HHHHhhhhhHHHHHHHHHhcc-hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccc---------hhHHHHHHHH
Confidence 888888888888888776653 455667777799999999999999999999999988862 2234677889
Q ss_pred HHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCC-HHHHH
Q 005108 440 RAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSN-SVLYC 518 (714)
Q Consensus 440 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~ 518 (714)
++..+....+++.|+..+.++++.+|+...+-..+ |.++...|+|+.|++.++.+++.+|+. +++..
T Consensus 186 LAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~l------------G~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~ 253 (389)
T COG2956 186 LAQQALASSDVDRARELLKKALQADKKCVRASIIL------------GRVELAKGDYQKAVEALERVLEQNPEYLSEVLE 253 (389)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhh------------hHHHHhccchHHHHHHHHHHHHhChHHHHHHHH
Confidence 99999999999999999999999999999888877 999999999999999999999999987 67888
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005108 519 NRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAESL 588 (714)
Q Consensus 519 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~L 588 (714)
.|..||.++|+.++.+..+.++.+..++ ..+...++..-....-.+.|..++.+-++..|+-......+
T Consensus 254 ~L~~~Y~~lg~~~~~~~fL~~~~~~~~g-~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~ 322 (389)
T COG2956 254 MLYECYAQLGKPAEGLNFLRRAMETNTG-ADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLM 322 (389)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHccCC-ccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHH
Confidence 8999999999999999999999998877 45667777887788888999999999999998866555443
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.9e-18 Score=175.11 Aligned_cols=122 Identities=19% Similarity=0.190 Sum_probs=86.5
Q ss_pred CCHHHHHHHHHHHHHhC---CC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 005108 256 GCFGEALSMYDKAISLA---PR-NAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVRLGQVENARR 331 (714)
Q Consensus 256 g~~~~Al~~~~~al~~~---p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~ 331 (714)
+..+.++..+.+++... |. .+..|+.+|.+|..+|++++|+..|+++++++|++..+|+.+|.++...|++++|+.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 45677888888888643 33 367788899999999999999999999999999888888888888887777777766
Q ss_pred HHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHhhc
Q 005108 332 HLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSN 411 (714)
Q Consensus 332 ~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 411 (714)
.| +++++++|++ ...+.++|.++...|++++|++.|++
T Consensus 120 ~~-----------------------------------------~~Al~l~P~~-~~a~~~lg~~l~~~g~~~eA~~~~~~ 157 (296)
T PRK11189 120 AF-----------------------------------------DSVLELDPTY-NYAYLNRGIALYYGGRYELAQDDLLA 157 (296)
T ss_pred HH-----------------------------------------HHHHHhCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 55 3444555553 23344466666666666666666666
Q ss_pred cccCCCCC
Q 005108 412 IPKIEPST 419 (714)
Q Consensus 412 al~~~p~~ 419 (714)
+++++|++
T Consensus 158 al~~~P~~ 165 (296)
T PRK11189 158 FYQDDPND 165 (296)
T ss_pred HHHhCCCC
Confidence 66666655
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.81 E-value=9.1e-20 Score=186.79 Aligned_cols=251 Identities=18% Similarity=0.144 Sum_probs=122.1
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHh-c-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHH
Q 005108 280 SNRAAALTGLGRIGEAVKECEEAVR-L-DPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSK 357 (714)
Q Consensus 280 ~~la~~~~~~g~~~~A~~~~~~al~-~-~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~ 357 (714)
+.+|.+++..|++++|++.+++.+. . .|++...|..+|.+...++++++|+..|++++
T Consensus 12 l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~-------------------- 71 (280)
T PF13429_consen 12 LRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLL-------------------- 71 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--------------------
Confidence 4668888888888888888866544 3 47778888888888888888888877776654
Q ss_pred hHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHH
Q 005108 358 CTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTF 437 (714)
Q Consensus 358 a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~ 437 (714)
..++. .+..+..++.+ ...+++++|+.+++++.+..++ ...+
T Consensus 72 ---------------------~~~~~-~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~---------------~~~l 113 (280)
T PF13429_consen 72 ---------------------ASDKA-NPQDYERLIQL-LQDGDPEEALKLAEKAYERDGD---------------PRYL 113 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ---------------------ccccc-ccccccccccc-cccccccccccccccccccccc---------------cchh
Confidence 33222 22233335555 6889999999999998877654 3456
Q ss_pred HHHHHHHHHhCcHHHHHHHHHHHhccC--CCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHH
Q 005108 438 FVRAQIEMALGRFENAVTAAEKAGQID--PRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSV 515 (714)
Q Consensus 438 ~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~ 515 (714)
.....++...++++++...++++.... +.++.+|..+ |.++.+.|++++|+.+|+++++.+|++..
T Consensus 114 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~------------a~~~~~~G~~~~A~~~~~~al~~~P~~~~ 181 (280)
T PF13429_consen 114 LSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLAL------------AEIYEQLGDPDKALRDYRKALELDPDDPD 181 (280)
T ss_dssp ----H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHH------------HHHHHHCCHHHHHHHHHHHHHHH-TT-HH
T ss_pred hHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Confidence 677788999999999999999977644 5667777665 99999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 005108 516 LYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAESLFHAQVSL 595 (714)
Q Consensus 516 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~L~~~~~~l 595 (714)
++..++.++...|+++++.+.++...+..|+++..+..+|.+|..+|++++|+.+|+++++.+|+|+.+...+..+....
T Consensus 182 ~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~ 261 (280)
T PF13429_consen 182 ARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQA 261 (280)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999999999999998888888889999999999999999999999999999999999999999988877
Q ss_pred hhhcc
Q 005108 596 KKSRG 600 (714)
Q Consensus 596 ~~~~~ 600 (714)
++.+.
T Consensus 262 g~~~~ 266 (280)
T PF13429_consen 262 GRKDE 266 (280)
T ss_dssp -----
T ss_pred ccccc
Confidence 76543
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.81 E-value=5e-18 Score=174.47 Aligned_cols=256 Identities=16% Similarity=0.154 Sum_probs=218.3
Q ss_pred CCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHH
Q 005108 236 GICGGDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQR 315 (714)
Q Consensus 236 ~~~p~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~ 315 (714)
..+|-+...+-...-+++..|+..+=..+-.+.++..|+.+..|+..|..|...|++.+|.++|.++..+||.+..+|..
T Consensus 272 e~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~ 351 (611)
T KOG1173|consen 272 EKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLA 351 (611)
T ss_pred hhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHH
Confidence 35666666665555599999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHH
Q 005108 316 LGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADF-SPQLSMCRVE 394 (714)
Q Consensus 316 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~-~~~~~~~la~ 394 (714)
+|..+...+..++|+..|..|. ++-+.. .+.+| +|.
T Consensus 352 fghsfa~e~EhdQAmaaY~tAa-----------------------------------------rl~~G~hlP~LY--lgm 388 (611)
T KOG1173|consen 352 FGHSFAGEGEHDQAMAAYFTAA-----------------------------------------RLMPGCHLPSLY--LGM 388 (611)
T ss_pred HhHHhhhcchHHHHHHHHHHHH-----------------------------------------HhccCCcchHHH--HHH
Confidence 9999999999998888875553 333322 23332 799
Q ss_pred HHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhcc----CCCCHHH
Q 005108 395 ALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQI----DPRNVEV 470 (714)
Q Consensus 395 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~ 470 (714)
-|.+.+.++-|.++|.+++.+.|.+ +.++..+|.+.+..+.|.+|+.+|++++.. .+... .
T Consensus 389 ey~~t~n~kLAe~Ff~~A~ai~P~D--------------plv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~-~ 453 (611)
T KOG1173|consen 389 EYMRTNNLKLAEKFFKQALAIAPSD--------------PLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKI-F 453 (611)
T ss_pred HHHHhccHHHHHHHHHHHHhcCCCc--------------chhhhhhhheeehHhhhHHHHHHHHHHHHHhhhcccccc-c
Confidence 9999999999999999999999999 788999999999999999999999999832 22222 2
Q ss_pred HHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH
Q 005108 471 AVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKA 550 (714)
Q Consensus 471 ~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 550 (714)
|.-+ +.++|.++.+++++++|+.+|+++|.+.|.++.++..+|.+|..+|+++.|++.|.+++.++|++.-+
T Consensus 454 w~p~--------~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~ 525 (611)
T KOG1173|consen 454 WEPT--------LNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFI 525 (611)
T ss_pred hhHH--------HHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHH
Confidence 3222 23569999999999999999999999999999999999999999999999999999999999999755
Q ss_pred HHHHHHH
Q 005108 551 LLRRAAS 557 (714)
Q Consensus 551 ~~~la~~ 557 (714)
--.|+.+
T Consensus 526 ~~lL~~a 532 (611)
T KOG1173|consen 526 SELLKLA 532 (611)
T ss_pred HHHHHHH
Confidence 5555533
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.7e-17 Score=188.95 Aligned_cols=296 Identities=13% Similarity=-0.003 Sum_probs=247.0
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHH
Q 005108 240 GDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLD-PNYWRAHQRLGS 318 (714)
Q Consensus 240 ~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~la~ 318 (714)
.|...+..+...|.+.|++++|.+.|+++. +.+...|..+...|.+.|++++|++.|+++.+.. .-+...|..+..
T Consensus 257 ~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~---~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~ 333 (697)
T PLN03081 257 GDTFVSCALIDMYSKCGDIEDARCVFDGMP---EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIR 333 (697)
T ss_pred ccceeHHHHHHHHHHCCCHHHHHHHHHhCC---CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 356677888999999999999999999874 4578899999999999999999999999997643 224678999999
Q ss_pred HHHHcCCHHHHHHHHHhhcCCC-ChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 005108 319 LLVRLGQVENARRHLCLSGQQA-DPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALL 397 (714)
Q Consensus 319 ~~~~~g~~~~A~~~~~~al~~~-~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~ 397 (714)
.+.+.|++++|.+.+..+++.. .++. ..+..+...|.+.|++++|.+.|+++.+. +...|..+...|.
T Consensus 334 a~~~~g~~~~a~~i~~~m~~~g~~~d~-------~~~~~Li~~y~k~G~~~~A~~vf~~m~~~----d~~t~n~lI~~y~ 402 (697)
T PLN03081 334 IFSRLALLEHAKQAHAGLIRTGFPLDI-------VANTALVDLYSKWGRMEDARNVFDRMPRK----NLISWNALIAGYG 402 (697)
T ss_pred HHHhccchHHHHHHHHHHHHhCCCCCe-------eehHHHHHHHHHCCCHHHHHHHHHhCCCC----CeeeHHHHHHHHH
Confidence 9999999999999999887732 2221 22344556688999999999999987642 3456888999999
Q ss_pred HcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhcc---CCCCHHHHHHH
Q 005108 398 KLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQI---DPRNVEVAVLL 474 (714)
Q Consensus 398 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l 474 (714)
+.|+.++|++.|+++.+..... +..++..+...+...|+.++|.++|+.+.+. .|+. ..+..+
T Consensus 403 ~~G~~~~A~~lf~~M~~~g~~P-------------d~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~-~~y~~l 468 (697)
T PLN03081 403 NHGRGTKAVEMFERMIAEGVAP-------------NHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRA-MHYACM 468 (697)
T ss_pred HcCCHHHHHHHHHHHHHhCCCC-------------CHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCc-cchHhH
Confidence 9999999999999988754332 2567888899999999999999999999753 3432 233333
Q ss_pred HhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005108 475 NNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRR 554 (714)
Q Consensus 475 ~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 554 (714)
...|.+.|++++|.+.++++ ...| +...|..+...+...|+++.|...+++++++.|++...|..+
T Consensus 469 ------------i~~l~r~G~~~eA~~~~~~~-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L 534 (697)
T PLN03081 469 ------------IELLGREGLLDEAYAMIRRA-PFKP-TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVL 534 (697)
T ss_pred ------------HHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHH
Confidence 78899999999999999875 3344 567899999999999999999999999999999999999999
Q ss_pred HHHHHHhccHHHHHHHHHHHHHh
Q 005108 555 AASNSKLEKWADAVRDFEVLRRE 577 (714)
Q Consensus 555 a~~~~~~g~~~eA~~~~~~al~~ 577 (714)
..+|.+.|++++|.+.++++.+.
T Consensus 535 ~~~y~~~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 535 LNLYNSSGRQAEAAKVVETLKRK 557 (697)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHc
Confidence 99999999999999999998765
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.9e-17 Score=178.38 Aligned_cols=278 Identities=12% Similarity=0.050 Sum_probs=225.9
Q ss_pred CCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHH
Q 005108 236 GICGGDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNA-AFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQ 314 (714)
Q Consensus 236 ~~~p~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 314 (714)
...|+....+...|..+..+|++++|..+|.++.+..|++. .+....+.++...|++++|+..++++++..|++..++.
T Consensus 112 ~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ 191 (409)
T TIGR00540 112 DHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLK 191 (409)
T ss_pred hcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 35666777888899999999999999999999999999885 56666799999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHhhcCC--CChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCC---CCHHHH
Q 005108 315 RLGSLLVRLGQVENARRHLCLSGQQ--ADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGAD---FSPQLS 389 (714)
Q Consensus 315 ~la~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~---~~~~~~ 389 (714)
.++.++...|++++|++.+.+..+. .++.....+.. ..+ ......+..+++.+.+.++....|. ..+.++
T Consensus 192 ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~-~a~----~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~ 266 (409)
T TIGR00540 192 LAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQ-KAE----IGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALK 266 (409)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHH-HHH----HHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHH
Confidence 9999999999999999999998873 33333222211 111 1112334445566778888888774 368888
Q ss_pred HHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCH-
Q 005108 390 MCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNV- 468 (714)
Q Consensus 390 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~- 468 (714)
..++..+...|++++|++.++++++..|++.. ..............++.+++++.++++++..|+++
T Consensus 267 ~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~------------~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~ 334 (409)
T TIGR00540 267 IALAEHLIDCDDHDSAQEIIFDGLKKLGDDRA------------ISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPK 334 (409)
T ss_pred HHHHHHHHHCCChHHHHHHHHHHHhhCCCccc------------chhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChh
Confidence 88999999999999999999999999999821 10113333444556889999999999999999999
Q ss_pred -HHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHH--HhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Q 005108 469 -EVAVLLNNVKLVARARARGNDLFKSERFTEACQAYG--EGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLI 543 (714)
Q Consensus 469 -~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~--~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 543 (714)
.....+ |.++++.|+|++|.++|+ .+++..|++.. +..+|.++.++|+.++|.++|++++..
T Consensus 335 ~~ll~sL------------g~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 335 CCINRAL------------GQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred HHHHHHH------------HHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 655555 999999999999999999 67888886655 669999999999999999999998763
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.1e-17 Score=169.48 Aligned_cols=257 Identities=15% Similarity=0.084 Sum_probs=176.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 005108 314 QRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRV 393 (714)
Q Consensus 314 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la 393 (714)
-.+|...++..++..|+++|.+++... ..........-.++.++......+.-++|++.-....... .........+|
T Consensus 228 k~lgnaaykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~-klIak~~~r~g 305 (539)
T KOG0548|consen 228 KELGNAAYKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADY-KLIAKALARLG 305 (539)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHH-HHHHHHHHHhh
Confidence 445667777778888888888887644 3333333333344444444444455444444333222110 00122222355
Q ss_pred HHHHHcCCHHHHHHHhhccccCCCCCCCchhhhh------------hhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHh
Q 005108 394 EALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRF------------FGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAG 461 (714)
Q Consensus 394 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~------------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 461 (714)
..|...++++.|+.+|.+++............+. ......+.-....|..++..|+|.+|+..|.+++
T Consensus 306 ~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAI 385 (539)
T KOG0548|consen 306 NAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAI 385 (539)
T ss_pred hhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 5666667777777777776654433100000000 0000114445667999999999999999999999
Q ss_pred ccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 005108 462 QIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQAL 541 (714)
Q Consensus 462 ~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 541 (714)
+.+|++...+... |.+|.+++.+..|+...+++++++|+....|...|.++..+.+|++|++.|++++
T Consensus 386 kr~P~Da~lYsNR------------Aac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eal 453 (539)
T KOG0548|consen 386 KRDPEDARLYSNR------------AACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEAL 453 (539)
T ss_pred hcCCchhHHHHHH------------HHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999988754 9999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005108 542 LIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAESL 588 (714)
Q Consensus 542 ~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~L 588 (714)
+++|++.++.-.+..|+..+.......+.++++. .++++...|
T Consensus 454 e~dp~~~e~~~~~~rc~~a~~~~~~~ee~~~r~~----~dpev~~il 496 (539)
T KOG0548|consen 454 ELDPSNAEAIDGYRRCVEAQRGDETPEETKRRAM----ADPEVQAIL 496 (539)
T ss_pred hcCchhHHHHHHHHHHHHHhhcCCCHHHHHHhhc----cCHHHHHHH
Confidence 9999999999999999887655555555555532 455555544
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.7e-17 Score=163.72 Aligned_cols=296 Identities=15% Similarity=0.081 Sum_probs=253.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHCC--CHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 005108 244 ELKRMGNELYRKGCFGEALSMYDKAISLAPRN-AAFRSNRAAALTGLG--RIGEAVKECEEAVRLDPNYWRAHQRLGSLL 320 (714)
Q Consensus 244 ~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~-~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 320 (714)
.-...+-.|+++|+++.|++.++-.-+.+... ..+-.++..+++.+| ++.+|..+.+.++.++..++.++.+.|.+.
T Consensus 421 lei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~ 500 (840)
T KOG2003|consen 421 LEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIA 500 (840)
T ss_pred hhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCcee
Confidence 33556778999999999999987665555433 345566776666644 789999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 005108 321 VRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLH 400 (714)
Q Consensus 321 ~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g 400 (714)
+..|++++|.+.|.+++.... ...+.+++.+..+..+|+.++|+++|-+.-.+--+ +.+++..++.+|..+.
T Consensus 501 f~ngd~dka~~~ykeal~nda-------sc~ealfniglt~e~~~~ldeald~f~klh~il~n-n~evl~qianiye~le 572 (840)
T KOG2003|consen 501 FANGDLDKAAEFYKEALNNDA-------SCTEALFNIGLTAEALGNLDEALDCFLKLHAILLN-NAEVLVQIANIYELLE 572 (840)
T ss_pred eecCcHHHHHHHHHHHHcCch-------HHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHhh
Confidence 999999999999999985322 23467888899999999999999999887665443 5667777999999999
Q ss_pred CHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHH
Q 005108 401 QLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLV 480 (714)
Q Consensus 401 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~ 480 (714)
+..+|++++.++..+-|++ ..++..++.+|-+.|+-.+|..++-......|.+.+....+
T Consensus 573 d~aqaie~~~q~~slip~d--------------p~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl------ 632 (840)
T KOG2003|consen 573 DPAQAIELLMQANSLIPND--------------PAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWL------ 632 (840)
T ss_pred CHHHHHHHHHHhcccCCCC--------------HHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHH------
Confidence 9999999999999999998 78999999999999999999999999999999998877665
Q ss_pred HHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005108 481 ARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSK 560 (714)
Q Consensus 481 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 560 (714)
|..|....-+++|+.+|+++--+.|+.......++.|+.+.|+|++|.+.|+..-+..|.+.+.+..|..+.-.
T Consensus 633 ------~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~d 706 (840)
T KOG2003|consen 633 ------AAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGD 706 (840)
T ss_pred ------HHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhcc
Confidence 88899999999999999999999999999999999999999999999999999999999999999888888877
Q ss_pred hccHHHHHHHHHHH
Q 005108 561 LEKWADAVRDFEVL 574 (714)
Q Consensus 561 ~g~~~eA~~~~~~a 574 (714)
+|- .+|.++-+++
T Consensus 707 lgl-~d~key~~kl 719 (840)
T KOG2003|consen 707 LGL-KDAKEYADKL 719 (840)
T ss_pred ccc-hhHHHHHHHH
Confidence 764 3344444433
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.6e-18 Score=179.00 Aligned_cols=257 Identities=20% Similarity=0.196 Sum_probs=188.9
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhH
Q 005108 280 SNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCT 359 (714)
Q Consensus 280 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~ 359 (714)
+..|..+++.|+..+|.-.|+.+++.+|.+.++|..||.+....++-..|+..++++++. +|.+. +.++.++.
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~L-dP~Nl------eaLmaLAV 361 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLEL-DPTNL------EALMALAV 361 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhc-CCccH------HHHHHHHH
Confidence 578999999999999999999999999999999999999999999888888887666542 22211 23344444
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHH
Q 005108 360 DARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFV 439 (714)
Q Consensus 360 ~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~ 439 (714)
.|...|.-.+|+..+++-|...|.+. +. .... ....... ...+...
T Consensus 362 SytNeg~q~~Al~~L~~Wi~~~p~y~---~l-------~~a~-----------~~~~~~~--------~~s~~~~----- 407 (579)
T KOG1125|consen 362 SYTNEGLQNQALKMLDKWIRNKPKYV---HL-------VSAG-----------ENEDFEN--------TKSFLDS----- 407 (579)
T ss_pred HHhhhhhHHHHHHHHHHHHHhCccch---hc-------cccC-----------ccccccC--------CcCCCCH-----
Confidence 45555555555555555555544311 00 0000 0000000 0000001
Q ss_pred HHHHHHHhCcHHHHHHHHHHHhccCC--CCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHH
Q 005108 440 RAQIEMALGRFENAVTAAEKAGQIDP--RNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLY 517 (714)
Q Consensus 440 la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 517 (714)
..+..-.++|-.+....| .++++...| |.+|...|+|++|+++|+.||...|+|..+|
T Consensus 408 --------~~l~~i~~~fLeaa~~~~~~~DpdvQ~~L------------GVLy~ls~efdraiDcf~~AL~v~Pnd~~lW 467 (579)
T KOG1125|consen 408 --------SHLAHIQELFLEAARQLPTKIDPDVQSGL------------GVLYNLSGEFDRAVDCFEAALQVKPNDYLLW 467 (579)
T ss_pred --------HHHHHHHHHHHHHHHhCCCCCChhHHhhh------------HHHHhcchHHHHHHHHHHHHHhcCCchHHHH
Confidence 112233455556666666 677887766 9999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC----------CHHHHHH
Q 005108 518 CNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPD----------DNEIAES 587 (714)
Q Consensus 518 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~----------~~~~~~~ 587 (714)
+.||..+..-.+.++|+..|++|+++.|.++.++++||.+++.+|.|+||+++|-.||.+.+. +..++..
T Consensus 468 NRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~t 547 (579)
T KOG1125|consen 468 NRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQT 547 (579)
T ss_pred HHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999998765 1357777
Q ss_pred HHHHHHHhhh
Q 005108 588 LFHAQVSLKK 597 (714)
Q Consensus 588 L~~~~~~l~~ 597 (714)
|+.+....+.
T Consensus 548 LR~als~~~~ 557 (579)
T KOG1125|consen 548 LRLALSAMNR 557 (579)
T ss_pred HHHHHHHcCC
Confidence 7765555443
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.4e-17 Score=170.87 Aligned_cols=209 Identities=14% Similarity=0.040 Sum_probs=159.6
Q ss_pred HHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHH
Q 005108 356 SKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAY 435 (714)
Q Consensus 356 ~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~ 435 (714)
.++..+...|++++|+..|+++++.+|+. ...+..+|.++...|++++|+..|+++++++|++ ..
T Consensus 69 ~~g~~~~~~g~~~~A~~~~~~Al~l~P~~-~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~--------------~~ 133 (296)
T PRK11189 69 ERGVLYDSLGLRALARNDFSQALALRPDM-ADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTY--------------NY 133 (296)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC--------------HH
Confidence 33334444455555555567778888874 6777889999999999999999999999999998 88
Q ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHH
Q 005108 436 TFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSV 515 (714)
Q Consensus 436 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~ 515 (714)
+|..+|.++...|++++|++.|+++++++|+++.... + .......+++++|+..|++++...+.+.
T Consensus 134 a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~-~------------~~l~~~~~~~~~A~~~l~~~~~~~~~~~- 199 (296)
T PRK11189 134 AYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRAL-W------------LYLAESKLDPKQAKENLKQRYEKLDKEQ- 199 (296)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH-H------------HHHHHccCCHHHHHHHHHHHHhhCCccc-
Confidence 9999999999999999999999999999999974211 1 2234557899999999988775543222
Q ss_pred HHHHHHHHHHHhCCHHHH--HHHH----HHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHH
Q 005108 516 LYCNRAACWFKLGQWERS--VEDS----NQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELP-DDNEIAESL 588 (714)
Q Consensus 516 ~~~~la~~~~~~g~~~~A--~~~~----~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p-~~~~~~~~L 588 (714)
|. .+.++..+|++.++ ++.+ +..+++.|+..++|+.+|.++.++|++++|+.+|+++++++| +..+.+..+
T Consensus 200 -~~-~~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~~~ 277 (296)
T PRK11189 200 -WG-WNIVEFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHRYAL 277 (296)
T ss_pred -cH-HHHHHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHHHH
Confidence 22 45666667776443 3222 233366777889999999999999999999999999999997 667777766
Q ss_pred HHHHHHh
Q 005108 589 FHAQVSL 595 (714)
Q Consensus 589 ~~~~~~l 595 (714)
.+.....
T Consensus 278 ~e~~~~~ 284 (296)
T PRK11189 278 LELALLG 284 (296)
T ss_pred HHHHHHH
Confidence 6655443
|
|
| >KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.4e-19 Score=156.40 Aligned_cols=97 Identities=26% Similarity=0.488 Sum_probs=89.4
Q ss_pred hhhhHHh-hhccCCCceEEEeecCCCccccccchHHHHHHhhCCC-cEEEEEecccCcchhhhCCccccceEEEEeCCeE
Q 005108 616 SSLEQFR-AAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYPS-INFLKVDIDESPGVAHAENVRIVPTFKIYKNGSR 693 (714)
Q Consensus 616 ~~~e~~~-~~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~-~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~ 693 (714)
.+...|+ .+++...+++|+|||+||++|+.+.|.|+++..+|.+ ++|++||+|+..+++..|+|..+||+++||||+.
T Consensus 48 ~s~~~~~~~Vi~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~ela~~Y~I~avPtvlvfknGe~ 127 (150)
T KOG0910|consen 48 QSDSEFDDKVINSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPELAEDYEISAVPTVLVFKNGEK 127 (150)
T ss_pred cCHHHHHHHHHccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEccccccchHhhcceeeeeEEEEEECCEE
Confidence 3334444 5777888999999999999999999999999999976 9999999999999999999999999999999999
Q ss_pred EEEEcCC-CHHHHHHHHhhh
Q 005108 694 MKEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 694 ~~~~~g~-~~~~l~~~~~~~ 712 (714)
+++++|. +.++|+++|+++
T Consensus 128 ~d~~vG~~~~~~l~~~i~k~ 147 (150)
T KOG0910|consen 128 VDRFVGAVPKEQLRSLIKKF 147 (150)
T ss_pred eeeecccCCHHHHHHHHHHH
Confidence 9999999 999999999986
|
|
| >KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.4e-19 Score=148.85 Aligned_cols=85 Identities=38% Similarity=0.604 Sum_probs=82.1
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCcchhhhCCccccceEEEEeCCeEEEEEcCCCHHHHHH
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKEIVCPSRDMLEH 707 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~~~~g~~~~~l~~ 707 (714)
...++++|+++||+||+.+.|.+.+|+.+|+++.|++||+|+++++++.++|..+|||++||+|+.+.+++|.++++|++
T Consensus 21 ~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~v~Flkvdvde~~~~~~~~~V~~~PTf~f~k~g~~~~~~vGa~~~~l~~ 100 (106)
T KOG0907|consen 21 DKLVVVDFYATWCGPCKAIAPKFEKLAEKYPDVVFLKVDVDELEEVAKEFNVKAMPTFVFYKGGEEVDEVVGANKAELEK 100 (106)
T ss_pred CCeEEEEEECCCCcchhhhhhHHHHHHHHCCCCEEEEEecccCHhHHHhcCceEeeEEEEEECCEEEEEEecCCHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhh
Q 005108 708 SVRHY 712 (714)
Q Consensus 708 ~~~~~ 712 (714)
.|+++
T Consensus 101 ~i~~~ 105 (106)
T KOG0907|consen 101 KIAKH 105 (106)
T ss_pred HHHhc
Confidence 99876
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.79 E-value=3e-17 Score=162.10 Aligned_cols=285 Identities=13% Similarity=0.024 Sum_probs=252.4
Q ss_pred CCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHH
Q 005108 236 GICGGDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQR 315 (714)
Q Consensus 236 ~~~p~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~ 315 (714)
..-|+|...+..+|.+++..|++++|+..|+++.-++|.+....-..|.++...|++++-...-...+..+.....-|+-
T Consensus 226 ~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV 305 (564)
T KOG1174|consen 226 TTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFV 305 (564)
T ss_pred ccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhh
Confidence 46788999999999999999999999999999999999999999999999999999999999989999888778888999
Q ss_pred HHHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 005108 316 LGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEA 395 (714)
Q Consensus 316 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~ 395 (714)
-+.+++..+++..|+.+-+++++..+.. +..++-++..+...++.++|+-.|..++.+.|. ....|..+..+
T Consensus 306 ~~~~l~~~K~~~rAL~~~eK~I~~~~r~-------~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~-rL~~Y~GL~hs 377 (564)
T KOG1174|consen 306 HAQLLYDEKKFERALNFVEKCIDSEPRN-------HEALILKGRLLIALERHTQAVIAFRTAQMLAPY-RLEIYRGLFHS 377 (564)
T ss_pred hhhhhhhhhhHHHHHHHHHHHhccCccc-------chHHHhccHHHHhccchHHHHHHHHHHHhcchh-hHHHHHHHHHH
Confidence 9999999999999999999998744333 355777888899999999999999999999886 45677779999
Q ss_pred HHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHH-HHHHH-hCcHHHHHHHHHHHhccCCCCHHHHHH
Q 005108 396 LLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRA-QIEMA-LGRFENAVTAAEKAGQIDPRNVEVAVL 473 (714)
Q Consensus 396 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la-~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~ 473 (714)
|+..|++.+|....+.+++.-|.+ +..+..+| .+++. ----++|.+++++++.+.|....+...
T Consensus 378 YLA~~~~kEA~~~An~~~~~~~~s--------------A~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~ 443 (564)
T KOG1174|consen 378 YLAQKRFKEANALANWTIRLFQNS--------------ARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNL 443 (564)
T ss_pred HHhhchHHHHHHHHHHHHHHhhcc--------------hhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHH
Confidence 999999999999999999999988 66777775 44433 334689999999999999999888776
Q ss_pred HHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 005108 474 LNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLR 553 (714)
Q Consensus 474 l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 553 (714)
+ +..+...|++++++.++++.+...| +..++..||.++...+.+++|+++|..|++++|++..++..
T Consensus 444 ~------------AEL~~~Eg~~~D~i~LLe~~L~~~~-D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~G 510 (564)
T KOG1174|consen 444 I------------AELCQVEGPTKDIIKLLEKHLIIFP-DVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRG 510 (564)
T ss_pred H------------HHHHHhhCccchHHHHHHHHHhhcc-ccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHH
Confidence 6 8889999999999999999999887 56789999999999999999999999999999999866654
Q ss_pred HH
Q 005108 554 RA 555 (714)
Q Consensus 554 la 555 (714)
+-
T Consensus 511 l~ 512 (564)
T KOG1174|consen 511 LR 512 (564)
T ss_pred HH
Confidence 43
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.8e-16 Score=169.95 Aligned_cols=272 Identities=13% Similarity=0.053 Sum_probs=212.0
Q ss_pred cHHHHHHH-HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 005108 241 DAEELKRM-GNELYRKGCFGEALSMYDKAISLAPRNAAFR-SNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGS 318 (714)
Q Consensus 241 ~~~~~~~~-g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~-~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~ 318 (714)
++..++.+ +....+.|++++|..+|.++.+.+|++..+. ...+.++...|++++|+..++++++.+|++..++..++.
T Consensus 116 ~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~ 195 (398)
T PRK10747 116 QPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQ 195 (398)
T ss_pred chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 34555555 6666999999999999999999999985444 445999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHhhcC--CCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 005108 319 LLVRLGQVENARRHLCLSGQ--QADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEAL 396 (714)
Q Consensus 319 ~~~~~g~~~~A~~~~~~al~--~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~ 396 (714)
+|.+.|+|++|++.+.++.+ ..++.....+.. ..+..+........+.+...+.++..-+..|+ .+.+...++..+
T Consensus 196 ~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~-~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~-~~~~~~~~A~~l 273 (398)
T PRK10747 196 AYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQ-QAWIGLMDQAMADQGSEGLKRWWKNQSRKTRH-QVALQVAMAEHL 273 (398)
T ss_pred HHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHH-HHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhC-CHHHHHHHHHHH
Confidence 99999999999999988876 223333221111 11222222222333344444444443333343 567778899999
Q ss_pred HHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHh
Q 005108 397 LKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNN 476 (714)
Q Consensus 397 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 476 (714)
...|+.++|.+.++++++..++. ......+ ....++++++++.+++.++.+|+++..+..+
T Consensus 274 ~~~g~~~~A~~~L~~~l~~~~~~---------------~l~~l~~--~l~~~~~~~al~~~e~~lk~~P~~~~l~l~l-- 334 (398)
T PRK10747 274 IECDDHDTAQQIILDGLKRQYDE---------------RLVLLIP--RLKTNNPEQLEKVLRQQIKQHGDTPLLWSTL-- 334 (398)
T ss_pred HHCCCHHHHHHHHHHHHhcCCCH---------------HHHHHHh--hccCCChHHHHHHHHHHHhhCCCCHHHHHHH--
Confidence 99999999999999999955542 2222222 3345999999999999999999999988877
Q ss_pred HHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Q 005108 477 VKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQ 544 (714)
Q Consensus 477 l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 544 (714)
|.++...++|++|.++|+++++..|++ ..+..++.++.++|+.++|.++|++++.+.
T Consensus 335 ----------grl~~~~~~~~~A~~~le~al~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 335 ----------GQLLMKHGEWQEASLAFRAALKQRPDA-YDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred ----------HHHHHHCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 999999999999999999999999975 446689999999999999999999998753
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.8e-17 Score=162.18 Aligned_cols=205 Identities=17% Similarity=0.106 Sum_probs=169.6
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 005108 240 GDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSL 319 (714)
Q Consensus 240 ~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~ 319 (714)
..+..++.+|..++..|++++|+..|+++++.+|++..++..+|.++..+|++++|++.|+++++.+|.+..++..+|.+
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 108 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTF 108 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence 34788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 005108 320 LVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKL 399 (714)
Q Consensus 320 ~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~ 399 (714)
+...|++++|+..|++++..... ......+..++.++...
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~----------------------------------------~~~~~~~~~l~~~~~~~ 148 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLY----------------------------------------PQPARSLENAGLCALKA 148 (234)
T ss_pred HHHcccHHHHHHHHHHHHhcccc----------------------------------------ccchHHHHHHHHHHHHc
Confidence 99999999999998877531110 01233445578888888
Q ss_pred CCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHH
Q 005108 400 HQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKL 479 (714)
Q Consensus 400 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~ 479 (714)
|++++|...+.++++.+|.+ ...+..++.++...|++++|+.++++++...|.+...+..+
T Consensus 149 g~~~~A~~~~~~~~~~~~~~--------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~----- 209 (234)
T TIGR02521 149 GDFDKAEKYLTRALQIDPQR--------------PESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLG----- 209 (234)
T ss_pred CCHHHHHHHHHHHHHhCcCC--------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH-----
Confidence 88888888888888888776 56777888888888888888888888888777776666544
Q ss_pred HHHHHHHHhHHhhCcCHHHHHHHHHHhhccC
Q 005108 480 VARARARGNDLFKSERFTEACQAYGEGLRFD 510 (714)
Q Consensus 480 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~ 510 (714)
+.++...|++++|..+.+.+....
T Consensus 210 -------~~~~~~~~~~~~a~~~~~~~~~~~ 233 (234)
T TIGR02521 210 -------IRIARALGDVAAAQRYGAQLQKLF 233 (234)
T ss_pred -------HHHHHHHhhHHHHHHHHHHHHhhC
Confidence 777778888888888777665543
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.2e-17 Score=172.67 Aligned_cols=313 Identities=17% Similarity=0.054 Sum_probs=200.0
Q ss_pred CCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHH
Q 005108 236 GICGGDAEELKRMGNELYRKGCFGEALSMYDKAISLA-PRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQ 314 (714)
Q Consensus 236 ~~~p~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 314 (714)
..+|.|+.+.+.++..|..+++.+.|+++..++++.+ -+++.+|..+|.++...+++.+|+...+.+++-.++|.....
T Consensus 472 ~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~ 551 (799)
T KOG4162|consen 472 QFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMD 551 (799)
T ss_pred hcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhch
Confidence 4556666666666666666666666666666666663 334556666666666666666666666666666665555555
Q ss_pred HHHHHHHHcCCHHHHHHHHHhhcC--CCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 005108 315 RLGSLLVRLGQVENARRHLCLSGQ--QADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCR 392 (714)
Q Consensus 315 ~la~~~~~~g~~~~A~~~~~~al~--~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~l 392 (714)
....+-...++.++|+......+. ...+.....+......-..+.......+..+|+..+.++.. +
T Consensus 552 ~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~------------l 619 (799)
T KOG4162|consen 552 GKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSS------------L 619 (799)
T ss_pred hhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHH------------H
Confidence 555555555666666555544332 00000000000000000000001111111111111111110 0
Q ss_pred HHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHH
Q 005108 393 VEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAV 472 (714)
Q Consensus 393 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 472 (714)
+..-...-.++.. +.+. ...|.. ..-.+.....|...+..+...++.++|..++.++-+++|.....|+
T Consensus 620 ~a~~~~~~~se~~---Lp~s-~~~~~~-------~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~ 688 (799)
T KOG4162|consen 620 VASQLKSAGSELK---LPSS-TVLPGP-------DSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYY 688 (799)
T ss_pred HHhhhhhcccccc---cCcc-cccCCC-------CchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHH
Confidence 0010111111111 1111 111111 0111223567889999999999999999999999999998888887
Q ss_pred HHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHH--HHHHHHHhCCCCHHH
Q 005108 473 LLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVE--DSNQALLIQPNYTKA 550 (714)
Q Consensus 473 ~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~--~~~~al~~~p~~~~~ 550 (714)
.. |..+...|++++|.+.|..++.++|+++.....+|.++.+.|+-.-|.. .+..+++++|.+.++
T Consensus 689 ~~------------G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~ea 756 (799)
T KOG4162|consen 689 LR------------GLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEA 756 (799)
T ss_pred Hh------------hHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHH
Confidence 65 9999999999999999999999999999999999999999999888888 999999999999999
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHH
Q 005108 551 LLRRAASNSKLEKWADAVRDFEVLRRELPDDNE 583 (714)
Q Consensus 551 ~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~ 583 (714)
|+.+|.++.++|+.++|.++|+.++++++.+|-
T Consensus 757 W~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 757 WYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 999999999999999999999999999988763
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.78 E-value=7.1e-17 Score=160.25 Aligned_cols=202 Identities=18% Similarity=0.145 Sum_probs=173.5
Q ss_pred HHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhh
Q 005108 351 VEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGM 430 (714)
Q Consensus 351 ~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 430 (714)
...++.++..+...|++++|+..++++++.+|.. ...+..++.++...|++++|++.++++++..|.+
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~----------- 98 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDD-YLAYLALALYYQQLGELEKAEDSFRRALTLNPNN----------- 98 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-----------
Confidence 3556677888899999999999999999988874 5566678999999999999999999999998887
Q ss_pred hhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccC--CCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhc
Q 005108 431 LSEAYTFFVRAQIEMALGRFENAVTAAEKAGQID--PRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLR 508 (714)
Q Consensus 431 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~ 508 (714)
...+..++.++...|++++|+..+++++... +.....+.. +|.++...|++++|+..|+++++
T Consensus 99 ---~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~------------l~~~~~~~g~~~~A~~~~~~~~~ 163 (234)
T TIGR02521 99 ---GDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLEN------------AGLCALKAGDFDKAEKYLTRALQ 163 (234)
T ss_pred ---HHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHH------------HHHHHHHcCCHHHHHHHHHHHHH
Confidence 6678889999999999999999999998753 333444443 38889999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Q 005108 509 FDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELP 579 (714)
Q Consensus 509 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p 579 (714)
.+|++...+..+|.++...|++++|+..++++++..|.+...+..++.++...|++++|..+.+.+.+..|
T Consensus 164 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 234 (234)
T TIGR02521 164 IDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLFP 234 (234)
T ss_pred hCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhCc
Confidence 99999999999999999999999999999999998888888888899999999999999998888776654
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1e-17 Score=165.85 Aligned_cols=278 Identities=20% Similarity=0.194 Sum_probs=231.5
Q ss_pred hcCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHH
Q 005108 234 RGGICGGDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAH 313 (714)
Q Consensus 234 ~~~~~p~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 313 (714)
...++|+++..|...+..+...++|++|+-.+++.++++|.....+...+.|+..+++..+|.+.|+ +..++
T Consensus 75 Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A~~~~~--------~~~~~ 146 (486)
T KOG0550|consen 75 AIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEAEEKLK--------SKQAY 146 (486)
T ss_pred HHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHHHHHhh--------hhhhh
Confidence 3458999999999999999999999999999999999999999999999999999999999998887 12222
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 005108 314 QRLGSLLVRLGQVENARRHLCLSGQ-QADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCR 392 (714)
Q Consensus 314 ~~la~~~~~~g~~~~A~~~~~~al~-~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~l 392 (714)
....|+..+++.+. ..++ .......+..+.++...+++++|+..--.++++++.+...++ ..
T Consensus 147 -----------~~anal~~~~~~~~s~s~~-----pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~-vr 209 (486)
T KOG0550|consen 147 -----------KAANALPTLEKLAPSHSRE-----PACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALY-VR 209 (486)
T ss_pred -----------HHhhhhhhhhcccccccCC-----chhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHH-hc
Confidence 23344555555544 1111 122344555677889999999999999999999998655554 49
Q ss_pred HHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHH
Q 005108 393 VEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAV 472 (714)
Q Consensus 393 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 472 (714)
+.++....+.+.|+..|++++.++|+... ......+......|...|.-.++.|++.+|.++|..+|.++|++.....
T Consensus 210 g~~~yy~~~~~ka~~hf~qal~ldpdh~~--sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~na 287 (486)
T KOG0550|consen 210 GLCLYYNDNADKAINHFQQALRLDPDHQK--SKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNA 287 (486)
T ss_pred ccccccccchHHHHHHHhhhhccChhhhh--HHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhH
Confidence 99999999999999999999999999832 2333344455678899999999999999999999999999999866543
Q ss_pred HHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Q 005108 473 LLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPN 546 (714)
Q Consensus 473 ~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 546 (714)
.+ +.+++.+..+.|+..+|+..++.++++++....++...|.|+..+++|++|+++|+++++...+
T Consensus 288 kl--------Y~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 288 KL--------YGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HH--------HHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 33 4467999999999999999999999999999999999999999999999999999999997665
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.3e-17 Score=150.27 Aligned_cols=97 Identities=21% Similarity=0.208 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 005108 242 AEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLV 321 (714)
Q Consensus 242 ~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~ 321 (714)
+.+...+|..|+..|++..|...+++|++.||++..+|..+|.+|..+|+.+.|.+.|++|+.++|++.+++++.|..++
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC 114 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHH
Confidence 47788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHhhcC
Q 005108 322 RLGQVENARRHLCLSGQ 338 (714)
Q Consensus 322 ~~g~~~~A~~~~~~al~ 338 (714)
.+|++++|...|++++.
T Consensus 115 ~qg~~~eA~q~F~~Al~ 131 (250)
T COG3063 115 AQGRPEEAMQQFERALA 131 (250)
T ss_pred hCCChHHHHHHHHHHHh
Confidence 99999999999988875
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.3e-16 Score=165.75 Aligned_cols=347 Identities=18% Similarity=0.055 Sum_probs=281.2
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCcHHHHHHH
Q 005108 239 GGDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLD--PNYWRAHQRL 316 (714)
Q Consensus 239 p~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~l 316 (714)
.+++..|-.+...+...|+|+.+.+.|++++...-...+.|+.++.+|...|.-..|+..+++.+... |.+...+...
T Consensus 320 qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lma 399 (799)
T KOG4162|consen 320 QNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMA 399 (799)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHH
Confidence 36888899999999999999999999999999888888999999999999999999999999999988 7776666665
Q ss_pred HHH-HHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhH--HHH-------HcCCHHHHHHHHHHHHHcCCCCCH
Q 005108 317 GSL-LVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCT--DAR-------KVGDWKSALREGDAAIAAGADFSP 386 (714)
Q Consensus 317 a~~-~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~--~~~-------~~g~~~~Al~~~~~al~~~p~~~~ 386 (714)
+.+ +...+.+++++.+..+++..................+.+. .+. +.....++++.++++++.+|.+..
T Consensus 400 sklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~ 479 (799)
T KOG4162|consen 400 SKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPL 479 (799)
T ss_pred HHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCch
Confidence 554 4567999999999999986221111111111111222211 111 233456889999999999998654
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCC
Q 005108 387 QLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPR 466 (714)
Q Consensus 387 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 466 (714)
. .+.++.-|..+++.+.|+...++++++++.+ .+..|..++.++...+++.+|+...+.++...++
T Consensus 480 ~-if~lalq~A~~R~l~sAl~~~~eaL~l~~~~-------------~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~ 545 (799)
T KOG4162|consen 480 V-IFYLALQYAEQRQLTSALDYAREALALNRGD-------------SAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD 545 (799)
T ss_pred H-HHHHHHHHHHHHhHHHHHHHHHHHHHhcCCc-------------cHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh
Confidence 4 4459999999999999999999999997765 3889999999999999999999999999987777
Q ss_pred CHHH---------------------------HHHHH-------h------------------------------H-----
Q 005108 467 NVEV---------------------------AVLLN-------N------------------------------V----- 477 (714)
Q Consensus 467 ~~~~---------------------------~~~l~-------~------------------------------l----- 477 (714)
|... |.... + +
T Consensus 546 N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~ 625 (799)
T KOG4162|consen 546 NHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLK 625 (799)
T ss_pred hhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhh
Confidence 3211 11000 0 0
Q ss_pred ----------------------HHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHH
Q 005108 478 ----------------------KLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVE 535 (714)
Q Consensus 478 ----------------------~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 535 (714)
.....+...+..+.+.++.++|..++.++-+++|..+..|+..|.++...|++++|.+
T Consensus 626 ~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~ 705 (799)
T KOG4162|consen 626 SAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKE 705 (799)
T ss_pred hcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHH
Confidence 0011123457778888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHH--HHHHHHHhCCCCHHHHHHHHHHHHHhhhhc
Q 005108 536 DSNQALLIQPNYTKALLRRAASNSKLEKWADAVR--DFEVLRRELPDDNEIAESLFHAQVSLKKSR 599 (714)
Q Consensus 536 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~--~~~~al~~~p~~~~~~~~L~~~~~~l~~~~ 599 (714)
.|..++.++|+++.....+|.++.+.|+..-|.. .+..+++++|.++++|..|+.+...+++.+
T Consensus 706 af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~ 771 (799)
T KOG4162|consen 706 AFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSK 771 (799)
T ss_pred HHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchH
Confidence 9999999999999999999999999999888888 999999999999999999999998887655
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.77 E-value=9.9e-17 Score=147.91 Aligned_cols=206 Identities=19% Similarity=0.175 Sum_probs=114.4
Q ss_pred HHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhh
Q 005108 352 EKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGML 431 (714)
Q Consensus 352 ~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 431 (714)
...+.++..|.+.|++..|...++++++.+|++ ...|..+|.+|...|+.+.|.+.|++++.++|++
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~-~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~------------ 102 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHDPSY-YLAHLVRAHYYQKLGENDLADESYRKALSLAPNN------------ 102 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc-HHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCc------------
Confidence 344445555556666666666666666666552 3334445556666666666666666666666655
Q ss_pred hhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCC---HHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhc
Q 005108 432 SEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRN---VEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLR 508 (714)
Q Consensus 432 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~ 508 (714)
..++++.|..++.+|++++|...|++|+. +|.. ...+.. +|.|..+.|+++.|.++|+++++
T Consensus 103 --GdVLNNYG~FLC~qg~~~eA~q~F~~Al~-~P~Y~~~s~t~eN------------~G~Cal~~gq~~~A~~~l~raL~ 167 (250)
T COG3063 103 --GDVLNNYGAFLCAQGRPEEAMQQFERALA-DPAYGEPSDTLEN------------LGLCALKAGQFDQAEEYLKRALE 167 (250)
T ss_pred --cchhhhhhHHHHhCCChHHHHHHHHHHHh-CCCCCCcchhhhh------------hHHHHhhcCCchhHHHHHHHHHH
Confidence 45555556566666666666666665553 2222 222222 25555556666666666666666
Q ss_pred cCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHH
Q 005108 509 FDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIA 585 (714)
Q Consensus 509 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~ 585 (714)
++|+.+.....++..+++.|+|..|..++++.....+-..+.+.....+-..+|+-+.|.++=.++.+..|...+..
T Consensus 168 ~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~q 244 (250)
T COG3063 168 LDPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEYQ 244 (250)
T ss_pred hCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHH
Confidence 66655555555666666666666666555555554444455555555555555555555555555555555555443
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=8.2e-16 Score=182.17 Aligned_cols=336 Identities=14% Similarity=0.086 Sum_probs=244.8
Q ss_pred chhhhhcCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC--------------------------------
Q 005108 229 NVNRNRGGICGGDAEELKRMGNELYRKGCFGEALSMYDKAISL--APR-------------------------------- 274 (714)
Q Consensus 229 ~~~~~~~~~~p~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~--~p~-------------------------------- 274 (714)
.+...+..+...|...|..+...|.+.|++++|+++|+++.+. .|+
T Consensus 240 ~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~ 319 (857)
T PLN03077 240 SARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGF 319 (857)
T ss_pred HHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCC
Confidence 3444445566678889999999999999999999999998764 333
Q ss_pred --CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC-CCChHHHHHHHHH
Q 005108 275 --NAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQ-QADPTEVHRLQVV 351 (714)
Q Consensus 275 --~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~-~~~~~~~~~l~~~ 351 (714)
+..++..+...|.+.|++++|.+.|+++.. .+...|..+...|.+.|++++|++.|+++.+ ...|+...
T Consensus 320 ~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t----- 391 (857)
T PLN03077 320 AVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET---KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEIT----- 391 (857)
T ss_pred ccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCcee-----
Confidence 345566667777777777777777776542 3455677777788888888888888877654 22222211
Q ss_pred HHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhh
Q 005108 352 EKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGML 431 (714)
Q Consensus 352 ~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 431 (714)
+......+.+.|++++|.+.++.+++.+......++..+...|.+.|++++|.+.|+++.+.+
T Consensus 392 --~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d--------------- 454 (857)
T PLN03077 392 --IASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKD--------------- 454 (857)
T ss_pred --HHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCC---------------
Confidence 111223466789999999999999998887778888889999999999999999999886532
Q ss_pred hhHHHHHHHHHHHHHhCcHHHHHHHHHHHhcc-CCCCHHHHHHHHhHHH------HHH----------------HHHHHh
Q 005108 432 SEAYTFFVRAQIEMALGRFENAVTAAEKAGQI-DPRNVEVAVLLNNVKL------VAR----------------ARARGN 488 (714)
Q Consensus 432 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~l~~------~~~----------------~~~~g~ 488 (714)
...|..+...|...|++++|+.+|++++.. .|+.......+..+.. ... ...+..
T Consensus 455 --~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~ 532 (857)
T PLN03077 455 --VISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLD 532 (857)
T ss_pred --eeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHH
Confidence 336888999999999999999999999753 4554443333322111 100 123347
Q ss_pred HHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhccHHH
Q 005108 489 DLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALL--IQPNYTKALLRRAASNSKLEKWAD 566 (714)
Q Consensus 489 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~e 566 (714)
.|.+.|++++|...|++. +.+...|..+...|.+.|+.++|++.|+++.+ +.|+. ..+..+...+.+.|++++
T Consensus 533 ~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~-~T~~~ll~a~~~~g~v~e 607 (857)
T PLN03077 533 LYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDE-VTFISLLCACSRSGMVTQ 607 (857)
T ss_pred HHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCc-ccHHHHHHHHhhcChHHH
Confidence 788999999999999886 45788999999999999999999999999887 45664 566677778889999999
Q ss_pred HHHHHHHHHHhCCC--CHHHHHHHHHHHHHhh
Q 005108 567 AVRDFEVLRRELPD--DNEIAESLFHAQVSLK 596 (714)
Q Consensus 567 A~~~~~~al~~~p~--~~~~~~~L~~~~~~l~ 596 (714)
|.++|+.+.+..+- +.+.+..+..++...+
T Consensus 608 a~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G 639 (857)
T PLN03077 608 GLEYFHSMEEKYSITPNLKHYACVVDLLGRAG 639 (857)
T ss_pred HHHHHHHHHHHhCCCCchHHHHHHHHHHHhCC
Confidence 99999998854432 2344555555444443
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.4e-16 Score=169.58 Aligned_cols=258 Identities=19% Similarity=0.173 Sum_probs=193.2
Q ss_pred CCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--
Q 005108 236 GICGGDAEELKRMGNELYRKGCFGEALSMYDKAISL--------APRNAAFRSNRAAALTGLGRIGEAVKECEEAVRL-- 305 (714)
Q Consensus 236 ~~~p~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-- 305 (714)
...|.-......++..|..+|+|++|+..|+++++. .|.-......+|.+|..++++++|+..|++|+.+
T Consensus 193 ~~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e 272 (508)
T KOG1840|consen 193 DEDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIRE 272 (508)
T ss_pred cCCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 456666777788999999999999999999999988 4544555566899999999999999999999875
Q ss_pred ------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHH
Q 005108 306 ------DPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIA 379 (714)
Q Consensus 306 ------~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~ 379 (714)
+|....++.+||.+|...|++++|..++++++ +++++...
T Consensus 273 ~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al----------------------------------~I~~~~~~ 318 (508)
T KOG1840|consen 273 EVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERAL----------------------------------EIYEKLLG 318 (508)
T ss_pred HhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHH----------------------------------HHHHHhhc
Confidence 34557789999999999999999999886664 33333222
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHH
Q 005108 380 AGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEK 459 (714)
Q Consensus 380 ~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 459 (714)
..+......+.+++.++..++++++|+.++++++++.-+-+. ......+..+.++|.+|..+|+|++|.++|++
T Consensus 319 ~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g------~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ 392 (508)
T KOG1840|consen 319 ASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG------EDNVNLAKIYANLAELYLKMGKYKEAEELYKK 392 (508)
T ss_pred cChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc------ccchHHHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 233334455667888899999999999999988876542211 01123467899999999999999999999999
Q ss_pred HhccCC-----CCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhcc-------CCCCHHHHHHHHHHHHHh
Q 005108 460 AGQIDP-----RNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRF-------DPSNSVLYCNRAACWFKL 527 (714)
Q Consensus 460 al~~~p-----~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~-------~p~~~~~~~~la~~~~~~ 527 (714)
|+.+.. .+...-..++ ++|..|.+.+++.+|.+.|.+++.+ .|+-...|.+||.+|..+
T Consensus 393 ai~~~~~~~~~~~~~~~~~l~---------~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~ 463 (508)
T KOG1840|consen 393 AIQILRELLGKKDYGVGKPLN---------QLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQ 463 (508)
T ss_pred HHHHHHhcccCcChhhhHHHH---------HHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHc
Confidence 997642 2233222232 3488899999999999999887765 234456777788888888
Q ss_pred CCHHHHHHHHHHHHH
Q 005108 528 GQWERSVEDSNQALL 542 (714)
Q Consensus 528 g~~~~A~~~~~~al~ 542 (714)
|++++|+++.++++.
T Consensus 464 g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 464 GNYEAAEELEEKVLN 478 (508)
T ss_pred ccHHHHHHHHHHHHH
Confidence 888888887777764
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.74 E-value=6e-15 Score=142.10 Aligned_cols=276 Identities=12% Similarity=0.115 Sum_probs=231.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc-----HHHHHHHHHHH
Q 005108 246 KRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNY-----WRAHQRLGSLL 320 (714)
Q Consensus 246 ~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~a~~~la~~~ 320 (714)
|..|..++...+.++|++.|..+++.+|...++++.+|.+|...|..+.||..-+..++. |+. ..+.+.||.-|
T Consensus 39 Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s-pdlT~~qr~lAl~qL~~Dy 117 (389)
T COG2956 39 YVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES-PDLTFEQRLLALQQLGRDY 117 (389)
T ss_pred HHhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHHHH
Confidence 457788888999999999999999999999999999999999999999999988877653 543 56889999999
Q ss_pred HHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHH
Q 005108 321 VRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFS----PQLSMCRVEAL 396 (714)
Q Consensus 321 ~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~----~~~~~~la~~~ 396 (714)
...|-++.|...|....+..+... .+.-.+..+|....+|++|++..++..+++++.. ..+|..++..+
T Consensus 118 m~aGl~DRAE~~f~~L~de~efa~-------~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~ 190 (389)
T COG2956 118 MAAGLLDRAEDIFNQLVDEGEFAE-------GALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQA 190 (389)
T ss_pred HHhhhhhHHHHHHHHHhcchhhhH-------HHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHH
Confidence 999999999999998876444332 2233445568899999999999999999988533 45677788889
Q ss_pred HHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHH-HHHHHH
Q 005108 397 LKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVE-VAVLLN 475 (714)
Q Consensus 397 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~l~ 475 (714)
....+++.|+..+.++++.+|++ ..+-..+|.++...|+|+.|++.++.+++.+|+... +...
T Consensus 191 ~~~~~~d~A~~~l~kAlqa~~~c--------------vRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~-- 254 (389)
T COG2956 191 LASSDVDRARELLKKALQADKKC--------------VRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEM-- 254 (389)
T ss_pred hhhhhHHHHHHHHHHHHhhCccc--------------eehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHH--
Confidence 99999999999999999999999 778899999999999999999999999999998743 3333
Q ss_pred hHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 005108 476 NVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRA 555 (714)
Q Consensus 476 ~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 555 (714)
+-.+|...|+.++.+..+.++++..+. +.+...++..-....-.+.|..++.+-+...|+- ..++.+-
T Consensus 255 ----------L~~~Y~~lg~~~~~~~fL~~~~~~~~g-~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~-~gf~rl~ 322 (389)
T COG2956 255 ----------LYECYAQLGKPAEGLNFLRRAMETNTG-ADAELMLADLIELQEGIDAAQAYLTRQLRRKPTM-RGFHRLM 322 (389)
T ss_pred ----------HHHHHHHhCCHHHHHHHHHHHHHccCC-ccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcH-HHHHHHH
Confidence 378899999999999999999998764 5566667777777788899999999999999984 3444443
Q ss_pred HH
Q 005108 556 AS 557 (714)
Q Consensus 556 ~~ 557 (714)
..
T Consensus 323 ~~ 324 (389)
T COG2956 323 DY 324 (389)
T ss_pred Hh
Confidence 33
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.9e-16 Score=167.26 Aligned_cols=259 Identities=19% Similarity=0.139 Sum_probs=183.4
Q ss_pred hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCCCChH-HHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHc--
Q 005108 304 RLDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPT-EVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAA-- 380 (714)
Q Consensus 304 ~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~-- 380 (714)
..+|.-..+...++..|..+|+|++|+..++.+++..... ....+.........+..|...+++++|+..|++++.+
T Consensus 193 ~~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e 272 (508)
T KOG1840|consen 193 DEDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIRE 272 (508)
T ss_pred cCCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 3466666666666666666666666666666665421000 0111111122223566677777777777777777655
Q ss_pred ---CCC--CCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHH
Q 005108 381 ---GAD--FSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVT 455 (714)
Q Consensus 381 ---~p~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 455 (714)
+++ .....+.+++.+|...|++++|..++++++++.......... ..+..+..++.++...+++++|+.
T Consensus 273 ~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~------~v~~~l~~~~~~~~~~~~~Eea~~ 346 (508)
T KOG1840|consen 273 EVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHP------EVAAQLSELAAILQSMNEYEEAKK 346 (508)
T ss_pred HhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChH------HHHHHHHHHHHHHHHhcchhHHHH
Confidence 222 234567779999999999999999999988765442111111 125568889999999999999999
Q ss_pred HHHHHhccC-----CCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccC--------CCCHHHHHHHHH
Q 005108 456 AAEKAGQID-----PRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFD--------PSNSVLYCNRAA 522 (714)
Q Consensus 456 ~~~~al~~~-----p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~ 522 (714)
++++++++. ++++..-.. ..++|.+|+.+|+|++|.++|++++.+. +.....+.++|.
T Consensus 347 l~q~al~i~~~~~g~~~~~~a~~---------~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~ 417 (508)
T KOG1840|consen 347 LLQKALKIYLDAPGEDNVNLAKI---------YANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAE 417 (508)
T ss_pred HHHHHHHHHHhhccccchHHHHH---------HHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHH
Confidence 999998653 233222222 2345999999999999999999999863 233567889999
Q ss_pred HHHHhCCHHHHHHHHHHHHHh-------CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Q 005108 523 CWFKLGQWERSVEDSNQALLI-------QPNYTKALLRRAASNSKLEKWADAVRDFEVLRRE 577 (714)
Q Consensus 523 ~~~~~g~~~~A~~~~~~al~~-------~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 577 (714)
.|.+.+++++|.+.|.+++.+ .|+-...+.+|+.+|..+|++++|+++.++++..
T Consensus 418 ~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~ 479 (508)
T KOG1840|consen 418 AYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNA 479 (508)
T ss_pred HHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 999999999999999998875 3455688999999999999999999999988743
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.5e-16 Score=158.61 Aligned_cols=240 Identities=15% Similarity=0.035 Sum_probs=185.1
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 005108 240 GDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLG-RIGEAVKECEEAVRLDPNYWRAHQRLGS 318 (714)
Q Consensus 240 ~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~a~~~la~ 318 (714)
+-.+++-.+-.++...+++++|+..++++|+++|++..+|..++.++..+| ++++++..++++++.+|++..+|...+.
T Consensus 35 ~~~~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~ 114 (320)
T PLN02789 35 EFREAMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRW 114 (320)
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHH
Confidence 344455444455666778888888888888888888888888888888887 5788888888888888888888887777
Q ss_pred HHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 005108 319 LLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLK 398 (714)
Q Consensus 319 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~ 398 (714)
++.++++.
T Consensus 115 ~l~~l~~~------------------------------------------------------------------------ 122 (320)
T PLN02789 115 LAEKLGPD------------------------------------------------------------------------ 122 (320)
T ss_pred HHHHcCch------------------------------------------------------------------------
Confidence 66554421
Q ss_pred cCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHH
Q 005108 399 LHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVK 478 (714)
Q Consensus 399 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~ 478 (714)
.+++++.+++++++.+|.+ ..+|..++.++...|++++|+++++++++.+|.+..+|...
T Consensus 123 --~~~~el~~~~kal~~dpkN--------------y~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R---- 182 (320)
T PLN02789 123 --AANKELEFTRKILSLDAKN--------------YHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQR---- 182 (320)
T ss_pred --hhHHHHHHHHHHHHhCccc--------------HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHH----
Confidence 0134455666777777877 77888888888888888888888888888888888888765
Q ss_pred HHHHHHHHHhHHhhC---cC----HHHHHHHHHHhhccCCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHhCCCC
Q 005108 479 LVARARARGNDLFKS---ER----FTEACQAYGEGLRFDPSNSVLYCNRAACWFK----LGQWERSVEDSNQALLIQPNY 547 (714)
Q Consensus 479 ~~~~~~~~g~~~~~~---g~----~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~ 547 (714)
+.++.+. |. .++++++..++|.++|+|..+|+.++.++.. +++..+|++.+.++++.+|+.
T Consensus 183 --------~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s 254 (320)
T PLN02789 183 --------YFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNH 254 (320)
T ss_pred --------HHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCc
Confidence 5555443 22 3578889999999999999999999999988 566788999999999999999
Q ss_pred HHHHHHHHHHHHHhc------------------cHHHHHHHHHHHHHhCC
Q 005108 548 TKALLRRAASNSKLE------------------KWADAVRDFEVLRRELP 579 (714)
Q Consensus 548 ~~~~~~la~~~~~~g------------------~~~eA~~~~~~al~~~p 579 (714)
..++..|+.+|.... ..++|.+.++.+-+.||
T Consensus 255 ~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~~~d~ 304 (320)
T PLN02789 255 VFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELEVADP 304 (320)
T ss_pred HHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHHhhCc
Confidence 999999999997632 23556666666655554
|
|
| >cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.1e-18 Score=145.56 Aligned_cols=87 Identities=18% Similarity=0.217 Sum_probs=77.1
Q ss_pred hHHhhhcc--CCCceEEEeecCCCccccccchHHHHHHhhCCC-cEEEEEecccCcchhhhCCccccceEEEEeCCeEEE
Q 005108 619 EQFRAAVS--LPGVSVVHFKSASNLHCKQISPYVETLCGRYPS-INFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMK 695 (714)
Q Consensus 619 e~~~~~i~--~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~-~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~ 695 (714)
+.|...+. ..++++|+|||+||++|+.+.|.++++..++++ +.|++||+|+.++++..|+|+++|||++||||+.+.
T Consensus 3 ~~~~~~i~~~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~~la~~~~V~~iPTf~~fk~G~~v~ 82 (114)
T cd02954 3 WAVDQAILSEEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVPDFNKMYELYDPPTVMFFFRNKHMK 82 (114)
T ss_pred HHHHHHHhccCCCEEEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCCHHHHHHcCCCCCCEEEEEECCEEEE
Confidence 34555554 467899999999999999999999999999987 689999999999999999999999999999999999
Q ss_pred EEcCC-CHHHH
Q 005108 696 EIVCP-SRDML 705 (714)
Q Consensus 696 ~~~g~-~~~~l 705 (714)
++.|. +..+|
T Consensus 83 ~~~G~~~~~~~ 93 (114)
T cd02954 83 IDLGTGNNNKI 93 (114)
T ss_pred EEcCCCCCceE
Confidence 99986 54443
|
It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing. |
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.7e-15 Score=154.95 Aligned_cols=222 Identities=13% Similarity=-0.010 Sum_probs=169.0
Q ss_pred cCCCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH--HHHHHHHHHHHhcCCCcHH
Q 005108 235 GGICGGDAEELKRMGNELYRKG-CFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRI--GEAVKECEEAVRLDPNYWR 311 (714)
Q Consensus 235 ~~~~p~~~~~~~~~g~~~~~~g-~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~p~~~~ 311 (714)
..++|++..+|..++.++...| ++++|+.+++++++.+|++..+|..++.++..+|+. ++++.+++++++++|++..
T Consensus 64 I~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~ 143 (320)
T PLN02789 64 IRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYH 143 (320)
T ss_pred HHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHH
Confidence 4579999999999999999999 689999999999999999999999999999999874 7889999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 005108 312 AHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMC 391 (714)
Q Consensus 312 a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~ 391 (714)
+|..++.++...|++++|++. ++++|+.+|.+.. .|..
T Consensus 144 AW~~R~w~l~~l~~~~eeL~~-----------------------------------------~~~~I~~d~~N~s-AW~~ 181 (320)
T PLN02789 144 AWSHRQWVLRTLGGWEDELEY-----------------------------------------CHQLLEEDVRNNS-AWNQ 181 (320)
T ss_pred HHHHHHHHHHHhhhHHHHHHH-----------------------------------------HHHHHHHCCCchh-HHHH
Confidence 999999888776655555443 3555566655322 2222
Q ss_pred HHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHH
Q 005108 392 RVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVA 471 (714)
Q Consensus 392 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 471 (714)
++.++...++. ... ....++++++..+++.++|++..+|
T Consensus 182 R~~vl~~~~~l-------------~~~----------------------------~~~~e~el~y~~~aI~~~P~N~SaW 220 (320)
T PLN02789 182 RYFVITRSPLL-------------GGL----------------------------EAMRDSELKYTIDAILANPRNESPW 220 (320)
T ss_pred HHHHHHhcccc-------------ccc----------------------------cccHHHHHHHHHHHHHhCCCCcCHH
Confidence 43333222110 000 0113578889999999999999999
Q ss_pred HHHHhHHHHHHHHHHHhHHhh----CcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhC------------------C
Q 005108 472 VLLNNVKLVARARARGNDLFK----SERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLG------------------Q 529 (714)
Q Consensus 472 ~~l~~l~~~~~~~~~g~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g------------------~ 529 (714)
..+ +.++.. .++..+|+..+.++++.+|.+..++..|+.+|.... .
T Consensus 221 ~Yl------------~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (320)
T PLN02789 221 RYL------------RGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSD 288 (320)
T ss_pred HHH------------HHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhcccccccc
Confidence 877 555655 356778999999999999999999999999998632 3
Q ss_pred HHHHHHHHHHHHHhCCCCHHHH
Q 005108 530 WERSVEDSNQALLIQPNYTKAL 551 (714)
Q Consensus 530 ~~~A~~~~~~al~~~p~~~~~~ 551 (714)
.++|.+.|+.+-+.||--...|
T Consensus 289 ~~~a~~~~~~l~~~d~ir~~yw 310 (320)
T PLN02789 289 STLAQAVCSELEVADPMRRNYW 310 (320)
T ss_pred HHHHHHHHHHHHhhCcHHHHHH
Confidence 4678888887766666443333
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.73 E-value=7.8e-15 Score=156.19 Aligned_cols=315 Identities=12% Similarity=-0.042 Sum_probs=226.9
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHH
Q 005108 238 CGGDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRN---AAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQ 314 (714)
Q Consensus 238 ~p~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 314 (714)
+|+.+..+..+|..+...|+.++|...+.++.+..+.+ ....+..+.++...|++++|+..++++++.+|++..++.
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~ 81 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALK 81 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHH
Confidence 68888999999999999999999999999999887755 566778899999999999999999999999999987777
Q ss_pred HHHHHHHHcCCHHHHHHHHHhhcC---CCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 005108 315 RLGSLLVRLGQVENARRHLCLSGQ---QADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMC 391 (714)
Q Consensus 315 ~la~~~~~~g~~~~A~~~~~~al~---~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~ 391 (714)
. +..+...+++..+.....+++. ...+.. ......++.++...|++++|+..++++++..|+. ...+..
T Consensus 82 ~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~------~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~-~~~~~~ 153 (355)
T cd05804 82 L-HLGAFGLGDFSGMRDHVARVLPLWAPENPDY------WYLLGMLAFGLEEAGQYDRAEEAARRALELNPDD-AWAVHA 153 (355)
T ss_pred H-hHHHHHhcccccCchhHHHHHhccCcCCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-cHHHHH
Confidence 5 5555555544444433333332 222222 2234456677899999999999999999999986 455666
Q ss_pred HHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHH
Q 005108 392 RVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVA 471 (714)
Q Consensus 392 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 471 (714)
++.++...|++++|+.++++++...|.+.. .....|..++.++...|++++|+..|++++...|......
T Consensus 154 la~i~~~~g~~~eA~~~l~~~l~~~~~~~~----------~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~ 223 (355)
T cd05804 154 VAHVLEMQGRFKEGIAFMESWRDTWDCSSM----------LRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPAL 223 (355)
T ss_pred HHHHHHHcCCHHHHHHHHHhhhhccCCCcc----------hhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHH
Confidence 999999999999999999999998775311 1134577899999999999999999999987666322111
Q ss_pred HHHHhHHHHHHHHHHHhHHhhCc------CHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Q 005108 472 VLLNNVKLVARARARGNDLFKSE------RFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQP 545 (714)
Q Consensus 472 ~~l~~l~~~~~~~~~g~~~~~~g------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 545 (714)
..+... .+...+...| +|++........... +.........+.++...|+.++|...++.+.....
T Consensus 224 ~~~~~~-------~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~ 295 (355)
T cd05804 224 DLLDAA-------SLLWRLELAGHVDVGDRWEDLADYAAWHFPD-HGLAFNDLHAALALAGAGDKDALDKLLAALKGRAS 295 (355)
T ss_pred HHhhHH-------HHHHHHHhcCCCChHHHHHHHHHHHHhhcCc-ccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Confidence 110000 0012222233 232222222111111 12233334688899999999999999988766332
Q ss_pred C---------CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Q 005108 546 N---------YTKALLRRAASNSKLEKWADAVRDFEVLRREL 578 (714)
Q Consensus 546 ~---------~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 578 (714)
. ........+.++...|++++|++.+..++.+-
T Consensus 296 ~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 296 SADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred ccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 2 24666788999999999999999999998764
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PHA02278 thioredoxin-like protein | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.7e-17 Score=138.39 Aligned_cols=92 Identities=14% Similarity=0.175 Sum_probs=81.5
Q ss_pred hhhHHhhhccCCCceEEEeecCCCccccccchHHHHHHhhCC-CcEEEEEecccC----cchhhhCCccccceEEEEeCC
Q 005108 617 SLEQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYP-SINFLKVDIDES----PGVAHAENVRIVPTFKIYKNG 691 (714)
Q Consensus 617 ~~e~~~~~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~-~~~~~~vd~d~~----~~l~~~~~v~~~Pt~~~~~~G 691 (714)
+.+.|.+.+...++++|+|||+||++|+.+.|.++++..++. .+.|++||+|.. ++++..|+|+++|||++|+||
T Consensus 3 ~~~~~~~~i~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~fk~G 82 (103)
T PHA02278 3 SLVDLNTAIRQKKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGYKDG 82 (103)
T ss_pred CHHHHHHHHhCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccccEEEEEECC
Confidence 346777777778899999999999999999999999988753 478999999986 689999999999999999999
Q ss_pred eEEEEEcCC-CHHHHHHH
Q 005108 692 SRMKEIVCP-SRDMLEHS 708 (714)
Q Consensus 692 ~~~~~~~g~-~~~~l~~~ 708 (714)
+.+.++.|. +.+.|+++
T Consensus 83 ~~v~~~~G~~~~~~l~~~ 100 (103)
T PHA02278 83 QLVKKYEDQVTPMQLQEL 100 (103)
T ss_pred EEEEEEeCCCCHHHHHhh
Confidence 999999997 88887654
|
|
| >cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.6e-17 Score=139.32 Aligned_cols=96 Identities=25% Similarity=0.326 Sum_probs=86.2
Q ss_pred hhHHhhhccC--CCceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCc---chhhhCCccccceEEEEeCCe
Q 005108 618 LEQFRAAVSL--PGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESP---GVAHAENVRIVPTFKIYKNGS 692 (714)
Q Consensus 618 ~e~~~~~i~~--~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~---~l~~~~~v~~~Pt~~~~~~G~ 692 (714)
.++|...+.. +++++|+||++||++|+.+.|.++++..+++++.|++||+|+++ +++..|+|.++||+++|++|+
T Consensus 3 ~~~~~~~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~G~ 82 (103)
T cd02985 3 VEELDEALKKAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTCNDVVFLLVNGDENDSTMELCRREKIIEVPHFLFYKDGE 82 (103)
T ss_pred HHHHHHHHHHcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHCCCCEEEEEECCCChHHHHHHHHcCCCcCCEEEEEeCCe
Confidence 3456665543 67999999999999999999999999999988999999999875 799999999999999999999
Q ss_pred EEEEEcCCCHHHHHHHHhhhc
Q 005108 693 RMKEIVCPSRDMLEHSVRHYS 713 (714)
Q Consensus 693 ~~~~~~g~~~~~l~~~~~~~~ 713 (714)
.+.++.|...++|++.|.+|+
T Consensus 83 ~v~~~~G~~~~~l~~~~~~~~ 103 (103)
T cd02985 83 KIHEEEGIGPDELIGDVLYYG 103 (103)
T ss_pred EEEEEeCCCHHHHHHHHHhcC
Confidence 999999999999999988775
|
CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form. |
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.6e-14 Score=149.56 Aligned_cols=183 Identities=14% Similarity=0.077 Sum_probs=154.8
Q ss_pred CCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHH
Q 005108 236 GICGGDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQR 315 (714)
Q Consensus 236 ~~~p~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~ 315 (714)
+.++.+...|..+|..+....+|++|+.+|..|+.++|+|..+|..++.+..++++++-....-.+.+++.|.....|..
T Consensus 69 r~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~ 148 (700)
T KOG1156|consen 69 RNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIG 148 (700)
T ss_pred ccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHH
Confidence 36777889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHhhcCCC-ChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 005108 316 LGSLLVRLGQVENARRHLCLSGQQA-DPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVE 394 (714)
Q Consensus 316 la~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~ 394 (714)
+|..+...|++..|...++...+.. ...........+..+.+.....+.|..++|++.+.+--..--+ ...+....+.
T Consensus 149 ~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~D-kla~~e~ka~ 227 (700)
T KOG1156|consen 149 FAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVD-KLAFEETKAD 227 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHH-HHHHhhhHHH
Confidence 9999999999999999888776622 2333344566667777788888999999998877654332222 2233445899
Q ss_pred HHHHcCCHHHHHHHhhccccCCCCC
Q 005108 395 ALLKLHQLEDAESSLSNIPKIEPST 419 (714)
Q Consensus 395 ~~~~~g~~~~A~~~~~~al~~~p~~ 419 (714)
++++++++++|+..|..++..+|++
T Consensus 228 l~~kl~~lEeA~~~y~~Ll~rnPdn 252 (700)
T KOG1156|consen 228 LLMKLGQLEEAVKVYRRLLERNPDN 252 (700)
T ss_pred HHHHHhhHHhHHHHHHHHHhhCchh
Confidence 9999999999999999999999998
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.9e-14 Score=149.19 Aligned_cols=328 Identities=16% Similarity=0.101 Sum_probs=236.1
Q ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 005108 237 ICGGDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRL 316 (714)
Q Consensus 237 ~~p~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l 316 (714)
-.|.+.+.+...|..+...|+-++|..+...++..|+....+|..+|.++....+|++|+++|+.|+.++|+|...|..+
T Consensus 36 k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDl 115 (700)
T KOG1156|consen 36 KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDL 115 (700)
T ss_pred hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 46777888888888888888888998888888888888888888888888888889999999999998888888888888
Q ss_pred HHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcC---CCCC----HHHH
Q 005108 317 GSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAG---ADFS----PQLS 389 (714)
Q Consensus 317 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~---p~~~----~~~~ 389 (714)
+.+..++++++.....-.+.++... ..-..|+..+..+...|++..|+...+...+.. |+.. ....
T Consensus 116 slLQ~QmRd~~~~~~tr~~LLql~~-------~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~ 188 (700)
T KOG1156|consen 116 SLLQIQMRDYEGYLETRNQLLQLRP-------SQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELL 188 (700)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHhhh-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHH
Confidence 8888888888887776666554221 222446666777888899999988887776654 2211 1223
Q ss_pred HHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHH
Q 005108 390 MCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVE 469 (714)
Q Consensus 390 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 469 (714)
......+.+.|.+++|++.+..--..--+. .......+.++++++++++|+..|...+..+|++..
T Consensus 189 Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dk--------------la~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~ 254 (700)
T KOG1156|consen 189 LYQNQILIEAGSLQKALEHLLDNEKQIVDK--------------LAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLD 254 (700)
T ss_pred HHHHHHHHHcccHHHHHHHHHhhhhHHHHH--------------HHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHH
Confidence 335666777888888877766543222222 445567889999999999999999999999999988
Q ss_pred HHHHHHhHHH-H----H---HHHHH--------------HhHHhhCcCHHHHHH--------------------------
Q 005108 470 VAVLLNNVKL-V----A---RARAR--------------GNDLFKSERFTEACQ-------------------------- 501 (714)
Q Consensus 470 ~~~~l~~l~~-~----~---~~~~~--------------g~~~~~~g~~~~A~~-------------------------- 501 (714)
.+..+....- + . .+... +.....-.++.+.+.
T Consensus 255 Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~ 334 (700)
T KOG1156|consen 255 YYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPE 334 (700)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchh
Confidence 7766543211 0 0 00000 000000001111110
Q ss_pred ---HHHH-------hhcc----C--------CCC--HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005108 502 ---AYGE-------GLRF----D--------PSN--SVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAAS 557 (714)
Q Consensus 502 ---~~~~-------al~~----~--------p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 557 (714)
.+++ .+.- + |.. .+.++.++.-|...|+++.|..+++.|+...|..++.|...|.+
T Consensus 335 k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI 414 (700)
T KOG1156|consen 335 KVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARI 414 (700)
T ss_pred HhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHH
Confidence 1111 1111 0 111 34566788899999999999999999999999999999999999
Q ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHH
Q 005108 558 NSKLEKWADAVRDFEVLRRELPDDNEIA 585 (714)
Q Consensus 558 ~~~~g~~~eA~~~~~~al~~~p~~~~~~ 585 (714)
+...|++++|...++++.++|-.|.-+.
T Consensus 415 ~kH~G~l~eAa~~l~ea~elD~aDR~IN 442 (700)
T KOG1156|consen 415 FKHAGLLDEAAAWLDEAQELDTADRAIN 442 (700)
T ss_pred HHhcCChHHHHHHHHHHHhccchhHHHH
Confidence 9999999999999999999987665554
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.6e-16 Score=151.23 Aligned_cols=123 Identities=33% Similarity=0.571 Sum_probs=117.3
Q ss_pred HHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 005108 477 VKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAA 556 (714)
Q Consensus 477 l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 556 (714)
...++.++..|+-+.+.++|++|+..|.+||+++|.|+.+|+++|.+|.++|+++.|++.++.++.++|.+.++|.+||.
T Consensus 78 ~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~ 157 (304)
T KOG0553|consen 78 KALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGL 157 (304)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 34567788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhc
Q 005108 557 SNSKLEKWADAVRDFEVLRRELPDDNEIAESLFHAQVSLKKSR 599 (714)
Q Consensus 557 ~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~L~~~~~~l~~~~ 599 (714)
+|..+|++++|++.|+++|+++|++..++..|..+...+++.+
T Consensus 158 A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 158 AYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999999999999999988887654
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.68 E-value=9.1e-15 Score=158.86 Aligned_cols=322 Identities=13% Similarity=0.038 Sum_probs=253.5
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 005108 254 RKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVRLGQVENARRHL 333 (714)
Q Consensus 254 ~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~ 333 (714)
..++...|+..|-+++++++..+.+|..+|..|..-.+...|.++|++|.++|+.+..++-..+..|....+++.|....
T Consensus 470 ~rK~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~ 549 (1238)
T KOG1127|consen 470 MRKNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEIC 549 (1238)
T ss_pred hhhhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHH
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999885
Q ss_pred HhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHhhccc
Q 005108 334 CLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIP 413 (714)
Q Consensus 334 ~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 413 (714)
-.+.+. .+. ......+..++-.|.+.++...|+..|+.++..+|. +...|..+|.+|...|++..|++.|.++.
T Consensus 550 l~~~qk-a~a----~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs 623 (1238)
T KOG1127|consen 550 LRAAQK-APA----FACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKAS 623 (1238)
T ss_pred HHHhhh-chH----HHHHhhhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhH
Confidence 444331 111 122344555788888999999999999999999997 46677789999999999999999999999
Q ss_pred cCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCC--------------------------
Q 005108 414 KIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRN-------------------------- 467 (714)
Q Consensus 414 ~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------------------------- 467 (714)
.++|.+ .+..+..+.+....|+|.+|+..+...+......
T Consensus 624 ~LrP~s--------------~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~k 689 (1238)
T KOG1127|consen 624 LLRPLS--------------KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKK 689 (1238)
T ss_pred hcCcHh--------------HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhh
Confidence 999998 6677777777777777777777666544321111
Q ss_pred -----------------------HHHHHHHHhH---------------------H-------------------------
Q 005108 468 -----------------------VEVAVLLNNV---------------------K------------------------- 478 (714)
Q Consensus 468 -----------------------~~~~~~l~~l---------------------~------------------------- 478 (714)
...|..+... .
T Consensus 690 avd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hl 769 (1238)
T KOG1127|consen 690 AVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHL 769 (1238)
T ss_pred hhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHH
Confidence 0111110000 0
Q ss_pred ----HHHHHHHHHhHHhh--------CcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Q 005108 479 ----LVARARARGNDLFK--------SERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPN 546 (714)
Q Consensus 479 ----~~~~~~~~g~~~~~--------~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 546 (714)
....+.++|..|+. +.+-..|+.++.++++++.++...|..||.+ ...|++.-|..+|-+.+...|.
T Consensus 770 sl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~ 848 (1238)
T KOG1127|consen 770 SLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPT 848 (1238)
T ss_pred HHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhcccc
Confidence 00113345555444 2233578999999999999999999999988 6668999999999999999999
Q ss_pred CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Q 005108 547 YTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAESLFHAQVSLK 596 (714)
Q Consensus 547 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~L~~~~~~l~ 596 (714)
....|.++|.++.+..+++.|...|.++..++|.|...+.....+....+
T Consensus 849 ~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG 898 (1238)
T KOG1127|consen 849 CHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVG 898 (1238)
T ss_pred chhheeccceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHH
Confidence 99999999999999999999999999999999999776655544444433
|
|
| >cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.5e-16 Score=133.94 Aligned_cols=97 Identities=19% Similarity=0.304 Sum_probs=88.7
Q ss_pred ehhhhHHhhhccCCCceEEEeecCCCccccccchHHHHHHhhCC--CcEEEEEecccCcchhhhCCccccceEEEEeCCe
Q 005108 615 VSSLEQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYP--SINFLKVDIDESPGVAHAENVRIVPTFKIYKNGS 692 (714)
Q Consensus 615 i~~~e~~~~~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~--~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~ 692 (714)
+.+.++|..++...++++|+||++||++|+.+.|.++.+..+++ .+.|+.+|+| .++++++|+|+++||+++|++|+
T Consensus 4 i~~~~~~~~~i~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~~~~~~~~~v~~~Pt~~~~~~g~ 82 (102)
T cd02948 4 INNQEEWEELLSNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-TIDTLKRYRGKCEPTFLFYKNGE 82 (102)
T ss_pred ccCHHHHHHHHccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-CHHHHHHcCCCcCcEEEEEECCE
Confidence 45677888888888899999999999999999999999999986 3789999999 78899999999999999999999
Q ss_pred EEEEEcCCCHHHHHHHHhhh
Q 005108 693 RMKEIVCPSRDMLEHSVRHY 712 (714)
Q Consensus 693 ~~~~~~g~~~~~l~~~~~~~ 712 (714)
++.++.|.+.+.|.++|+++
T Consensus 83 ~~~~~~G~~~~~~~~~i~~~ 102 (102)
T cd02948 83 LVAVIRGANAPLLNKTITEL 102 (102)
T ss_pred EEEEEecCChHHHHHHHhhC
Confidence 99999999999999998763
|
Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which |
| >KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.9e-16 Score=146.27 Aligned_cols=102 Identities=35% Similarity=0.595 Sum_probs=94.4
Q ss_pred eeeehhhhHHhhhccCCC--ceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCcchhhhCCccccceEEEEe
Q 005108 612 VEEVSSLEQFRAAVSLPG--VSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAHAENVRIVPTFKIYK 689 (714)
Q Consensus 612 ~~~i~~~e~~~~~i~~~~--~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~ 689 (714)
+..+.+...|+..+...+ .++|+|++.||++|+.|.|.+..|..+||...|++||||++...|..+||..+|||++|+
T Consensus 3 Vi~v~~d~df~~~ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~aVFlkVdVd~c~~taa~~gV~amPTFiff~ 82 (288)
T KOG0908|consen 3 VIVVNSDSDFQRELSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYPGAVFLKVDVDECRGTAATNGVNAMPTFIFFR 82 (288)
T ss_pred eEEecCcHHHHHhhhccCceEEEEEEEecccchHHhhhhHHHHhhhhCcccEEEEEeHHHhhchhhhcCcccCceEEEEe
Confidence 345667778888776655 899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEcCCCHHHHHHHHhhhc
Q 005108 690 NGSRMKEIVCPSRDMLEHSVRHYS 713 (714)
Q Consensus 690 ~G~~~~~~~g~~~~~l~~~~~~~~ 713 (714)
||.+++++.|.+..-|++.|.+|.
T Consensus 83 ng~kid~~qGAd~~gLe~kv~~~~ 106 (288)
T KOG0908|consen 83 NGVKIDQIQGADASGLEEKVAKYA 106 (288)
T ss_pred cCeEeeeecCCCHHHHHHHHHHHh
Confidence 999999999999999999999875
|
|
| >PLN00410 U5 snRNP protein, DIM1 family; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.7e-16 Score=137.33 Aligned_cols=99 Identities=14% Similarity=0.112 Sum_probs=85.6
Q ss_pred eehhhhHHhhhcc--CCCceEEEeecCCCccccccchHHHHHHhhCCC-cEEEEEecccCcchhhhCCccccceEE-EEe
Q 005108 614 EVSSLEQFRAAVS--LPGVSVVHFKSASNLHCKQISPYVETLCGRYPS-INFLKVDIDESPGVAHAENVRIVPTFK-IYK 689 (714)
Q Consensus 614 ~i~~~e~~~~~i~--~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~-~~~~~vd~d~~~~l~~~~~v~~~Pt~~-~~~ 689 (714)
.+.+.+.+.+.+. ..++++++|+++||++|+.+.|.|+++++++++ +.|++||+|+.+++++.|+|++.||++ +||
T Consensus 7 ~l~s~~e~d~~I~~~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~dla~~y~I~~~~t~~~ffk 86 (142)
T PLN00410 7 HLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPCTVMFFFR 86 (142)
T ss_pred hhCCHHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCCHHHHHHcCccCCCcEEEEEE
Confidence 3455667777663 567999999999999999999999999999998 777999999999999999999787665 889
Q ss_pred CCe-EEEEEcC--------C-CHHHHHHHHhhh
Q 005108 690 NGS-RMKEIVC--------P-SRDMLEHSVRHY 712 (714)
Q Consensus 690 ~G~-~~~~~~g--------~-~~~~l~~~~~~~ 712 (714)
+|+ .+.+..| . +.++|.+.|+.+
T Consensus 87 ~g~~~vd~~tG~~~k~~~~~~~k~~l~~~i~~~ 119 (142)
T PLN00410 87 NKHIMIDLGTGNNNKINWALKDKQEFIDIVETV 119 (142)
T ss_pred CCeEEEEEecccccccccccCCHHHHHHHHHHH
Confidence 999 8999999 5 888888887753
|
|
| >cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO | Back alignment and domain information |
|---|
Probab=99.65 E-value=4e-16 Score=130.63 Aligned_cols=88 Identities=11% Similarity=0.129 Sum_probs=80.7
Q ss_pred hHHhhhccCCCceEEEeecCC--CccccccchHHHHHHhhCCC-cEEEEEecccCcchhhhCCccccceEEEEeCCeEEE
Q 005108 619 EQFRAAVSLPGVSVVHFKSAS--NLHCKQISPYVETLCGRYPS-INFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMK 695 (714)
Q Consensus 619 e~~~~~i~~~~~~vv~f~a~~--c~~C~~~~p~l~~l~~~~~~-~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~ 695 (714)
..|++.+..++.+++.|++.| |++|+.+.|.++++.++|++ +.|++||+|+.++++..|+|+++||+++|+||+.+.
T Consensus 18 ~~~~~~~~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~~la~~f~V~sIPTli~fkdGk~v~ 97 (111)
T cd02965 18 ATLDDWLAAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQALAARFGVLRTPALLFFRDGRYVG 97 (111)
T ss_pred ccHHHHHhCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCHHHHHHcCCCcCCEEEEEECCEEEE
Confidence 455566677889999999997 99999999999999999987 789999999999999999999999999999999999
Q ss_pred EEcCC-CHHHHH
Q 005108 696 EIVCP-SRDMLE 706 (714)
Q Consensus 696 ~~~g~-~~~~l~ 706 (714)
++.|. +.+++.
T Consensus 98 ~~~G~~~~~e~~ 109 (111)
T cd02965 98 VLAGIRDWDEYV 109 (111)
T ss_pred EEeCccCHHHHh
Confidence 99999 887764
|
They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway. |
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.65 E-value=2e-12 Score=134.24 Aligned_cols=331 Identities=14% Similarity=0.100 Sum_probs=234.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-------------------
Q 005108 246 KRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLD------------------- 306 (714)
Q Consensus 246 ~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------------------- 306 (714)
+..+.++|+.++.++|+..++ -.++.+..+....|.+++++|+|++|+..|+..++-+
T Consensus 83 fEKAYc~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l 159 (652)
T KOG2376|consen 83 FEKAYCEYRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL 159 (652)
T ss_pred HHHHHHHHHcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh
Confidence 688999999999999999998 4566677788999999999999999999999885432
Q ss_pred -----------CC-cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC-------CCCh-HHHHHHHHHHHHHHHhHHHHHcCC
Q 005108 307 -----------PN-YWRAHQRLGSLLVRLGQVENARRHLCLSGQ-------QADP-TEVHRLQVVEKHLSKCTDARKVGD 366 (714)
Q Consensus 307 -----------p~-~~~a~~~la~~~~~~g~~~~A~~~~~~al~-------~~~~-~~~~~l~~~~~~~~~a~~~~~~g~ 366 (714)
|. ..+.+++.|.++...|+|.+|++.++++++ ..+. ++....+.-.....++.++...|+
T Consensus 160 ~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gq 239 (652)
T KOG2376|consen 160 QVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQ 239 (652)
T ss_pred hHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcc
Confidence 22 356789999999999999999999999922 2222 233333334456778888999999
Q ss_pred HHHHHHHHHHHHHcCCCCCHH------------------------------------------------HHHHHHHHHHH
Q 005108 367 WKSALREGDAAIAAGADFSPQ------------------------------------------------LSMCRVEALLK 398 (714)
Q Consensus 367 ~~~Al~~~~~al~~~p~~~~~------------------------------------------------~~~~la~~~~~ 398 (714)
.++|...|...++.++...+. ++.+.+.+.+.
T Consensus 240 t~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~ 319 (652)
T KOG2376|consen 240 TAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALF 319 (652)
T ss_pred hHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999887643311 12223333333
Q ss_pred cCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHH-HHHHHHhH
Q 005108 399 LHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVE-VAVLLNNV 477 (714)
Q Consensus 399 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~l~~l 477 (714)
.+.-+.+.+.........|.. ...+. .+.....+...+.+|++++....+-+|.+.. +...
T Consensus 320 tnk~~q~r~~~a~lp~~~p~~-------------~~~~l-l~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~---- 381 (652)
T KOG2376|consen 320 TNKMDQVRELSASLPGMSPES-------------LFPIL-LQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLL---- 381 (652)
T ss_pred hhhHHHHHHHHHhCCccCchH-------------HHHHH-HHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHH----
Confidence 444444444444444444433 01122 2222333333788999999999998888833 3332
Q ss_pred HHHHHHHHHHhHHhhCcCHHHHHHHHH--------HhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh------
Q 005108 478 KLVARARARGNDLFKSERFTEACQAYG--------EGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLI------ 543 (714)
Q Consensus 478 ~~~~~~~~~g~~~~~~g~~~~A~~~~~--------~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------ 543 (714)
++...+.+|+++.|++.+. ..++.. ..+.+-..+-..|++.++-+-|...+.+++.-
T Consensus 382 --------~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~-~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t 452 (652)
T KOG2376|consen 382 --------RAQLKISQGNPEVALEILSLFLESWKSSILEAK-HLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQT 452 (652)
T ss_pred --------HHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhc-cChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcc
Confidence 4888999999999999998 333332 23555566666777777766666666666652
Q ss_pred -CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhcccccccc
Q 005108 544 -QPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAESLFHAQVSLKKSRGEEVYNM 606 (714)
Q Consensus 544 -~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~L~~~~~~l~~~~~~~~~~~ 606 (714)
.+..-..+..++....+.|+-++|...++++++.+|++.++.-.+.-++..+...+.+++.+.
T Consensus 453 ~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~d~eka~~l~k~ 516 (652)
T KOG2376|consen 453 GSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARLDPEKAESLSKK 516 (652)
T ss_pred cchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhcCHHHHHHHhhc
Confidence 222234455667777888999999999999999999999999999888888877766665543
|
|
| >cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif | Back alignment and domain information |
|---|
Probab=99.65 E-value=5.7e-16 Score=133.75 Aligned_cols=91 Identities=27% Similarity=0.456 Sum_probs=85.2
Q ss_pred cceeeehhhhHHhhhccCCCceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCcchhhhCCccccceEEEEe
Q 005108 610 GEVEEVSSLEQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAHAENVRIVPTFKIYK 689 (714)
Q Consensus 610 ~~~~~i~~~e~~~~~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~ 689 (714)
|.+..+.+.++|.+.+...+.++|+||++||++|+.+.|.++++..+++++.|++||+++.++++++|+|..+||+++|+
T Consensus 4 g~v~~i~~~~~~~~~i~~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~i~f~~Vd~~~~~~l~~~~~v~~vPt~l~fk 83 (113)
T cd02989 4 GKYREVSDEKEFFEIVKSSERVVCHFYHPEFFRCKIMDKHLEILAKKHLETKFIKVNAEKAPFLVEKLNIKVLPTVILFK 83 (113)
T ss_pred CCeEEeCCHHHHHHHHhCCCcEEEEEECCCCccHHHHHHHHHHHHHHcCCCEEEEEEcccCHHHHHHCCCccCCEEEEEE
Confidence 35667778788999988889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEcCC
Q 005108 690 NGSRMKEIVCP 700 (714)
Q Consensus 690 ~G~~~~~~~g~ 700 (714)
+|+.+.++.|.
T Consensus 84 ~G~~v~~~~g~ 94 (113)
T cd02989 84 NGKTVDRIVGF 94 (113)
T ss_pred CCEEEEEEECc
Confidence 99999998776
|
The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit. |
| >cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.7e-15 Score=141.07 Aligned_cols=103 Identities=25% Similarity=0.422 Sum_probs=89.4
Q ss_pred cceeeehhhhHHhhhccCC---CceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCcchhhhCCccccceEE
Q 005108 610 GEVEEVSSLEQFRAAVSLP---GVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAHAENVRIVPTFK 686 (714)
Q Consensus 610 ~~~~~i~~~e~~~~~i~~~---~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~ 686 (714)
+.+..+...+.|...+... .++||+||++||++|+.+.|.|..|+.+|+.+.|++||+++. .++..|+|+.+|||+
T Consensus 62 g~v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d~~-~l~~~f~v~~vPTll 140 (175)
T cd02987 62 GKVYELDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYPAVKFCKIRASAT-GASDEFDTDALPALL 140 (175)
T ss_pred CeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCchHHHHHHHHHHHHHHCCCeEEEEEeccch-hhHHhCCCCCCCEEE
Confidence 4667777767777777543 389999999999999999999999999999999999999987 899999999999999
Q ss_pred EEeCCeEEEEEcCC--------CHHHHHHHHhhhc
Q 005108 687 IYKNGSRMKEIVCP--------SRDMLEHSVRHYS 713 (714)
Q Consensus 687 ~~~~G~~~~~~~g~--------~~~~l~~~~~~~~ 713 (714)
+|++|+.+.+++|+ +.+.|+.+|.+++
T Consensus 141 lyk~G~~v~~~vG~~~~~g~~f~~~~le~~L~~~g 175 (175)
T cd02987 141 VYKGGELIGNFVRVTEDLGEDFDAEDLESFLVEYG 175 (175)
T ss_pred EEECCEEEEEEechHHhcCCCCCHHHHHHHHHhcC
Confidence 99999999999876 3477777777653
|
It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain. |
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.9e-13 Score=146.36 Aligned_cols=315 Identities=17% Similarity=0.103 Sum_probs=225.3
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 005108 241 DAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLL 320 (714)
Q Consensus 241 ~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 320 (714)
..+.+.....++...|++++|++++++....-.+...++-.+|.++..+|++++|...|...|+.+|++...|..+..+.
T Consensus 3 ~SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~ 82 (517)
T PF12569_consen 3 HSELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEAL 82 (517)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Confidence 34677788899999999999999999998888889999999999999999999999999999999999999999999888
Q ss_pred HHcC-----CHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHH-HHHHHHHHHHcCCCCCHHHHHHHHH
Q 005108 321 VRLG-----QVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKS-ALREGDAAIAAGADFSPQLSMCRVE 394 (714)
Q Consensus 321 ~~~g-----~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~-Al~~~~~al~~~p~~~~~~~~~la~ 394 (714)
.... +.+.-...|++.....+..... ..+... +..-..+.. +..++...+..+ .+.++..+-.
T Consensus 83 g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~--~rl~L~------~~~g~~F~~~~~~yl~~~l~Kg---vPslF~~lk~ 151 (517)
T PF12569_consen 83 GLQLQLSDEDVEKLLELYDELAEKYPRSDAP--RRLPLD------FLEGDEFKERLDEYLRPQLRKG---VPSLFSNLKP 151 (517)
T ss_pred hhhcccccccHHHHHHHHHHHHHhCccccch--hHhhcc------cCCHHHHHHHHHHHHHHHHhcC---CchHHHHHHH
Confidence 4443 4556666676654422211110 000000 111112322 233444455443 4455555555
Q ss_pred HHHHcCCHHHHHHHhhccc---cCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHH
Q 005108 395 ALLKLHQLEDAESSLSNIP---KIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVA 471 (714)
Q Consensus 395 ~~~~~g~~~~A~~~~~~al---~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 471 (714)
+|....+.+-...++.... +....................++++.+++.|...|++++|+++++++++..|..++.+
T Consensus 152 Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely 231 (517)
T PF12569_consen 152 LYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELY 231 (517)
T ss_pred HHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 5554433333333333222 1110000000000000111245779999999999999999999999999999999988
Q ss_pred HHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC--CC--
Q 005108 472 VLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQP--NY-- 547 (714)
Q Consensus 472 ~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~-- 547 (714)
+.. |.++...|++++|.++++.+-.++..|-.+....+..+.+.|+.++|.+.+..-.+.+- ..
T Consensus 232 ~~K------------arilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L 299 (517)
T PF12569_consen 232 MTK------------ARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNL 299 (517)
T ss_pred HHH------------HHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCH
Confidence 765 99999999999999999999999999999999999999999999999999988765442 11
Q ss_pred -----HHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Q 005108 548 -----TKALLRRAASNSKLEKWADAVRDFEVLRREL 578 (714)
Q Consensus 548 -----~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 578 (714)
.+.....|.+|.+.|++..|++.|..+.+..
T Consensus 300 ~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f 335 (517)
T PF12569_consen 300 NDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHF 335 (517)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 2344667999999999999999999887753
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=5.1e-15 Score=134.36 Aligned_cols=129 Identities=12% Similarity=0.145 Sum_probs=120.1
Q ss_pred HHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHH
Q 005108 454 VTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERS 533 (714)
Q Consensus 454 ~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 533 (714)
..+|+++++++|++ +.. +|.++...|++++|+.+|++++.++|.+..+|+.+|.++..+|++++|
T Consensus 13 ~~~~~~al~~~p~~---~~~------------~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A 77 (144)
T PRK15359 13 EDILKQLLSVDPET---VYA------------SGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTA 77 (144)
T ss_pred HHHHHHHHHcCHHH---HHH------------HHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHH
Confidence 46789999999985 222 389999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhh
Q 005108 534 VEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAESLFHAQVSLKK 597 (714)
Q Consensus 534 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~L~~~~~~l~~ 597 (714)
+..|+++++++|+++.+++++|.++..+|++++|+..|++++++.|++++.+..+..++..+..
T Consensus 78 ~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l~~ 141 (144)
T PRK15359 78 INFYGHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMVDT 141 (144)
T ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999888877653
|
|
| >cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.3e-15 Score=131.15 Aligned_cols=95 Identities=14% Similarity=0.156 Sum_probs=84.8
Q ss_pred hhhHHhhhccC-CCceEEEeecCCCcc--cc--ccchHHHHHHhhC--C-CcEEEEEecccCcchhhhCCccccceEEEE
Q 005108 617 SLEQFRAAVSL-PGVSVVHFKSASNLH--CK--QISPYVETLCGRY--P-SINFLKVDIDESPGVAHAENVRIVPTFKIY 688 (714)
Q Consensus 617 ~~e~~~~~i~~-~~~~vv~f~a~~c~~--C~--~~~p~l~~l~~~~--~-~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~ 688 (714)
+.++|.+.+.. ..++|++||+.||++ |+ ++.|.+.++.+++ . ++.|++||+|+.++||++|+|+++||+++|
T Consensus 15 t~~nF~~~v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~La~~~~I~~iPTl~lf 94 (120)
T cd03065 15 NEKNYKQVLKKYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAKVAKKLGLDEEDSIYVF 94 (120)
T ss_pred ChhhHHHHHHhCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHHHHHHcCCccccEEEEE
Confidence 34777776544 568889999999988 99 9999999999998 5 599999999999999999999999999999
Q ss_pred eCCeEEEEEcCC-CHHHHHHHHhhh
Q 005108 689 KNGSRMKEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 689 ~~G~~~~~~~g~-~~~~l~~~~~~~ 712 (714)
+||+++. +.|. +.+.|.++|+++
T Consensus 95 k~G~~v~-~~G~~~~~~l~~~l~~~ 118 (120)
T cd03065 95 KDDEVIE-YDGEFAADTLVEFLLDL 118 (120)
T ss_pred ECCEEEE-eeCCCCHHHHHHHHHHH
Confidence 9999987 9999 999999999875
|
It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2 |
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.2e-14 Score=155.93 Aligned_cols=324 Identities=13% Similarity=0.046 Sum_probs=246.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 005108 243 EELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVR 322 (714)
Q Consensus 243 ~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~ 322 (714)
..|..+|-.|.+.+++..|+..|+.+++.+|++..+|..+|.+|...|+|..|++.|.++..++|.+....+..+.+...
T Consensus 563 ~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd 642 (1238)
T KOG1127|consen 563 ENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECD 642 (1238)
T ss_pred hhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHH
Confidence 45566888888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCC-------CCCHHHHHHHHHH
Q 005108 323 LGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGA-------DFSPQLSMCRVEA 395 (714)
Q Consensus 323 ~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p-------~~~~~~~~~la~~ 395 (714)
+|+|.+|+..+...+..............+.++..+..+...|-+.+|..++++.++... ......|..++.+
T Consensus 643 ~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asda 722 (1238)
T KOG1127|consen 643 NGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDA 722 (1238)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHH
Confidence 999999999998888755555555566677777777778877877777777777765411 1122222222222
Q ss_pred H---HHcC--CH----HHHHHH-hhccccCCCCCCCc----hhhhhhhhhhhHHHHHHHHHHHHH--------hCcHHHH
Q 005108 396 L---LKLH--QL----EDAESS-LSNIPKIEPSTVSS----SQTRFFGMLSEAYTFFVRAQIEMA--------LGRFENA 453 (714)
Q Consensus 396 ~---~~~g--~~----~~A~~~-~~~al~~~p~~~~~----~~~~~~~~~~~~~~~~~la~~~~~--------~g~~~~A 453 (714)
. .... -. -.++.- ++.......++.-. ........+...+.|+++|..|+. +.+...|
T Consensus 723 c~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~A 802 (1238)
T KOG1127|consen 723 CYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTA 802 (1238)
T ss_pred HHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHH
Confidence 1 1111 00 000000 11111111111000 001111222336679999988877 2345689
Q ss_pred HHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHH
Q 005108 454 VTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERS 533 (714)
Q Consensus 454 ~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 533 (714)
+.++++++++..++...|..+ |.+ ...|++.-|.-+|-+.+..+|.....|.|+|.++.+..+++.|
T Consensus 803 i~c~KkaV~L~ann~~~WnaL------------GVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A 869 (1238)
T KOG1127|consen 803 IRCCKKAVSLCANNEGLWNAL------------GVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHA 869 (1238)
T ss_pred HHHHHHHHHHhhccHHHHHHH------------HHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHh
Confidence 999999999999999999987 666 6679999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Q 005108 534 VEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELP 579 (714)
Q Consensus 534 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p 579 (714)
...|.++..++|.+...|...+.+....|+.-++...|....++.-
T Consensus 870 ~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~ 915 (1238)
T KOG1127|consen 870 EPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCS 915 (1238)
T ss_pred hHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhc
Confidence 9999999999999999999999999999999999999988555443
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.62 E-value=5.9e-16 Score=148.84 Aligned_cols=86 Identities=24% Similarity=0.353 Sum_probs=82.0
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhCCC-cEEEEEecccCcchhhhCCccccceEEEEeCCeEEEEEcCC-CHHHH
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRYPS-INFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKEIVCP-SRDML 705 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~-~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~~~~g~-~~~~l 705 (714)
..+++|+||++||++|+++.|.|+++..+|.+ +.+++||+|+.+.++.+|||++|||++.|++|++|+.+.|. ..++|
T Consensus 43 ~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~vAaqfgiqsIPtV~af~dGqpVdgF~G~qPesql 122 (304)
T COG3118 43 EVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPMVAAQFGVQSIPTVYAFKDGQPVDGFQGAQPESQL 122 (304)
T ss_pred CCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcchhHHHHhCcCcCCeEEEeeCCcCccccCCCCcHHHH
Confidence 34899999999999999999999999999976 99999999999999999999999999999999999999999 88899
Q ss_pred HHHHhhhc
Q 005108 706 EHSVRHYS 713 (714)
Q Consensus 706 ~~~~~~~~ 713 (714)
++||+++.
T Consensus 123 r~~ld~~~ 130 (304)
T COG3118 123 RQFLDKVL 130 (304)
T ss_pred HHHHHHhc
Confidence 99999874
|
|
| >cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.9e-15 Score=131.16 Aligned_cols=89 Identities=31% Similarity=0.577 Sum_probs=79.8
Q ss_pred cceeeehhhhHHhhhccCC---CceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCcchhhhCCccccceEE
Q 005108 610 GEVEEVSSLEQFRAAVSLP---GVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAHAENVRIVPTFK 686 (714)
Q Consensus 610 ~~~~~i~~~e~~~~~i~~~---~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~ 686 (714)
+.+..+.. ++|...+... .+++|+||++||++|+.+.|.++++..+++++.|++||+++. +++++|+|.++||++
T Consensus 4 g~v~~i~~-~~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~v~f~~vd~~~~-~l~~~~~i~~~Pt~~ 81 (113)
T cd02957 4 GEVREISS-KEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYPETKFVKINAEKA-FLVNYLDIKVLPTLL 81 (113)
T ss_pred ceEEEEcH-HHHHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEEchhh-HHHHhcCCCcCCEEE
Confidence 35566666 6777766544 789999999999999999999999999999999999999999 999999999999999
Q ss_pred EEeCCeEEEEEcCC
Q 005108 687 IYKNGSRMKEIVCP 700 (714)
Q Consensus 687 ~~~~G~~~~~~~g~ 700 (714)
+|++|+.+.++.|.
T Consensus 82 ~f~~G~~v~~~~G~ 95 (113)
T cd02957 82 VYKNGELIDNIVGF 95 (113)
T ss_pred EEECCEEEEEEecH
Confidence 99999999999884
|
Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te |
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.61 E-value=5.1e-12 Score=131.29 Aligned_cols=315 Identities=15% Similarity=0.033 Sum_probs=189.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 005108 243 EELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVR 322 (714)
Q Consensus 243 ~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~ 322 (714)
..++.--+.+...++|++|+....+++...|++..+......+++++++|++|+...++-....-. ....+..|.|+++
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~-~~~~fEKAYc~Yr 91 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVI-NSFFFEKAYCEYR 91 (652)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhc-chhhHHHHHHHHH
Confidence 344444455556666666666666666666666666666666666666666666333322211111 1112455666666
Q ss_pred cCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHc----------------------
Q 005108 323 LGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAA---------------------- 380 (714)
Q Consensus 323 ~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~---------------------- 380 (714)
+++.++|+..++ .++..+.. ...-.+.+++++++|++|+..|+..++.
T Consensus 92 lnk~Dealk~~~-~~~~~~~~---------ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~ 161 (652)
T KOG2376|consen 92 LNKLDEALKTLK-GLDRLDDK---------LLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQV 161 (652)
T ss_pred cccHHHHHHHHh-cccccchH---------HHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhH
Confidence 666666666655 22222211 1112334455566666666666555432
Q ss_pred --------CCCCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCC-----CCCCCchhhhhhhhhhhHHHHHHHHHHHHHh
Q 005108 381 --------GADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIE-----PSTVSSSQTRFFGMLSEAYTFFVRAQIEMAL 447 (714)
Q Consensus 381 --------~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 447 (714)
.|....+.+++.|.++...|+|.+|++.+++++++. .++.. ..... ....-+...++.++..+
T Consensus 162 ~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~--eEeie--~el~~IrvQlayVlQ~~ 237 (652)
T KOG2376|consen 162 QLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTN--EEEIE--EELNPIRVQLAYVLQLQ 237 (652)
T ss_pred HHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccc--hhhHH--HHHHHHHHHHHHHHHHh
Confidence 344456778889999999999999999999993321 11100 01111 12244677889999999
Q ss_pred CcHHHHHHHHHHHhccCCCCHHHHHH-HHhHH------------------------------------HHHHHHHHHhHH
Q 005108 448 GRFENAVTAAEKAGQIDPRNVEVAVL-LNNVK------------------------------------LVARARARGNDL 490 (714)
Q Consensus 448 g~~~~A~~~~~~al~~~p~~~~~~~~-l~~l~------------------------------------~~~~~~~~g~~~ 490 (714)
|+.++|...|...++.++.+...... .+|+- .-.-+.+.+...
T Consensus 238 Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~ 317 (652)
T KOG2376|consen 238 GQTAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLA 317 (652)
T ss_pred cchHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999888766532222 22210 001123445555
Q ss_pred hhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHhccHHHHHH
Q 005108 491 FKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNY-TKALLRRAASNSKLEKWADAVR 569 (714)
Q Consensus 491 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~eA~~ 569 (714)
+..+.-+.+.+.....-...|....--........+...+.+|++.+....+-+|.. ..+.+.++.+...+|+++.|++
T Consensus 318 l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~ 397 (652)
T KOG2376|consen 318 LFTNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALE 397 (652)
T ss_pred HHhhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHH
Confidence 555555555555444333444433222333333344447899999999999989987 6788899999999999999999
Q ss_pred HHH
Q 005108 570 DFE 572 (714)
Q Consensus 570 ~~~ 572 (714)
.+.
T Consensus 398 il~ 400 (652)
T KOG2376|consen 398 ILS 400 (652)
T ss_pred HHH
Confidence 999
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=99.60 E-value=6.3e-14 Score=139.73 Aligned_cols=177 Identities=18% Similarity=0.163 Sum_probs=147.9
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhcc
Q 005108 384 FSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQI 463 (714)
Q Consensus 384 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 463 (714)
.....++.+|..+...|++++|+..|++++..+|.++ ....+++.+|.++...|++++|+..|+++++.
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~-----------~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~ 99 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSP-----------YAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL 99 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCch-----------hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 3466777899999999999999999999999998862 11357899999999999999999999999999
Q ss_pred CCCCHHHHHHHHhHHHHHHHHHHHhHHhhC--------cCHHHHHHHHHHhhccCCCCHHHH-----------------H
Q 005108 464 DPRNVEVAVLLNNVKLVARARARGNDLFKS--------ERFTEACQAYGEGLRFDPSNSVLY-----------------C 518 (714)
Q Consensus 464 ~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~--------g~~~~A~~~~~~al~~~p~~~~~~-----------------~ 518 (714)
.|+++.....+. .+|.+++.. |++++|++.|+++++.+|++...+ .
T Consensus 100 ~p~~~~~~~a~~---------~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~ 170 (235)
T TIGR03302 100 HPNHPDADYAYY---------LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKEL 170 (235)
T ss_pred CcCCCchHHHHH---------HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHH
Confidence 998876422221 126666655 899999999999999999985432 4
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Q 005108 519 NRAACWFKLGQWERSVEDSNQALLIQPNY---TKALLRRAASNSKLEKWADAVRDFEVLRRELPD 580 (714)
Q Consensus 519 ~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~ 580 (714)
.+|.+|.+.|++++|+..|+++++..|+. .++++.+|.++.++|++++|+.+++.+....|+
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~~ 235 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYPD 235 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 67889999999999999999999997764 589999999999999999999999988877663
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1 | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.3e-15 Score=124.75 Aligned_cols=85 Identities=18% Similarity=0.298 Sum_probs=74.1
Q ss_pred CCCceEEEeecCCCccccccchHHHHHHhhCCC-cEEEEEecccCcchhhhCCccccceEEEEeCCeEEE---------E
Q 005108 627 LPGVSVVHFKSASNLHCKQISPYVETLCGRYPS-INFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMK---------E 696 (714)
Q Consensus 627 ~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~-~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~---------~ 696 (714)
..+++|++|+++||++|+.+.|.+++++.++++ +.|++||+|+.+++++.|+|..+||+++|+||+.+. +
T Consensus 13 ~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~dva~~y~I~amPtfvffkngkh~~~d~gt~~~~k 92 (114)
T cd02986 13 AEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKVPVYTQYFDISYIPSTIFFFNGQHMKVDYGSPDHTK 92 (114)
T ss_pred CCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccccHHHHHhcCceeCcEEEEEECCcEEEEecCCCCCcE
Confidence 467999999999999999999999999999998 999999999999999999999999999999998874 3
Q ss_pred EcCC--CHHHHHHHHhh
Q 005108 697 IVCP--SRDMLEHSVRH 711 (714)
Q Consensus 697 ~~g~--~~~~l~~~~~~ 711 (714)
+.+. +++++.+.|+-
T Consensus 93 ~~~~~~~k~~~idi~e~ 109 (114)
T cd02986 93 FVGSFKTKQDFIDLIEV 109 (114)
T ss_pred EEEEcCchhHHHHHHHH
Confidence 3333 55666665543
|
Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. |
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.9e-14 Score=130.66 Aligned_cols=128 Identities=16% Similarity=0.199 Sum_probs=118.2
Q ss_pred HHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHH
Q 005108 406 ESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARA 485 (714)
Q Consensus 406 ~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~ 485 (714)
...|+++++++|++ ++.+|.++...|++++|+.+|++++.++|.+..++..+
T Consensus 13 ~~~~~~al~~~p~~-----------------~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~l----------- 64 (144)
T PRK15359 13 EDILKQLLSVDPET-----------------VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIAL----------- 64 (144)
T ss_pred HHHHHHHHHcCHHH-----------------HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHH-----------
Confidence 45677888888775 56789999999999999999999999999999999876
Q ss_pred HHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Q 005108 486 RGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLE 562 (714)
Q Consensus 486 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 562 (714)
|.++...|++++|+..|+++++++|+++.+++++|.++..+|++++|+..|++++++.|+++..+..++.+...++
T Consensus 65 -g~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l~ 140 (144)
T PRK15359 65 -AGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMVD 140 (144)
T ss_pred -HHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999988876543
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.1e-11 Score=123.64 Aligned_cols=297 Identities=15% Similarity=0.076 Sum_probs=229.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHH
Q 005108 242 AEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPN-YWRAHQRLGSLL 320 (714)
Q Consensus 242 ~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~la~~~ 320 (714)
+......|..-+..|+|.+|.+...++-+..+.-..++..-+.+--++|+++.|-.++.++-+..++ .......++.++
T Consensus 84 a~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarll 163 (400)
T COG3071 84 ARKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLL 163 (400)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHH
Confidence 4556667888889999999999999988888777778888889999999999999999999998444 466788899999
Q ss_pred HHcCCHHHHHHHHHhhcC--CCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH--
Q 005108 321 VRLGQVENARRHLCLSGQ--QADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEAL-- 396 (714)
Q Consensus 321 ~~~g~~~~A~~~~~~al~--~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~-- 396 (714)
...|+++.|.....++.. +..+... .-...+|...|+|.+.+.++.++-+.+--.++++....-.++
T Consensus 164 l~~~d~~aA~~~v~~ll~~~pr~~~vl---------rLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~g 234 (400)
T COG3071 164 LNRRDYPAARENVDQLLEMTPRHPEVL---------RLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEG 234 (400)
T ss_pred HhCCCchhHHHHHHHHHHhCcCChHHH---------HHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHH
Confidence 999999999999988876 2222221 222345888999999999999988876544443322211111
Q ss_pred --HHcCCH---HHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHH
Q 005108 397 --LKLHQL---EDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVA 471 (714)
Q Consensus 397 --~~~g~~---~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 471 (714)
.+..+- +.-..+++.....-..+ ..+...++.-+...|+.++|.+..+.+++..-+.. ..
T Consensus 235 lL~q~~~~~~~~gL~~~W~~~pr~lr~~--------------p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-L~ 299 (400)
T COG3071 235 LLQQARDDNGSEGLKTWWKNQPRKLRND--------------PELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR-LC 299 (400)
T ss_pred HHHHHhccccchHHHHHHHhccHHhhcC--------------hhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh-HH
Confidence 122222 22223444443333333 45667788889999999999999999998765544 21
Q ss_pred HHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHH
Q 005108 472 VLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKAL 551 (714)
Q Consensus 472 ~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 551 (714)
.. .-...-++...=++..++.++..|+++.++..+|..|.+.+.|.+|..+|+.+++..|+ ...+
T Consensus 300 ~~--------------~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~ 364 (400)
T COG3071 300 RL--------------IPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDY 364 (400)
T ss_pred HH--------------HhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhH
Confidence 11 12456788999999999999999999999999999999999999999999999999887 5678
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHHh
Q 005108 552 LRRAASNSKLEKWADAVRDFEVLRRE 577 (714)
Q Consensus 552 ~~la~~~~~~g~~~eA~~~~~~al~~ 577 (714)
..+|.++.++|+..+|.+.+++++-+
T Consensus 365 ~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 365 AELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 89999999999999999999998854
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.6e-13 Score=131.39 Aligned_cols=130 Identities=21% Similarity=0.236 Sum_probs=120.2
Q ss_pred hCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHH-H
Q 005108 447 LGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACW-F 525 (714)
Q Consensus 447 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~-~ 525 (714)
.++.++++..++++++.+|++.+.|..+ |.+|...|++++|+..|+++++++|+++.++..+|.++ .
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~L------------g~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~ 119 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALL------------GEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYY 119 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHH------------HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 5677899999999999999999999987 99999999999999999999999999999999999975 6
Q ss_pred HhCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005108 526 KLGQ--WERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAESL 588 (714)
Q Consensus 526 ~~g~--~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~L 588 (714)
..|+ +++|++.++++++.+|++..+++.+|.++.+.|++++|+.+|+++++++|.+.+-...+
T Consensus 120 ~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~~~i 184 (198)
T PRK10370 120 QAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNRTQLV 184 (198)
T ss_pred hcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHH
Confidence 7787 59999999999999999999999999999999999999999999999998776555444
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.8e-14 Score=140.26 Aligned_cols=326 Identities=15% Similarity=0.095 Sum_probs=211.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc------CCCcHH
Q 005108 242 AEELKRMGNELYRKGCFGEALSMYDKAISLAPRN----AAFRSNRAAALTGLGRIGEAVKECEEAVRL------DPNYWR 311 (714)
Q Consensus 242 ~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~ 311 (714)
-..+...|.-+++.|++...+.+|+.|++...++ ..+|..+|.+|+.+++|++|+++-..=+.+ .-....
T Consensus 17 CleLalEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAK 96 (639)
T KOG1130|consen 17 CLELALEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAK 96 (639)
T ss_pred HHHHHHHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhcccc
Confidence 3456678999999999999999999999998777 467888999999999999999875433221 223356
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 005108 312 AHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMC 391 (714)
Q Consensus 312 a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~ 391 (714)
.--+||..+-.+|.|++|+.+..+-+... ...-..+....++++++.+|...|+.-....--++ + .+..++
T Consensus 97 ssgNLGNtlKv~G~fdeA~~cc~rhLd~a-reLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~----g-~f~~ev--- 167 (639)
T KOG1130|consen 97 SSGNLGNTLKVKGAFDEALTCCFRHLDFA-RELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEK----G-AFNAEV--- 167 (639)
T ss_pred ccccccchhhhhcccchHHHHHHHHhHHH-HHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhc----c-cccHHH---
Confidence 67789999999999999998775543200 00011122223333333333333321100000000 0 000000
Q ss_pred HHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHH
Q 005108 392 RVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVA 471 (714)
Q Consensus 392 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 471 (714)
...++.|.++|..-+++-.. +.+......++-++|..|+.+|+|+.|+..-+.-+.+.....+-
T Consensus 168 -------~~al~~Av~fy~eNL~l~~~--------lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDr- 231 (639)
T KOG1130|consen 168 -------TSALENAVKFYMENLELSEK--------LGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDR- 231 (639)
T ss_pred -------HHHHHHHHHHHHHHHHHHHH--------hhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhH-
Confidence 00134455555444433222 23333445678889999999999999999988777654332211
Q ss_pred HHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhcc----CC--CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Q 005108 472 VLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRF----DP--SNSVLYCNRAACWFKLGQWERSVEDSNQALLIQP 545 (714)
Q Consensus 472 ~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~----~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 545 (714)
...-..+.++|+++.-.|+++.|+++|++.+.+ .. ..+...+.||..|.-..++++||.++++-+.+..
T Consensus 232 -----AaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAq 306 (639)
T KOG1130|consen 232 -----AAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQ 306 (639)
T ss_pred -----HHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 011122335699999999999999999987654 22 2356778899999999999999999998776532
Q ss_pred ------CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-----CC-CHHHHHHHHHHHHHhhh
Q 005108 546 ------NYTKALLRRAASNSKLEKWADAVRDFEVLRREL-----PD-DNEIAESLFHAQVSLKK 597 (714)
Q Consensus 546 ------~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-----p~-~~~~~~~L~~~~~~l~~ 597 (714)
....+++.||.+|-.+|..++|+.+.++.+++. +. ....+..|......++.
T Consensus 307 eL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~ev~D~sgelTar~Nlsdl~~~lG~ 370 (639)
T KOG1130|consen 307 ELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSSLEVNDTSGELTARDNLSDLILELGQ 370 (639)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCcchhhhhhhhhHHHHHHhCC
Confidence 245889999999999999999999998887652 21 22344555555444443
|
|
| >PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms | Back alignment and domain information |
|---|
Probab=99.58 E-value=6.5e-15 Score=126.13 Aligned_cols=96 Identities=28% Similarity=0.419 Sum_probs=89.4
Q ss_pred hhhHHhhhccC-CCceEEEeecCCCccccccchHHHHHHhhCC-CcEEEEEecccCcchhhhCCccccceEEEEeCCeEE
Q 005108 617 SLEQFRAAVSL-PGVSVVHFKSASNLHCKQISPYVETLCGRYP-SINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRM 694 (714)
Q Consensus 617 ~~e~~~~~i~~-~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~-~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~ 694 (714)
+.+.|...+.. .+.++|.|+++||++|+.+.|.+.++...++ ++.|+.||+++...+++.|+|.++||+++|++|+.+
T Consensus 5 t~~~f~~~i~~~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~g~~~ 84 (103)
T PF00085_consen 5 TDENFEKFINESDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENKELCKKYGVKSVPTIIFFKNGKEV 84 (103)
T ss_dssp STTTHHHHHTTTSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSHHHHHHTTCSSSSEEEEEETTEEE
T ss_pred CHHHHHHHHHccCCCEEEEEeCCCCCccccccceecccccccccccccchhhhhccchhhhccCCCCCCEEEEEECCcEE
Confidence 34567777765 7899999999999999999999999999998 799999999999999999999999999999999999
Q ss_pred EEEcCC-CHHHHHHHHhhh
Q 005108 695 KEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 695 ~~~~g~-~~~~l~~~~~~~ 712 (714)
.++.|. +.+.|.++|+++
T Consensus 85 ~~~~g~~~~~~l~~~i~~~ 103 (103)
T PF00085_consen 85 KRYNGPRNAESLIEFIEKH 103 (103)
T ss_dssp EEEESSSSHHHHHHHHHHH
T ss_pred EEEECCCCHHHHHHHHHcC
Confidence 999999 999999999875
|
Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A .... |
| >cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox | Back alignment and domain information |
|---|
Probab=99.57 E-value=6.1e-15 Score=126.25 Aligned_cols=91 Identities=14% Similarity=0.169 Sum_probs=81.4
Q ss_pred hhHHhhh---ccCCCceEEEeecCCCccccccchHHHHHHhhCCC-cEEEEEecccCcchh-hhCCccccceEEEEeCCe
Q 005108 618 LEQFRAA---VSLPGVSVVHFKSASNLHCKQISPYVETLCGRYPS-INFLKVDIDESPGVA-HAENVRIVPTFKIYKNGS 692 (714)
Q Consensus 618 ~e~~~~~---i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~-~~~~~vd~d~~~~l~-~~~~v~~~Pt~~~~~~G~ 692 (714)
.++|.++ +....+++|.||++||++|+.+.|.++++.+.+.+ +.|++||+++.+.++ +.|+|.++||+++|++|+
T Consensus 16 ~~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~~l~~~~~~I~~~PTl~lf~~g~ 95 (113)
T cd03006 16 KGQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQGKCRKQKHFFYFPVIHLYYRSR 95 (113)
T ss_pred hhhhHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCChHHHHHhcCCcccCEEEEEECCc
Confidence 3456654 56788999999999999999999999999999876 889999999999999 589999999999999999
Q ss_pred EEEEEcCC-CHHHHHHH
Q 005108 693 RMKEIVCP-SRDMLEHS 708 (714)
Q Consensus 693 ~~~~~~g~-~~~~l~~~ 708 (714)
...++.|. +.+.|..+
T Consensus 96 ~~~~y~G~~~~~~i~~~ 112 (113)
T cd03006 96 GPIEYKGPMRAPYMEKF 112 (113)
T ss_pred cceEEeCCCCHHHHHhh
Confidence 99999999 88888765
|
ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44. |
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.9e-11 Score=123.44 Aligned_cols=353 Identities=14% Similarity=0.031 Sum_probs=254.6
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 005108 241 DAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLL 320 (714)
Q Consensus 241 ~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 320 (714)
+...|...|+--..+++++.|...|++||..+-.+...|...+.+-++..+...|...+++|+.+-|.-...|+.+..+-
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymE 151 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYME 151 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 66888899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHhhcC-CCChHHHHHHHHHHH------------------------HHHHhHHHHHcCCHHHHHHHHH
Q 005108 321 VRLGQVENARRHLCLSGQ-QADPTEVHRLQVVEK------------------------HLSKCTDARKVGDWKSALREGD 375 (714)
Q Consensus 321 ~~~g~~~~A~~~~~~al~-~~~~~~~~~l~~~~~------------------------~~~~a~~~~~~g~~~~Al~~~~ 375 (714)
..+|+...|.+.|++.+. .++...+......+. ++.-+.--.+.|+..-|...|+
T Consensus 152 E~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~Vye 231 (677)
T KOG1915|consen 152 EMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYE 231 (677)
T ss_pred HHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 999999999999999988 666666654443332 3333444457788888889999
Q ss_pred HHHHcCCCC--CHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchh-----------------------------
Q 005108 376 AAIAAGADF--SPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQ----------------------------- 424 (714)
Q Consensus 376 ~al~~~p~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~----------------------------- 424 (714)
+++..-.+. ...++...|..-..+..++.|.-+|+-+++.-|.+-....
T Consensus 232 rAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qY 311 (677)
T KOG1915|consen 232 RAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQY 311 (677)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHH
Confidence 888764432 2334445566666778888999889888888777621110
Q ss_pred -hhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHH--HHHHHHhHHHHHHHHHH-HhHHhhCcCHHHHH
Q 005108 425 -TRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVE--VAVLLNNVKLVARARAR-GNDLFKSERFTEAC 500 (714)
Q Consensus 425 -~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~--~~~~l~~l~~~~~~~~~-g~~~~~~g~~~~A~ 500 (714)
..+...-.+..+|+..-.+....|+.+.-.+.|++|+..-|-..+ .|.-+.-+ +.+. -..-....+.+.+.
T Consensus 312 E~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYL-----WinYalyeEle~ed~ertr 386 (677)
T KOG1915|consen 312 EKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYL-----WINYALYEELEAEDVERTR 386 (677)
T ss_pred HHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHH-----HHHHHHHHHHHhhhHHHHH
Confidence 001111123456777777777778888888888888876665322 11111000 0000 11223456777888
Q ss_pred HHHHHhhccCCCC----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 005108 501 QAYGEGLRFDPSN----SVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRR 576 (714)
Q Consensus 501 ~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~ 576 (714)
+.|+.+|++-|.. +.+|...|....++.+...|.+.+-.|+-..|.+ ..+-....+-.++++++.....|++.++
T Consensus 387 ~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~-KlFk~YIelElqL~efDRcRkLYEkfle 465 (677)
T KOG1915|consen 387 QVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKD-KLFKGYIELELQLREFDRCRKLYEKFLE 465 (677)
T ss_pred HHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCch-hHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 8888888877764 5677777777777777777777777777777764 4455555666677777777777777777
Q ss_pred hCCCCHHHHHHHHHHHHHhhhhc
Q 005108 577 ELPDDNEIAESLFHAQVSLKKSR 599 (714)
Q Consensus 577 ~~p~~~~~~~~L~~~~~~l~~~~ 599 (714)
..|.+-.++...+.....|+..+
T Consensus 466 ~~Pe~c~~W~kyaElE~~Lgdtd 488 (677)
T KOG1915|consen 466 FSPENCYAWSKYAELETSLGDTD 488 (677)
T ss_pred cChHhhHHHHHHHHHHHHhhhHH
Confidence 77777777777776666666543
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.57 E-value=4e-12 Score=123.86 Aligned_cols=327 Identities=14% Similarity=0.088 Sum_probs=198.0
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHH
Q 005108 252 LYRKGCFGEALSMYDKAISLAPRNA-AFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVRLGQVENAR 330 (714)
Q Consensus 252 ~~~~g~~~~Al~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~ 330 (714)
++...+|..|+.+++-.+..+.... ..-..+|.|++.+|+|++|+..|+-+.+.+.-+.+.+.+||.+++.+|+|.+|.
T Consensus 32 fls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~ 111 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAK 111 (557)
T ss_pred HHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHH
Confidence 4456667777777766665443332 455566777777777777777777766655556667777777777777777776
Q ss_pred HHHHhhcCCC--------------ChHHHH-----HHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 005108 331 RHLCLSGQQA--------------DPTEVH-----RLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMC 391 (714)
Q Consensus 331 ~~~~~al~~~--------------~~~~~~-----~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~ 391 (714)
..-.++-+.+ +...+. .-...+..+.++.+.+..-.|++|++.|.+++.-+|+. ..+-..
T Consensus 112 ~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey-~alNVy 190 (557)
T KOG3785|consen 112 SIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEY-IALNVY 190 (557)
T ss_pred HHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhh-hhhHHH
Confidence 6665553311 111111 11234566777888888889999999999999988874 344455
Q ss_pred HHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhc-cCCCCHH-
Q 005108 392 RVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQ-IDPRNVE- 469 (714)
Q Consensus 392 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~p~~~~- 469 (714)
+|.||.++.-++-+.+.+.-.+...|+. ..+...++..++++=+-..|....+.... .+...+.
T Consensus 191 ~ALCyyKlDYydvsqevl~vYL~q~pdS--------------tiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~ 256 (557)
T KOG3785|consen 191 MALCYYKLDYYDVSQEVLKVYLRQFPDS--------------TIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFI 256 (557)
T ss_pred HHHHHHhcchhhhHHHHHHHHHHhCCCc--------------HHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhH
Confidence 8999999999999999999999999987 44555555555553222222222222111 1111111
Q ss_pred ----------------HHHHHHhH-H-HHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCC--
Q 005108 470 ----------------VAVLLNNV-K-LVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQ-- 529 (714)
Q Consensus 470 ----------------~~~~l~~l-~-~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-- 529 (714)
++..+-.+ + ..+.-.++...|.++++.++|+.+++. ++|..+.-|...|.++..+|+
T Consensus 257 ~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kd---l~PttP~EyilKgvv~aalGQe~ 333 (557)
T KOG3785|consen 257 EYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKD---LDPTTPYEYILKGVVFAALGQET 333 (557)
T ss_pred HHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhh---cCCCChHHHHHHHHHHHHhhhhc
Confidence 11111000 0 112223557778899999999988764 567666666666666665554
Q ss_pred -----------------------------------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHH
Q 005108 530 -----------------------------------------WERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAV 568 (714)
Q Consensus 530 -----------------------------------------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~ 568 (714)
+++.+.+++..-...-++....+++|+++...|++.+|.
T Consensus 334 gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaE 413 (557)
T KOG3785|consen 334 GSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAE 413 (557)
T ss_pred CcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHH
Confidence 334333333333333444556678888888888888888
Q ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHhh
Q 005108 569 RDFEVLRREL-PDDNEIAESLFHAQVSLK 596 (714)
Q Consensus 569 ~~~~~al~~~-p~~~~~~~~L~~~~~~l~ 596 (714)
+.|-+.-..+ .++-.....|++++..-+
T Consensus 414 elf~~is~~~ikn~~~Y~s~LArCyi~nk 442 (557)
T KOG3785|consen 414 ELFIRISGPEIKNKILYKSMLARCYIRNK 442 (557)
T ss_pred HHHhhhcChhhhhhHHHHHHHHHHHHhcC
Confidence 8877664433 223334455666665543
|
|
| >PTZ00051 thioredoxin; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=9e-15 Score=123.88 Aligned_cols=95 Identities=33% Similarity=0.567 Sum_probs=87.3
Q ss_pred eeehhhhHHhhhccCCCceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCcchhhhCCccccceEEEEeCCe
Q 005108 613 EEVSSLEQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAHAENVRIVPTFKIYKNGS 692 (714)
Q Consensus 613 ~~i~~~e~~~~~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~ 692 (714)
.++.+.+.+..++.....++++||++||++|+.+.|.++++..+++++.|+.+|+++...++..|+|+++||+++|++|+
T Consensus 3 ~~i~~~~~~~~~~~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~ 82 (98)
T PTZ00051 3 HIVTSQAEFESTLSQNELVIVDFYAEWCGPCKRIAPFYEECSKEYTKMVFVKVDVDELSEVAEKENITSMPTFKVFKNGS 82 (98)
T ss_pred EEecCHHHHHHHHhcCCeEEEEEECCCCHHHHHHhHHHHHHHHHcCCcEEEEEECcchHHHHHHCCCceeeEEEEEeCCe
Confidence 34566678888888888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEcCCCHHHHHH
Q 005108 693 RMKEIVCPSRDMLEH 707 (714)
Q Consensus 693 ~~~~~~g~~~~~l~~ 707 (714)
++.++.|...++|++
T Consensus 83 ~~~~~~G~~~~~~~~ 97 (98)
T PTZ00051 83 VVDTLLGANDEALKQ 97 (98)
T ss_pred EEEEEeCCCHHHhhc
Confidence 999999998787764
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.6e-13 Score=150.74 Aligned_cols=143 Identities=15% Similarity=0.092 Sum_probs=83.1
Q ss_pred HHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHH
Q 005108 390 MCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVE 469 (714)
Q Consensus 390 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 469 (714)
..+|.||.++|+.++|...|+++++.+|++ +.++.++|..|... +.++|++++.+|+..
T Consensus 120 ~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n--------------~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~------ 178 (906)
T PRK14720 120 RTLAEAYAKLNENKKLKGVWERLVKADRDN--------------PEIVKKLATSYEEE-DKEKAITYLKKAIYR------ 178 (906)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcCccc--------------HHHHHHHHHHHHHh-hHHHHHHHHHHHHHH------
Confidence 335555555555555555555555555555 55555555555555 555555555555432
Q ss_pred HHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCC--------------------HHHHHHHHHHHHHhCC
Q 005108 470 VAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSN--------------------SVLYCNRAACWFKLGQ 529 (714)
Q Consensus 470 ~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~--------------------~~~~~~la~~~~~~g~ 529 (714)
++..++|.++.+++.+.+..+|++ ..++.-+=.+|.+.++
T Consensus 179 --------------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~ 238 (906)
T PRK14720 179 --------------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALED 238 (906)
T ss_pred --------------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhh
Confidence 222334444444444444444443 2333344467778888
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 005108 530 WERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRR 576 (714)
Q Consensus 530 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~ 576 (714)
|++++..++.+++++|.+..+...++.+|. ++|.. ...|+.+++
T Consensus 239 ~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~--~kY~~-~~~~ee~l~ 282 (906)
T PRK14720 239 WDEVIYILKKILEHDNKNNKAREELIRFYK--EKYKD-HSLLEDYLK 282 (906)
T ss_pred hhHHHHHHHHHHhcCCcchhhHHHHHHHHH--HHccC-cchHHHHHH
Confidence 888888888888888888888888888887 33333 444444444
|
|
| >cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain | Back alignment and domain information |
|---|
Probab=99.56 E-value=1e-14 Score=126.02 Aligned_cols=86 Identities=14% Similarity=0.159 Sum_probs=80.5
Q ss_pred CCCceEEEeecCCCccccccchHHHHHHhhCC--CcEEEEEecccCcchhhhCCccccceEEEEeCCeEEEEEcCC-CHH
Q 005108 627 LPGVSVVHFKSASNLHCKQISPYVETLCGRYP--SINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKEIVCP-SRD 703 (714)
Q Consensus 627 ~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~--~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~~~~g~-~~~ 703 (714)
...+++|+||++||++|+.+.|.++++..+++ ++.|++||++..+.++++++|+++||+++|++|+.+.++.|. +.+
T Consensus 23 ~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~l~~~~~V~~~Pt~~i~~~g~~~~~~~G~~~~~ 102 (111)
T cd02963 23 FKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERRLARKLGAHSVPAIVGIINGQVTFYHDSSFTKQ 102 (111)
T ss_pred CCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHHHHHHcCCccCCEEEEEECCEEEEEecCCCCHH
Confidence 46799999999999999999999999999985 588999999999999999999999999999999999999998 999
Q ss_pred HHHHHHhhh
Q 005108 704 MLEHSVRHY 712 (714)
Q Consensus 704 ~l~~~~~~~ 712 (714)
.|.++|+++
T Consensus 103 ~l~~~i~~~ 111 (111)
T cd02963 103 HVVDFVRKL 111 (111)
T ss_pred HHHHHHhcC
Confidence 999999864
|
DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network. |
| >cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain | Back alignment and domain information |
|---|
Probab=99.56 E-value=9.6e-15 Score=123.14 Aligned_cols=83 Identities=22% Similarity=0.362 Sum_probs=78.1
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhCCC-cEEEEEecccCcchhhhCCccccceEEEEeCCeEEEEEcCC-CHHHH
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRYPS-INFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKEIVCP-SRDML 705 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~-~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~~~~g~-~~~~l 705 (714)
.++++++||++||++|+.+.|.++++...+++ +.|+.||++...++++.|+|.++||+++|++|+.+.++.|. +.+.|
T Consensus 12 ~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l 91 (96)
T cd02956 12 QVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQPQIAQQFGVQALPTVYLFAAGQPVDGFQGAQPEEQL 91 (96)
T ss_pred CCeEEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCHHHHHHcCCCCCCEEEEEeCCEEeeeecCCCCHHHH
Confidence 56999999999999999999999999999865 88999999999999999999999999999999999999999 89999
Q ss_pred HHHHh
Q 005108 706 EHSVR 710 (714)
Q Consensus 706 ~~~~~ 710 (714)
+++|+
T Consensus 92 ~~~l~ 96 (96)
T cd02956 92 RQMLD 96 (96)
T ss_pred HHHhC
Confidence 98874
|
Its gene has been sequenced from several gammaproteobacteria and actinobacteria. |
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.7e-13 Score=133.44 Aligned_cols=181 Identities=20% Similarity=0.117 Sum_probs=152.4
Q ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHH--
Q 005108 237 ICGGDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNA---AFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWR-- 311 (714)
Q Consensus 237 ~~p~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-- 311 (714)
..+..+..++.+|..++..|++++|+..|++++..+|+++ .+++.+|.++..+|++++|+..|+++++.+|++..
T Consensus 28 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 107 (235)
T TIGR03302 28 VEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDAD 107 (235)
T ss_pred cccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchH
Confidence 4566889999999999999999999999999999999875 57899999999999999999999999999998765
Q ss_pred -HHHHHHHHHHHc--------CCHHHHHHHHHhhcCC-C-ChHHHHHHHHH--------HHHHHHhHHHHHcCCHHHHHH
Q 005108 312 -AHQRLGSLLVRL--------GQVENARRHLCLSGQQ-A-DPTEVHRLQVV--------EKHLSKCTDARKVGDWKSALR 372 (714)
Q Consensus 312 -a~~~la~~~~~~--------g~~~~A~~~~~~al~~-~-~~~~~~~l~~~--------~~~~~~a~~~~~~g~~~~Al~ 372 (714)
+++.+|.++... |++++|++.|++++.. + .......+..+ ...+..+..+...|++++|+.
T Consensus 108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~ 187 (235)
T TIGR03302 108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAIN 187 (235)
T ss_pred HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 799999999887 8899999999999872 2 22222111111 123467788999999999999
Q ss_pred HHHHHHHcCCCC--CHHHHHHHHHHHHHcCCHHHHHHHhhccccCCC
Q 005108 373 EGDAAIAAGADF--SPQLSMCRVEALLKLHQLEDAESSLSNIPKIEP 417 (714)
Q Consensus 373 ~~~~al~~~p~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 417 (714)
.|++++...|+. ....+..++.++..+|++++|..+++.+....|
T Consensus 188 ~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 188 RFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 999999998863 457788899999999999999999988776654
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK10996 thioredoxin 2; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.5e-14 Score=130.10 Aligned_cols=96 Identities=17% Similarity=0.285 Sum_probs=88.6
Q ss_pred hhhHHhhhccCCCceEEEeecCCCccccccchHHHHHHhhCC-CcEEEEEecccCcchhhhCCccccceEEEEeCCeEEE
Q 005108 617 SLEQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYP-SINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMK 695 (714)
Q Consensus 617 ~~e~~~~~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~-~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~ 695 (714)
+.+.|..++..+++++|+||++||++|+.+.|.+.++..++. ++.|++||+++.++++++|+|.++||+++|++|+++.
T Consensus 41 ~~~~~~~~i~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~V~~~Ptlii~~~G~~v~ 120 (139)
T PRK10996 41 TGETLDKLLQDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAERELSARFRIRSIPTIMIFKNGQVVD 120 (139)
T ss_pred CHHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCHHHHHhcCCCccCEEEEEECCEEEE
Confidence 456778888778899999999999999999999999998875 5999999999999999999999999999999999999
Q ss_pred EEcCC-CHHHHHHHHhhh
Q 005108 696 EIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 696 ~~~g~-~~~~l~~~~~~~ 712 (714)
++.|. +.++|+++|+++
T Consensus 121 ~~~G~~~~e~l~~~l~~~ 138 (139)
T PRK10996 121 MLNGAVPKAPFDSWLNEA 138 (139)
T ss_pred EEcCCCCHHHHHHHHHHh
Confidence 99999 999999999874
|
|
| >cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44 | Back alignment and domain information |
|---|
Probab=99.55 E-value=7.5e-15 Score=123.88 Aligned_cols=82 Identities=16% Similarity=0.182 Sum_probs=76.4
Q ss_pred CCCceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecc-cCcchhhhCCccccceEEEEeCCeEEEEEcCC-CHHH
Q 005108 627 LPGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDID-ESPGVAHAENVRIVPTFKIYKNGSRMKEIVCP-SRDM 704 (714)
Q Consensus 627 ~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d-~~~~l~~~~~v~~~Pt~~~~~~G~~~~~~~g~-~~~~ 704 (714)
.+++++|+||++||++|+.+.|.++++..+++++.|+.||.+ +.+.++++|+|.++||+++|++| .+.++.|. +.+.
T Consensus 17 ~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~~~~~~vd~~~~~~~l~~~~~V~~~PT~~lf~~g-~~~~~~G~~~~~~ 95 (100)
T cd02999 17 REDYTAVLFYASWCPFSASFRPHFNALSSMFPQIRHLAIEESSIKPSLLSRYGVVGFPTILLFNST-PRVRYNGTRTLDS 95 (100)
T ss_pred CCCEEEEEEECCCCHHHHhHhHHHHHHHHHhccCceEEEECCCCCHHHHHhcCCeecCEEEEEcCC-ceeEecCCCCHHH
Confidence 356899999999999999999999999999999999999999 78999999999999999999999 88899999 9999
Q ss_pred HHHHH
Q 005108 705 LEHSV 709 (714)
Q Consensus 705 l~~~~ 709 (714)
|.++|
T Consensus 96 l~~f~ 100 (100)
T cd02999 96 LAAFY 100 (100)
T ss_pred HHhhC
Confidence 88775
|
CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER. |
| >cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains | Back alignment and domain information |
|---|
Probab=99.55 E-value=9.7e-15 Score=124.30 Aligned_cols=91 Identities=19% Similarity=0.295 Sum_probs=82.8
Q ss_pred hhHHhhhccCCCceEEEeecCCCccccccchHHHHHHhhCCC-cEEEEEecccCcchhhhCCccccceEEEEeCCeEEEE
Q 005108 618 LEQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYPS-INFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKE 696 (714)
Q Consensus 618 ~e~~~~~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~-~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~~ 696 (714)
.+.|...+...++++|.||++||++|+.+.|.++++..++.+ +.|++||+++.+.++++|+|+++||+++|++|+.+.+
T Consensus 8 ~~~f~~~v~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~ 87 (101)
T cd03003 8 RGDFDAAVNSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRMLCRSQGVNSYPSLYVFPSGMNPEK 87 (101)
T ss_pred HhhHHHHhcCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccHHHHHHcCCCccCEEEEEcCCCCccc
Confidence 456777777778999999999999999999999999999975 8899999999999999999999999999999999999
Q ss_pred EcCC-CHHHHHHH
Q 005108 697 IVCP-SRDMLEHS 708 (714)
Q Consensus 697 ~~g~-~~~~l~~~ 708 (714)
+.|. +.+.|.++
T Consensus 88 ~~G~~~~~~l~~f 100 (101)
T cd03003 88 YYGDRSKESLVKF 100 (101)
T ss_pred CCCCCCHHHHHhh
Confidence 9998 88887764
|
This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.2e-13 Score=123.06 Aligned_cols=129 Identities=19% Similarity=0.272 Sum_probs=119.9
Q ss_pred HHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHH
Q 005108 455 TAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSV 534 (714)
Q Consensus 455 ~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 534 (714)
+.|++++..+|++......+ |..++..|++++|+..|++++..+|.++.++..+|.++..+|++++|+
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~------------a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~ 71 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYAL------------AYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAI 71 (135)
T ss_pred hhHHHHHcCChhhHHHHHHH------------HHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 46889999999998776655 999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 005108 535 EDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAESLFHAQVSL 595 (714)
Q Consensus 535 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~L~~~~~~l 595 (714)
.+|+++++.+|++...++.+|.+|...|++++|+..|+++++++|++.........+...+
T Consensus 72 ~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 132 (135)
T TIGR02552 72 DAYALAAALDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYSELKERAEAML 132 (135)
T ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998887777665544
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.4e-14 Score=120.99 Aligned_cols=92 Identities=26% Similarity=0.496 Sum_probs=82.8
Q ss_pred hHHhhhccCC--CceEEEeecCCCccccccchHHHHHHhh-CCCcEEEEEecccCcchhhhCCccccceEEEEeCCeEEE
Q 005108 619 EQFRAAVSLP--GVSVVHFKSASNLHCKQISPYVETLCGR-YPSINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMK 695 (714)
Q Consensus 619 e~~~~~i~~~--~~~vv~f~a~~c~~C~~~~p~l~~l~~~-~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~ 695 (714)
+++...+... ..+++.||++||++|+.+.|.++++..+ ++++.|+++|.++.++++..|+|.++||+++|++|+++.
T Consensus 3 ~~~~~~~~~~~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~ 82 (97)
T cd02984 3 EEFEELLKSDASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPEISEKFEITAVPTFVFFRNGTIVD 82 (97)
T ss_pred HHHHHHHhhCCCCEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCHHHHHhcCCccccEEEEEECCEEEE
Confidence 4555656554 7999999999999999999999999998 567999999999999999999999999999999999999
Q ss_pred EEcCCCHHHHHHHHh
Q 005108 696 EIVCPSRDMLEHSVR 710 (714)
Q Consensus 696 ~~~g~~~~~l~~~~~ 710 (714)
++.|.+.++|.+.|+
T Consensus 83 ~~~g~~~~~l~~~~~ 97 (97)
T cd02984 83 RVSGADPKELAKKVE 97 (97)
T ss_pred EEeCCCHHHHHHhhC
Confidence 999998888888763
|
PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. |
| >cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.1e-13 Score=130.48 Aligned_cols=101 Identities=22% Similarity=0.350 Sum_probs=83.8
Q ss_pred cceeeehhhhHHhhhccCC--CceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCcchhhhCCccccceEEE
Q 005108 610 GEVEEVSSLEQFRAAVSLP--GVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAHAENVRIVPTFKI 687 (714)
Q Consensus 610 ~~~~~i~~~e~~~~~i~~~--~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~ 687 (714)
|.+..++..+.+..+.... ..+||+||++||++|+.+.|.|++|+.+|+.+.|++||++.. +..|+|..+|||++
T Consensus 82 G~v~eis~~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~~vkFvkI~ad~~---~~~~~i~~lPTlli 158 (192)
T cd02988 82 GEVYEISKPDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKFPDTKFVKIISTQC---IPNYPDKNLPTILV 158 (192)
T ss_pred CeEEEeCHHHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHCCCCEEEEEEhHHh---HhhCCCCCCCEEEE
Confidence 4666676644444444333 479999999999999999999999999999999999999864 67899999999999
Q ss_pred EeCCeEEEEEcCC--------CHHHHHHHHhhhc
Q 005108 688 YKNGSRMKEIVCP--------SRDMLEHSVRHYS 713 (714)
Q Consensus 688 ~~~G~~~~~~~g~--------~~~~l~~~~~~~~ 713 (714)
|+||+.+.+++|+ +.+.|+..|.+++
T Consensus 159 yk~G~~v~~ivG~~~~gg~~~~~~~lE~~L~~~g 192 (192)
T cd02988 159 YRNGDIVKQFIGLLEFGGMNTTMEDLEWLLVQVG 192 (192)
T ss_pred EECCEEEEEEeCchhhCCCCCCHHHHHHHHHhcC
Confidence 9999999999885 5678888777653
|
It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain. |
| >PRK09381 trxA thioredoxin; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=5.8e-14 Score=121.40 Aligned_cols=99 Identities=24% Similarity=0.446 Sum_probs=87.0
Q ss_pred eeehhhhHHhh-hccCCCceEEEeecCCCccccccchHHHHHHhhCCC-cEEEEEecccCcchhhhCCccccceEEEEeC
Q 005108 613 EEVSSLEQFRA-AVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYPS-INFLKVDIDESPGVAHAENVRIVPTFKIYKN 690 (714)
Q Consensus 613 ~~i~~~e~~~~-~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~-~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~ 690 (714)
..+.. +.|.. ++...++++++||++||++|+.+.|.++++..++++ +.|+.+|++..+.+++.|+|+.+||+++|++
T Consensus 6 ~~~~~-~~~~~~v~~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~ 84 (109)
T PRK09381 6 IHLTD-DSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKN 84 (109)
T ss_pred eeeCh-hhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChhHHHhCCCCcCCEEEEEeC
Confidence 34433 34554 455577999999999999999999999999999964 8899999999999999999999999999999
Q ss_pred CeEEEEEcCC-CHHHHHHHHhhh
Q 005108 691 GSRMKEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 691 G~~~~~~~g~-~~~~l~~~~~~~ 712 (714)
|+.+.++.|. +.+.|+.+|+.+
T Consensus 85 G~~~~~~~G~~~~~~l~~~i~~~ 107 (109)
T PRK09381 85 GEVAATKVGALSKGQLKEFLDAN 107 (109)
T ss_pred CeEEEEecCCCCHHHHHHHHHHh
Confidence 9999999999 999999999875
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.2e-11 Score=131.76 Aligned_cols=278 Identities=13% Similarity=-0.038 Sum_probs=194.1
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH----HHHHHHHHHHHhcCCCcHHHHHH
Q 005108 240 GDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRI----GEAVKECEEAVRLDPNYWRAHQR 315 (714)
Q Consensus 240 ~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~----~~A~~~~~~al~~~p~~~~a~~~ 315 (714)
+..+..+..+..++..|++++|+..++++++.+|++..++.. +..+..+|++ ..+.+.+......+|....++..
T Consensus 41 ~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 119 (355)
T cd05804 41 TERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGM 119 (355)
T ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHH
Confidence 456778889999999999999999999999999999887775 5555555544 44444444433567777888889
Q ss_pred HHHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCC---HHHHHHH
Q 005108 316 LGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFS---PQLSMCR 392 (714)
Q Consensus 316 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~---~~~~~~l 392 (714)
+|.++..+|++++|+..+++++...+.. ...+..++.++...|++++|+..+++++...|... ...+..+
T Consensus 120 ~a~~~~~~G~~~~A~~~~~~al~~~p~~-------~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~l 192 (355)
T cd05804 120 LAFGLEEAGQYDRAEEAARRALELNPDD-------AWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHL 192 (355)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCC-------cHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHH
Confidence 9999999999999999999998833322 23456677889999999999999999999876422 2345569
Q ss_pred HHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHH---HHHHhccCCCCHH
Q 005108 393 VEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTA---AEKAGQIDPRNVE 469 (714)
Q Consensus 393 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~---~~~al~~~p~~~~ 469 (714)
+.++...|++++|+..|++++...+.... .........+...+...|..+.+... ........+....
T Consensus 193 a~~~~~~G~~~~A~~~~~~~~~~~~~~~~---------~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~ 263 (355)
T cd05804 193 ALFYLERGDYEAALAIYDTHIAPSAESDP---------ALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGL 263 (355)
T ss_pred HHHHHHCCCHHHHHHHHHHHhccccCCCh---------HHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccc
Confidence 99999999999999999999776663210 00000010222233333432222222 1111111122111
Q ss_pred HHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCC---------CHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 005108 470 VAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPS---------NSVLYCNRAACWFKLGQWERSVEDSNQA 540 (714)
Q Consensus 470 ~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~---------~~~~~~~la~~~~~~g~~~~A~~~~~~a 540 (714)
....+ ..+.++...|+.++|...++.+...... ...+....+.++...|++++|++.+..+
T Consensus 264 ~~~~~----------~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~a 333 (355)
T cd05804 264 AFNDL----------HAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPV 333 (355)
T ss_pred hHHHH----------HHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 11111 3488889999999999999877653322 3566778899999999999999999999
Q ss_pred HHhC
Q 005108 541 LLIQ 544 (714)
Q Consensus 541 l~~~ 544 (714)
+.+-
T Consensus 334 l~~a 337 (355)
T cd05804 334 RDDL 337 (355)
T ss_pred HHHH
Confidence 8753
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.51 E-value=5.4e-13 Score=134.98 Aligned_cols=264 Identities=17% Similarity=0.155 Sum_probs=181.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHH
Q 005108 250 NELYRKGCFGEALSMYDKAISLAPR-NAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVRLGQVEN 328 (714)
Q Consensus 250 ~~~~~~g~~~~Al~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~ 328 (714)
+.+|-.|+|..++..++ ....++. .......+.++++.+|+++..+...... .+....+...++..+....+.+.
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~~---~~~~l~av~~la~y~~~~~~~e~ 84 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKKS---SSPELQAVRLLAEYLSSPSDKES 84 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-TT---SSCCCHHHHHHHHHHCTSTTHHC
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhccC---CChhHHHHHHHHHHHhCccchHH
Confidence 45667788888887776 2222322 3456677788888888887766554331 22234455555555444344445
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 005108 329 ARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESS 408 (714)
Q Consensus 329 A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~ 408 (714)
++..++..+.... ....+.+....|.++...|++++|++.
T Consensus 85 ~l~~l~~~~~~~~----------------------------------------~~~~~~~~~~~A~i~~~~~~~~~AL~~ 124 (290)
T PF04733_consen 85 ALEELKELLADQA----------------------------------------GESNEIVQLLAATILFHEGDYEEALKL 124 (290)
T ss_dssp HHHHHHHCCCTS-------------------------------------------CHHHHHHHHHHHHCCCCHHHHHHCC
T ss_pred HHHHHHHHHHhcc----------------------------------------ccccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 5444443332111 111223344467888888999999988
Q ss_pred hhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHh
Q 005108 409 LSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGN 488 (714)
Q Consensus 409 ~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~ 488 (714)
+.+. .+ ........++++.+++++.|.+.++.+.+.+.+..-..... ++
T Consensus 125 l~~~-----~~--------------lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~------------aw 173 (290)
T PF04733_consen 125 LHKG-----GS--------------LELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAE------------AW 173 (290)
T ss_dssp CTTT-----TC--------------HHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHH------------HH
T ss_pred HHcc-----Cc--------------ccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHH------------HH
Confidence 8764 33 45666778899999999999999999988877654333222 44
Q ss_pred HHhhCc--CHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccH-H
Q 005108 489 DLFKSE--RFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKW-A 565 (714)
Q Consensus 489 ~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~-~ 565 (714)
+.+..| ++++|...|++..+..+.++.+++.++.|++.+|+|++|.+.++++++.+|++++++.+++.+...+|+. +
T Consensus 174 v~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~ 253 (290)
T PF04733_consen 174 VNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTE 253 (290)
T ss_dssp HHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCH
T ss_pred HHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChh
Confidence 444444 6999999999998888889999999999999999999999999999999999999999999999999998 6
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHH
Q 005108 566 DAVRDFEVLRRELPDDNEIAESL 588 (714)
Q Consensus 566 eA~~~~~~al~~~p~~~~~~~~L 588 (714)
.+.+++.++...+|+++-+...-
T Consensus 254 ~~~~~l~qL~~~~p~h~~~~~~~ 276 (290)
T PF04733_consen 254 AAERYLSQLKQSNPNHPLVKDLA 276 (290)
T ss_dssp HHHHHHHHCHHHTTTSHHHHHHH
T ss_pred HHHHHHHHHHHhCCCChHHHHHH
Confidence 67789999999999988766543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.8e-12 Score=143.86 Aligned_cols=137 Identities=13% Similarity=0.043 Sum_probs=126.7
Q ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCC
Q 005108 434 AYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSN 513 (714)
Q Consensus 434 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~ 513 (714)
..+++.+|.+....|++++|..+++.++++.|++..++..+ +.++.+.+++++|+..+++++..+|++
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~------------a~~L~~~~~~eeA~~~~~~~l~~~p~~ 153 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILM------------LRGVKRQQGIEAGRAEIELYFSGGSSS 153 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHH------------HHHHHHhccHHHHHHHHHHHhhcCCCC
Confidence 77899999999999999999999999999999999998876 889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCH
Q 005108 514 SVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDN 582 (714)
Q Consensus 514 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~ 582 (714)
+..++.+|.++.++|++++|++.|++++..+|++..++..+|.++..+|+.++|...|+++++....-.
T Consensus 154 ~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~ 222 (694)
T PRK15179 154 AREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGA 222 (694)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcch
Confidence 999999999999999999999999999999999999999999999999999999999999998765443
|
|
| >PTZ00062 glutaredoxin; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=6.6e-14 Score=132.08 Aligned_cols=89 Identities=18% Similarity=0.285 Sum_probs=81.2
Q ss_pred hhhHHhhhccCC-CceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCcchhhhCCccccceEEEEeCCeEEE
Q 005108 617 SLEQFRAAVSLP-GVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMK 695 (714)
Q Consensus 617 ~~e~~~~~i~~~-~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~ 695 (714)
+.+++...+..+ +.++++||++||++|+.+.|.+.+|.++||++.|+.||.| |+|.++|||++|++|+.++
T Consensus 5 ~~ee~~~~i~~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~~~F~~V~~d--------~~V~~vPtfv~~~~g~~i~ 76 (204)
T PTZ00062 5 KKEEKDKLIESNTGKLVLYVKSSKEPEYEQLMDVCNALVEDFPSLEFYVVNLA--------DANNEYGVFEFYQNSQLIN 76 (204)
T ss_pred CHHHHHHHHhcCCCcEEEEEeCCCCcchHHHHHHHHHHHHHCCCcEEEEEccc--------cCcccceEEEEEECCEEEe
Confidence 446677766654 8899999999999999999999999999999999999988 8999999999999999999
Q ss_pred EEcCCCHHHHHHHHhhhc
Q 005108 696 EIVCPSRDMLEHSVRHYS 713 (714)
Q Consensus 696 ~~~g~~~~~l~~~~~~~~ 713 (714)
|+.|.+..+|...|+++.
T Consensus 77 r~~G~~~~~~~~~~~~~~ 94 (204)
T PTZ00062 77 SLEGCNTSTLVSFIRGWA 94 (204)
T ss_pred eeeCCCHHHHHHHHHHHc
Confidence 999999999999998764
|
|
| >cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains | Back alignment and domain information |
|---|
Probab=99.50 E-value=4.8e-14 Score=120.78 Aligned_cols=92 Identities=17% Similarity=0.239 Sum_probs=81.2
Q ss_pred hhHHhhhc-cCCCceEEEeecCCCccccccchHHHHHHhhCCC-cEEEEEecccCcchhhhCCccccceEEEEeCC-eEE
Q 005108 618 LEQFRAAV-SLPGVSVVHFKSASNLHCKQISPYVETLCGRYPS-INFLKVDIDESPGVAHAENVRIVPTFKIYKNG-SRM 694 (714)
Q Consensus 618 ~e~~~~~i-~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~-~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G-~~~ 694 (714)
.+.|...+ ...++++|+||++||++|+.+.|.++++..++.+ +.|++||+++.+++++.|+|+++||+++|++| +.+
T Consensus 8 ~~~f~~~i~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~ 87 (104)
T cd03004 8 PEDFPELVLNRKEPWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKYESLCQQANIRAYPTIRLYPGNASKY 87 (104)
T ss_pred HHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCchHHHHHHcCCCcccEEEEEcCCCCCc
Confidence 34666654 4456899999999999999999999999999854 89999999999999999999999999999988 999
Q ss_pred EEEcCC-C-HHHHHHHH
Q 005108 695 KEIVCP-S-RDMLEHSV 709 (714)
Q Consensus 695 ~~~~g~-~-~~~l~~~~ 709 (714)
.++.|. + .+.|..+|
T Consensus 88 ~~~~G~~~~~~~l~~~i 104 (104)
T cd03004 88 HSYNGWHRDADSILEFI 104 (104)
T ss_pred eEccCCCCCHHHHHhhC
Confidence 999998 7 88888764
|
This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus. |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.50 E-value=7.2e-12 Score=117.35 Aligned_cols=185 Identities=17% Similarity=0.077 Sum_probs=162.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCC
Q 005108 386 PQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDP 465 (714)
Q Consensus 386 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 465 (714)
..++-....+.+..|+.+.|..+++++....|.+ ..+....|..+...|++++|+++|+..++-+|
T Consensus 52 w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S--------------~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddp 117 (289)
T KOG3060|consen 52 WTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGS--------------KRVGKLKAMLLEATGNYKEAIEYYESLLEDDP 117 (289)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCC--------------hhHHHHHHHHHHHhhchhhHHHHHHHHhccCc
Confidence 4455567888899999999999999999888988 66777889999999999999999999999999
Q ss_pred CCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Q 005108 466 RNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQP 545 (714)
Q Consensus 466 ~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 545 (714)
.+...+..- -.+...+|+--+||+.+.+.++..+.|.++|..++.+|...|+|++|.-+|++++-++|
T Consensus 118 t~~v~~KRK------------lAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P 185 (289)
T KOG3060|consen 118 TDTVIRKRK------------LAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQP 185 (289)
T ss_pred chhHHHHHH------------HHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCC
Confidence 998776532 45567788888999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Q 005108 546 NYTKALLRRAASNSKLE---KWADAVRDFEVLRRELPDDNEIAESLFHAQVSLK 596 (714)
Q Consensus 546 ~~~~~~~~la~~~~~~g---~~~eA~~~~~~al~~~p~~~~~~~~L~~~~~~l~ 596 (714)
.++..+.++|.+++-+| +++-|.++|.++++++|.+...+..+..+-..+-
T Consensus 186 ~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~~la 239 (289)
T KOG3060|consen 186 FNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLCGSALA 239 (289)
T ss_pred CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHHHH
Confidence 99999999999998776 6788999999999999977777666665555544
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.4e-11 Score=144.60 Aligned_cols=325 Identities=14% Similarity=0.038 Sum_probs=236.9
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc--
Q 005108 241 DAEELKRMGNELYRKGCFGEALSMYDKAISLAPR---------NAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNY-- 309 (714)
Q Consensus 241 ~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-- 309 (714)
++......+..++..|++++|...+.++....+. ...+...++.++...|++++|...++++++..+..
T Consensus 408 ~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~ 487 (903)
T PRK04841 408 NPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWY 487 (903)
T ss_pred CcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccH
Confidence 3445567788888999999999999998765321 13455567888999999999999999999854432
Q ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCC---
Q 005108 310 ---WRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGAD--- 383 (714)
Q Consensus 310 ---~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~--- 383 (714)
..++..+|.++...|++++|...+++++....... ...........++.++...|++++|...+++++.....
T Consensus 488 ~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g-~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~ 566 (903)
T PRK04841 488 YSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHD-VYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHL 566 (903)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhc-chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcc
Confidence 24567889999999999999999999875211110 01112334567788899999999999999998876221
Q ss_pred --C--CHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHH
Q 005108 384 --F--SPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEK 459 (714)
Q Consensus 384 --~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 459 (714)
. ....+..++.++...|++++|...+.+++........ ......+..++.++...|++++|...+++
T Consensus 567 ~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~---------~~~~~~~~~la~~~~~~G~~~~A~~~l~~ 637 (903)
T PRK04841 567 EQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQP---------QQQLQCLAMLAKISLARGDLDNARRYLNR 637 (903)
T ss_pred ccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCc---------hHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 1 1233456788999999999999999999876443210 01245667789999999999999999999
Q ss_pred HhccCCCCH---HHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCH----HHHHHHHHHHHHhCCHHH
Q 005108 460 AGQIDPRNV---EVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNS----VLYCNRAACWFKLGQWER 532 (714)
Q Consensus 460 al~~~p~~~---~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~ 532 (714)
+..+..... ....... ......+...|+.++|..++.......+... ..+..++.++...|++++
T Consensus 638 a~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~ 709 (903)
T PRK04841 638 LENLLGNGRYHSDWIANAD--------KVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDE 709 (903)
T ss_pred HHHHHhcccccHhHhhHHH--------HHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHH
Confidence 976533221 1111000 0113445568999999999887665432222 225678999999999999
Q ss_pred HHHHHHHHHHhC------CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHH
Q 005108 533 SVEDSNQALLIQ------PNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNE 583 (714)
Q Consensus 533 A~~~~~~al~~~------p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~ 583 (714)
|+..+++++... .....++..+|.++...|+.++|...+.+++++......
T Consensus 710 A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~g~ 766 (903)
T PRK04841 710 AEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANRTGF 766 (903)
T ss_pred HHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCccch
Confidence 999999998852 223467889999999999999999999999998865543
|
|
| >cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus | Back alignment and domain information |
|---|
Probab=99.50 E-value=5.9e-14 Score=126.52 Aligned_cols=93 Identities=18% Similarity=0.320 Sum_probs=82.2
Q ss_pred HHhhhccCCCceEEEeecCCCccccccchHHHHHHhhCCC-cEEEEEecccC--cchhhhCCccccceEEEE-eCCeEEE
Q 005108 620 QFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYPS-INFLKVDIDES--PGVAHAENVRIVPTFKIY-KNGSRMK 695 (714)
Q Consensus 620 ~~~~~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~-~~~~~vd~d~~--~~l~~~~~v~~~Pt~~~~-~~G~~~~ 695 (714)
++..++...++++|+||++||++|+.+.|.+.++..++.+ +.|+.||++.. ..++..|+|.++||++|| ++|+++.
T Consensus 12 ~~~~a~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~~G~~v~ 91 (142)
T cd02950 12 PPEVALSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDREGNEEG 91 (142)
T ss_pred CHHHHHhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECCCCCEEE
Confidence 4555666778999999999999999999999999999864 78999988864 478999999999999999 6999999
Q ss_pred EEcCC-CHHHHHHHHhhh
Q 005108 696 EIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 696 ~~~g~-~~~~l~~~~~~~ 712 (714)
++.|. +.++|+..|+++
T Consensus 92 ~~~G~~~~~~l~~~l~~l 109 (142)
T cd02950 92 QSIGLQPKQVLAQNLDAL 109 (142)
T ss_pred EEeCCCCHHHHHHHHHHH
Confidence 99999 889999998875
|
It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport. |
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.4e-12 Score=123.34 Aligned_cols=153 Identities=13% Similarity=0.136 Sum_probs=130.7
Q ss_pred hHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHH
Q 005108 358 CTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTF 437 (714)
Q Consensus 358 a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~ 437 (714)
...|...|+++......++... |. .-+...++.++++..++++++.+|++ ...|
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~--~~----------~~~~~~~~~~~~i~~l~~~L~~~P~~--------------~~~w 76 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD--PL----------HQFASQQTPEAQLQALQDKIRANPQN--------------SEQW 76 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC--cc----------ccccCchhHHHHHHHHHHHHHHCCCC--------------HHHH
Confidence 3457888998886555432211 11 01223677899999999999999999 8899
Q ss_pred HHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHH-hhCcC--HHHHHHHHHHhhccCCCCH
Q 005108 438 FVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDL-FKSER--FTEACQAYGEGLRFDPSNS 514 (714)
Q Consensus 438 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~-~~~g~--~~~A~~~~~~al~~~p~~~ 514 (714)
..+|.+|...|++++|+..|+++++++|++..++..+ |.++ ...|+ +++|++.++++++.+|++.
T Consensus 77 ~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~l------------A~aL~~~~g~~~~~~A~~~l~~al~~dP~~~ 144 (198)
T PRK10370 77 ALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAAL------------ATVLYYQAGQHMTPQTREMIDKALALDANEV 144 (198)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH------------HHHHHHhcCCCCcHHHHHHHHHHHHhCCCCh
Confidence 9999999999999999999999999999999999877 8864 67777 5999999999999999999
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH
Q 005108 515 VLYCNRAACWFKLGQWERSVEDSNQALLIQPNYT 548 (714)
Q Consensus 515 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 548 (714)
.+++++|.++.+.|++++|+.+|++++++.|.+.
T Consensus 145 ~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~ 178 (198)
T PRK10370 145 TALMLLASDAFMQADYAQAIELWQKVLDLNSPRV 178 (198)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 9999999999999999999999999999988765
|
|
| >cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library | Back alignment and domain information |
|---|
Probab=99.49 E-value=9.3e-14 Score=125.21 Aligned_cols=82 Identities=21% Similarity=0.352 Sum_probs=73.8
Q ss_pred hhHHhhhccC--CCceEEEeecCCCccccccchHHHHHHhhCC--CcEEEEEecccCcchhhhCCccc------cceEEE
Q 005108 618 LEQFRAAVSL--PGVSVVHFKSASNLHCKQISPYVETLCGRYP--SINFLKVDIDESPGVAHAENVRI------VPTFKI 687 (714)
Q Consensus 618 ~e~~~~~i~~--~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~--~~~~~~vd~d~~~~l~~~~~v~~------~Pt~~~ 687 (714)
.++|.+.+.. ..+++|+||++||++|+.+.|.++++..++. ++.|++||+++.++++++|+|.. +||+++
T Consensus 35 ~~~f~~~l~~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~la~~~~V~~~~~v~~~PT~il 114 (152)
T cd02962 35 PKTLEEELERDKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPNVAEKFRVSTSPLSKQLPTIIL 114 (152)
T ss_pred HHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHHHHHHcCceecCCcCCCCEEEE
Confidence 3567776632 4589999999999999999999999999885 49999999999999999999988 999999
Q ss_pred EeCCeEEEEEcC
Q 005108 688 YKNGSRMKEIVC 699 (714)
Q Consensus 688 ~~~G~~~~~~~g 699 (714)
|++|+++.++.|
T Consensus 115 f~~Gk~v~r~~G 126 (152)
T cd02962 115 FQGGKEVARRPY 126 (152)
T ss_pred EECCEEEEEEec
Confidence 999999999997
|
It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail. |
| >cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding | Back alignment and domain information |
|---|
Probab=99.49 E-value=1e-13 Score=119.76 Aligned_cols=92 Identities=17% Similarity=0.144 Sum_probs=81.0
Q ss_pred HhhhccCCCceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCcchhhhCCccccceEEEEeCCeEEE--EEc
Q 005108 621 FRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMK--EIV 698 (714)
Q Consensus 621 ~~~~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~--~~~ 698 (714)
+.+.+..+..+++.||++||++|+.+.|.++++..+++.+.|.++|+++.++++.+|+|+++||+++|++|.... ++.
T Consensus 15 ~~~~l~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d~~~~l~~~~~v~~vPt~~i~~~g~~~~~~~~~ 94 (113)
T cd02975 15 FFKEMKNPVDLVVFSSKEGCQYCEVTKQLLEELSELSDKLKLEIYDFDEDKEKAEKYGVERVPTTIFLQDGGKDGGIRYY 94 (113)
T ss_pred HHHHhCCCeEEEEEeCCCCCCChHHHHHHHHHHHHhcCceEEEEEeCCcCHHHHHHcCCCcCCEEEEEeCCeecceEEEE
Confidence 445555666788999999999999999999999998877999999999999999999999999999999987665 778
Q ss_pred CC-CHHHHHHHHhhh
Q 005108 699 CP-SRDMLEHSVRHY 712 (714)
Q Consensus 699 g~-~~~~l~~~~~~~ 712 (714)
|. +.+++.++|+.+
T Consensus 95 G~~~~~el~~~i~~i 109 (113)
T cd02975 95 GLPAGYEFASLIEDI 109 (113)
T ss_pred ecCchHHHHHHHHHH
Confidence 88 888999998764
|
PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions. |
| >cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention | Back alignment and domain information |
|---|
Probab=99.47 E-value=9.8e-14 Score=119.65 Aligned_cols=92 Identities=21% Similarity=0.313 Sum_probs=80.5
Q ss_pred hhHHhhhccCCCceEEEeecCCCccccccchHHHHHHhhC----C---CcEEEEEecccCcchhhhCCccccceEEEEeC
Q 005108 618 LEQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRY----P---SINFLKVDIDESPGVAHAENVRIVPTFKIYKN 690 (714)
Q Consensus 618 ~e~~~~~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~----~---~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~ 690 (714)
.+.|...+...+.++|.||++||++|+.+.|.++++...+ + .+.|++||+++..+++++|+|+++||+++|++
T Consensus 8 ~~~f~~~i~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Ptl~~~~~ 87 (108)
T cd02996 8 SGNIDDILQSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRINKYPTLKLFRN 87 (108)
T ss_pred HhhHHHHHhcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCCCcCCEEEEEeC
Confidence 4677777777788999999999999999999999988764 2 37899999999999999999999999999999
Q ss_pred CeE-EEEEcCC-CHHHHHHHH
Q 005108 691 GSR-MKEIVCP-SRDMLEHSV 709 (714)
Q Consensus 691 G~~-~~~~~g~-~~~~l~~~~ 709 (714)
|++ ..++.|. +.+.|.++|
T Consensus 88 g~~~~~~~~g~~~~~~l~~fi 108 (108)
T cd02996 88 GMMMKREYRGQRSVEALAEFV 108 (108)
T ss_pred CcCcceecCCCCCHHHHHhhC
Confidence 995 4677788 888888765
|
It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. |
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=5.3e-12 Score=142.26 Aligned_cols=243 Identities=8% Similarity=-0.025 Sum_probs=187.7
Q ss_pred hhhhhcCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Q 005108 230 VNRNRGGICGGDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNY 309 (714)
Q Consensus 230 ~~~~~~~~~p~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 309 (714)
.+.......|.+..++..++..+...+++++|++.++.+++.+|+...+|+.+|.++.+.+++.+|.-. .++...+.+
T Consensus 19 ~r~~~~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~ 96 (906)
T PRK14720 19 TRADANNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQN 96 (906)
T ss_pred hhcccccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccc
Confidence 334445578899999999999999999999999999999999999999999999999999998887766 666554443
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 005108 310 WRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLS 389 (714)
Q Consensus 310 ~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~ 389 (714)
... ...-..+..++++-. .-.+++.+|.+|.++|++++|...|+++++.+|+ ++.+.
T Consensus 97 ~~~-~~ve~~~~~i~~~~~---------------------~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aL 153 (906)
T PRK14720 97 LKW-AIVEHICDKILLYGE---------------------NKLALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIV 153 (906)
T ss_pred cch-hHHHHHHHHHHhhhh---------------------hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHH
Confidence 211 111111111111111 1125677888899999999999999999999987 56777
Q ss_pred HHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHH
Q 005108 390 MCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVE 469 (714)
Q Consensus 390 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 469 (714)
.++|..|... ++++|++++.+++.. +...++|.++.+++.+.+..+|++.+
T Consensus 154 Nn~AY~~ae~-dL~KA~~m~~KAV~~----------------------------~i~~kq~~~~~e~W~k~~~~~~~d~d 204 (906)
T PRK14720 154 KKLATSYEEE-DKEKAITYLKKAIYR----------------------------FIKKKQYVGIEEIWSKLVHYNSDDFD 204 (906)
T ss_pred HHHHHHHHHh-hHHHHHHHHHHHHHH----------------------------HHhhhcchHHHHHHHHHHhcCcccch
Confidence 7899999999 999999999888642 45567899999999999999999888
Q ss_pred HHHHHHhH--------HHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHH
Q 005108 470 VAVLLNNV--------KLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFK 526 (714)
Q Consensus 470 ~~~~l~~l--------~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 526 (714)
.+..+.+. +.+..+..+-..|...++|++++.+++.+|+++|.|..+...++.||..
T Consensus 205 ~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~~ 269 (906)
T PRK14720 205 FFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYKE 269 (906)
T ss_pred HHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHHH
Confidence 75544321 1122233444778889999999999999999999999999999999974
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.46 E-value=7.2e-12 Score=122.07 Aligned_cols=320 Identities=12% Similarity=-0.001 Sum_probs=198.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--------------cCC-
Q 005108 243 EELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVR--------------LDP- 307 (714)
Q Consensus 243 ~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--------------~~p- 307 (714)
..-.-+|.+++..|+|++|+..|+-+...+.-+.+.+.++|.|++-+|.|.+|.....++-+ ++.
T Consensus 58 ~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndE 137 (557)
T KOG3785|consen 58 SLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDE 137 (557)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcH
Confidence 33455899999999999999999999988777899999999999999999999887766522 211
Q ss_pred -----------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHH
Q 005108 308 -----------NYWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDA 376 (714)
Q Consensus 308 -----------~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~ 376 (714)
+..+-...||.+++..-.|++|++.|.+.+..... .+......+.+|.++..++-+.+.++-
T Consensus 138 k~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~e-------y~alNVy~ALCyyKlDYydvsqevl~v 210 (557)
T KOG3785|consen 138 KRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPE-------YIALNVYMALCYYKLDYYDVSQEVLKV 210 (557)
T ss_pred HHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChh-------hhhhHHHHHHHHHhcchhhhHHHHHHH
Confidence 11334566788888888999999999998752211 112233455667777777777777777
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHc--CC----------------HHHHHHHhhccccCCCCCCCch--hhhhhhhhhhHHH
Q 005108 377 AIAAGADFSPQLSMCRVEALLKL--HQ----------------LEDAESSLSNIPKIEPSTVSSS--QTRFFGMLSEAYT 436 (714)
Q Consensus 377 al~~~p~~~~~~~~~la~~~~~~--g~----------------~~~A~~~~~~al~~~p~~~~~~--~~~~~~~~~~~~~ 436 (714)
-+...|+..... ..++..++++ |+ |+.+...++.-+-...+..... ...+.+.+ +.+
T Consensus 211 YL~q~pdStiA~-NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~I--PEA 287 (557)
T KOG3785|consen 211 YLRQFPDSTIAK-NLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHI--PEA 287 (557)
T ss_pred HHHhCCCcHHHH-HHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhC--hHh
Confidence 777766643222 2222222221 11 1122222211111111100000 01112222 223
Q ss_pred HHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHH-----------hHHHHHH-----------------HHHHHh
Q 005108 437 FFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLN-----------NVKLVAR-----------------ARARGN 488 (714)
Q Consensus 437 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~-----------~l~~~~~-----------------~~~~g~ 488 (714)
..++...|..+++.++|+.+.+..--..|......-... .++.++. -...+.
T Consensus 288 RlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs 367 (557)
T KOG3785|consen 288 RLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMAS 367 (557)
T ss_pred hhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHH
Confidence 445555566666666666655554443333321111000 0111111 123467
Q ss_pred HHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHH
Q 005108 489 DLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQ-PNYTKALLRRAASNSKLEKWADA 567 (714)
Q Consensus 489 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~eA 567 (714)
+++-..+|++-+.+++..-...-++....+++|.++...|+|.+|.+.|-+.-..+ .+.......||.||...++.+-|
T Consensus 368 ~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lA 447 (557)
T KOG3785|consen 368 YFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLA 447 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHH
Confidence 77778889998888887777777788888999999999999999999887765433 23344556789999999999988
Q ss_pred HHHHH
Q 005108 568 VRDFE 572 (714)
Q Consensus 568 ~~~~~ 572 (714)
.+.|-
T Consensus 448 W~~~l 452 (557)
T KOG3785|consen 448 WDMML 452 (557)
T ss_pred HHHHH
Confidence 87664
|
|
| >cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains | Back alignment and domain information |
|---|
Probab=99.46 E-value=2e-13 Score=115.06 Aligned_cols=85 Identities=20% Similarity=0.407 Sum_probs=79.0
Q ss_pred cCCCceEEEeecCCCccccccchHHHHHHhhCC-CcEEEEEecccCcchhhhCCccccceEEEEeCCeEEEEEcCC-CHH
Q 005108 626 SLPGVSVVHFKSASNLHCKQISPYVETLCGRYP-SINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKEIVCP-SRD 703 (714)
Q Consensus 626 ~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~-~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~~~~g~-~~~ 703 (714)
..++++++.||++||+.|+.+.|.++++..++. ++.++++|+++.++++..++|.++|++++|++|+.+.++.|. +.+
T Consensus 11 ~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~l~~~~~v~~vPt~~i~~~g~~v~~~~g~~~~~ 90 (97)
T cd02949 11 ESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQEIAEAAGIMGTPTVQFFKDKELVKEISGVKMKS 90 (97)
T ss_pred hCCCeEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHHHHHCCCeeccEEEEEECCeEEEEEeCCccHH
Confidence 456789999999999999999999999998886 489999999999999999999999999999999999999999 899
Q ss_pred HHHHHHh
Q 005108 704 MLEHSVR 710 (714)
Q Consensus 704 ~l~~~~~ 710 (714)
+|.++|+
T Consensus 91 ~~~~~l~ 97 (97)
T cd02949 91 EYREFIE 97 (97)
T ss_pred HHHHhhC
Confidence 9988874
|
The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress. |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.46 E-value=7.1e-13 Score=127.81 Aligned_cols=98 Identities=41% Similarity=0.591 Sum_probs=95.9
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 005108 241 DAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLL 320 (714)
Q Consensus 241 ~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 320 (714)
.++.+...|+.+++.++|++|+..|.+||+++|.|+.+|.++|.+|.++|+|+.|++.++.++.+||.+..+|.+||.+|
T Consensus 80 ~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~ 159 (304)
T KOG0553|consen 80 LAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAY 159 (304)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHhhcC
Q 005108 321 VRLGQVENARRHLCLSGQ 338 (714)
Q Consensus 321 ~~~g~~~~A~~~~~~al~ 338 (714)
+.+|++++|++.|+++++
T Consensus 160 ~~~gk~~~A~~aykKaLe 177 (304)
T KOG0553|consen 160 LALGKYEEAIEAYKKALE 177 (304)
T ss_pred HccCcHHHHHHHHHhhhc
Confidence 999999999999999997
|
|
| >cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX | Back alignment and domain information |
|---|
Probab=99.46 E-value=2e-13 Score=116.17 Aligned_cols=91 Identities=22% Similarity=0.343 Sum_probs=79.7
Q ss_pred hhHHhhhccCCCceEEEeecCCCccccccchHHHHHHhhCC--CcEEEEEecccCcchhhhCCccccceEEEEeCCeEEE
Q 005108 618 LEQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYP--SINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMK 695 (714)
Q Consensus 618 ~e~~~~~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~--~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~ 695 (714)
.+.|+.++. +.++|.||++||++|+.+.|.++++...+. ++.|..||+++.+.+++.|+|.++||+++|++|+ +.
T Consensus 8 ~~~f~~~~~--~~~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~-~~ 84 (101)
T cd02994 8 DSNWTLVLE--GEWMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPGLSGRFFVTALPTIYHAKDGV-FR 84 (101)
T ss_pred hhhHHHHhC--CCEEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHhHHHHcCCcccCEEEEeCCCC-EE
Confidence 456777664 347899999999999999999999998764 5889999999999999999999999999999998 47
Q ss_pred EEcCC-CHHHHHHHHhh
Q 005108 696 EIVCP-SRDMLEHSVRH 711 (714)
Q Consensus 696 ~~~g~-~~~~l~~~~~~ 711 (714)
++.|. +.+.|..+|+.
T Consensus 85 ~~~G~~~~~~l~~~i~~ 101 (101)
T cd02994 85 RYQGPRDKEDLISFIEE 101 (101)
T ss_pred EecCCCCHHHHHHHHhC
Confidence 88898 99999998863
|
TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC. |
| >cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.8e-13 Score=116.81 Aligned_cols=91 Identities=24% Similarity=0.378 Sum_probs=80.8
Q ss_pred hhHHhhhccCCCceEEEeecCCCccccccchHHHHHHhhCC----CcEEEEEecccCcchhhhCCccccceEEEEeCCeE
Q 005108 618 LEQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYP----SINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSR 693 (714)
Q Consensus 618 ~e~~~~~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~----~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~ 693 (714)
.++|...+... .+++.||++||++|+.+.|.++++..++. .+.|+.||++....+++.|+|.++||+++|++|+.
T Consensus 7 ~~~f~~~~~~~-~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~ 85 (102)
T cd03005 7 EDNFDHHIAEG-NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQVRGYPTLLLFKDGEK 85 (102)
T ss_pred HHHHHHHhhcC-CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCCCcCCEEEEEeCCCe
Confidence 35677776544 69999999999999999999999988874 48899999999999999999999999999999999
Q ss_pred EEEEcCC-CHHHHHHHH
Q 005108 694 MKEIVCP-SRDMLEHSV 709 (714)
Q Consensus 694 ~~~~~g~-~~~~l~~~~ 709 (714)
+.++.|. +.+.|+++|
T Consensus 86 ~~~~~G~~~~~~l~~~i 102 (102)
T cd03005 86 VDKYKGTRDLDSLKEFV 102 (102)
T ss_pred eeEeeCCCCHHHHHhhC
Confidence 9999999 888887764
|
Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia. |
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.45 E-value=4.1e-12 Score=135.14 Aligned_cols=236 Identities=18% Similarity=0.180 Sum_probs=195.8
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCH
Q 005108 307 PNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSP 386 (714)
Q Consensus 307 p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~ 386 (714)
|..+.....++.++...|-...|+..|++. +.+-....+|...|+..+|..+..+-++.+|+ +
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erl---------------emw~~vi~CY~~lg~~~kaeei~~q~lek~~d--~ 457 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERL---------------EMWDPVILCYLLLGQHGKAEEINRQELEKDPD--P 457 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhH---------------HHHHHHHHHHHHhcccchHHHHHHHHhcCCCc--c
Confidence 344566778999999999999999998664 56667778899999999999999888885544 4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCC
Q 005108 387 QLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPR 466 (714)
Q Consensus 387 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 466 (714)
.+|..+|.+....--|++|.++.+.. .+.+.+.+|......++|+++.++++..++++|-
T Consensus 458 ~lyc~LGDv~~d~s~yEkawElsn~~--------------------sarA~r~~~~~~~~~~~fs~~~~hle~sl~~npl 517 (777)
T KOG1128|consen 458 RLYCLLGDVLHDPSLYEKAWELSNYI--------------------SARAQRSLALLILSNKDFSEADKHLERSLEINPL 517 (777)
T ss_pred hhHHHhhhhccChHHHHHHHHHhhhh--------------------hHHHHHhhccccccchhHHHHHHHHHHHhhcCcc
Confidence 55655666666655566665555432 1445667777778889999999999999999999
Q ss_pred CHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Q 005108 467 NVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPN 546 (714)
Q Consensus 467 ~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 546 (714)
....|+.+ |.+..+.++++.|.++|..++.++|++.+.|+|++.+|.++++-.+|...++++++.+-+
T Consensus 518 q~~~wf~~------------G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~ 585 (777)
T KOG1128|consen 518 QLGTWFGL------------GCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ 585 (777)
T ss_pred chhHHHhc------------cHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC
Confidence 99999977 999999999999999999999999999999999999999999999999999999999988
Q ss_pred CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC--CCHHHHHHHHHH
Q 005108 547 YTKALLRRAASNSKLEKWADAVRDFEVLRRELP--DDNEIAESLFHA 591 (714)
Q Consensus 547 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p--~~~~~~~~L~~~ 591 (714)
+..+|.+.-.+..+.|.|++|++.|.+.+.+.. .|.++...+...
T Consensus 586 ~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~d~~vl~~iv~~ 632 (777)
T KOG1128|consen 586 HWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYKDDEVLLIIVRT 632 (777)
T ss_pred CCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcccchhhHHHHHH
Confidence 999999999999999999999999999987643 345555444443
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.45 E-value=1e-11 Score=117.80 Aligned_cols=178 Identities=19% Similarity=0.147 Sum_probs=153.0
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhC
Q 005108 369 SALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALG 448 (714)
Q Consensus 369 ~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 448 (714)
.+...+-.....+|+. ..+ ..++..+...|+-+.+..+..++...+|.+ ...+..+|...+..|
T Consensus 51 ~a~~al~~~~~~~p~d-~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d--------------~~ll~~~gk~~~~~g 114 (257)
T COG5010 51 GAAAALGAAVLRNPED-LSI-AKLATALYLRGDADSSLAVLQKSAIAYPKD--------------RELLAAQGKNQIRNG 114 (257)
T ss_pred HHHHHHHHHHhcCcch-HHH-HHHHHHHHhcccccchHHHHhhhhccCccc--------------HHHHHHHHHHHHHhc
Confidence 3555555666667763 344 668889999999999999999988888887 666777899999999
Q ss_pred cHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhC
Q 005108 449 RFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLG 528 (714)
Q Consensus 449 ~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 528 (714)
+|.+|+..++++..+.|++.++|..+ |.+|.+.|++++|...|.+++++.|+++.++.|+|..|.-.|
T Consensus 115 ~~~~A~~~~rkA~~l~p~d~~~~~~l------------gaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~g 182 (257)
T COG5010 115 NFGEAVSVLRKAARLAPTDWEAWNLL------------GAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRG 182 (257)
T ss_pred chHHHHHHHHHHhccCCCChhhhhHH------------HHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcC
Confidence 99999999999999999999999877 999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHH
Q 005108 529 QWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVL 574 (714)
Q Consensus 529 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~a 574 (714)
+++.|..++..+....+.+..+..+++.+...+|++++|.....+-
T Consensus 183 d~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~e 228 (257)
T COG5010 183 DLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQE 228 (257)
T ss_pred CHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcccc
Confidence 9999999999998888888999999999999999999998766543
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.7e-10 Score=115.19 Aligned_cols=275 Identities=19% Similarity=0.141 Sum_probs=209.9
Q ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHH
Q 005108 237 ICGGDAEELKRMGNELYRKGCFGEALSMYDKAISLAPR-NAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQR 315 (714)
Q Consensus 237 ~~p~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~ 315 (714)
..+...-.+..-+.+.-+.|+++.|-.++.++-+..++ .......++..+...|+++.|.....++++..|.+..+...
T Consensus 113 ~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrL 192 (400)
T COG3071 113 HGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRL 192 (400)
T ss_pred cCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHH
Confidence 34445567777788899999999999999999998444 35677888999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHhhcC--CCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 005108 316 LGSLLVRLGQVENARRHLCLSGQ--QADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRV 393 (714)
Q Consensus 316 la~~~~~~g~~~~A~~~~~~al~--~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la 393 (714)
...+|.+.|+|.+...++.++.+ .....+...++.- .+...-......+..+. +..+-+-+...-...+.+...++
T Consensus 193 a~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~-a~~glL~q~~~~~~~~g-L~~~W~~~pr~lr~~p~l~~~~a 270 (400)
T COG3071 193 ALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQ-AWEGLLQQARDDNGSEG-LKTWWKNQPRKLRNDPELVVAYA 270 (400)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHH-HHHHHHHHHhccccchH-HHHHHHhccHHhhcChhHHHHHH
Confidence 99999999999999999988766 2333332222211 11111111111111111 11111111111133566777789
Q ss_pred HHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHH
Q 005108 394 EALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVL 473 (714)
Q Consensus 394 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 473 (714)
.-+.++|+.++|.+..+++++..-+. . ...-.-...-++...=++..++.++..|+++..+..
T Consensus 271 ~~li~l~~~~~A~~~i~~~Lk~~~D~---------------~--L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~t 333 (400)
T COG3071 271 ERLIRLGDHDEAQEIIEDALKRQWDP---------------R--LCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLST 333 (400)
T ss_pred HHHHHcCChHHHHHHHHHHHHhccCh---------------h--HHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHH
Confidence 99999999999999999999887775 1 111122345688889999999999999999988877
Q ss_pred HHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Q 005108 474 LNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLI 543 (714)
Q Consensus 474 l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 543 (714)
+ |..+++.+.|.+|..+|+.+++..| +...|..+|.++.++|+.++|.+.+++++.+
T Consensus 334 L------------G~L~~k~~~w~kA~~~leaAl~~~~-s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 334 L------------GRLALKNKLWGKASEALEAALKLRP-SASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred H------------HHHHHHhhHHHHHHHHHHHHHhcCC-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 6 9999999999999999999999987 5678899999999999999999999999853
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.5e-12 Score=113.25 Aligned_cols=111 Identities=14% Similarity=0.123 Sum_probs=101.0
Q ss_pred HHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHH
Q 005108 486 RGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWA 565 (714)
Q Consensus 486 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 565 (714)
.|..++..|++++|...|+-+..++|.+...|++||.|+..+|+|++|+..|.+++.++|+++.+++++|.|++..|+.+
T Consensus 41 ~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~ 120 (157)
T PRK15363 41 YAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVC 120 (157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHH
Confidence 39999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Q 005108 566 DAVRDFEVLRRELPDDNEIAESLFHAQVSLK 596 (714)
Q Consensus 566 eA~~~~~~al~~~p~~~~~~~~L~~~~~~l~ 596 (714)
.|.+.|+.++...-++++......++...+.
T Consensus 121 ~A~~aF~~Ai~~~~~~~~~~~l~~~A~~~L~ 151 (157)
T PRK15363 121 YAIKALKAVVRICGEVSEHQILRQRAEKMLQ 151 (157)
T ss_pred HHHHHHHHHHHHhccChhHHHHHHHHHHHHH
Confidence 9999999999988655555555555554443
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.43 E-value=4.2e-12 Score=135.03 Aligned_cols=223 Identities=17% Similarity=0.152 Sum_probs=176.8
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 005108 238 CGGDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLG 317 (714)
Q Consensus 238 ~p~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la 317 (714)
-|.-......++..+...|-..+|+..|++. ..|.....||...|+..+|.....+-++ .|.++..|..+|
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erl--------emw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LG 464 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERL--------EMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLG 464 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhH--------HHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhh
Confidence 3445566677888888888888888888875 5666778888888888888888888877 555677777777
Q ss_pred HHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 005108 318 SLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALL 397 (714)
Q Consensus 318 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~ 397 (714)
.+....--|++|.++.+.. +......+|....
T Consensus 465 Dv~~d~s~yEkawElsn~~------------------------------------------------sarA~r~~~~~~~ 496 (777)
T KOG1128|consen 465 DVLHDPSLYEKAWELSNYI------------------------------------------------SARAQRSLALLIL 496 (777)
T ss_pred hhccChHHHHHHHHHhhhh------------------------------------------------hHHHHHhhccccc
Confidence 7776666666665554322 1222223455556
Q ss_pred HcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhH
Q 005108 398 KLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNV 477 (714)
Q Consensus 398 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l 477 (714)
..++|+++.++++..++++|-. ...|+.+|.+..+.++++.|.++|..++.++|++.+.|..+
T Consensus 497 ~~~~fs~~~~hle~sl~~nplq--------------~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNl--- 559 (777)
T KOG1128|consen 497 SNKDFSEADKHLERSLEINPLQ--------------LGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNL--- 559 (777)
T ss_pred cchhHHHHHHHHHHHhhcCccc--------------hhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhh---
Confidence 6788889999999999888887 77899999999999999999999999999999999998876
Q ss_pred HHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Q 005108 478 KLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLI 543 (714)
Q Consensus 478 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 543 (714)
+..|.+.++-.+|...++++++.+-.+..+|.|.-.+..+.|.+++|++.|.+.+.+
T Consensus 560 ---------s~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 560 ---------STAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred ---------hHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 888999999999999999999988888889999999999999999999999988775
|
|
| >cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.8e-13 Score=117.21 Aligned_cols=92 Identities=14% Similarity=0.149 Sum_probs=79.9
Q ss_pred hHHhhhccCCCceEEEeecCCCccccccchHH---HHHHhhCC-CcEEEEEeccc----CcchhhhCCccccceEEEEe-
Q 005108 619 EQFRAAVSLPGVSVVHFKSASNLHCKQISPYV---ETLCGRYP-SINFLKVDIDE----SPGVAHAENVRIVPTFKIYK- 689 (714)
Q Consensus 619 e~~~~~i~~~~~~vv~f~a~~c~~C~~~~p~l---~~l~~~~~-~~~~~~vd~d~----~~~l~~~~~v~~~Pt~~~~~- 689 (714)
+.+.+++...++++|.||++||++|+.+.|.+ .++...+. .+.++.||+++ ..+++++|+|.++||+++|+
T Consensus 2 ~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~~~~ 81 (104)
T cd02953 2 AALAQALAQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGVFGPPTYLFYGP 81 (104)
T ss_pred HHHHHHHHcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEEECC
Confidence 35666777788999999999999999999887 56777766 68899999987 56889999999999999997
Q ss_pred -CCeEEEEEcCC-CHHHHHHHHh
Q 005108 690 -NGSRMKEIVCP-SRDMLEHSVR 710 (714)
Q Consensus 690 -~G~~~~~~~g~-~~~~l~~~~~ 710 (714)
+|+++.++.|. +.++|+++|+
T Consensus 82 ~~g~~~~~~~G~~~~~~l~~~l~ 104 (104)
T cd02953 82 GGEPEPLRLPGFLTADEFLEALE 104 (104)
T ss_pred CCCCCCcccccccCHHHHHHHhC
Confidence 89999999999 9999998874
|
It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes. |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=5.2e-12 Score=112.15 Aligned_cols=105 Identities=12% Similarity=-0.001 Sum_probs=100.6
Q ss_pred hcCCC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Q 005108 234 RGGIC-GGDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRA 312 (714)
Q Consensus 234 ~~~~~-p~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a 312 (714)
+..+. +++-+.++.+|..++..|++++|...|+-+...+|.+...|++||.|+..+|+|++|+..|.+++.++|+++..
T Consensus 26 l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~ 105 (157)
T PRK15363 26 LLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQA 105 (157)
T ss_pred HHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchH
Confidence 33466 78889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhhcC
Q 005108 313 HQRLGSLLVRLGQVENARRHLCLSGQ 338 (714)
Q Consensus 313 ~~~la~~~~~~g~~~~A~~~~~~al~ 338 (714)
++++|.+++..|+.+.|++.|+.++.
T Consensus 106 ~~~ag~c~L~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 106 PWAAAECYLACDNVCYAIKALKAVVR 131 (157)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999999999876
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.4e-11 Score=116.74 Aligned_cols=170 Identities=16% Similarity=0.131 Sum_probs=153.9
Q ss_pred CHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHH
Q 005108 401 QLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLV 480 (714)
Q Consensus 401 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~ 480 (714)
+...+...+-+....+|++ ..+ ..++..+...|+-+.+..+..++....|.+.++...+
T Consensus 48 q~~~a~~al~~~~~~~p~d--------------~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~------ 106 (257)
T COG5010 48 QTQGAAAALGAAVLRNPED--------------LSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQ------ 106 (257)
T ss_pred hhhHHHHHHHHHHhcCcch--------------HHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHH------
Confidence 3344666666677788887 556 8889999999999999999999999999998887554
Q ss_pred HHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005108 481 ARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSK 560 (714)
Q Consensus 481 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 560 (714)
|...+..|+|.+|+..++++..+.|+|.++|..+|.+|.+.|++++|...|.+++++.|+++.+..++|..|.-
T Consensus 107 ------gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L 180 (257)
T COG5010 107 ------GKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLL 180 (257)
T ss_pred ------HHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhh
Q 005108 561 LEKWADAVRDFEVLRRELPDDNEIAESLFHAQVSLKK 597 (714)
Q Consensus 561 ~g~~~eA~~~~~~al~~~p~~~~~~~~L~~~~~~l~~ 597 (714)
.|+++.|..++..+...-+.+..+.++|..+......
T Consensus 181 ~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~ 217 (257)
T COG5010 181 RGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGD 217 (257)
T ss_pred cCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCC
Confidence 9999999999999999999999999999887665544
|
|
| >TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative | Back alignment and domain information |
|---|
Probab=99.41 E-value=9.8e-13 Score=114.85 Aligned_cols=93 Identities=10% Similarity=0.124 Sum_probs=77.3
Q ss_pred hhhHHhhhccCCCceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCc-----------chhhhC----Cccc
Q 005108 617 SLEQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESP-----------GVAHAE----NVRI 681 (714)
Q Consensus 617 ~~e~~~~~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~-----------~l~~~~----~v~~ 681 (714)
+.+++...+...+..+++|+++||++|+.+.|.|+++.++ .++.+++||+|... ++.+.| +|++
T Consensus 12 t~~~~~~~i~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~-~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~~i~~ 90 (122)
T TIGR01295 12 TVVRALEALDKKETATFFIGRKTCPYCRKFSGTLSGVVAQ-TKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIPTSFMG 90 (122)
T ss_pred CHHHHHHHHHcCCcEEEEEECCCChhHHHHhHHHHHHHHh-cCCcEEEEECCCccCcCcccHHHHHHHHHHcCCcccCCC
Confidence 3456777887888899999999999999999999999988 45778999998543 333454 5667
Q ss_pred cceEEEEeCCeEEEEEcCC--CHHHHHHHHh
Q 005108 682 VPTFKIYKNGSRMKEIVCP--SRDMLEHSVR 710 (714)
Q Consensus 682 ~Pt~~~~~~G~~~~~~~g~--~~~~l~~~~~ 710 (714)
+|||++|++|+.+.+++|. +.++|++++.
T Consensus 91 ~PT~v~~k~Gk~v~~~~G~~~~~~~l~~~~~ 121 (122)
T TIGR01295 91 TPTFVHITDGKQVSVRCGSSTTAQELQDIAA 121 (122)
T ss_pred CCEEEEEeCCeEEEEEeCCCCCHHHHHHHhh
Confidence 9999999999999999994 7999988764
|
This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris. |
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.6e-10 Score=122.52 Aligned_cols=271 Identities=14% Similarity=0.098 Sum_probs=193.4
Q ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHhcCCCcHH
Q 005108 237 ICGGDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLG-----RIGEAVKECEEAVRLDPNYWR 311 (714)
Q Consensus 237 ~~p~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g-----~~~~A~~~~~~al~~~p~~~~ 311 (714)
...+....+-.+|..+++.|++++|...|...|+.+|+|...|..+..+..... +.+.-...|++.....|....
T Consensus 33 ~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~ 112 (517)
T PF12569_consen 33 QILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDA 112 (517)
T ss_pred hCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccc
Confidence 445667888899999999999999999999999999999999999998884333 567778888888877776432
Q ss_pred HHHHHHHHHHHcCCHHH-HHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHH---HHHc-------
Q 005108 312 AHQRLGSLLVRLGQVEN-ARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDA---AIAA------- 380 (714)
Q Consensus 312 a~~~la~~~~~~g~~~~-A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~---al~~------- 380 (714)
. ..+...+..-..+.. +..++...+...-|.....+..+ |.......-....+.. .++.
T Consensus 113 ~-~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~L---------y~d~~K~~~i~~l~~~~~~~l~~~~~~~~~ 182 (517)
T PF12569_consen 113 P-RRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPL---------YKDPEKAAIIESLVEEYVNSLESNGSFSNG 182 (517)
T ss_pred h-hHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHH---------HcChhHHHHHHHHHHHHHHhhcccCCCCCc
Confidence 2 222222222223333 33344555555555554444333 1111111111122222 1111
Q ss_pred ------CCCCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHH
Q 005108 381 ------GADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAV 454 (714)
Q Consensus 381 ------~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 454 (714)
.|.....+++.+|..|...|++++|+++++++++..|.. ...|...|.++.+.|++++|.
T Consensus 183 ~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~--------------~ely~~KarilKh~G~~~~Aa 248 (517)
T PF12569_consen 183 DDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTL--------------VELYMTKARILKHAGDLKEAA 248 (517)
T ss_pred cccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCc--------------HHHHHHHHHHHHHCCCHHHHH
Confidence 111112344668999999999999999999999999998 889999999999999999999
Q ss_pred HHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccC--CCC-------HHHHHHHHHHHH
Q 005108 455 TAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFD--PSN-------SVLYCNRAACWF 525 (714)
Q Consensus 455 ~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~-------~~~~~~la~~~~ 525 (714)
+.++.+..+|..+--.-... +..+++.|+.++|.+.+..-.+.+ |.. .+.....|.+|.
T Consensus 249 ~~~~~Ar~LD~~DRyiNsK~------------aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~ 316 (517)
T PF12569_consen 249 EAMDEARELDLADRYINSKC------------AKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYL 316 (517)
T ss_pred HHHHHHHhCChhhHHHHHHH------------HHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHH
Confidence 99999999999876554443 778899999999999987765544 211 234455799999
Q ss_pred HhCCHHHHHHHHHHHHHh
Q 005108 526 KLGQWERSVEDSNQALLI 543 (714)
Q Consensus 526 ~~g~~~~A~~~~~~al~~ 543 (714)
+.|++..|++.|..+.+.
T Consensus 317 r~~~~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 317 RQGDYGLALKRFHAVLKH 334 (517)
T ss_pred HHhhHHHHHHHHHHHHHH
Confidence 999999999999988875
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.4e-09 Score=107.53 Aligned_cols=340 Identities=12% Similarity=0.065 Sum_probs=193.8
Q ss_pred CCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHH
Q 005108 236 GICGGDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQR 315 (714)
Q Consensus 236 ~~~p~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~ 315 (714)
..+..+...|...+.+-++......|..++++|+.+-|.-...|+.....--.+|+...|.+.|++-++..|+ ..+|..
T Consensus 101 dvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~-eqaW~s 179 (677)
T KOG1915|consen 101 DVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPD-EQAWLS 179 (677)
T ss_pred hcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCc-HHHHHH
Confidence 3455677888889999999999999999999999999988888888888888888888888888888887775 345555
Q ss_pred HHHHHHHcCCHHHHHHHHHhhcC-CCChHHHHHHHHHHH----------------------------HHHHhHHHHHcCC
Q 005108 316 LGSLLVRLGQVENARRHLCLSGQ-QADPTEVHRLQVVEK----------------------------HLSKCTDARKVGD 366 (714)
Q Consensus 316 la~~~~~~g~~~~A~~~~~~al~-~~~~~~~~~l~~~~~----------------------------~~~~a~~~~~~g~ 366 (714)
....-.+.+.++.|...|++.+- .++..++......+. +...+.--...+.
T Consensus 180 fI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE 259 (677)
T KOG1915|consen 180 FIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKE 259 (677)
T ss_pred HHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444445444444433 222222221111100 0001111112333
Q ss_pred HHHHHHHHHHHHH--------------------------------------------cCCCCCHHHHHHHHHHHHHcCCH
Q 005108 367 WKSALREGDAAIA--------------------------------------------AGADFSPQLSMCRVEALLKLHQL 402 (714)
Q Consensus 367 ~~~Al~~~~~al~--------------------------------------------~~p~~~~~~~~~la~~~~~~g~~ 402 (714)
++.|..+|+-++. .+|- +.+.|.....+....|+.
T Consensus 260 ~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~-nYDsWfdylrL~e~~g~~ 338 (677)
T KOG1915|consen 260 YERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPY-NYDSWFDYLRLEESVGDK 338 (677)
T ss_pred HHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCC-CchHHHHHHHHHHhcCCH
Confidence 4444444444443 3443 233344455666667888
Q ss_pred HHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHH-HHHHhCcHHHHHHHHHHHhccCCCC----HHHHHHHHhH
Q 005108 403 EDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQ-IEMALGRFENAVTAAEKAGQIDPRN----VEVAVLLNNV 477 (714)
Q Consensus 403 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~l 477 (714)
+.-.+.|++++..-|.-. ........ .+.|.+.+. .-+...+.+.+.+.|+.++++-|.. ...|.++...
T Consensus 339 ~~Ire~yErAIanvpp~~---ekr~W~RY--IYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~f 413 (677)
T KOG1915|consen 339 DRIRETYERAIANVPPAS---EKRYWRRY--IYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQF 413 (677)
T ss_pred HHHHHHHHHHHccCCchh---HHHHHHHH--HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 888888888887665431 11111111 333433332 2244788999999999999998864 4455554221
Q ss_pred H-------HH--------------HHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHH
Q 005108 478 K-------LV--------------ARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVED 536 (714)
Q Consensus 478 ~-------~~--------------~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 536 (714)
. .+ ..++....+-.++++++....+|++-|+..|.+..+|...|.+-..+|+++.|...
T Consensus 414 eIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRai 493 (677)
T KOG1915|consen 414 EIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAI 493 (677)
T ss_pred HHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHH
Confidence 0 00 00111122334455666666666666666666666666666666666666666666
Q ss_pred HHHHHHhCCCCHHH--HHHHHHHHHHhccHHHHHHHHHHHHHhCCCCH
Q 005108 537 SNQALLIQPNYTKA--LLRRAASNSKLEKWADAVRDFEVLRRELPDDN 582 (714)
Q Consensus 537 ~~~al~~~p~~~~~--~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~ 582 (714)
|+-|+....-+..- |-.....-...|.+++|...|+++|+..+..+
T Consensus 494 felAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~k 541 (677)
T KOG1915|consen 494 FELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVK 541 (677)
T ss_pred HHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccch
Confidence 66666533222222 22222233455666666666666666665544
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.5e-11 Score=135.16 Aligned_cols=148 Identities=12% Similarity=0.024 Sum_probs=135.5
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHH
Q 005108 377 AIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTA 456 (714)
Q Consensus 377 al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 456 (714)
.....|. ....+.++|.+....|.+++|+..++.++++.|++ ..++..++.++.+++++++|+..
T Consensus 78 ~~~~~~~-~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~--------------~~a~~~~a~~L~~~~~~eeA~~~ 142 (694)
T PRK15179 78 YVRRYPH-TELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDS--------------SEAFILMLRGVKRQQGIEAGRAE 142 (694)
T ss_pred HHHhccc-cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc--------------HHHHHHHHHHHHHhccHHHHHHH
Confidence 3334454 36778889999999999999999999999999999 88999999999999999999999
Q ss_pred HHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHH
Q 005108 457 AEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVED 536 (714)
Q Consensus 457 ~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 536 (714)
+++++..+|++...++.+ |.++.+.|++++|+.+|++++..+|+++.++..+|.++.+.|+.++|...
T Consensus 143 ~~~~l~~~p~~~~~~~~~------------a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~ 210 (694)
T PRK15179 143 IELYFSGGSSSAREILLE------------AKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDV 210 (694)
T ss_pred HHHHhhcCCCCHHHHHHH------------HHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999999877 99999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCHHHH
Q 005108 537 SNQALLIQPNYTKAL 551 (714)
Q Consensus 537 ~~~al~~~p~~~~~~ 551 (714)
|+++++...+-...|
T Consensus 211 ~~~a~~~~~~~~~~~ 225 (694)
T PRK15179 211 LQAGLDAIGDGARKL 225 (694)
T ss_pred HHHHHHhhCcchHHH
Confidence 999999766555443
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.40 E-value=6.8e-11 Score=110.89 Aligned_cols=176 Identities=16% Similarity=0.082 Sum_probs=155.3
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHH
Q 005108 359 TDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFF 438 (714)
Q Consensus 359 ~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~ 438 (714)
......++.+.|..+++......|.+ ..+....|..+...|++++|+++|+..++.+|.+ ..++.
T Consensus 60 IAAld~~~~~lAq~C~~~L~~~fp~S-~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~--------------~v~~K 124 (289)
T KOG3060|consen 60 IAALDTGRDDLAQKCINQLRDRFPGS-KRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTD--------------TVIRK 124 (289)
T ss_pred HHHHHhcchHHHHHHHHHHHHhCCCC-hhHHHHHHHHHHHhhchhhHHHHHHHHhccCcch--------------hHHHH
Confidence 33566788999999999988888774 4555558999999999999999999999999998 66677
Q ss_pred HHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHH
Q 005108 439 VRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYC 518 (714)
Q Consensus 439 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 518 (714)
..-.+...+|+.-+|++.+.+.++..+.+.++|..+ +.+|+..|+|++|.-+|++++-++|.++..+.
T Consensus 125 RKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eL------------aeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~ 192 (289)
T KOG3060|consen 125 RKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHEL------------AEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQ 192 (289)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHH------------HHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHH
Confidence 777888889999999999999999999999999977 99999999999999999999999999999999
Q ss_pred HHHHHHHHhC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 005108 519 NRAACWFKLG---QWERSVEDSNQALLIQPNYTKALLRRAASNSKL 561 (714)
Q Consensus 519 ~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 561 (714)
.+|.+++-+| +++-|.++|.++++++|.+..+++.+-.+...+
T Consensus 193 rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~~l 238 (289)
T KOG3060|consen 193 RLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLCGSAL 238 (289)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHHH
Confidence 9999998877 577899999999999998888887776665443
|
|
| >cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus | Back alignment and domain information |
|---|
Probab=99.40 E-value=7.9e-13 Score=113.06 Aligned_cols=93 Identities=19% Similarity=0.277 Sum_probs=80.2
Q ss_pred hHHhhhccCCCceEEEeecCCCccccccchHHHHHHhhCC----CcEEEEEecccCcchhhhCCccccceEEEEeCCeEE
Q 005108 619 EQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYP----SINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRM 694 (714)
Q Consensus 619 e~~~~~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~----~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~ 694 (714)
+.|..+. ..+++++.||++||++|+.+.|.++++...+. ++.+..+|++..+.+++.|+|.++||+++|++|. +
T Consensus 7 ~~~~~~~-~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I~~~Pt~~l~~~~~-~ 84 (104)
T cd03000 7 DSFKDVR-KEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGVRGYPTIKLLKGDL-A 84 (104)
T ss_pred hhhhhhc-cCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCCccccEEEEEcCCC-c
Confidence 4555543 46799999999999999999999999998873 3888999999999999999999999999998774 5
Q ss_pred EEEcCC-CHHHHHHHHhhhc
Q 005108 695 KEIVCP-SRDMLEHSVRHYS 713 (714)
Q Consensus 695 ~~~~g~-~~~~l~~~~~~~~ 713 (714)
.++.|. +.+.|.+++++.+
T Consensus 85 ~~~~G~~~~~~l~~~~~~~~ 104 (104)
T cd03000 85 YNYRGPRTKDDIVEFANRVA 104 (104)
T ss_pred eeecCCCCHHHHHHHHHhhC
Confidence 678888 9999999998763
|
The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase. |
| >TIGR01068 thioredoxin thioredoxin | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.3e-12 Score=111.37 Aligned_cols=94 Identities=26% Similarity=0.504 Sum_probs=83.6
Q ss_pred hHHhhhccC-CCceEEEeecCCCccccccchHHHHHHhhCC-CcEEEEEecccCcchhhhCCccccceEEEEeCCeEEEE
Q 005108 619 EQFRAAVSL-PGVSVVHFKSASNLHCKQISPYVETLCGRYP-SINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKE 696 (714)
Q Consensus 619 e~~~~~i~~-~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~-~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~~ 696 (714)
+++...+.. .+.+++.||++||+.|+.+.|.+.++..+++ ++.|+.+|++....+++.|+|..+|++++|++|+.+.+
T Consensus 4 ~~~~~~~~~~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g~~~~~ 83 (101)
T TIGR01068 4 ANFDETIASSDKPVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPDIAAKYGIRSIPTLLLFKNGKEVDR 83 (101)
T ss_pred HHHHHHHhhcCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCCcCCEEEEEeCCcEeee
Confidence 345554444 4599999999999999999999999998887 59999999999999999999999999999999999999
Q ss_pred EcCC-CHHHHHHHHhhh
Q 005108 697 IVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 697 ~~g~-~~~~l~~~~~~~ 712 (714)
+.|. +.+.|.++|++.
T Consensus 84 ~~g~~~~~~l~~~l~~~ 100 (101)
T TIGR01068 84 SVGALPKAALKQLINKN 100 (101)
T ss_pred ecCCCCHHHHHHHHHhh
Confidence 9999 889999999864
|
Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model. |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=6.7e-12 Score=131.87 Aligned_cols=116 Identities=26% Similarity=0.466 Sum_probs=111.0
Q ss_pred HHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Q 005108 483 ARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLE 562 (714)
Q Consensus 483 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 562 (714)
+...|..++..|+|++|+.+|+++++++|++..+|+++|.+|.++|++++|+.+++++++++|++..+|+.+|.+|..+|
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 34569999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhh
Q 005108 563 KWADAVRDFEVLRRELPDDNEIAESLFHAQVSLKKS 598 (714)
Q Consensus 563 ~~~eA~~~~~~al~~~p~~~~~~~~L~~~~~~l~~~ 598 (714)
++++|+.+|+++++++|++..+...+..+...+...
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~~~ 120 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSRFTKLIKECDEKIAEE 120 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999998888654
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.39 E-value=7.7e-11 Score=112.53 Aligned_cols=295 Identities=15% Similarity=0.069 Sum_probs=224.4
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHH
Q 005108 251 ELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVRLGQVENAR 330 (714)
Q Consensus 251 ~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~ 330 (714)
.+.+..+|.+|++++..-.+..|.+-..+..+|.||+...+|.+|..+|++.-.+.|......+..+..+++.+.+.+|+
T Consensus 19 ~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADAL 98 (459)
T KOG4340|consen 19 RLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADAL 98 (459)
T ss_pred HHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHH
Confidence 34678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHcCCHHHHHHHh
Q 005108 331 RHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGA-DFSPQLSMCRVEALLKLHQLEDAESSL 409 (714)
Q Consensus 331 ~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p-~~~~~~~~~la~~~~~~g~~~~A~~~~ 409 (714)
.....+... +........ -.+.+.+..+|+..+....++ -| +.......+.|.+.++.|++++|++-|
T Consensus 99 rV~~~~~D~--~~L~~~~lq-----LqaAIkYse~Dl~g~rsLveQ----lp~en~Ad~~in~gCllykegqyEaAvqkF 167 (459)
T KOG4340|consen 99 RVAFLLLDN--PALHSRVLQ-----LQAAIKYSEGDLPGSRSLVEQ----LPSENEADGQINLGCLLYKEGQYEAAVQKF 167 (459)
T ss_pred HHHHHhcCC--HHHHHHHHH-----HHHHHhcccccCcchHHHHHh----ccCCCccchhccchheeeccccHHHHHHHH
Confidence 998777643 211111111 123334556666666554443 34 345666777999999999999999999
Q ss_pred hccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhcc----CCCC--------HHHH-----H
Q 005108 410 SNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQI----DPRN--------VEVA-----V 472 (714)
Q Consensus 410 ~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~--------~~~~-----~ 472 (714)
+.+++..--. ...-++++.+++..++++.|+++..+.++. .|+. +++. .
T Consensus 168 qaAlqvsGyq--------------pllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~ 233 (459)
T KOG4340|consen 168 QAALQVSGYQ--------------PLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTL 233 (459)
T ss_pred HHHHhhcCCC--------------chhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchH
Confidence 9999987776 557889999999999999999988776643 3321 1111 1
Q ss_pred HHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccC--CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH
Q 005108 473 LLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFD--PSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKA 550 (714)
Q Consensus 473 ~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 550 (714)
.+..-..++.+.-++.++++.++++.|.+.+..+--.. .-++..+.+++..-. .+++.+..+-++-.++++|--.+.
T Consensus 234 ~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~nPfP~ET 312 (459)
T KOG4340|consen 234 VLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQNPFPPET 312 (459)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHHhcCCCChHH
Confidence 11222345556667899999999999988775543221 225778888876543 466777888888888999977788
Q ss_pred HHHHHHHHHHhccHHHHHHHH
Q 005108 551 LLRRAASNSKLEKWADAVRDF 571 (714)
Q Consensus 551 ~~~la~~~~~~g~~~eA~~~~ 571 (714)
+-++-.+|++..-|+.|...+
T Consensus 313 FANlLllyCKNeyf~lAADvL 333 (459)
T KOG4340|consen 313 FANLLLLYCKNEYFDLAADVL 333 (459)
T ss_pred HHHHHHHHhhhHHHhHHHHHH
Confidence 888888999988888777654
|
|
| >TIGR01126 pdi_dom protein disulfide-isomerase domain | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.2e-12 Score=111.85 Aligned_cols=94 Identities=22% Similarity=0.262 Sum_probs=84.6
Q ss_pred hHHhhhccCCCceEEEeecCCCccccccchHHHHHHhhCC---CcEEEEEecccCcchhhhCCccccceEEEEeCCeEEE
Q 005108 619 EQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYP---SINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMK 695 (714)
Q Consensus 619 e~~~~~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~---~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~ 695 (714)
+.|...+....++++.||++||+.|+.+.|.++++...+. ++.|+.+|+++...+++.|+|..+|++++|++|+.+.
T Consensus 4 ~~~~~~~~~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~P~~~~~~~~~~~~ 83 (102)
T TIGR01126 4 SNFDDIVLSNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDLASRFGVSGFPTIKFFPKGKKPV 83 (102)
T ss_pred hhHHHHhccCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHHHHhCCCCcCCEEEEecCCCcce
Confidence 4566666677789999999999999999999999988886 4999999999999999999999999999998888788
Q ss_pred EEcCC-CHHHHHHHHhhh
Q 005108 696 EIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 696 ~~~g~-~~~~l~~~~~~~ 712 (714)
++.|. +.++|+.+|+++
T Consensus 84 ~~~g~~~~~~l~~~i~~~ 101 (102)
T TIGR01126 84 DYEGGRDLEAIVEFVNEK 101 (102)
T ss_pred eecCCCCHHHHHHHHHhc
Confidence 89999 999999999875
|
This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK. |
| >cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related) | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.2e-12 Score=112.24 Aligned_cols=91 Identities=21% Similarity=0.278 Sum_probs=80.9
Q ss_pred hHHhhhccCCCceEEEeecCCCccccccchHHHHHHhhCC---CcEEEEEeccc--CcchhhhCCccccceEEEEeCCeE
Q 005108 619 EQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYP---SINFLKVDIDE--SPGVAHAENVRIVPTFKIYKNGSR 693 (714)
Q Consensus 619 e~~~~~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~---~~~~~~vd~d~--~~~l~~~~~v~~~Pt~~~~~~G~~ 693 (714)
..+...+...+.++|.||++||++|+.+.|.++++...+. .+.|+.+|++. ...++..|+|+++||+++|++|++
T Consensus 8 ~~~~~~~~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~Pt~~~~~~g~~ 87 (104)
T cd02997 8 EDFRKFLKKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKGFPTFKYFENGKF 87 (104)
T ss_pred HhHHHHHhhCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCccccEEEEEeCCCe
Confidence 4666677777799999999999999999999999988775 37888999998 889999999999999999999999
Q ss_pred EEEEcCC-CHHHHHHHH
Q 005108 694 MKEIVCP-SRDMLEHSV 709 (714)
Q Consensus 694 ~~~~~g~-~~~~l~~~~ 709 (714)
+.++.|. +.+.|.++|
T Consensus 88 ~~~~~g~~~~~~l~~~l 104 (104)
T cd02997 88 VEKYEGERTAEDIIEFM 104 (104)
T ss_pred eEEeCCCCCHHHHHhhC
Confidence 9999998 888887764
|
PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=99.38 E-value=1e-11 Score=112.12 Aligned_cols=119 Identities=19% Similarity=0.261 Sum_probs=111.0
Q ss_pred HHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHH
Q 005108 407 SSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARAR 486 (714)
Q Consensus 407 ~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~ 486 (714)
+.|++++..+|++ ....+.+|..+...|++++|+..+++++..+|.+..++..+
T Consensus 4 ~~~~~~l~~~p~~--------------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l------------ 57 (135)
T TIGR02552 4 ATLKDLLGLDSEQ--------------LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGL------------ 57 (135)
T ss_pred hhHHHHHcCChhh--------------HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHH------------
Confidence 4577888899988 77889999999999999999999999999999999998876
Q ss_pred HhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHH
Q 005108 487 GNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKAL 551 (714)
Q Consensus 487 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 551 (714)
|.++...|++++|+.+|+++++.+|.++..++.+|.+|...|++++|+..|+++++++|++....
T Consensus 58 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 58 AACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYS 122 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 99999999999999999999999999999999999999999999999999999999999887543
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PTZ00443 Thioredoxin domain-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.3e-12 Score=125.52 Aligned_cols=95 Identities=18% Similarity=0.242 Sum_probs=84.8
Q ss_pred hhhHHhhhccC-----CCceEEEeecCCCccccccchHHHHHHhhCCC-cEEEEEecccCcchhhhCCccccceEEEEeC
Q 005108 617 SLEQFRAAVSL-----PGVSVVHFKSASNLHCKQISPYVETLCGRYPS-INFLKVDIDESPGVAHAENVRIVPTFKIYKN 690 (714)
Q Consensus 617 ~~e~~~~~i~~-----~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~-~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~ 690 (714)
+.+.|+..+.. .++++|.||++||++|+.+.|.++++..++++ +.|.+||+++.++++++|+|.++||+++|++
T Consensus 36 t~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~~~l~~~~~I~~~PTl~~f~~ 115 (224)
T PTZ00443 36 NDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRALNLAKRFAIKGYPTLLLFDK 115 (224)
T ss_pred CHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCcccHHHHHHcCCCcCCEEEEEEC
Confidence 44577776532 46899999999999999999999999999975 8899999999999999999999999999999
Q ss_pred CeEEEEEcCC-CHHHHHHHHhh
Q 005108 691 GSRMKEIVCP-SRDMLEHSVRH 711 (714)
Q Consensus 691 G~~~~~~~g~-~~~~l~~~~~~ 711 (714)
|+.+....|. +.+.|.+++..
T Consensus 116 G~~v~~~~G~~s~e~L~~fi~~ 137 (224)
T PTZ00443 116 GKMYQYEGGDRSTEKLAAFALG 137 (224)
T ss_pred CEEEEeeCCCCCHHHHHHHHHH
Confidence 9999888887 99999998875
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.1e-12 Score=126.08 Aligned_cols=271 Identities=17% Similarity=0.110 Sum_probs=182.7
Q ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHh
Q 005108 283 AAALTGLGRIGEAVKECEEAVRLDPNY----WRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKC 358 (714)
Q Consensus 283 a~~~~~~g~~~~A~~~~~~al~~~p~~----~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a 358 (714)
|.-++++|++...+..|+.|++...++ ...|..||..|..+++|++|+++-..-+. +
T Consensus 24 GERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDlt---------l---------- 84 (639)
T KOG1130|consen 24 GERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLT---------L---------- 84 (639)
T ss_pred HHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHH---------H----------
Confidence 667889999999999999999988776 34678888999999999988886422110 0
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHH
Q 005108 359 TDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFF 438 (714)
Q Consensus 359 ~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~ 438 (714)
...+|+- . + ......++|+.+--+|.|++|+.+..+-+.+.. .+.+.+.+..++|
T Consensus 85 --ar~lgdk---------l---G---EAKssgNLGNtlKv~G~fdeA~~cc~rhLd~ar--------eLgDrv~e~RAlY 139 (639)
T KOG1130|consen 85 --ARLLGDK---------L---G---EAKSSGNLGNTLKVKGAFDEALTCCFRHLDFAR--------ELGDRVLESRALY 139 (639)
T ss_pred --HHHhcch---------h---c---cccccccccchhhhhcccchHHHHHHHHhHHHH--------HHhHHHhhhHHHh
Confidence 0000100 0 0 011123478888888888888888877665432 2345566788899
Q ss_pred HHHHHHHHhCc-------------HHHHHHHHHHHhccCCCCHHHHHHHHh-HHHHHHHHHHHhHHhhCcCHHHHHHHHH
Q 005108 439 VRAQIEMALGR-------------FENAVTAAEKAGQIDPRNVEVAVLLNN-VKLVARARARGNDLFKSERFTEACQAYG 504 (714)
Q Consensus 439 ~la~~~~~~g~-------------~~~A~~~~~~al~~~p~~~~~~~~l~~-l~~~~~~~~~g~~~~~~g~~~~A~~~~~ 504 (714)
++|.+|...|+ .+++...++.+++....+.+....+.. +..-..+-++|+.|+-.|+|++|+..-+
T Consensus 140 NlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~ 219 (639)
T KOG1130|consen 140 NLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHK 219 (639)
T ss_pred hhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHH
Confidence 99999988765 244555555555443333222222211 1111223456889999999999999888
Q ss_pred HhhccCCC------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh----CCC--CHHHHHHHHHHHHHhccHHHHHHHHH
Q 005108 505 EGLRFDPS------NSVLYCNRAACWFKLGQWERSVEDSNQALLI----QPN--YTKALLRRAASNSKLEKWADAVRDFE 572 (714)
Q Consensus 505 ~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~--~~~~~~~la~~~~~~g~~~eA~~~~~ 572 (714)
.-+.+... .-.++.++|.|+.-+|+++.|+++|++.+.+ ... ..+..|.||..|.-+.++++||.|++
T Consensus 220 ~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~ 299 (639)
T KOG1130|consen 220 LRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQ 299 (639)
T ss_pred HHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 77766332 2478899999999999999999999987653 222 34667999999999999999999999
Q ss_pred HHHHhCCCC------HHHHHHHHHHHHHhhh
Q 005108 573 VLRRELPDD------NEIAESLFHAQVSLKK 597 (714)
Q Consensus 573 ~al~~~p~~------~~~~~~L~~~~~~l~~ 597 (714)
+-+.+..+- ..+...|..+...+..
T Consensus 300 rHLaIAqeL~DriGe~RacwSLgna~~alg~ 330 (639)
T KOG1130|consen 300 RHLAIAQELEDRIGELRACWSLGNAFNALGE 330 (639)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHhhhh
Confidence 877664322 2334455555544443
|
|
| >cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.6e-12 Score=112.38 Aligned_cols=92 Identities=20% Similarity=0.268 Sum_probs=78.7
Q ss_pred hHHhhhccC-CCceEEEeecCCCccccccchHHHHHHhhCCC-cEEEEEeccc--CcchhhhCCccccceEEEEeCCe--
Q 005108 619 EQFRAAVSL-PGVSVVHFKSASNLHCKQISPYVETLCGRYPS-INFLKVDIDE--SPGVAHAENVRIVPTFKIYKNGS-- 692 (714)
Q Consensus 619 e~~~~~i~~-~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~-~~~~~vd~d~--~~~l~~~~~v~~~Pt~~~~~~G~-- 692 (714)
+.|...+.. ..+++|.||++||++|+.+.|.++++..++.+ +.|+.+|++. .++++..|+|.++||+++|++|+
T Consensus 8 ~~~~~~i~~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~Pt~~~~~~~~~~ 87 (109)
T cd03002 8 KNFDKVVHNTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNKPLCGKYGVQGFPTLKVFRPPKKA 87 (109)
T ss_pred hhHHHHHhcCCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccccHHHHHHcCCCcCCEEEEEeCCCcc
Confidence 456665544 45699999999999999999999999998865 8899999998 88999999999999999998886
Q ss_pred ---EEEEEcCC-CHHHHHHHHh
Q 005108 693 ---RMKEIVCP-SRDMLEHSVR 710 (714)
Q Consensus 693 ---~~~~~~g~-~~~~l~~~~~ 710 (714)
...++.|. +.+.|.++|.
T Consensus 88 ~~~~~~~~~G~~~~~~l~~fi~ 109 (109)
T cd03002 88 SKHAVEDYNGERSAKAIVDFVL 109 (109)
T ss_pred cccccccccCccCHHHHHHHhC
Confidence 45667788 9999988873
|
MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity. |
| >cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1 | Back alignment and domain information |
|---|
Probab=99.34 E-value=3e-12 Score=109.82 Aligned_cols=95 Identities=20% Similarity=0.272 Sum_probs=79.2
Q ss_pred ehhhhHHhhhccC--CCceEEEeec-------CCCccccccchHHHHHHhhCC-CcEEEEEeccc-------CcchhhhC
Q 005108 615 VSSLEQFRAAVSL--PGVSVVHFKS-------ASNLHCKQISPYVETLCGRYP-SINFLKVDIDE-------SPGVAHAE 677 (714)
Q Consensus 615 i~~~e~~~~~i~~--~~~~vv~f~a-------~~c~~C~~~~p~l~~l~~~~~-~~~~~~vd~d~-------~~~l~~~~ 677 (714)
+.+.+.|.+.+.. +++++|+||| +||++|+.+.|.++++..+++ ++.|++||+++ +.+++..|
T Consensus 6 ~~~~~~f~~~i~~~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~ 85 (119)
T cd02952 6 VRGYEEFLKLLKSHEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDP 85 (119)
T ss_pred ccCHHHHHHHHHhcCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhcc
Confidence 3445566666654 5689999999 999999999999999999998 69999999987 45899999
Q ss_pred Ccc-ccceEEEEeCCeEEEEEcCCCHHHHHHHH
Q 005108 678 NVR-IVPTFKIYKNGSRMKEIVCPSRDMLEHSV 709 (714)
Q Consensus 678 ~v~-~~Pt~~~~~~G~~~~~~~g~~~~~l~~~~ 709 (714)
+|. ++||+++|++|+++..--+.+.+.+..++
T Consensus 86 ~I~~~iPT~~~~~~~~~l~~~~c~~~~~~~~~~ 118 (119)
T cd02952 86 KLTTGVPTLLRWKTPQRLVEDECLQADLVEMFF 118 (119)
T ss_pred CcccCCCEEEEEcCCceecchhhcCHHHHHHhh
Confidence 999 99999999999877766666777776654
|
TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases. |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.6e-11 Score=123.61 Aligned_cols=123 Identities=27% Similarity=0.415 Sum_probs=109.4
Q ss_pred HHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCC---------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Q 005108 479 LVARARARGNDLFKSERFTEACQAYGEGLRFDPSN---------------SVLYCNRAACWFKLGQWERSVEDSNQALLI 543 (714)
Q Consensus 479 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 543 (714)
.+...+..|+.|++.|+|..|...|++++..-... ..++.|++.||.++++|.+|+..++++|++
T Consensus 207 ~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~ 286 (397)
T KOG0543|consen 207 AADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLEL 286 (397)
T ss_pred HHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc
Confidence 34445567999999999999999999998753211 467899999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhccc
Q 005108 544 QPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAESLFHAQVSLKKSRGE 601 (714)
Q Consensus 544 ~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~L~~~~~~l~~~~~~ 601 (714)
+|+|..++|+.|.++..+|+|+.|+..|+++++++|+|..+...|..+...++....+
T Consensus 287 ~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~k 344 (397)
T KOG0543|consen 287 DPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEK 344 (397)
T ss_pred CCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999988887765443
|
|
| >cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain) | Back alignment and domain information |
|---|
Probab=99.32 E-value=5.4e-12 Score=107.93 Aligned_cols=92 Identities=21% Similarity=0.255 Sum_probs=78.9
Q ss_pred hhHHhhhccC-CCceEEEeecCCCccccccchHHHHHHhhCC-CcEEEEEecccCcchhhhCCccccceEEEEeCC-eEE
Q 005108 618 LEQFRAAVSL-PGVSVVHFKSASNLHCKQISPYVETLCGRYP-SINFLKVDIDESPGVAHAENVRIVPTFKIYKNG-SRM 694 (714)
Q Consensus 618 ~e~~~~~i~~-~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~-~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G-~~~ 694 (714)
.+.+...+.. ..++++.||++||++|+.+.|.+.++..+++ .+.|+.+|+++.+++++.|+|+++|++++|++| +..
T Consensus 7 ~~~~~~~i~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~~~P~~~~~~~~~~~~ 86 (103)
T cd03001 7 DSNFDKKVLNSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQSLAQQYGVRGFPTIKVFGAGKNSP 86 (103)
T ss_pred HHhHHHHHhcCCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcchHHHHHHCCCCccCEEEEECCCCcce
Confidence 3556665544 4469999999999999999999999998886 489999999999999999999999999999999 555
Q ss_pred EEEcCC-CHHHHHHHH
Q 005108 695 KEIVCP-SRDMLEHSV 709 (714)
Q Consensus 695 ~~~~g~-~~~~l~~~~ 709 (714)
.++.|. +.++|..|+
T Consensus 87 ~~~~g~~~~~~l~~~~ 102 (103)
T cd03001 87 QDYQGGRTAKAIVSAA 102 (103)
T ss_pred eecCCCCCHHHHHHHh
Confidence 677788 989888875
|
Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain. |
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.30 E-value=5.3e-10 Score=106.89 Aligned_cols=280 Identities=16% Similarity=0.097 Sum_probs=192.1
Q ss_pred hcCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHH
Q 005108 234 RGGICGGDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAH 313 (714)
Q Consensus 234 ~~~~~p~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 313 (714)
.+...|.+-..+..+|.+|+...+|..|..+|++.-...|......+..+..+++.+.+.+|+.....+...+.-.....
T Consensus 36 ~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~l 115 (459)
T KOG4340|consen 36 ELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVL 115 (459)
T ss_pred HHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHH
Confidence 34567778889999999999999999999999999999999999999999999999999999999887755422234556
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 005108 314 QRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRV 393 (714)
Q Consensus 314 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la 393 (714)
..-+.+.+..+++..+....++.-...+.. ...+.+.+.++.|+++.|++-|+.+++..- +.+-+.++++
T Consensus 116 qLqaAIkYse~Dl~g~rsLveQlp~en~Ad---------~~in~gCllykegqyEaAvqkFqaAlqvsG-yqpllAYniA 185 (459)
T KOG4340|consen 116 QLQAAIKYSEGDLPGSRSLVEQLPSENEAD---------GQINLGCLLYKEGQYEAAVQKFQAALQVSG-YQPLLAYNLA 185 (459)
T ss_pred HHHHHHhcccccCcchHHHHHhccCCCccc---------hhccchheeeccccHHHHHHHHHHHHhhcC-CCchhHHHHH
Confidence 666777888888888888877654322222 234456668899999999999999999864 3455666799
Q ss_pred HHHHHcCCHHHHHHHhhccccCCCCCCCch---------h------hhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHH
Q 005108 394 EALLKLHQLEDAESSLSNIPKIEPSTVSSS---------Q------TRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAE 458 (714)
Q Consensus 394 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~---------~------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 458 (714)
.++++.++++.|+++..++++..-.+-+.. . ......-....++...+.++++.++++.|.+.+.
T Consensus 186 LaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLt 265 (459)
T KOG4340|consen 186 LAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALT 265 (459)
T ss_pred HHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhh
Confidence 999999999999998887765433221110 0 1111122335567888899999999999988776
Q ss_pred HHhccCCCC--HHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHH
Q 005108 459 KAGQIDPRN--VEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVED 536 (714)
Q Consensus 459 ~al~~~p~~--~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 536 (714)
.+--....+ +..+..+ +. --..+++.+...-++-.+.++|--.+.+.++-.+|++..-|+-|.+.
T Consensus 266 DmPPRaE~elDPvTLHN~------------Al-~n~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lAADv 332 (459)
T KOG4340|consen 266 DMPPRAEEELDPVTLHNQ------------AL-MNMDARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLAADV 332 (459)
T ss_pred cCCCcccccCCchhhhHH------------HH-hcccCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHHHHH
Confidence 543211111 1111111 11 11223444555555555555665555555555555555555555443
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.30 E-value=4.4e-11 Score=107.77 Aligned_cols=119 Identities=35% Similarity=0.603 Sum_probs=108.2
Q ss_pred HHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCC-----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHH
Q 005108 478 KLVARARARGNDLFKSERFTEACQAYGEGLRFDPSN-----SVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALL 552 (714)
Q Consensus 478 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 552 (714)
..+..++.-|+-++..|+|++|..-|..||.+.|.. ..+|.++|.++++++.|+.|++.+.++++++|.+..++.
T Consensus 93 ~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~ 172 (271)
T KOG4234|consen 93 EKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALE 172 (271)
T ss_pred HHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHH
Confidence 344555667999999999999999999999999875 578899999999999999999999999999999999999
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Q 005108 553 RRAASNSKLEKWADAVRDFEVLRRELPDDNEIAESLFHAQVSLK 596 (714)
Q Consensus 553 ~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~L~~~~~~l~ 596 (714)
++|.+|.++.+|++|++.|+++++++|...++++.+.++-..+.
T Consensus 173 RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i~ 216 (271)
T KOG4234|consen 173 RRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIARLPPKIN 216 (271)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHH
Confidence 99999999999999999999999999999999888877655554
|
|
| >cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.4e-11 Score=102.92 Aligned_cols=90 Identities=34% Similarity=0.610 Sum_probs=81.2
Q ss_pred HhhhccCCCceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCcchhhhCCccccceEEEEeCCeEEEEEcCC
Q 005108 621 FRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKEIVCP 700 (714)
Q Consensus 621 ~~~~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~~~~g~ 700 (714)
+...+....++++.||++||+.|+.+.+.++++..+.+++.|+.+|++...+++..|+|.++|++++|++|+.+..+.|.
T Consensus 3 ~~~~~~~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~~~~~~~g~ 82 (93)
T cd02947 3 FEELIKSAKPVVVDFWAPWCGPCKAIAPVLEELAEEYPKVKFVKVDVDENPELAEEYGVRSIPTFLFFKNGKEVDRVVGA 82 (93)
T ss_pred hHHHHhcCCcEEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEECCCChhHHHhcCcccccEEEEEECCEEEEEEecC
Confidence 44455555789999999999999999999999998878899999999999999999999999999999999999999999
Q ss_pred -CHHHHHHHHh
Q 005108 701 -SRDMLEHSVR 710 (714)
Q Consensus 701 -~~~~l~~~~~ 710 (714)
+.+.|.++|+
T Consensus 83 ~~~~~l~~~i~ 93 (93)
T cd02947 83 DPKEELEEFLE 93 (93)
T ss_pred CCHHHHHHHhC
Confidence 7788888774
|
Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio |
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.4e-10 Score=116.22 Aligned_cols=150 Identities=19% Similarity=0.158 Sum_probs=121.3
Q ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCC
Q 005108 434 AYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSN 513 (714)
Q Consensus 434 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~ 513 (714)
..++|..+..++..|++++|+..++..+...|+|+.++... +.++++.++..+|++.+++++.++|+.
T Consensus 306 ~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~------------~~i~~~~nk~~~A~e~~~kal~l~P~~ 373 (484)
T COG4783 306 LAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELA------------GDILLEANKAKEAIERLKKALALDPNS 373 (484)
T ss_pred hHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHH------------HHHHHHcCChHHHHHHHHHHHhcCCCc
Confidence 45678888888888888888888888888888888777655 888888888888888888888888888
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005108 514 SVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAESLFHAQV 593 (714)
Q Consensus 514 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~L~~~~~ 593 (714)
..++.++|.+|.+.|++.+|+..++..+..+|+++..|..|+..|..+|+..+|...+-+.+.+.-.-..+...+..+..
T Consensus 374 ~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A~~ 453 (484)
T COG4783 374 PLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAIIFLMRASQ 453 (484)
T ss_pred cHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888887777777766666666666555
Q ss_pred Hh
Q 005108 594 SL 595 (714)
Q Consensus 594 ~l 595 (714)
..
T Consensus 454 ~~ 455 (484)
T COG4783 454 QV 455 (484)
T ss_pred hc
Confidence 44
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.1e-10 Score=118.14 Aligned_cols=233 Identities=20% Similarity=0.164 Sum_probs=170.0
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC--CcHHHHHHHHH
Q 005108 241 DAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDP--NYWRAHQRLGS 318 (714)
Q Consensus 241 ~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~a~~~la~ 318 (714)
+.+....+.+.+..+|+++..+...... .+....+...++..+....+.+.++..++..+.... .+.......|.
T Consensus 34 ~~e~~~~~~Rs~iAlg~~~~vl~ei~~~---~~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~ 110 (290)
T PF04733_consen 34 KLERDFYQYRSYIALGQYDSVLSEIKKS---SSPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAAT 110 (290)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHS-TT---SSCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCChhHHHHHhccC---CChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHH
Confidence 4566778899999999998877665442 233345556667666655677788887776654332 34555666677
Q ss_pred HHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 005108 319 LLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLK 398 (714)
Q Consensus 319 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~ 398 (714)
++...|++++|++.+.+. ...+.......+|+.
T Consensus 111 i~~~~~~~~~AL~~l~~~-----------------------------------------------~~lE~~al~Vqi~L~ 143 (290)
T PF04733_consen 111 ILFHEGDYEEALKLLHKG-----------------------------------------------GSLELLALAVQILLK 143 (290)
T ss_dssp HHCCCCHHHHHHCCCTTT-----------------------------------------------TCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHcc-----------------------------------------------CcccHHHHHHHHHHH
Confidence 787888888888766432 122334447788999
Q ss_pred cCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhC--cHHHHHHHHHHHhccCCCCHHHHHHHHh
Q 005108 399 LHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALG--RFENAVTAAEKAGQIDPRNVEVAVLLNN 476 (714)
Q Consensus 399 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~l~~ 476 (714)
+++++.|.+.++.+.+.+.+. ..+....+++.+..| ++.+|...|++..+..+..+..+..+
T Consensus 144 ~~R~dlA~k~l~~~~~~~eD~--------------~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~-- 207 (290)
T PF04733_consen 144 MNRPDLAEKELKNMQQIDEDS--------------ILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGL-- 207 (290)
T ss_dssp TT-HHHHHHHHHHHHCCSCCH--------------HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHH--
T ss_pred cCCHHHHHHHHHHHHhcCCcH--------------HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHH--
Confidence 999999999999998887775 444444555555555 69999999999888777776665544
Q ss_pred HHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCH-HHHHHHHHHHHHhCCCCHH
Q 005108 477 VKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQW-ERSVEDSNQALLIQPNYTK 549 (714)
Q Consensus 477 l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~p~~~~ 549 (714)
+.++..+|+|++|.+.++++++.+|+++.++.+++.+...+|+. +.+.+++.++...+|+++.
T Consensus 208 ----------A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~ 271 (290)
T PF04733_consen 208 ----------AVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPL 271 (290)
T ss_dssp ----------HHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHH
T ss_pred ----------HHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChH
Confidence 99999999999999999999999999999999999999999998 6677888888889999873
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation | Back alignment and domain information |
|---|
Probab=99.26 E-value=1e-11 Score=110.23 Aligned_cols=94 Identities=14% Similarity=0.153 Sum_probs=77.0
Q ss_pred hHHhhhccCC-CceEEEeecCCCccccccchHHH---HHHhhCC-CcEEEEEecccC-------------cchhhhCCcc
Q 005108 619 EQFRAAVSLP-GVSVVHFKSASNLHCKQISPYVE---TLCGRYP-SINFLKVDIDES-------------PGVAHAENVR 680 (714)
Q Consensus 619 e~~~~~i~~~-~~~vv~f~a~~c~~C~~~~p~l~---~l~~~~~-~~~~~~vd~d~~-------------~~l~~~~~v~ 680 (714)
+.+..++... ++++|.||++||++|+.+.|.+. .+...+. ++.++.||+++. .+++.+|+|.
T Consensus 4 ~~~~~a~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v~ 83 (125)
T cd02951 4 EDLAEAAADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYRVR 83 (125)
T ss_pred HHHHHHHHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcCCc
Confidence 3455556666 89999999999999999998774 4544443 578899999874 5789999999
Q ss_pred ccceEEEE-eC-CeEEEEEcCC-CHHHHHHHHhhh
Q 005108 681 IVPTFKIY-KN-GSRMKEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 681 ~~Pt~~~~-~~-G~~~~~~~g~-~~~~l~~~~~~~ 712 (714)
++||+++| ++ |+++.++.|. +.+.++..|+.+
T Consensus 84 ~~Pt~~~~~~~gg~~~~~~~G~~~~~~~~~~l~~~ 118 (125)
T cd02951 84 FTPTVIFLDPEGGKEIARLPGYLPPDEFLAYLEYV 118 (125)
T ss_pred cccEEEEEcCCCCceeEEecCCCCHHHHHHHHHHH
Confidence 99999999 45 7999999999 889999988875
|
Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation. |
| >cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.1e-11 Score=105.42 Aligned_cols=91 Identities=24% Similarity=0.327 Sum_probs=81.3
Q ss_pred hHHhhhccCCCceEEEeecCCCccccccchHHHHHHhhC---CCcEEEEEecccCcchhhhCCccccceEEEEeCC-eEE
Q 005108 619 EQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRY---PSINFLKVDIDESPGVAHAENVRIVPTFKIYKNG-SRM 694 (714)
Q Consensus 619 e~~~~~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~---~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G-~~~ 694 (714)
.+|...+...+.+++.||++||+.|+.+.|.+.++...+ ..+.|+.+|+++...+++.|+|+.+||+++|++| +.+
T Consensus 6 ~~~~~~i~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~~~~~~ 85 (101)
T cd02961 6 DNFDELVKDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGVRGYPTIKLFPNGSKEP 85 (101)
T ss_pred HHHHHHHhCCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHHHHHhCCCCCCCEEEEEcCCCccc
Confidence 467777777779999999999999999999999999888 4699999999999999999999999999999777 888
Q ss_pred EEEcCC-CHHHHHHHH
Q 005108 695 KEIVCP-SRDMLEHSV 709 (714)
Q Consensus 695 ~~~~g~-~~~~l~~~~ 709 (714)
.++.|. +.+.|.++|
T Consensus 86 ~~~~g~~~~~~i~~~~ 101 (101)
T cd02961 86 VKYEGPRTLESLVEFI 101 (101)
T ss_pred ccCCCCcCHHHHHhhC
Confidence 889888 888887764
|
Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies |
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=7.2e-09 Score=124.56 Aligned_cols=288 Identities=13% Similarity=-0.017 Sum_probs=199.1
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC---------cHHHHHHHHHHHHHcCCHHHHHHHHHhhcCCCChHHHH
Q 005108 276 AAFRSNRAAALTGLGRIGEAVKECEEAVRLDPN---------YWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVH 346 (714)
Q Consensus 276 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---------~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 346 (714)
+.....++.++...|++++|...+..+....+. .......++.++...|++++|..++++++........
T Consensus 409 ~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~- 487 (903)
T PRK04841 409 PRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWY- 487 (903)
T ss_pred cchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccH-
Confidence 445566788888999999999999988654221 2345566788899999999999999998763222111
Q ss_pred HHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCC-----CHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCC
Q 005108 347 RLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADF-----SPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVS 421 (714)
Q Consensus 347 ~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 421 (714)
.........++..+...|++++|...+++++...... ....+..++.++...|++++|...+++++........
T Consensus 488 -~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~ 566 (903)
T PRK04841 488 -YSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHL 566 (903)
T ss_pred -HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcc
Confidence 1122334567777889999999999999998763321 1234456899999999999999999998875322100
Q ss_pred chhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHH
Q 005108 422 SSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQ 501 (714)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~ 501 (714)
.........+..++.++...|++++|...+++++........... ...+..++.++...|++++|..
T Consensus 567 ------~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~-------~~~~~~la~~~~~~G~~~~A~~ 633 (903)
T PRK04841 567 ------EQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQ-------LQCLAMLAKISLARGDLDNARR 633 (903)
T ss_pred ------ccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHH-------HHHHHHHHHHHHHcCCHHHHHH
Confidence 000012344667899999999999999999999875432111000 0112235889999999999999
Q ss_pred HHHHhhccCCCC---HHHHH----HHHHHHHHhCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHhccHHHHHHH
Q 005108 502 AYGEGLRFDPSN---SVLYC----NRAACWFKLGQWERSVEDSNQALLIQPNYT----KALLRRAASNSKLEKWADAVRD 570 (714)
Q Consensus 502 ~~~~al~~~p~~---~~~~~----~la~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~eA~~~ 570 (714)
.+++++.+.... ..... .....+...|+.++|..++.......+... ..+..++.++...|++++|...
T Consensus 634 ~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~ 713 (903)
T PRK04841 634 YLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEII 713 (903)
T ss_pred HHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999987653221 11111 123455668999999999877655332222 2256789999999999999999
Q ss_pred HHHHHHhC
Q 005108 571 FEVLRREL 578 (714)
Q Consensus 571 ~~~al~~~ 578 (714)
+++++...
T Consensus 714 l~~al~~~ 721 (903)
T PRK04841 714 LEELNENA 721 (903)
T ss_pred HHHHHHHH
Confidence 99998863
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.25 E-value=5.1e-10 Score=114.91 Aligned_cols=157 Identities=17% Similarity=0.153 Sum_probs=140.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccC
Q 005108 385 SPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQID 464 (714)
Q Consensus 385 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 464 (714)
....++-.+..++..|++++|+..++.+++..|+| .+.+-..+.+++..++.++|.+.+++++.++
T Consensus 305 ~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N--------------~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~ 370 (484)
T COG4783 305 GLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDN--------------PYYLELAGDILLEANKAKEAIERLKKALALD 370 (484)
T ss_pred chHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCC--------------HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Confidence 34556668999999999999999999999999999 8889999999999999999999999999999
Q ss_pred CCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Q 005108 465 PRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQ 544 (714)
Q Consensus 465 p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 544 (714)
|+....+..+ |+.|++.|++++|+..++..+..+|+++..|..||..|..+|+..+|..
T Consensus 371 P~~~~l~~~~------------a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~--------- 429 (484)
T COG4783 371 PNSPLLQLNL------------AQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALL--------- 429 (484)
T ss_pred CCccHHHHHH------------HHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHH---------
Confidence 9998887766 9999999999999999999999999999999999999999998766654
Q ss_pred CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHH
Q 005108 545 PNYTKALLRRAASNSKLEKWADAVRDFEVLRREL-PDDNEI 584 (714)
Q Consensus 545 p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~ 584 (714)
..+..|...|+|++|+..+..+.+.. .+.+..
T Consensus 430 --------A~AE~~~~~G~~~~A~~~l~~A~~~~~~~~~~~ 462 (484)
T COG4783 430 --------ARAEGYALAGRLEQAIIFLMRASQQVKLGFPDW 462 (484)
T ss_pred --------HHHHHHHhCCCHHHHHHHHHHHHHhccCCcHHH
Confidence 45667778899999999999999877 444443
|
|
| >cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5 | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.7e-11 Score=105.14 Aligned_cols=91 Identities=25% Similarity=0.326 Sum_probs=77.8
Q ss_pred hHHhhhccCCC-ceEEEeecCCCccccccchHHHHHHhhCC---CcEEEEEeccc-CcchhhhCCccccceEEEEeCC-e
Q 005108 619 EQFRAAVSLPG-VSVVHFKSASNLHCKQISPYVETLCGRYP---SINFLKVDIDE-SPGVAHAENVRIVPTFKIYKNG-S 692 (714)
Q Consensus 619 e~~~~~i~~~~-~~vv~f~a~~c~~C~~~~p~l~~l~~~~~---~~~~~~vd~d~-~~~l~~~~~v~~~Pt~~~~~~G-~ 692 (714)
++++..+...+ .+++.||++||++|+.+.|.+.++..++. .+.++.+|++. .+.+++.|+|.++|++++|++| +
T Consensus 8 ~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i~~~P~~~~~~~~~~ 87 (105)
T cd02998 8 SNFDKVVGDDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVSGFPTLKFFPKGST 87 (105)
T ss_pred hcHHHHhcCCCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCCCCcCEEEEEeCCCC
Confidence 45566665544 89999999999999999999999998875 48899999999 9999999999999999999777 5
Q ss_pred EEEEEcCC-CHHHHHHHH
Q 005108 693 RMKEIVCP-SRDMLEHSV 709 (714)
Q Consensus 693 ~~~~~~g~-~~~~l~~~~ 709 (714)
....+.|. +.++|.++|
T Consensus 88 ~~~~~~g~~~~~~l~~~i 105 (105)
T cd02998 88 EPVKYEGGRDLEDLVKFV 105 (105)
T ss_pred CccccCCccCHHHHHhhC
Confidence 66677787 888888764
|
The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.4e-09 Score=110.99 Aligned_cols=140 Identities=16% Similarity=0.200 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHHHh-CcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCC
Q 005108 434 AYTFFVRAQIEMAL-GRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPS 512 (714)
Q Consensus 434 ~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~ 512 (714)
+..+..+|.+|... |++++|+++|++|+++.......... ...+...|.++.+.|+|++|++.|++.....-+
T Consensus 114 A~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a------~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~ 187 (282)
T PF14938_consen 114 AKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSA------AECLLKAADLYARLGRYEEAIEIYEEVAKKCLE 187 (282)
T ss_dssp HHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHH------HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhH------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhc
Confidence 45667778888888 89999999999998764322211111 122335599999999999999999998875322
Q ss_pred C-------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHH--hccHHHHHHHHHHHHHhC
Q 005108 513 N-------SVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYT-----KALLRRAASNSK--LEKWADAVRDFEVLRREL 578 (714)
Q Consensus 513 ~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~--~g~~~eA~~~~~~al~~~ 578 (714)
+ ...++..+.|++..|++..|.+.+++....+|... .....+-.++.. ...+++|+..|+..-+++
T Consensus 188 ~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ld 267 (282)
T PF14938_consen 188 NNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISRLD 267 (282)
T ss_dssp HCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS---
T ss_pred ccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCccH
Confidence 1 24567788899999999999999999999988653 445555555543 457888999888777665
Q ss_pred C
Q 005108 579 P 579 (714)
Q Consensus 579 p 579 (714)
+
T Consensus 268 ~ 268 (282)
T PF14938_consen 268 N 268 (282)
T ss_dssp H
T ss_pred H
Confidence 3
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.7e-07 Score=98.88 Aligned_cols=330 Identities=14% Similarity=0.066 Sum_probs=236.4
Q ss_pred CCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCC-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-
Q 005108 236 GICGGDAEELKRMGNELYRKGCFGEALSMYDKAIS-LAPRN-----AAFRSNRAAALTGLGRIGEAVKECEEAVRLDPN- 308 (714)
Q Consensus 236 ~~~p~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~-~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~- 308 (714)
+-+|++++.|..... +..|+..+-+..|.+|++ .+|.. ...|..+|..|...|+.+.|...|+++.+..-.
T Consensus 343 RQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~ 420 (835)
T KOG2047|consen 343 RQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKT 420 (835)
T ss_pred hcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccc
Confidence 347888888887755 457889999999999986 46654 568999999999999999999999999987533
Q ss_pred ---cHHHHHHHHHHHHHcCCHHHHHHHHHhhcCCCChHH-----------HHHHHHHHHHHHHhHHHHHcCCHHHHHHHH
Q 005108 309 ---YWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTE-----------VHRLQVVEKHLSKCTDARKVGDWKSALREG 374 (714)
Q Consensus 309 ---~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-----------~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~ 374 (714)
-...|...|..-.+..+++.|+.+.+.+...+.... ......+..|...++.....|-++.....|
T Consensus 421 v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vY 500 (835)
T KOG2047|consen 421 VEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVY 500 (835)
T ss_pred hHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHH
Confidence 267899999999999999999999999876333211 122344555666777778889999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHH
Q 005108 375 DAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAV 454 (714)
Q Consensus 375 ~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 454 (714)
++++.+.-- .+++..+.|..+....-++++.+.|++.+.+.+-... ......|......-+.--+.+.|.
T Consensus 501 driidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v---------~diW~tYLtkfi~rygg~klEraR 570 (835)
T KOG2047|consen 501 DRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNV---------YDIWNTYLTKFIKRYGGTKLERAR 570 (835)
T ss_pred HHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccH---------HHHHHHHHHHHHHHhcCCCHHHHH
Confidence 999988654 5777888999999999999999999999998876411 001122333333334445799999
Q ss_pred HHHHHHhccCCCC-HHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHH-----hC
Q 005108 455 TAAEKAGQIDPRN-VEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFK-----LG 528 (714)
Q Consensus 455 ~~~~~al~~~p~~-~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-----~g 528 (714)
.+|++|++.-|.. ....+++ .+..-.+-|.-..|+..|++|-..-+.. -.+.+=.+|.+ .|
T Consensus 571 dLFEqaL~~Cpp~~aKtiyLl-----------YA~lEEe~GLar~amsiyerat~~v~~a--~~l~myni~I~kaae~yG 637 (835)
T KOG2047|consen 571 DLFEQALDGCPPEHAKTIYLL-----------YAKLEEEHGLARHAMSIYERATSAVKEA--QRLDMYNIYIKKAAEIYG 637 (835)
T ss_pred HHHHHHHhcCCHHHHHHHHHH-----------HHHHHHHhhHHHHHHHHHHHHHhcCCHH--HHHHHHHHHHHHHHHHhC
Confidence 9999999987732 2222221 2555666688889999999976643321 11112222221 12
Q ss_pred CHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHhccHHHHHHHHHHHHHhCC--CCHHHHHHHHHH
Q 005108 529 QWERSVEDSNQALLIQPNYT--KALLRRAASNSKLEKWADAVRDFEVLRRELP--DDNEIAESLFHA 591 (714)
Q Consensus 529 ~~~~A~~~~~~al~~~p~~~--~~~~~la~~~~~~g~~~eA~~~~~~al~~~p--~~~~~~~~L~~~ 591 (714)
...-...|++|++.-|+.. ......+..-.++|..+.|...|.-+-++.+ .+.+.++.....
T Consensus 638 -v~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~F 703 (835)
T KOG2047|consen 638 -VPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEF 703 (835)
T ss_pred -CcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHH
Confidence 3345678888988877754 4556778888999999999999988877643 234555544433
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.2e-10 Score=120.38 Aligned_cols=114 Identities=19% Similarity=0.237 Sum_probs=107.3
Q ss_pred HHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHH
Q 005108 437 FFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVL 516 (714)
Q Consensus 437 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 516 (714)
+...|..++..|+|++|+.+|+++++++|++..++..+ |.+|...|++++|+..++++++++|+++.+
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~------------a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a 72 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADR------------AQANIKLGNFTEAVADANKAIELDPSLAKA 72 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHhCcCCHHH
Confidence 56678999999999999999999999999999988765 999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Q 005108 517 YCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLE 562 (714)
Q Consensus 517 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 562 (714)
|+.+|.+|..+|+|++|+..|+++++++|++..+...++.+..++.
T Consensus 73 ~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~ 118 (356)
T PLN03088 73 YLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKIA 118 (356)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999888876663
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.19 E-value=6.1e-08 Score=102.12 Aligned_cols=317 Identities=15% Similarity=0.117 Sum_probs=220.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CCHH-----HHHHHHHHHHHCC-------------CHHHHHHHHH
Q 005108 242 AEELKRMGNELYRKGCFGEALSMYDKAISLAP---RNAA-----FRSNRAAALTGLG-------------RIGEAVKECE 300 (714)
Q Consensus 242 ~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p---~~~~-----~~~~la~~~~~~g-------------~~~~A~~~~~ 300 (714)
...|..+|+.|...|.|++|...|++++..-- +... +.+.--.+-..++ +++-....|+
T Consensus 248 g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e 327 (835)
T KOG2047|consen 248 GFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFE 327 (835)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHH
Confidence 46788999999999999999999999987532 1111 1111111112222 2233344444
Q ss_pred HH------------HhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCCCChHHHH-HHHHHHHHHHHhHHHHHcCCH
Q 005108 301 EA------------VRLDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVH-RLQVVEKHLSKCTDARKVGDW 367 (714)
Q Consensus 301 ~a------------l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~l~~~~~~~~~a~~~~~~g~~ 367 (714)
.. +..+|++..-|.....+ ..|+..+-+..|..+++..+|.... .+. ..+...+..|...|+.
T Consensus 328 ~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~vdP~ka~Gs~~--~Lw~~faklYe~~~~l 403 (835)
T KOG2047|consen 328 SLMNRRPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKTVDPKKAVGSPG--TLWVEFAKLYENNGDL 403 (835)
T ss_pred HHHhccchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHccCcccCCCChh--hHHHHHHHHHHhcCcH
Confidence 44 34577788777776655 4688999999999998855554321 111 3466778889999999
Q ss_pred HHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCC-------CCchhhhhhhhhhhHHHH
Q 005108 368 KSALREGDAAIAAGADFS---PQLSMCRVEALLKLHQLEDAESSLSNIPKIEPST-------VSSSQTRFFGMLSEAYTF 437 (714)
Q Consensus 368 ~~Al~~~~~al~~~p~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~~~~~~~~~~~~~ 437 (714)
+.|...|+++.+..-... ..+|..-|..-++..+++.|+++++++...-... ....+.++... ..+|
T Consensus 404 ~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrS---lkiW 480 (835)
T KOG2047|consen 404 DDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRS---LKIW 480 (835)
T ss_pred HHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHh---HHHH
Confidence 999999999999865433 6778888999999999999999999987653331 11223333322 4567
Q ss_pred HHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccC--CCCHH
Q 005108 438 FVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFD--PSNSV 515 (714)
Q Consensus 438 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~ 515 (714)
...+......|-++.....|++.+++.--.+.....+ |..+....-+++|.+.|++.+.+. |.-.+
T Consensus 481 s~y~DleEs~gtfestk~vYdriidLriaTPqii~Ny------------AmfLEeh~yfeesFk~YErgI~LFk~p~v~d 548 (835)
T KOG2047|consen 481 SMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINY------------AMFLEEHKYFEESFKAYERGISLFKWPNVYD 548 (835)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHH------------HHHHHhhHHHHHHHHHHHcCCccCCCccHHH
Confidence 7888888889999999999999998877777776655 777888888899999999998875 34455
Q ss_pred HHHHHHHHHH---HhCCHHHHHHHHHHHHHhCCCC-H-HHHHHHHHHHHHhccHHHHHHHHHHHHHh
Q 005108 516 LYCNRAACWF---KLGQWERSVEDSNQALLIQPNY-T-KALLRRAASNSKLEKWADAVRDFEVLRRE 577 (714)
Q Consensus 516 ~~~~la~~~~---~~g~~~~A~~~~~~al~~~p~~-~-~~~~~la~~~~~~g~~~eA~~~~~~al~~ 577 (714)
+|...-..+. .--..+.|...|++|++..|.. . ..|+..+..-.+-|.-..|+..|++|-..
T Consensus 549 iW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~ 615 (835)
T KOG2047|consen 549 IWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA 615 (835)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 5554433332 2346888999999999977632 2 33445566666667777777777776543
|
|
| >cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1 | Back alignment and domain information |
|---|
Probab=99.19 E-value=4.7e-11 Score=102.28 Aligned_cols=90 Identities=20% Similarity=0.236 Sum_probs=76.5
Q ss_pred hHHhhhccC-CCceEEEeecCCCccccccchHHHHHHhhCCC---cEEEEEecccCcchhhhCCccccceEEEEeCCe--
Q 005108 619 EQFRAAVSL-PGVSVVHFKSASNLHCKQISPYVETLCGRYPS---INFLKVDIDESPGVAHAENVRIVPTFKIYKNGS-- 692 (714)
Q Consensus 619 e~~~~~i~~-~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~---~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~-- 692 (714)
..|...+.. ...++|.||++||++|+.+.|.++++...+.+ +.|+++|+++. +++..++|.++||+++|++|+
T Consensus 8 ~~f~~~i~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-~~~~~~~~~~~Pt~~~~~~~~~~ 86 (104)
T cd02995 8 KNFDEVVLDSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN-DVPSEFVVDGFPTILFFPAGDKS 86 (104)
T ss_pred hhhHHHHhCCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch-hhhhhccCCCCCEEEEEcCCCcC
Confidence 456665544 46899999999999999999999999988754 88999999886 688899999999999999998
Q ss_pred EEEEEcCC-CHHHHHHHH
Q 005108 693 RMKEIVCP-SRDMLEHSV 709 (714)
Q Consensus 693 ~~~~~~g~-~~~~l~~~~ 709 (714)
...++.|. +.+.|.++|
T Consensus 87 ~~~~~~g~~~~~~l~~fi 104 (104)
T cd02995 87 NPIKYEGDRTLEDLIKFI 104 (104)
T ss_pred CceEccCCcCHHHHHhhC
Confidence 56678888 888887764
|
PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu |
| >TIGR00411 redox_disulf_1 small redox-active disulfide protein 1 | Back alignment and domain information |
|---|
Probab=99.19 E-value=7.8e-11 Score=95.92 Aligned_cols=78 Identities=19% Similarity=0.329 Sum_probs=69.7
Q ss_pred eEEEeecCCCccccccchHHHHHHhhCC-CcEEEEEecccCcchhhhCCccccceEEEEeCCeEEEEEcCC-CHHHHHHH
Q 005108 631 SVVHFKSASNLHCKQISPYVETLCGRYP-SINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKEIVCP-SRDMLEHS 708 (714)
Q Consensus 631 ~vv~f~a~~c~~C~~~~p~l~~l~~~~~-~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~~~~g~-~~~~l~~~ 708 (714)
.+..||++||++|+.+.|.++++..++. .+.+++||+++.++++++|+|+++||+++ +|+ .++.|. +.++|+++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~vPt~~~--~g~--~~~~G~~~~~~l~~~ 77 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQKAMEYGIMAVPAIVI--NGD--VEFIGAPTKEELVEA 77 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCHHHHHHcCCccCCEEEE--CCE--EEEecCCCHHHHHHH
Confidence 4678999999999999999999998885 48899999999999999999999999986 887 377888 99999999
Q ss_pred Hhhh
Q 005108 709 VRHY 712 (714)
Q Consensus 709 ~~~~ 712 (714)
|++.
T Consensus 78 l~~~ 81 (82)
T TIGR00411 78 IKKR 81 (82)
T ss_pred HHhh
Confidence 8764
|
This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin. |
| >PHA02125 thioredoxin-like protein | Back alignment and domain information |
|---|
Probab=99.18 E-value=4.9e-11 Score=94.71 Aligned_cols=70 Identities=20% Similarity=0.377 Sum_probs=61.2
Q ss_pred EEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCcchhhhCCccccceEEEEeCCeEEEEEcCC--CHHHHHHHH
Q 005108 632 VVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKEIVCP--SRDMLEHSV 709 (714)
Q Consensus 632 vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~~~~g~--~~~~l~~~~ 709 (714)
++.|+++||++|+.+.|.++++. +.+++||.++.++++..|+|+++||++ +|+.+.++.|+ +..+|++.|
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~-----~~~~~vd~~~~~~l~~~~~v~~~PT~~---~g~~~~~~~G~~~~~~~l~~~~ 73 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE-----YTYVDVDTDEGVELTAKHHIRSLPTLV---NTSTLDRFTGVPRNVAELKEKL 73 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh-----heEEeeeCCCCHHHHHHcCCceeCeEE---CCEEEEEEeCCCCcHHHHHHHh
Confidence 68999999999999999997653 468999999999999999999999987 89999999998 556676654
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=99.15 E-value=7.7e-10 Score=97.15 Aligned_cols=105 Identities=14% Similarity=0.160 Sum_probs=96.4
Q ss_pred HHHHhHHhhCcCHHHHHHHHHHhhccCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHH
Q 005108 484 RARGNDLFKSERFTEACQAYGEGLRFDPSN---SVLYCNRAACWFKLGQWERSVEDSNQALLIQPNY---TKALLRRAAS 557 (714)
Q Consensus 484 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~ 557 (714)
...|..+...|++++|++.|+++++.+|++ ..+++.+|.++.+.|++++|+..|++++..+|++ ..+++.+|.+
T Consensus 6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~ 85 (119)
T TIGR02795 6 YDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMS 85 (119)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHH
Confidence 355999999999999999999999998876 5789999999999999999999999999998885 6789999999
Q ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005108 558 NSKLEKWADAVRDFEVLRRELPDDNEIAESL 588 (714)
Q Consensus 558 ~~~~g~~~eA~~~~~~al~~~p~~~~~~~~L 588 (714)
+.++|++++|+.+|+++++..|++..+...+
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~ 116 (119)
T TIGR02795 86 LQELGDKEKAKATLQQVIKRYPGSSAAKLAQ 116 (119)
T ss_pred HHHhCChHHHHHHHHHHHHHCcCChhHHHHH
Confidence 9999999999999999999999998876654
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.6e-08 Score=94.50 Aligned_cols=264 Identities=16% Similarity=0.136 Sum_probs=180.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHH
Q 005108 250 NELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVRLGQVENA 329 (714)
Q Consensus 250 ~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A 329 (714)
+.++-.|+|..++..-++.-... ........+...|..+|++..-+......- .....+...++.....-++.++-
T Consensus 16 Rn~fY~Gnyq~~ine~~~~~~~~-~~~e~d~y~~raylAlg~~~~~~~eI~~~~---~~~lqAvr~~a~~~~~e~~~~~~ 91 (299)
T KOG3081|consen 16 RNYFYLGNYQQCINEAEKFSSSK-TDVELDVYMYRAYLALGQYQIVISEIKEGK---ATPLQAVRLLAEYLELESNKKSI 91 (299)
T ss_pred HHHHHhhHHHHHHHHHHhhcccc-chhHHHHHHHHHHHHccccccccccccccc---CChHHHHHHHHHHhhCcchhHHH
Confidence 44566788888887777665443 567777788888888888876555444322 11233333444433333333222
Q ss_pred HHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHh
Q 005108 330 RRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSL 409 (714)
Q Consensus 330 ~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~ 409 (714)
+..+ ++..+.........+...-+.+|+..+++++|++..
T Consensus 92 ~~~l----------------------------------------~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~ 131 (299)
T KOG3081|consen 92 LASL----------------------------------------YELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKAL 131 (299)
T ss_pred HHHH----------------------------------------HHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHH
Confidence 2221 111222222223344455678899999999999988
Q ss_pred hccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhH
Q 005108 410 SNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGND 489 (714)
Q Consensus 410 ~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~ 489 (714)
..... ..+...--+++.++.+++-|...++++.+++.+..-. .+. ..| ...
T Consensus 132 ~~~~~-------------------lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tLt--QLA-----~aw---v~l 182 (299)
T KOG3081|consen 132 HLGEN-------------------LEAAALNVQILLKMHRFDLAEKELKKMQQIDEDATLT--QLA-----QAW---VKL 182 (299)
T ss_pred hccch-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHH--HHH-----HHH---HHH
Confidence 77322 3345555678889999999999999999887765322 120 000 111
Q ss_pred HhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHH-
Q 005108 490 LFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAV- 568 (714)
Q Consensus 490 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~- 568 (714)
....+++.+|.-+|++.-+..+..+.++..++.|.+.+|+|++|...++.++..++++++++.++..+-..+|+..++.
T Consensus 183 a~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~ 262 (299)
T KOG3081|consen 183 ATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTE 262 (299)
T ss_pred hccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHH
Confidence 2334578999999999999888899999999999999999999999999999999999999999999999999887765
Q ss_pred HHHHHHHHhCCCCHHHHH
Q 005108 569 RDFEVLRRELPDDNEIAE 586 (714)
Q Consensus 569 ~~~~~al~~~p~~~~~~~ 586 (714)
++..+....+|+++-+..
T Consensus 263 r~l~QLk~~~p~h~~vk~ 280 (299)
T KOG3081|consen 263 RNLSQLKLSHPEHPFVKH 280 (299)
T ss_pred HHHHHHHhcCCcchHHHH
Confidence 456677778888776543
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.7e-10 Score=110.79 Aligned_cols=111 Identities=28% Similarity=0.425 Sum_probs=105.3
Q ss_pred HHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Q 005108 483 ARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLE 562 (714)
Q Consensus 483 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 562 (714)
++.+|+.|+++|+|++|+.+|.+++..+|.++..+.++|.+|++++.|..|...|+.|+.++..+..+|-+++.+-..+|
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 45779999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005108 563 KWADAVRDFEVLRRELPDDNEIAESLFHAQV 593 (714)
Q Consensus 563 ~~~eA~~~~~~al~~~p~~~~~~~~L~~~~~ 593 (714)
+..+|.+.++.+|++.|++.+....+..+..
T Consensus 180 ~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~S 210 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKNIELKKSLARINS 210 (536)
T ss_pred hHHHHHHhHHHHHhhCcccHHHHHHHHHhcc
Confidence 9999999999999999999988877766544
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=99.13 E-value=9.1e-09 Score=101.16 Aligned_cols=322 Identities=13% Similarity=0.053 Sum_probs=226.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc----CCC--cHHH
Q 005108 242 AEELKRMGNELYRKGCFGEALSMYDKAISLAPRN---AAFRSNRAAALTGLGRIGEAVKECEEAVRL----DPN--YWRA 312 (714)
Q Consensus 242 ~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~--~~~a 312 (714)
+......|..++...++++|+..+.+.+..-.+. ...+-.+..+...+|.|++++...-..+.. +.. ..++
T Consensus 6 ~k~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea 85 (518)
T KOG1941|consen 6 TKKQIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEA 85 (518)
T ss_pred hHHHHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556778999999999999999999998754332 345556778888999999887765444332 221 2578
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCC-----CCCHH
Q 005108 313 HQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGA-----DFSPQ 387 (714)
Q Consensus 313 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p-----~~~~~ 387 (714)
+.+++..+.+..++.+++.+-...+..+.......- ...++..+..+..++.++++++.|+++++... -..-+
T Consensus 86 ~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~--gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElq 163 (518)
T KOG1941|consen 86 YLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLG--GQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQ 163 (518)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCccccc--chhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeee
Confidence 999999999999999999887766552211110000 12344466678888999999999999998743 23346
Q ss_pred HHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCC--
Q 005108 388 LSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDP-- 465 (714)
Q Consensus 388 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-- 465 (714)
++..++..|.++.++++|+-+..++.++-.... .+-...-....+++.++..+..+|+.-.|.++.+++.++.-
T Consensus 164 vcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~----l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~ 239 (518)
T KOG1941|consen 164 VCVSLGSLFAQLKDYEKALFFPCKAAELVNSYG----LKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQH 239 (518)
T ss_pred hhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcC----cCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHh
Confidence 677799999999999999999998877643321 00011112355788899999999999999999999876532
Q ss_pred CCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCC------CHHHHHHHHHHHHHhCCHHH-----HH
Q 005108 466 RNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPS------NSVLYCNRAACWFKLGQWER-----SV 534 (714)
Q Consensus 466 ~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~-----A~ 534 (714)
.+...+ ...+..+|++|...|+.+.|..-|+.|+..-.. ..+++...|.|+....-..+ |+
T Consensus 240 Gdra~~--------arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~~r~~~k~~~Cral 311 (518)
T KOG1941|consen 240 GDRALQ--------ARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLETLRLQNKICNCRAL 311 (518)
T ss_pred CChHHH--------HHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcccccchh
Confidence 111111 112235699999999999999999998875221 24566667777766554444 88
Q ss_pred HHHHHHHHhCCC------CHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Q 005108 535 EDSNQALLIQPN------YTKALLRRAASNSKLEKWADAVRDFEVLRRE 577 (714)
Q Consensus 535 ~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 577 (714)
+.-++++++... ..+.+..++.+|..+|.-++-...+.++-+.
T Consensus 312 e~n~r~levA~~IG~K~~vlK~hcrla~iYrs~gl~d~~~~h~~ra~~~ 360 (518)
T KOG1941|consen 312 EFNTRLLEVASSIGAKLSVLKLHCRLASIYRSKGLQDELRAHVVRAHEC 360 (518)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHH
Confidence 888888876432 1367788999998888888777777665544
|
|
| >cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.3e-10 Score=100.12 Aligned_cols=91 Identities=14% Similarity=0.179 Sum_probs=73.5
Q ss_pred hHHhhhc---cCCCceEEEeecCCCccccccchHHHHHHhhCC--CcEEEEEeccc-Ccchhh-hCCccccceEEEEeCC
Q 005108 619 EQFRAAV---SLPGVSVVHFKSASNLHCKQISPYVETLCGRYP--SINFLKVDIDE-SPGVAH-AENVRIVPTFKIYKNG 691 (714)
Q Consensus 619 e~~~~~i---~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~--~~~~~~vd~d~-~~~l~~-~~~v~~~Pt~~~~~~G 691 (714)
+.|+..+ ..+.++++.||++||++|+++.|.+.++...+. ++.++.||++. ...++. .|+|+.+||+++|++|
T Consensus 9 ~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~v~~~Pti~~f~~~ 88 (109)
T cd02993 9 AEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQLKSFPTILFFPKN 88 (109)
T ss_pred HHHHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhhHHhhcCCCcCCEEEEEcCC
Confidence 3555544 346799999999999999999999999998885 48899999997 567776 5999999999999665
Q ss_pred -eEEEEEcCC--CHHHHHHHH
Q 005108 692 -SRMKEIVCP--SRDMLEHSV 709 (714)
Q Consensus 692 -~~~~~~~g~--~~~~l~~~~ 709 (714)
.....+.|. +.+.|..+|
T Consensus 89 ~~~~~~y~g~~~~~~~l~~f~ 109 (109)
T cd02993 89 SRQPIKYPSEQRDVDSLLMFV 109 (109)
T ss_pred CCCceeccCCCCCHHHHHhhC
Confidence 456677773 888887664
|
APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red |
| >TIGR02187 GlrX_arch Glutaredoxin-like domain protein | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.6e-10 Score=112.67 Aligned_cols=85 Identities=20% Similarity=0.225 Sum_probs=73.9
Q ss_pred CCceEEEeec---CCCccccccchHHHHHHhhCCCcE--EEEEecccCcchhhhCCccccceEEEEeCCeEEE-EEcCC-
Q 005108 628 PGVSVVHFKS---ASNLHCKQISPYVETLCGRYPSIN--FLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMK-EIVCP- 700 (714)
Q Consensus 628 ~~~~vv~f~a---~~c~~C~~~~p~l~~l~~~~~~~~--~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~-~~~g~- 700 (714)
.++.++.|.+ +||++|+.+.|.++++..+++.+. ++.+|.++.+++++.|+|+++||+++|++|+.+. ++.|.
T Consensus 19 ~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~~~l~~~~~V~~~Pt~~~f~~g~~~~~~~~G~~ 98 (215)
T TIGR02187 19 NPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPEDKEEAEKYGVERVPTTIILEEGKDGGIRYTGIP 98 (215)
T ss_pred CCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcccHHHHHHcCCCccCEEEEEeCCeeeEEEEeecC
Confidence 4466767877 999999999999999999998655 5666666999999999999999999999999985 89999
Q ss_pred CHHHHHHHHhhh
Q 005108 701 SRDMLEHSVRHY 712 (714)
Q Consensus 701 ~~~~l~~~~~~~ 712 (714)
+.+++.++|+.+
T Consensus 99 ~~~~l~~~i~~~ 110 (215)
T TIGR02187 99 AGYEFAALIEDI 110 (215)
T ss_pred CHHHHHHHHHHH
Confidence 888998888765
|
This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different. |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.5e-09 Score=104.41 Aligned_cols=131 Identities=22% Similarity=0.238 Sum_probs=118.3
Q ss_pred cHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhC
Q 005108 449 RFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLG 528 (714)
Q Consensus 449 ~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 528 (714)
..++-+.-++.-+..+|++.+-|..+ |.+|...|++..|...|.+++++.|++++++..+|.+++...
T Consensus 137 ~~~~l~a~Le~~L~~nP~d~egW~~L------------g~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a 204 (287)
T COG4235 137 EMEALIARLETHLQQNPGDAEGWDLL------------GRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQA 204 (287)
T ss_pred cHHHHHHHHHHHHHhCCCCchhHHHH------------HHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Confidence 35666777888899999999999988 999999999999999999999999999999999999887754
Q ss_pred ---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005108 529 ---QWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAESLFHA 591 (714)
Q Consensus 529 ---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~L~~~ 591 (714)
...++...++++++++|+++.+++.||..++..|+|.+|+..++..++..|.+..-...+.+.
T Consensus 205 ~~~~ta~a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~~ 270 (287)
T COG4235 205 GQQMTAKARALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIERS 270 (287)
T ss_pred CCcccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHHHH
Confidence 477999999999999999999999999999999999999999999999998876655555443
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=99.10 E-value=4.2e-10 Score=88.10 Aligned_cols=67 Identities=25% Similarity=0.432 Sum_probs=61.3
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHhCC
Q 005108 513 NSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLE-KWADAVRDFEVLRRELP 579 (714)
Q Consensus 513 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~eA~~~~~~al~~~p 579 (714)
++..|..+|.++...|++++|+.+|+++++++|+++.+++++|.+|..+| ++++|+++|+++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 57888999999999999999999999999999999999999999999998 79999999999999887
|
... |
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.10 E-value=4.6e-11 Score=116.08 Aligned_cols=227 Identities=13% Similarity=0.067 Sum_probs=188.8
Q ss_pred HHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhh
Q 005108 352 EKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGML 431 (714)
Q Consensus 352 ~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 431 (714)
...-.++..|+++|.|++|+.+|.+.+..+|. ++.++.++|.+|+++.+|..|...++.++.++...
T Consensus 98 SEiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~-NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y------------ 164 (536)
T KOG4648|consen 98 SEIKERGNTYFKQGKYEEAIDCYSTAIAVYPH-NPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLY------------ 164 (536)
T ss_pred HHHHHhhhhhhhccchhHHHHHhhhhhccCCC-CccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHH------------
Confidence 33556788899999999999999999999996 46778889999999999999999999999988776
Q ss_pred hhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHH-----------------------HHHHHHHh
Q 005108 432 SEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLV-----------------------ARARARGN 488 (714)
Q Consensus 432 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~-----------------------~~~~~~g~ 488 (714)
..+|..++.+-..+|+..+|.+.++.++.+.|++.+....+..+... ...+..|.
T Consensus 165 --~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~Sl~E~~I~~KsT~G~~~A~Q~~~Q~l~~K~~G~ 242 (536)
T KOG4648|consen 165 --VKAYSRRMQARESLGNNMEAKKDCETVLALEPKNIELKKSLARINSLRERKIATKSTPGFTPARQGMIQILPIKKPGY 242 (536)
T ss_pred --HHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHHHHhcchHhhhHHhhcCCCCCccccchhhhccccCcch
Confidence 77889999999999999999999999999999998876665443211 01234577
Q ss_pred HHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHH
Q 005108 489 DLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAV 568 (714)
Q Consensus 489 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~ 568 (714)
.+++.|.++.++.+|...+..+..+..+..+ +..|.+..++++|+..+.+++..+|......-..+.+-.-+|...++.
T Consensus 243 ~Fsk~~~~~~~i~~~~~~~A~~~~~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~~~~s~~~~~s~~~~A~T~~~~~~E~K 321 (536)
T KOG4648|consen 243 KFSKKAMRSVPVVDVVSPRATIDDSNQLRIS-DEDIDKIFNSNCGIIEEVKKTNPKPTPMPDTSGPPKAETIAKTSKEVK 321 (536)
T ss_pred hhhhhhccccceeEeeccccccCccccCccc-HHHHHHHhhcchhHHHHHHhcCCCCCcCcccCCCchhHHHHhhhhhcC
Confidence 7888888888888888877766666555555 788889999999999999999999888777777788888888999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005108 569 RDFEVLRRELPDDNEIAESLFHAQVS 594 (714)
Q Consensus 569 ~~~~~al~~~p~~~~~~~~L~~~~~~ 594 (714)
..++.++.+.|.+......+.+....
T Consensus 322 ~~~~T~~~~~P~~~~~~~~~sr~~~~ 347 (536)
T KOG4648|consen 322 PTKQTAVKVAPAVETPKETETRKDTK 347 (536)
T ss_pred cchhheeeeccccccchhhhhhhccc
Confidence 99999999999988777766554433
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.7e-08 Score=99.86 Aligned_cols=173 Identities=14% Similarity=0.079 Sum_probs=139.3
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH---HHHHHHHHHCCCHHHHHHHHHHHHhcCCCc---HHHH
Q 005108 240 GDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFR---SNRAAALTGLGRIGEAVKECEEAVRLDPNY---WRAH 313 (714)
Q Consensus 240 ~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~---~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~ 313 (714)
.++..++..|..++..|+|++|++.|++++...|....+. +.+|.+|++++++++|+..|++.++.+|++ ..++
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 5778899999999999999999999999999999886554 899999999999999999999999999876 5688
Q ss_pred HHHHHHHHHcC---------------C---HHHHHHHHHhhcCCCChHHH-----HHH-----HHHHHHHHHhHHHHHcC
Q 005108 314 QRLGSLLVRLG---------------Q---VENARRHLCLSGQQADPTEV-----HRL-----QVVEKHLSKCTDARKVG 365 (714)
Q Consensus 314 ~~la~~~~~~g---------------~---~~~A~~~~~~al~~~~~~~~-----~~l-----~~~~~~~~~a~~~~~~g 365 (714)
+.+|.++..++ + ..+|+..|++.++..+.... ..+ ...+..+..+..|.+.|
T Consensus 110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~ 189 (243)
T PRK10866 110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRG 189 (243)
T ss_pred HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99998865543 1 35788888888873222211 111 12234456778899999
Q ss_pred CHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHcCCHHHHHHHhhcc
Q 005108 366 DWKSALREGDAAIAAGADF--SPQLSMCRVEALLKLHQLEDAESSLSNI 412 (714)
Q Consensus 366 ~~~~Al~~~~~al~~~p~~--~~~~~~~la~~~~~~g~~~~A~~~~~~a 412 (714)
.|..|+.-++.+++..|+. ..+.+..+..+|..+|..++|......+
T Consensus 190 ~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 190 AYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred chHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 9999999999999998853 4566777999999999999998876543
|
|
| >KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.3e-10 Score=121.91 Aligned_cols=98 Identities=24% Similarity=0.390 Sum_probs=88.8
Q ss_pred ehhhhHHhhhccCCCceEEEeecCCCccccccchHHHHHHhhC----CCcEEEEEecccCcchhhhCCccccceEEEEeC
Q 005108 615 VSSLEQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRY----PSINFLKVDIDESPGVAHAENVRIVPTFKIYKN 690 (714)
Q Consensus 615 i~~~e~~~~~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~----~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~ 690 (714)
+.+.+.|...|.....++|.|+|+||++|+.+.|.+++.+..+ +.+...+||..+..++|.+|+|+++||+.|++|
T Consensus 29 ~Lt~dnf~~~i~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~~~~~~~y~v~gyPTlkiFrn 108 (493)
T KOG0190|consen 29 VLTKDNFKETINGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEESDLASKYEVRGYPTLKIFRN 108 (493)
T ss_pred EEecccHHHHhccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchhhhhHhhhcCCCCCeEEEEec
Confidence 3445789999999999999999999999999999998887766 468899999999999999999999999999999
Q ss_pred CeEEEEEcCC-CHHHHHHHHhhh
Q 005108 691 GSRMKEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 691 G~~~~~~~g~-~~~~l~~~~~~~ 712 (714)
|.....+.|+ ..+.|..|+++.
T Consensus 109 G~~~~~Y~G~r~adgIv~wl~kq 131 (493)
T KOG0190|consen 109 GRSAQDYNGPREADGIVKWLKKQ 131 (493)
T ss_pred CCcceeccCcccHHHHHHHHHhc
Confidence 9987888899 999999999874
|
|
| >PRK11509 hydrogenase-1 operon protein HyaE; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=7.3e-10 Score=95.95 Aligned_cols=92 Identities=13% Similarity=0.124 Sum_probs=78.5
Q ss_pred HhhhccCCCceEEEeec--CCCccccccchHHHHHHhhCC-C-cEEEEEecccCcchhhhCCccccceEEEEeCCeEEEE
Q 005108 621 FRAAVSLPGVSVVHFKS--ASNLHCKQISPYVETLCGRYP-S-INFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKE 696 (714)
Q Consensus 621 ~~~~i~~~~~~vv~f~a--~~c~~C~~~~p~l~~l~~~~~-~-~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~~ 696 (714)
+...+...+..++.|-. .-++.+..+.-+|.++..+|+ . +.|++||+|++++++.+|||+++||+++||||+.+.+
T Consensus 27 ~~~~~~~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~~~LA~~fgV~siPTLl~FkdGk~v~~ 106 (132)
T PRK11509 27 LDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEAIGDRFGVFRFPATLVFTGGNYRGV 106 (132)
T ss_pred HHHHHhCCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCCCHHHHHHcCCccCCEEEEEECCEEEEE
Confidence 33344455566665554 347788888899999999998 3 8899999999999999999999999999999999999
Q ss_pred EcCC-CHHHHHHHHhhh
Q 005108 697 IVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 697 ~~g~-~~~~l~~~~~~~ 712 (714)
++|. +.+++.++|+++
T Consensus 107 i~G~~~k~~l~~~I~~~ 123 (132)
T PRK11509 107 LNGIHPWAELINLMRGL 123 (132)
T ss_pred EeCcCCHHHHHHHHHHH
Confidence 9999 999999999875
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=99.08 E-value=4.5e-10 Score=87.97 Aligned_cols=68 Identities=35% Similarity=0.574 Sum_probs=64.8
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHhcCC
Q 005108 240 GDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLG-RIGEAVKECEEAVRLDP 307 (714)
Q Consensus 240 ~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p 307 (714)
+++..|+.+|..++..|+|++|+.+|+++++.+|+++.+|+++|.++..+| ++++|++.|+++++++|
T Consensus 1 e~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 1 ENAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp TSHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 367899999999999999999999999999999999999999999999999 79999999999999987
|
... |
| >cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants | Back alignment and domain information |
|---|
Probab=99.08 E-value=2e-10 Score=98.06 Aligned_cols=85 Identities=14% Similarity=0.197 Sum_probs=78.2
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhCCC-cEEEEEecccCcchhhhCCcc--ccceEEEEeC--CeEEEEEcCC-C
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRYPS-INFLKVDIDESPGVAHAENVR--IVPTFKIYKN--GSRMKEIVCP-S 701 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~-~~~~~vd~d~~~~l~~~~~v~--~~Pt~~~~~~--G~~~~~~~g~-~ 701 (714)
..++++.|+++||++|..+.|.+++++.++.+ +.|++||+++.+.++..|+|. ++|+++++++ |+......|. +
T Consensus 12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~~~~~~~~i~~~~~P~~~~~~~~~~~k~~~~~~~~~ 91 (103)
T cd02982 12 GKPLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADDFGRHLEYFGLKEEDLPVIAIINLSDGKKYLMPEEELT 91 (103)
T ss_pred CCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhhHHHHHHcCCChhhCCEEEEEecccccccCCCccccC
Confidence 45889999999999999999999999999965 999999999999999999999 9999999988 8777777777 9
Q ss_pred HHHHHHHHhhh
Q 005108 702 RDMLEHSVRHY 712 (714)
Q Consensus 702 ~~~l~~~~~~~ 712 (714)
.+.|.++|+.+
T Consensus 92 ~~~l~~fi~~~ 102 (103)
T cd02982 92 AESLEEFVEDF 102 (103)
T ss_pred HHHHHHHHHhh
Confidence 99999999875
|
Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w |
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.3e-08 Score=113.45 Aligned_cols=239 Identities=16% Similarity=0.094 Sum_probs=186.7
Q ss_pred CCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCCCChHH-HHHHHHHHHHHHHhHHHHHcCCH
Q 005108 289 LGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTE-VHRLQVVEKHLSKCTDARKVGDW 367 (714)
Q Consensus 289 ~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~l~~~~~~~~~a~~~~~~g~~ 367 (714)
+++-.+..+.|++.+.-+|+..-.|..+...+++.++.++|.+..++|+...++.+ ...+...-+++ ......|.-
T Consensus 1437 l~~~pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~l---NlEn~yG~e 1513 (1710)
T KOG1070|consen 1437 LSRAPESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYL---NLENAYGTE 1513 (1710)
T ss_pred cccCCcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHH---hHHHhhCcH
Confidence 33344567789999999999999999999999999999999999999998543332 22333333333 334445677
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHh
Q 005108 368 KSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMAL 447 (714)
Q Consensus 368 ~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 447 (714)
+...+.|++|-+... ...++..+..+|...+++++|.++|+.+++...+. ..+|..++..++.+
T Consensus 1514 esl~kVFeRAcqycd--~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~--------------~~vW~~y~~fLl~~ 1577 (1710)
T KOG1070|consen 1514 ESLKKVFERACQYCD--AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQT--------------RKVWIMYADFLLRQ 1577 (1710)
T ss_pred HHHHHHHHHHHHhcc--hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcch--------------hhHHHHHHHHHhcc
Confidence 777888888888753 34567778899999999999999999998877754 66899999999999
Q ss_pred CcHHHHHHHHHHHhccCCC--CHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHH
Q 005108 448 GRFENAVTAAEKAGQIDPR--NVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWF 525 (714)
Q Consensus 448 g~~~~A~~~~~~al~~~p~--~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 525 (714)
++-+.|...+++|++.-|. +.+..... +.+.++.|+.+.+..+|+..+.-+|...++|.-+...-.
T Consensus 1578 ne~~aa~~lL~rAL~~lPk~eHv~~Iskf------------AqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~ei 1645 (1710)
T KOG1070|consen 1578 NEAEAARELLKRALKSLPKQEHVEFISKF------------AQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEI 1645 (1710)
T ss_pred cHHHHHHHHHHHHHhhcchhhhHHHHHHH------------HHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHH
Confidence 9999999999999998887 44444433 888999999999999999999999999999999999999
Q ss_pred HhCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHH
Q 005108 526 KLGQWERSVEDSNQALLIQ--PNYTKALLRRAASN 558 (714)
Q Consensus 526 ~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~ 558 (714)
++|+.+.+...|++++.+. |.....+|..=.-|
T Consensus 1646 k~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLey 1680 (1710)
T KOG1070|consen 1646 KHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEY 1680 (1710)
T ss_pred ccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHH
Confidence 9999999999999998753 44444444433333
|
|
| >KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.7e-09 Score=96.87 Aligned_cols=92 Identities=29% Similarity=0.466 Sum_probs=85.8
Q ss_pred ccceeeehhhhHHhhhccCCCceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCcchhhhCCccccceEEEE
Q 005108 609 GGEVEEVSSLEQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAHAENVRIVPTFKIY 688 (714)
Q Consensus 609 ~~~~~~i~~~e~~~~~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~ 688 (714)
.|+..++.+...|........-+|++||-+....|+-+...|+.|+.++.+..|++||++..|.|+..++|+.+|++.+|
T Consensus 65 hG~y~ev~~Ekdf~~~~~kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~eTrFikvnae~~PFlv~kL~IkVLP~v~l~ 144 (211)
T KOG1672|consen 65 HGEYEEVASEKDFFEEVKKSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVETRFIKVNAEKAPFLVTKLNIKVLPTVALF 144 (211)
T ss_pred CceEEEeccHHHHHHHhhcCceEEEEEEcCCCcceehHHHHHHHHHHhcccceEEEEecccCceeeeeeeeeEeeeEEEE
Confidence 35677788777888777777899999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCeEEEEEcCC
Q 005108 689 KNGSRMKEIVCP 700 (714)
Q Consensus 689 ~~G~~~~~~~g~ 700 (714)
+||+.+++++||
T Consensus 145 k~g~~~D~iVGF 156 (211)
T KOG1672|consen 145 KNGKTVDYVVGF 156 (211)
T ss_pred EcCEEEEEEeeH
Confidence 999999999998
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=3.3e-09 Score=99.86 Aligned_cols=120 Identities=18% Similarity=0.156 Sum_probs=105.3
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHH
Q 005108 238 CGGDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRN---AAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQ 314 (714)
Q Consensus 238 ~p~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 314 (714)
.+..+..++.+|..+...|++++|+.+|+++++..|+. ..++..+|.++..+|++++|+..|+++++.+|++...+.
T Consensus 31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 110 (172)
T PRK02603 31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALN 110 (172)
T ss_pred HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHH
Confidence 34577889999999999999999999999999987653 578999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 005108 315 RLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADF 384 (714)
Q Consensus 315 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~ 384 (714)
.+|.++...|+...+...+++++ ..+++|++.+++++..+|+.
T Consensus 111 ~lg~~~~~~g~~~~a~~~~~~A~---------------------------~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 111 NIAVIYHKRGEKAEEAGDQDEAE---------------------------ALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHHHHcCChHhHhhCHHHHH---------------------------HHHHHHHHHHHHHHhhCchh
Confidence 99999999999888877665442 34678888999999988874
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.5e-09 Score=95.55 Aligned_cols=113 Identities=17% Similarity=0.145 Sum_probs=102.0
Q ss_pred HHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccH
Q 005108 485 ARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKW 564 (714)
Q Consensus 485 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 564 (714)
..|.-++..|++++|...|+-....+|.++..|..||.|+..+++|++|+..|..+..++++++...+..|.||..+|+.
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCH
Confidence 44899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhh
Q 005108 565 ADAVRDFEVLRRELPDDNEIAESLFHAQVSLKKS 598 (714)
Q Consensus 565 ~eA~~~~~~al~~~p~~~~~~~~L~~~~~~l~~~ 598 (714)
++|+..|+.+++ .|.+..+.+.-......+++.
T Consensus 122 ~~A~~~f~~a~~-~~~~~~l~~~A~~~L~~l~~~ 154 (165)
T PRK15331 122 AKARQCFELVNE-RTEDESLRAKALVYLEALKTA 154 (165)
T ss_pred HHHHHHHHHHHh-CcchHHHHHHHHHHHHHHHcc
Confidence 999999999998 677777766555555555543
|
|
| >TIGR00412 redox_disulf_2 small redox-active disulfide protein 2 | Back alignment and domain information |
|---|
Probab=99.05 E-value=4.7e-10 Score=89.12 Aligned_cols=72 Identities=14% Similarity=0.240 Sum_probs=59.8
Q ss_pred EEEeecCCCccccccchHHHHHHhhCCC-cEEEEEecccCcchhhhCCccccceEEEEeCCeEEEEEcCC--CHHHHHHH
Q 005108 632 VVHFKSASNLHCKQISPYVETLCGRYPS-INFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKEIVCP--SRDMLEHS 708 (714)
Q Consensus 632 vv~f~a~~c~~C~~~~p~l~~l~~~~~~-~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~~~~g~--~~~~l~~~ 708 (714)
.+.||++||++|+.+.|.++++..+++. +.|++|| ..+.+.+|+|.++||+++ ||+.+ +.|. ..++|++.
T Consensus 2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~---~~~~a~~~~v~~vPti~i--~G~~~--~~G~~~~~~~l~~~ 74 (76)
T TIGR00412 2 KIQIYGTGCANCQMTEKNVKKAVEELGIDAEFEKVT---DMNEILEAGVTATPGVAV--DGELV--IMGKIPSKEEIKEI 74 (76)
T ss_pred EEEEECCCCcCHHHHHHHHHHHHHHcCCCeEEEEeC---CHHHHHHcCCCcCCEEEE--CCEEE--EEeccCCHHHHHHH
Confidence 4789999999999999999999999874 7787777 233478899999999999 99988 6674 66888877
Q ss_pred Hh
Q 005108 709 VR 710 (714)
Q Consensus 709 ~~ 710 (714)
|+
T Consensus 75 l~ 76 (76)
T TIGR00412 75 LK 76 (76)
T ss_pred hC
Confidence 63
|
This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin. |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=6.5e-09 Score=97.85 Aligned_cols=119 Identities=17% Similarity=0.240 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCC
Q 005108 434 AYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSN 513 (714)
Q Consensus 434 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~ 513 (714)
+..++.+|..+...|++++|+.+|++++...|+....... +..+|.++...|++++|+.+|+++++..|.+
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~---------~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 105 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYI---------LYNMGIIYASNGEHDKALEYYHQALELNPKQ 105 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHH---------HHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence 6778888999999999999999999998877654321111 1234888899999999999999999998888
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Q 005108 514 SVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDD 581 (714)
Q Consensus 514 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~ 581 (714)
...+..+|.+|...|+...+...+++++. .+++|+++++++++.+|++
T Consensus 106 ~~~~~~lg~~~~~~g~~~~a~~~~~~A~~--------------------~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 106 PSALNNIAVIYHKRGEKAEEAGDQDEAEA--------------------LFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHHHHHHHHHcCChHhHhhCHHHHHH--------------------HHHHHHHHHHHHHhhCchh
Confidence 88888889999888888887777666543 3788999999999999987
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.6e-09 Score=88.88 Aligned_cols=97 Identities=32% Similarity=0.509 Sum_probs=92.0
Q ss_pred HHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcc
Q 005108 484 RARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEK 563 (714)
Q Consensus 484 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 563 (714)
..+|..+...|++++|+..++++++..|.+..+++.+|.++...+++++|++.|+++++..|.+..++..++.++...|+
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGK 83 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHh
Confidence 34599999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCC
Q 005108 564 WADAVRDFEVLRRELPD 580 (714)
Q Consensus 564 ~~eA~~~~~~al~~~p~ 580 (714)
+++|..+++++++.+|+
T Consensus 84 ~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 84 YEEALEAYEKALELDPN 100 (100)
T ss_pred HHHHHHHHHHHHccCCC
Confidence 99999999999988773
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.04 E-value=1e-08 Score=103.62 Aligned_cols=146 Identities=18% Similarity=0.208 Sum_probs=119.2
Q ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHhccCC----CCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhcc
Q 005108 434 AYTFFVRAQIEMALGRFENAVTAAEKAGQIDP----RNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRF 509 (714)
Q Consensus 434 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~ 509 (714)
+......|..|++.|+|..|+..|++++..-. .+.+--... .-.....+.+++.++.++++|.+|+..++++|.+
T Consensus 208 A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~-~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~ 286 (397)
T KOG0543|consen 208 ADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKA-EALKLACHLNLAACYLKLKEYKEAIESCNKVLEL 286 (397)
T ss_pred HHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHH-HHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc
Confidence 55667789999999999999999999886433 111111111 1112344567899999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHH-HHHHHHHHHhCCC
Q 005108 510 DPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADA-VRDFEVLRRELPD 580 (714)
Q Consensus 510 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA-~~~~~~al~~~p~ 580 (714)
+|+|..++|..|.++..+|+|+.|+..|+++++++|+|..+...+..+..+..++.+. .+.|.+++...+.
T Consensus 287 ~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~~ 358 (397)
T KOG0543|consen 287 DPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKLAE 358 (397)
T ss_pred CCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 9999999999999999999999999999999999999999999999999888777665 7788887765543
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.7e-08 Score=98.40 Aligned_cols=171 Identities=15% Similarity=0.097 Sum_probs=131.7
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhcc
Q 005108 384 FSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQI 463 (714)
Q Consensus 384 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 463 (714)
..+..++..|..+...|++++|++.|++++...|... ....+.+.+|.++++.+++++|+..+++.++.
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~-----------~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGP-----------YSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCh-----------HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 3555666688889999999999999999999999872 11334688899999999999999999999999
Q ss_pred CCCCHHHHHHHHhHHHHHHHHHHHhHHhhCc------------------CHHHHHHHHHHhhccCCCCH-----------
Q 005108 464 DPRNVEVAVLLNNVKLVARARARGNDLFKSE------------------RFTEACQAYGEGLRFDPSNS----------- 514 (714)
Q Consensus 464 ~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g------------------~~~~A~~~~~~al~~~p~~~----------- 514 (714)
+|+++.+-..+.. +|.++...+ ...+|+..|++.++..|+..
T Consensus 99 ~P~~~~~~~a~Y~---------~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~ 169 (243)
T PRK10866 99 NPTHPNIDYVLYM---------RGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVF 169 (243)
T ss_pred CcCCCchHHHHHH---------HHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHH
Confidence 9988765443322 244432222 23578899999999999862
Q ss_pred ------HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhccHHHHHHHHHHH
Q 005108 515 ------VLYCNRAACWFKLGQWERSVEDSNQALLIQPNY---TKALLRRAASNSKLEKWADAVRDFEVL 574 (714)
Q Consensus 515 ------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~eA~~~~~~a 574 (714)
.--+..|..|.+.|.|..|+.-++.+++..|+. .++++.+..+|..+|..++|.......
T Consensus 170 l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 170 LKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 122346777899999999999999999987765 488889999999999999998876543
|
|
| >TIGR02187 GlrX_arch Glutaredoxin-like domain protein | Back alignment and domain information |
|---|
Probab=99.02 E-value=7.9e-10 Score=107.77 Aligned_cols=80 Identities=16% Similarity=0.145 Sum_probs=72.8
Q ss_pred CceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCcchhhhCCccccceEEEEeCCeEEEEEcCC-CHHHHHH
Q 005108 629 GVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKEIVCP-SRDMLEH 707 (714)
Q Consensus 629 ~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~~~~g~-~~~~l~~ 707 (714)
.+.++.||++||++|..+.|.++++..+++++.+.++|.++.++++..|+|+++||++++++|++ +.|. +.++|.+
T Consensus 134 pv~I~~F~a~~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~~~~~~~~~~~V~~vPtl~i~~~~~~---~~G~~~~~~l~~ 210 (215)
T TIGR02187 134 PVRIEVFVTPTCPYCPYAVLMAHKFALANDKILGEMIEANENPDLAEKYGVMSVPKIVINKGVEE---FVGAYPEEQFLE 210 (215)
T ss_pred CcEEEEEECCCCCCcHHHHHHHHHHHHhcCceEEEEEeCCCCHHHHHHhCCccCCEEEEecCCEE---EECCCCHHHHHH
Confidence 35666799999999999999999999988889999999999999999999999999999999874 7888 8899999
Q ss_pred HHhh
Q 005108 708 SVRH 711 (714)
Q Consensus 708 ~~~~ 711 (714)
+|.+
T Consensus 211 ~l~~ 214 (215)
T TIGR02187 211 YILS 214 (215)
T ss_pred HHHh
Confidence 8875
|
This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different. |
| >cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.8e-10 Score=98.57 Aligned_cols=75 Identities=21% Similarity=0.286 Sum_probs=62.9
Q ss_pred hhHHhhhccC-CCceEEEeecCCCccccccchHHHHHHhhCC----CcEEEEEecc--cCcchhhhCCccccceEEEEeC
Q 005108 618 LEQFRAAVSL-PGVSVVHFKSASNLHCKQISPYVETLCGRYP----SINFLKVDID--ESPGVAHAENVRIVPTFKIYKN 690 (714)
Q Consensus 618 ~e~~~~~i~~-~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~----~~~~~~vd~d--~~~~l~~~~~v~~~Pt~~~~~~ 690 (714)
...|...+.. ..++++.||++||++|+.+.|.++++..++. .+.|..+|++ ...++++.|+|+++||+++|++
T Consensus 8 ~~~f~~~i~~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~Pt~~lf~~ 87 (114)
T cd02992 8 AASFNSALLGSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTGYPTLRYFPP 87 (114)
T ss_pred HHhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCCCCEEEEECC
Confidence 3456665544 4589999999999999999999999988763 2888899975 4678999999999999999999
Q ss_pred Ce
Q 005108 691 GS 692 (714)
Q Consensus 691 G~ 692 (714)
|.
T Consensus 88 ~~ 89 (114)
T cd02992 88 FS 89 (114)
T ss_pred CC
Confidence 98
|
QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=99.02 E-value=5.6e-09 Score=91.61 Aligned_cols=107 Identities=16% Similarity=0.249 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCH---HHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccC
Q 005108 434 AYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNV---EVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFD 510 (714)
Q Consensus 434 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~ 510 (714)
...++.+|..+...|++++|++.|++++..+|++. .+++.+ |.++...|++++|+.+|++++..+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l------------~~~~~~~~~~~~A~~~~~~~~~~~ 69 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWL------------GEAYYAQGKYADAAKAFLAVVKKY 69 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH------------HHHHHhhccHHHHHHHHHHHHHHC
Confidence 34689999999999999999999999999988763 444444 999999999999999999999998
Q ss_pred CCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHH
Q 005108 511 PSN---SVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALL 552 (714)
Q Consensus 511 p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 552 (714)
|++ +.+++.+|.++.++|++++|+..++++++..|++..+..
T Consensus 70 p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 70 PKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred CCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChhHHH
Confidence 875 678999999999999999999999999999999875543
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent | Back alignment and domain information |
|---|
Probab=99.01 E-value=7.8e-10 Score=117.30 Aligned_cols=96 Identities=14% Similarity=0.091 Sum_probs=78.1
Q ss_pred hhhHHhhhcc---CCCceEEEeecCCCccccccchHHHHHHhhCCC--cEEEEEecccCc-chh-hhCCccccceEEEEe
Q 005108 617 SLEQFRAAVS---LPGVSVVHFKSASNLHCKQISPYVETLCGRYPS--INFLKVDIDESP-GVA-HAENVRIVPTFKIYK 689 (714)
Q Consensus 617 ~~e~~~~~i~---~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~--~~~~~vd~d~~~-~l~-~~~~v~~~Pt~~~~~ 689 (714)
+.++|+..+. ...+++|+||++||++|+.+.|.++++..++.+ +.|++||+|..+ .++ +.|+|.++|||++|+
T Consensus 357 ~~~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~~~~~~~~~I~~~PTii~Fk 436 (463)
T TIGR00424 357 SRPGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGSFPTILFFP 436 (463)
T ss_pred CHHHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCccHHHHHHcCCCccceEEEEE
Confidence 3356777664 567899999999999999999999999999863 889999998754 344 789999999999999
Q ss_pred CCeE-EEEEc-CC-CHHHHHHHHhhh
Q 005108 690 NGSR-MKEIV-CP-SRDMLEHSVRHY 712 (714)
Q Consensus 690 ~G~~-~~~~~-g~-~~~~l~~~~~~~ 712 (714)
+|.. ...+. |. +.+.|..+|+-+
T Consensus 437 ~g~~~~~~Y~~g~R~~e~L~~Fv~~~ 462 (463)
T TIGR00424 437 KHSSRPIKYPSEKRDVDSLMSFVNLL 462 (463)
T ss_pred CCCCCceeCCCCCCCHHHHHHHHHhh
Confidence 9863 33454 45 999999998754
|
This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis. |
| >TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.1e-09 Score=99.33 Aligned_cols=84 Identities=13% Similarity=0.245 Sum_probs=67.1
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccC------------cchh-hhC---CccccceEEEE-eC
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDES------------PGVA-HAE---NVRIVPTFKIY-KN 690 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~------------~~l~-~~~---~v~~~Pt~~~~-~~ 690 (714)
.+..+++||++||++|++..|.++++.+++ ++.++.|++|+. .... ..| +|.++||++++ ++
T Consensus 50 ~~~~lvnFWAsWCppCr~e~P~L~~l~~~~-~~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~LID~~ 128 (153)
T TIGR02738 50 DDYALVFFYQSTCPYCHQFAPVLKRFSQQF-GLPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFLVNVN 128 (153)
T ss_pred CCCEEEEEECCCChhHHHHHHHHHHHHHHc-CCcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEEEeCC
Confidence 446699999999999999999999999988 477777777753 2232 345 89999998777 77
Q ss_pred CeE-EEEEcCC-CHHHHHHHHhhh
Q 005108 691 GSR-MKEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 691 G~~-~~~~~g~-~~~~l~~~~~~~ 712 (714)
|.. +....|. +.++|++.|+++
T Consensus 129 G~~i~~~~~G~~s~~~l~~~I~~l 152 (153)
T TIGR02738 129 TRKAYPVLQGAVDEAELANRMDEI 152 (153)
T ss_pred CCEEEEEeecccCHHHHHHHHHHh
Confidence 765 5678899 999999988764
|
This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase. |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.3e-08 Score=111.28 Aligned_cols=144 Identities=12% Similarity=0.044 Sum_probs=116.6
Q ss_pred hHHHHHHHHHHHHHhCc---HHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHh--hCcCHHHHHHHHHHhh
Q 005108 433 EAYTFFVRAQIEMALGR---FENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLF--KSERFTEACQAYGEGL 507 (714)
Q Consensus 433 ~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~--~~g~~~~A~~~~~~al 507 (714)
.++-++..|..+...++ +++|+.+|+++++++|++..++..+...... ...+. ...+..++.+..++++
T Consensus 338 ~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~------~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 338 AALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIV------RHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH------HHhcCCccHHHHHHHHHHHHHhh
Confidence 37777888888876654 8899999999999999998888765221100 00011 1234567777777766
Q ss_pred cc--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHH
Q 005108 508 RF--DPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNE 583 (714)
Q Consensus 508 ~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~ 583 (714)
.+ ++.++.+|..+|..+...|++++|...++++++++|+ ..+|..+|.++...|++++|++.|++|++++|.++.
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 64 7778899999999999999999999999999999995 789999999999999999999999999999999885
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=99.01 E-value=3.5e-08 Score=95.36 Aligned_cols=170 Identities=16% Similarity=0.195 Sum_probs=117.1
Q ss_pred HHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhh
Q 005108 352 EKHLSKCTDARKVGDWKSALREGDAAIAAGAD--FSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFG 429 (714)
Q Consensus 352 ~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 429 (714)
...+..+..+...|+|.+|+..|++++...|. ......+.+|.++.+.|++++|+..+++.++..|.++.
T Consensus 6 ~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~-------- 77 (203)
T PF13525_consen 6 EALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPK-------- 77 (203)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TT--------
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcc--------
Confidence 45667778899999999999999999999884 45677888999999999999999999999999999842
Q ss_pred hhhhHHHHHHHHHHHHHh-----------CcHHHHHHHHHHHhccCCCCHHHHHHHHh---H--HHHHHHHHHHhHHhhC
Q 005108 430 MLSEAYTFFVRAQIEMAL-----------GRFENAVTAAEKAGQIDPRNVEVAVLLNN---V--KLVARARARGNDLFKS 493 (714)
Q Consensus 430 ~~~~~~~~~~la~~~~~~-----------g~~~~A~~~~~~al~~~p~~~~~~~~l~~---l--~~~~~~~~~g~~~~~~ 493 (714)
..++++.+|.+++.+ +...+|+..|+..+...|+..-+...... + ..+......|..|++.
T Consensus 78 ---~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~ 154 (203)
T PF13525_consen 78 ---ADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKR 154 (203)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred ---hhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 255677777776554 33568999999999999988654332211 1 2233344556666666
Q ss_pred cCHHHHHHHHHHhhccCCCC---HHHHHHHHHHHHHhCCHHH
Q 005108 494 ERFTEACQAYGEGLRFDPSN---SVLYCNRAACWFKLGQWER 532 (714)
Q Consensus 494 g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~ 532 (714)
|.|..|+..|+.+++..|+. .+++..++.+|.++|..+.
T Consensus 155 ~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~ 196 (203)
T PF13525_consen 155 GKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQA 196 (203)
T ss_dssp T-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHH
T ss_pred ccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHH
Confidence 66666666666666666654 3455556666666666553
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.2e-08 Score=96.76 Aligned_cols=166 Identities=16% Similarity=0.132 Sum_probs=114.4
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHh
Q 005108 382 ADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAG 461 (714)
Q Consensus 382 p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 461 (714)
|+..+..++..|..++..|++++|+..|++++...|...- ...+.+.+|.+++..|++++|+..+++.+
T Consensus 1 p~~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~-----------a~~A~l~la~a~y~~~~y~~A~~~~~~fi 69 (203)
T PF13525_consen 1 PEDTAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPY-----------APQAQLMLAYAYYKQGDYEEAIAAYERFI 69 (203)
T ss_dssp ----HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTT-----------HHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChH-----------HHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3445666777999999999999999999999999998632 25678899999999999999999999999
Q ss_pred ccCCCCHHHHHHHHhHHHHHHHHHHHhH-----------HhhCcCHHHHHHHHHHhhccCCCCHH---------------
Q 005108 462 QIDPRNVEVAVLLNNVKLVARARARGND-----------LFKSERFTEACQAYGEGLRFDPSNSV--------------- 515 (714)
Q Consensus 462 ~~~p~~~~~~~~l~~l~~~~~~~~~g~~-----------~~~~g~~~~A~~~~~~al~~~p~~~~--------------- 515 (714)
+..|+++.+-..+.. +|.+ ....+...+|+..|+..++..|+...
T Consensus 70 ~~yP~~~~~~~A~Y~---------~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~l 140 (203)
T PF13525_consen 70 KLYPNSPKADYALYM---------LGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRL 140 (203)
T ss_dssp HH-TT-TTHHHHHHH---------HHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHH
T ss_pred HHCCCCcchhhHHHH---------HHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHH
Confidence 999998654333211 1333 33445567899999999999998732
Q ss_pred --HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhccHHHH
Q 005108 516 --LYCNRAACWFKLGQWERSVEDSNQALLIQPNYT---KALLRRAASNSKLEKWADA 567 (714)
Q Consensus 516 --~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~eA 567 (714)
--+.+|..|.+.|.|..|+..++.+++..|+.. +++..++.+|.++|..+.|
T Consensus 141 a~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 141 AEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 123356667777777777777777777777654 5666777777777776643
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.99 E-value=8.5e-10 Score=90.12 Aligned_cols=81 Identities=27% Similarity=0.463 Sum_probs=73.4
Q ss_pred CcCHHHHHHHHHHhhccCCC--CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHH
Q 005108 493 SERFTEACQAYGEGLRFDPS--NSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRD 570 (714)
Q Consensus 493 ~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~ 570 (714)
.|+|++|+.+|+++++..|. +...++.+|.||++.|+|++|+..+++ ++.++.+...++.+|.++.++|++++|++.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 68999999999999999985 567888899999999999999999999 888888889999999999999999999999
Q ss_pred HHHH
Q 005108 571 FEVL 574 (714)
Q Consensus 571 ~~~a 574 (714)
|+++
T Consensus 81 l~~~ 84 (84)
T PF12895_consen 81 LEKA 84 (84)
T ss_dssp HHHH
T ss_pred HhcC
Confidence 9875
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.9e-08 Score=97.69 Aligned_cols=289 Identities=13% Similarity=0.046 Sum_probs=205.8
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHH
Q 005108 278 FRSNRAAALTGLGRIGEAVKECEEAVRLDPNY---WRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKH 354 (714)
Q Consensus 278 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~ 354 (714)
-....|.-++...++++|+..+.+.+..-.+. ...+-.+..+...+|.|++++.+--..+. .-.+........+.+
T Consensus 8 ~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~-~a~~~~ds~~~~ea~ 86 (518)
T KOG1941|consen 8 KQIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQID-TARELEDSDFLLEAY 86 (518)
T ss_pred HHHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 34566777888899999999998888654332 33455566778888999888775433222 001112234456778
Q ss_pred HHHhHHHHHcCCHHHHHHHHHHHHHcC---C-CCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhh
Q 005108 355 LSKCTDARKVGDWKSALREGDAAIAAG---A-DFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGM 430 (714)
Q Consensus 355 ~~~a~~~~~~g~~~~Al~~~~~al~~~---p-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 430 (714)
++++..+.+..++.+++.+-...+.+. + ...-.....++.++..++.++++++.|+++++...++ .+.
T Consensus 87 lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~--------~D~ 158 (518)
T KOG1941|consen 87 LNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNN--------DDA 158 (518)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhcc--------CCc
Confidence 888888889999999998887777652 2 2223455668999999999999999999999876554 222
Q ss_pred hhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCH-HHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhcc
Q 005108 431 LSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNV-EVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRF 509 (714)
Q Consensus 431 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~ 509 (714)
+.+..++..++..+..+.++++|+-+..++.++..... .-|. .......++.++..+..+|+.-+|.++++++.++
T Consensus 159 ~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~---~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~kl 235 (518)
T KOG1941|consen 159 MLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWS---LKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKL 235 (518)
T ss_pred eeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchh---HHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 33456788999999999999999999999987643221 1111 1112234456799999999999999999999886
Q ss_pred C------CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHhccHHH-----HHHHHH
Q 005108 510 D------PSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPN------YTKALLRRAASNSKLEKWAD-----AVRDFE 572 (714)
Q Consensus 510 ~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~e-----A~~~~~ 572 (714)
. +-......-+|.+|...|+.+.|..-|++|....-. ..+++...+.++....-..+ |+++-+
T Consensus 236 al~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale~n~ 315 (518)
T KOG1941|consen 236 ALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLETLRLQNKICNCRALEFNT 315 (518)
T ss_pred HHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcccccchhHHHH
Confidence 2 233566778999999999999999999999875321 24566667777766554444 888777
Q ss_pred HHHHhC
Q 005108 573 VLRREL 578 (714)
Q Consensus 573 ~al~~~ 578 (714)
+++++.
T Consensus 316 r~levA 321 (518)
T KOG1941|consen 316 RLLEVA 321 (518)
T ss_pred HHHHHH
Confidence 777764
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.5e-08 Score=95.10 Aligned_cols=125 Identities=18% Similarity=0.116 Sum_probs=99.2
Q ss_pred CcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCC---HHHHHHHHHHH
Q 005108 448 GRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSN---SVLYCNRAACW 524 (714)
Q Consensus 448 g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~ 524 (714)
..|..+...+.+.++..+.+......+ ..|.++...|++++|+..|++++.+.|+. +.+++++|.++
T Consensus 13 ~~~~~~~~~l~~~~~~~~~~~~a~~~~----------~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~ 82 (168)
T CHL00033 13 KTFTIVADILLRILPTTSGEKEAFTYY----------RDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIH 82 (168)
T ss_pred cccccchhhhhHhccCCchhHHHHHHH----------HHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHH
Confidence 445666666666655555554433322 44999999999999999999999887653 46899999999
Q ss_pred HHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-------HhccHH-------HHHHHHHHHHHhCCCCH
Q 005108 525 FKLGQWERSVEDSNQALLIQPNYTKALLRRAASNS-------KLEKWA-------DAVRDFEVLRRELPDDN 582 (714)
Q Consensus 525 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-------~~g~~~-------eA~~~~~~al~~~p~~~ 582 (714)
..+|++++|++.|+++++++|.+...+..+|.++. .+|+++ +|+..|++++..+|++.
T Consensus 83 ~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 83 TSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred HHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 99999999999999999999999999999999998 777766 56666667777777554
|
|
| >cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells | Back alignment and domain information |
|---|
Probab=98.99 E-value=7e-10 Score=94.29 Aligned_cols=92 Identities=12% Similarity=0.123 Sum_probs=71.6
Q ss_pred hhhHHhhhccCCCceEEEeec--CCCccccccchHHHHHHhhC----CCcEEEEEecc-----cCcchhhhCCcc--ccc
Q 005108 617 SLEQFRAAVSLPGVSVVHFKS--ASNLHCKQISPYVETLCGRY----PSINFLKVDID-----ESPGVAHAENVR--IVP 683 (714)
Q Consensus 617 ~~e~~~~~i~~~~~~vv~f~a--~~c~~C~~~~p~l~~l~~~~----~~~~~~~vd~d-----~~~~l~~~~~v~--~~P 683 (714)
+...|...+.....++|.|++ +||+ + .|..++|+.++ ..+.+.+||++ ++.+|+++|+|. ++|
T Consensus 7 ~~~nF~~~v~~~~~vlV~F~A~~Pwc~---k-~~~~~~LA~e~~~aa~~v~lakVd~~d~~~~~~~~L~~~y~I~~~gyP 82 (116)
T cd03007 7 DTVTFYKVIPKFKYSLVKFDTAYPYGE---K-HEAFTRLAESSASATDDLLVAEVGIKDYGEKLNMELGERYKLDKESYP 82 (116)
T ss_pred ChhhHHHHHhcCCcEEEEEeCCCCCCC---C-hHHHHHHHHHHHhhcCceEEEEEecccccchhhHHHHHHhCCCcCCCC
Confidence 346788888888899999999 7777 2 25555555444 13789999994 567899999999 999
Q ss_pred eEEEEeCCe--EEEEEcC--CCHHHHHHHHhhh
Q 005108 684 TFKIYKNGS--RMKEIVC--PSRDMLEHSVRHY 712 (714)
Q Consensus 684 t~~~~~~G~--~~~~~~g--~~~~~l~~~~~~~ 712 (714)
|+++|++|. ....+.| .+.+.|..+|.+.
T Consensus 83 Tl~lF~~g~~~~~~~Y~G~~r~~~~lv~~v~~~ 115 (116)
T cd03007 83 VIYLFHGGDFENPVPYSGADVTVDALQRFLKGN 115 (116)
T ss_pred EEEEEeCCCcCCCccCCCCcccHHHHHHHHHhc
Confidence 999999995 3345666 4999999999874
|
It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase. |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.1e-08 Score=94.05 Aligned_cols=111 Identities=22% Similarity=0.151 Sum_probs=94.4
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 005108 241 DAEELKRMGNELYRKGCFGEALSMYDKAISLAPRN---AAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLG 317 (714)
Q Consensus 241 ~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la 317 (714)
.+..++.+|..+...|++++|+..|++++.+.|+. +.++.++|.++...|++++|+..|++++.++|.+...+..+|
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la 113 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence 46788999999999999999999999999987653 468999999999999999999999999999999999999999
Q ss_pred HHHH-------HcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 005108 318 SLLV-------RLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFS 385 (714)
Q Consensus 318 ~~~~-------~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~ 385 (714)
.++. .+|++++|+.. +++|+..|++++..+|...
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~----------------------------------~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAW----------------------------------FDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHH----------------------------------HHHHHHHHHHHHHhCcccH
Confidence 9998 45555555443 4566778888888888643
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.98 E-value=8e-07 Score=88.66 Aligned_cols=175 Identities=17% Similarity=0.109 Sum_probs=113.9
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH--HHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 005108 240 GDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRA--AALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLG 317 (714)
Q Consensus 240 ~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la--~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la 317 (714)
..+-.+...++..+..|+|++|.+-|+.++. +|.. ..+-.+| ..-..+|..+.|+++.+++-...|.-..++...-
T Consensus 118 qepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEt-RllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtL 195 (531)
T COG3898 118 QEPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPET-RLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATL 195 (531)
T ss_pred chHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHH-HHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHH
Confidence 3566777788999999999999999998874 3321 2222222 2234689999999999999999999999999888
Q ss_pred HHHHHcCCHHHHHHHHHhhcC--CCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 005108 318 SLLVRLGQVENARRHLCLSGQ--QADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEA 395 (714)
Q Consensus 318 ~~~~~~g~~~~A~~~~~~al~--~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~ 395 (714)
...+..|+|+.|+++.+.... ..++........+ .+..++. ..-.-+...|...-.+++++.|++.+.... -+..
T Consensus 196 e~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAv-LLtAkA~-s~ldadp~~Ar~~A~~a~KL~pdlvPaav~-AAra 272 (531)
T COG3898 196 EARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAV-LLTAKAM-SLLDADPASARDDALEANKLAPDLVPAAVV-AARA 272 (531)
T ss_pred HHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHH-HHHHHHH-HHhcCChHHHHHHHHHHhhcCCccchHHHH-HHHH
Confidence 889999999999999876543 2222222111111 0111111 112234555666666666666666555544 5566
Q ss_pred HHHcCCHHHHHHHhhccccCCCCC
Q 005108 396 LLKLHQLEDAESSLSNIPKIEPST 419 (714)
Q Consensus 396 ~~~~g~~~~A~~~~~~al~~~p~~ 419 (714)
+++.|+..++-.+++.+.+.+|..
T Consensus 273 lf~d~~~rKg~~ilE~aWK~ePHP 296 (531)
T COG3898 273 LFRDGNLRKGSKILETAWKAEPHP 296 (531)
T ss_pred HHhccchhhhhhHHHHHHhcCCCh
Confidence 666666666666666666666654
|
|
| >TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.2e-09 Score=120.89 Aligned_cols=96 Identities=25% Similarity=0.403 Sum_probs=85.4
Q ss_pred hhhHHhhhccCCCceEEEeecCCCccccccchHHHHHHhhC----CCcEEEEEecccCcchhhhCCccccceEEEEeCCe
Q 005108 617 SLEQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRY----PSINFLKVDIDESPGVAHAENVRIVPTFKIYKNGS 692 (714)
Q Consensus 617 ~~e~~~~~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~----~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~ 692 (714)
+.+.|..++....+++|.||++||++|+.+.|.+.++...+ +++.|+.||+++..++++.|+|.++||+++|++|+
T Consensus 7 ~~~~~~~~i~~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~ 86 (462)
T TIGR01130 7 TKDNFDDFIKSHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKDLAQKYGVSGYPTLKIFRNGE 86 (462)
T ss_pred CHHHHHHHHhcCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcHHHHHhCCCccccEEEEEeCCc
Confidence 34577777777889999999999999999999999887765 34899999999999999999999999999999999
Q ss_pred E-EEEEcCC-CHHHHHHHHhhh
Q 005108 693 R-MKEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 693 ~-~~~~~g~-~~~~l~~~~~~~ 712 (714)
. +.++.|. +.+.|.++|.+.
T Consensus 87 ~~~~~~~g~~~~~~l~~~i~~~ 108 (462)
T TIGR01130 87 DSVSDYNGPRDADGIVKYMKKQ 108 (462)
T ss_pred cceeEecCCCCHHHHHHHHHHh
Confidence 8 7888998 999999998774
|
Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs). |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.4e-09 Score=88.73 Aligned_cols=82 Identities=29% Similarity=0.458 Sum_probs=73.4
Q ss_pred HcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 005108 254 RKGCFGEALSMYDKAISLAPR--NAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVRLGQVENARR 331 (714)
Q Consensus 254 ~~g~~~~Al~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~ 331 (714)
.+|+|++|+.+|+++++.+|. +..+++.+|.||+++|+|++|+..+++ .+.++.+...++.+|.++.++|++++|+.
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CCccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 368999999999999999995 467788899999999999999999999 88888888999999999999999999999
Q ss_pred HHHhh
Q 005108 332 HLCLS 336 (714)
Q Consensus 332 ~~~~a 336 (714)
+|+++
T Consensus 80 ~l~~~ 84 (84)
T PF12895_consen 80 ALEKA 84 (84)
T ss_dssp HHHHH
T ss_pred HHhcC
Confidence 99764
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.9e-07 Score=99.31 Aligned_cols=294 Identities=17% Similarity=0.072 Sum_probs=178.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 005108 243 EELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVR 322 (714)
Q Consensus 243 ~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~ 322 (714)
+.-...|....+.|.+++|+.+|.+.-+. -.+-..|...|.+++|.+..+.-=++ .-...|+++|.-+..
T Consensus 801 e~eakvAvLAieLgMlEeA~~lYr~ckR~--------DLlNKlyQs~g~w~eA~eiAE~~DRi--HLr~Tyy~yA~~Lea 870 (1416)
T KOG3617|consen 801 EDEAKVAVLAIELGMLEEALILYRQCKRY--------DLLNKLYQSQGMWSEAFEIAETKDRI--HLRNTYYNYAKYLEA 870 (1416)
T ss_pred chhhHHHHHHHHHhhHHHHHHHHHHHHHH--------HHHHHHHHhcccHHHHHHHHhhccce--ehhhhHHHHHHHHHh
Confidence 33344566677788888888888876543 34556778888888888776643222 225678999999999
Q ss_pred cCCHHHHHHHHHhhcCCCChH---HHHHHHHHHHH----------HHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 005108 323 LGQVENARRHLCLSGQQADPT---EVHRLQVVEKH----------LSKCTDARKVGDWKSALREGDAAIAAGADFSPQLS 389 (714)
Q Consensus 323 ~g~~~~A~~~~~~al~~~~~~---~~~~l~~~~~~----------~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~ 389 (714)
.++.+.|+++|+++-...-.- .......++.+ .--+..+...|+.+.|+.+|..+-. |
T Consensus 871 r~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~ 941 (1416)
T KOG3617|consen 871 RRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------Y 941 (1416)
T ss_pred hccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------h
Confidence 999999999999875310000 00001111111 1123344556777777777765432 3
Q ss_pred HHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhcc------
Q 005108 390 MCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQI------ 463 (714)
Q Consensus 390 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------ 463 (714)
+.+..+.+-+|+.++|..+.++. . +-.+.|.+|..|...|++.+|+..|.+|-..
T Consensus 942 fs~VrI~C~qGk~~kAa~iA~es-----g--------------d~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRl 1002 (1416)
T KOG3617|consen 942 FSMVRIKCIQGKTDKAARIAEES-----G--------------DKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRL 1002 (1416)
T ss_pred hhheeeEeeccCchHHHHHHHhc-----c--------------cHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666667777766655432 1 2456788999999999999999998876432
Q ss_pred CCCC--HHHHHHHHhH------HHHHHHH--------HHHhHHhhCcCHHHHHHHHHH-----hhc-----cCC-CCHHH
Q 005108 464 DPRN--VEVAVLLNNV------KLVARAR--------ARGNDLFKSERFTEACQAYGE-----GLR-----FDP-SNSVL 516 (714)
Q Consensus 464 ~p~~--~~~~~~l~~l------~~~~~~~--------~~g~~~~~~g~~~~A~~~~~~-----al~-----~~p-~~~~~ 516 (714)
-.+| .+-+..+..+ ..+.+++ .-...|.+.|.+.+|++.-=+ +|+ +++ .++.+
T Consensus 1003 cKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~l 1082 (1416)
T KOG3617|consen 1003 CKENDMKDRLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKL 1082 (1416)
T ss_pred HHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHH
Confidence 1111 1111111111 1111111 112344555666555543211 111 233 36888
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHH------HHHhC----------------CC---------CHHHHHHHHHHHHHhccHH
Q 005108 517 YCNRAACWFKLGQWERSVEDSNQ------ALLIQ----------------PN---------YTKALLRRAASNSKLEKWA 565 (714)
Q Consensus 517 ~~~la~~~~~~g~~~~A~~~~~~------al~~~----------------p~---------~~~~~~~la~~~~~~g~~~ 565 (714)
+..-+..+....+|++|+..+-. |+++. |. -.+++..+|.++.++|.|.
T Consensus 1083 l~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh 1162 (1416)
T KOG3617|consen 1083 LRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYH 1162 (1416)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchH
Confidence 88888999999999999877644 44331 11 1267888999999999999
Q ss_pred HHHHHHHHH
Q 005108 566 DAVRDFEVL 574 (714)
Q Consensus 566 eA~~~~~~a 574 (714)
.|-+-|.+|
T Consensus 1163 ~AtKKfTQA 1171 (1416)
T KOG3617|consen 1163 AATKKFTQA 1171 (1416)
T ss_pred HHHHHHhhh
Confidence 998887664
|
|
| >PTZ00102 disulphide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.4e-09 Score=120.50 Aligned_cols=95 Identities=20% Similarity=0.287 Sum_probs=84.7
Q ss_pred hhhHHhhhccCCCceEEEeecCCCccccccchHHHHHHhhC----CCcEEEEEecccCcchhhhCCccccceEEEEeCCe
Q 005108 617 SLEQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRY----PSINFLKVDIDESPGVAHAENVRIVPTFKIYKNGS 692 (714)
Q Consensus 617 ~~e~~~~~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~----~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~ 692 (714)
+...|...+.....++|.||++||++|+++.|.+.++...+ +++.|+.||+++..+++++|+|.++||+++|++|+
T Consensus 38 ~~~~f~~~i~~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~ 117 (477)
T PTZ00102 38 TDSTFDKFITENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEMELAQEFGVRGYPTIKFFNKGN 117 (477)
T ss_pred chhhHHHHHhcCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHHHHHhcCCCcccEEEEEECCc
Confidence 34577777777789999999999999999999998887654 35999999999999999999999999999999999
Q ss_pred EEEEEcCC-CHHHHHHHHhhh
Q 005108 693 RMKEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 693 ~~~~~~g~-~~~~l~~~~~~~ 712 (714)
.+ ++.|. +.+.|.++|.++
T Consensus 118 ~~-~y~g~~~~~~l~~~l~~~ 137 (477)
T PTZ00102 118 PV-NYSGGRTADGIVSWIKKL 137 (477)
T ss_pred eE-EecCCCCHHHHHHHHHHh
Confidence 88 88898 999999999875
|
|
| >cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain | Back alignment and domain information |
|---|
Probab=98.96 E-value=6.3e-10 Score=96.56 Aligned_cols=81 Identities=15% Similarity=0.141 Sum_probs=64.3
Q ss_pred HHhhhccCCCceEEEeecCCCccccccchHHHHHHhhC-CCcEEEEEecccCc-chhhhCCccc--cceEEEE-eCCeEE
Q 005108 620 QFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRY-PSINFLKVDIDESP-GVAHAENVRI--VPTFKIY-KNGSRM 694 (714)
Q Consensus 620 ~~~~~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~-~~~~~~~vd~d~~~-~l~~~~~v~~--~Pt~~~~-~~G~~~ 694 (714)
.+..+.....+++|+||++||++|+.+.|.+.+..... ....|+.||++..+ .+...|++.+ +||+++| ++|+++
T Consensus 11 al~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~~g~~vPt~~f~~~~Gk~~ 90 (117)
T cd02959 11 GIKEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKDEEFSPDGGYIPRILFLDPSGDVH 90 (117)
T ss_pred HHHHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchhhhcccCCCccceEEEECCCCCCc
Confidence 34445556779999999999999999999998876544 24578888888765 4567899987 9999999 699998
Q ss_pred EEEcCC
Q 005108 695 KEIVCP 700 (714)
Q Consensus 695 ~~~~g~ 700 (714)
.++++.
T Consensus 91 ~~~~~~ 96 (117)
T cd02959 91 PEIINK 96 (117)
T ss_pred hhhccC
Confidence 865544
|
Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney. |
| >TIGR02740 TraF-like TraF-like protein | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.7e-08 Score=99.58 Aligned_cols=84 Identities=21% Similarity=0.292 Sum_probs=70.3
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccC-----------cchhhhCCccccceEEEEeC-CeEEE
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDES-----------PGVAHAENVRIVPTFKIYKN-GSRMK 695 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~-----------~~l~~~~~v~~~Pt~~~~~~-G~~~~ 695 (714)
...++|+||++||++|+.+.|.|+.+..+|. +.++.|++|.. ..+++.|+|..+|++++++. |+.+.
T Consensus 166 ~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg-~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~~~~~~v~ 244 (271)
T TIGR02740 166 KKSGLFFFFKSDCPYCHQQAPILQAFEDRYG-IEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLADPDPNQFT 244 (271)
T ss_pred CCeEEEEEECCCCccHHHHhHHHHHHHHHcC-cEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEECCCCEEE
Confidence 4589999999999999999999999999985 77778887763 46889999999999999954 66665
Q ss_pred E-EcCC-CHHHHHHHHhhh
Q 005108 696 E-IVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 696 ~-~~g~-~~~~l~~~~~~~ 712 (714)
. ..|. +.++|.+.|...
T Consensus 245 ~v~~G~~s~~eL~~~i~~~ 263 (271)
T TIGR02740 245 PIGFGVMSADELVDRILLA 263 (271)
T ss_pred EEEeCCCCHHHHHHHHHHH
Confidence 4 4588 999999888754
|
This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.95 E-value=8.5e-09 Score=85.67 Aligned_cols=99 Identities=29% Similarity=0.542 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHH
Q 005108 436 TFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSV 515 (714)
Q Consensus 436 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~ 515 (714)
+++.+|.++...|++++|+..++++++..|.+..++..+ |.++...+++++|+++|+++++..|.+..
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 69 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNL------------AAAYYKLGKYEEALEDYEKALELDPDNAK 69 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHhCCCcchh
Confidence 478899999999999999999999999999988776655 99999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Q 005108 516 LYCNRAACWFKLGQWERSVEDSNQALLIQPN 546 (714)
Q Consensus 516 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 546 (714)
.+..+|.++...|++++|...++++++..|+
T Consensus 70 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 70 AYYNLGLAYYKLGKYEEALEAYEKALELDPN 100 (100)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHccCCC
Confidence 9999999999999999999999999988773
|
|
| >PLN02309 5'-adenylylsulfate reductase | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.9e-09 Score=114.31 Aligned_cols=95 Identities=14% Similarity=0.131 Sum_probs=78.6
Q ss_pred hhHHhhhc---cCCCceEEEeecCCCccccccchHHHHHHhhCC--CcEEEEEecc-cCcchhh-hCCccccceEEEEeC
Q 005108 618 LEQFRAAV---SLPGVSVVHFKSASNLHCKQISPYVETLCGRYP--SINFLKVDID-ESPGVAH-AENVRIVPTFKIYKN 690 (714)
Q Consensus 618 ~e~~~~~i---~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~--~~~~~~vd~d-~~~~l~~-~~~v~~~Pt~~~~~~ 690 (714)
.++|+..+ ...++++|+||++||++|+.+.|.++++..++. ++.|++||++ ...+++. .|+|.++|||++|++
T Consensus 352 ~~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~la~~~~~I~~~PTil~f~~ 431 (457)
T PLN02309 352 RAGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGSFPTILLFPK 431 (457)
T ss_pred HHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchHHHHhhCCCceeeEEEEEeC
Confidence 35666554 457799999999999999999999999999985 4999999999 7777886 699999999999988
Q ss_pred CeEE-EEEc-CC-CHHHHHHHHhhh
Q 005108 691 GSRM-KEIV-CP-SRDMLEHSVRHY 712 (714)
Q Consensus 691 G~~~-~~~~-g~-~~~~l~~~~~~~ 712 (714)
|... ..+. |. +.+.|..||+.+
T Consensus 432 g~~~~v~Y~~~~R~~~~L~~fv~~~ 456 (457)
T PLN02309 432 NSSRPIKYPSEKRDVDSLLSFVNSL 456 (457)
T ss_pred CCCCeeecCCCCcCHHHHHHHHHHh
Confidence 8643 3454 34 999999999865
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.94 E-value=3.2e-06 Score=82.94 Aligned_cols=91 Identities=25% Similarity=0.381 Sum_probs=46.4
Q ss_pred HhhCcCHHHHHHHHHHhhccCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHH
Q 005108 490 LFKSERFTEACQAYGEGLRFDPS-NSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAV 568 (714)
Q Consensus 490 ~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~ 568 (714)
+...+++++|+..+.+++...+. ....+..++.++...+++++|+..+.+++...|.....+..++..+...++++++.
T Consensus 177 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (291)
T COG0457 177 LEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEAL 256 (291)
T ss_pred HHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHH
Confidence 44445555555555555555544 34555555555555555555555555555555544444444444444444455555
Q ss_pred HHHHHHHHhCCC
Q 005108 569 RDFEVLRRELPD 580 (714)
Q Consensus 569 ~~~~~al~~~p~ 580 (714)
..+.++++..|.
T Consensus 257 ~~~~~~~~~~~~ 268 (291)
T COG0457 257 EALEKALELDPD 268 (291)
T ss_pred HHHHHHHHhCcc
Confidence 555555555544
|
|
| >cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides | Back alignment and domain information |
|---|
Probab=98.94 E-value=3.2e-09 Score=86.87 Aligned_cols=73 Identities=14% Similarity=0.167 Sum_probs=65.2
Q ss_pred CceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCcchhhhCCccccceEEEEeCCeEEEEEcCC-CHHHH
Q 005108 629 GVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKEIVCP-SRDML 705 (714)
Q Consensus 629 ~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~~~~g~-~~~~l 705 (714)
.+.+..|+++||+.|....+.++++...++++.|..+|+++.+++++.|+|+++|++++ ||+.+.+ |. +.+++
T Consensus 13 pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~~~~e~a~~~~V~~vPt~vi--dG~~~~~--G~~~~~e~ 86 (89)
T cd03026 13 PINFETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMIDGALFQDEVEERGIMSVPAIFL--NGELFGF--GRMTLEEI 86 (89)
T ss_pred CEEEEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEEEhHhCHHHHHHcCCccCCEEEE--CCEEEEe--CCCCHHHH
Confidence 36688899999999999999999999999999999999999999999999999999964 9987774 75 66654
|
AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain. |
| >cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO) | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.3e-09 Score=83.25 Aligned_cols=62 Identities=24% Similarity=0.310 Sum_probs=56.0
Q ss_pred eEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCcchhhhCCccccceEEEEeCCeEE
Q 005108 631 SVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRM 694 (714)
Q Consensus 631 ~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~ 694 (714)
.++.|+++||++|+.+.+.++++...++++.|..+|+++.++++..|+|.++||+++ +|+.+
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~id~~~~~~l~~~~~i~~vPti~i--~~~~~ 63 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNPNISAEMIDAAEFPDLADEYGVMSVPAIVI--NGKVE 63 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCceEEEEEEcccCHhHHHHcCCcccCEEEE--CCEEE
Confidence 467899999999999999999998888889999999999999999999999999865 66544
|
All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri |
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.94 E-value=3e-07 Score=104.73 Aligned_cols=237 Identities=15% Similarity=0.062 Sum_probs=194.2
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCc----HHHHHHHHHHHHHcCCHHHHHHH
Q 005108 258 FGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRL-DPNY----WRAHQRLGSLLVRLGQVENARRH 332 (714)
Q Consensus 258 ~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~----~~a~~~la~~~~~~g~~~~A~~~ 332 (714)
-.+-.+.|++.+.-+|+....|...-.-++++++.++|.+.+++|+.. ++.. ...|..+-++...-|.-+.-.+.
T Consensus 1440 ~pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kV 1519 (1710)
T KOG1070|consen 1440 APESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKV 1519 (1710)
T ss_pred CCcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHH
Confidence 334567788999999999999999999999999999999999999873 3332 44565555666666777778888
Q ss_pred HHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHhhcc
Q 005108 333 LCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNI 412 (714)
Q Consensus 333 ~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 412 (714)
|++|.+..++. ..|..+..+|...+.+++|.++|+.+++..- .....|..++..++++.+-+.|...+.+|
T Consensus 1520 FeRAcqycd~~--------~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~-q~~~vW~~y~~fLl~~ne~~aa~~lL~rA 1590 (1710)
T KOG1070|consen 1520 FERACQYCDAY--------TVHLKLLGIYEKSEKNDEADELLRLMLKKFG-QTRKVWIMYADFLLRQNEAEAARELLKRA 1590 (1710)
T ss_pred HHHHHHhcchH--------HHHHHHHHHHHHhhcchhHHHHHHHHHHHhc-chhhHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 98887655544 3466777889999999999999999999876 46778888999999999999999999999
Q ss_pred ccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhh
Q 005108 413 PKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFK 492 (714)
Q Consensus 413 l~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~ 492 (714)
++.-|.. .-.......|++.++.|+.+.+..+|+..+..+|.-.+.|..+ ...-.+
T Consensus 1591 L~~lPk~------------eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VY------------id~eik 1646 (1710)
T KOG1070|consen 1591 LKSLPKQ------------EHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVY------------IDMEIK 1646 (1710)
T ss_pred Hhhcchh------------hhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHH------------HHHHHc
Confidence 9998884 1155677789999999999999999999999999999999988 778899
Q ss_pred CcCHHHHHHHHHHhhcc--CCCCHHHHHHHHHHHHHh
Q 005108 493 SERFTEACQAYGEGLRF--DPSNSVLYCNRAACWFKL 527 (714)
Q Consensus 493 ~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~ 527 (714)
.|+.+.+..+|++++.+ .+.....++..=.-|.+.
T Consensus 1647 ~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~ 1683 (1710)
T KOG1070|consen 1647 HGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKS 1683 (1710)
T ss_pred cCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHh
Confidence 99999999999999876 455555555555445443
|
|
| >KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.4e-09 Score=103.48 Aligned_cols=99 Identities=18% Similarity=0.237 Sum_probs=80.0
Q ss_pred eehhhhHHhhhccCCCceEEEeecCCCccccccchHHHHHHhhCCC----cEEEEEecccCcchhhhCCccccceEEEEe
Q 005108 614 EVSSLEQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYPS----INFLKVDIDESPGVAHAENVRIVPTFKIYK 689 (714)
Q Consensus 614 ~i~~~e~~~~~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~----~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~ 689 (714)
.+..++.......+.++++|+|+|+||.+|+++.|+.+++--.+.+ +++.+.|...-+.+|..|+|+++||++++|
T Consensus 29 ~VeDLddkFkdnkdddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefgiqGYPTIk~~k 108 (468)
T KOG4277|consen 29 AVEDLDDKFKDNKDDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFGIQGYPTIKFFK 108 (468)
T ss_pred hhhhhhHHhhhcccCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchhhHhhhccCCCceEEEec
Confidence 3344443333445678999999999999999999999998766643 778899999999999999999999999999
Q ss_pred CCeEEEEEcCCCHHHHHHHHhhh
Q 005108 690 NGSRMKEIVCPSRDMLEHSVRHY 712 (714)
Q Consensus 690 ~G~~~~~~~g~~~~~l~~~~~~~ 712 (714)
+|..++-..|..++.|.++-.+.
T Consensus 109 gd~a~dYRG~R~Kd~iieFAhR~ 131 (468)
T KOG4277|consen 109 GDHAIDYRGGREKDAIIEFAHRC 131 (468)
T ss_pred CCeeeecCCCccHHHHHHHHHhc
Confidence 99976654444999888876654
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.94 E-value=3.3e-09 Score=81.87 Aligned_cols=64 Identities=17% Similarity=0.244 Sum_probs=37.3
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCH
Q 005108 519 NRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDN 582 (714)
Q Consensus 519 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~ 582 (714)
.+|..+++.|++++|+..|+++++.+|++..+++.+|.++..+|++++|+.+|+++++.+|+++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 3555566666666666666666666666666666666666666666666666666666666543
|
|
| >PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.3e-09 Score=115.30 Aligned_cols=85 Identities=18% Similarity=0.200 Sum_probs=72.6
Q ss_pred CCCceEEEeecCCCccccccchHHHHHHhhCC--CcEEEEE----------------------------ecccCcchhhh
Q 005108 627 LPGVSVVHFKSASNLHCKQISPYVETLCGRYP--SINFLKV----------------------------DIDESPGVAHA 676 (714)
Q Consensus 627 ~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~--~~~~~~v----------------------------d~d~~~~l~~~ 676 (714)
..++++|+|||+||++|+...|.|+++..++. ++.|+.| ++|....+++.
T Consensus 55 kGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~~~lak~ 134 (521)
T PRK14018 55 KDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNGGTLAQS 134 (521)
T ss_pred CCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHHhCCCcccceeccccHHHHHH
Confidence 56789999999999999999999999999875 4666544 33445678899
Q ss_pred CCccccceEEEE-eCCeEEEEEcCC-CHHHHHHHHhh
Q 005108 677 ENVRIVPTFKIY-KNGSRMKEIVCP-SRDMLEHSVRH 711 (714)
Q Consensus 677 ~~v~~~Pt~~~~-~~G~~~~~~~g~-~~~~l~~~~~~ 711 (714)
|+|+++||++|+ ++|+++.++.|. +.++|+.+|+.
T Consensus 135 fgV~giPTt~IIDkdGkIV~~~~G~~~~eeL~a~Ie~ 171 (521)
T PRK14018 135 LNISVYPSWAIIGKDGDVQRIVKGSISEAQALALIRN 171 (521)
T ss_pred cCCCCcCeEEEEcCCCeEEEEEeCCCCHHHHHHHHHH
Confidence 999999998655 999999999999 99999999884
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.93 E-value=4e-08 Score=89.51 Aligned_cols=129 Identities=15% Similarity=0.109 Sum_probs=104.8
Q ss_pred HHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCC---
Q 005108 437 FFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSN--- 513 (714)
Q Consensus 437 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~--- 513 (714)
.+..+......++...+...+++.+...|+........ ..+|.+++..|++++|+..|++++...|+.
T Consensus 14 ~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~---------l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~ 84 (145)
T PF09976_consen 14 LYEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAA---------LQLAKAAYEQGDYDEAKAALEKALANAPDPELK 84 (145)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHH---------HHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHH
Confidence 33444444468999999999999999999884332222 135999999999999999999999987655
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 005108 514 SVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLR 575 (714)
Q Consensus 514 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al 575 (714)
..+.+.+|.++...|++++|+..++.. .-.+-.+.++..+|.+|...|++++|+..|++++
T Consensus 85 ~~a~l~LA~~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 85 PLARLRLARILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 467888999999999999999999773 3344456788899999999999999999999875
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.5e-08 Score=99.29 Aligned_cols=104 Identities=11% Similarity=0.064 Sum_probs=93.4
Q ss_pred HhHH-hhCcCHHHHHHHHHHhhccCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHH
Q 005108 487 GNDL-FKSERFTEACQAYGEGLRFDPSN---SVLYCNRAACWFKLGQWERSVEDSNQALLIQPNY---TKALLRRAASNS 559 (714)
Q Consensus 487 g~~~-~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~ 559 (714)
+..+ ++.|+|++|+..|++.++..|++ +.+++.+|.+|+..|++++|+..|+++++..|++ +++++.+|.++.
T Consensus 149 A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~ 228 (263)
T PRK10803 149 AIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQ 228 (263)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHH
Confidence 5554 66799999999999999999988 5899999999999999999999999999988874 689999999999
Q ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 005108 560 KLEKWADAVRDFEVLRRELPDDNEIAESLFH 590 (714)
Q Consensus 560 ~~g~~~eA~~~~~~al~~~p~~~~~~~~L~~ 590 (714)
.+|++++|+..|+++++.+|+.........+
T Consensus 229 ~~g~~~~A~~~~~~vi~~yP~s~~a~~A~~r 259 (263)
T PRK10803 229 DKGDTAKAKAVYQQVIKKYPGTDGAKQAQKR 259 (263)
T ss_pred HcCCHHHHHHHHHHHHHHCcCCHHHHHHHHH
Confidence 9999999999999999999998876554433
|
|
| >PTZ00102 disulphide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.9e-09 Score=118.10 Aligned_cols=96 Identities=17% Similarity=0.157 Sum_probs=83.5
Q ss_pred hhHHhhh-ccCCCceEEEeecCCCccccccchHHHHHHhhCC---CcEEEEEecccCcchhhhCCccccceEEEEeCCeE
Q 005108 618 LEQFRAA-VSLPGVSVVHFKSASNLHCKQISPYVETLCGRYP---SINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSR 693 (714)
Q Consensus 618 ~e~~~~~-i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~---~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~ 693 (714)
...|... +..++.++|.||++||++|+.+.|.++++...+. .+.++++|++.+..++..|+|+++||+++|++|+.
T Consensus 364 ~~~f~~~v~~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~~~~~~~~v~~~Pt~~~~~~~~~ 443 (477)
T PTZ00102 364 GNTFEEIVFKSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANETPLEEFSWSAFPTILFVKAGER 443 (477)
T ss_pred ccchHHHHhcCCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCccchhcCCCcccCeEEEEECCCc
Confidence 3556665 4566789999999999999999999999988875 38899999999999999999999999999988876
Q ss_pred E-EEEcCC-CHHHHHHHHhhhc
Q 005108 694 M-KEIVCP-SRDMLEHSVRHYS 713 (714)
Q Consensus 694 ~-~~~~g~-~~~~l~~~~~~~~ 713 (714)
+ .++.|. +.+.|.++|+++.
T Consensus 444 ~~~~~~G~~~~~~l~~~i~~~~ 465 (477)
T PTZ00102 444 TPIPYEGERTVEGFKEFVNKHA 465 (477)
T ss_pred ceeEecCcCCHHHHHHHHHHcC
Confidence 6 478898 9999999998864
|
|
| >PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.6e-09 Score=120.32 Aligned_cols=100 Identities=12% Similarity=0.244 Sum_probs=81.7
Q ss_pred eehhhhHHhhhc----cCCCceEEEeecCCCccccccchHH---HHHHhhCCCcEEEEEecccC----cchhhhCCcccc
Q 005108 614 EVSSLEQFRAAV----SLPGVSVVHFKSASNLHCKQISPYV---ETLCGRYPSINFLKVDIDES----PGVAHAENVRIV 682 (714)
Q Consensus 614 ~i~~~e~~~~~i----~~~~~~vv~f~a~~c~~C~~~~p~l---~~l~~~~~~~~~~~vd~d~~----~~l~~~~~v~~~ 682 (714)
.+.+.+++++.+ ..+++++|+||++||++|+.+.+.+ .++.+++.++.++++|++++ .+++++|+|.++
T Consensus 456 ~i~s~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~~~~~v~vDvt~~~~~~~~l~~~~~v~g~ 535 (571)
T PRK00293 456 RIKTVAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALADTVLLQADVTANNAEDVALLKHYNVLGL 535 (571)
T ss_pred ecCCHHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhcCCEEEEEECCCCChhhHHHHHHcCCCCC
Confidence 344555555544 3357899999999999999998865 66777778899999999863 578999999999
Q ss_pred ceEEEE-eCCeEE--EEEcCC-CHHHHHHHHhhhc
Q 005108 683 PTFKIY-KNGSRM--KEIVCP-SRDMLEHSVRHYS 713 (714)
Q Consensus 683 Pt~~~~-~~G~~~--~~~~g~-~~~~l~~~~~~~~ 713 (714)
||+++| +||+++ .++.|. +.+++.+.|+++.
T Consensus 536 Pt~~~~~~~G~~i~~~r~~G~~~~~~f~~~L~~~~ 570 (571)
T PRK00293 536 PTILFFDAQGQEIPDARVTGFMDAAAFAAHLRQLQ 570 (571)
T ss_pred CEEEEECCCCCCcccccccCCCCHHHHHHHHHHhc
Confidence 999999 589984 688998 9999999998763
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.7e-08 Score=103.03 Aligned_cols=213 Identities=15% Similarity=0.105 Sum_probs=151.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC--C----c
Q 005108 242 AEELKRMGNELYRKGCFGEALSMYDKAISLAP--RN----AAFRSNRAAALTGLGRIGEAVKECEEAVRLDP--N----Y 309 (714)
Q Consensus 242 ~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p--~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~----~ 309 (714)
++.+...|+.|...++|++|.++|.++.+..- ++ ...+...+.+|.+. ++++|+.+|++++.+.- + -
T Consensus 35 a~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~a 113 (282)
T PF14938_consen 35 ADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQA 113 (282)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHH
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 46778889999999999999999999977532 12 45666677777666 99999999999998631 1 2
Q ss_pred HHHHHHHHHHHHHc-CCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCC----
Q 005108 310 WRAHQRLGSLLVRL-GQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADF---- 384 (714)
Q Consensus 310 ~~a~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~---- 384 (714)
...+..+|.+|... |++++|+++|++++....... ........+...+.++...++|++|++.|+++....-+.
T Consensus 114 A~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~ 192 (282)
T PF14938_consen 114 AKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLK 192 (282)
T ss_dssp HHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTG
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccc
Confidence 66889999999998 999999999999987222221 122344566778888999999999999999998864321
Q ss_pred --CHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHH--hCcHHHHHHHHHHH
Q 005108 385 --SPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMA--LGRFENAVTAAEKA 460 (714)
Q Consensus 385 --~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~a 460 (714)
...++...+.|++..|++..|...+++....+|....+.. ......+...+.. ...+++|+..|++.
T Consensus 193 ~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E---------~~~~~~l~~A~~~~D~e~f~~av~~~d~~ 263 (282)
T PF14938_consen 193 YSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSRE---------YKFLEDLLEAYEEGDVEAFTEAVAEYDSI 263 (282)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHH---------HHHHHHHHHHHHTT-CCCHHHHCHHHTTS
T ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHH---------HHHHHHHHHHHHhCCHHHHHHHHHHHccc
Confidence 1245566788999999999999999999999987633322 3333333344333 45688888888887
Q ss_pred hccCC
Q 005108 461 GQIDP 465 (714)
Q Consensus 461 l~~~p 465 (714)
..+++
T Consensus 264 ~~ld~ 268 (282)
T PF14938_consen 264 SRLDN 268 (282)
T ss_dssp S---H
T ss_pred CccHH
Confidence 77665
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.1e-06 Score=84.25 Aligned_cols=255 Identities=26% Similarity=0.306 Sum_probs=198.7
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHhcCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC
Q 005108 262 LSMYDKAISLAPRNAAFRSNRAAALTG-LGRIGEAVKECEEAVRLDPN--YWRAHQRLGSLLVRLGQVENARRHLCLSGQ 338 (714)
Q Consensus 262 l~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~--~~~a~~~la~~~~~~g~~~~A~~~~~~al~ 338 (714)
.....................+..... .+.+..+...+..++...+. .......++..+...+++..+...+.....
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (291)
T COG0457 8 LAILLEALAKLLAEALALLEAGLALLELLGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALE 87 (291)
T ss_pred HHHHhHHHHhChhhHHHHHHhhhhhhHHHhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 334444444444444444444444444 57888999999999988876 478889999999999999999999988764
Q ss_pred CCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH-HHHHcCCHHHHHHHhhccccCCC
Q 005108 339 QADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVE-ALLKLHQLEDAESSLSNIPKIEP 417 (714)
Q Consensus 339 ~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~p 417 (714)
. .........+...+..+...+++..++..+.+++...+.... ....... ++...+++++|...+.+++...+
T Consensus 88 ~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 161 (291)
T COG0457 88 L-----ELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDL-AEALLALGALYELGDYEEALELYEKALELDP 161 (291)
T ss_pred h-----hhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcch-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 3 112233356677788888999999999999999998776422 2222444 89999999999999999988666
Q ss_pred C-CCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCC-CHHHHHHHHhHHHHHHHHHHHhHHhhCcC
Q 005108 418 S-TVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPR-NVEVAVLLNNVKLVARARARGNDLFKSER 495 (714)
Q Consensus 418 ~-~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~l~~~~~~~~~g~~~~~~g~ 495 (714)
. . .....+...+..+...+++++|+..+.+++...+. ....+..+ +..+...++
T Consensus 162 ~~~------------~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~ 217 (291)
T COG0457 162 ELN------------ELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNL------------GLLYLKLGK 217 (291)
T ss_pred Ccc------------chHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHh------------hHHHHHccc
Confidence 3 1 12566777777788899999999999999999998 46655544 888999999
Q ss_pred HHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Q 005108 496 FTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPN 546 (714)
Q Consensus 496 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 546 (714)
+++|+..+.+++...|.....+..++..+...++++++...+.++++..|.
T Consensus 218 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 218 YEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 999999999999999987788888888888888899999999999999887
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.91 E-value=2e-08 Score=98.23 Aligned_cols=122 Identities=21% Similarity=0.227 Sum_probs=107.9
Q ss_pred CHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHH
Q 005108 401 QLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLV 480 (714)
Q Consensus 401 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~ 480 (714)
+.++.+.-++.-+..+|++ +.-|..+|.+|+.+|+++.|...|.+++++.|++++.+..+
T Consensus 137 ~~~~l~a~Le~~L~~nP~d--------------~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~------ 196 (287)
T COG4235 137 EMEALIARLETHLQQNPGD--------------AEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGL------ 196 (287)
T ss_pred cHHHHHHHHHHHHHhCCCC--------------chhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHH------
Confidence 3556666777788889998 88999999999999999999999999999999999999877
Q ss_pred HHHHHHHhHHhhC---cCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH
Q 005108 481 ARARARGNDLFKS---ERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYT 548 (714)
Q Consensus 481 ~~~~~~g~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 548 (714)
|.+++.+ ..-.++...|+++++.+|.+..+.+.||..+++.|+|.+|+..++.+++..|.+.
T Consensus 197 ------aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 197 ------AEALYYQAGQQMTAKARALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred ------HHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 5555543 3456899999999999999999999999999999999999999999999877654
|
|
| >PRK15412 thiol:disulfide interchange protein DsbE; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=4.6e-09 Score=99.79 Aligned_cols=84 Identities=11% Similarity=0.115 Sum_probs=68.9
Q ss_pred CCCceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCc-----------------------chhhhCCccccc
Q 005108 627 LPGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESP-----------------------GVAHAENVRIVP 683 (714)
Q Consensus 627 ~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~-----------------------~l~~~~~v~~~P 683 (714)
..++++++||++||++|+...|.++++..+ ++.++.|++++.+ .++..|+|.++|
T Consensus 67 ~gk~vvv~FwatwC~~C~~e~p~l~~l~~~--~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~P 144 (185)
T PRK15412 67 QGKPVLLNVWATWCPTCRAEHQYLNQLSAQ--GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYGAP 144 (185)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHc--CCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCCCcCC
Confidence 456899999999999999999999998754 6788888765422 245578999999
Q ss_pred eEEEE-eCCeEEEEEcCC-CHHHHHHHHhhh
Q 005108 684 TFKIY-KNGSRMKEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 684 t~~~~-~~G~~~~~~~g~-~~~~l~~~~~~~ 712 (714)
+.+++ ++|+++.+..|. +.+.|+..|+.+
T Consensus 145 ~t~vid~~G~i~~~~~G~~~~~~l~~~i~~~ 175 (185)
T PRK15412 145 ETFLIDGNGIIRYRHAGDLNPRVWESEIKPL 175 (185)
T ss_pred eEEEECCCceEEEEEecCCCHHHHHHHHHHH
Confidence 76555 899999999999 999888888764
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.90 E-value=4.2e-09 Score=81.28 Aligned_cols=65 Identities=28% Similarity=0.415 Sum_probs=59.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcH
Q 005108 246 KRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYW 310 (714)
Q Consensus 246 ~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 310 (714)
+.+|..++..|+|++|+.+|+++++.+|++..+++.+|.++..+|++++|+..|+++++.+|+++
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 45889999999999999999999999999999999999999999999999999999999999864
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.1e-07 Score=86.60 Aligned_cols=94 Identities=23% Similarity=0.154 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc---HHHHHH
Q 005108 242 AEELKRMGNELYRKGCFGEALSMYDKAISLAPRN---AAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNY---WRAHQR 315 (714)
Q Consensus 242 ~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~ 315 (714)
+...+......+..++...+...+++.++.+|+. ..+.+.+|.+++..|++++|+..|+.++...|+. ..+.+.
T Consensus 11 a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~ 90 (145)
T PF09976_consen 11 ASALYEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLR 90 (145)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHH
Confidence 3445556666667999999999999999999988 6678889999999999999999999999877654 457888
Q ss_pred HHHHHHHcCCHHHHHHHHHh
Q 005108 316 LGSLLVRLGQVENARRHLCL 335 (714)
Q Consensus 316 la~~~~~~g~~~~A~~~~~~ 335 (714)
++.++...|++++|+..++.
T Consensus 91 LA~~~~~~~~~d~Al~~L~~ 110 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQ 110 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHh
Confidence 99999999999999988855
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.1e-08 Score=89.69 Aligned_cols=105 Identities=18% Similarity=0.145 Sum_probs=99.6
Q ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 005108 237 ICGGDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRL 316 (714)
Q Consensus 237 ~~p~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l 316 (714)
+.++.-+..+..|..++..|++++|..+|.-....+|.+.+.|..||.|+..+++|++|+..|..+..++++++...+..
T Consensus 32 is~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~a 111 (165)
T PRK15331 32 IPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFT 111 (165)
T ss_pred CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchH
Confidence 56677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHhhcCCCC
Q 005108 317 GSLLVRLGQVENARRHLCLSGQQAD 341 (714)
Q Consensus 317 a~~~~~~g~~~~A~~~~~~al~~~~ 341 (714)
|.||..+|+.+.|+..|+.++....
T Consensus 112 gqC~l~l~~~~~A~~~f~~a~~~~~ 136 (165)
T PRK15331 112 GQCQLLMRKAAKARQCFELVNERTE 136 (165)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhCcc
Confidence 9999999999999999999987433
|
|
| >PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin | Back alignment and domain information |
|---|
Probab=98.87 E-value=3.2e-08 Score=97.90 Aligned_cols=103 Identities=28% Similarity=0.454 Sum_probs=82.2
Q ss_pred cceeeehhhhHHhhhccC---CCceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCcchhhhCCccccceEE
Q 005108 610 GEVEEVSSLEQFRAAVSL---PGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAHAENVRIVPTFK 686 (714)
Q Consensus 610 ~~~~~i~~~e~~~~~i~~---~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~ 686 (714)
+.+..+...+.|..++.. ...+||+||.+.++.|..+...|..|+.+||.++|++|..+..+ +...|.+..+||++
T Consensus 125 G~v~ei~~~e~~l~~ie~~~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~vKFvkI~a~~~~-~~~~f~~~~LPtll 203 (265)
T PF02114_consen 125 GEVYEIDSGEEFLDAIEKESKSTWVVVHIYEPGFPRCEIMNSCLECLARKYPEVKFVKIRASKCP-ASENFPDKNLPTLL 203 (265)
T ss_dssp -SEEE--SHHHHHHHCCTSSTT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TTSEEEEEEECGCC-TTTTS-TTC-SEEE
T ss_pred ceEEEccChhhHHHHHhccCCCcEEEEEEEeCCCchHHHHHHHHHHHHHhCCceEEEEEehhccC-cccCCcccCCCEEE
Confidence 356667777778777754 23689999999999999999999999999999999999998877 78899999999999
Q ss_pred EEeCCeEEEEEcCC--------CHHHHHHHHhhhc
Q 005108 687 IYKNGSRMKEIVCP--------SRDMLEHSVRHYS 713 (714)
Q Consensus 687 ~~~~G~~~~~~~g~--------~~~~l~~~~~~~~ 713 (714)
+|++|..+..++|+ +.+.|+.+|.+++
T Consensus 204 vYk~G~l~~~~V~l~~~~g~df~~~dlE~~L~~~G 238 (265)
T PF02114_consen 204 VYKNGDLIGNFVGLTDLLGDDFFTEDLEAFLIEYG 238 (265)
T ss_dssp EEETTEEEEEECTGGGCT-TT--HHHHHHHHHTTT
T ss_pred EEECCEEEEeEEehHHhcCCCCCHHHHHHHHHHcC
Confidence 99999999998876 3357888888776
|
Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B. |
| >KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.1e-09 Score=102.90 Aligned_cols=93 Identities=23% Similarity=0.372 Sum_probs=82.4
Q ss_pred hHHhhhccCCCceEEEeecCCCccccccchHHHHHHhh----CCC--cEEEEEecccCcchhhhCCccccceEEEEeCCe
Q 005108 619 EQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGR----YPS--INFLKVDIDESPGVAHAENVRIVPTFKIYKNGS 692 (714)
Q Consensus 619 e~~~~~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~----~~~--~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~ 692 (714)
+++..++....+++|.|+|.||+..+++.|++++.+.. +|+ +.+.+||++....++.+|.|..+||+.+++||.
T Consensus 4 ~N~~~il~s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I~KyPTlKvfrnG~ 83 (375)
T KOG0912|consen 4 ENIDSILDSNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHINKYPTLKVFRNGE 83 (375)
T ss_pred ccHHHhhccceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhccccCceeeeeeccc
Confidence 35566777788999999999999999999999887665 464 778899999999999999999999999999999
Q ss_pred EEE-EEcCC-CHHHHHHHHhh
Q 005108 693 RMK-EIVCP-SRDMLEHSVRH 711 (714)
Q Consensus 693 ~~~-~~~g~-~~~~l~~~~~~ 711 (714)
.+. ++.|. +.+.|.++|++
T Consensus 84 ~~~rEYRg~RsVeaL~efi~k 104 (375)
T KOG0912|consen 84 MMKREYRGQRSVEALIEFIEK 104 (375)
T ss_pred hhhhhhccchhHHHHHHHHHH
Confidence 998 68888 99999999876
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=5.3e-08 Score=106.64 Aligned_cols=131 Identities=15% Similarity=0.153 Sum_probs=107.3
Q ss_pred HHHHHHHcCC---HHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHh--------CcHHHHHHHHHHH
Q 005108 392 RVEALLKLHQ---LEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMAL--------GRFENAVTAAEKA 460 (714)
Q Consensus 392 la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~--------g~~~~A~~~~~~a 460 (714)
.|..|...+. +++|+.+|+++++++|++ +.+|-.++.++... .+..++.+..+++
T Consensus 345 rg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~--------------a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 345 QAHHYLNSGDAKSLNKASDLLEEILKSEPDF--------------TYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHhCCCc--------------HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 5555555444 779999999999999998 77777777766553 2345666777776
Q ss_pred hcc--CCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHH
Q 005108 461 GQI--DPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSN 538 (714)
Q Consensus 461 l~~--~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 538 (714)
+.+ ++.++.++..+ |..+...|++++|...|++++.++| +..+|..+|.++...|++++|++.|+
T Consensus 411 ~al~~~~~~~~~~~al------------a~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~ 477 (517)
T PRK10153 411 VALPELNVLPRIYEIL------------AVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYS 477 (517)
T ss_pred hhcccCcCChHHHHHH------------HHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 664 67777777655 7778889999999999999999999 58899999999999999999999999
Q ss_pred HHHHhCCCCHH
Q 005108 539 QALLIQPNYTK 549 (714)
Q Consensus 539 ~al~~~p~~~~ 549 (714)
+|++++|.++.
T Consensus 478 ~A~~L~P~~pt 488 (517)
T PRK10153 478 TAFNLRPGENT 488 (517)
T ss_pred HHHhcCCCCch
Confidence 99999999874
|
|
| >TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily | Back alignment and domain information |
|---|
Probab=98.84 E-value=9.8e-09 Score=96.48 Aligned_cols=84 Identities=14% Similarity=0.173 Sum_probs=68.6
Q ss_pred CCCceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEec-----------------------ccCcchhhhCCccccc
Q 005108 627 LPGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDI-----------------------DESPGVAHAENVRIVP 683 (714)
Q Consensus 627 ~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~-----------------------d~~~~l~~~~~v~~~P 683 (714)
..++++++||++||++|+...|.++++..+ ++.++.|+. |....+++.|+|.++|
T Consensus 62 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~--~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v~~~P 139 (173)
T TIGR00385 62 QGKPVLLNVWASWCPPCRAEHPYLNELAKD--GLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLGVYGAP 139 (173)
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHc--CCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcCCeeCC
Confidence 456899999999999999999999998764 355555554 3344677899999999
Q ss_pred eEEEE-eCCeEEEEEcCC-CHHHHHHHHhhh
Q 005108 684 TFKIY-KNGSRMKEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 684 t~~~~-~~G~~~~~~~g~-~~~~l~~~~~~~ 712 (714)
+++++ ++|+++.+..|. +.+++++.|..+
T Consensus 140 ~~~~id~~G~i~~~~~G~~~~~~l~~~l~~~ 170 (173)
T TIGR00385 140 ETFLVDGNGVILYRHAGPLNNEVWTEGFLPA 170 (173)
T ss_pred eEEEEcCCceEEEEEeccCCHHHHHHHHHHH
Confidence 65555 899999999998 999999988775
|
Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=8.7e-08 Score=99.45 Aligned_cols=146 Identities=14% Similarity=-0.010 Sum_probs=120.5
Q ss_pred HHHHHHHHHHHhC---cHHHHHHHHHHHh---ccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhcc
Q 005108 436 TFFVRAQIEMALG---RFENAVTAAEKAG---QIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRF 509 (714)
Q Consensus 436 ~~~~la~~~~~~g---~~~~A~~~~~~al---~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~ 509 (714)
.++.+|...+..+ ..+.|+.+|.+++ +++|+...++..+..+.....+. |..- ......+|....++++++
T Consensus 257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~--g~~~-~~~~~~~a~~~A~rAvel 333 (458)
T PRK11906 257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALH--GKSE-LELAAQKALELLDYVSDI 333 (458)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHh--cCCC-chHHHHHHHHHHHHHHhc
Confidence 4466666665554 3678999999999 99999999888773332211111 1111 345667899999999999
Q ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHH
Q 005108 510 DPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEI 584 (714)
Q Consensus 510 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~ 584 (714)
+|.|+.++..+|.++...++++.|+..|++|+.++|+.+.+++..|.+....|+.++|++.++++++++|.-..+
T Consensus 334 d~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~ 408 (458)
T PRK11906 334 TTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKA 408 (458)
T ss_pred CCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999976543
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.83 E-value=8.5e-08 Score=86.89 Aligned_cols=117 Identities=18% Similarity=0.203 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCC
Q 005108 434 AYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSN 513 (714)
Q Consensus 434 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~ 513 (714)
+..+..-|.-++..|+|++|..-|..||.+-|....-...+ .+.++|.+++++++++.|+..+.++|+++|.+
T Consensus 95 ad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsI-------ly~Nraaa~iKl~k~e~aI~dcsKaiel~pty 167 (271)
T KOG4234|consen 95 ADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSI-------LYSNRAAALIKLRKWESAIEDCSKAIELNPTY 167 (271)
T ss_pred HHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHH-------HHhhhHHHHHHhhhHHHHHHHHHhhHhcCchh
Confidence 44566778899999999999999999999988765422211 23467999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005108 514 SVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAAS 557 (714)
Q Consensus 514 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 557 (714)
..++..+|.+|.++..|++|++.|+++++++|...++.-..+.+
T Consensus 168 ~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl 211 (271)
T KOG4234|consen 168 EKALERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIARL 211 (271)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhc
Confidence 99999999999999999999999999999999876555444433
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.83 E-value=4.1e-06 Score=92.22 Aligned_cols=291 Identities=14% Similarity=0.042 Sum_probs=190.7
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHH
Q 005108 251 ELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVRLGQVENAR 330 (714)
Q Consensus 251 ~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~ 330 (714)
-....++|.+|+..+.+.++..|+...+....|..+.++|+.++|..+++..-...+++...+..+-.+|..++++++|.
T Consensus 18 d~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~ 97 (932)
T KOG2053|consen 18 DLLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAV 97 (932)
T ss_pred HHhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHH
Confidence 35577899999999999999999999999999999999999999998888877778888899999999999999999999
Q ss_pred HHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH------
Q 005108 331 RHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLED------ 404 (714)
Q Consensus 331 ~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~------ 404 (714)
.+|+++++..+.. +..+.+-.+|.+.+.|.+-.+.--+..+..|.....+|..+..++......++
T Consensus 98 ~~Ye~~~~~~P~e--------ell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~ 169 (932)
T KOG2053|consen 98 HLYERANQKYPSE--------ELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPIL 169 (932)
T ss_pred HHHHHHHhhCCcH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchh
Confidence 9999999744432 12333344466667776666555556667777666666655555554444333
Q ss_pred ---HHHHhhccccCC-CCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHH-HhccCCCCHHHHHHHHhHHH
Q 005108 405 ---AESSLSNIPKIE-PSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEK-AGQIDPRNVEVAVLLNNVKL 479 (714)
Q Consensus 405 ---A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~-al~~~p~~~~~~~~l~~l~~ 479 (714)
|...+++.++.. +-. . .+.+ ...-.++..+|++++|.+.+.. ..+..+.........
T Consensus 170 l~LA~~m~~~~l~~~gk~~----------s--~aE~-~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~----- 231 (932)
T KOG2053|consen 170 LALAEKMVQKLLEKKGKIE----------S--EAEI-ILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENK----- 231 (932)
T ss_pred HHHHHHHHHHHhccCCccc----------h--HHHH-HHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHH-----
Confidence 444555555544 111 1 1221 2223566778999999999943 333333333222221
Q ss_pred HHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHH-------------HHHHHHHhCCHHHHHHHHHHHHHhCCC
Q 005108 480 VARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCN-------------RAACWFKLGQWERSVEDSNQALLIQPN 546 (714)
Q Consensus 480 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~-------------la~~~~~~g~~~~A~~~~~~al~~~p~ 546 (714)
....+...++|.+-.+...+++...+++..+|.. .+..+...+..+..++..++.+.....
T Consensus 232 ------~~dllk~l~~w~~l~~l~~~Ll~k~~Ddy~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~R 305 (932)
T KOG2053|consen 232 ------KLDLLKLLNRWQELFELSSRLLEKGNDDYKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSR 305 (932)
T ss_pred ------HHHHHHHhcChHHHHHHHHHHHHhCCcchHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhccccc
Confidence 2666778888888888888888888877322222 112222334455555555555544222
Q ss_pred CH-HHHHHHHHHHHHhccHHHHHHHHHH
Q 005108 547 YT-KALLRRAASNSKLEKWADAVRDFEV 573 (714)
Q Consensus 547 ~~-~~~~~la~~~~~~g~~~eA~~~~~~ 573 (714)
.+ -+++.+-.-+...|+.+++.-.|-+
T Consensus 306 gp~LA~lel~kr~~~~gd~ee~~~~y~~ 333 (932)
T KOG2053|consen 306 GPYLARLELDKRYKLIGDSEEMLSYYFK 333 (932)
T ss_pred CcHHHHHHHHHHhcccCChHHHHHHHHH
Confidence 22 3333343344566888887665544
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.6e-07 Score=97.48 Aligned_cols=149 Identities=13% Similarity=0.120 Sum_probs=125.2
Q ss_pred HHHHHHHhhccc---cCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHh---------CcHHHHHHHHHHHhccCCCCHH
Q 005108 402 LEDAESSLSNIP---KIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMAL---------GRFENAVTAAEKAGQIDPRNVE 469 (714)
Q Consensus 402 ~~~A~~~~~~al---~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~~~~ 469 (714)
.+.|+.+|.+++ +++|.. +.+|..++.+++.. ....+|.++.+++++++|.++.
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~--------------a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~ 339 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLK--------------TECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGK 339 (458)
T ss_pred HHHHHHHHHHHhhcccCCccc--------------HHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHH
Confidence 457888888999 888887 66777777777654 3467899999999999999999
Q ss_pred HHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHH
Q 005108 470 VAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTK 549 (714)
Q Consensus 470 ~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 549 (714)
++..+ |.++...++++.|+..|++++.++|+.+.+|+..|.+....|+.++|++.++++++++|.-..
T Consensus 340 a~~~~------------g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~ 407 (458)
T PRK11906 340 ILAIM------------GLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRK 407 (458)
T ss_pred HHHHH------------HHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhH
Confidence 98877 888999999999999999999999999999999999999999999999999999999998765
Q ss_pred HHHHHHHH-HHHhccHHHHHHHHHHHHH
Q 005108 550 ALLRRAAS-NSKLEKWADAVRDFEVLRR 576 (714)
Q Consensus 550 ~~~~la~~-~~~~g~~~eA~~~~~~al~ 576 (714)
+-...-.+ .+-....++|+..|-+--+
T Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (458)
T PRK11906 408 AVVIKECVDMYVPNPLKNNIKLYYKETE 435 (458)
T ss_pred HHHHHHHHHHHcCCchhhhHHHHhhccc
Confidence 55444444 4445677888888765443
|
|
| >cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif | Back alignment and domain information |
|---|
Probab=98.82 E-value=5e-09 Score=91.17 Aligned_cols=82 Identities=13% Similarity=0.059 Sum_probs=65.5
Q ss_pred hHHhhhccCCCceEEEeecCCCccccccchHH--H-HHHhhC-CCcEEEEEecccCcchhh--------hCCccccceEE
Q 005108 619 EQFRAAVSLPGVSVVHFKSASNLHCKQISPYV--E-TLCGRY-PSINFLKVDIDESPGVAH--------AENVRIVPTFK 686 (714)
Q Consensus 619 e~~~~~i~~~~~~vv~f~a~~c~~C~~~~p~l--~-~l~~~~-~~~~~~~vd~d~~~~l~~--------~~~v~~~Pt~~ 686 (714)
+.+..+...+++++++|++.||+.|+.+.+.+ + ++...+ .++.+++||+++.+++++ .|++.++|+++
T Consensus 6 eal~~Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt~v 85 (124)
T cd02955 6 EAFEKARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPLNV 85 (124)
T ss_pred HHHHHHHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCEEE
Confidence 44566667788999999999999999997622 2 344443 468899999999888865 35899999999
Q ss_pred EE-eCCeEEEEEcCC
Q 005108 687 IY-KNGSRMKEIVCP 700 (714)
Q Consensus 687 ~~-~~G~~~~~~~g~ 700 (714)
|+ .+|+++.+..++
T Consensus 86 fl~~~G~~~~~~~~~ 100 (124)
T cd02955 86 FLTPDLKPFFGGTYF 100 (124)
T ss_pred EECCCCCEEeeeeec
Confidence 99 999999887766
|
The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation. |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.81 E-value=3.2e-06 Score=91.51 Aligned_cols=294 Identities=14% Similarity=0.081 Sum_probs=183.1
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH------------HHHHhcCCCcHHHHHHHHHH
Q 005108 252 LYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKEC------------EEAVRLDPNYWRAHQRLGSL 319 (714)
Q Consensus 252 ~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~------------~~al~~~p~~~~a~~~la~~ 319 (714)
|...|+.+.|.+..+-+ ....+|-++|....+..+.+-|.-++ +++.+ +++ +.-...|.+
T Consensus 738 yvtiG~MD~AfksI~~I-----kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q-~~~--e~eakvAvL 809 (1416)
T KOG3617|consen 738 YVTIGSMDAAFKSIQFI-----KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQ-NGE--EDEAKVAVL 809 (1416)
T ss_pred EEEeccHHHHHHHHHHH-----hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHh-CCc--chhhHHHHH
Confidence 44678888887766544 24468888888888877776665544 33332 333 333456777
Q ss_pred HHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 005108 320 LVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKL 399 (714)
Q Consensus 320 ~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~ 399 (714)
...+|..++|+..|.+.- .+--+-..|...|.|++|++..+.--.+ .....|++.|.-+...
T Consensus 810 AieLgMlEeA~~lYr~ck---------------R~DLlNKlyQs~g~w~eA~eiAE~~DRi---HLr~Tyy~yA~~Lear 871 (1416)
T KOG3617|consen 810 AIELGMLEEALILYRQCK---------------RYDLLNKLYQSQGMWSEAFEIAETKDRI---HLRNTYYNYAKYLEAR 871 (1416)
T ss_pred HHHHhhHHHHHHHHHHHH---------------HHHHHHHHHHhcccHHHHHHHHhhccce---ehhhhHHHHHHHHHhh
Confidence 888999999999997762 1111223377889999998876643332 2345567788889999
Q ss_pred CCHHHHHHHhhccc----------cCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCC----
Q 005108 400 HQLEDAESSLSNIP----------KIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDP---- 465 (714)
Q Consensus 400 g~~~~A~~~~~~al----------~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---- 465 (714)
++.+.|+++|+++- ..+|.. ..++.....+...|...|+.+...|+.+.|+.+|..|-....
T Consensus 872 ~Di~~AleyyEK~~~hafev~rmL~e~p~~----~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI 947 (1416)
T KOG3617|consen 872 RDIEAALEYYEKAGVHAFEVFRMLKEYPKQ----IEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRI 947 (1416)
T ss_pred ccHHHHHHHHHhcCChHHHHHHHHHhChHH----HHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheee
Confidence 99999999999863 222222 122222334455677789999999999999999998754221
Q ss_pred -----CCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhc------cCCCC---HHH-----------HHHH
Q 005108 466 -----RNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLR------FDPSN---SVL-----------YCNR 520 (714)
Q Consensus 466 -----~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~------~~p~~---~~~-----------~~~l 520 (714)
+-..+-..-..-......+.+|..|...|++.+|+..|.+|-. +...| ..+ ....
T Consensus 948 ~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~a 1027 (1416)
T KOG3617|consen 948 KCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSA 1027 (1416)
T ss_pred EeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHH
Confidence 1111111111112223344568999999999999998876543 32222 011 1112
Q ss_pred HHHHHHhC-CHHHHHHHHHHH------HH-----------------hCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 005108 521 AACWFKLG-QWERSVEDSNQA------LL-----------------IQP-NYTKALLRRAASNSKLEKWADAVRDFEVLR 575 (714)
Q Consensus 521 a~~~~~~g-~~~~A~~~~~~a------l~-----------------~~p-~~~~~~~~la~~~~~~g~~~eA~~~~~~al 575 (714)
|..|...| +...|+..|.+| ++ ++| .++..+.+.+..+....+|++|+.++-.+.
T Consensus 1028 ArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar 1107 (1416)
T KOG3617|consen 1028 ARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAR 1107 (1416)
T ss_pred HHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 33344444 555555554432 11 233 367788888899999999999988765543
|
|
| >cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif | Back alignment and domain information |
|---|
Probab=98.80 E-value=1e-08 Score=91.23 Aligned_cols=77 Identities=14% Similarity=0.160 Sum_probs=63.1
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEe-----------------------cccCcchhhhCCccccce
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVD-----------------------IDESPGVAHAENVRIVPT 684 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd-----------------------~d~~~~l~~~~~v~~~Pt 684 (714)
.++++++||+.||+.|+...|.++++..++ ++.++.|+ +|....+++.|+|..+|+
T Consensus 25 gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~-~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~v~~~P~ 103 (127)
T cd03010 25 GKPYLLNVWASWCAPCREEHPVLMALARQG-RVPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGIDLGVYGVPE 103 (127)
T ss_pred CCEEEEEEEcCcCHHHHHHHHHHHHHHHhc-CcEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHHhcCCCCCCe
Confidence 568999999999999999999999998876 36666555 344567788999999996
Q ss_pred EEEE-eCCeEEEEEcCC-CHHHH
Q 005108 685 FKIY-KNGSRMKEIVCP-SRDML 705 (714)
Q Consensus 685 ~~~~-~~G~~~~~~~g~-~~~~l 705 (714)
.+++ ++|+++.+..|. +.+.|
T Consensus 104 ~~~ld~~G~v~~~~~G~~~~~~~ 126 (127)
T cd03010 104 TFLIDGDGIIRYKHVGPLTPEVW 126 (127)
T ss_pred EEEECCCceEEEEEeccCChHhc
Confidence 5555 899999999998 76654
|
Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c. |
| >PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A | Back alignment and domain information |
|---|
Probab=98.80 E-value=4.9e-09 Score=90.99 Aligned_cols=83 Identities=22% Similarity=0.176 Sum_probs=64.6
Q ss_pred CCCceEEEeecCCCccccccchHHHHH---HhhCC-CcEEEEEecccC--------------------cchhhhCCcccc
Q 005108 627 LPGVSVVHFKSASNLHCKQISPYVETL---CGRYP-SINFLKVDIDES--------------------PGVAHAENVRIV 682 (714)
Q Consensus 627 ~~~~~vv~f~a~~c~~C~~~~p~l~~l---~~~~~-~~~~~~vd~d~~--------------------~~l~~~~~v~~~ 682 (714)
+....++.|+++||+.|+.+.+.+... ...+. ++.++.++++.. .++++.|+|.++
T Consensus 4 ~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~gt 83 (112)
T PF13098_consen 4 NGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVNGT 83 (112)
T ss_dssp TSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--SS
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCCcc
Confidence 456889999999999999999988854 33332 578888888763 358999999999
Q ss_pred ceEEEE-eCCeEEEEEcCC-CHHHHHHHH
Q 005108 683 PTFKIY-KNGSRMKEIVCP-SRDMLEHSV 709 (714)
Q Consensus 683 Pt~~~~-~~G~~~~~~~g~-~~~~l~~~~ 709 (714)
||++++ ++|+++.++.|. +.++|.+.|
T Consensus 84 Pt~~~~d~~G~~v~~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 84 PTIVFLDKDGKIVYRIPGYLSPEELLKML 112 (112)
T ss_dssp SEEEECTTTSCEEEEEESS--HHHHHHHH
T ss_pred CEEEEEcCCCCEEEEecCCCCHHHHHhhC
Confidence 999999 699999999999 999998765
|
... |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.3e-07 Score=85.27 Aligned_cols=192 Identities=14% Similarity=0.041 Sum_probs=140.3
Q ss_pred HHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhh
Q 005108 352 EKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGML 431 (714)
Q Consensus 352 ~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 431 (714)
..++.++..|...|-+.-|.--|.+++.+.|+ .+.+++.+|..+...|+++.|.+.|+..++++|.+
T Consensus 66 ~l~fERGvlYDSlGL~~LAR~DftQaLai~P~-m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y------------ 132 (297)
T COG4785 66 QLLFERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY------------ 132 (297)
T ss_pred HHHHHhcchhhhhhHHHHHhhhhhhhhhcCCC-cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcc------------
Confidence 44666777788999999999999999999998 57778889999999999999999999999999998
Q ss_pred hhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHH--HHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHH-Hhhc
Q 005108 432 SEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVE--VAVLLNNVKLVARARARGNDLFKSERFTEACQAYG-EGLR 508 (714)
Q Consensus 432 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~--~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~-~al~ 508 (714)
-++..++|..++.-|++.-|.+.+.+..+.+|+++- .|..+ -...-+..+|...+. ++..
T Consensus 133 --~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl---------------~E~k~dP~~A~tnL~qR~~~ 195 (297)
T COG4785 133 --NYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYL---------------NEQKLDPKQAKTNLKQRAEK 195 (297)
T ss_pred --hHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHH---------------HHhhCCHHHHHHHHHHHHHh
Confidence 789999999999999999999999999999999874 33322 122345666665543 4443
Q ss_pred cCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-------CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Q 005108 509 FDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPN-------YTKALLRRAASNSKLEKWADAVRDFEVLRREL 578 (714)
Q Consensus 509 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-------~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 578 (714)
.+ +...-|+.... .+|+..+ ...++++..-..+ -.++++.+|..+...|+.++|...|+-++..+
T Consensus 196 ~d-~e~WG~~iV~~---yLgkiS~-e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 196 SD-KEQWGWNIVEF---YLGKISE-ETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred cc-HhhhhHHHHHH---HHhhccH-HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 33 22222222221 2232211 1122222222222 24788999999999999999999999888654
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.5e-07 Score=98.44 Aligned_cols=124 Identities=21% Similarity=0.238 Sum_probs=110.2
Q ss_pred HHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHH
Q 005108 437 FFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVL 516 (714)
Q Consensus 437 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 516 (714)
--.+..++...++++.|+++|++..+.+|+ +...+ +.++...++..+|++.+.++++..|.+..+
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~pe---v~~~L------------A~v~l~~~~E~~AI~ll~~aL~~~p~d~~L 236 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERDPE---VAVLL------------ARVYLLMNEEVEAIRLLNEALKENPQDSEL 236 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcCCc---HHHHH------------HHHHHhcCcHHHHHHHHHHHHHhCCCCHHH
Confidence 334456666778999999999999998876 33333 788888999999999999999999999999
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 005108 517 YCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLR 575 (714)
Q Consensus 517 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al 575 (714)
+...+..+.+.++++.|++..++++++.|++...|+.|+.+|..+|++++|+..++.+=
T Consensus 237 L~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 237 LNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 99999999999999999999999999999999999999999999999999998776543
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors | Back alignment and domain information |
|---|
Probab=98.78 E-value=8.9e-09 Score=92.09 Aligned_cols=69 Identities=17% Similarity=0.352 Sum_probs=57.2
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhCC---------CcEEEEEecccC-------------------------cch
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRYP---------SINFLKVDIDES-------------------------PGV 673 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~---------~~~~~~vd~d~~-------------------------~~l 673 (714)
.++++++|||+||++|++..|.|.++..++. ++.++.|+.|+. ..+
T Consensus 25 gk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~~l 104 (146)
T cd03008 25 NRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRREL 104 (146)
T ss_pred CCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHHHH
Confidence 5699999999999999999999999876442 478888887751 146
Q ss_pred hhhCCccccceEEEE-eCCeEEEE
Q 005108 674 AHAENVRIVPTFKIY-KNGSRMKE 696 (714)
Q Consensus 674 ~~~~~v~~~Pt~~~~-~~G~~~~~ 696 (714)
+..|+|.++|+++++ ++|+++.+
T Consensus 105 ~~~y~v~~iPt~vlId~~G~Vv~~ 128 (146)
T cd03008 105 EAQFSVEELPTVVVLKPDGDVLAA 128 (146)
T ss_pred HHHcCCCCCCEEEEECCCCcEEee
Confidence 779999999998888 89998875
|
RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity. |
| >PRK13728 conjugal transfer protein TrbB; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.4e-08 Score=92.00 Aligned_cols=80 Identities=15% Similarity=0.135 Sum_probs=66.4
Q ss_pred EEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccC-------------cchhhhCCc--cccceEEEE-eCCeEE-
Q 005108 632 VVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDES-------------PGVAHAENV--RIVPTFKIY-KNGSRM- 694 (714)
Q Consensus 632 vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~-------------~~l~~~~~v--~~~Pt~~~~-~~G~~~- 694 (714)
+|.||+.||++|++..|.++++.++|. +.++-|++|+. ..+...|++ ..+|+.+++ ++|+++
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~g-~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~i~~ 151 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQYG-FSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTLEAL 151 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHcC-CEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCcEEE
Confidence 778999999999999999999999984 77877777753 125568885 699988777 999987
Q ss_pred EEEcCC-CHHHHHHHHhhh
Q 005108 695 KEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 695 ~~~~g~-~~~~l~~~~~~~ 712 (714)
...+|. +.++|++.|+.+
T Consensus 152 ~~~~G~~~~~~L~~~I~~l 170 (181)
T PRK13728 152 PLLQGATDAAGFMARMDTV 170 (181)
T ss_pred EEEECCCCHHHHHHHHHHH
Confidence 578899 999998888764
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.76 E-value=2e-05 Score=74.88 Aligned_cols=233 Identities=18% Similarity=0.181 Sum_probs=163.3
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc-------------------HHHHHHHHHHHHHcCCHHHHHHHHHh
Q 005108 275 NAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNY-------------------WRAHQRLGSLLVRLGQVENARRHLCL 335 (714)
Q Consensus 275 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------------------~~a~~~la~~~~~~g~~~~A~~~~~~ 335 (714)
...+|..+-.++.++..+++|...+...-++|..+ .......|.+....|+..+.+.-+..
T Consensus 68 ~lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnpqesLdRl~~ 147 (366)
T KOG2796|consen 68 SLQLWTVRLALLVKLRLFQNAEMELEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLHK 147 (366)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHhhhhhhccCCCcceeeeeccccCCCCcCccccHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 35678888889999999999998888776665221 11233445566666776666554433
Q ss_pred hcCCCChHHHHHHHHHHHHHHHhHHHHHcCCH-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHhhcccc
Q 005108 336 SGQQADPTEVHRLQVVEKHLSKCTDARKVGDW-KSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPK 414 (714)
Q Consensus 336 al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~-~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 414 (714)
. ..+......-.+.+.. +..++.+++-+. .+.++++.++.-.++|.-.+..++++++
T Consensus 148 L---------------~~~V~~ii~~~e~~~~~ESsv~lW~KRl~-------~Vmy~~~~~llG~kEy~iS~d~~~~vi~ 205 (366)
T KOG2796|consen 148 L---------------KTVVSKILANLEQGLAEESSIRLWRKRLG-------RVMYSMANCLLGMKEYVLSVDAYHSVIK 205 (366)
T ss_pred H---------------HHHHHHHHHHHHhccchhhHHHHHHHHHH-------HHHHHHHHHHhcchhhhhhHHHHHHHHH
Confidence 2 1222221112223332 455555555443 3456688999999999999999999999
Q ss_pred CCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCc
Q 005108 415 IEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSE 494 (714)
Q Consensus 415 ~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g 494 (714)
.+|.. +......++.+.++.|+.+.|..+|++.-+....-.... ......++.+.++.-.+
T Consensus 206 ~~~e~-------------~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q------~~~~V~~n~a~i~lg~n 266 (366)
T KOG2796|consen 206 YYPEQ-------------EPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQ------GKIMVLMNSAFLHLGQN 266 (366)
T ss_pred hCCcc-------------cHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccc------hhHHHHhhhhhheeccc
Confidence 88553 266788899999999999999999986543211100000 01112335588888999
Q ss_pred CHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH
Q 005108 495 RFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYT 548 (714)
Q Consensus 495 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 548 (714)
+|.+|...|.+++..+|.++.+.++.|.|+..+|+..+|++.++.+++..|...
T Consensus 267 n~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 267 NFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHY 320 (366)
T ss_pred chHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence 999999999999999999999999999999999999999999999999988743
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=98.76 E-value=2e-07 Score=80.46 Aligned_cols=95 Identities=24% Similarity=0.192 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC---cHHHHHHH
Q 005108 243 EELKRMGNELYRKGCFGEALSMYDKAISLAPRN---AAFRSNRAAALTGLGRIGEAVKECEEAVRLDPN---YWRAHQRL 316 (714)
Q Consensus 243 ~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~a~~~l 316 (714)
.+++.+|..+-..|+.++|+.+|++++...... ..+++.+|..+..+|++++|+..+++++...|+ +......+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 568889999999999999999999999976544 678999999999999999999999999999888 77888889
Q ss_pred HHHHHHcCCHHHHHHHHHhhc
Q 005108 317 GSLLVRLGQVENARRHLCLSG 337 (714)
Q Consensus 317 a~~~~~~g~~~~A~~~~~~al 337 (714)
+.++...|++++|+..+..++
T Consensus 82 Al~L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 82 ALALYNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHHHHHCCCHHHHHHHHHHHH
Confidence 999999999999999886554
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.3e-07 Score=98.84 Aligned_cols=122 Identities=16% Similarity=0.274 Sum_probs=108.3
Q ss_pred HHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHH
Q 005108 391 CRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEV 470 (714)
Q Consensus 391 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 470 (714)
.+...+...++++.|+..++++.+.+|+. ...++.++...++..+|+..++++++..|.+.+.
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~pev-----------------~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~L 236 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERDPEV-----------------AVLLARVYLLMNEEVEAIRLLNEALKENPQDSEL 236 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcCCcH-----------------HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHH
Confidence 35666777889999999999999988763 5568999999999999999999999999999777
Q ss_pred HHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 005108 471 AVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQAL 541 (714)
Q Consensus 471 ~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 541 (714)
+... +..+...++++.|+++.+++++..|++...|+.|+.+|.++|++++|+..++.+-
T Consensus 237 L~~Q------------a~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 237 LNLQ------------AEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHH------------HHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 7654 8889999999999999999999999999999999999999999999998887543
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=98.74 E-value=3.6e-08 Score=76.82 Aligned_cols=68 Identities=26% Similarity=0.356 Sum_probs=62.5
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 005108 252 LYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSL 319 (714)
Q Consensus 252 ~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~ 319 (714)
++..|+|++|+..|++++..+|++..+++.+|.+|+..|++++|...+++++..+|++..++..++.+
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~i 68 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQI 68 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhcC
Confidence 46789999999999999999999999999999999999999999999999999999998888777753
|
... |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.74 E-value=3.4e-06 Score=81.02 Aligned_cols=173 Identities=14% Similarity=0.136 Sum_probs=115.0
Q ss_pred HHHHHHhHHHHHcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhh
Q 005108 352 EKHLSKCTDARKVGDWKSALREGDAAIAAGA--DFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFG 429 (714)
Q Consensus 352 ~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 429 (714)
..++..+....+.|+|++|+..|+++....| .........++.++++.+++++|+..+++.+.+.|.++.
T Consensus 35 ~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n-------- 106 (254)
T COG4105 35 SELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPN-------- 106 (254)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC--------
Confidence 4567777778899999999999999999988 345778888999999999999999999999999999853
Q ss_pred hhhhHHHHHHHHHHHHHh--------CcHHHHHHHHHHHhccCCCCHHHHHH-----HHhHHHHHHHHHHHhHHhhCcCH
Q 005108 430 MLSEAYTFFVRAQIEMAL--------GRFENAVTAAEKAGQIDPRNVEVAVL-----LNNVKLVARARARGNDLFKSERF 496 (714)
Q Consensus 430 ~~~~~~~~~~la~~~~~~--------g~~~~A~~~~~~al~~~p~~~~~~~~-----l~~l~~~~~~~~~g~~~~~~g~~ 496 (714)
..++++..|.+++.. .-..+|+..|+..+...|+..-+-.. ..+...+..-...|..|.+.|.|
T Consensus 107 ---~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~ 183 (254)
T COG4105 107 ---ADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAY 183 (254)
T ss_pred ---hhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCh
Confidence 366778888777653 23567888889999999987433221 11112222333344444455555
Q ss_pred HHHHHHHHHhhccCCCC---HHHHHHHHHHHHHhCCHHHHHH
Q 005108 497 TEACQAYGEGLRFDPSN---SVLYCNRAACWFKLGQWERSVE 535 (714)
Q Consensus 497 ~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~ 535 (714)
..|+.-++++++..|+. .+++..+..+|..+|-.++|.+
T Consensus 184 ~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~ 225 (254)
T COG4105 184 VAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKK 225 (254)
T ss_pred HHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHH
Confidence 55554444444443332 2333344444444444444433
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.74 E-value=6.2e-07 Score=82.49 Aligned_cols=31 Identities=13% Similarity=0.172 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Q 005108 514 SVLYCNRAACWFKLGQWERSVEDSNQALLIQ 544 (714)
Q Consensus 514 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 544 (714)
.+.|+.+|.-+...|+.++|...|+-++..+
T Consensus 237 TEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 237 TETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 4678889999999999999999998887643
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.4e-07 Score=92.36 Aligned_cols=106 Identities=14% Similarity=0.080 Sum_probs=92.8
Q ss_pred HHHHHHHHHHH-HHhCcHHHHHHHHHHHhccCCCCH---HHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhcc
Q 005108 434 AYTFFVRAQIE-MALGRFENAVTAAEKAGQIDPRNV---EVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRF 509 (714)
Q Consensus 434 ~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~p~~~---~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~ 509 (714)
...++..+..+ +..|+|++|+..|++.++..|+.. .+++.+ |.+|+..|++++|+..|+++++.
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~L------------G~~y~~~g~~~~A~~~f~~vv~~ 209 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWL------------GQLNYNKGKKDDAAYYFASVVKN 209 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHH
Confidence 45667777766 567999999999999999999984 566554 99999999999999999999988
Q ss_pred CCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHH
Q 005108 510 DPSN---SVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKAL 551 (714)
Q Consensus 510 ~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 551 (714)
.|++ +++++.+|.++..+|++++|+..|+++++..|+...+.
T Consensus 210 yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~ 254 (263)
T PRK10803 210 YPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAK 254 (263)
T ss_pred CCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHH
Confidence 8774 78999999999999999999999999999999987443
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.73 E-value=5e-05 Score=76.17 Aligned_cols=291 Identities=19% Similarity=0.120 Sum_probs=154.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc-HHHHHHHHHHHHHc
Q 005108 247 RMGNELYRKGCFGEALSMYDKAISLAPRN--AAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNY-WRAHQRLGSLLVRL 323 (714)
Q Consensus 247 ~~g~~~~~~g~~~~Al~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~a~~~la~~~~~~ 323 (714)
..|.+....|+-..|.+.-.++-++-..+ +-++..-++.-...|+++.|.+-|+.++. +|.. .-.+..|-.-..++
T Consensus 89 StGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr~ 167 (531)
T COG3898 89 STGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQRL 167 (531)
T ss_pred hhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHhc
Confidence 34555555666666666666665433333 33444446666666777777777776654 2321 11122222223456
Q ss_pred CCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcC---CCCC----HHHHHHHHHHH
Q 005108 324 GQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAG---ADFS----PQLSMCRVEAL 396 (714)
Q Consensus 324 g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~---p~~~----~~~~~~la~~~ 396 (714)
|..+.|+.+-+.+......-.|.....++. .+..|+|+.|++..+...... ++.. ..++...+...
T Consensus 168 GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~-------r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ 240 (531)
T COG3898 168 GAREAARHYAERAAEKAPQLPWAARATLEA-------RCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSL 240 (531)
T ss_pred ccHHHHHHHHHHHHhhccCCchHHHHHHHH-------HHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHH
Confidence 677777766666655444433333333322 445677777777666544321 1110 11111112111
Q ss_pred HHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHh
Q 005108 397 LKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNN 476 (714)
Q Consensus 397 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 476 (714)
. .-+...|...-.++.++.|+. .-.-..-+..+++.|+..++-.+++.+-+.+|.. +++.
T Consensus 241 l-dadp~~Ar~~A~~a~KL~pdl--------------vPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP-~ia~---- 300 (531)
T COG3898 241 L-DADPASARDDALEANKLAPDL--------------VPAAVVAARALFRDGNLRKGSKILETAWKAEPHP-DIAL---- 300 (531)
T ss_pred h-cCChHHHHHHHHHHhhcCCcc--------------chHHHHHHHHHHhccchhhhhhHHHHHHhcCCCh-HHHH----
Confidence 1 224556666666666666665 3344455666677777777777777776666643 2222
Q ss_pred HHHHHHHHHHHhHHhhCcCHHHH-HHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 005108 477 VKLVARARARGNDLFKSERFTEA-CQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRA 555 (714)
Q Consensus 477 l~~~~~~~~~g~~~~~~g~~~~A-~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 555 (714)
..++.+.|+-... ++-.++...+.|++.+..+.++..-+..|++..|...-+.+....|.. .++..++
T Consensus 301 ----------lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pre-s~~lLlA 369 (531)
T COG3898 301 ----------LYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRE-SAYLLLA 369 (531)
T ss_pred ----------HHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchh-hHHHHHH
Confidence 1223333432211 122233334566677777777777777777777777777776666653 4555566
Q ss_pred HHHHHh-ccHHHHHHHHHHHHH
Q 005108 556 ASNSKL-EKWADAVRDFEVLRR 576 (714)
Q Consensus 556 ~~~~~~-g~~~eA~~~~~~al~ 576 (714)
.+-... |+-.+....+-++++
T Consensus 370 dIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 370 DIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred HHHhhccCchHHHHHHHHHHhc
Confidence 665443 666666666666665
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.71 E-value=5.7e-06 Score=78.95 Aligned_cols=231 Identities=18% Similarity=0.108 Sum_probs=161.4
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcHHHHHHHH
Q 005108 240 GDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRL--DPNYWRAHQRLG 317 (714)
Q Consensus 240 ~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~la 317 (714)
.+.+....+.+.|+..|.+..-+......- .....+...++..+..-++.++-+....+.+.. +..+...+..-|
T Consensus 39 ~~~e~d~y~~raylAlg~~~~~~~eI~~~~---~~~lqAvr~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa 115 (299)
T KOG3081|consen 39 TDVELDVYMYRAYLALGQYQIVISEIKEGK---ATPLQAVRLLAEYLELESNKKSILASLYELVADSTDGSNLIDLLLAA 115 (299)
T ss_pred chhHHHHHHHHHHHHccccccccccccccc---CChHHHHHHHHHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhh
Confidence 677788888999999999887666554432 122344555565555556655555555444432 223334555666
Q ss_pred HHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 005108 318 SLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALL 397 (714)
Q Consensus 318 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~ 397 (714)
.+|...+++++|++...... ..+....-..++.
T Consensus 116 ~i~~~~~~~deAl~~~~~~~-----------------------------------------------~lE~~Al~VqI~l 148 (299)
T KOG3081|consen 116 IIYMHDGDFDEALKALHLGE-----------------------------------------------NLEAAALNVQILL 148 (299)
T ss_pred HHhhcCCChHHHHHHHhccc-----------------------------------------------hHHHHHHHHHHHH
Confidence 77888888888888764421 1122233456778
Q ss_pred HcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHH----hCcHHHHHHHHHHHhccCCCCHHHHHH
Q 005108 398 KLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMA----LGRFENAVTAAEKAGQIDPRNVEVAVL 473 (714)
Q Consensus 398 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~ 473 (714)
++.+++-|.+.++++.+++.+. ++..+|..+.. -+++.+|.-+|++.-+..+..+.....
T Consensus 149 k~~r~d~A~~~lk~mq~ided~----------------tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG 212 (299)
T KOG3081|consen 149 KMHRFDLAEKELKKMQQIDEDA----------------TLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNG 212 (299)
T ss_pred HHHHHHHHHHHHHHHHccchHH----------------HHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHcc
Confidence 8888899999999888877664 34444444443 346889999999988866666655543
Q ss_pred HHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHH-HHHHHHHhCCCCH
Q 005108 474 LNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVE-DSNQALLIQPNYT 548 (714)
Q Consensus 474 l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~-~~~~al~~~p~~~ 548 (714)
. +.+...+++|++|...++.++..++++++.+.|+..+-..+|.-.++.. .+.+....+|+++
T Consensus 213 ~------------Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~ 276 (299)
T KOG3081|consen 213 Q------------AVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHP 276 (299)
T ss_pred H------------HHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcch
Confidence 3 8899999999999999999999999999999999999999998877665 4455556778775
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.70 E-value=5.6e-07 Score=75.78 Aligned_cols=97 Identities=24% Similarity=0.261 Sum_probs=88.5
Q ss_pred HHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHH
Q 005108 485 ARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYT----KALLRRAASNSK 560 (714)
Q Consensus 485 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~ 560 (714)
..|..+...|+.+.|++.|.+++.+.|..+.+|++++..+.-+|+.++|++.+++++++.-+.. .++...|.+|..
T Consensus 48 l~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl 127 (175)
T KOG4555|consen 48 LKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRL 127 (175)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHH
Confidence 3588899999999999999999999999999999999999999999999999999999865443 678999999999
Q ss_pred hccHHHHHHHHHHHHHhCCCC
Q 005108 561 LEKWADAVRDFEVLRRELPDD 581 (714)
Q Consensus 561 ~g~~~eA~~~~~~al~~~p~~ 581 (714)
+|+.+.|...|+.+-++....
T Consensus 128 ~g~dd~AR~DFe~AA~LGS~F 148 (175)
T KOG4555|consen 128 LGNDDAARADFEAAAQLGSKF 148 (175)
T ss_pred hCchHHHHHhHHHHHHhCCHH
Confidence 999999999999998886543
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.2e-07 Score=88.55 Aligned_cols=112 Identities=26% Similarity=0.448 Sum_probs=99.8
Q ss_pred HHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005108 481 ARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSK 560 (714)
Q Consensus 481 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 560 (714)
..+...|+.++...+|..|+.+|.++|.++|..+..|.+.+.|++++++|+.+...+.++++++|+...+++.+|.++..
T Consensus 11 ~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~ 90 (284)
T KOG4642|consen 11 EQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQ 90 (284)
T ss_pred HHHHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHh
Confidence 44556799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHH
Q 005108 561 LEKWADAVRDFEVLRREL-----PDDNEIAESLFHAQ 592 (714)
Q Consensus 561 ~g~~~eA~~~~~~al~~~-----p~~~~~~~~L~~~~ 592 (714)
...|++|+..++++..+. +.-.++...|..++
T Consensus 91 s~~~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak 127 (284)
T KOG4642|consen 91 SKGYDEAIKVLQRAYSLLREQPFTFGDDIPKALRDAK 127 (284)
T ss_pred hccccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHH
Confidence 999999999999997653 22345666666554
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.67 E-value=4.7e-06 Score=74.97 Aligned_cols=155 Identities=17% Similarity=0.162 Sum_probs=126.5
Q ss_pred HHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhc-cCCCCHHHH
Q 005108 393 VEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQ-IDPRNVEVA 471 (714)
Q Consensus 393 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~ 471 (714)
.....+.=+.+..+....+.++..|.. ...+.++..+.++|++.||...|++++. +.-+++..+
T Consensus 63 ~~a~~q~ldP~R~~Rea~~~~~~ApTv---------------qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~l 127 (251)
T COG4700 63 LMALQQKLDPERHLREATEELAIAPTV---------------QNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAML 127 (251)
T ss_pred HHHHHHhcChhHHHHHHHHHHhhchhH---------------HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHH
Confidence 334444455666666666666666663 4578899999999999999999999984 566777666
Q ss_pred HHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCC--CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHH
Q 005108 472 VLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPS--NSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTK 549 (714)
Q Consensus 472 ~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 549 (714)
..+ ++..+..+++..|...+++..+.+|. .+.....+|..|..+|++++|...|+.++...|+ +.
T Consensus 128 Lgl------------A~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ 194 (251)
T COG4700 128 LGL------------AQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQ 194 (251)
T ss_pred HHH------------HHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HH
Confidence 554 89999999999999999999999875 3778888999999999999999999999999987 67
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHH
Q 005108 550 ALLRRAASNSKLEKWADAVRDFEVLR 575 (714)
Q Consensus 550 ~~~~la~~~~~~g~~~eA~~~~~~al 575 (714)
+...++..+.++|+.++|...|....
T Consensus 195 ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 195 ARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 88889999999999888876665443
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.66 E-value=6.9e-07 Score=78.31 Aligned_cols=103 Identities=19% Similarity=0.280 Sum_probs=93.1
Q ss_pred HHHhHHhhCcCHHHHHHHHHHhhccCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHH
Q 005108 485 ARGNDLFKSERFTEACQAYGEGLRFDPSN---SVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYT---KALLRRAASN 558 (714)
Q Consensus 485 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~ 558 (714)
..|...++.|+|++|++.|+.+....|.. ..+.+.++.+|++.+++++|+..+++-++++|.++ .+++..|.++
T Consensus 15 ~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~ 94 (142)
T PF13512_consen 15 QEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSY 94 (142)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHH
Confidence 45899999999999999999999987765 68899999999999999999999999999999876 7789999999
Q ss_pred HHhcc---------------HHHHHHHHHHHHHhCCCCHHHHHH
Q 005108 559 SKLEK---------------WADAVRDFEVLRRELPDDNEIAES 587 (714)
Q Consensus 559 ~~~g~---------------~~eA~~~~~~al~~~p~~~~~~~~ 587 (714)
+.+.. ..+|...|+++++..|+...+...
T Consensus 95 ~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~dA 138 (142)
T PF13512_consen 95 YEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYAADA 138 (142)
T ss_pred HHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhHHHH
Confidence 99877 899999999999999998876654
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=98.66 E-value=6.4e-08 Score=75.38 Aligned_cols=64 Identities=27% Similarity=0.341 Sum_probs=35.1
Q ss_pred HHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005108 525 FKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAESL 588 (714)
Q Consensus 525 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~L 588 (714)
++.|++++|++.|+++++.+|++..+++.++.+|.+.|++++|...+++++..+|+++.+...+
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~ 65 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLL 65 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 3455555555555555555555555555555555555555555555555555555555444443
|
... |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.5e-07 Score=74.53 Aligned_cols=67 Identities=22% Similarity=0.354 Sum_probs=44.5
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHH
Q 005108 521 AACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAES 587 (714)
Q Consensus 521 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~ 587 (714)
..+|...++|++|+++++++++++|+++..++.+|.++..+|++++|++.|+++++..|+++.+...
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~ 68 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARAL 68 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHH
Confidence 3456666666666666666666666666666666666666666666666666666666666655443
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=98.65 E-value=5.8e-07 Score=87.06 Aligned_cols=102 Identities=20% Similarity=0.255 Sum_probs=94.1
Q ss_pred HHhHHhhCcCHHHHHHHHHHhhccCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHH
Q 005108 486 RGNDLFKSERFTEACQAYGEGLRFDPSN---SVLYCNRAACWFKLGQWERSVEDSNQALLIQPNY---TKALLRRAASNS 559 (714)
Q Consensus 486 ~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~ 559 (714)
.+.-+++.|+|.+|...|..-++..|+. +.++|+||.+++.+|+|++|...|..+++-.|+. +++++.+|.+..
T Consensus 147 ~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~ 226 (262)
T COG1729 147 AALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLG 226 (262)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHH
Confidence 4778999999999999999999999987 6899999999999999999999999999987765 588999999999
Q ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHH
Q 005108 560 KLEKWADAVRDFEVLRRELPDDNEIAES 587 (714)
Q Consensus 560 ~~g~~~eA~~~~~~al~~~p~~~~~~~~ 587 (714)
.+|+.++|...|+++++.+|+.+.....
T Consensus 227 ~l~~~d~A~atl~qv~k~YP~t~aA~~A 254 (262)
T COG1729 227 RLGNTDEACATLQQVIKRYPGTDAAKLA 254 (262)
T ss_pred HhcCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 9999999999999999999998776543
|
|
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.65 E-value=1e-05 Score=83.01 Aligned_cols=316 Identities=17% Similarity=0.077 Sum_probs=205.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH-HhcCCC--------cHHHHHHHHH
Q 005108 248 MGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEA-VRLDPN--------YWRAHQRLGS 318 (714)
Q Consensus 248 ~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a-l~~~p~--------~~~a~~~la~ 318 (714)
....|++..+...+....+-++....+.+.+.+..+..++..|++.+|.+.+... +...+. ..-+|.+||.
T Consensus 212 kVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGc 291 (696)
T KOG2471|consen 212 KVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGC 291 (696)
T ss_pred hHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcce
Confidence 4455677788888888888888887788899999999999999999999887653 222222 2346789999
Q ss_pred HHHHcCCHHHHHHHHHhhcCC-----------CChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHH
Q 005108 319 LLVRLGQVENARRHLCLSGQQ-----------ADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQ 387 (714)
Q Consensus 319 ~~~~~g~~~~A~~~~~~al~~-----------~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~ 387 (714)
++++++.|.-+..+|.++++. ...-....-...+..++.+..+...|+...|.++|.++...... .+.
T Consensus 292 Ih~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~-nPr 370 (696)
T KOG2471|consen 292 IHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHR-NPR 370 (696)
T ss_pred EeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhc-CcH
Confidence 999999999999999998841 11111222345677889999999999999999999999988655 467
Q ss_pred HHHHHHHHHHHcCC-------------------------------------------------HHHHHHHhhccccCCCC
Q 005108 388 LSMCRVEALLKLHQ-------------------------------------------------LEDAESSLSNIPKIEPS 418 (714)
Q Consensus 388 ~~~~la~~~~~~g~-------------------------------------------------~~~A~~~~~~al~~~p~ 418 (714)
+|..+|+|.....+ .+-|.-+++.++-+-|.
T Consensus 371 lWLRlAEcCima~~~~l~ee~~~s~s~~~i~~~vig~g~rr~~m~~~nt~~~~~qS~~~p~~slefA~vCLrnal~Ll~e 450 (696)
T KOG2471|consen 371 LWLRLAECCIMALQKGLLEEGNSSLSRSEIRVHVIGKGNRRQLMIEENTYVELAQSNQLPKLSLEFARVCLRNALYLLNE 450 (696)
T ss_pred HHHHHHHHHHHHhhhhhhhhccCCcccccceeeeecccchhheeecccceeccccccCCCccccHHHHHHHHhhhhcCch
Confidence 77778877542210 23344555554433211
Q ss_pred C--------------------------CCch-------------------hhhhhhhhhhHHHHHHHHHHHHHhCcHHHH
Q 005108 419 T--------------------------VSSS-------------------QTRFFGMLSEAYTFFVRAQIEMALGRFENA 453 (714)
Q Consensus 419 ~--------------------------~~~~-------------------~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 453 (714)
. .... ...+. .....++...+.+-..+|+.-.|
T Consensus 451 ~q~~~~~~~~a~ns~~~g~~~e~~e~~~t~~Sk~h~gd~~~~~p~ssp~~~e~le--Nm~~ai~A~~ayV~L~Lgd~i~A 528 (696)
T KOG2471|consen 451 KQDLGSILSVAMNSTKEGSSSEHEEGNTTTDSKEHKGDMSQEIPQSSPSAFEDLE--NMRQAIFANMAYVELELGDPIKA 528 (696)
T ss_pred hhcchhhhhhhccccccCCCCcCCCCCCCcchhcCCCCCCccCCCCCcchHHHHH--HHHHHHHHHHHHHHHHhcChhhH
Confidence 0 0000 01111 12345677788889999999999
Q ss_pred HHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhcc-----------------------C
Q 005108 454 VTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRF-----------------------D 510 (714)
Q Consensus 454 ~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~-----------------------~ 510 (714)
+...++.++. ++-...+..+..+ .-|.+++...+..+|...+.--+-- +
T Consensus 529 L~~a~kLLq~-~~lS~~~kfLGHi-------YAaEAL~lldr~seA~~HL~p~~~~~~~f~~~~n~~Df~~~~~~~e~l~ 600 (696)
T KOG2471|consen 529 LSAATKLLQL-ADLSKIYKFLGHI-------YAAEALCLLDRPSEAGAHLSPYLLGQDDFKLPYNQEDFDQWWKHTETLD 600 (696)
T ss_pred HHHHHHHHhh-hhhhhHHHHHHHH-------HHHHHHHHcCChhhhhhccChhhcCCcccccccchhhhhhhhccccccC
Confidence 9999998875 3444445444333 2256667777777777665431110 1
Q ss_pred CC---------------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhccHHHHHHHHHH
Q 005108 511 PS---------------NSVLYCNRAACWFKLGQWERSVEDSNQALLIQP--NYTKALLRRAASNSKLEKWADAVRDFEV 573 (714)
Q Consensus 511 p~---------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~eA~~~~~~ 573 (714)
|. ....++++|.+|.-+|++++|..++..+..+-+ ..+++....-.+-.++|+...|...+++
T Consensus 601 ~s~~r~~q~~~~sv~~Ar~v~~~nLa~a~alq~~~dqAk~ll~~aatl~hs~v~~~A~~lavyidL~~G~~q~al~~lk~ 680 (696)
T KOG2471|consen 601 PSTGRTRQSVFLSVEEARGVLFANLAAALALQGHHDQAKSLLTHAATLLHSLVNVQATVLAVYIDLMLGRSQDALARLKQ 680 (696)
T ss_pred CcCCCCcccccCCHHHHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhhccccHHHHHHHHHHHHhcCCCcchHHHHHh
Confidence 10 024556677777777777777777766666554 3444544444455666666666665554
Q ss_pred H
Q 005108 574 L 574 (714)
Q Consensus 574 a 574 (714)
.
T Consensus 681 ~ 681 (696)
T KOG2471|consen 681 C 681 (696)
T ss_pred c
Confidence 3
|
|
| >PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A | Back alignment and domain information |
|---|
Probab=98.65 E-value=2.6e-08 Score=83.49 Aligned_cols=65 Identities=20% Similarity=0.370 Sum_probs=53.8
Q ss_pred CceEEEeecCCCccccccchHHHHHHhhCC---CcEEEEEeccc-------------------------CcchhhhCCcc
Q 005108 629 GVSVVHFKSASNLHCKQISPYVETLCGRYP---SINFLKVDIDE-------------------------SPGVAHAENVR 680 (714)
Q Consensus 629 ~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~---~~~~~~vd~d~-------------------------~~~l~~~~~v~ 680 (714)
++++++||+.||++|+...|.|.++..+++ ++.|+.|.+|+ ...+.+.|+|.
T Consensus 2 K~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~ 81 (95)
T PF13905_consen 2 KPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGIN 81 (95)
T ss_dssp SEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-T
T ss_pred CEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCCC
Confidence 578999999999999999999999999998 69999988876 22357789999
Q ss_pred ccceEEEE-eCCeE
Q 005108 681 IVPTFKIY-KNGSR 693 (714)
Q Consensus 681 ~~Pt~~~~-~~G~~ 693 (714)
.+|+++++ ++|++
T Consensus 82 ~iP~~~lld~~G~I 95 (95)
T PF13905_consen 82 GIPTLVLLDPDGKI 95 (95)
T ss_dssp SSSEEEEEETTSBE
T ss_pred cCCEEEEECCCCCC
Confidence 99999888 88874
|
... |
| >cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX | Back alignment and domain information |
|---|
Probab=98.64 E-value=4.1e-08 Score=87.88 Aligned_cols=70 Identities=14% Similarity=0.215 Sum_probs=57.4
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhCC----CcEEEEEecccCc-------------------------chhhhCC
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRYP----SINFLKVDIDESP-------------------------GVAHAEN 678 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~----~~~~~~vd~d~~~-------------------------~l~~~~~ 678 (714)
+++++++||++||++|+...|.++++..++. ++.++.|++|+.. .+++.|+
T Consensus 17 Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 96 (132)
T cd02964 17 GKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQFK 96 (132)
T ss_pred CCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHHcC
Confidence 4689999999999999999999999887664 4778888777532 4566799
Q ss_pred ccccceEEEE-eCCeEEEEE
Q 005108 679 VRIVPTFKIY-KNGSRMKEI 697 (714)
Q Consensus 679 v~~~Pt~~~~-~~G~~~~~~ 697 (714)
|.++|+++++ ++|+++.+.
T Consensus 97 v~~iPt~~lid~~G~iv~~~ 116 (132)
T cd02964 97 VEGIPTLVVLKPDGDVVTTN 116 (132)
T ss_pred CCCCCEEEEECCCCCEEchh
Confidence 9999999888 689877654
|
Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX. |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=98.64 E-value=6.2e-07 Score=77.45 Aligned_cols=98 Identities=23% Similarity=0.187 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCC---
Q 005108 436 TFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPS--- 512 (714)
Q Consensus 436 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~--- 512 (714)
+++.+|.++...|+.++|+.+|++++............+ ..+|..+...|++++|+..+++++...|+
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~---------i~lastlr~LG~~deA~~~L~~~~~~~p~~~~ 73 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRAL---------IQLASTLRNLGRYDEALALLEEALEEFPDDEL 73 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHH---------HHHHHHHHHcCCHHHHHHHHHHHHHHCCCccc
Confidence 466777777777777777777777777654443222111 12377777777777777777777776666
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 005108 513 NSVLYCNRAACWFKLGQWERSVEDSNQALL 542 (714)
Q Consensus 513 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 542 (714)
+..+...++.++...|++++|+..+-.++.
T Consensus 74 ~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 74 NAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 566666677777777777777777766553
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.9e-05 Score=87.18 Aligned_cols=228 Identities=16% Similarity=0.087 Sum_probs=160.4
Q ss_pred HHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCC
Q 005108 287 TGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGD 366 (714)
Q Consensus 287 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~ 366 (714)
...+++.+|+..+.+.++..|+..-+....|..+.++|+.++|..+++..-..... ....+.. +-.+|...++
T Consensus 20 ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~------l~~~y~d~~~ 92 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQF------LQNVYRDLGK 92 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHH------HHHHHHHHhh
Confidence 45588999999999999999999999999999999999999999777654432111 2222222 2334889999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHH
Q 005108 367 WKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMA 446 (714)
Q Consensus 367 ~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 446 (714)
+++|...|++++..+|. ......+-.+|.+.+.|.+-.+.--++-+..|.+. .+.|..+..++..
T Consensus 93 ~d~~~~~Ye~~~~~~P~--eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~-------------yyfWsV~Slilqs 157 (932)
T KOG2053|consen 93 LDEAVHLYERANQKYPS--EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRA-------------YYFWSVISLILQS 157 (932)
T ss_pred hhHHHHHHHHHHhhCCc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccc-------------chHHHHHHHHHHh
Confidence 99999999999999998 56666677788888777665555444455667661 4456555555555
Q ss_pred hCcHHH---------HHHHHHHHhccC-CCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHH-H-hhccCCCCH
Q 005108 447 LGRFEN---------AVTAAEKAGQID-PRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYG-E-GLRFDPSNS 514 (714)
Q Consensus 447 ~g~~~~---------A~~~~~~al~~~-p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~-~-al~~~p~~~ 514 (714)
....++ |...+++.++.. +-....-..+ .-.++..+|+|++|.+.+. . +-+..+.+.
T Consensus 158 ~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~L-----------yl~iL~~~~k~~eal~~l~~~la~~l~~~~~ 226 (932)
T KOG2053|consen 158 IFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIIL-----------YLLILELQGKYQEALEFLAITLAEKLTSANL 226 (932)
T ss_pred ccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHH-----------HHHHHHhcccHHHHHHHHHHHHHHhccccch
Confidence 444333 444555555554 2222211111 1456778899999999983 3 333444555
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC
Q 005108 515 VLYCNRAACWFKLGQWERSVEDSNQALLIQPNY 547 (714)
Q Consensus 515 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 547 (714)
..-......+..+++|.+-.+...+++..++++
T Consensus 227 ~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~Dd 259 (932)
T KOG2053|consen 227 YLENKKLDLLKLLNRWQELFELSSRLLEKGNDD 259 (932)
T ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHHHhCCcc
Confidence 555667788889999999999999999999987
|
|
| >TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic | Back alignment and domain information |
|---|
Probab=98.64 E-value=7e-08 Score=106.68 Aligned_cols=93 Identities=20% Similarity=0.279 Sum_probs=77.6
Q ss_pred hHHhhhc-cCCCceEEEeecCCCccccccchHHHHHHhhCC----CcEEEEEecccCcchhhhCCccccceEEEEeCCeE
Q 005108 619 EQFRAAV-SLPGVSVVHFKSASNLHCKQISPYVETLCGRYP----SINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSR 693 (714)
Q Consensus 619 e~~~~~i-~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~----~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~ 693 (714)
..|...+ .....++|.||++||++|+.+.|.++++...+. .+.|+++|++.+. +.. ++|+++||+++|++|..
T Consensus 354 ~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~-~~~-~~i~~~Pt~~~~~~~~~ 431 (462)
T TIGR01130 354 KNFDEIVLDETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAND-VPP-FEVEGFPTIKFVPAGKK 431 (462)
T ss_pred cCHHHHhccCCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCc-cCC-CCccccCEEEEEeCCCC
Confidence 4555544 456789999999999999999999999998885 3789999998754 444 99999999999999876
Q ss_pred E--EEEcCC-CHHHHHHHHhhhc
Q 005108 694 M--KEIVCP-SRDMLEHSVRHYS 713 (714)
Q Consensus 694 ~--~~~~g~-~~~~l~~~~~~~~ 713 (714)
+ .++.|. +.+.|.++|.+++
T Consensus 432 ~~~~~~~g~~~~~~l~~~l~~~~ 454 (462)
T TIGR01130 432 SEPVPYDGDRTLEDFSKFIAKHA 454 (462)
T ss_pred cCceEecCcCCHHHHHHHHHhcC
Confidence 4 567787 9999999998864
|
Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs). |
| >KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.63 E-value=6.4e-08 Score=99.77 Aligned_cols=117 Identities=21% Similarity=0.452 Sum_probs=111.2
Q ss_pred HHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Q 005108 483 ARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLE 562 (714)
Q Consensus 483 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 562 (714)
..+.+..++..+.|+.|+..|.++|+++|+.+.++-+++.++.+.+++..|+..+.++++++|....+|++.|.++.+++
T Consensus 7 ~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 7 LKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALG 86 (476)
T ss_pred hhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHH
Confidence 34568889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhc
Q 005108 563 KWADAVRDFEVLRRELPDDNEIAESLFHAQVSLKKSR 599 (714)
Q Consensus 563 ~~~eA~~~~~~al~~~p~~~~~~~~L~~~~~~l~~~~ 599 (714)
++.+|...|++...+.|+++.+...+..+.......+
T Consensus 87 ~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~~~ 123 (476)
T KOG0376|consen 87 EFKKALLDLEKVKKLAPNDPDATRKIDECNKIVSEEK 123 (476)
T ss_pred HHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999988877643
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.7e-07 Score=74.09 Aligned_cols=70 Identities=27% Similarity=0.379 Sum_probs=65.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 005108 249 GNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGS 318 (714)
Q Consensus 249 g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~ 318 (714)
...|+..++|++|++++++++..+|+++..|..+|.++..+|++++|+..|+++++..|++..+...++.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~ 71 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAM 71 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence 4678999999999999999999999999999999999999999999999999999999998887766554
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.62 E-value=3.3e-06 Score=81.05 Aligned_cols=180 Identities=16% Similarity=0.131 Sum_probs=140.1
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhc
Q 005108 383 DFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQ 462 (714)
Q Consensus 383 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 462 (714)
+..+..++..|...++.|++++|+..|+.+....|..+-. ..+...++.++++.+++++|+..+++.+.
T Consensus 31 ~~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~-----------~qa~l~l~yA~Yk~~~y~~A~~~~drFi~ 99 (254)
T COG4105 31 NLPASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYS-----------EQAQLDLAYAYYKNGEYDLALAYIDRFIR 99 (254)
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccc-----------HHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 4456677789999999999999999999999999987421 44678889999999999999999999999
Q ss_pred cCCCCHHHHHHHHhHHHHHHHHHHHhHHhh--------CcCHHHHHHHHHHhhccCCCCH-----------------HHH
Q 005108 463 IDPRNVEVAVLLNNVKLVARARARGNDLFK--------SERFTEACQAYGEGLRFDPSNS-----------------VLY 517 (714)
Q Consensus 463 ~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~--------~g~~~~A~~~~~~al~~~p~~~-----------------~~~ 517 (714)
+.|.++++-+.+-- +|.+++. +.-..+|+..|++.++..|+.. ..-
T Consensus 100 lyP~~~n~dY~~Yl---------kgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~E 170 (254)
T COG4105 100 LYPTHPNADYAYYL---------KGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHE 170 (254)
T ss_pred hCCCCCChhHHHHH---------HHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHH
Confidence 99988765544311 2444332 2334578888999999999861 122
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCH
Q 005108 518 CNRAACWFKLGQWERSVEDSNQALLIQPNY---TKALLRRAASNSKLEKWADAVRDFEVLRRELPDDN 582 (714)
Q Consensus 518 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~ 582 (714)
...|..|.+.|.|..|+.-++.+++..|+. .+++..+..+|..+|-.++|...-.-+-.-.|+.+
T Consensus 171 m~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s~ 238 (254)
T COG4105 171 MAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDSQ 238 (254)
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCc
Confidence 346888999999999999999999987664 47888999999999999999886554444445544
|
|
| >PRK03147 thiol-disulfide oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.2e-07 Score=89.41 Aligned_cols=86 Identities=23% Similarity=0.361 Sum_probs=74.3
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhCCC--cEEEEEeccc----------------------CcchhhhCCccccc
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRYPS--INFLKVDIDE----------------------SPGVAHAENVRIVP 683 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~--~~~~~vd~d~----------------------~~~l~~~~~v~~~P 683 (714)
.+++++.||++||+.|+...+.+.++..++++ +.++.|++++ ..++++.|+|..+|
T Consensus 61 ~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P 140 (173)
T PRK03147 61 GKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVIDAYGVGPLP 140 (173)
T ss_pred CCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHHHcCCCCcC
Confidence 46799999999999999999999999998864 7888888653 45678999999999
Q ss_pred eEEEE-eCCeEEEEEcCC-CHHHHHHHHhhhc
Q 005108 684 TFKIY-KNGSRMKEIVCP-SRDMLEHSVRHYS 713 (714)
Q Consensus 684 t~~~~-~~G~~~~~~~g~-~~~~l~~~~~~~~ 713 (714)
+++++ ++|+.+....|. +.+++++.|+.+.
T Consensus 141 ~~~lid~~g~i~~~~~g~~~~~~l~~~l~~~~ 172 (173)
T PRK03147 141 TTFLIDKDGKVVKVITGEMTEEQLEEYLEKIK 172 (173)
T ss_pred eEEEECCCCcEEEEEeCCCCHHHHHHHHHHhc
Confidence 98777 799999888998 9999999988753
|
|
| >cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif | Back alignment and domain information |
|---|
Probab=98.61 E-value=5.6e-08 Score=86.95 Aligned_cols=70 Identities=11% Similarity=0.226 Sum_probs=57.9
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhCC----CcEEEEEecccC------------------------cchhhhCCc
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRYP----SINFLKVDIDES------------------------PGVAHAENV 679 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~----~~~~~~vd~d~~------------------------~~l~~~~~v 679 (714)
.++++|+||++||++|+...|.+.++..++. ++.++.|++|.. ..+++.|+|
T Consensus 18 gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 97 (131)
T cd03009 18 GKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFKI 97 (131)
T ss_pred CcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHcCC
Confidence 4589999999999999999999998877663 577777777643 346789999
Q ss_pred cccceEEEE-eCCeEEEEE
Q 005108 680 RIVPTFKIY-KNGSRMKEI 697 (714)
Q Consensus 680 ~~~Pt~~~~-~~G~~~~~~ 697 (714)
.++|+++++ ++|+++.+.
T Consensus 98 ~~~P~~~lid~~G~i~~~~ 116 (131)
T cd03009 98 EGIPTLIILDADGEVVTTD 116 (131)
T ss_pred CCCCEEEEECCCCCEEccc
Confidence 999999999 699987654
|
TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the |
| >TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626 | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.6e-07 Score=87.24 Aligned_cols=81 Identities=12% Similarity=0.084 Sum_probs=63.2
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhCCCcEE------EEEeccc-----------------------------Ccc
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRYPSINF------LKVDIDE-----------------------------SPG 672 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~------~~vd~d~-----------------------------~~~ 672 (714)
+++.+|+|||.||++|+...|.++.+..+ ++.+ .-||+|+ ...
T Consensus 59 GKV~lvn~~Aswc~~c~~e~P~l~~l~~~--~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vllD~~g~ 136 (184)
T TIGR01626 59 GKVRVVHHIAGRTSAKEXNASLIDAIKAA--KFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVLDDKGA 136 (184)
T ss_pred CCEEEEEEEecCCChhhccchHHHHHHHc--CCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEEECCcch
Confidence 66899999999999999999999999764 2333 4455443 223
Q ss_pred hhhhCCccccceE-EEE-eCCeEEEEEcCC-CHHHHHHHHh
Q 005108 673 VAHAENVRIVPTF-KIY-KNGSRMKEIVCP-SRDMLEHSVR 710 (714)
Q Consensus 673 l~~~~~v~~~Pt~-~~~-~~G~~~~~~~g~-~~~~l~~~~~ 710 (714)
++.+|+|.++|+. +|+ ++|+++.+..|. +.+++++.+.
T Consensus 137 v~~~~gv~~~P~T~fVIDk~GkVv~~~~G~l~~ee~e~~~~ 177 (184)
T TIGR01626 137 VKNAWQLNSEDSAIIVLDKTGKVKFVKEGALSDSDIQTVIS 177 (184)
T ss_pred HHHhcCCCCCCceEEEECCCCcEEEEEeCCCCHHHHHHHHH
Confidence 5678999999865 455 999999999999 8888876443
|
This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ. |
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=98.59 E-value=5.8e-07 Score=81.11 Aligned_cols=97 Identities=22% Similarity=0.226 Sum_probs=80.3
Q ss_pred HHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhC----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcc--
Q 005108 496 FTEACQAYGEGLRFDPSNSVLYCNRAACWFKLG----------QWERSVEDSNQALLIQPNYTKALLRRAASNSKLEK-- 563 (714)
Q Consensus 496 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g----------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-- 563 (714)
|+.|.+.++.....+|.+++.+++.|.++..+. .+++|+.-|++|+.++|+..++++.+|.+|..++.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence 688999999999999999999999998887763 46788888999999999999999999999987764
Q ss_pred ---------HHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005108 564 ---------WADAVRDFEVLRRELPDDNEIAESLFHAQ 592 (714)
Q Consensus 564 ---------~~eA~~~~~~al~~~p~~~~~~~~L~~~~ 592 (714)
|++|.++|++|...+|++...+..|..+.
T Consensus 87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~ 124 (186)
T PF06552_consen 87 PDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMAA 124 (186)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 88999999999999999999988887653
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.1e-07 Score=113.31 Aligned_cols=86 Identities=21% Similarity=0.282 Sum_probs=72.5
Q ss_pred CCCceEEEeecCCCccccccchHHHHHHhhCCC--cEEEEEe-----c----------------------ccCcchhhhC
Q 005108 627 LPGVSVVHFKSASNLHCKQISPYVETLCGRYPS--INFLKVD-----I----------------------DESPGVAHAE 677 (714)
Q Consensus 627 ~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~--~~~~~vd-----~----------------------d~~~~l~~~~ 677 (714)
..++++|+||+.||++|+...|.|+++..+|++ +.++.|. . |...++...|
T Consensus 419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~~ 498 (1057)
T PLN02919 419 KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWREL 498 (1057)
T ss_pred CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHhc
Confidence 356899999999999999999999999999964 6666663 1 1234567899
Q ss_pred CccccceEEEE-eCCeEEEEEcCC-CHHHHHHHHhhh
Q 005108 678 NVRIVPTFKIY-KNGSRMKEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 678 ~v~~~Pt~~~~-~~G~~~~~~~g~-~~~~l~~~~~~~ 712 (714)
+|.++|+++++ ++|+++.++.|. ..++|++.|+..
T Consensus 499 ~V~~iPt~ilid~~G~iv~~~~G~~~~~~l~~~l~~~ 535 (1057)
T PLN02919 499 GVSSWPTFAVVSPNGKLIAQLSGEGHRKDLDDLVEAA 535 (1057)
T ss_pred CCCccceEEEECCCCeEEEEEecccCHHHHHHHHHHH
Confidence 99999999999 899999999999 888888888764
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.58 E-value=2.2e-06 Score=72.32 Aligned_cols=101 Identities=29% Similarity=0.328 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc----HHHHHHHHH
Q 005108 243 EELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNY----WRAHQRLGS 318 (714)
Q Consensus 243 ~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~a~~~la~ 318 (714)
..+-..|..+...|+.+.|++.|.+++.+.|.++.+|.+++.++..+|+.++|++.+++++++.... ..++...|.
T Consensus 44 ~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~ 123 (175)
T KOG4555|consen 44 RELELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGL 123 (175)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHH
Confidence 4566788999999999999999999999999999999999999999999999999999999986543 468899999
Q ss_pred HHHHcCCHHHHHHHHHhhcCCCChH
Q 005108 319 LLVRLGQVENARRHLCLSGQQADPT 343 (714)
Q Consensus 319 ~~~~~g~~~~A~~~~~~al~~~~~~ 343 (714)
+|..+|+.+.|...|+.+.+...+-
T Consensus 124 lyRl~g~dd~AR~DFe~AA~LGS~F 148 (175)
T KOG4555|consen 124 LYRLLGNDDAARADFEAAAQLGSKF 148 (175)
T ss_pred HHHHhCchHHHHHhHHHHHHhCCHH
Confidence 9999999999999998886544443
|
|
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.57 E-value=2.9e-06 Score=87.00 Aligned_cols=295 Identities=14% Similarity=0.097 Sum_probs=191.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHCCCHHHHHHHHHHHHhc---------------C
Q 005108 243 EELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAA-LTGLGRIGEAVKECEEAVRL---------------D 306 (714)
Q Consensus 243 ~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~---------------~ 306 (714)
..+...+...+..++|+..++++...-..+..+.+++++.+.+ |++.|.+.. ...+++...+ +
T Consensus 18 ~~l~~~a~~~f~~~~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~~tq~-~~ll~el~aL~~~~~~~~~~~~gld~ 96 (696)
T KOG2471|consen 18 YSLLCQAHEQFNNSEFDRCLELLQELETRGESSGPVLHNRAVVSYYKTGCTQH-SVLLKELEALTADADAPGDVSSGLSL 96 (696)
T ss_pred HHHHHHHHhccCCcchHHHHHHHHHHHhccccccceeeehhhHHHHhcccchh-HHHHHHHHHHHHhhccccchhcchhh
Confidence 4455566777888999999999999988888887777777765 445554432 1222221111 1
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHH---HHHHc---
Q 005108 307 PNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGD---AAIAA--- 380 (714)
Q Consensus 307 p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~---~al~~--- 380 (714)
.+....+++.|.+|+...++..|++.....+...++-.......+ .+..-..+....+.++|+.++. +.+..
T Consensus 97 ~~~t~~~yn~aVi~yh~~~~g~a~~~~~~lv~r~e~le~~~aa~v--~~l~~~l~~~t~q~e~al~~l~vL~~~~~~~~~ 174 (696)
T KOG2471|consen 97 KQGTVMDYNFAVIFYHHEENGSAMQLSSNLVSRTESLESSSAASV--TLLSDLLAAETSQCEEALDYLNVLAEIEAEKRM 174 (696)
T ss_pred hcchHHhhhhheeeeeHhhcchHHHhhhhHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 223567888999999999999999887766543333222111111 1111222334444555554433 22221
Q ss_pred CCC--------------------------CCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhH
Q 005108 381 GAD--------------------------FSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEA 434 (714)
Q Consensus 381 ~p~--------------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 434 (714)
.+. ....+.......|.+..+..-+....+.+..+..+. +
T Consensus 175 ~~~gn~~~~nn~~kt~s~~aAe~s~~~a~~k~~~~~ykVr~llq~~~Lk~~krevK~vmn~a~~s--------------~ 240 (696)
T KOG2471|consen 175 KLVGNHIPANNLLKTLSPSAAERSFSTADLKLELQLYKVRFLLQTRNLKLAKREVKHVMNIAQDS--------------S 240 (696)
T ss_pred cccccccchhhhcccCCcchhcccchhhccchhhhHhhHHHHHHHHHHHHHHHhhhhhhhhcCCC--------------c
Confidence 000 001233345666778888888888888777766665 6
Q ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHH-hccCCC---CHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhcc-
Q 005108 435 YTFFVRAQIEMALGRFENAVTAAEKA-GQIDPR---NVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRF- 509 (714)
Q Consensus 435 ~~~~~la~~~~~~g~~~~A~~~~~~a-l~~~p~---~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~- 509 (714)
......++.++..|++.+|.+.+... +...+. .++....+ .+.++|.++++.+.|.-+..+|.+|++.
T Consensus 241 ~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~ci-------f~NNlGcIh~~~~~y~~~~~~F~kAL~N~ 313 (696)
T KOG2471|consen 241 MALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCI-------FNNNLGCIHYQLGCYQASSVLFLKALRNS 313 (696)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhhe-------eecCcceEeeehhhHHHHHHHHHHHHHHH
Confidence 67888999999999999999988654 222232 11111111 1124599999999999999999999961
Q ss_pred --------CC---------CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 005108 510 --------DP---------SNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKL 561 (714)
Q Consensus 510 --------~p---------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 561 (714)
.| ...+++|+.|..|...|+.-.|.++|.++....-.++..|++++.|....
T Consensus 314 c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 314 CSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMA 382 (696)
T ss_pred HHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 11 23578888888888888888888888888888888888888888887543
|
|
| >cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.9e-07 Score=81.13 Aligned_cols=72 Identities=25% Similarity=0.362 Sum_probs=65.2
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhC--CCcEEEEEecccC-----------------------cchhhhCCcccc
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRY--PSINFLKVDIDES-----------------------PGVAHAENVRIV 682 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~--~~~~~~~vd~d~~-----------------------~~l~~~~~v~~~ 682 (714)
.+.+++.||+.||+.|+...+.+.++..++ +++.++.|+++.. ..+++.|++.++
T Consensus 19 ~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (116)
T cd02966 19 GKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYGVRGL 98 (116)
T ss_pred CCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcCcCcc
Confidence 468999999999999999999999999998 6799999999886 778999999999
Q ss_pred ceEEEE-eCCeEEEEEcC
Q 005108 683 PTFKIY-KNGSRMKEIVC 699 (714)
Q Consensus 683 Pt~~~~-~~G~~~~~~~g 699 (714)
|+++++ ++|+.+.++.|
T Consensus 99 P~~~l~d~~g~v~~~~~g 116 (116)
T cd02966 99 PTTFLIDRDGRIRARHVG 116 (116)
T ss_pred ceEEEECCCCcEEEEecC
Confidence 999888 79999988765
|
TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases. |
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.54 E-value=2.3e-05 Score=73.24 Aligned_cols=195 Identities=14% Similarity=0.074 Sum_probs=129.1
Q ss_pred HHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHc----CCC-CCHHHHHHHHH
Q 005108 320 LVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAA----GAD-FSPQLSMCRVE 394 (714)
Q Consensus 320 ~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~----~p~-~~~~~~~~la~ 394 (714)
+...+++++|.++|.++ +..|...++|..|-..|.++... +.. .....|...+.
T Consensus 24 fgg~~k~eeAadl~~~A---------------------an~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~ 82 (288)
T KOG1586|consen 24 FGGSNKYEEAAELYERA---------------------ANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAAN 82 (288)
T ss_pred cCCCcchHHHHHHHHHH---------------------HHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 33445788888888766 33455566777777777666544 221 12333444455
Q ss_pred HHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHh-CcHHHHHHHHHHHhccCCCCHHHHHH
Q 005108 395 ALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMAL-GRFENAVTAAEKAGQIDPRNVEVAVL 473 (714)
Q Consensus 395 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~ 473 (714)
+|.+ .+.++|+.++++++++..+- .....-+..+..+|.+|... .++++|+.+|+++-+........-..
T Consensus 83 cykk-~~~~eAv~cL~~aieIyt~~--------Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssA 153 (288)
T KOG1586|consen 83 CYKK-VDPEEAVNCLEKAIEIYTDM--------GRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSA 153 (288)
T ss_pred Hhhc-cChHHHHHHHHHHHHHHHhh--------hHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhH
Confidence 5544 59999999999998876653 11222345567888888775 89999999999987654433221110
Q ss_pred HHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCH-------HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Q 005108 474 LNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNS-------VLYCNRAACWFKLGQWERSVEDSNQALLIQPN 546 (714)
Q Consensus 474 l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~-------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 546 (714)
- ..+...+..-...++|.+|+..|++.....-++. ..++.-|.|++-..+.-.+...+++..+++|.
T Consensus 154 N------KC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~ 227 (288)
T KOG1586|consen 154 N------KCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPA 227 (288)
T ss_pred H------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCc
Confidence 0 0011236666778999999999999887654443 34555678888888888888899999999998
Q ss_pred CHHH
Q 005108 547 YTKA 550 (714)
Q Consensus 547 ~~~~ 550 (714)
....
T Consensus 228 F~ds 231 (288)
T KOG1586|consen 228 FTDS 231 (288)
T ss_pred cccc
Confidence 7533
|
|
| >cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif | Back alignment and domain information |
|---|
Probab=98.53 E-value=3.2e-07 Score=81.04 Aligned_cols=80 Identities=20% Similarity=0.179 Sum_probs=62.4
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEe---------------------cccCcchhhhCCccccceEE
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVD---------------------IDESPGVAHAENVRIVPTFK 686 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd---------------------~d~~~~l~~~~~v~~~Pt~~ 686 (714)
.+++++.||++||+.|+.+.|.+..+..++. +..+.+| .|...++++.|+|.++|+++
T Consensus 20 ~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~-~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P~~~ 98 (123)
T cd03011 20 GKPVLVYFWATWCPVCRFTSPTVNQLAADYP-VVSVALRSGDDGAVARFMQKKGYGFPVINDPDGVISARWGVSVTPAIV 98 (123)
T ss_pred CCEEEEEEECCcChhhhhhChHHHHHHhhCC-EEEEEccCCCHHHHHHHHHHcCCCccEEECCCcHHHHhCCCCcccEEE
Confidence 4689999999999999999999999887743 1112111 23456789999999999999
Q ss_pred EEeCCeEEEEEcCC-CHHHHHHH
Q 005108 687 IYKNGSRMKEIVCP-SRDMLEHS 708 (714)
Q Consensus 687 ~~~~G~~~~~~~g~-~~~~l~~~ 708 (714)
++.+|+++.+..|. +.+.|++.
T Consensus 99 vid~~gi~~~~~g~~~~~~~~~~ 121 (123)
T cd03011 99 IVDPGGIVFVTTGVTSEWGLRLR 121 (123)
T ss_pred EEcCCCeEEEEeccCCHHHHHhh
Confidence 99544488899999 98888764
|
The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c. |
| >KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.2e-07 Score=99.97 Aligned_cols=94 Identities=19% Similarity=0.252 Sum_probs=75.6
Q ss_pred hhHHhhhc-cCCCceEEEeecCCCccccccchHHHHHHhhCC---CcEEEEEecccCcchhhhCCccccceEEEEeCCeE
Q 005108 618 LEQFRAAV-SLPGVSVVHFKSASNLHCKQISPYVETLCGRYP---SINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSR 693 (714)
Q Consensus 618 ~e~~~~~i-~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~---~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~ 693 (714)
...|+.++ ....-++|.|+|+||++|+++.|.+++|.+.|. ++.+.++|...++- ..+.|.+.||+.+|+.|..
T Consensus 373 gknfd~iv~de~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~~~vviAKmDaTaNd~--~~~~~~~fPTI~~~pag~k 450 (493)
T KOG0190|consen 373 GKNFDDIVLDEGKDVLVEFYAPWCGHCKALAPIYEELAEKYKDDENVVIAKMDATANDV--PSLKVDGFPTILFFPAGHK 450 (493)
T ss_pred ecCHHHHhhccccceEEEEcCcccchhhhhhhHHHHHHHHhcCCCCcEEEEeccccccC--ccccccccceEEEecCCCC
Confidence 35666654 446789999999999999999999999999985 58889999987663 3447777999999988874
Q ss_pred E--EEEcCC-CHHHHHHHHhhhc
Q 005108 694 M--KEIVCP-SRDMLEHSVRHYS 713 (714)
Q Consensus 694 ~--~~~~g~-~~~~l~~~~~~~~ 713 (714)
. -.+.|. +.++|..+|+..+
T Consensus 451 ~~pv~y~g~R~le~~~~fi~~~a 473 (493)
T KOG0190|consen 451 SNPVIYNGDRTLEDLKKFIKKSA 473 (493)
T ss_pred CCCcccCCCcchHHHHhhhccCC
Confidence 3 345577 9999999998764
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=5.6e-07 Score=93.41 Aligned_cols=70 Identities=23% Similarity=0.217 Sum_probs=66.6
Q ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Q 005108 237 ICGGDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAA---FRSNRAAALTGLGRIGEAVKECEEAVRLD 306 (714)
Q Consensus 237 ~~p~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~---~~~~la~~~~~~g~~~~A~~~~~~al~~~ 306 (714)
.+|+++.+++++|..|+..|+|++|+.+|+++++++|++.. +|+++|.+|..+|++++|+.+|++++++.
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 48899999999999999999999999999999999999985 49999999999999999999999999973
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=98.49 E-value=2.2e-06 Score=83.15 Aligned_cols=100 Identities=23% Similarity=0.211 Sum_probs=92.1
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc---HHHHH
Q 005108 241 DAEELKRMGNELYRKGCFGEALSMYDKAISLAPRN---AAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNY---WRAHQ 314 (714)
Q Consensus 241 ~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~ 314 (714)
++.-+|..|..+++.|+|.+|...|..-++..|+. +.++++||.+++.+|+|++|...|..+++..|+. +++++
T Consensus 140 ~~~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdall 219 (262)
T COG1729 140 PATKLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALL 219 (262)
T ss_pred chhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHH
Confidence 34558999999999999999999999999999986 7899999999999999999999999999987765 78999
Q ss_pred HHHHHHHHcCCHHHHHHHHHhhcCCC
Q 005108 315 RLGSLLVRLGQVENARRHLCLSGQQA 340 (714)
Q Consensus 315 ~la~~~~~~g~~~~A~~~~~~al~~~ 340 (714)
.+|.+..++|+.++|...|+++++..
T Consensus 220 Klg~~~~~l~~~d~A~atl~qv~k~Y 245 (262)
T COG1729 220 KLGVSLGRLGNTDEACATLQQVIKRY 245 (262)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHC
Confidence 99999999999999999999998733
|
|
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.9e-06 Score=80.78 Aligned_cols=115 Identities=24% Similarity=0.349 Sum_probs=96.4
Q ss_pred HHHHHHHhHHhhCcCHHHHHHHHHHhhcc--------CCCC----------HHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 005108 481 ARARARGNDLFKSERFTEACQAYGEGLRF--------DPSN----------SVLYCNRAACWFKLGQWERSVEDSNQALL 542 (714)
Q Consensus 481 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~----------~~~~~~la~~~~~~g~~~~A~~~~~~al~ 542 (714)
..+...|+-+++.|+|.+|...|.+|+-. .|.+ ..++.|++.|+...|+|-++++.+..++.
T Consensus 179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~ 258 (329)
T KOG0545|consen 179 PVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILR 258 (329)
T ss_pred HHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHh
Confidence 33456799999999999999999988742 4444 45788999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHH-HHHHHHHHHHh
Q 005108 543 IQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEI-AESLFHAQVSL 595 (714)
Q Consensus 543 ~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~-~~~L~~~~~~l 595 (714)
.+|.+..+|+..|.++...=+.++|...|.++++++|.-..+ ...|..+...+
T Consensus 259 ~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVsrElr~le~r~ 312 (329)
T KOG0545|consen 259 HHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVSRELRLLENRM 312 (329)
T ss_pred cCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999976543 34444443333
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=6.1e-07 Score=93.16 Aligned_cols=64 Identities=22% Similarity=0.311 Sum_probs=41.7
Q ss_pred HHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHH---HHHHHHHHHHhCCHHHHHHHHHHHHHh
Q 005108 480 VARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVL---YCNRAACWFKLGQWERSVEDSNQALLI 543 (714)
Q Consensus 480 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~ 543 (714)
...+.++|.+|+..|+|++|+..|+++++++|++..+ |+++|.+|..+|++++|+++|++++++
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4455666666666666666666666666666666533 666666666666666666666666665
|
|
| >cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain | Back alignment and domain information |
|---|
Probab=98.44 E-value=5.3e-07 Score=79.96 Aligned_cols=73 Identities=15% Similarity=0.218 Sum_probs=60.8
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhCCC--cEEEEEecc-----c----------------------CcchhhhCC
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRYPS--INFLKVDID-----E----------------------SPGVAHAEN 678 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~--~~~~~vd~d-----~----------------------~~~l~~~~~ 678 (714)
.+++++.||+.||+.|....|.|+++..++.+ +.++.|..+ . ...++..|+
T Consensus 23 gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~~~ 102 (126)
T cd03012 23 GKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDYATWRAYG 102 (126)
T ss_pred CCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCchHHHHHhC
Confidence 46899999999999999999999999999963 777777531 1 234577899
Q ss_pred ccccceEEEE-eCCeEEEEEcCC
Q 005108 679 VRIVPTFKIY-KNGSRMKEIVCP 700 (714)
Q Consensus 679 v~~~Pt~~~~-~~G~~~~~~~g~ 700 (714)
|..+|+++++ ++|+++....|.
T Consensus 103 v~~~P~~~vid~~G~v~~~~~G~ 125 (126)
T cd03012 103 NQYWPALYLIDPTGNVRHVHFGE 125 (126)
T ss_pred CCcCCeEEEECCCCcEEEEEecC
Confidence 9999999888 899999998885
|
Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3. |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.42 E-value=3e-05 Score=73.76 Aligned_cols=137 Identities=14% Similarity=0.127 Sum_probs=118.3
Q ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHhccC-CCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhcc---
Q 005108 434 AYTFFVRAQIEMALGRFENAVTAAEKAGQID-PRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRF--- 509 (714)
Q Consensus 434 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--- 509 (714)
..+.+.+..++...+.|.-.+..+.+.++.+ |.++.....+ |.+..+.|+.+.|..+|+..-+.
T Consensus 177 ~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~L------------gr~~MQ~GD~k~a~~yf~~vek~~~k 244 (366)
T KOG2796|consen 177 GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGL------------GRISMQIGDIKTAEKYFQDVEKVTQK 244 (366)
T ss_pred HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHH------------HHHHHhcccHHHHHHHHHHHHHHHhh
Confidence 4567888999999999999999999999988 4555555544 89999999999999999954432
Q ss_pred -C--CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCH
Q 005108 510 -D--PSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDN 582 (714)
Q Consensus 510 -~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~ 582 (714)
+ ..+..+..+.+.+|.-.+++.+|...|.+++..+|.++.+..+.|.|+.-+|+..+|++.++.+++..|...
T Consensus 245 L~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 245 LDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHY 320 (366)
T ss_pred hhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence 2 234567778889999999999999999999999999999999999999999999999999999999999754
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.41 E-value=4.9e-05 Score=81.55 Aligned_cols=285 Identities=14% Similarity=0.124 Sum_probs=147.7
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHH------HHhc----CCCc-HHHHHHHHHHHHHcCCHHHHHHHHHhhcCCCChHHHH
Q 005108 278 FRSNRAAALTGLGRIGEAVKECEE------AVRL----DPNY-WRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVH 346 (714)
Q Consensus 278 ~~~~la~~~~~~g~~~~A~~~~~~------al~~----~p~~-~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 346 (714)
.|-.-|.+|.+..++++|+++|++ ++++ .|.. ...-...|.-+.+.|+++.|+.+|-++-.
T Consensus 663 lydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~-------- 734 (1636)
T KOG3616|consen 663 LYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANC-------- 734 (1636)
T ss_pred HHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhh--------
Confidence 344456666677778888888764 3332 2322 23334567778888999999998865521
Q ss_pred HHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHhhcccc------CCCCCC
Q 005108 347 RLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPK------IEPSTV 420 (714)
Q Consensus 347 ~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~------~~p~~~ 420 (714)
...........++|.+|+.+++..-.... ...+|-.++.-|...|+|+.|.++|.++-. +.....
T Consensus 735 -------~~kaieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~~~~dai~my~k~~ 805 (1636)
T KOG3616|consen 735 -------LIKAIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEADLFKDAIDMYGKAG 805 (1636)
T ss_pred -------HHHHHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcchhHHHHHHHhccc
Confidence 11111223344555555555544333221 122333344555555555555554443311 000000
Q ss_pred Cchh-----hhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHh-----HHHH---------H
Q 005108 421 SSSQ-----TRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNN-----VKLV---------A 481 (714)
Q Consensus 421 ~~~~-----~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~-----l~~~---------~ 481 (714)
...+ .++.+.-.....|...+.-+-..|+|.+|..+|-..- .|+.....+.... ++.+ +
T Consensus 806 kw~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~--~p~~aiqmydk~~~~ddmirlv~k~h~d~l~d 883 (1636)
T KOG3616|consen 806 KWEDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIG--EPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHD 883 (1636)
T ss_pred cHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEcc--CchHHHHHHHhhCcchHHHHHHHHhChhhhhH
Confidence 0000 0000001124456677777788888888887764321 2322221111100 1222 2
Q ss_pred HHHHHHhHHhhCcCHHHHHHHHHHhhccC------CC-----------------CH--HHHHH---------HHHHHHHh
Q 005108 482 RARARGNDLFKSERFTEACQAYGEGLRFD------PS-----------------NS--VLYCN---------RAACWFKL 527 (714)
Q Consensus 482 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~------p~-----------------~~--~~~~~---------la~~~~~~ 527 (714)
..+..|.-|...|+...|...|-++-... .. +. .+.+. -..++.+.
T Consensus 884 t~~~f~~e~e~~g~lkaae~~flea~d~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksiggdaavkllnk~ 963 (1636)
T KOG3616|consen 884 THKHFAKELEAEGDLKAAEEHFLEAGDFKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLLNKH 963 (1636)
T ss_pred HHHHHHHHHHhccChhHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHHHHHHhh
Confidence 23456788888899999998887654321 00 00 00010 01233445
Q ss_pred CCHHHHHHHH------HHHHH-----hCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Q 005108 528 GQWERSVEDS------NQALL-----IQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDD 581 (714)
Q Consensus 528 g~~~~A~~~~------~~al~-----~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~ 581 (714)
|..+.|+... +-+.+ ....-..++..++..+...|++++|-+.|-++++++.-+
T Consensus 964 gll~~~id~a~d~~afd~afdlari~~k~k~~~vhlk~a~~ledegk~edaskhyveaiklntyn 1028 (1636)
T KOG3616|consen 964 GLLEAAIDFAADNCAFDFAFDLARIAAKDKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLNTYN 1028 (1636)
T ss_pred hhHHHHhhhhhcccchhhHHHHHHHhhhccCccchhHHhhhhhhccchhhhhHhhHHHhhccccc
Confidence 5555555432 11111 122335788899999999999999999999999987544
|
|
| >KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.40 E-value=2e-06 Score=84.26 Aligned_cols=104 Identities=33% Similarity=0.490 Sum_probs=91.2
Q ss_pred HHHHHHhHHhhCcCHHHHHHHHHHhhccCCC----CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005108 482 RARARGNDLFKSERFTEACQAYGEGLRFDPS----NSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAAS 557 (714)
Q Consensus 482 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 557 (714)
.++..|+-|++.++|..|+..|.++|+..-. +..+|.|+|.|...+|+|..|+..+.+++.++|.+..++++=|.|
T Consensus 83 n~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc 162 (390)
T KOG0551|consen 83 NYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKC 162 (390)
T ss_pred HHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHH
Confidence 3456699999999999999999999997433 378999999999999999999999999999999999999999999
Q ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHH
Q 005108 558 NSKLEKWADAVRDFEVLRRELPDDNEIA 585 (714)
Q Consensus 558 ~~~~g~~~eA~~~~~~al~~~p~~~~~~ 585 (714)
++.+.++++|..+.+..++++-+...+.
T Consensus 163 ~~eLe~~~~a~nw~ee~~~~d~e~K~~~ 190 (390)
T KOG0551|consen 163 LLELERFAEAVNWCEEGLQIDDEAKKAI 190 (390)
T ss_pred HHHHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence 9999999999888888777665444433
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.40 E-value=6.6e-07 Score=83.65 Aligned_cols=97 Identities=30% Similarity=0.458 Sum_probs=92.9
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 005108 241 DAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLL 320 (714)
Q Consensus 241 ~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 320 (714)
.+..+...|+.++...+|..|+.+|.++|.++|..+.+|.+++.|++++.+++.+...+.++++++|+.+.+++.+|..+
T Consensus 9 ~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~ 88 (284)
T KOG4642|consen 9 SAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWL 88 (284)
T ss_pred HHHHHHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHH
Confidence 45677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHhhc
Q 005108 321 VRLGQVENARRHLCLSG 337 (714)
Q Consensus 321 ~~~g~~~~A~~~~~~al 337 (714)
.....|++|+..+.++.
T Consensus 89 l~s~~~~eaI~~Lqra~ 105 (284)
T KOG4642|consen 89 LQSKGYDEAIKVLQRAY 105 (284)
T ss_pred HhhccccHHHHHHHHHH
Confidence 99999999999998884
|
|
| >PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins | Back alignment and domain information |
|---|
Probab=98.40 E-value=7.2e-07 Score=81.44 Aligned_cols=74 Identities=26% Similarity=0.374 Sum_probs=62.2
Q ss_pred CCCceEEEeecC-CCccccccchHHHHHHhhC--CCcEEEEEeccc---------------------CcchhhhCCcc--
Q 005108 627 LPGVSVVHFKSA-SNLHCKQISPYVETLCGRY--PSINFLKVDIDE---------------------SPGVAHAENVR-- 680 (714)
Q Consensus 627 ~~~~~vv~f~a~-~c~~C~~~~p~l~~l~~~~--~~~~~~~vd~d~---------------------~~~l~~~~~v~-- 680 (714)
..++++|.||+. ||++|+...|.+.++.++| .++.++.|..+. ...++++|++.
T Consensus 27 ~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 106 (146)
T PF08534_consen 27 KGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDGALAKALGVTIM 106 (146)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTSHHHHHTTCEEE
T ss_pred CCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHHhhCCCceEEechHHHHHHHhCCccc
Confidence 456889999999 9999999999999998876 348887776554 45678899998
Q ss_pred -------ccceEEEE-eCCeEEEEEcCC
Q 005108 681 -------IVPTFKIY-KNGSRMKEIVCP 700 (714)
Q Consensus 681 -------~~Pt~~~~-~~G~~~~~~~g~ 700 (714)
.+|+++++ ++|+++....|.
T Consensus 107 ~~~~~~~~~P~~~lId~~G~V~~~~~g~ 134 (146)
T PF08534_consen 107 EDPGNGFGIPTTFLIDKDGKVVYRHVGP 134 (146)
T ss_dssp CCTTTTSSSSEEEEEETTSBEEEEEESS
T ss_pred cccccCCeecEEEEEECCCEEEEEEeCC
Confidence 99987655 999999999999
|
Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A .... |
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.39 E-value=3.2e-05 Score=81.15 Aligned_cols=106 Identities=19% Similarity=0.086 Sum_probs=95.9
Q ss_pred HhHHhhCcCHHHHHHHHHHhhccCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHH
Q 005108 487 GNDLFKSERFTEACQAYGEGLRFDPSN-SVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWA 565 (714)
Q Consensus 487 g~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 565 (714)
|..+...|+...|++++..|+...|.. .....+||.++.+-|...+|-..+.+++.+.-..+-.++.+|.+|..+.+.+
T Consensus 614 glywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~ 693 (886)
T KOG4507|consen 614 GLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNIS 693 (886)
T ss_pred cceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhH
Confidence 555667899999999999999988865 4567899999999999999999999999999888899999999999999999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005108 566 DAVRDFEVLRRELPDDNEIAESLFHAQ 592 (714)
Q Consensus 566 eA~~~~~~al~~~p~~~~~~~~L~~~~ 592 (714)
.|++.|+.|++++|+++++.+.|..+.
T Consensus 694 ~a~~~~~~a~~~~~~~~~~~~~l~~i~ 720 (886)
T KOG4507|consen 694 GALEAFRQALKLTTKCPECENSLKLIR 720 (886)
T ss_pred HHHHHHHHHHhcCCCChhhHHHHHHHH
Confidence 999999999999999999998887654
|
|
| >cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source | Back alignment and domain information |
|---|
Probab=98.39 E-value=8.1e-07 Score=77.24 Aligned_cols=69 Identities=16% Similarity=0.239 Sum_probs=53.6
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhCC-CcEEEEEe---ccc-----------------CcchhhhCCccccceEE
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRYP-SINFLKVD---IDE-----------------SPGVAHAENVRIVPTFK 686 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~-~~~~~~vd---~d~-----------------~~~l~~~~~v~~~Pt~~ 686 (714)
.+++++.||++||++|+...|.++++..++. ++.++.+. .++ ..++++.|+|..+|+++
T Consensus 21 gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~P~~~ 100 (114)
T cd02967 21 GRPTLLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLASDGEKAEHQRFLKKHGLEAFPYVLSAELGMAYQVSKLPYAV 100 (114)
T ss_pred CCeEEEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEEeCCCHHHHHHHHHHhCCCCCcEEecHHHHhhcCCCCcCeEE
Confidence 4689999999999999999999999988774 46666552 111 23457788999999988
Q ss_pred EE-eCCeEEEE
Q 005108 687 IY-KNGSRMKE 696 (714)
Q Consensus 687 ~~-~~G~~~~~ 696 (714)
++ ++|+++.+
T Consensus 101 vid~~G~v~~~ 111 (114)
T cd02967 101 LLDEAGVIAAK 111 (114)
T ss_pred EECCCCeEEec
Confidence 77 78987764
|
mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit. |
| >TIGR02661 MauD methylamine dehydrogenase accessory protein MauD | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.2e-06 Score=83.55 Aligned_cols=84 Identities=14% Similarity=0.211 Sum_probs=62.9
Q ss_pred CCCceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecc--------------------cCcchhhhCCccccceEE
Q 005108 627 LPGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDID--------------------ESPGVAHAENVRIVPTFK 686 (714)
Q Consensus 627 ~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d--------------------~~~~l~~~~~v~~~Pt~~ 686 (714)
..+++++.||++||+.|+...|.+.++..++ ++.++.|..+ ...++++.|+|..+|+.+
T Consensus 73 ~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~-~~~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~~~P~~~ 151 (189)
T TIGR02661 73 PGRPTLLMFTAPSCPVCDKLFPIIKSIARAE-ETDVVMISDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVGKIPYGV 151 (189)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHhc-CCcEEEEeCCCHHHHHHHHHhcCCCcceeechhHHHHhccCCccceEE
Confidence 3457999999999999999999999988764 4555555422 144678899999999876
Q ss_pred EE-eCCeEEEEEcCCCHHHHHHHHhh
Q 005108 687 IY-KNGSRMKEIVCPSRDMLEHSVRH 711 (714)
Q Consensus 687 ~~-~~G~~~~~~~g~~~~~l~~~~~~ 711 (714)
++ ++|+++.+-...+.+.+++.++.
T Consensus 152 lID~~G~I~~~g~~~~~~~le~ll~~ 177 (189)
T TIGR02661 152 LLDQDGKIRAKGLTNTREHLESLLEA 177 (189)
T ss_pred EECCCCeEEEccCCCCHHHHHHHHHH
Confidence 65 89998876333366777777764
|
This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded. |
| >KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.36 E-value=7.6e-07 Score=95.09 Aligned_cols=93 Identities=19% Similarity=0.307 Sum_probs=80.5
Q ss_pred hHHhhhccCCCceEEEeecCCCccccccchHHHHHHhhCCC-cEEEEEecccCcchhhhCCccccceEEEEeCCeEEEEE
Q 005108 619 EQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYPS-INFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKEI 697 (714)
Q Consensus 619 e~~~~~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~-~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~~~ 697 (714)
..+...+...+..+|+|+++||++|+.+.|.+.++...+.+ +.+..||++++..++..|+|.+.||+++|..|.....+
T Consensus 38 ~~~~~~~~~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~~~~~~vd~~~~~~~~~~y~i~gfPtl~~f~~~~~~~~~ 117 (383)
T KOG0191|consen 38 SFFDFLLKDDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGKVKIGAVDCDEHKDLCEKYGIQGFPTLKVFRPGKKPIDY 117 (383)
T ss_pred ccHHHhhccCCceEEEEECCCCcchhhhchHHHHHHHHhcCceEEEEeCchhhHHHHHhcCCccCcEEEEEcCCCceeec
Confidence 34445566788999999999999999999999999888876 88999999999999999999999999999999666777
Q ss_pred cCC-CHHHHHHHHhh
Q 005108 698 VCP-SRDMLEHSVRH 711 (714)
Q Consensus 698 ~g~-~~~~l~~~~~~ 711 (714)
.|. +.+.+.+++..
T Consensus 118 ~~~~~~~~~~~~~~~ 132 (383)
T KOG0191|consen 118 SGPRNAESLAEFLIK 132 (383)
T ss_pred cCcccHHHHHHHHHH
Confidence 777 77888777654
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.36 E-value=9.9e-06 Score=71.11 Aligned_cols=108 Identities=19% Similarity=0.265 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCC
Q 005108 434 AYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSN 513 (714)
Q Consensus 434 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~ 513 (714)
...++..|...+..|+|++|++.|+......|...-+-... ..++.+|++.+++++|+..+++-++++|.+
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAq---------L~l~yayy~~~~y~~A~a~~~rFirLhP~h 80 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQ---------LDLAYAYYKQGDYEEAIAAYDRFIRLHPTH 80 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHH---------HHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Confidence 56789999999999999999999999998888664432221 134999999999999999999999999987
Q ss_pred ---HHHHHHHHHHHHHhCC---------------HHHHHHHHHHHHHhCCCCHHH
Q 005108 514 ---SVLYCNRAACWFKLGQ---------------WERSVEDSNQALLIQPNYTKA 550 (714)
Q Consensus 514 ---~~~~~~la~~~~~~g~---------------~~~A~~~~~~al~~~p~~~~~ 550 (714)
..+++.+|.+++.+.. ..+|...|++.++..|+...+
T Consensus 81 p~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya 135 (142)
T PF13512_consen 81 PNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYA 135 (142)
T ss_pred CCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence 4788999999999887 899999999999999997643
|
|
| >cd02958 UAS UAS family; UAS is a domain of unknown function | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.3e-06 Score=75.81 Aligned_cols=91 Identities=18% Similarity=0.174 Sum_probs=70.1
Q ss_pred hhhccCCCceEEEeecCCCccccccchH-H--HHHHhhC-CCcEEEEEecc--cCcchhhhCCccccceEEEE-e-CCeE
Q 005108 622 RAAVSLPGVSVVHFKSASNLHCKQISPY-V--ETLCGRY-PSINFLKVDID--ESPGVAHAENVRIVPTFKIY-K-NGSR 693 (714)
Q Consensus 622 ~~~i~~~~~~vv~f~a~~c~~C~~~~p~-l--~~l~~~~-~~~~~~~vd~d--~~~~l~~~~~v~~~Pt~~~~-~-~G~~ 693 (714)
..+....+.++|+|+++||+.|+.+... + .++.+.+ .++.++.+|++ +..+++..|++.++|+++++ . +|+.
T Consensus 11 ~~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i~~~~g~~ 90 (114)
T cd02958 11 QEAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSSEGQRFLQSYKVDKYPHIAIIDPRTGEV 90 (114)
T ss_pred HHHHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCccHHHHHHHhCccCCCeEEEEeCccCcE
Confidence 3444557799999999999999987642 2 1222222 24667788887 45578999999999999888 5 8999
Q ss_pred EEEEcCC-CHHHHHHHHhhh
Q 005108 694 MKEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 694 ~~~~~g~-~~~~l~~~~~~~ 712 (714)
+.++.|. +++++...|+++
T Consensus 91 l~~~~G~~~~~~f~~~L~~~ 110 (114)
T cd02958 91 LKVWSGNITPEDLLSQLIEF 110 (114)
T ss_pred eEEEcCCCCHHHHHHHHHHH
Confidence 9999999 999998888764
|
Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP), |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=98.34 E-value=7.3e-07 Score=71.53 Aligned_cols=65 Identities=17% Similarity=0.255 Sum_probs=50.5
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh----CCC---CHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Q 005108 513 NSVLYCNRAACWFKLGQWERSVEDSNQALLI----QPN---YTKALLRRAASNSKLEKWADAVRDFEVLRRE 577 (714)
Q Consensus 513 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~---~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 577 (714)
-..++.++|.+|..+|+|++|+++|++++++ .++ ...++.++|.++..+|++++|+++|++++++
T Consensus 4 ~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 4 TANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3567888888888888888888888888864 112 2467788888888888888888888888875
|
... |
| >TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family | Back alignment and domain information |
|---|
Probab=98.34 E-value=1e-06 Score=69.72 Aligned_cols=69 Identities=22% Similarity=0.318 Sum_probs=56.0
Q ss_pred EEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCcc----hhhhCCccccceEEEEeCCeEEEEEcCCCHHHHHH
Q 005108 632 VVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPG----VAHAENVRIVPTFKIYKNGSRMKEIVCPSRDMLEH 707 (714)
Q Consensus 632 vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~----l~~~~~v~~~Pt~~~~~~G~~~~~~~g~~~~~l~~ 707 (714)
+..|+++||+.|+.+.+.+++ .++.+..+|+++.+. +.+.+++.++|++++. |+. +.|++.+.|++
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~-----~~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~--~~~---~~g~~~~~i~~ 71 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTS-----KGIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIG--HKI---IVGFDPEKLDQ 71 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHH-----CCCeEEEEeccCCHHHHHHHHHHhCCCcccEEEEC--CEE---EeeCCHHHHHH
Confidence 467999999999999988865 357889999987665 4566999999999874 653 77888899988
Q ss_pred HHh
Q 005108 708 SVR 710 (714)
Q Consensus 708 ~~~ 710 (714)
+|+
T Consensus 72 ~i~ 74 (74)
T TIGR02196 72 LLE 74 (74)
T ss_pred HhC
Confidence 874
|
This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system. |
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.34 E-value=0.0019 Score=67.94 Aligned_cols=72 Identities=8% Similarity=-0.009 Sum_probs=64.8
Q ss_pred hhcCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Q 005108 233 NRGGICGGDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRL 305 (714)
Q Consensus 233 ~~~~~~p~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 305 (714)
.....+|.|.+.|+.+...+..+ -++++.+.|++.+...|..+.+|.......+...+|+.-...|.+++..
T Consensus 11 ~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk 82 (656)
T KOG1914|consen 11 ERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVK 82 (656)
T ss_pred HHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 33457899999999998877666 9999999999999999999999999999999999999999999999864
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.32 E-value=2.5e-05 Score=73.00 Aligned_cols=204 Identities=13% Similarity=0.050 Sum_probs=132.0
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHH
Q 005108 363 KVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQ 442 (714)
Q Consensus 363 ~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~ 442 (714)
..+.+++|.++|.++ ++.|...++|..|-..|.++-+..-... ....-+..|...+.
T Consensus 26 g~~k~eeAadl~~~A---------------an~yklaK~w~~AG~aflkaA~~h~k~~--------skhDaat~YveA~~ 82 (288)
T KOG1586|consen 26 GSNKYEEAAELYERA---------------ANMYKLAKNWSAAGDAFLKAADLHLKAG--------SKHDAATTYVEAAN 82 (288)
T ss_pred CCcchHHHHHHHHHH---------------HHHHHHHHhHHHHHHHHHHHHHHHHhcC--------CchhHHHHHHHHHH
Confidence 345788888887764 3444444555555555554433221110 00001333444444
Q ss_pred HHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhC-cCHHHHHHHHHHhhccCCCC------HH
Q 005108 443 IEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKS-ERFTEACQAYGEGLRFDPSN------SV 515 (714)
Q Consensus 443 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~-g~~~~A~~~~~~al~~~p~~------~~ 515 (714)
+| +..+.++|+.++++++++.-+-...... +.....+|.+|... .++++|+.+|+++-+....+ -.
T Consensus 83 cy-kk~~~~eAv~cL~~aieIyt~~Grf~~a------Ak~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANK 155 (288)
T KOG1586|consen 83 CY-KKVDPEEAVNCLEKAIEIYTDMGRFTMA------AKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANK 155 (288)
T ss_pred Hh-hccChHHHHHHHHHHHHHHHhhhHHHHH------HhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHH
Confidence 44 5569999999999999875443322211 12234568888766 89999999999998865433 34
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHH--
Q 005108 516 LYCNRAACWFKLGQWERSVEDSNQALLIQPNYT-------KALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAE-- 586 (714)
Q Consensus 516 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-------~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~-- 586 (714)
.+...|..-..+++|.+|+..|++.....-++. ..++.-|.|++-..+.-.+...+++..+++|...+.++
T Consensus 156 C~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsREck 235 (288)
T KOG1586|consen 156 CLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSRECK 235 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccHHHH
Confidence 566677777889999999999999987655543 34566788888888988999999999999997765543
Q ss_pred HHHHHHHHhh
Q 005108 587 SLFHAQVSLK 596 (714)
Q Consensus 587 ~L~~~~~~l~ 596 (714)
.|..+...+.
T Consensus 236 flk~L~~aie 245 (288)
T KOG1586|consen 236 FLKDLLDAIE 245 (288)
T ss_pred HHHHHHHHHh
Confidence 4444444443
|
|
| >COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.30 E-value=6.1e-07 Score=95.57 Aligned_cols=99 Identities=16% Similarity=0.253 Sum_probs=79.9
Q ss_pred ehhhhHHhhhccCCC--ceEEEeecCCCccccccchHHH---HHHhhCCCcEEEEEecccCc----chhhhCCccccceE
Q 005108 615 VSSLEQFRAAVSLPG--VSVVHFKSASNLHCKQISPYVE---TLCGRYPSINFLKVDIDESP----GVAHAENVRIVPTF 685 (714)
Q Consensus 615 i~~~e~~~~~i~~~~--~~vv~f~a~~c~~C~~~~p~l~---~l~~~~~~~~~~~vd~d~~~----~l~~~~~v~~~Pt~ 685 (714)
+....+.++.+.+.. +++++|+|+||..|+.+.+..- +...+.+++.++++|+..+. ++.++||+.++|++
T Consensus 459 ~s~~~~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~~~p~~~~lLk~~~~~G~P~~ 538 (569)
T COG4232 459 ISPLAELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTANDPAITALLKRLGVFGVPTY 538 (569)
T ss_pred cCCHHHHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecCCCHHHHHHHHHcCCCCCCEE
Confidence 344445666665544 9999999999999999998653 34445678999999998743 46789999999999
Q ss_pred EEE-eCCeEEEEEcCC-CHHHHHHHHhhhc
Q 005108 686 KIY-KNGSRMKEIVCP-SRDMLEHSVRHYS 713 (714)
Q Consensus 686 ~~~-~~G~~~~~~~g~-~~~~l~~~~~~~~ 713 (714)
++| .+|++..-+.|+ +.+.+.+.|++..
T Consensus 539 ~ff~~~g~e~~~l~gf~~a~~~~~~l~~~~ 568 (569)
T COG4232 539 LFFGPQGSEPEILTGFLTADAFLEHLERAA 568 (569)
T ss_pred EEECCCCCcCcCCcceecHHHHHHHHHHhc
Confidence 999 599988889999 9999999998753
|
|
| >PLN02399 phospholipid hydroperoxide glutathione peroxidase | Back alignment and domain information |
|---|
Probab=98.30 E-value=2e-06 Score=83.71 Aligned_cols=85 Identities=14% Similarity=0.096 Sum_probs=65.3
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhCC--CcEEEEEeccc-------C-cc---hh-hh----CC-----------
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRYP--SINFLKVDIDE-------S-PG---VA-HA----EN----------- 678 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~--~~~~~~vd~d~-------~-~~---l~-~~----~~----------- 678 (714)
.++++|.||+.||+.|....|.|.++.++|. ++.++.|++++ . ++ .+ +. |.
T Consensus 99 GK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d~~~~~e~~s~~ei~~f~~~~~g~~fPvl~~~D~~G~~ 178 (236)
T PLN02399 99 GKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKQFACTRFKAEFPIFDKVDVNGPS 178 (236)
T ss_pred CCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCccccccCCCcch
Confidence 4689999999999999999999999999986 48888887531 1 11 11 11 11
Q ss_pred -------------------ccccceEEEE-eCCeEEEEEcCC-CHHHHHHHHhhh
Q 005108 679 -------------------VRIVPTFKIY-KNGSRMKEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 679 -------------------v~~~Pt~~~~-~~G~~~~~~~g~-~~~~l~~~~~~~ 712 (714)
|+..|+.+++ ++|+++.++.|. +.++|+..|+++
T Consensus 179 ~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~G~~~~~~le~~I~~l 233 (236)
T PLN02399 179 TAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYPPTTSPFQIEKDIQKL 233 (236)
T ss_pred hhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEECCCCCHHHHHHHHHHH
Confidence 2335776666 999999999999 999999999875
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.30 E-value=8e-05 Score=67.25 Aligned_cols=148 Identities=18% Similarity=0.174 Sum_probs=117.3
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHhhcccc-CCCCCCCchhhhhhhhhhhHHHHHHHHHHH
Q 005108 366 DWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPK-IEPSTVSSSQTRFFGMLSEAYTFFVRAQIE 444 (714)
Q Consensus 366 ~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~~~~~~~~~~~~~~~la~~~ 444 (714)
|.+..+....+.+...|. ..-.+.++..+.++|++.+|...|++++. +.-.+ ...+..+++..
T Consensus 71 dP~R~~Rea~~~~~~ApT--vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d--------------~a~lLglA~Aq 134 (251)
T COG4700 71 DPERHLREATEELAIAPT--VQNRYRLANALAELGRYHEAVPHYQQALSGIFAHD--------------AAMLLGLAQAQ 134 (251)
T ss_pred ChhHHHHHHHHHHhhchh--HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCC--------------HHHHHHHHHHH
Confidence 444444555555555554 33345689999999999999999999875 33343 77889999999
Q ss_pred HHhCcHHHHHHHHHHHhccCCCC--HHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHH
Q 005108 445 MALGRFENAVTAAEKAGQIDPRN--VEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAA 522 (714)
Q Consensus 445 ~~~g~~~~A~~~~~~al~~~p~~--~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 522 (714)
+..+++.+|...+++..+.+|.. ++....+ |..|...|++++|...|+.++...| .+......+.
T Consensus 135 fa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~------------aR~laa~g~~a~Aesafe~a~~~yp-g~~ar~~Y~e 201 (251)
T COG4700 135 FAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLF------------ARTLAAQGKYADAESAFEVAISYYP-GPQARIYYAE 201 (251)
T ss_pred HhhccHHHHHHHHHHHhhcCCccCCCCchHHH------------HHHHHhcCCchhHHHHHHHHHHhCC-CHHHHHHHHH
Confidence 99999999999999999988754 4444444 8999999999999999999999987 5778888899
Q ss_pred HHHHhCCHHHHHHHHHHHHH
Q 005108 523 CWFKLGQWERSVEDSNQALL 542 (714)
Q Consensus 523 ~~~~~g~~~~A~~~~~~al~ 542 (714)
.+.++|+.++|...+....+
T Consensus 202 ~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 202 MLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHHHhcchhHHHHHHHHHHH
Confidence 99999998888877665543
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=98.26 E-value=4.5e-05 Score=79.44 Aligned_cols=57 Identities=18% Similarity=0.117 Sum_probs=39.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Q 005108 247 RMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRL 305 (714)
Q Consensus 247 ~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 305 (714)
.+-....+..+.+.-++...+|++++|+.+.+|..+|.- ...-..+|.++|+++++.
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkA 229 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEE--EASTIVEAEELLRQAVKA 229 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccc--cccCHHHHHHHHHHHHHH
Confidence 444556677788888888888888888887777776642 223467777777777664
|
The molecular function of this protein is uncertain. |
| >KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.1e-06 Score=80.43 Aligned_cols=86 Identities=20% Similarity=0.325 Sum_probs=71.4
Q ss_pred ehhhhHHhhhccC--CCceEEEeecCCCccccccchHHHHHHhhCC--CcEEEEEecccCcchhhhCCcc------ccce
Q 005108 615 VSSLEQFRAAVSL--PGVSVVHFKSASNLHCKQISPYVETLCGRYP--SINFLKVDIDESPGVAHAENVR------IVPT 684 (714)
Q Consensus 615 i~~~e~~~~~i~~--~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~--~~~~~~vd~d~~~~l~~~~~v~------~~Pt 684 (714)
.+..+.+++.+.. ...+++.|++.|.+.|+...|.+.+|..+|. .++|.+||+--.++.+++|+|. .+||
T Consensus 129 f~~~q~~deel~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGrfpd~a~kfris~s~~srQLPT 208 (265)
T KOG0914|consen 129 FTNMQLEDEELDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGRFPDVAAKFRISLSPGSRQLPT 208 (265)
T ss_pred ecchhhHHHHhccCCceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeeccCcChHHheeeccCcccccCCe
Confidence 3344445544433 3478999999999999999999999999994 5999999999999999999775 8899
Q ss_pred EEEEeCCeEEEEEcCC
Q 005108 685 FKIYKNGSRMKEIVCP 700 (714)
Q Consensus 685 ~~~~~~G~~~~~~~g~ 700 (714)
+++|++|+++.|.-..
T Consensus 209 ~ilFq~gkE~~RrP~v 224 (265)
T KOG0914|consen 209 YILFQKGKEVSRRPDV 224 (265)
T ss_pred EEEEccchhhhcCccc
Confidence 9999999998876554
|
|
| >KOG2300 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.0065 Score=63.14 Aligned_cols=331 Identities=15% Similarity=0.063 Sum_probs=197.2
Q ss_pred HHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhC---CCC----HHHHHHHHHHHHHCC-CHHHHHHHHHHHHhcCCCc---
Q 005108 242 AEELKRMGNELY-RKGCFGEALSMYDKAISLA---PRN----AAFRSNRAAALTGLG-RIGEAVKECEEAVRLDPNY--- 309 (714)
Q Consensus 242 ~~~~~~~g~~~~-~~g~~~~Al~~~~~al~~~---p~~----~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~--- 309 (714)
+.....+|..++ ...+++-|...+++++.+. |.. ..++..++.+|.... .+..|...+++++++....
T Consensus 46 art~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~w 125 (629)
T KOG2300|consen 46 ARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYW 125 (629)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchh
Confidence 455666777654 5789999999999998763 222 456778899999888 7889999999999986554
Q ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHH------------------HHHHH---------------
Q 005108 310 -WRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQV------------------VEKHL--------------- 355 (714)
Q Consensus 310 -~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~------------------~~~~~--------------- 355 (714)
-...+.|+.++.-..++..|++.+.--....++.....+.. +....
T Consensus 126 sckllfQLaql~~idkD~~sA~elLavga~sAd~~~~~ylr~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~ 205 (629)
T KOG2300|consen 126 SCKLLFQLAQLHIIDKDFPSALELLAVGAESADHICFPYLRMLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKT 205 (629)
T ss_pred hHHHHHHHHHHHhhhccchhHHHHHhccccccchhhhHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCChH
Confidence 35677889999999999999988653322222211111100 00000
Q ss_pred ----------H-HhHHHHHcCCHHHHHHH---HHHHHHcC-C-----------CCCHHHHHH------HHHHH-------
Q 005108 356 ----------S-KCTDARKVGDWKSALRE---GDAAIAAG-A-----------DFSPQLSMC------RVEAL------- 396 (714)
Q Consensus 356 ----------~-~a~~~~~~g~~~~Al~~---~~~al~~~-p-----------~~~~~~~~~------la~~~------- 396 (714)
. ....|...|+...+... +++.+... + ...+..+.. -+.+|
T Consensus 206 ~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqtist~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hs 285 (629)
T KOG2300|consen 206 QKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTISTSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHS 285 (629)
T ss_pred HHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHhccCCCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhh
Confidence 0 11122333444433333 33333221 1 011111100 01111
Q ss_pred HHcCCHHHHHHHhhccccCCCCCCCch-hhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHH
Q 005108 397 LKLHQLEDAESSLSNIPKIEPSTVSSS-QTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLN 475 (714)
Q Consensus 397 ~~~g~~~~A~~~~~~al~~~p~~~~~~-~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 475 (714)
+..|-+++|.++-++++.......... ..+...++ ....+-.+..+-.-.|++.+|++....+.+..-..+.... .
T Consensus 286 m~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~-km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~L--l 362 (629)
T KOG2300|consen 286 MPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMF-KMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLL--L 362 (629)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHH-HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHH--H
Confidence 234556677776666665432221111 11222222 2223455666777789999999998887764333322110 0
Q ss_pred hHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCC-C--HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC-----
Q 005108 476 NVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPS-N--SVLYCNRAACWFKLGQWERSVEDSNQALLIQPNY----- 547 (714)
Q Consensus 476 ~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----- 547 (714)
+...+.-..-+|......+.++.|...|..+++.... + +.+..++|..|...|+-+.-.+.++. +.|.+
T Consensus 363 r~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~---i~p~nt~s~s 439 (629)
T KOG2300|consen 363 RAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDL---IGPLNTNSLS 439 (629)
T ss_pred HHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHh---cCCCCCCcch
Confidence 0111112223477788889999999999999987433 2 34556789999998876554444433 45553
Q ss_pred -----HHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Q 005108 548 -----TKALLRRAASNSKLEKWADAVRDFEVLRREL 578 (714)
Q Consensus 548 -----~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 578 (714)
..+++..|...+.++++.||...+.+.++..
T Consensus 440 sq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma 475 (629)
T KOG2300|consen 440 SQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA 475 (629)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence 2567888888899999999999999999886
|
|
| >KOG2300 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.0042 Score=64.47 Aligned_cols=325 Identities=13% Similarity=0.011 Sum_probs=199.0
Q ss_pred HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHhc-----------
Q 005108 242 AEELKRMGNELYRKG-CFGEALSMYDKAISLAPRNA----AFRSNRAAALTGLGRIGEAVKECEEAVRL----------- 305 (714)
Q Consensus 242 ~~~~~~~g~~~~~~g-~~~~Al~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~----------- 305 (714)
-++...++..|.+.. .+..|...+.+++++....+ ...+.++..+.-..++..|++.+.--.+.
T Consensus 88 f~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elLavga~sAd~~~~~ylr~ 167 (629)
T KOG2300|consen 88 FQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLAVGAESADHICFPYLRM 167 (629)
T ss_pred hHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHhccccccchhhhHHHHH
Confidence 356667788887776 78889999999999876664 34566788888888888877764221110
Q ss_pred ------------CCCc---------------------------HHHHHHHHHH-HHHcCCHHHHHHHHHhh---cCCCCh
Q 005108 306 ------------DPNY---------------------------WRAHQRLGSL-LVRLGQVENARRHLCLS---GQQADP 342 (714)
Q Consensus 306 ------------~p~~---------------------------~~a~~~la~~-~~~~g~~~~A~~~~~~a---l~~~~~ 342 (714)
.++. ...|..+-.+ |...|+...+...+++. ++...+
T Consensus 168 ~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqtist 247 (629)
T KOG2300|consen 168 LFTLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTIST 247 (629)
T ss_pred HHHHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHhccCC
Confidence 0110 0112222222 22334444443333322 221111
Q ss_pred ---------------HHHHHHH--HHHH--HHHHhHHHHHcCCHHHHHHHHHHHHHcCCC------CC-------HHHHH
Q 005108 343 ---------------TEVHRLQ--VVEK--HLSKCTDARKVGDWKSALREGDAAIAAGAD------FS-------PQLSM 390 (714)
Q Consensus 343 ---------------~~~~~l~--~~~~--~~~~a~~~~~~g~~~~Al~~~~~al~~~p~------~~-------~~~~~ 390 (714)
.....+. .+.. ++.-..--+..|.+++|.++-+++|..-.. .. ..++-
T Consensus 248 ~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE 327 (629)
T KOG2300|consen 248 SSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLE 327 (629)
T ss_pred CCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHH
Confidence 0001110 0101 111111123567788888888888765221 11 12233
Q ss_pred HHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCC-CCHH
Q 005108 391 CRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDP-RNVE 469 (714)
Q Consensus 391 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~ 469 (714)
.++.|-.-.|++.+|++.+..+.+.....+. ...-....+.+++.+|.....-+.+++|...|..|.+.-. .+..
T Consensus 328 ~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~----~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~ 403 (629)
T KOG2300|consen 328 HIVMCRLVRGDYVEALEEIVDMKNWCTRFPT----PLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQ 403 (629)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHhCCc----hHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHH
Confidence 4667778889999999888877654322211 1122234577889999999999999999999999987543 3333
Q ss_pred HHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCC----------HHHHHHHHHHHHHhCCHHHHHHHHHH
Q 005108 470 VAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSN----------SVLYCNRAACWFKLGQWERSVEDSNQ 539 (714)
Q Consensus 470 ~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~----------~~~~~~la~~~~~~g~~~~A~~~~~~ 539 (714)
+...+ ++|..|...++-+.-.+.++. +.|.+ ..+++..|...+.++++.||...+.+
T Consensus 404 a~~nl----------nlAi~YL~~~~~ed~y~~ld~---i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e 470 (629)
T KOG2300|consen 404 AFCNL----------NLAISYLRIGDAEDLYKALDL---IGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRE 470 (629)
T ss_pred HHHHH----------hHHHHHHHhccHHHHHHHHHh---cCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 33333 568999998876655554443 34442 46777888889999999999999999
Q ss_pred HHHhCCC------CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHH
Q 005108 540 ALLIQPN------YTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNE 583 (714)
Q Consensus 540 al~~~p~------~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~ 583 (714)
.++.... ..-.+..|+.+..-.|+..++.+...-++++...-++
T Consensus 471 ~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~D 520 (629)
T KOG2300|consen 471 TLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPD 520 (629)
T ss_pred HHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCC
Confidence 9987511 1234567788889999999999998888776544333
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=98.23 E-value=8.2e-06 Score=73.82 Aligned_cols=96 Identities=18% Similarity=0.167 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHH---hhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHH
Q 005108 450 FENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDL---FKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFK 526 (714)
Q Consensus 450 ~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~---~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 526 (714)
|+.|.+.++.....+|.+.+.+...... +..++..- .....+++|+.-|+++|.++|+...+++++|.+|..
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~A-----LLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts 81 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGA-----LLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTS 81 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHH-----HHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHH-----HHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 6889999999999999999988766221 11111110 112457889999999999999999999999999987
Q ss_pred hCC-----------HHHHHHHHHHHHHhCCCCHHH
Q 005108 527 LGQ-----------WERSVEDSNQALLIQPNYTKA 550 (714)
Q Consensus 527 ~g~-----------~~~A~~~~~~al~~~p~~~~~ 550 (714)
++. |++|.++|++|...+|++...
T Consensus 82 ~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y 116 (186)
T PF06552_consen 82 LAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELY 116 (186)
T ss_dssp HHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHH
T ss_pred HHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHH
Confidence 653 889999999999999998643
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.23 E-value=1.6e-06 Score=76.60 Aligned_cols=68 Identities=15% Similarity=0.274 Sum_probs=55.9
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhCC----CcEEEEEeccc-------------------------CcchhhhCC
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRYP----SINFLKVDIDE-------------------------SPGVAHAEN 678 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~----~~~~~~vd~d~-------------------------~~~l~~~~~ 678 (714)
++++.++|.|.||++|+.+.|.+.++.++.. .+.++.|+.|. .+++...|+
T Consensus 33 gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~ky~ 112 (157)
T KOG2501|consen 33 GKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEKYE 112 (157)
T ss_pred CcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHhcc
Confidence 4688999999999999999999999887762 37777777664 345677999
Q ss_pred ccccceEEEE-eCCeEEE
Q 005108 679 VRIVPTFKIY-KNGSRMK 695 (714)
Q Consensus 679 v~~~Pt~~~~-~~G~~~~ 695 (714)
|.+||+++++ .+|+.+.
T Consensus 113 v~~iP~l~i~~~dG~~v~ 130 (157)
T KOG2501|consen 113 VKGIPALVILKPDGTVVT 130 (157)
T ss_pred cCcCceeEEecCCCCEeh
Confidence 9999998777 8898775
|
|
| >PTZ00056 glutathione peroxidase; Provisional | Back alignment and domain information |
|---|
Probab=98.22 E-value=3.1e-06 Score=81.01 Aligned_cols=85 Identities=11% Similarity=0.119 Sum_probs=62.6
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhCC--CcEEEEEeccc-------Ccc----hhhh------------------
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRYP--SINFLKVDIDE-------SPG----VAHA------------------ 676 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~--~~~~~~vd~d~-------~~~----l~~~------------------ 676 (714)
.+++++.||++||++|....|.|+++..+|. ++.++.|++++ .++ .++.
T Consensus 39 Gkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~d~~e~~~~f~~~~~~~fpvl~d~~v~g~~~ 118 (199)
T PTZ00056 39 NKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTSQFLNQEFPNTKDIRKFNDKNKIKYNFFEPIEVNGENT 118 (199)
T ss_pred CCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecchhccCCCCCCHHHHHHHHHHcCCCceeeeeeeccCCcc
Confidence 4689999999999999999999999999985 48888887531 111 1222
Q ss_pred --------------CCc----cccc----eEEEEeCCeEEEEEcCC-CHHHHHHHHhhh
Q 005108 677 --------------ENV----RIVP----TFKIYKNGSRMKEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 677 --------------~~v----~~~P----t~~~~~~G~~~~~~~g~-~~~~l~~~~~~~ 712 (714)
|.+ ..+| ||+|-++|+++.++.|. +.+.|+..|+.+
T Consensus 119 ~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~~~g~~~~~~l~~~I~~l 177 (199)
T PTZ00056 119 HELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAYFSPRTEPLELEKKIAEL 177 (199)
T ss_pred CHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEEEeCCCCCHHHHHHHHHHH
Confidence 221 1233 44555999999999998 888888888764
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.011 Score=61.25 Aligned_cols=138 Identities=12% Similarity=-0.031 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 005108 243 EELKRMGNELYRKGCFGEALSMYDKAISLAPRNA-----AFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLG 317 (714)
Q Consensus 243 ~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la 317 (714)
..+...|-.+.+++++.+|.+.|.++.+...+.+ +++..+..-.+-+.+.+.-...+...-+..|.......-.|
T Consensus 7 ~llc~Qgf~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF~~ 86 (549)
T PF07079_consen 7 YLLCFQGFILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLFKA 86 (549)
T ss_pred HHHHHhhHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 3456789999999999999999999988765553 34444444444556677666666666677788888888899
Q ss_pred HHHHHcCCHHHHHHHHHhhcCC---C-----ChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHc
Q 005108 318 SLLVRLGQVENARRHLCLSGQQ---A-----DPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAA 380 (714)
Q Consensus 318 ~~~~~~g~~~~A~~~~~~al~~---~-----~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~ 380 (714)
...++.+++.+|++.+...-.. . +.+....+...-.-...+.++...|.+.++...+++.+..
T Consensus 87 L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~ 157 (549)
T PF07079_consen 87 LVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIER 157 (549)
T ss_pred HHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 9999999999999988665442 1 1111111222222233567788999999999988887754
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=98.20 E-value=1.9e-06 Score=69.12 Aligned_cols=65 Identities=23% Similarity=0.333 Sum_probs=48.5
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CC----CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Q 005108 241 DAEELKRMGNELYRKGCFGEALSMYDKAISL---AP----RNAAFRSNRAAALTGLGRIGEAVKECEEAVRL 305 (714)
Q Consensus 241 ~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~---~p----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 305 (714)
-+..+..+|.+|...|+|++|+.+|++++++ .+ .-..++.++|.++..+|++++|++++++++++
T Consensus 4 ~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 4 TANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3567788888888888888888888888865 11 12567778888888888888888888888764
|
... |
| >PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A | Back alignment and domain information |
|---|
Probab=98.20 E-value=1.6e-06 Score=76.19 Aligned_cols=84 Identities=17% Similarity=0.247 Sum_probs=56.1
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCcchhhhC---CccccceEEEE-eCCeEEEEEcCCCHH
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAHAE---NVRIVPTFKIY-KNGSRMKEIVCPSRD 703 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~l~~~~---~v~~~Pt~~~~-~~G~~~~~~~g~~~~ 703 (714)
....++.|..+|||.|...-|++.++.+..|++.+-.+.+|++.++..+| |.+.||+|+++ ++|+++.+.. +-++
T Consensus 41 ~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p~i~~~~i~rd~~~el~~~~lt~g~~~IP~~I~~d~~~~~lg~wg-erP~ 119 (129)
T PF14595_consen 41 KPYNILVITETWCGDCARNVPVLAKIAEANPNIEVRIILRDENKELMDQYLTNGGRSIPTFIFLDKDGKELGRWG-ERPK 119 (129)
T ss_dssp S-EEEEEE--TT-HHHHHHHHHHHHHHHH-TTEEEEEE-HHHHHHHTTTTTT-SS--SSEEEEE-TT--EEEEEE-SS-H
T ss_pred CCcEEEEEECCCchhHHHHHHHHHHHHHhCCCCeEEEEEecCChhHHHHHHhCCCeecCEEEEEcCCCCEeEEEc-CCCH
Confidence 34678889999999999999999999999999888888888888877655 78999999999 6789888874 4344
Q ss_pred HHHHHHhhh
Q 005108 704 MLEHSVRHY 712 (714)
Q Consensus 704 ~l~~~~~~~ 712 (714)
.+.+.+.++
T Consensus 120 ~~~~~~~~~ 128 (129)
T PF14595_consen 120 EVQELVDEY 128 (129)
T ss_dssp HHH------
T ss_pred HHhhccccC
Confidence 555555543
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=98.18 E-value=5.7e-05 Score=76.81 Aligned_cols=141 Identities=14% Similarity=0.085 Sum_probs=116.2
Q ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhh-CcCHHHHHHHHHHhhccCCCC
Q 005108 435 YTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFK-SERFTEACQAYGEGLRFDPSN 513 (714)
Q Consensus 435 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~-~g~~~~A~~~~~~al~~~p~~ 513 (714)
.+|..+.....+.+..+.|..+|.+|++..+....+|... |.+.+. .++.+.|..+|+.+++..|.+
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~------------A~~E~~~~~d~~~A~~Ife~glk~f~~~ 69 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAY------------ALMEYYCNKDPKRARKIFERGLKKFPSD 69 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHH------------HHHHHHTCS-HHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHH------------HHHHHHhCCCHHHHHHHHHHHHHHCCCC
Confidence 3677788888888899999999999997766677777765 777666 566666999999999999999
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHH
Q 005108 514 SVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYT---KALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAES 587 (714)
Q Consensus 514 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~ 587 (714)
..+|......+...++.+.|...|++++..-+... .+|......-.+.|+.+.....++++.+..|++..+...
T Consensus 70 ~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~~~f 146 (280)
T PF05843_consen 70 PDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSLELF 146 (280)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 99999999999999999999999999998766654 577788888889999999999999999999996665543
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.00022 Score=74.43 Aligned_cols=171 Identities=19% Similarity=0.186 Sum_probs=117.0
Q ss_pred HCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCCC------Ch-HH-----HH------HHH
Q 005108 288 GLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQA------DP-TE-----VH------RLQ 349 (714)
Q Consensus 288 ~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~------~~-~~-----~~------~l~ 349 (714)
+..+.+.-++..++|++++|+.+.+|..||.-. ..-..+|.++|+++++.. +. .. .. .-.
T Consensus 180 RERnp~aRIkaA~eALei~pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~ 257 (539)
T PF04184_consen 180 RERNPQARIKAAKEALEINPDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNV 257 (539)
T ss_pred hcCCHHHHHHHHHHHHHhhhhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccch
Confidence 445667778888999999999999998887632 234566777777665410 00 00 00 001
Q ss_pred HHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHcCCHHHHHHHhhccccCC-CCCCCchhhhh
Q 005108 350 VVEKHLSKCTDARKVGDWKSALREGDAAIAAGAD-FSPQLSMCRVEALLKLHQLEDAESSLSNIPKIE-PSTVSSSQTRF 427 (714)
Q Consensus 350 ~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~ 427 (714)
.+.....++.+..++|+.++|++.+..+++..|. +...+..++..+++.++.|.++...+.+--++. |+.
T Consensus 258 ~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkS-------- 329 (539)
T PF04184_consen 258 LVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKS-------- 329 (539)
T ss_pred hhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCch--------
Confidence 2344566888999999999999999999998875 466788899999999999999999998864332 333
Q ss_pred hhhhhhHHHHHHHHHHHHH-hCc---------------HHHHHHHHHHHhccCCCCHHHHHHH
Q 005108 428 FGMLSEAYTFFVRAQIEMA-LGR---------------FENAVTAAEKAGQIDPRNVEVAVLL 474 (714)
Q Consensus 428 ~~~~~~~~~~~~la~~~~~-~g~---------------~~~A~~~~~~al~~~p~~~~~~~~l 474 (714)
+...+..|.+..+ .++ -..|++.+.+|++.+|.-+..+...
T Consensus 330 ------Ati~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLLe~ 386 (539)
T PF04184_consen 330 ------ATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLLEM 386 (539)
T ss_pred ------HHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhhcc
Confidence 4444444443322 111 2356788889999998887765443
|
The molecular function of this protein is uncertain. |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.00032 Score=66.24 Aligned_cols=118 Identities=11% Similarity=0.051 Sum_probs=64.6
Q ss_pred hCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhcc------CCCCHHHHHHH
Q 005108 447 LGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRF------DPSNSVLYCNR 520 (714)
Q Consensus 447 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~l 520 (714)
.-+.++|+.+|++++.+........... +.+...+.++.+..+|++|-..+.+-... .+.-...+...
T Consensus 123 nv~Pd~AlqlYqralavve~~dr~~ma~------el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ 196 (308)
T KOG1585|consen 123 NVKPDDALQLYQRALAVVEEDDRDQMAF------ELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAA 196 (308)
T ss_pred cCCHHHHHHHHHHHHHHHhccchHHHHH------HHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHH
Confidence 3455666666666654433222211111 11112367777777787777666553321 22233445555
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHhccHHHHHHHH
Q 005108 521 AACWFKLGQWERSVEDSNQALLI----QPNYTKALLRRAASNSKLEKWADAVRDF 571 (714)
Q Consensus 521 a~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~g~~~eA~~~~ 571 (714)
..+|....+|..|.++++..-++ .+++..++-+|-..| ..|+.++....+
T Consensus 197 ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 197 ILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHH
Confidence 56666677888888888887664 345556666655544 335555554443
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.0022 Score=70.19 Aligned_cols=165 Identities=14% Similarity=0.027 Sum_probs=116.1
Q ss_pred HHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHH----HhCcHHHHHHHHHHHhccCCCCHH
Q 005108 394 EALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEM----ALGRFENAVTAAEKAGQIDPRNVE 469 (714)
Q Consensus 394 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~----~~g~~~~A~~~~~~al~~~p~~~~ 469 (714)
.+.--.|+-+.+++.+.++.+...-. ..+..... ..|+.....+. .....+.|.++++...+..|+..-
T Consensus 196 ~~vGF~gdR~~GL~~L~~~~~~~~i~-----~~la~L~L--L~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~l 268 (468)
T PF10300_consen 196 SFVGFSGDRELGLRLLWEASKSENIR-----SPLAALVL--LWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSAL 268 (468)
T ss_pred hhcCcCCcHHHHHHHHHHHhccCCcc-----hHHHHHHH--HHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHH
Confidence 33445688999999999987632221 11111111 11121111121 345688999999999999998776
Q ss_pred HHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCC----CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Q 005108 470 VAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPS----NSVLYCNRAACWFKLGQWERSVEDSNQALLIQP 545 (714)
Q Consensus 470 ~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 545 (714)
..+.. |.++...|+.++|++.|++++..... ....++.++.++..+.+|++|.++|.+..+.+.
T Consensus 269 fl~~~------------gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~ 336 (468)
T PF10300_consen 269 FLFFE------------GRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESK 336 (468)
T ss_pred HHHHH------------HHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccc
Confidence 55543 99999999999999999998864322 256788899999999999999999999998654
Q ss_pred CC-HHHHHHHHHHHHHhccH-------HHHHHHHHHHHHh
Q 005108 546 NY-TKALLRRAASNSKLEKW-------ADAVRDFEVLRRE 577 (714)
Q Consensus 546 ~~-~~~~~~la~~~~~~g~~-------~eA~~~~~~al~~ 577 (714)
-. .-..|..|.|+..+++. ++|.++|.++-.+
T Consensus 337 WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 337 WSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred cHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 43 23446678889999999 7777777766544
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.11 E-value=4e-06 Score=82.79 Aligned_cols=107 Identities=20% Similarity=0.371 Sum_probs=95.7
Q ss_pred HHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccH
Q 005108 485 ARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKW 564 (714)
Q Consensus 485 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 564 (714)
..+.-.+..|.+++|++.|..+|+++|....+|..++.++.+++++..|+..|..+++++|+...-|-..+.+...+|+|
T Consensus 119 ~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~ 198 (377)
T KOG1308|consen 119 VQASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNW 198 (377)
T ss_pred HHHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhch
Confidence 34666788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005108 565 ADAVRDFEVLRRELPDDNEIAESLFHAQ 592 (714)
Q Consensus 565 ~eA~~~~~~al~~~p~~~~~~~~L~~~~ 592 (714)
++|..++..+.+++- ++++-..|..+.
T Consensus 199 e~aa~dl~~a~kld~-dE~~~a~lKeV~ 225 (377)
T KOG1308|consen 199 EEAAHDLALACKLDY-DEANSATLKEVF 225 (377)
T ss_pred HHHHHHHHHHHhccc-cHHHHHHHHHhc
Confidence 999999999999874 344444454443
|
|
| >PLN02412 probable glutathione peroxidase | Back alignment and domain information |
|---|
Probab=98.10 E-value=8.7e-06 Score=75.81 Aligned_cols=85 Identities=12% Similarity=0.082 Sum_probs=64.8
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhCC--CcEEEEEecc--------cCcch------------------------
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRYP--SINFLKVDID--------ESPGV------------------------ 673 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~--~~~~~~vd~d--------~~~~l------------------------ 673 (714)
.+++++.||+.||+.|+...|.|.++..+|. ++.++-|..+ ..+++
T Consensus 29 gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~~~~~~~~~~~~~~~~~~~~~~~~~fpvl~~~d~~g~~ 108 (167)
T PLN02412 29 GKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCNQFLGQEPGSNEEIQQTVCTRFKAEFPIFDKVDVNGKN 108 (167)
T ss_pred CCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEecccccccCCCCCHHHHHHHHHHccCCCCceEeEEeeCCCC
Confidence 3689999999999999999999999999986 4888877643 11111
Q ss_pred -hhhCC-------------ccccceEEEE-eCCeEEEEEcCC-CHHHHHHHHhhh
Q 005108 674 -AHAEN-------------VRIVPTFKIY-KNGSRMKEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 674 -~~~~~-------------v~~~Pt~~~~-~~G~~~~~~~g~-~~~~l~~~~~~~ 712 (714)
+..|+ |...|+.+++ ++|+++.++.|. +.++|+..|+.+
T Consensus 109 ~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~~g~~~~~~l~~~i~~~ 163 (167)
T PLN02412 109 TAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRYAPTTSPLKIEKDIQNL 163 (167)
T ss_pred CCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEECCCCCHHHHHHHHHHH
Confidence 11111 4446876666 999999999999 999999888764
|
|
| >KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.08 E-value=6e-06 Score=85.53 Aligned_cols=104 Identities=35% Similarity=0.501 Sum_probs=95.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 005108 242 AEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLV 321 (714)
Q Consensus 242 ~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~ 321 (714)
+..+...++.++..++|+.|+..|.+||+++|+++.++.+++.++.+.+++..|+..+.++++++|....+|+..|..+.
T Consensus 4 a~e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m 83 (476)
T KOG0376|consen 4 AEELKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVM 83 (476)
T ss_pred hhhhhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHH
Confidence 45667789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHhhcC--CCChHHH
Q 005108 322 RLGQVENARRHLCLSGQ--QADPTEV 345 (714)
Q Consensus 322 ~~g~~~~A~~~~~~al~--~~~~~~~ 345 (714)
.++.+.+|+..|++... +.++...
T Consensus 84 ~l~~~~~A~~~l~~~~~l~Pnd~~~~ 109 (476)
T KOG0376|consen 84 ALGEFKKALLDLEKVKKLAPNDPDAT 109 (476)
T ss_pred hHHHHHHHHHHHHHhhhcCcCcHHHH
Confidence 99999999999998766 4444443
|
|
| >KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.07 E-value=4.1e-05 Score=75.35 Aligned_cols=98 Identities=29% Similarity=0.378 Sum_probs=90.6
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 005108 241 DAEELKRMGNELYRKGCFGEALSMYDKAISLAPR----NAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRL 316 (714)
Q Consensus 241 ~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l 316 (714)
.++-+...|+.|++.++|..|+.+|.+.|+..-. ++..|.++|.|.+.+|+|..|+..+.+++.++|.+..++++=
T Consensus 80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~ 159 (390)
T KOG0551|consen 80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRG 159 (390)
T ss_pred HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhh
Confidence 5788889999999999999999999999997543 367899999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHhhcC
Q 005108 317 GSLLVRLGQVENARRHLCLSGQ 338 (714)
Q Consensus 317 a~~~~~~g~~~~A~~~~~~al~ 338 (714)
|.+++.+.++.+|..+.+..++
T Consensus 160 Akc~~eLe~~~~a~nw~ee~~~ 181 (390)
T KOG0551|consen 160 AKCLLELERFAEAVNWCEEGLQ 181 (390)
T ss_pred hHHHHHHHHHHHHHHHHhhhhh
Confidence 9999999999999999987754
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.005 Score=70.14 Aligned_cols=319 Identities=18% Similarity=0.078 Sum_probs=192.0
Q ss_pred cHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC----c
Q 005108 241 DAEELKRMGNELY-RKGCFGEALSMYDKAISLAPRN------AAFRSNRAAALTGLGRIGEAVKECEEAVRLDPN----Y 309 (714)
Q Consensus 241 ~~~~~~~~g~~~~-~~g~~~~Al~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~ 309 (714)
++..++.+|..++ ...++++|..++++++.+...+ ..+.+.++.++.+.+... |...++++++.... .
T Consensus 58 ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~ 136 (608)
T PF10345_consen 58 EARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSA 136 (608)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchh
Confidence 6788899999988 7789999999999998876432 334567788888888877 99999999886544 2
Q ss_pred HHHHHHH--HHHHHHcCCHHHHHHHHHhhcCC----CChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCC
Q 005108 310 WRAHQRL--GSLLVRLGQVENARRHLCLSGQQ----ADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGAD 383 (714)
Q Consensus 310 ~~a~~~l--a~~~~~~g~~~~A~~~~~~al~~----~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~ 383 (714)
+...+.+ ...+...+++..|++.++..... .++.. .+...+..+......+..+++++..++++.....
T Consensus 137 w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~-----~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~ 211 (608)
T PF10345_consen 137 WYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAV-----FVLASLSEALLHLRRGSPDDVLELLQRAIAQARS 211 (608)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHH-----HHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhh
Confidence 2222222 33333347999999999887762 23332 2233344455566777778888888777443211
Q ss_pred -------CCHH--HHHH--HHHHHHHcCCHHHHHHHhhccc---cCCCCCC-------C-chh-------------hhhh
Q 005108 384 -------FSPQ--LSMC--RVEALLKLHQLEDAESSLSNIP---KIEPSTV-------S-SSQ-------------TRFF 428 (714)
Q Consensus 384 -------~~~~--~~~~--la~~~~~~g~~~~A~~~~~~al---~~~p~~~-------~-~~~-------------~~~~ 428 (714)
..+. .+.. ...++...|+++.+...++++- +...+.. + ... ...+
T Consensus 212 ~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f 291 (608)
T PF10345_consen 212 LQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVF 291 (608)
T ss_pred cccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEE
Confidence 1121 1222 2345667777766666654432 1111110 0 000 0011
Q ss_pred hhh----hhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCH--------H----HH--HHHHhHHHHHHHHHHHhHH
Q 005108 429 GML----SEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNV--------E----VA--VLLNNVKLVARARARGNDL 490 (714)
Q Consensus 429 ~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~--------~----~~--~~l~~l~~~~~~~~~g~~~ 490 (714)
..+ ..+.+|..-+......+..++|.++++++++.-.+.. . +. ..+...-.......++.+.
T Consensus 292 ~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~ 371 (608)
T PF10345_consen 292 SWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCN 371 (608)
T ss_pred eecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 111 1233455556667777777788888888774311111 0 00 0000111122234568888
Q ss_pred hhCcCHHHHHHHHHHhhccC---CC------CHHHHHHHHHHHHHhCCHHHHHHHHH--------HHHHhCCCCH---HH
Q 005108 491 FKSERFTEACQAYGEGLRFD---PS------NSVLYCNRAACWFKLGQWERSVEDSN--------QALLIQPNYT---KA 550 (714)
Q Consensus 491 ~~~g~~~~A~~~~~~al~~~---p~------~~~~~~~la~~~~~~g~~~~A~~~~~--------~al~~~p~~~---~~ 550 (714)
+-.+++.+|....+.+.+.. |. .+.+++..|..+...|+.+.|+..|. .+....+... -+
T Consensus 372 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila 451 (608)
T PF10345_consen 372 FIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILA 451 (608)
T ss_pred HHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHH
Confidence 88999999999888776542 22 37888999999999999999999998 3333344332 33
Q ss_pred HHHHHHHHHHhccHH
Q 005108 551 LLRRAASNSKLEKWA 565 (714)
Q Consensus 551 ~~~la~~~~~~g~~~ 565 (714)
..++..++...+.-.
T Consensus 452 ~LNl~~I~~~~~~~~ 466 (608)
T PF10345_consen 452 ALNLAIILQYESSRD 466 (608)
T ss_pred HHHHHHHhHhhcccc
Confidence 456666666555433
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.0014 Score=73.44 Aligned_cols=284 Identities=14% Similarity=0.059 Sum_probs=179.0
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHhc-----CCCcHHHHHHHHHHHHHcC--
Q 005108 257 CFGEALSMYDKAISLAPRNAAFRSNRAAALTGL-----GRIGEAVKECEEAVRL-----DPNYWRAHQRLGSLLVRLG-- 324 (714)
Q Consensus 257 ~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~-----~p~~~~a~~~la~~~~~~g-- 324 (714)
+..+|..+|+.+.+. .+..+...+|.||..- .+.+.|+.+|+.+.+. .-.+..+.+.+|.+|.+..
T Consensus 227 ~~~~a~~~~~~~a~~--g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 227 ELSEAFKYYREAAKL--GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhhHHHHHHHHHHhh--cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCC
Confidence 345677777777654 3566777777777654 4778888888877651 1114557777888887743
Q ss_pred ---CHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH---
Q 005108 325 ---QVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLK--- 398 (714)
Q Consensus 325 ---~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~--- 398 (714)
+++.|+.+|.++.....+.....+..+...- . ...++..|.++|..+.+.+. ....+.++.+|..
T Consensus 305 ~~~d~~~A~~~~~~aA~~g~~~a~~~lg~~~~~g---~---~~~d~~~A~~yy~~Aa~~G~---~~A~~~la~~y~~G~g 375 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELGNPDAQYLLGVLYETG---T---KERDYRRAFEYYSLAAKAGH---ILAIYRLALCYELGLG 375 (552)
T ss_pred ccccHHHHHHHHHHHHhcCCchHHHHHHHHHHcC---C---ccccHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhCCC
Confidence 6677888888877655555443333221110 0 22467788888888887763 3344446777664
Q ss_pred -cCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHh-CcHHHHHHHHHHHhccCCCCHHHHHHHHh
Q 005108 399 -LHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMAL-GRFENAVTAAEKAGQIDPRNVEVAVLLNN 476 (714)
Q Consensus 399 -~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 476 (714)
..+.+.|..+++++.+.+.- .+.+.++..+... ++++.+...+....+..-........+.
T Consensus 376 v~r~~~~A~~~~k~aA~~g~~----------------~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~~q~~a~~l- 438 (552)
T KOG1550|consen 376 VERNLELAFAYYKKAAEKGNP----------------SAAYLLGAFYEYGVGRYDTALALYLYLAELGYEVAQSNAAYL- 438 (552)
T ss_pred cCCCHHHHHHHHHHHHHccCh----------------hhHHHHHHHHHHccccccHHHHHHHHHHHhhhhHHhhHHHHH-
Confidence 34788899999998887732 2334444433332 6677666666555443322222111100
Q ss_pred HHHHHHHHHHHhHHh-h---CcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHh----CCHHHHHHHHHHHHHhCCCCH
Q 005108 477 VKLVARARARGNDLF-K---SERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKL----GQWERSVEDSNQALLIQPNYT 548 (714)
Q Consensus 477 l~~~~~~~~~g~~~~-~---~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~p~~~ 548 (714)
........ . ..+.+.+...+.++... .+..+...++.+|..- .+++.|...|.++.... .
T Consensus 439 -------~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~--g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~ 506 (552)
T KOG1550|consen 439 -------LDQSEEDLFSRGVISTLERAFSLYSRAAAQ--GNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---A 506 (552)
T ss_pred -------HHhccccccccccccchhHHHHHHHHHHhc--cCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---h
Confidence 00011111 1 22566677777766543 5788888999998774 46999999999998876 8
Q ss_pred HHHHHHHHHHHH---hccHHHHHHHHHHHHHhCCC
Q 005108 549 KALLRRAASNSK---LEKWADAVRDFEVLRRELPD 580 (714)
Q Consensus 549 ~~~~~la~~~~~---~g~~~eA~~~~~~al~~~p~ 580 (714)
...+++|.++.. ..++..|.++|+++.+.+..
T Consensus 507 ~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~~~~~ 541 (552)
T KOG1550|consen 507 QALFNLGYMHEHGEGIKVLHLAKRYYDQASEEDSR 541 (552)
T ss_pred HHHhhhhhHHhcCcCcchhHHHHHHHHHHHhcCch
Confidence 999999999954 12379999999999887654
|
|
| >PF13728 TraF: F plasmid transfer operon protein | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.00019 Score=69.34 Aligned_cols=81 Identities=21% Similarity=0.373 Sum_probs=67.0
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEeccc-----------CcchhhhCCccccceEEEE-eCCeEE-
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDE-----------SPGVAHAENVRIVPTFKIY-KNGSRM- 694 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~-----------~~~l~~~~~v~~~Pt~~~~-~~G~~~- 694 (714)
.+..++.|+...|+.|+.+.|+|..+..+| ++.++.|++|. +..+++.++|..+|+++++ +++..+
T Consensus 120 ~~~gL~~F~~~~C~~C~~~~pil~~~~~~y-g~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~Lv~~~~~~~~ 198 (215)
T PF13728_consen 120 QKYGLFFFYRSDCPYCQQQAPILQQFADKY-GFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFLVNPNTKKWY 198 (215)
T ss_pred hCeEEEEEEcCCCchhHHHHHHHHHHHHHh-CCEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEEEECCCCeEE
Confidence 457789999999999999999999999998 68888888884 4678999999999998766 666444
Q ss_pred EEEcCC-CHHHHHHHH
Q 005108 695 KEIVCP-SRDMLEHSV 709 (714)
Q Consensus 695 ~~~~g~-~~~~l~~~~ 709 (714)
.-..|. +.++|.+.|
T Consensus 199 pv~~G~~s~~~L~~ri 214 (215)
T PF13728_consen 199 PVSQGFMSLDELEDRI 214 (215)
T ss_pred EEeeecCCHHHHHHhh
Confidence 445588 999988754
|
|
| >cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus | Back alignment and domain information |
|---|
Probab=98.04 E-value=8.1e-06 Score=70.98 Aligned_cols=79 Identities=9% Similarity=0.050 Sum_probs=53.3
Q ss_pred HHhhhccCCCceEEEeecCCCccccccchHHH---HHHhhC-CCcEEEEEecccCc-chhhhCCccccceEEEE-eCCeE
Q 005108 620 QFRAAVSLPGVSVVHFKSASNLHCKQISPYVE---TLCGRY-PSINFLKVDIDESP-GVAHAENVRIVPTFKIY-KNGSR 693 (714)
Q Consensus 620 ~~~~~i~~~~~~vv~f~a~~c~~C~~~~p~l~---~l~~~~-~~~~~~~vd~d~~~-~l~~~~~v~~~Pt~~~~-~~G~~ 693 (714)
.+..+...+++++++|++.||+.|+.+...+- ++.... .++..+.+|.|... .+. ..+ ..+||++|+ .+|++
T Consensus 15 al~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~d~td~~~~-~~g-~~vPtivFld~~g~v 92 (130)
T cd02960 15 GLYKAKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVHETTDKNLS-PDG-QYVPRIMFVDPSLTV 92 (130)
T ss_pred HHHHHHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEeccCCCCcC-ccC-cccCeEEEECCCCCC
Confidence 34455567889999999999999999887541 222222 23444466655321 111 234 689999999 99999
Q ss_pred EEEEcCC
Q 005108 694 MKEIVCP 700 (714)
Q Consensus 694 ~~~~~g~ 700 (714)
+.++.|.
T Consensus 93 i~~i~Gy 99 (130)
T cd02960 93 RADITGR 99 (130)
T ss_pred ccccccc
Confidence 9999887
|
They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19. |
| >TIGR02200 GlrX_actino Glutaredoxin-like protein | Back alignment and domain information |
|---|
Probab=98.03 E-value=9.3e-06 Score=64.82 Aligned_cols=70 Identities=23% Similarity=0.358 Sum_probs=53.7
Q ss_pred EEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCcchhhh-----CCccccceEEEEeCCeEEEEEcCCCHHHHH
Q 005108 632 VVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAHA-----ENVRIVPTFKIYKNGSRMKEIVCPSRDMLE 706 (714)
Q Consensus 632 vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~l~~~-----~~v~~~Pt~~~~~~G~~~~~~~g~~~~~l~ 706 (714)
++.|+++||++|+.+.+.+.++. +.|-.+|+++.+..... +++..+|++ ++.+|.. +..++.++|+
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~~-----~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i-~~~~g~~---l~~~~~~~~~ 72 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKLG-----AAYEWVDIEEDEGAADRVVSVNNGNMTVPTV-KFADGSF---LTNPSAAQVK 72 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHcC-----CceEEEeCcCCHhHHHHHHHHhCCCceeCEE-EECCCeE---ecCCCHHHHH
Confidence 57899999999999999987653 45667888887766655 489999997 5778864 3466777777
Q ss_pred HHHh
Q 005108 707 HSVR 710 (714)
Q Consensus 707 ~~~~ 710 (714)
+.|+
T Consensus 73 ~~l~ 76 (77)
T TIGR02200 73 AKLQ 76 (77)
T ss_pred HHhh
Confidence 7664
|
This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif. |
| >COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.03 E-value=8.4e-06 Score=71.03 Aligned_cols=82 Identities=24% Similarity=0.480 Sum_probs=69.8
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhCCC-cEEEEEecc-cCcchhhhCC--ccccceEEEEeCCeEEEEEcC--C-
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRYPS-INFLKVDID-ESPGVAHAEN--VRIVPTFKIYKNGSRMKEIVC--P- 700 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~-~~~~~vd~d-~~~~l~~~~~--v~~~Pt~~~~~~G~~~~~~~g--~- 700 (714)
..+++++||+.||+.|+.+.|.+.++..+++. +.++.+|+. ..+.++..|+ +..+|++.++.+|..+....+ .
T Consensus 32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 111 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDENPDLAAEFGVAVRSIPTLLLFKDGKEVDRLVGGKVL 111 (127)
T ss_pred CceEEEEEEcCcCHHHHhhchhHHHHHHHhcCCcEEEEEECCCCChHHHHHHhhhhccCCeEEEEeCcchhhhhhhcccC
Confidence 55788899999999999999999999999984 899999997 7899999999 999999999999988766665 3
Q ss_pred CHHHHHHHH
Q 005108 701 SRDMLEHSV 709 (714)
Q Consensus 701 ~~~~l~~~~ 709 (714)
....+....
T Consensus 112 ~~~~~~~~~ 120 (127)
T COG0526 112 PKEALIDAL 120 (127)
T ss_pred CHHHHHHHh
Confidence 555555443
|
|
| >cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate | Back alignment and domain information |
|---|
Probab=98.02 E-value=1.1e-05 Score=73.98 Aligned_cols=80 Identities=15% Similarity=0.116 Sum_probs=58.9
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhCC--CcEEEEEeccc-------Cc----c----------------------
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRYP--SINFLKVDIDE-------SP----G---------------------- 672 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~--~~~~~~vd~d~-------~~----~---------------------- 672 (714)
.+++++.||+.||+ |....|.|+++..++. ++.++.|.++. .. +
T Consensus 22 Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~f~~~~~~~~fp~~~d~d~~~~~ 100 (152)
T cd00340 22 GKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCNQFGGQEPGSNEEIKEFCETNYGVTFPMFAKIDVNGEN 100 (152)
T ss_pred CCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccCccccCCCCCHHHHHHHHHHhcCCCceeeeeEeccCCC
Confidence 46899999999999 9999999999999985 48888775421 00 0
Q ss_pred hhhhCC--ccccc-----------eEEEE-eCCeEEEEEcCC-CHHHHHHH
Q 005108 673 VAHAEN--VRIVP-----------TFKIY-KNGSRMKEIVCP-SRDMLEHS 708 (714)
Q Consensus 673 l~~~~~--v~~~P-----------t~~~~-~~G~~~~~~~g~-~~~~l~~~ 708 (714)
.+..|+ +..+| |.+++ ++|+++.++.|. +.++|+..
T Consensus 101 ~~~~~~~~~~~~p~~~~~~~~~~~ttflId~~G~i~~~~~G~~~~~~l~~~ 151 (152)
T cd00340 101 AHPLYKYLKEEAPGLLGKDIKWNFTKFLVDRDGEVVKRFAPTTDPEELEKD 151 (152)
T ss_pred CChHHHHHHhcCCCCCCCccccccEEEEECCCCcEEEEECCCCCHHHHHhc
Confidence 111222 34567 45555 999999999999 88887654
|
GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes. |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.0013 Score=69.73 Aligned_cols=67 Identities=16% Similarity=0.076 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHh------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccH-----------------HHHHHH
Q 005108 514 SVLYCNRAACWFKL------GQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKW-----------------ADAVRD 570 (714)
Q Consensus 514 ~~~~~~la~~~~~~------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~-----------------~eA~~~ 570 (714)
..++..+|.-.... ++.++++..|+++++++|+...+|+.+|..+.+.=+. ..|+..
T Consensus 252 a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~ 331 (352)
T PF02259_consen 252 AKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEG 331 (352)
T ss_pred HHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHH
Confidence 35566666666666 8889999999999999999999999998887554221 336677
Q ss_pred HHHHHHhCCC
Q 005108 571 FEVLRRELPD 580 (714)
Q Consensus 571 ~~~al~~~p~ 580 (714)
|-+++...++
T Consensus 332 y~~al~~~~~ 341 (352)
T PF02259_consen 332 YLKALSLGSK 341 (352)
T ss_pred HHHHHhhCCC
Confidence 7777777665
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.023 Score=60.06 Aligned_cols=348 Identities=10% Similarity=0.023 Sum_probs=185.9
Q ss_pred ccccCccccchhhhhc-------------------CCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 005108 220 SLAVGPENANVNRNRG-------------------GICGGDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRS 280 (714)
Q Consensus 220 al~~~p~~~~~~~~~~-------------------~~~p~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~ 280 (714)
-|+.+|.+.++|..+. ..-|..+.+|.......+...+|+....+|.+++..--+ .+.|.
T Consensus 12 rie~nP~di~sw~~lire~qt~~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLn-lDLW~ 90 (656)
T KOG1914|consen 12 RIEENPYDIDSWSQLIREAQTQPIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLN-LDLWK 90 (656)
T ss_pred HHhcCCccHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh-HhHHH
Confidence 4667788887776653 456778999999999999999999999999999875432 34443
Q ss_pred H-HHHHHHHCCCHHHHHHH----HHHHH---hcCCCcHHHHHHHHHHHH---------HcCCHHHHHHHHHhhcCCCChH
Q 005108 281 N-RAAALTGLGRIGEAVKE----CEEAV---RLDPNYWRAHQRLGSLLV---------RLGQVENARRHLCLSGQQADPT 343 (714)
Q Consensus 281 ~-la~~~~~~g~~~~A~~~----~~~al---~~~p~~~~a~~~la~~~~---------~~g~~~~A~~~~~~al~~~~~~ 343 (714)
. +-.+....++...+... |+-++ -.++.....|...+..+. .+.+.+.-.+.|++++..+-..
T Consensus 91 lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~n 170 (656)
T KOG1914|consen 91 LYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHN 170 (656)
T ss_pred HHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCcccc
Confidence 2 33333444444433332 22222 245555556665554432 3346666777888888732221
Q ss_pred ---HHHHHHHHHHH----HHHhHHHHHcCCHHHHHHHHHHHHHc-----------------------------------C
Q 005108 344 ---EVHRLQVVEKH----LSKCTDARKVGDWKSALREGDAAIAA-----------------------------------G 381 (714)
Q Consensus 344 ---~~~~l~~~~~~----~~~a~~~~~~g~~~~Al~~~~~al~~-----------------------------------~ 381 (714)
-|......+.- ..+-.+.....+|..|...+++...+ +
T Consensus 171 lEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksN 250 (656)
T KOG1914|consen 171 LEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSN 250 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcC
Confidence 12222222211 11112222333344444443333221 1
Q ss_pred CC------------------------CCHHHHHHHHHHHHHcCC--------------HHHHHHHhhccccCCCCCCCch
Q 005108 382 AD------------------------FSPQLSMCRVEALLKLHQ--------------LEDAESSLSNIPKIEPSTVSSS 423 (714)
Q Consensus 382 p~------------------------~~~~~~~~la~~~~~~g~--------------~~~A~~~~~~al~~~p~~~~~~ 423 (714)
|- +.+++|+..+..+...++ .+++..+|++++..--..
T Consensus 251 pL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~---- 326 (656)
T KOG1914|consen 251 PLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKE---- 326 (656)
T ss_pred CcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHH----
Confidence 10 113333332222222233 455556666555322111
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHhC---cHHHHHHHHHHHhccCCCCHH-HHHHHHh-HH------HHHHHH--------
Q 005108 424 QTRFFGMLSEAYTFFVRAQIEMALG---RFENAVTAAEKAGQIDPRNVE-VAVLLNN-VK------LVARAR-------- 484 (714)
Q Consensus 424 ~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~-~~~~l~~-l~------~~~~~~-------- 484 (714)
....++.++..-...- +++.-.+.+++++.+...+.. +|+.+.+ +. .+....
T Consensus 327 ---------~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r 397 (656)
T KOG1914|consen 327 ---------NKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKR 397 (656)
T ss_pred ---------HHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccC
Confidence 1223333333222222 255666677777655443322 2222211 10 000000
Q ss_pred --------HHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCC-HHHHHH
Q 005108 485 --------ARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLI--QPNY-TKALLR 553 (714)
Q Consensus 485 --------~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~-~~~~~~ 553 (714)
.--.-|...++.+-|...|+-.++..++.+..-+.....+..+++-..|...|++++.. .++. ...|..
T Consensus 398 ~~hhVfVa~A~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r 477 (656)
T KOG1914|consen 398 TRHHVFVAAALMEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDR 477 (656)
T ss_pred CcchhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHH
Confidence 00112455677777888888888888777777777777777888888888888887765 3332 255666
Q ss_pred HHHHHHHhccHHHHHHHHHHHHHhCCCC
Q 005108 554 RAASNSKLEKWADAVRDFEVLRRELPDD 581 (714)
Q Consensus 554 la~~~~~~g~~~eA~~~~~~al~~~p~~ 581 (714)
.-..-..-|+....++.-++-....|.+
T Consensus 478 ~l~yES~vGdL~si~~lekR~~~af~~~ 505 (656)
T KOG1914|consen 478 MLEYESNVGDLNSILKLEKRRFTAFPAD 505 (656)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHhcchh
Confidence 6666667777777777777777777744
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.0039 Score=67.48 Aligned_cols=76 Identities=17% Similarity=0.260 Sum_probs=46.3
Q ss_pred HHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHhccH
Q 005108 486 RGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYT-KALLRRAASNSKLEKW 564 (714)
Q Consensus 486 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~~ 564 (714)
.+.-|...|+|+.|.++|.++-. ...-...|-+.|+|++|.+.-+++. .|... ..|...+.-+.+.|+|
T Consensus 771 iadhyan~~dfe~ae~lf~e~~~--------~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf 840 (1636)
T KOG3616|consen 771 IADHYANKGDFEIAEELFTEADL--------FKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKF 840 (1636)
T ss_pred HHHHhccchhHHHHHHHHHhcch--------hHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcch
Confidence 46777788888888888776532 2234456777788888877766653 33332 3444555555666665
Q ss_pred HHHHHHH
Q 005108 565 ADAVRDF 571 (714)
Q Consensus 565 ~eA~~~~ 571 (714)
.+|.+.|
T Consensus 841 ~eaeqly 847 (1636)
T KOG3616|consen 841 AEAEQLY 847 (1636)
T ss_pred hhhhhee
Confidence 5554443
|
|
| >smart00594 UAS UAS domain | Back alignment and domain information |
|---|
Probab=97.98 E-value=2.1e-05 Score=68.95 Aligned_cols=88 Identities=15% Similarity=0.123 Sum_probs=65.4
Q ss_pred HHhhhccCCCceEEEeecCCCccccccchH------HHHHHhhCCCcEEEEEeccc--CcchhhhCCccccceEEEE-eC
Q 005108 620 QFRAAVSLPGVSVVHFKSASNLHCKQISPY------VETLCGRYPSINFLKVDIDE--SPGVAHAENVRIVPTFKIY-KN 690 (714)
Q Consensus 620 ~~~~~i~~~~~~vv~f~a~~c~~C~~~~p~------l~~l~~~~~~~~~~~vd~d~--~~~l~~~~~v~~~Pt~~~~-~~ 690 (714)
....+....+..+|+|+++||..|..+... +.++..+ ++.++.+|++. ..+++..|++.++|++.++ ++
T Consensus 19 a~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~--~fv~~~~dv~~~eg~~l~~~~~~~~~P~~~~l~~~ 96 (122)
T smart00594 19 AKQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRE--NFIFWQVDVDTSEGQRVSQFYKLDSFPYVAIVDPR 96 (122)
T ss_pred HHHHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHc--CEEEEEecCCChhHHHHHHhcCcCCCCEEEEEecC
Confidence 334455567799999999999999987643 3333322 56677788775 4568999999999999888 77
Q ss_pred C-----eEEEEEcCC-CHHHHHHHH
Q 005108 691 G-----SRMKEIVCP-SRDMLEHSV 709 (714)
Q Consensus 691 G-----~~~~~~~g~-~~~~l~~~~ 709 (714)
| +.+.++.|. +.++|...|
T Consensus 97 ~g~~~~~~~~~~~G~~~~~~l~~~l 121 (122)
T smart00594 97 TGQRVIEWVGVVEGEISPEELMTFL 121 (122)
T ss_pred CCceeEEEeccccCCCCHHHHHHhh
Confidence 6 356778888 888887765
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00016 Score=71.22 Aligned_cols=168 Identities=11% Similarity=-0.016 Sum_probs=132.7
Q ss_pred HHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhcc-CCCCHHH
Q 005108 392 RVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQI-DPRNVEV 470 (714)
Q Consensus 392 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~ 470 (714)
.+.++...|++.+|...++++++..|.+ ..++..--.+++.+|+.+.-...+++.+.. +++-+-.
T Consensus 109 ~aai~~~~g~~h~a~~~wdklL~d~PtD--------------lla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~ 174 (491)
T KOG2610|consen 109 KAAILWGRGKHHEAAIEWDKLLDDYPTD--------------LLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCY 174 (491)
T ss_pred hHHHhhccccccHHHHHHHHHHHhCchh--------------hhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHH
Confidence 4556677899999999999999999998 556666667888899999999999999976 7766544
Q ss_pred HHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC----
Q 005108 471 AVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPN---- 546 (714)
Q Consensus 471 ~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---- 546 (714)
-+.-.. .+..+...|-|++|.+.-++++++++.+..+...++.++...|++.++.+...+--..-..
T Consensus 175 sYv~Gm---------yaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~ml 245 (491)
T KOG2610|consen 175 SYVHGM---------YAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWML 245 (491)
T ss_pred HHHHHH---------HHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHH
Confidence 333221 2777889999999999999999999999999999999999999999999988765332111
Q ss_pred CHHHHHHHHHHHHHhccHHHHHHHHHHHH--HhCCCCH
Q 005108 547 YTKALLRRAASNSKLEKWADAVRDFEVLR--RELPDDN 582 (714)
Q Consensus 547 ~~~~~~~la~~~~~~g~~~eA~~~~~~al--~~~p~~~ 582 (714)
...-|..-|.++..-+.|+.|++.|++-+ ++..+|.
T Consensus 246 asHNyWH~Al~~iE~aeye~aleIyD~ei~k~l~k~Da 283 (491)
T KOG2610|consen 246 ASHNYWHTALFHIEGAEYEKALEIYDREIWKRLEKDDA 283 (491)
T ss_pred HhhhhHHHHHhhhcccchhHHHHHHHHHHHHHhhccch
Confidence 11345667888888899999999998643 3444554
|
|
| >cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs | Back alignment and domain information |
|---|
Probab=97.95 E-value=3.4e-05 Score=72.45 Aligned_cols=86 Identities=17% Similarity=0.221 Sum_probs=67.3
Q ss_pred CCCceEEEeecCCCccccccchHHHHHHhhCC--CcEEEEEeccc-----------------------------Ccchhh
Q 005108 627 LPGVSVVHFKSASNLHCKQISPYVETLCGRYP--SINFLKVDIDE-----------------------------SPGVAH 675 (714)
Q Consensus 627 ~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~--~~~~~~vd~d~-----------------------------~~~l~~ 675 (714)
...++++.||++||+.|....+.+.++..+++ ++.|+.|.+|. ...+++
T Consensus 24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~ 103 (171)
T cd02969 24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEVAK 103 (171)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHHHH
Confidence 34689999999999999999999999999986 58888887642 223467
Q ss_pred hCCccccceEEEE-eCCeEEEEEc---------CC-CHHHHHHHHhhh
Q 005108 676 AENVRIVPTFKIY-KNGSRMKEIV---------CP-SRDMLEHSVRHY 712 (714)
Q Consensus 676 ~~~v~~~Pt~~~~-~~G~~~~~~~---------g~-~~~~l~~~~~~~ 712 (714)
.|+|..+|+++++ ++|+++.... +. +.+.++..|+..
T Consensus 104 ~~~v~~~P~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 151 (171)
T cd02969 104 AYGAACTPDFFLFDPDGKLVYRGRIDDSRPGNDPPVTGRDLRAALDAL 151 (171)
T ss_pred HcCCCcCCcEEEECCCCeEEEeecccCCcccccccccHHHHHHHHHHH
Confidence 8999999998888 8999886531 22 567788777653
|
Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00058 Score=64.55 Aligned_cols=187 Identities=16% Similarity=0.137 Sum_probs=127.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCC
Q 005108 388 LSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRN 467 (714)
Q Consensus 388 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 467 (714)
.|..-+.+|...++|++|..++.++.+-..++. ..+.-+..+-..+.+...+..+.|+..+|+++..+.-.+
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~yEnnr--------slfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~ 104 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKGYENNR--------SLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVEC 104 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcc--------cHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 334456777888888888888888886655541 112224455666677777888899999999987543221
Q ss_pred H---HHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCC------HHHHHHHHHHHHHhCCHHHHHHHHH
Q 005108 468 V---EVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSN------SVLYCNRAACWFKLGQWERSVEDSN 538 (714)
Q Consensus 468 ~---~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~ 538 (714)
. .+-..+ .++.-..+..+.++|+++|++++.+-..+ .+.+-..+.++.+..++++|-..+.
T Consensus 105 GspdtAAmal----------eKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~l 174 (308)
T KOG1585|consen 105 GSPDTAAMAL----------EKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFL 174 (308)
T ss_pred CCcchHHHHH----------HHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHH
Confidence 1 111112 34555677889999999999998864332 4667778899999999999988887
Q ss_pred HHHHh------CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC----CCCHHHHHHHHHHH
Q 005108 539 QALLI------QPNYTKALLRRAASNSKLEKWADAVRDFEVLRREL----PDDNEIAESLFHAQ 592 (714)
Q Consensus 539 ~al~~------~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~----p~~~~~~~~L~~~~ 592 (714)
+-... .++....+.....+|.-..+|..|...|+..-++. +++....+.|..++
T Consensus 175 Ke~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay 238 (308)
T KOG1585|consen 175 KEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY 238 (308)
T ss_pred HhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh
Confidence 65432 34444566677777788889999999999977653 44455555555444
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.93 E-value=2.3e-05 Score=54.68 Aligned_cols=42 Identities=21% Similarity=0.222 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 005108 515 VLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAA 556 (714)
Q Consensus 515 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 556 (714)
.++..+|.+|..+|++++|++.|+++++.+|+++.++..+|.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 456666666666666666666666666666666666666553
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00026 Score=71.96 Aligned_cols=136 Identities=13% Similarity=0.059 Sum_probs=110.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHH-hCcHHHHHHHHHHHhccCCC
Q 005108 388 LSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMA-LGRFENAVTAAEKAGQIDPR 466 (714)
Q Consensus 388 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~ 466 (714)
+|..+.....+.+..+.|..+|.++.+..+.. ..+|...|.+.+. .++.+.|..+|+.+++..|.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~--------------~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~ 68 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCT--------------YHVYVAYALMEYYCNKDPKRARKIFERGLKKFPS 68 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS---------------THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCC--------------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCC
Confidence 34556677777788999999999998665554 5678888998777 45666699999999999999
Q ss_pred CHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCH---HHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Q 005108 467 NVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNS---VLYCNRAACWFKLGQWERSVEDSNQALLI 543 (714)
Q Consensus 467 ~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~ 543 (714)
+..+|..+ ...+...++.+.|..+|++++..-+... .+|......-.+.|+++...++.+++.+.
T Consensus 69 ~~~~~~~Y------------~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 69 DPDFWLEY------------LDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp -HHHHHHH------------HHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred CHHHHHHH------------HHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999988 7778899999999999999999866554 68888888889999999999999999999
Q ss_pred CCCCHH
Q 005108 544 QPNYTK 549 (714)
Q Consensus 544 ~p~~~~ 549 (714)
.|++..
T Consensus 137 ~~~~~~ 142 (280)
T PF05843_consen 137 FPEDNS 142 (280)
T ss_dssp TTTS-H
T ss_pred hhhhhH
Confidence 888543
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.0074 Score=68.78 Aligned_cols=302 Identities=14% Similarity=0.107 Sum_probs=182.7
Q ss_pred HHHHHHHHHHHHHhCCC----CHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhcCCC--c----HHHHHHHHHHHHHcCCH
Q 005108 258 FGEALSMYDKAISLAPR----NAAFRSNRAAALT-GLGRIGEAVKECEEAVRLDPN--Y----WRAHQRLGSLLVRLGQV 326 (714)
Q Consensus 258 ~~~Al~~~~~al~~~p~----~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~--~----~~a~~~la~~~~~~g~~ 326 (714)
...|+.+++-+++..+- .+.+++.+|.+|+ ...++++|..++++++.+... . ..+.+.++.++.+.+..
T Consensus 37 I~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~ 116 (608)
T PF10345_consen 37 IATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPK 116 (608)
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHH
Confidence 45678888888852221 2678888999888 789999999999999877633 2 33566778888888877
Q ss_pred HHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCC-CCCHHH----HHHHHHHHHHcCC
Q 005108 327 ENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGA-DFSPQL----SMCRVEALLKLHQ 401 (714)
Q Consensus 327 ~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p-~~~~~~----~~~la~~~~~~g~ 401 (714)
. |+..+++.++..+..........-.++ +...+...+++..|++.++....... .....+ ....+.++...+.
T Consensus 117 ~-a~~~l~~~I~~~~~~~~~~w~~~frll-~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~ 194 (608)
T PF10345_consen 117 A-ALKNLDKAIEDSETYGHSAWYYAFRLL-KIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGS 194 (608)
T ss_pred H-HHHHHHHHHHHHhccCchhHHHHHHHH-HHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCC
Confidence 7 999999988733331111111111111 12223333899999999999887752 112222 2224566677777
Q ss_pred HHHHHHHhhccccC------CCCCCCchhhhhhhhhhhHHHHHHH--HHHHHHhCcHHHHHHHHHHH---hccCCCCH--
Q 005108 402 LEDAESSLSNIPKI------EPSTVSSSQTRFFGMLSEAYTFFVR--AQIEMALGRFENAVTAAEKA---GQIDPRNV-- 468 (714)
Q Consensus 402 ~~~A~~~~~~al~~------~p~~~~~~~~~~~~~~~~~~~~~~l--a~~~~~~g~~~~A~~~~~~a---l~~~p~~~-- 468 (714)
.+++++.++++... ++.. .. ....+|..+ -.++...|+++.+...+++. ++...+..
T Consensus 195 ~~d~~~~l~~~~~~~~~~q~~~~~-~~---------~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w 264 (608)
T PF10345_consen 195 PDDVLELLQRAIAQARSLQLDPSV-HI---------PQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSW 264 (608)
T ss_pred chhHHHHHHHHHHHHhhcccCCCC-Cc---------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccC
Confidence 78888877766321 2221 11 112233333 33455567766666555442 21111100
Q ss_pred -----------------------H---HHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccC-------CCC--
Q 005108 469 -----------------------E---VAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFD-------PSN-- 513 (714)
Q Consensus 469 -----------------------~---~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-------p~~-- 513 (714)
. -|.....+. +..+.--|......+..++|.++++++++.- +..
T Consensus 265 ~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~-~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~ 343 (608)
T PF10345_consen 265 PSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELY-ALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPS 343 (608)
T ss_pred CCcCCCeeEEeecccccccCCCceeEEeecCHHHHH-HHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCC
Confidence 0 000000010 1111122556666777768888887777631 110
Q ss_pred -----------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC---CC------CHHHHHHHHHHHHHhccHHHH
Q 005108 514 -----------------SVLYCNRAACWFKLGQWERSVEDSNQALLIQ---PN------YTKALLRRAASNSKLEKWADA 567 (714)
Q Consensus 514 -----------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~------~~~~~~~la~~~~~~g~~~eA 567 (714)
..+++..+.+.+-+++|.+|...++.+.+.. |. .+..++..|..+...|+.+.|
T Consensus 344 ~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A 423 (608)
T PF10345_consen 344 ESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAA 423 (608)
T ss_pred cCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHH
Confidence 1344556778888999999999999887642 22 367788999999999999999
Q ss_pred HHHHH
Q 005108 568 VRDFE 572 (714)
Q Consensus 568 ~~~~~ 572 (714)
..+|.
T Consensus 424 ~~~y~ 428 (608)
T PF10345_consen 424 LYQYQ 428 (608)
T ss_pred HHHHh
Confidence 99998
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.0002 Score=67.57 Aligned_cols=98 Identities=23% Similarity=0.268 Sum_probs=88.5
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCC----------HHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 005108 241 DAEELKRMGNELYRKGCFGEALSMYDKAISL--------APRN----------AAFRSNRAAALTGLGRIGEAVKECEEA 302 (714)
Q Consensus 241 ~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~--------~p~~----------~~~~~~la~~~~~~g~~~~A~~~~~~a 302 (714)
....+...|+.+++.|+|.+|...|..|+.. .|.. ...+.+.+.|+...|+|-++++.+..+
T Consensus 177 av~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~sei 256 (329)
T KOG0545|consen 177 AVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEI 256 (329)
T ss_pred hhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHH
Confidence 4678889999999999999999999998742 3443 456889999999999999999999999
Q ss_pred HhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC
Q 005108 303 VRLDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQ 338 (714)
Q Consensus 303 l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~ 338 (714)
+..+|.+..+|+..|.++...-+..+|...|.+++.
T Consensus 257 L~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ 292 (329)
T KOG0545|consen 257 LRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLE 292 (329)
T ss_pred HhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999886
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.0036 Score=70.28 Aligned_cols=273 Identities=16% Similarity=0.099 Sum_probs=171.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHH------HH----------------hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Q 005108 248 MGNELYRKGCFGEALSMYDKA------IS----------------LAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRL 305 (714)
Q Consensus 248 ~g~~~~~~g~~~~Al~~~~~a------l~----------------~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 305 (714)
+|......+-|++|...|++- ++ ..-+.+.+|..+|.+..+.|...+|++.|-++
T Consensus 1054 ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika--- 1130 (1666)
T KOG0985|consen 1054 IAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA--- 1130 (1666)
T ss_pred HHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc---
Confidence 455555666667776666542 11 01245788999999999999999999988775
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCC-CChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 005108 306 DPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQ-ADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADF 384 (714)
Q Consensus 306 ~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~ 384 (714)
+++..|.....+..+.|.|++-++++.-+.+. .++.....+ ...|.+.++..+-.+.+ .+|+
T Consensus 1131 --dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eL---------i~AyAkt~rl~elE~fi-----~gpN- 1193 (1666)
T KOG0985|consen 1131 --DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSEL---------IFAYAKTNRLTELEEFI-----AGPN- 1193 (1666)
T ss_pred --CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHH---------HHHHHHhchHHHHHHHh-----cCCC-
Confidence 56778888888888999999998888766552 222211111 11234444443332221 2333
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccC
Q 005108 385 SPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQID 464 (714)
Q Consensus 385 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 464 (714)
..-....|.-.+..+.|+.|.-+|..+ ..|..++..+..+|+|+.|+...++|-..
T Consensus 1194 -~A~i~~vGdrcf~~~~y~aAkl~y~~v----------------------SN~a~La~TLV~LgeyQ~AVD~aRKAns~- 1249 (1666)
T KOG0985|consen 1194 -VANIQQVGDRCFEEKMYEAAKLLYSNV----------------------SNFAKLASTLVYLGEYQGAVDAARKANST- 1249 (1666)
T ss_pred -chhHHHHhHHHhhhhhhHHHHHHHHHh----------------------hhHHHHHHHHHHHHHHHHHHHHhhhccch-
Confidence 222334677777888888887777543 24677788888888888888887776432
Q ss_pred CCCHHHHHHHHh------------------HHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHH
Q 005108 465 PRNVEVAVLLNN------------------VKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFK 526 (714)
Q Consensus 465 p~~~~~~~~l~~------------------l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 526 (714)
..|..... +--++.+..+...|...|-|++-+..++.++-+...+...+..+|.+|.+
T Consensus 1250 ----ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsk 1325 (1666)
T KOG0985|consen 1250 ----KTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSK 1325 (1666)
T ss_pred ----hHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHh
Confidence 12211100 01123344567778889999999999999998888788888888888876
Q ss_pred hCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhccHHHHHH
Q 005108 527 LGQWERSVEDSNQALLI--------QPNYTKALLRRAASNSKLEKWADAVR 569 (714)
Q Consensus 527 ~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~eA~~ 569 (714)
- ++++-.+.++--... .-+....|..+-.+|.+-..|+.|.-
T Consensus 1326 y-kp~km~EHl~LFwsRvNipKviRA~eqahlW~ElvfLY~~y~eyDNAa~ 1375 (1666)
T KOG0985|consen 1326 Y-KPEKMMEHLKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNAAL 1375 (1666)
T ss_pred c-CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH
Confidence 4 355555555432211 01123456666667776666766643
|
|
| >KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.88 E-value=5.3e-06 Score=77.18 Aligned_cols=85 Identities=21% Similarity=0.341 Sum_probs=75.6
Q ss_pred CCCceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCcchhhhCCccccceEEEEeCCeEEEEEcCCCHHHHH
Q 005108 627 LPGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKEIVCPSRDMLE 706 (714)
Q Consensus 627 ~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~~~~g~~~~~l~ 706 (714)
.....+++||+.||.+|.++...++.+.+..+++.|++++.++.++++..+.|..+|.++++..|+.+.++.|+.+..+.
T Consensus 16 ~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~~~~~~~k~~a~~~~eis~~~~v~~vp~~~~~~~~~~v~~l~~~~~~~~~ 95 (227)
T KOG0911|consen 16 KGKLLVLHFWAIWAVVQKQMDQVFDHLAEYFKNAQFLKLEAEEFPEISNLIAVEAVPYFVFFFLGEKVDRLSGADPPFLV 95 (227)
T ss_pred ccchhhhhhhhhhhhhhhhHHHHHHHHHHhhhhheeeeehhhhhhHHHHHHHHhcCceeeeeecchhhhhhhccCcHHHH
Confidence 45578899999999999999999999999888899999999999999999999999999999999999999999555454
Q ss_pred HHHhh
Q 005108 707 HSVRH 711 (714)
Q Consensus 707 ~~~~~ 711 (714)
..+..
T Consensus 96 ~~~~~ 100 (227)
T KOG0911|consen 96 SKVEK 100 (227)
T ss_pred HHHHH
Confidence 44443
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.87 E-value=3.3e-05 Score=53.91 Aligned_cols=40 Identities=20% Similarity=0.213 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 005108 244 ELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRA 283 (714)
Q Consensus 244 ~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la 283 (714)
.++.+|..|...|++++|++.|+++++.+|+++.+|..+|
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 4445555555555555555555555555555555555544
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.0029 Score=70.90 Aligned_cols=210 Identities=13% Similarity=0.049 Sum_probs=139.4
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHH
Q 005108 308 NYWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQ 387 (714)
Q Consensus 308 ~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~ 387 (714)
+.+..|..+|.+..+.+...+|++.|-++ .||.... .......+.|.|++-++++..+-+...+. .
T Consensus 1102 n~p~vWsqlakAQL~~~~v~dAieSyika---dDps~y~---------eVi~~a~~~~~~edLv~yL~MaRkk~~E~--~ 1167 (1666)
T KOG0985|consen 1102 NEPAVWSQLAKAQLQGGLVKDAIESYIKA---DDPSNYL---------EVIDVASRTGKYEDLVKYLLMARKKVREP--Y 1167 (1666)
T ss_pred CChHHHHHHHHHHHhcCchHHHHHHHHhc---CCcHHHH---------HHHHHHHhcCcHHHHHHHHHHHHHhhcCc--c
Confidence 34778999999999999999999988765 4454432 22334677899999999988887764432 2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCC
Q 005108 388 LSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRN 467 (714)
Q Consensus 388 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 467 (714)
+-..+..+|.+.++..+-.+++. .|+. + -....|.-++..+.|+.|.-+|...-
T Consensus 1168 id~eLi~AyAkt~rl~elE~fi~-----gpN~--------------A-~i~~vGdrcf~~~~y~aAkl~y~~vS------ 1221 (1666)
T KOG0985|consen 1168 IDSELIFAYAKTNRLTELEEFIA-----GPNV--------------A-NIQQVGDRCFEEKMYEAAKLLYSNVS------ 1221 (1666)
T ss_pred chHHHHHHHHHhchHHHHHHHhc-----CCCc--------------h-hHHHHhHHHhhhhhhHHHHHHHHHhh------
Confidence 22345667888888877766542 4443 2 24456778888888888877775432
Q ss_pred HHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccC-----------CC--------------CHHHHHHHHH
Q 005108 468 VEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFD-----------PS--------------NSVLYCNRAA 522 (714)
Q Consensus 468 ~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-----------p~--------------~~~~~~~la~ 522 (714)
-|.. ++..+...|+|+.|.+.-++|-... .. +++-+-.+..
T Consensus 1222 --N~a~------------La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~ 1287 (1666)
T KOG0985|consen 1222 --NFAK------------LASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIE 1287 (1666)
T ss_pred --hHHH------------HHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHH
Confidence 2222 2777888899999998888764321 00 1233344556
Q ss_pred HHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHH
Q 005108 523 CWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFE 572 (714)
Q Consensus 523 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~ 572 (714)
.|...|-+++-+..++.++-+..-+...+..||.+|.+- ++++-.++++
T Consensus 1288 ~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsky-kp~km~EHl~ 1336 (1666)
T KOG0985|consen 1288 YYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKY-KPEKMMEHLK 1336 (1666)
T ss_pred HHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhc-CHHHHHHHHH
Confidence 667777788888887777777666666667777776553 4455444443
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.011 Score=62.50 Aligned_cols=281 Identities=17% Similarity=0.117 Sum_probs=159.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--------CCcHHHHHHHHH
Q 005108 248 MGNELYRKGCFGEALSMYDKAISLAP-RNAAFRSNRAAALTGLGRIGEAVKECEEAVRLD--------PNYWRAHQRLGS 318 (714)
Q Consensus 248 ~g~~~~~~g~~~~Al~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~~~~a~~~la~ 318 (714)
.+.+..+.|+|+. +.+.+...+ +.....+..+......++++++..+.+++...- .......+..-.
T Consensus 4 ~~eaaWrl~~Wd~----l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~ 79 (352)
T PF02259_consen 4 AAEAAWRLGDWDL----LEEYLSQSNEDSPEYSFYRALLALRQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLV 79 (352)
T ss_pred HHHHHHhcCChhh----HHHHHhhccCCChhHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 3566778888888 333333222 234666677777778899998888888876531 111111122222
Q ss_pred HHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHH-HHHcCCHHHHHHHHHHHHH--cCCCCCHHHHHHHHHH
Q 005108 319 LLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTD-ARKVGDWKSALREGDAAIA--AGADFSPQLSMCRVEA 395 (714)
Q Consensus 319 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~-~~~~g~~~~Al~~~~~al~--~~p~~~~~~~~~la~~ 395 (714)
-+..+.+.+++..+....... +.... ..+..+-.+-.. ......|+.-+..=.-++. ..+......+...+.+
T Consensus 80 ~lq~L~Elee~~~~~~~~~~~--~~~~~--~l~~~W~~Rl~~~~~~~~~~~~il~~R~~~l~~~~~~~~~~~~~l~~a~~ 155 (352)
T PF02259_consen 80 KLQQLVELEEIIELKSNLSQN--PQDLK--SLLKRWRSRLPNMQDDFSVWEPILSLRRLVLSLILLPEELAETWLKFAKL 155 (352)
T ss_pred HHhHHHHHHHHHHHHHhhccc--HHHHH--HHHHHHHHHHHHhccchHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHH
Confidence 222334444444444222110 11111 011111111111 1111112222222122222 1133445667789999
Q ss_pred HHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhcc-CCCC-----HH
Q 005108 396 LLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQI-DPRN-----VE 469 (714)
Q Consensus 396 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~-----~~ 469 (714)
..+.|+++.|...+.++...++.... ....+.+..+.++...|+.++|+..++..+.. .... ..
T Consensus 156 aRk~g~~~~A~~~l~~~~~~~~~~~~----------~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~ 225 (352)
T PF02259_consen 156 ARKAGNFQLALSALNRLFQLNPSSES----------LLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNA 225 (352)
T ss_pred HHHCCCcHHHHHHHHHHhccCCcccC----------CCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHH
Confidence 99999999999999999887643310 02456778899999999999999999888872 1111 00
Q ss_pred HH----------------HHHHhHHHHHHHHHHHhHHhhC------cCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHh
Q 005108 470 VA----------------VLLNNVKLVARARARGNDLFKS------ERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKL 527 (714)
Q Consensus 470 ~~----------------~~l~~l~~~~~~~~~g~~~~~~------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 527 (714)
.. ........+..+..+|...... +..++++..|.++++++|.....|+.+|..+.+.
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~ 305 (352)
T PF02259_consen 226 ELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKL 305 (352)
T ss_pred HHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHH
Confidence 00 0000111223344456655566 8899999999999999999999999998887654
Q ss_pred CC-----------------HHHHHHHHHHHHHhCCC
Q 005108 528 GQ-----------------WERSVEDSNQALLIQPN 546 (714)
Q Consensus 528 g~-----------------~~~A~~~~~~al~~~p~ 546 (714)
=+ ...|+..|-+++...+.
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 306 LESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred HHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 22 13466777777777666
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.008 Score=62.34 Aligned_cols=186 Identities=12% Similarity=0.075 Sum_probs=125.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHH---hCcHHHHHHHHHH-H
Q 005108 385 SPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMA---LGRFENAVTAAEK-A 460 (714)
Q Consensus 385 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~-a 460 (714)
..++..++-..|....+|+.-+++.+.+-.+.-.+. .....+.+..|.++.+ .|+.++|+..+.. .
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~----------~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l 209 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDV----------ANQHNIKFQYAFALNRRNKPGDREKALQILLPVL 209 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccch----------hcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHH
Confidence 455566677889999999999999888766521110 0115567778888888 9999999999999 5
Q ss_pred hccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 005108 461 GQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQA 540 (714)
Q Consensus 461 l~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 540 (714)
....+.+++.+..+..+..-.-. -..+......++|+.+|.++.+++|+ ...-.|++.++...|.-.+....+++.
T Consensus 210 ~~~~~~~~d~~gL~GRIyKD~~~---~s~~~d~~~ldkAi~~Y~kgFe~~~~-~Y~GIN~AtLL~~~g~~~~~~~el~~i 285 (374)
T PF13281_consen 210 ESDENPDPDTLGLLGRIYKDLFL---ESNFTDRESLDKAIEWYRKGFEIEPD-YYSGINAATLLMLAGHDFETSEELRKI 285 (374)
T ss_pred hccCCCChHHHHHHHHHHHHHHH---HcCccchHHHHHHHHHHHHHHcCCcc-ccchHHHHHHHHHcCCcccchHHHHHH
Confidence 56677788888877444211100 00011233589999999999999964 444456677777777544333222222
Q ss_pred H-Hh-----------CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHH
Q 005108 541 L-LI-----------QPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEI 584 (714)
Q Consensus 541 l-~~-----------~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~ 584 (714)
. ++ .-.+...+-.++.+..-.|++++|++.+++++++.|..=+.
T Consensus 286 ~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~l 341 (374)
T PF13281_consen 286 GVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWEL 341 (374)
T ss_pred HHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchhH
Confidence 2 11 22344566677888889999999999999999998765443
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.072 Score=57.51 Aligned_cols=285 Identities=13% Similarity=0.016 Sum_probs=174.3
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH-HcCCHHHHHHHHHhh
Q 005108 258 FGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLV-RLGQVENARRHLCLS 336 (714)
Q Consensus 258 ~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~-~~g~~~~A~~~~~~a 336 (714)
.+.+...|+..+...|.....|...|..-.++|..+++.+.|++++.--|.....|..+-..+. ..|+.+.-...|+.|
T Consensus 61 ~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A 140 (577)
T KOG1258|consen 61 VDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERA 140 (577)
T ss_pred HHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 3556667777777788777788888888888888888888888888877776666655443332 345555656666666
Q ss_pred cCCCC-----hHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH--------------------
Q 005108 337 GQQAD-----PTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMC-------------------- 391 (714)
Q Consensus 337 l~~~~-----~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~-------------------- 391 (714)
..... ..-|...-.. ....+++..-...|++.++.--......+..
T Consensus 141 ~~~vG~dF~S~~lWdkyie~---------en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~ 211 (577)
T KOG1258|consen 141 KSYVGLDFLSDPLWDKYIEF---------ENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEKILLSIDELI 211 (577)
T ss_pred HHhcccchhccHHHHHHHHH---------HhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhhhcCHHHHH
Confidence 54111 1111111111 1233444444444444443311100000000
Q ss_pred -------------------------------------------------HHHHHHHcCCHHHHHHHhhccccCCCCCCCc
Q 005108 392 -------------------------------------------------RVEALLKLHQLEDAESSLSNIPKIEPSTVSS 422 (714)
Q Consensus 392 -------------------------------------------------la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 422 (714)
.=.++.......+.+..++..++..-...
T Consensus 212 ~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhv-- 289 (577)
T KOG1258|consen 212 QLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHV-- 289 (577)
T ss_pred HHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhcccccccc--
Confidence 00111122222222233333322110000
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHH
Q 005108 423 SQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQA 502 (714)
Q Consensus 423 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~ 502 (714)
+ .........|..........|+++...-.|++++---....+.|..+ +......|+.+-|...
T Consensus 290 ---k-pl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky------------~~~m~~~~~~~~~~~~ 353 (577)
T KOG1258|consen 290 ---K-PLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKY------------ARWMESSGDVSLANNV 353 (577)
T ss_pred ---C-cccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHH------------HHHHHHcCchhHHHHH
Confidence 0 00012234566667777888999999999999987777777888766 5556666888888888
Q ss_pred HHHhhcc-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHH
Q 005108 503 YGEGLRF-DPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVR 569 (714)
Q Consensus 503 ~~~al~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~ 569 (714)
+..+.++ .|..+.+...-+..-...|++..|...+++..+..|+...+-+.......+.|+.+.+..
T Consensus 354 ~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~ 421 (577)
T KOG1258|consen 354 LARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANY 421 (577)
T ss_pred HHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhH
Confidence 8887776 466677777788888888999999999999988778888888888888888888888874
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.04 Score=57.18 Aligned_cols=183 Identities=16% Similarity=0.158 Sum_probs=114.0
Q ss_pred HHHcCCHHHHHHHhhccccCCCCCCCchh-----hhhhhhh----------------------------hhHHHHHHHHH
Q 005108 396 LLKLHQLEDAESSLSNIPKIEPSTVSSSQ-----TRFFGML----------------------------SEAYTFFVRAQ 442 (714)
Q Consensus 396 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~-----~~~~~~~----------------------------~~~~~~~~la~ 442 (714)
..+.++...|.+++.-+..++|...-... ..+.+.+ ..+..+..-|.
T Consensus 308 ~Vk~~~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak 387 (549)
T PF07079_consen 308 KVKQVQTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAK 387 (549)
T ss_pred HHHHHhHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHH
Confidence 45667788888888877778887521100 0000000 11222344556
Q ss_pred HHHHhCc-HHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHH--HHHH------hh---ccC
Q 005108 443 IEMALGR-FENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQ--AYGE------GL---RFD 510 (714)
Q Consensus 443 ~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~--~~~~------al---~~~ 510 (714)
-+.+.|. -++|+.+++.+++..+.+.++...... +-...|.+|+. .+.+ .+ .+.
T Consensus 388 ~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~--------------fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~ 453 (549)
T PF07079_consen 388 HLWEIGQCDEKALNLLKLILQFTNYDIECENIVFL--------------FVKQAYKQALSMHAIPRLLKLEDFITEVGLT 453 (549)
T ss_pred HHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHH--------------HHHHHHHHHHhhhhHHHHHHHHHHHHhcCCC
Confidence 6677777 889999999999998888765543211 11111222221 1111 11 122
Q ss_pred ---CCCHHHHHHHH--HHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHH--
Q 005108 511 ---PSNSVLYCNRA--ACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNE-- 583 (714)
Q Consensus 511 ---p~~~~~~~~la--~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~-- 583 (714)
-.+.++-+.++ .-++.+|+|.++.-+..=..++.| .+.++..+|.+++...+|++|.+++... |.+.+
T Consensus 454 ~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L----P~n~~~~ 528 (549)
T PF07079_consen 454 PITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL----PPNERMR 528 (549)
T ss_pred cccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC----CCchhhH
Confidence 23445555554 456789999999999999999999 7999999999999999999999988643 33443
Q ss_pred ---HHHHHHHHHHHhhh
Q 005108 584 ---IAESLFHAQVSLKK 597 (714)
Q Consensus 584 ---~~~~L~~~~~~l~~ 597 (714)
+...+.-++..+.+
T Consensus 529 dskvqKAl~lCqKh~~k 545 (549)
T PF07079_consen 529 DSKVQKALALCQKHLPK 545 (549)
T ss_pred HHHHHHHHHHHHHhhhh
Confidence 44555555555543
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.81 E-value=1.2e-05 Score=84.85 Aligned_cols=100 Identities=16% Similarity=0.241 Sum_probs=72.9
Q ss_pred ceeeehhhhHHhhhccCCC-ceEEEeecCCCccccccchHHHHHHhhCC----CcEEEEEeccc--CcchhhhCCccccc
Q 005108 611 EVEEVSSLEQFRAAVSLPG-VSVVHFKSASNLHCKQISPYVETLCGRYP----SINFLKVDIDE--SPGVAHAENVRIVP 683 (714)
Q Consensus 611 ~~~~i~~~e~~~~~i~~~~-~~vv~f~a~~c~~C~~~~p~l~~l~~~~~----~~~~~~vd~d~--~~~l~~~~~v~~~P 683 (714)
+.......+.|..++-... ..+|.|++.|||+|+.+.|.++++++... -+.+..||+-+ +..+|..|+|+++|
T Consensus 39 D~ii~Ld~~tf~~~v~~~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef~V~~~P 118 (606)
T KOG1731|consen 39 DPIIELDVDTFNAAVFGSRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREFSVSGYP 118 (606)
T ss_pred CCeEEeehhhhHHHhcccchhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhHhhcCCCCCc
Confidence 3344445567777665544 78999999999999999999999998763 36677888764 77899999999999
Q ss_pred eEEEEeCCeEE----EEEcCC-CHHHHHHHHh
Q 005108 684 TFKIYKNGSRM----KEIVCP-SRDMLEHSVR 710 (714)
Q Consensus 684 t~~~~~~G~~~----~~~~g~-~~~~l~~~~~ 710 (714)
++..|+-+..- ..+.|+ ...++++.+.
T Consensus 119 tlryf~~~~~~~~~G~~~~~~~~~~ei~~~l~ 150 (606)
T KOG1731|consen 119 TLRYFPPDSQNKTDGSDVSGPVIPSEIRDQLI 150 (606)
T ss_pred eeeecCCccccCcCCCcccCCcchhhHHHHHH
Confidence 99999544222 234455 4555555543
|
|
| >cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx) | Back alignment and domain information |
|---|
Probab=97.80 E-value=7.4e-05 Score=67.82 Aligned_cols=73 Identities=15% Similarity=0.166 Sum_probs=60.0
Q ss_pred CCceEEEeecCC-CccccccchHHHHHHhhCCCcEEEEEeccc----------------------C-cchhhhCCccc--
Q 005108 628 PGVSVVHFKSAS-NLHCKQISPYVETLCGRYPSINFLKVDIDE----------------------S-PGVAHAENVRI-- 681 (714)
Q Consensus 628 ~~~~vv~f~a~~-c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~----------------------~-~~l~~~~~v~~-- 681 (714)
.+.+++.||+.| |+.|....|.+.++..+++++.++-|.+|. . ..++.+|+|..
T Consensus 26 gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv~~~~ 105 (143)
T cd03014 26 GKVKVISVFPSIDTPVCATQTKRFNKEAAKLDNTVVLTISADLPFAQKRWCGAEGVDNVTTLSDFRDHSFGKAYGVLIKD 105 (143)
T ss_pred CCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcCCCEEEEEECCCHHHHHHHHHhcCCCCceEeecCcccHHHHHhCCeecc
Confidence 458999999988 699999999999999999888888888753 1 34567888864
Q ss_pred ----cceEEEE-eCCeEEEEEcCC
Q 005108 682 ----VPTFKIY-KNGSRMKEIVCP 700 (714)
Q Consensus 682 ----~Pt~~~~-~~G~~~~~~~g~ 700 (714)
.|+.+++ ++|+++...+|.
T Consensus 106 ~~~~~~~~~iid~~G~I~~~~~~~ 129 (143)
T cd03014 106 LGLLARAVFVIDENGKVIYVELVP 129 (143)
T ss_pred CCccceEEEEEcCCCeEEEEEECC
Confidence 6777766 899999998876
|
Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.79 E-value=2.5e-05 Score=50.78 Aligned_cols=32 Identities=41% Similarity=0.486 Sum_probs=21.1
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHH
Q 005108 265 YDKAISLAPRNAAFRSNRAAALTGLGRIGEAV 296 (714)
Q Consensus 265 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 296 (714)
|+++|+++|+++.+|+++|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 56666666666666666666666666666664
|
|
| >KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.79 E-value=4.1e-05 Score=81.81 Aligned_cols=89 Identities=21% Similarity=0.243 Sum_probs=76.2
Q ss_pred hccCCCceEEEeecCCCccccccchHHHHHHhhC---CCcEEEEEecccCcchhhhCCccccceEEEEeCCeE-EEEEcC
Q 005108 624 AVSLPGVSVVHFKSASNLHCKQISPYVETLCGRY---PSINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSR-MKEIVC 699 (714)
Q Consensus 624 ~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~---~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~-~~~~~g 699 (714)
........+|.|+++||++|+.+.|.++++...+ ..+.+..+|++....++..++|+..||+++|++|.. .....|
T Consensus 158 ~~~~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~~~~~~~~~~~v~~~Pt~~~f~~~~~~~~~~~~ 237 (383)
T KOG0191|consen 158 VKDSDADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDATVHKSLASRLEVRGYPTLKLFPPGEEDIYYYSG 237 (383)
T ss_pred hhccCcceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccchHHHHhhhhcccCCceEEEecCCCcccccccc
Confidence 3345678899999999999999999999998876 358889999998899999999999999999988888 555666
Q ss_pred C-CHHHHHHHHhhh
Q 005108 700 P-SRDMLEHSVRHY 712 (714)
Q Consensus 700 ~-~~~~l~~~~~~~ 712 (714)
. +.+.+..++...
T Consensus 238 ~R~~~~i~~~v~~~ 251 (383)
T KOG0191|consen 238 LRDSDSIVSFVEKK 251 (383)
T ss_pred cccHHHHHHHHHhh
Confidence 6 889999888764
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0022 Score=63.44 Aligned_cols=167 Identities=16% Similarity=0.065 Sum_probs=112.7
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHh
Q 005108 279 RSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKC 358 (714)
Q Consensus 279 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a 358 (714)
....+.++...|++.+|...+++.++..|.+.-++..--.+++.+|+...-...+++.+..-
T Consensus 106 ~h~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w------------------ 167 (491)
T KOG2610|consen 106 RHAKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW------------------ 167 (491)
T ss_pred hhhhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhcccc------------------
Confidence 33445667778888888888888888888887777777777777777766666665554311
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHH
Q 005108 359 TDARKVGDWKSALREGDAAIAAGADFS--PQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYT 436 (714)
Q Consensus 359 ~~~~~~g~~~~Al~~~~~al~~~p~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~ 436 (714)
+++.. ..+.-.++..+...|-|++|.+..++++++++.+ ..+
T Consensus 168 ----------------------n~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D--------------~Wa 211 (491)
T KOG2610|consen 168 ----------------------NADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFD--------------CWA 211 (491)
T ss_pred ----------------------CCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcc--------------hHH
Confidence 22211 2233346777888888888888888888888887 777
Q ss_pred HHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhh
Q 005108 437 FFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGL 507 (714)
Q Consensus 437 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 507 (714)
...++.++...+++.++.++..+--..-. . .+.. ..-.+-..+..+...+.|+.|++.|..-+
T Consensus 212 ~Ha~aHVlem~~r~Keg~eFM~~ted~Wr-~--s~ml-----asHNyWH~Al~~iE~aeye~aleIyD~ei 274 (491)
T KOG2610|consen 212 SHAKAHVLEMNGRHKEGKEFMYKTEDDWR-Q--SWML-----ASHNYWHTALFHIEGAEYEKALEIYDREI 274 (491)
T ss_pred HHHHHHHHHhcchhhhHHHHHHhcccchh-h--hhHH-----HhhhhHHHHHhhhcccchhHHHHHHHHHH
Confidence 78888888888888888888776432211 1 1110 01112233667777788888888887543
|
|
| >TIGR02540 gpx7 putative glutathione peroxidase Gpx7 | Back alignment and domain information |
|---|
Probab=97.76 E-value=8.3e-05 Score=68.32 Aligned_cols=85 Identities=16% Similarity=0.080 Sum_probs=63.1
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhCC--CcEEEEEec--------ccCcc---hh--------------------
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRYP--SINFLKVDI--------DESPG---VA-------------------- 674 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~--~~~~~~vd~--------d~~~~---l~-------------------- 674 (714)
.++++|.||++||++|....|.+.++..+|. ++.++.|++ +..+. .+
T Consensus 22 Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~~~~~~~~~d~~~~~~~f~~~~~~~~fp~~~d~~~~~~~ 101 (153)
T TIGR02540 22 GKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPCNQFGESEPDSSKEIESFARRNYGVTFPMFSKIKILGSE 101 (153)
T ss_pred CCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEeccccccCCCCCHHHHHHHHHHhcCCCCCccceEecCCCC
Confidence 4578899999999999999999999999985 588887764 11000 11
Q ss_pred ----hhCCc---cccce-----EEEEeCCeEEEEEcCC-CHHHHHHHHhhh
Q 005108 675 ----HAENV---RIVPT-----FKIYKNGSRMKEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 675 ----~~~~v---~~~Pt-----~~~~~~G~~~~~~~g~-~~~~l~~~~~~~ 712 (714)
..|.+ ..+|+ |+|-++|+++.++.|. +.++|+..|+++
T Consensus 102 ~~~~~~~~~~~~~~~p~~~~~tflID~~G~v~~~~~g~~~~~~l~~~i~~l 152 (153)
T TIGR02540 102 AEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFWRPEEPVEEIRPEITAL 152 (153)
T ss_pred CCcHHHHHHhcCCCCCCCccEEEEEcCCCcEEEEECCCCCHHHHHHHHHHh
Confidence 11222 24784 5555999999999999 999999888764
|
This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7. |
| >cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides | Back alignment and domain information |
|---|
Probab=97.76 E-value=8.8e-05 Score=67.02 Aligned_cols=82 Identities=15% Similarity=0.083 Sum_probs=64.8
Q ss_pred CCceEEEee-cCCCccccccchHHHHHHhhCC--CcEEEEEeccc---------------------CcchhhhCCcccc-
Q 005108 628 PGVSVVHFK-SASNLHCKQISPYVETLCGRYP--SINFLKVDIDE---------------------SPGVAHAENVRIV- 682 (714)
Q Consensus 628 ~~~~vv~f~-a~~c~~C~~~~p~l~~l~~~~~--~~~~~~vd~d~---------------------~~~l~~~~~v~~~- 682 (714)
.+++++.|| +.||+.|....+.+.++..++. ++.++.|.+|. ...+++.|+|..+
T Consensus 23 gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~ 102 (140)
T cd03017 23 GKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEKYGLPFPLLSDPDGKLAKAYGVWGEK 102 (140)
T ss_pred CCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCCcccc
Confidence 468899999 5899999999999988888774 57777766553 3456788999988
Q ss_pred --------ceEEEE-eCCeEEEEEcCC-CHHHHHHHH
Q 005108 683 --------PTFKIY-KNGSRMKEIVCP-SRDMLEHSV 709 (714)
Q Consensus 683 --------Pt~~~~-~~G~~~~~~~g~-~~~~l~~~~ 709 (714)
|+++++ ++|+++..+.|. ..+.+.+.+
T Consensus 103 ~~~~~~~~p~~~lid~~G~v~~~~~g~~~~~~~~~~~ 139 (140)
T cd03017 103 KKKYMGIERSTFLIDPDGKIVKVWRKVKPKGHAEEVL 139 (140)
T ss_pred ccccCCcceeEEEECCCCEEEEEEecCCccchHHHHh
Confidence 887777 789999999999 666666554
|
The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w |
| >cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold | Back alignment and domain information |
|---|
Probab=97.74 E-value=6.6e-05 Score=57.07 Aligned_cols=60 Identities=27% Similarity=0.455 Sum_probs=51.9
Q ss_pred EEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCcchhh---hCCccccceEEEEeCC
Q 005108 632 VVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAH---AENVRIVPTFKIYKNG 691 (714)
Q Consensus 632 vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~l~~---~~~v~~~Pt~~~~~~G 691 (714)
++.|+..||+.|..+.+.+.++.....++.+..+|++....... .+++..+|+++++..|
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ 63 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAELALLNKGVKFEAVDVDEDPALEKELKRYGVGGVPTLVVFGPG 63 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHHHhhCCCcEEEEEEcCCChHHhhHHHhCCCccccEEEEEeCC
Confidence 46899999999999999999984444679999999999877655 8999999999999887
|
Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others. |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.74 E-value=2.9e-05 Score=50.48 Aligned_cols=32 Identities=19% Similarity=0.244 Sum_probs=16.5
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhccHHHHH
Q 005108 537 SNQALLIQPNYTKALLRRAASNSKLEKWADAV 568 (714)
Q Consensus 537 ~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~ 568 (714)
|+++++++|+++.+|+++|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 44555555555555555555555555555543
|
|
| >TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00065 Score=66.77 Aligned_cols=83 Identities=16% Similarity=0.334 Sum_probs=67.0
Q ss_pred CceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccC-----------cchhhhCCccccceEEEE-eCCeEEEE
Q 005108 629 GVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDES-----------PGVAHAENVRIVPTFKIY-KNGSRMKE 696 (714)
Q Consensus 629 ~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~-----------~~l~~~~~v~~~Pt~~~~-~~G~~~~~ 696 (714)
...++.|+...|+.|+++.|+|+.+..+|. +.++.|++|.. ..+++.+||..+|+++++ ++++.+..
T Consensus 151 ~~gL~fFy~~~C~~C~~~apil~~fa~~yg-i~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~Lv~~~t~~~~p 229 (256)
T TIGR02739 151 SYGLFFFYRGKSPISQKMAPVIQAFAKEYG-ISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYLVNPKSQKMSP 229 (256)
T ss_pred ceeEEEEECCCCchhHHHHHHHHHHHHHhC-CeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEEEECCCCcEEE
Confidence 367899999999999999999999999985 77888888864 337889999999987655 77555544
Q ss_pred -EcCC-CHHHHHHHHhhh
Q 005108 697 -IVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 697 -~~g~-~~~~l~~~~~~~ 712 (714)
-.|. +.++|.+.|-.+
T Consensus 230 v~~G~iS~deL~~Ri~~v 247 (256)
T TIGR02739 230 LAYGFISQDELKERILNV 247 (256)
T ss_pred EeeccCCHHHHHHHHHHH
Confidence 4488 999998877553
|
This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se. |
| >PTZ00256 glutathione peroxidase; Provisional | Back alignment and domain information |
|---|
Probab=97.73 E-value=7.8e-05 Score=70.62 Aligned_cols=83 Identities=13% Similarity=0.165 Sum_probs=61.2
Q ss_pred ceEEEeecCCCccccccchHHHHHHhhCC--CcEEEEEeccc----C----c--------c-------h----------h
Q 005108 630 VSVVHFKSASNLHCKQISPYVETLCGRYP--SINFLKVDIDE----S----P--------G-------V----------A 674 (714)
Q Consensus 630 ~~vv~f~a~~c~~C~~~~p~l~~l~~~~~--~~~~~~vd~d~----~----~--------~-------l----------~ 674 (714)
++++.+|++||++|....|.++++..+|. ++.++-|++++ . + + + +
T Consensus 43 vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~~~~~~~~~~~~~~~~f~~~~~~~~fpv~~d~d~~g~~~~ 122 (183)
T PTZ00256 43 AIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCNQFMEQEPWDEPEIKEYVQKKFNVDFPLFQKIEVNGENTH 122 (183)
T ss_pred EEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCCCceEEecCCCCCC
Confidence 33456699999999999999999999885 48888886431 0 0 0 0 0
Q ss_pred hh---------------CCccccce----EEEEeCCeEEEEEcCC-CHHHHHHHHhhh
Q 005108 675 HA---------------ENVRIVPT----FKIYKNGSRMKEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 675 ~~---------------~~v~~~Pt----~~~~~~G~~~~~~~g~-~~~~l~~~~~~~ 712 (714)
.. +++..+|+ |+|-++|+++.+++|. +.+.+++.|.++
T Consensus 123 ~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflID~~G~Iv~~~~g~~~~~~l~~~I~~l 180 (183)
T PTZ00256 123 EIYKYLRRNSELFQNNTNEARQIPWNFAKFLIDGQGKVVKYFSPKVNPNEMIQDIEKL 180 (183)
T ss_pred HHHHHHHhhCCCCcCccccCcccCcceEEEEECCCCCEEEEECCCCCHHHHHHHHHHH
Confidence 01 24568894 5555999999999999 888888888764
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.005 Score=68.96 Aligned_cols=271 Identities=12% Similarity=0.015 Sum_probs=175.3
Q ss_pred CCCcHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHCC-----CHHHHHHHHHHH
Q 005108 238 CGGDAEELKRMGNELYRK-----GCFGEALSMYDKAISL-----APRNAAFRSNRAAALTGLG-----RIGEAVKECEEA 302 (714)
Q Consensus 238 ~p~~~~~~~~~g~~~~~~-----g~~~~Al~~~~~al~~-----~p~~~~~~~~la~~~~~~g-----~~~~A~~~~~~a 302 (714)
.-.+......+|.+|+.- .|.+.|+.+|+.+.+. .-.++.+.+.+|.+|.+.. +++.|+.+|.++
T Consensus 240 ~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~a 319 (552)
T KOG1550|consen 240 KLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKA 319 (552)
T ss_pred hhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHH
Confidence 446778888888888765 6899999999999771 1125567889999999853 788899999999
Q ss_pred HhcCCCcHHHHHHHHHHHHHcC---CHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHH
Q 005108 303 VRLDPNYWRAHQRLGSLLVRLG---QVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIA 379 (714)
Q Consensus 303 l~~~p~~~~a~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~ 379 (714)
-+.. ++.+.+.+|.++..-. ++..|.++|..+.+.........+... +..+ .....+...|..++.++.+
T Consensus 320 A~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~---y~~G--~gv~r~~~~A~~~~k~aA~ 392 (552)
T KOG1550|consen 320 AELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALC---YELG--LGVERNLELAFAYYKKAAE 392 (552)
T ss_pred HhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHH---HHhC--CCcCCCHHHHHHHHHHHHH
Confidence 8764 5678889999988765 578999999998765555443322222 1111 2244688999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHH-cCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHH----hCcHHHHH
Q 005108 380 AGADFSPQLSMCRVEALLK-LHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMA----LGRFENAV 454 (714)
Q Consensus 380 ~~p~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~ 454 (714)
.+.- ...+. ++..+.. .++++.+.-.+....+..-..... .+............ ..+.+.+.
T Consensus 393 ~g~~--~A~~~-~~~~~~~g~~~~~~~~~~~~~~a~~g~~~~q~----------~a~~l~~~~~~~~~~~~~~~~~~~~~ 459 (552)
T KOG1550|consen 393 KGNP--SAAYL-LGAFYEYGVGRYDTALALYLYLAELGYEVAQS----------NAAYLLDQSEEDLFSRGVISTLERAF 459 (552)
T ss_pred ccCh--hhHHH-HHHHHHHccccccHHHHHHHHHHHhhhhHHhh----------HHHHHHHhccccccccccccchhHHH
Confidence 8732 21222 3333322 277777766665554443332000 00000000000111 12445555
Q ss_pred HHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhC----cCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHH----
Q 005108 455 TAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKS----ERFTEACQAYGEGLRFDPSNSVLYCNRAACWFK---- 526 (714)
Q Consensus 455 ~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~---- 526 (714)
..+.++.... +..+... +|.+|+.- .+++.|...|..+.... ....+++|.++..
T Consensus 460 ~~~~~a~~~g--~~~a~~~------------lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~ 522 (552)
T KOG1550|consen 460 SLYSRAAAQG--NADAILK------------LGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGI 522 (552)
T ss_pred HHHHHHHhcc--CHHHHhh------------hcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCc
Confidence 5555554332 2333333 37777654 46999999999998876 8999999999875
Q ss_pred hCCHHHHHHHHHHHHHhCCC
Q 005108 527 LGQWERSVEDSNQALLIQPN 546 (714)
Q Consensus 527 ~g~~~~A~~~~~~al~~~p~ 546 (714)
.. +..|.++|.++.+.+..
T Consensus 523 ~~-~~~a~~~~~~~~~~~~~ 541 (552)
T KOG1550|consen 523 KV-LHLAKRYYDQASEEDSR 541 (552)
T ss_pred ch-hHHHHHHHHHHHhcCch
Confidence 33 89999999999887654
|
|
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.72 E-value=2.2e-05 Score=77.72 Aligned_cols=109 Identities=25% Similarity=0.380 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 005108 243 EELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVR 322 (714)
Q Consensus 243 ~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~ 322 (714)
......+...+..|++++|++.|..+|+++|.....|..++.+++++++...|+..|..+++++|+...-|-..+.....
T Consensus 115 ~e~k~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rl 194 (377)
T KOG1308|consen 115 NDKKVQASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERL 194 (377)
T ss_pred HHHHHHHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHH
Confidence 34556777888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHhhcC-CCChHHHHHHHHH
Q 005108 323 LGQVENARRHLCLSGQ-QADPTEVHRLQVV 351 (714)
Q Consensus 323 ~g~~~~A~~~~~~al~-~~~~~~~~~l~~~ 351 (714)
+|+|++|...|..+.+ ..++.....+..+
T Consensus 195 lg~~e~aa~dl~~a~kld~dE~~~a~lKeV 224 (377)
T KOG1308|consen 195 LGNWEEAAHDLALACKLDYDEANSATLKEV 224 (377)
T ss_pred hhchHHHHHHHHHHHhccccHHHHHHHHHh
Confidence 9999999999998876 4444444444444
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.12 Score=55.96 Aligned_cols=336 Identities=10% Similarity=-0.096 Sum_probs=217.5
Q ss_pred cCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHHCCCHHHHHHHHHHHHhcCCCc---H
Q 005108 235 GGICGGDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNR-AAALTGLGRIGEAVKECEEAVRLDPNY---W 310 (714)
Q Consensus 235 ~~~~p~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~l-a~~~~~~g~~~~A~~~~~~al~~~p~~---~ 310 (714)
..-.|---..|...|..-++.|..+.+++.|++++.--|.....|... +.+--..|+.+.-...|++|+.....+ .
T Consensus 72 L~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~ 151 (577)
T KOG1258|consen 72 LSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSD 151 (577)
T ss_pred HhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhcc
Confidence 335666777888999999999999999999999999999887777765 344445677777778888887764332 3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhhcCCCChHH------------------HHHHHHH---------------------
Q 005108 311 RAHQRLGSLLVRLGQVENARRHLCLSGQQADPTE------------------VHRLQVV--------------------- 351 (714)
Q Consensus 311 ~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~------------------~~~l~~~--------------------- 351 (714)
..|..+......++++..-...|++.++.+-... ......+
T Consensus 152 ~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e 231 (577)
T KOG1258|consen 152 PLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLE 231 (577)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhH
Confidence 4454554445556666666666665544111100 0000000
Q ss_pred --HHH----------------------HHHhHHHHHcCCHHHHHHHHHHHHHc-----CCCCCH--HHHHHHHHHHHHcC
Q 005108 352 --EKH----------------------LSKCTDARKVGDWKSALREGDAAIAA-----GADFSP--QLSMCRVEALLKLH 400 (714)
Q Consensus 352 --~~~----------------------~~~a~~~~~~g~~~~Al~~~~~al~~-----~p~~~~--~~~~~la~~~~~~g 400 (714)
+.. ...-.++.....+.+.+..++..++. .|.... ..|..........|
T Consensus 232 ~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g 311 (577)
T KOG1258|consen 232 ELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLG 311 (577)
T ss_pred HHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcc
Confidence 000 00001111112222222223322221 222222 22344556667889
Q ss_pred CHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccC-CCCHHHHHHHHhHHH
Q 005108 401 QLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQID-PRNVEVAVLLNNVKL 479 (714)
Q Consensus 401 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~l~~ 479 (714)
+++...-.|++++----.. ...|...+......|+.+-|-..+..+.++. +..+......
T Consensus 312 ~~~~~~~l~ercli~cA~Y--------------~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~----- 372 (577)
T KOG1258|consen 312 DFSRVFILFERCLIPCALY--------------DEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLE----- 372 (577)
T ss_pred cHHHHHHHHHHHHhHHhhh--------------HHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHH-----
Confidence 9999999999887544443 4578888888888899999998888888765 4444444443
Q ss_pred HHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHH---HHHHHHHhCCCC---HHHHHH
Q 005108 480 VARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVE---DSNQALLIQPNY---TKALLR 553 (714)
Q Consensus 480 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~---~~~~al~~~p~~---~~~~~~ 553 (714)
+......|++..|..+|++...-.|+...+-...+....++|+.+.+.. ++.....-..+. ...+..
T Consensus 373 -------a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~ 445 (577)
T KOG1258|consen 373 -------ARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVK 445 (577)
T ss_pred -------HHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHH
Confidence 6667778999999999999998889988888888888899999999884 333333221111 233444
Q ss_pred HHHHH-HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Q 005108 554 RAASN-SKLEKWADAVRDFEVLRRELPDDNEIAESLFHAQVSLK 596 (714)
Q Consensus 554 la~~~-~~~g~~~eA~~~~~~al~~~p~~~~~~~~L~~~~~~l~ 596 (714)
.+... .-.++.+.|...+.++++..|.+...+..+........
T Consensus 446 ~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 446 FARLRYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 45443 44578899999999999999999988887776655444
|
|
| >COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00015 Score=63.08 Aligned_cols=93 Identities=15% Similarity=0.209 Sum_probs=69.8
Q ss_pred hHHhhhccCCCceEEEeecCCCccccccchHHH---HHHhhC-CCcEEEEEeccc----------------CcchhhhCC
Q 005108 619 EQFRAAVSLPGVSVVHFKSASNLHCKQISPYVE---TLCGRY-PSINFLKVDIDE----------------SPGVAHAEN 678 (714)
Q Consensus 619 e~~~~~i~~~~~~vv~f~a~~c~~C~~~~p~l~---~l~~~~-~~~~~~~vd~d~----------------~~~l~~~~~ 678 (714)
+..+.+...+...++.|..+.|..|.++...+. ++.+-+ +.+.++.+++.. -++||+.|+
T Consensus 33 ~d~ksi~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~ 112 (182)
T COG2143 33 DDNKSISPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFA 112 (182)
T ss_pred HHHHhcCccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhc
Confidence 444556666778899999999999998876542 233322 346666666543 347899999
Q ss_pred ccccceEEEE-eCCeEEEEEcCC-CHHHHHHHHhh
Q 005108 679 VRIVPTFKIY-KNGSRMKEIVCP-SRDMLEHSVRH 711 (714)
Q Consensus 679 v~~~Pt~~~~-~~G~~~~~~~g~-~~~~l~~~~~~ 711 (714)
|+++|||++| ++|+.+..+-|. .++++...++-
T Consensus 113 vrstPtfvFfdk~Gk~Il~lPGY~ppe~Fl~vlkY 147 (182)
T COG2143 113 VRSTPTFVFFDKTGKTILELPGYMPPEQFLAVLKY 147 (182)
T ss_pred cccCceEEEEcCCCCEEEecCCCCCHHHHHHHHHH
Confidence 9999999999 899999999999 88877665543
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.048 Score=61.39 Aligned_cols=310 Identities=14% Similarity=-0.018 Sum_probs=184.6
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-----cHH
Q 005108 238 CGGDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRN-AAFRSNRAAALTGLGRIGEAVKECEEAVRLDPN-----YWR 311 (714)
Q Consensus 238 ~p~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-----~~~ 311 (714)
.+.-.+.+..-+..+...|...+|+.+.-.| .+|.. .......+.-++..++.. .+..+++.-|. ++.
T Consensus 343 ~~~~~~lH~~Aa~w~~~~g~~~eAI~hAlaA--~d~~~aa~lle~~~~~L~~~~~ls----ll~~~~~~lP~~~l~~~P~ 416 (894)
T COG2909 343 AARLKELHRAAAEWFAEHGLPSEAIDHALAA--GDPEMAADLLEQLEWQLFNGSELS----LLLAWLKALPAELLASTPR 416 (894)
T ss_pred CCchhHHHHHHHHHHHhCCChHHHHHHHHhC--CCHHHHHHHHHhhhhhhhcccchH----HHHHHHHhCCHHHHhhCch
Confidence 3445777888888888999999999886655 12221 112222233344444433 23333333332 355
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhhcCCCCh--HHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCC----C
Q 005108 312 AHQRLGSLLVRLGQVENARRHLCLSGQQADP--TEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADF----S 385 (714)
Q Consensus 312 a~~~la~~~~~~g~~~~A~~~~~~al~~~~~--~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~----~ 385 (714)
.....+.......++.+|...+.++...... .........+..--++.+....++.++|++..+.++..-|.. .
T Consensus 417 Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r 496 (894)
T COG2909 417 LVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSR 496 (894)
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhh
Confidence 6677788888899999999888877651111 111122223333445667788999999999999999886642 2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCc--HHHHHHHHHHHhc-
Q 005108 386 PQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGR--FENAVTAAEKAGQ- 462 (714)
Q Consensus 386 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~al~- 462 (714)
...+..++.+..-.|++++|..+...+.+..... ........+.+..+.++..+|+ +.+....|...-.
T Consensus 497 ~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~--------~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q 568 (894)
T COG2909 497 IVALSVLGEAAHIRGELTQALALMQQAEQMARQH--------DVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQ 568 (894)
T ss_pred hhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHc--------ccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 3445568899999999999999999887764332 1112234566677888888883 3333333333221
Q ss_pred ---cCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhcc----CCCC--H-HHHHHHHHHHHHhCCHHH
Q 005108 463 ---IDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRF----DPSN--S-VLYCNRAACWFKLGQWER 532 (714)
Q Consensus 463 ---~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~----~p~~--~-~~~~~la~~~~~~g~~~~ 532 (714)
..|...-.... ++.++...-+++.+.....+.++. .|.. . ..++.++.+++..|++++
T Consensus 569 ~l~q~~~~~f~~~~------------r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~ 636 (894)
T COG2909 569 HLEQKPRHEFLVRI------------RAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDK 636 (894)
T ss_pred HhhhcccchhHHHH------------HHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHH
Confidence 12222111111 133333333355555555555543 2322 2 233589999999999999
Q ss_pred HHHHHHHHHHhCCCC-H------HHHHHHHHHHHHhccHHHHHHHHHH
Q 005108 533 SVEDSNQALLIQPNY-T------KALLRRAASNSKLEKWADAVRDFEV 573 (714)
Q Consensus 533 A~~~~~~al~~~p~~-~------~~~~~la~~~~~~g~~~eA~~~~~~ 573 (714)
|...+.+...+.-+. + .++.-........|+.++|.....+
T Consensus 637 A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 637 ALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 999999887643221 1 1112222333566888888877766
|
|
| >PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00011 Score=58.34 Aligned_cols=70 Identities=20% Similarity=0.285 Sum_probs=55.9
Q ss_pred eecCCCccccccchHHHHHHhhCCCcEEEEEecccCcchhhhCCccccceEEEEeCCeEEEEEcC-C-CHHHHHHHHh
Q 005108 635 FKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKEIVC-P-SRDMLEHSVR 710 (714)
Q Consensus 635 f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~~~~g-~-~~~~l~~~~~ 710 (714)
+..++|+.|..+...++++..++. +.+--+|+.+.+++ ..|||+.+|+++| ||+.+ +.| . +.++|+++|+
T Consensus 5 v~~~~C~~C~~~~~~~~~~~~~~~-i~~ei~~~~~~~~~-~~ygv~~vPalvI--ng~~~--~~G~~p~~~el~~~l~ 76 (76)
T PF13192_consen 5 VFSPGCPYCPELVQLLKEAAEELG-IEVEIIDIEDFEEI-EKYGVMSVPALVI--NGKVV--FVGRVPSKEELKELLE 76 (76)
T ss_dssp EECSSCTTHHHHHHHHHHHHHHTT-EEEEEEETTTHHHH-HHTT-SSSSEEEE--TTEEE--EESS--HHHHHHHHHH
T ss_pred EeCCCCCCcHHHHHHHHHHHHhcC-CeEEEEEccCHHHH-HHcCCCCCCEEEE--CCEEE--EEecCCCHHHHHHHhC
Confidence 357779999999999999998884 77777778677777 9999999999944 88754 467 4 9999999885
|
... |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=97.67 E-value=8.6e-05 Score=48.44 Aligned_cols=32 Identities=31% Similarity=0.623 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Q 005108 515 VLYCNRAACWFKLGQWERSVEDSNQALLIQPN 546 (714)
Q Consensus 515 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 546 (714)
.+|+++|.+|..+|++++|+..|+++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 34555555555555555555555555555554
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0018 Score=58.97 Aligned_cols=92 Identities=18% Similarity=0.184 Sum_probs=73.9
Q ss_pred HHhHHhhCcCHHHHHHHHHHhhccCCCC----------------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Q 005108 486 RGNDLFKSERFTEACQAYGEGLRFDPSN----------------------SVLYCNRAACWFKLGQWERSVEDSNQALLI 543 (714)
Q Consensus 486 ~g~~~~~~g~~~~A~~~~~~al~~~p~~----------------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 543 (714)
.|......++.+.++..+++++.+...+ ..++..++..+...|++++|+..+++++..
T Consensus 12 ~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~ 91 (146)
T PF03704_consen 12 EARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALAL 91 (146)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Confidence 3666677888999999999999874321 244556788888999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Q 005108 544 QPNYTKALLRRAASNSKLEKWADAVRDFEVLRRE 577 (714)
Q Consensus 544 ~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 577 (714)
+|.+..++..+..+|..+|+..+|++.|+++.+.
T Consensus 92 dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~ 125 (146)
T PF03704_consen 92 DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRR 125 (146)
T ss_dssp STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999988654
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PRK00522 tpx lipid hydroperoxide peroxidase; Provisional | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00027 Score=65.82 Aligned_cols=82 Identities=12% Similarity=0.085 Sum_probs=63.3
Q ss_pred CCceEEEeecCC-CccccccchHHHHHHhhCCCcEEEEEeccc-----------------------CcchhhhCCccccc
Q 005108 628 PGVSVVHFKSAS-NLHCKQISPYVETLCGRYPSINFLKVDIDE-----------------------SPGVAHAENVRIVP 683 (714)
Q Consensus 628 ~~~~vv~f~a~~-c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~-----------------------~~~l~~~~~v~~~P 683 (714)
.+.+++.||+.| |+.|....|.+.++..++.++.++-|.+|. ...++..|+|...|
T Consensus 44 Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~~~~vv~vs~D~~~~~~~f~~~~~~~~~~~lsD~~~~~~~~~~gv~~~~ 123 (167)
T PRK00522 44 GKRKVLNIFPSIDTGVCATSVRKFNQEAAELDNTVVLCISADLPFAQKRFCGAEGLENVITLSDFRDHSFGKAYGVAIAE 123 (167)
T ss_pred CCEEEEEEEcCCCCCccHHHHHHHHHHHHHcCCcEEEEEeCCCHHHHHHHHHhCCCCCceEeecCCccHHHHHhCCeecc
Confidence 458899999999 999999999999999888778887776653 12568899998877
Q ss_pred ---------eEEEE-eCCeEEEEEcCC------CHHHHHHHH
Q 005108 684 ---------TFKIY-KNGSRMKEIVCP------SRDMLEHSV 709 (714)
Q Consensus 684 ---------t~~~~-~~G~~~~~~~g~------~~~~l~~~~ 709 (714)
+.+++ ++|+++...++. ..+++.+.|
T Consensus 124 ~~~~g~~~r~tfvId~~G~I~~~~~~~~~~~~~~~~~~l~~l 165 (167)
T PRK00522 124 GPLKGLLARAVFVLDENNKVVYSELVPEITNEPDYDAALAAL 165 (167)
T ss_pred cccCCceeeEEEEECCCCeEEEEEECCCcCCCCCHHHHHHHh
Confidence 66666 899999887643 345554444
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0033 Score=61.75 Aligned_cols=146 Identities=17% Similarity=0.136 Sum_probs=101.3
Q ss_pred hhhcCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHH
Q 005108 232 RNRGGICGGDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWR 311 (714)
Q Consensus 232 ~~~~~~~p~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 311 (714)
..+.++-|...+.-+..+......|++.+|...|..++...|++..+...++.||...|+.+.|...+...-....+.
T Consensus 124 ~~ld~~~~~~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~-- 201 (304)
T COG3118 124 QFLDKVLPAEEEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDK-- 201 (304)
T ss_pred HHHHHhcChHHHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhh--
Confidence 334445555677778888899999999999999999999999999999999999999999999888876542222111
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 005108 312 AHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMC 391 (714)
Q Consensus 312 a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~ 391 (714)
.+.. ....++.+.++-..++... +++.+..+|++ .+..+.
T Consensus 202 ~~~~----------l~a~i~ll~qaa~~~~~~~-----------------------------l~~~~aadPdd-~~aa~~ 241 (304)
T COG3118 202 AAHG----------LQAQIELLEQAAATPEIQD-----------------------------LQRRLAADPDD-VEAALA 241 (304)
T ss_pred HHHH----------HHHHHHHHHHHhcCCCHHH-----------------------------HHHHHHhCCCC-HHHHHH
Confidence 1111 1112344444433333222 24455667763 455556
Q ss_pred HHHHHHHcCCHHHHHHHhhccccCCCCC
Q 005108 392 RVEALLKLHQLEDAESSLSNIPKIEPST 419 (714)
Q Consensus 392 la~~~~~~g~~~~A~~~~~~al~~~p~~ 419 (714)
+|..|...|+.++|++.+-..++.+-..
T Consensus 242 lA~~~~~~g~~e~Ale~Ll~~l~~d~~~ 269 (304)
T COG3118 242 LADQLHLVGRNEAALEHLLALLRRDRGF 269 (304)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence 8999999999999999888888776554
|
|
| >cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00013 Score=57.23 Aligned_cols=68 Identities=24% Similarity=0.359 Sum_probs=51.3
Q ss_pred EEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCcchhhhC----CccccceEEEEeCCeEEEEEcCCCHHHHHH
Q 005108 632 VVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAHAE----NVRIVPTFKIYKNGSRMKEIVCPSRDMLEH 707 (714)
Q Consensus 632 vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~l~~~~----~v~~~Pt~~~~~~G~~~~~~~g~~~~~l~~ 707 (714)
++.|+.+||+.|..+...+.+. ++.|..+|++..+.....+ ++..+|++++ +| ..+.|++.++|++
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~-----~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~--~~---~~i~g~~~~~l~~ 71 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDER-----GIPFEEVDVDEDPEALEELKKLNGYRSVPVVVI--GD---EHLSGFRPDKLRA 71 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHC-----CCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEE--CC---EEEecCCHHHHHh
Confidence 4678899999999998887662 5677888888766554443 7899999875 45 3667888888877
Q ss_pred HH
Q 005108 708 SV 709 (714)
Q Consensus 708 ~~ 709 (714)
+|
T Consensus 72 ~~ 73 (73)
T cd02976 72 LL 73 (73)
T ss_pred hC
Confidence 54
|
In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou |
| >PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A | Back alignment and domain information |
|---|
Probab=97.58 E-value=3e-05 Score=62.70 Aligned_cols=68 Identities=21% Similarity=0.240 Sum_probs=48.0
Q ss_pred HhhhccCCCceEEEeecCCCccccccchHH---HHHHhh-CCCcEEEEEecccCcchhhhCCccccceEEEEe
Q 005108 621 FRAAVSLPGVSVVHFKSASNLHCKQISPYV---ETLCGR-YPSINFLKVDIDESPGVAHAENVRIVPTFKIYK 689 (714)
Q Consensus 621 ~~~~i~~~~~~vv~f~a~~c~~C~~~~p~l---~~l~~~-~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~ 689 (714)
+..+...+++++|+|+++||+.|+.+...+ .++... ..++.+++||+++.......++ .++|+++|+.
T Consensus 10 l~~A~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~~~~~~-~~~P~~~~ld 81 (82)
T PF13899_consen 10 LAEAKKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDPNAQFDR-QGYPTFFFLD 81 (82)
T ss_dssp HHHHHHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHHHHHHHH-CSSSEEEEEE
T ss_pred HHHHHHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCChhHHhCC-ccCCEEEEeC
Confidence 344455678999999999999999988655 233331 2468899999987555432222 6699999873
|
... |
| >cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00034 Score=65.68 Aligned_cols=85 Identities=14% Similarity=0.047 Sum_probs=64.5
Q ss_pred CCceEEEee-cCCCccccccchHHHHHHhhCC--CcEEEEEeccc----------------------------Ccchhhh
Q 005108 628 PGVSVVHFK-SASNLHCKQISPYVETLCGRYP--SINFLKVDIDE----------------------------SPGVAHA 676 (714)
Q Consensus 628 ~~~~vv~f~-a~~c~~C~~~~p~l~~l~~~~~--~~~~~~vd~d~----------------------------~~~l~~~ 676 (714)
.+.+++.|| +.||+.|....+.|.++..++. ++.++.|.+|. ...+++.
T Consensus 29 Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ 108 (173)
T cd03015 29 GKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDSHFSHLAWRNTPRKEGGLGKINFPLLADPKKKISRD 108 (173)
T ss_pred CCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCCHHHHHHHHHhhhhhCCccCcceeEEECCchhHHHH
Confidence 358899999 7999999999999999988874 46666665442 2235678
Q ss_pred CCcc------ccceEEEE-eCCeEEEEEcCC-----CHHHHHHHHhhh
Q 005108 677 ENVR------IVPTFKIY-KNGSRMKEIVCP-----SRDMLEHSVRHY 712 (714)
Q Consensus 677 ~~v~------~~Pt~~~~-~~G~~~~~~~g~-----~~~~l~~~~~~~ 712 (714)
|+|. .+|+.+++ ++|+++...++. +.+++.+.|+++
T Consensus 109 ~gv~~~~~~~~~p~~~lID~~G~I~~~~~~~~~~~~~~~~il~~l~~~ 156 (173)
T cd03015 109 YGVLDEEEGVALRGTFIIDPEGIIRHITVNDLPVGRSVDETLRVLDAL 156 (173)
T ss_pred hCCccccCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 8886 57777776 899999988654 457777777664
|
The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00018 Score=46.90 Aligned_cols=31 Identities=26% Similarity=0.570 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Q 005108 516 LYCNRAACWFKLGQWERSVEDSNQALLIQPN 546 (714)
Q Consensus 516 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 546 (714)
+|+.+|.++..+|++++|+++|+++++++|+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 4444455555555555555555555544444
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.012 Score=63.55 Aligned_cols=135 Identities=16% Similarity=0.069 Sum_probs=82.7
Q ss_pred cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHH-HHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCC
Q 005108 305 LDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVV-EKHLSKCTDARKVGDWKSALREGDAAIAAGAD 383 (714)
Q Consensus 305 ~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~-~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~ 383 (714)
.+| ++..|..+|......-.++-|...|-+...-........+..+ ..-..++.+....|++++|.+.|-.+-..+
T Consensus 688 dnP-HprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD-- 764 (1189)
T KOG2041|consen 688 DNP-HPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD-- 764 (1189)
T ss_pred cCC-chHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh--
Confidence 344 4677777777777777777777776655432222212222211 223445566666788888888886544322
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHh
Q 005108 384 FSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAG 461 (714)
Q Consensus 384 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 461 (714)
....++.++|+|-...++++..-.-+.+. ....++..+|..+..+..+++|.++|.+.-
T Consensus 765 -------LAielr~klgDwfrV~qL~r~g~~d~dD~------------~~e~A~r~ig~~fa~~~~We~A~~yY~~~~ 823 (1189)
T KOG2041|consen 765 -------LAIELRKKLGDWFRVYQLIRNGGSDDDDE------------GKEDAFRNIGETFAEMMEWEEAAKYYSYCG 823 (1189)
T ss_pred -------hhHHHHHhhhhHHHHHHHHHccCCCcchH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 13456777888888777776543322221 224578888888888888888888887754
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0033 Score=68.78 Aligned_cols=169 Identities=15% Similarity=0.003 Sum_probs=127.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHH------HHHHHHHHH----HCCCHHHHHHHHHHHHhcCCCcHHHHH
Q 005108 246 KRMGNELYRKGCFGEALSMYDKAISLAPRN-AAF------RSNRAAALT----GLGRIGEAVKECEEAVRLDPNYWRAHQ 314 (714)
Q Consensus 246 ~~~g~~~~~~g~~~~Al~~~~~al~~~p~~-~~~------~~~la~~~~----~~g~~~~A~~~~~~al~~~p~~~~a~~ 314 (714)
..+....--.||-+.+++.+.++.+..--. +.+ |+.....+. .....+.|.+.++...+..|+..-.++
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~ 271 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLF 271 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHH
Confidence 334444556799999999999997732111 111 111111111 245678999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 005108 315 RLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVE 394 (714)
Q Consensus 315 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~ 394 (714)
..|+++...|+.++|++.|++++.. ...+..+. .-.++.+++++....+|++|..++.+..+.+.-....+.+..|.
T Consensus 272 ~~gR~~~~~g~~~~Ai~~~~~a~~~--q~~~~Ql~-~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~ 348 (468)
T PF10300_consen 272 FEGRLERLKGNLEEAIESFERAIES--QSEWKQLH-HLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAA 348 (468)
T ss_pred HHHHHHHHhcCHHHHHHHHHHhccc--hhhHHhHH-HHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 9999999999999999999998741 22233333 24578899999999999999999999999877656666777899
Q ss_pred HHHHcCCH-------HHHHHHhhccccCCC
Q 005108 395 ALLKLHQL-------EDAESSLSNIPKIEP 417 (714)
Q Consensus 395 ~~~~~g~~-------~~A~~~~~~al~~~p 417 (714)
++...++. ++|.++|.++..+..
T Consensus 349 c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~ 378 (468)
T PF10300_consen 349 CLLMLGREEEAKEHKKEAEELFRKVPKLKQ 378 (468)
T ss_pred HHHhhccchhhhhhHHHHHHHHHHHHHHHh
Confidence 99999999 888888888765443
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00016 Score=47.14 Aligned_cols=32 Identities=34% Similarity=0.677 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 005108 243 EELKRMGNELYRKGCFGEALSMYDKAISLAPR 274 (714)
Q Consensus 243 ~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~ 274 (714)
..|+.+|.+++..|++++|+.+|+++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 34555555555555555555555555555554
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PRK11200 grxA glutaredoxin 1; Provisional | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00018 Score=58.60 Aligned_cols=74 Identities=19% Similarity=0.222 Sum_probs=54.9
Q ss_pred eEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCc----chhhhCC--ccccceEEEEeCCeEEEEEcCCCHHH
Q 005108 631 SVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESP----GVAHAEN--VRIVPTFKIYKNGSRMKEIVCPSRDM 704 (714)
Q Consensus 631 ~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~----~l~~~~~--v~~~Pt~~~~~~G~~~~~~~g~~~~~ 704 (714)
.++.|..+||+.|.+....|+++..++.++.+..+|+++.. ++....+ +..+|+++ .||+.+. |+ ++
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~if--i~g~~ig---g~--~~ 74 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEGISKADLEKTVGKPVETVPQIF--VDQKHIG---GC--TD 74 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEE--ECCEEEc---CH--HH
Confidence 36778999999999999999999988778899999998642 4544444 58999975 5887643 33 44
Q ss_pred HHHHHhh
Q 005108 705 LEHSVRH 711 (714)
Q Consensus 705 l~~~~~~ 711 (714)
|.+.++.
T Consensus 75 ~~~~~~~ 81 (85)
T PRK11200 75 FEAYVKE 81 (85)
T ss_pred HHHHHHH
Confidence 5555543
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00024 Score=46.25 Aligned_cols=33 Identities=33% Similarity=0.667 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 005108 243 EELKRMGNELYRKGCFGEALSMYDKAISLAPRN 275 (714)
Q Consensus 243 ~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~ 275 (714)
+.++.+|.+++..|++++|+++|+++++++|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 455566666666666666666666666666653
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00014 Score=64.18 Aligned_cols=69 Identities=16% Similarity=0.263 Sum_probs=58.3
Q ss_pred CCCceEEEeecC-CCccccccchHHHHHHhhCC--CcEEEEEeccc---------------------CcchhhhCCcc--
Q 005108 627 LPGVSVVHFKSA-SNLHCKQISPYVETLCGRYP--SINFLKVDIDE---------------------SPGVAHAENVR-- 680 (714)
Q Consensus 627 ~~~~~vv~f~a~-~c~~C~~~~p~l~~l~~~~~--~~~~~~vd~d~---------------------~~~l~~~~~v~-- 680 (714)
..+++++.||.. ||+.|....+.+.++..+++ ++.++.|..+. ...+++.|++.
T Consensus 24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 103 (124)
T PF00578_consen 24 KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEYGLPFPVLSDPDGELAKAFGIEDE 103 (124)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHHTCSSEEEEETTSHHHHHTTCEET
T ss_pred CCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccccchhhhhhhhccccccccCcchHHHHHcCCccc
Confidence 346899999998 99999999999999998885 68898888764 44568899999
Q ss_pred ----ccceEEEE-eCCeEEE
Q 005108 681 ----IVPTFKIY-KNGSRMK 695 (714)
Q Consensus 681 ----~~Pt~~~~-~~G~~~~ 695 (714)
.+|+++++ ++|+++.
T Consensus 104 ~~~~~~p~~~lid~~g~I~~ 123 (124)
T PF00578_consen 104 KDTLALPAVFLIDPDGKIRY 123 (124)
T ss_dssp TTSEESEEEEEEETTSBEEE
T ss_pred cCCceEeEEEEECCCCEEEe
Confidence 99988777 8888775
|
Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G .... |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.019 Score=59.54 Aligned_cols=194 Identities=17% Similarity=0.139 Sum_probs=122.2
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc----CCCcHHHHHHHHHHHHH---cCCHHHHHHHHHhhcC---CCChHHH
Q 005108 276 AAFRSNRAAALTGLGRIGEAVKECEEAVRL----DPNYWRAHQRLGSLLVR---LGQVENARRHLCLSGQ---QADPTEV 345 (714)
Q Consensus 276 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~a~~~la~~~~~---~g~~~~A~~~~~~al~---~~~~~~~ 345 (714)
+....++-.+|....+|+.-++..+..-.+ -++.....+.+|.++.+ .|+.++|+..+..++. ..+++..
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~ 220 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL 220 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH
Confidence 556677777899999999988888877666 34567778888999988 8999999999988665 3333333
Q ss_pred HHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHhhccc-cCCCCCCCchh
Q 005108 346 HRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIP-KIEPSTVSSSQ 424 (714)
Q Consensus 346 ~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al-~~~p~~~~~~~ 424 (714)
-....+....-...........++|+..|.++.+.+++..+.+ +++.++...|...+....++++. ++..-- ..
T Consensus 221 gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GI--N~AtLL~~~g~~~~~~~el~~i~~~l~~ll---g~ 295 (374)
T PF13281_consen 221 GLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGI--NAATLLMLAGHDFETSEELRKIGVKLSSLL---GR 295 (374)
T ss_pred HHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchH--HHHHHHHHcCCcccchHHHHHHHHHHHHHH---Hh
Confidence 3333333222221112234458999999999999997654333 45666666665333322222211 000000 00
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHH
Q 005108 425 TRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLL 474 (714)
Q Consensus 425 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 474 (714)
........+.+.+-.++.+..-.|++++|+..++++++..|........+
T Consensus 296 kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~l~St~ 345 (374)
T PF13281_consen 296 KGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWELESTL 345 (374)
T ss_pred hccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchhHHHHH
Confidence 00011112345566777888889999999999999999987765544433
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.13 Score=58.16 Aligned_cols=286 Identities=15% Similarity=0.030 Sum_probs=169.5
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc-
Q 005108 240 GDAEELKRMGNELYRKGCFGEALSMYDKAISLAPR---------NAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNY- 309 (714)
Q Consensus 240 ~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~- 309 (714)
.++......+.....+.++.+|..+..++...-+. .....-..|.+....|+.++|++..+.++..-|.+
T Consensus 413 ~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~ 492 (894)
T COG2909 413 STPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAA 492 (894)
T ss_pred hCchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccccc
Confidence 36777788899999999999999999998775443 14555667889999999999999999999887664
Q ss_pred ----HHHHHHHHHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCC--HHHHHHHHHHHHH----
Q 005108 310 ----WRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGD--WKSALREGDAAIA---- 379 (714)
Q Consensus 310 ----~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~--~~~Al~~~~~al~---- 379 (714)
..++..++.+..-.|++++|+.+...+.+.....+.. .-.+-..+..+.++...|+ +.+....|...-.
T Consensus 493 ~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~-~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~ 571 (894)
T COG2909 493 YRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVY-HLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLE 571 (894)
T ss_pred chhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhh
Confidence 5577888999999999999999888775411111111 1112233445556666673 2233333322221
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHH
Q 005108 380 AGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEK 459 (714)
Q Consensus 380 ~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 459 (714)
..|-. .......+.++...-+++.+.....+.++......... ......++.++.+++..|++++|...+.+
T Consensus 572 q~~~~-~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~-------~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~ 643 (894)
T COG2909 572 QKPRH-EFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQP-------LLSRLALSMLAELEFLRGDLDKALAQLDE 643 (894)
T ss_pred hcccc-hhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccch-------hHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 12221 11122233333333336777666666665543321110 11122346899999999999999999998
Q ss_pred HhccCCCC-HHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCC----HHHHHHHHHHHHHhCCHHHHH
Q 005108 460 AGQIDPRN-VEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSN----SVLYCNRAACWFKLGQWERSV 534 (714)
Q Consensus 460 al~~~p~~-~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~ 534 (714)
...+.-+. +.+++. +............+|+.++|.....+...-+-.+ ...+.+....-..+|-..+|.
T Consensus 644 ~~~l~~~~~~~~~~~------a~~~~v~~~lwl~qg~~~~a~~~l~~s~~~~~~~~~~~~~~~r~i~~~~~~Lg~~~eae 717 (894)
T COG2909 644 LERLLLNGQYHVDYL------AAAYKVKLILWLAQGDKELAAEWLLKSGDPDKANAHFPQLQWRLIAREQILLGILLEAE 717 (894)
T ss_pred HHHHhcCCCCCchHH------HHHHHhhHHHhcccCCHHHHHHHHHhccCchhhhhhcccccccccchHHHHHhhhhHHH
Confidence 76543322 111111 1111223455667899999888887743322111 122333444444555555555
Q ss_pred HHHHHH
Q 005108 535 EDSNQA 540 (714)
Q Consensus 535 ~~~~~a 540 (714)
......
T Consensus 718 ~al~~l 723 (894)
T COG2909 718 LALDEL 723 (894)
T ss_pred HHHHHH
Confidence 544443
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0022 Score=58.27 Aligned_cols=94 Identities=26% Similarity=0.196 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----------------------HHHHHHHHHHHHHCCCHHHHHHHHHH
Q 005108 244 ELKRMGNELYRKGCFGEALSMYDKAISLAPRN----------------------AAFRSNRAAALTGLGRIGEAVKECEE 301 (714)
Q Consensus 244 ~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~----------------------~~~~~~la~~~~~~g~~~~A~~~~~~ 301 (714)
.+...|......++...++..+++++.+...+ ..+...++..+...|++++|+..+++
T Consensus 8 ~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 87 (146)
T PF03704_consen 8 ALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQR 87 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 34455777778899999999999999874321 34556677888899999999999999
Q ss_pred HHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhhc
Q 005108 302 AVRLDPNYWRAHQRLGSLLVRLGQVENARRHLCLSG 337 (714)
Q Consensus 302 al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al 337 (714)
++..+|.+..+|..+..+|...|+..+|++.|++..
T Consensus 88 ~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 88 ALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 999999999999999999999999999999997763
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.079 Score=65.65 Aligned_cols=107 Identities=13% Similarity=0.046 Sum_probs=78.9
Q ss_pred HHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CC----------C------
Q 005108 485 ARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQ-PN----------Y------ 547 (714)
Q Consensus 485 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~----------~------ 547 (714)
+.|.+..+.|+++.|..++-+|.+.. -+.++...|..++..|+-..|+..+++.++.+ |+ .
T Consensus 1675 qsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~ 1752 (2382)
T KOG0890|consen 1675 QSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIF 1752 (2382)
T ss_pred HHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhh
Confidence 44889999999999999999998876 57899999999999999999999999999653 32 1
Q ss_pred HHHHHHHHHHHHHhccH--HHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005108 548 TKALLRRAASNSKLEKW--ADAVRDFEVLRRELPDDNEIAESLFHAQV 593 (714)
Q Consensus 548 ~~~~~~la~~~~~~g~~--~eA~~~~~~al~~~p~~~~~~~~L~~~~~ 593 (714)
..+.+.++......+++ ++-+++|..+.+++|....-...+++-+.
T Consensus 1753 ~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy~ 1800 (2382)
T KOG0890|consen 1753 KKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLGKYYD 1800 (2382)
T ss_pred hhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHHHHHH
Confidence 12333344444444543 34578899999999966555555543333
|
|
| >PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00066 Score=62.43 Aligned_cols=80 Identities=11% Similarity=-0.008 Sum_probs=59.2
Q ss_pred CCceEEEeecC-CCccccccchHHHHHHhhCC--CcEEEEEeccc---------------------CcchhhhCCcccc-
Q 005108 628 PGVSVVHFKSA-SNLHCKQISPYVETLCGRYP--SINFLKVDIDE---------------------SPGVAHAENVRIV- 682 (714)
Q Consensus 628 ~~~~vv~f~a~-~c~~C~~~~p~l~~l~~~~~--~~~~~~vd~d~---------------------~~~l~~~~~v~~~- 682 (714)
.+++++.||+. ||+.|....+.+.++..++. ++.++-|..|. ...+++.|+|..+
T Consensus 30 gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~ 109 (154)
T PRK09437 30 GQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDKPEKLSRFAEKELLNFTLLSDEDHQVAEQFGVWGEK 109 (154)
T ss_pred CCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCCeEEECCCchHHHHhCCCccc
Confidence 45899999986 68889998898888888773 57777776653 4456778898764
Q ss_pred -----------ceEEEE-eCCeEEEEEcCC-CHHHHHH
Q 005108 683 -----------PTFKIY-KNGSRMKEIVCP-SRDMLEH 707 (714)
Q Consensus 683 -----------Pt~~~~-~~G~~~~~~~g~-~~~~l~~ 707 (714)
|+.+++ ++|+++..+.|+ ..+.+.+
T Consensus 110 ~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~~~~~~ 147 (154)
T PRK09437 110 KFMGKTYDGIHRISFLIDADGKIEHVFDKFKTSNHHDV 147 (154)
T ss_pred ccccccccCcceEEEEECCCCEEEEEEcCCCcchhHHH
Confidence 555566 899999999987 3444333
|
|
| >PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00021 Score=59.18 Aligned_cols=92 Identities=17% Similarity=0.143 Sum_probs=65.3
Q ss_pred eehhhhHHhhhccC--CCceEEEeecCCCccccccchHHHHHHhhCCC-cEEEEEeccc----CcchhhhCCcc-ccceE
Q 005108 614 EVSSLEQFRAAVSL--PGVSVVHFKSASNLHCKQISPYVETLCGRYPS-INFLKVDIDE----SPGVAHAENVR-IVPTF 685 (714)
Q Consensus 614 ~i~~~e~~~~~i~~--~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~-~~~~~vd~d~----~~~l~~~~~v~-~~Pt~ 685 (714)
.+.+.++++.++.. .+++++.=..+.|+-..+....+++.....++ +.++.+|+-+ +..+|..|||. .-|.+
T Consensus 3 ~L~t~eql~~i~~~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~HeSPQ~ 82 (105)
T PF11009_consen 3 PLTTEEQLEEILEESKEKPVLIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVKHESPQV 82 (105)
T ss_dssp E--SHHHHHHHHHH---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT----SSEE
T ss_pred ccCCHHHHHHHHHhcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCCcCCCcE
Confidence 45667788877765 66777777788999999999999999888876 9999999887 55679999999 57899
Q ss_pred EEEeCCeEEEEEcCC--CHHHH
Q 005108 686 KIYKNGSRMKEIVCP--SRDML 705 (714)
Q Consensus 686 ~~~~~G~~~~~~~g~--~~~~l 705 (714)
++++||+.+..-.-. +.+.|
T Consensus 83 ili~~g~~v~~aSH~~It~~~l 104 (105)
T PF11009_consen 83 ILIKNGKVVWHASHWDITAEAL 104 (105)
T ss_dssp EEEETTEEEEEEEGGG-SHHHH
T ss_pred EEEECCEEEEECccccCCHHhc
Confidence 999999999765433 55554
|
The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A. |
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.014 Score=53.85 Aligned_cols=94 Identities=6% Similarity=-0.031 Sum_probs=76.2
Q ss_pred HHHhHHhhCcCHHHHHHHHHHhhccCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHH
Q 005108 485 ARGNDLFKSERFTEACQAYGEGLRFDPSN---SVLYCNRAACWFKLGQWERSVEDSNQALLIQPNY-TKALLRRAASNSK 560 (714)
Q Consensus 485 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~ 560 (714)
.++..+...+++++|+..++.++....+. ..+-..+|.+...+|++++|+..++.... +.. .......|.++..
T Consensus 94 ~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~--~~w~~~~~elrGDill~ 171 (207)
T COG2976 94 ELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKE--ESWAAIVAELRGDILLA 171 (207)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc--ccHHHHHHHHhhhHHHH
Confidence 55888999999999999999998764433 45677899999999999999998876432 222 2345678999999
Q ss_pred hccHHHHHHHHHHHHHhCCC
Q 005108 561 LEKWADAVRDFEVLRRELPD 580 (714)
Q Consensus 561 ~g~~~eA~~~~~~al~~~p~ 580 (714)
.|+.++|+..|+++++.+++
T Consensus 172 kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 172 KGDKQEARAAYEKALESDAS 191 (207)
T ss_pred cCchHHHHHHHHHHHHccCC
Confidence 99999999999999999843
|
|
| >TIGR02180 GRX_euk Glutaredoxin | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00018 Score=58.40 Aligned_cols=60 Identities=22% Similarity=0.337 Sum_probs=46.2
Q ss_pred EEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCc-----chhhhCCccccceEEEEeCCeEE
Q 005108 632 VVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESP-----GVAHAENVRIVPTFKIYKNGSRM 694 (714)
Q Consensus 632 vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~-----~l~~~~~v~~~Pt~~~~~~G~~~ 694 (714)
|+.|+++||+.|+.+.+.++++... +.+.++.||.+... .+.+.+++..+|++ |.+|+.+
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~i~-~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v--~i~g~~i 65 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLNVK-PAYEVVELDQLSNGSEIQDYLEEITGQRTVPNI--FINGKFI 65 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCC-CCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeE--EECCEEE
Confidence 4679999999999999999998732 23678888876543 26677899999997 4578654
|
This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses. |
| >KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.067 Score=51.63 Aligned_cols=166 Identities=10% Similarity=-0.051 Sum_probs=100.1
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH-HHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcH
Q 005108 372 REGDAAIAAGADFSPQLSMCRVEALLKLHQLE-DAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRF 450 (714)
Q Consensus 372 ~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~-~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 450 (714)
++++++++.+|.+ .++|..+-.+....|++. .-+++.+.++..+..+ ..+|..+-.+....+.+
T Consensus 99 ~~l~eI~e~npKN-YQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKN--------------YHaWshRqW~~r~F~~~ 163 (318)
T KOG0530|consen 99 EYLDEIIEDNPKN-YQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKN--------------YHAWSHRQWVLRFFKDY 163 (318)
T ss_pred HHHHHHHHhCccc-hhHHHHHHHHHHHhcCcccchHHHHHHHHhccccc--------------hhhhHHHHHHHHHHhhH
Confidence 4444555555542 333333444455555555 6677777788777777 67788888888888889
Q ss_pred HHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHH-hC-
Q 005108 451 ENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFK-LG- 528 (714)
Q Consensus 451 ~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g- 528 (714)
+.-+.+..+.++.+-.+..+|....-+- ....-....-..+.-+.+..+.|.+.|+|..+|..|.-++.. .|
T Consensus 164 ~~EL~y~~~Lle~Di~NNSAWN~Ryfvi------~~~~~~~~~~~le~El~yt~~~I~~vP~NeSaWnYL~G~l~~d~gl 237 (318)
T KOG0530|consen 164 EDELAYADELLEEDIRNNSAWNQRYFVI------TNTKGVISKAELERELNYTKDKILLVPNNESAWNYLKGLLELDSGL 237 (318)
T ss_pred HHHHHHHHHHHHHhhhccchhheeeEEE------EeccCCccHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhccCC
Confidence 9999999999988877777775320000 000000001123455667778888999999999998888876 33
Q ss_pred -CHHHHHHHHHHHH-HhCCCCHHHHHHHHHHH
Q 005108 529 -QWERSVEDSNQAL-LIQPNYTKALLRRAASN 558 (714)
Q Consensus 529 -~~~~A~~~~~~al-~~~p~~~~~~~~la~~~ 558 (714)
.+.+-...+...+ +..-..+..+-.+...|
T Consensus 238 ~s~s~vv~f~~~l~~~~~~~sP~lla~l~d~~ 269 (318)
T KOG0530|consen 238 SSDSKVVSFVENLYLQLPKRSPFLLAFLLDLY 269 (318)
T ss_pred cCCchHHHHHHHHhhccCCCChhHHHHHHHHH
Confidence 2334444444443 33334455555555555
|
|
| >KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00011 Score=68.80 Aligned_cols=91 Identities=20% Similarity=0.331 Sum_probs=76.5
Q ss_pred hhHHhhhccCCCceEEEeecCCCccccccchHHHHHHhhCC--CcEEEEEecccCcchhhhCCccccceEEEEeCCeEEE
Q 005108 618 LEQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYP--SINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMK 695 (714)
Q Consensus 618 ~e~~~~~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~--~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~ 695 (714)
.+++... ..+-.++.|.++||+.|+...|.+..+..--- ++.+.+||+..++-|.-+|-|..+||+.-.|+|. +.
T Consensus 31 eenw~~~--l~gewmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~npgLsGRF~vtaLptIYHvkDGe-Fr 107 (248)
T KOG0913|consen 31 EENWKEL--LTGEWMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTNPGLSGRFLVTALPTIYHVKDGE-FR 107 (248)
T ss_pred ccchhhh--hchHHHHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEeccccceeeEEEecceEEEeeccc-cc
Confidence 3455555 34678899999999999999999988775332 4889999999999999999999999999999998 77
Q ss_pred EEcCC-CHHHHHHHHhh
Q 005108 696 EIVCP-SRDMLEHSVRH 711 (714)
Q Consensus 696 ~~~g~-~~~~l~~~~~~ 711 (714)
++.|. +...+..++++
T Consensus 108 rysgaRdk~dfisf~~~ 124 (248)
T KOG0913|consen 108 RYSGARDKNDFISFEEH 124 (248)
T ss_pred cccCcccchhHHHHHHh
Confidence 88899 88888887764
|
|
| >PRK13703 conjugal pilus assembly protein TraF; Provisional | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.015 Score=56.94 Aligned_cols=82 Identities=16% Similarity=0.237 Sum_probs=64.8
Q ss_pred ceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEeccc--Cc---------chhhhCCccccceEEEE-eCC-eEEEE
Q 005108 630 VSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDE--SP---------GVAHAENVRIVPTFKIY-KNG-SRMKE 696 (714)
Q Consensus 630 ~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~--~~---------~l~~~~~v~~~Pt~~~~-~~G-~~~~~ 696 (714)
..++.|+...|+.|.++.|+|+.+..+|. +.++-|.+|. .+ ..++.++|..+|+++++ +++ +...-
T Consensus 145 ~GL~fFy~s~Cp~C~~~aPil~~fa~~yg-~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv~~~t~~~~pv 223 (248)
T PRK13703 145 YGLMFFYRGQDPIDGQLAQVINDFRDTYG-LSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLVDPKSGSVRPL 223 (248)
T ss_pred ceEEEEECCCCchhHHHHHHHHHHHHHhC-CeEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEEECCCCcEEEE
Confidence 67899999999999999999999999984 6677777765 22 25678999999998777 554 44444
Q ss_pred EcCC-CHHHHHHHHhhh
Q 005108 697 IVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 697 ~~g~-~~~~l~~~~~~~ 712 (714)
-.|+ +.++|.+.|..+
T Consensus 224 ~~G~iS~deL~~Ri~~v 240 (248)
T PRK13703 224 SYGFITQDDLAKRFLNV 240 (248)
T ss_pred eeccCCHHHHHHHHHHH
Confidence 5588 999998877654
|
|
| >cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00052 Score=62.65 Aligned_cols=71 Identities=14% Similarity=0.195 Sum_probs=54.9
Q ss_pred CceEEEeecCCCccccccchHHHHHHhhC--CCcEEEEEeccc---------------------CcchhhhCCcc-----
Q 005108 629 GVSVVHFKSASNLHCKQISPYVETLCGRY--PSINFLKVDIDE---------------------SPGVAHAENVR----- 680 (714)
Q Consensus 629 ~~~vv~f~a~~c~~C~~~~p~l~~l~~~~--~~~~~~~vd~d~---------------------~~~l~~~~~v~----- 680 (714)
.++++.||+.||+.|+...|.|.++..++ .++.++-|..+. ...++++|++.
T Consensus 25 ~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~~g~~~~~~~ 104 (149)
T cd02970 25 PVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESPEKLEAFDKGKFLPFPVYADPDRKLYRALGLVRSLPW 104 (149)
T ss_pred CEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCHHHHHHHHHhcCCCCeEEECCchhHHHHcCceecCcH
Confidence 35556667999999999999999999888 358888777654 34457788884
Q ss_pred ------------------------ccceEEEE-eCCeEEEEEcC
Q 005108 681 ------------------------IVPTFKIY-KNGSRMKEIVC 699 (714)
Q Consensus 681 ------------------------~~Pt~~~~-~~G~~~~~~~g 699 (714)
.+|..+|+ ++|.++...+|
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~fvid~~g~i~~~~~~ 148 (149)
T cd02970 105 SNTPRALWKNAAIGFRGNDEGDGLQLPGVFVIGPDGTILFAHVD 148 (149)
T ss_pred HHHHHHHhhCcccccccCCCCcccccceEEEECCCCeEEEEecC
Confidence 78887777 78988887765
|
Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins. |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.18 Score=51.25 Aligned_cols=54 Identities=30% Similarity=0.297 Sum_probs=40.0
Q ss_pred HHHcCCHHHHHHHHHHHHHhC----CCC----HHHHHHHHHHHHHCC-CHHHHHHHHHHHHhc
Q 005108 252 LYRKGCFGEALSMYDKAISLA----PRN----AAFRSNRAAALTGLG-RIGEAVKECEEAVRL 305 (714)
Q Consensus 252 ~~~~g~~~~Al~~~~~al~~~----p~~----~~~~~~la~~~~~~g-~~~~A~~~~~~al~~ 305 (714)
...+|+++.|..+|.|+-... |+. ...+++.|......+ ++++|...++++.++
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~ 65 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDI 65 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 356788899999988886654 222 456677777777788 888888888888765
|
It is also involved in sporulation []. |
| >KOG3414 consensus Component of the U4/U6 | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0011 Score=55.44 Aligned_cols=95 Identities=18% Similarity=0.244 Sum_probs=72.9
Q ss_pred hhhhHHhhhcc--CCCceEEEeecCCCccccccchHHHHHHhhCCC-cEEEEEecccCcchhhhCCccccceEEEEeCCe
Q 005108 616 SSLEQFRAAVS--LPGVSVVHFKSASNLHCKQISPYVETLCGRYPS-INFLKVDIDESPGVAHAENVRIVPTFKIYKNGS 692 (714)
Q Consensus 616 ~~~e~~~~~i~--~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~-~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~ 692 (714)
.+.....+++. ..+++|+-|.-.|.+.|-++...|.+++++..+ ..++.||+++-++..+-|++...|++.+|-|++
T Consensus 9 ~s~~~VdqaI~~t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnfa~IylvdideV~~~~~~~~l~~p~tvmfFfn~k 88 (142)
T KOG3414|consen 9 HSGWEVDQAILSTEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNFAVIYLVDIDEVPDFVKMYELYDPPTVMFFFNNK 88 (142)
T ss_pred ccHHHHHHHHhcccceEEEEEecCCCCchHhhHHHHHHHHHHHHhhceEEEEEecchhhhhhhhhcccCCceEEEEEcCc
Confidence 34444555553 346899999999999999999999999999988 557789999999999999999999988776665
Q ss_pred EEE---------EEcCC--CHHHHHHHHh
Q 005108 693 RMK---------EIVCP--SRDMLEHSVR 710 (714)
Q Consensus 693 ~~~---------~~~g~--~~~~l~~~~~ 710 (714)
-+. ++.++ +++++.+.|+
T Consensus 89 HmkiD~gtgdn~Kin~~~~~kq~~Idiie 117 (142)
T KOG3414|consen 89 HMKIDLGTGDNNKINFAFEDKQEFIDIIE 117 (142)
T ss_pred eEEEeeCCCCCceEEEEeccHHHHHHHHH
Confidence 443 33344 5566665554
|
U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning] |
| >KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.015 Score=56.01 Aligned_cols=174 Identities=17% Similarity=0.046 Sum_probs=126.2
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHH
Q 005108 361 ARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVR 440 (714)
Q Consensus 361 ~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~l 440 (714)
+.+...-..|++....+|.++|.+-..+.+..-.+-....+..+-++++.++++.+|.+ ..+|..+
T Consensus 53 ~~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKN--------------YQvWHHR 118 (318)
T KOG0530|consen 53 IAKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKN--------------YQVWHHR 118 (318)
T ss_pred HhccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccc--------------hhHHHHH
Confidence 34455667788888889999988766665544444444556788888899999888988 7788888
Q ss_pred HHHHHHhCcHH-HHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHH
Q 005108 441 AQIEMALGRFE-NAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCN 519 (714)
Q Consensus 441 a~~~~~~g~~~-~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 519 (714)
-.+....|++. .-++..++++..+..+..+|... -.+...-+.|+.-+.+..+.|+.+-.|-.+|+.
T Consensus 119 r~ive~l~d~s~rELef~~~~l~~DaKNYHaWshR------------qW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~ 186 (318)
T KOG0530|consen 119 RVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHR------------QWVLRFFKDYEDELAYADELLEEDIRNNSAWNQ 186 (318)
T ss_pred HHHHHHhcCcccchHHHHHHHHhccccchhhhHHH------------HHHHHHHhhHHHHHHHHHHHHHHhhhccchhhe
Confidence 88888888877 77888888888888888887754 556666677888888888888877666556555
Q ss_pred HHHHHHH-h-----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005108 520 RAACWFK-L-----GQWERSVEDSNQALLIQPNYTKALLRRAASNSK 560 (714)
Q Consensus 520 la~~~~~-~-----g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 560 (714)
+-.+... . -..+.-+.+..+.+.+.|++..+|..|.-++..
T Consensus 187 Ryfvi~~~~~~~~~~~le~El~yt~~~I~~vP~NeSaWnYL~G~l~~ 233 (318)
T KOG0530|consen 187 RYFVITNTKGVISKAELERELNYTKDKILLVPNNESAWNYLKGLLEL 233 (318)
T ss_pred eeEEEEeccCCccHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHh
Confidence 4222222 1 124455667778888889988888888777765
|
|
| >TIGR03137 AhpC peroxiredoxin | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.001 Score=63.18 Aligned_cols=84 Identities=11% Similarity=0.048 Sum_probs=62.0
Q ss_pred CCceEEEee-cCCCccccccchHHHHHHhhCC--CcEEEEEeccc-------------------------CcchhhhCCc
Q 005108 628 PGVSVVHFK-SASNLHCKQISPYVETLCGRYP--SINFLKVDIDE-------------------------SPGVAHAENV 679 (714)
Q Consensus 628 ~~~~vv~f~-a~~c~~C~~~~p~l~~l~~~~~--~~~~~~vd~d~-------------------------~~~l~~~~~v 679 (714)
++++++.|| +.||+.|....+.+.++..++. ++.++-|.+|. ...+++.|+|
T Consensus 31 Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~l~fpllsD~~~~~a~~~gv 110 (187)
T TIGR03137 31 GKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDPTGVLTRNFGV 110 (187)
T ss_pred CCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHhhhhhccCcceeEEECCccHHHHHhCC
Confidence 457899999 9999999999999988888773 56666665542 2345778998
Q ss_pred c------ccceEEEE-eCCeEEEEEcCC-----CHHHHHHHHhh
Q 005108 680 R------IVPTFKIY-KNGSRMKEIVCP-----SRDMLEHSVRH 711 (714)
Q Consensus 680 ~------~~Pt~~~~-~~G~~~~~~~g~-----~~~~l~~~~~~ 711 (714)
. ..|+.+|+ ++|+++...+.. +.++|.+.|+.
T Consensus 111 ~~~~~g~~~p~tfiID~~G~I~~~~~~~~~~~~~~~~ll~~l~~ 154 (187)
T TIGR03137 111 LIEEAGLADRGTFVIDPEGVIQAVEITDNGIGRDASELLRKIKA 154 (187)
T ss_pred cccCCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHH
Confidence 6 46876666 899999876432 66677666654
|
This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue. |
| >cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.00073 Score=61.74 Aligned_cols=72 Identities=18% Similarity=0.092 Sum_probs=55.9
Q ss_pred CceEEEee-cCCCccccccchHHHHHHhhCC--CcEEEEEeccc---------------------C--cchhhhCCcc--
Q 005108 629 GVSVVHFK-SASNLHCKQISPYVETLCGRYP--SINFLKVDIDE---------------------S--PGVAHAENVR-- 680 (714)
Q Consensus 629 ~~~vv~f~-a~~c~~C~~~~p~l~~l~~~~~--~~~~~~vd~d~---------------------~--~~l~~~~~v~-- 680 (714)
+++++.|| +.||+.|....|.+.++..++. ++.++.|..+. . ..++..|++.
T Consensus 29 k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~g~~~~ 108 (149)
T cd03018 29 KPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDSPFSLRAWAEENGLTFPLLSDFWPHGEVAKAYGVFDE 108 (149)
T ss_pred CeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCCHHHHHHHHHhcCCCceEecCCCchhHHHHHhCCccc
Confidence 57777777 8999999999999999988884 57777776553 3 5577888887
Q ss_pred --ccc--eEEEE-eCCeEEEEEcCC
Q 005108 681 --IVP--TFKIY-KNGSRMKEIVCP 700 (714)
Q Consensus 681 --~~P--t~~~~-~~G~~~~~~~g~ 700 (714)
++| +++++ ++|+.+....|.
T Consensus 109 ~~~~~~~~~~lid~~G~v~~~~~~~ 133 (149)
T cd03018 109 DLGVAERAVFVIDRDGIIRYAWVSD 133 (149)
T ss_pred cCCCccceEEEECCCCEEEEEEecC
Confidence 333 65666 899999998886
|
AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers. |
| >KOG3783 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.35 Score=51.79 Aligned_cols=307 Identities=13% Similarity=-0.006 Sum_probs=164.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-------HHHCCC--HHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 005108 248 MGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAA-------LTGLGR--IGEAVKECEEAVRLDPNYWRAHQRLGS 318 (714)
Q Consensus 248 ~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~-------~~~~g~--~~~A~~~~~~al~~~p~~~~a~~~la~ 318 (714)
+-...-..|+-++.+..+-++-..-+.....-..+..+ +...+. .+...+.+....+..|+++-..+..+.
T Consensus 196 ~l~vvgf~g~r~egl~~Lw~~a~~~s~~~~i~~l~L~~y~~~~~~~~~~p~~d~~~~~~~Ll~~~~~~p~ga~wll~~ar 275 (546)
T KOG3783|consen 196 LLSVVGFSGDRDEGLRLLWEAAKQRNFRGAIALLALLCYYQFISFVLGTPNPDGEECEKALKKYRKRYPKGALWLLMEAR 275 (546)
T ss_pred HHHHHhhcccHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHHHHcCCCCccHHHHHHHhHHHHHhCCCCccHHHHHHH
Confidence 33444556777777777766655443222221111222 222222 245555666666778998888889999
Q ss_pred HHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH-HHHHH
Q 005108 319 LLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCR-VEALL 397 (714)
Q Consensus 319 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~l-a~~~~ 397 (714)
.+...|+.+.|+..++..+. ..+..+ ..-.++.+++.+....+|..|...+........- +..+|..+ |.||+
T Consensus 276 ~l~~~g~~eaa~~~~~~~v~----~~~kQ~-~~l~~fE~aw~~v~~~~~~~aad~~~~L~desdW-S~a~Y~Yfa~cc~l 349 (546)
T KOG3783|consen 276 ILSIKGNSEAAIDMESLSIP----IRMKQV-KSLMVFERAWLSVGQHQYSRAADSFDLLRDESDW-SHAFYTYFAGCCLL 349 (546)
T ss_pred HHHHcccHHHHHHHHHhccc----HHHHHH-HHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhh-hHHHHHHHHHHHHh
Confidence 99999998888888887775 222222 2234667888888899999999999888776543 33333333 34543
Q ss_pred HcC--------CHHHHHHHhhcc---ccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCC
Q 005108 398 KLH--------QLEDAESSLSNI---PKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPR 466 (714)
Q Consensus 398 ~~g--------~~~~A~~~~~~a---l~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 466 (714)
..+ +-++|..+++.. +...|.+.+.. .. . ..+|.++-.+. ..++.
T Consensus 350 ~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E----------~f-~------------~RKverf~~~~-~~~~~ 405 (546)
T KOG3783|consen 350 QNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLE----------KF-I------------VRKVERFVKRG-PLNAS 405 (546)
T ss_pred ccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchh----------HH-H------------HHHHHHHhccc-ccccc
Confidence 322 222222222211 11111211100 00 0 01111111111 01111
Q ss_pred C------HHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhcc-CCCC-HHHHHHHHHHHHHhCCHHHHHHHHH
Q 005108 467 N------VEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRF-DPSN-SVLYCNRAACWFKLGQWERSVEDSN 538 (714)
Q Consensus 467 ~------~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~-~p~~-~~~~~~la~~~~~~g~~~~A~~~~~ 538 (714)
. .+..+.++ |.--....+.+++...++. -+. ++++ .--++.+|.++..+|+-..|..+|+
T Consensus 406 ~~la~P~~El~Y~Wn-----------gf~~~s~~~l~k~~~~~~~-~~~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~ 473 (546)
T KOG3783|consen 406 ILLASPYYELAYFWN-----------GFSRMSKNELEKMRAELEN-PKIDDSDDEGLKYLLKGVILRNLGDSEVAPKCFK 473 (546)
T ss_pred ccccchHHHHHHHHh-----------hcccCChhhHHHHHHHHhc-cCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 1 11111111 1111111122222222211 112 3333 2345567999999999999999998
Q ss_pred HHHHh---CCC----CHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Q 005108 539 QALLI---QPN----YTKALLRRAASNSKLEK-WADAVRDFEVLRRELPDDNEIAESLFHAQVSLK 596 (714)
Q Consensus 539 ~al~~---~p~----~~~~~~~la~~~~~~g~-~~eA~~~~~~al~~~p~~~~~~~~L~~~~~~l~ 596 (714)
..++. ... .+.++|.+|..|..++. ..++..++.+|.+...++.---....+++..+.
T Consensus 474 i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY~lenRLh~rIqAAl~ 539 (546)
T KOG3783|consen 474 IQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASDYELENRLHMRIQAALH 539 (546)
T ss_pred HHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhccccchhhHHHHHHHHHHH
Confidence 88742 111 25789999999999998 999999999999887555433333344444443
|
|
| >KOG3783 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.062 Score=57.24 Aligned_cols=246 Identities=14% Similarity=0.047 Sum_probs=137.8
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc----HHHHHHHHHHHHHcCCHHHHHHHHH
Q 005108 259 GEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNY----WRAHQRLGSLLVRLGQVENARRHLC 334 (714)
Q Consensus 259 ~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~a~~~la~~~~~~g~~~~A~~~~~ 334 (714)
+...+.+....+..|+++...+..+..+...|+.+.|+..++..+. +.. .-.++.+|.++..+.+|..|...+.
T Consensus 250 ~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~--~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~ 327 (546)
T KOG3783|consen 250 EECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP--IRMKQVKSLMVFERAWLSVGQHQYSRAADSFD 327 (546)
T ss_pred HHHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 4455555556677899999999999999999998888888888877 322 3456778888888999999988887
Q ss_pred hhcCCCChHHHHHHHHHHHHHHHhHH--------HHHcCCHHHHHHHHHHH---HHcCCCCCHHHHHHHHHHHHHcCCHH
Q 005108 335 LSGQQADPTEVHRLQVVEKHLSKCTD--------ARKVGDWKSALREGDAA---IAAGADFSPQLSMCRVEALLKLHQLE 403 (714)
Q Consensus 335 ~al~~~~~~~~~~l~~~~~~~~~a~~--------~~~~g~~~~Al~~~~~a---l~~~p~~~~~~~~~la~~~~~~g~~~ 403 (714)
...+..+-.... ..++. +.+ ....++-+.|-.+++.. +...|.+.+. +..-..
T Consensus 328 ~L~desdWS~a~-----Y~Yfa-~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~----------E~f~~R 391 (546)
T KOG3783|consen 328 LLRDESDWSHAF-----YTYFA-GCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPL----------EKFIVR 391 (546)
T ss_pred HHHhhhhhhHHH-----HHHHH-HHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCch----------hHHHHH
Confidence 765432222111 11111 111 11122333333333322 2221211110 001112
Q ss_pred HHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHh--CcHHHHH---HHHHHHhcc-CCCCHHHHHHHHhH
Q 005108 404 DAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMAL--GRFENAV---TAAEKAGQI-DPRNVEVAVLLNNV 477 (714)
Q Consensus 404 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~--g~~~~A~---~~~~~al~~-~p~~~~~~~~l~~l 477 (714)
++.++-.+.. .++... ... -++.++.++... ...++.. ..++ .-+. ++++....+.+
T Consensus 392 Kverf~~~~~-~~~~~~-------la~-----P~~El~Y~Wngf~~~s~~~l~k~~~~~~-~~~~~d~Dd~~lk~lL--- 454 (546)
T KOG3783|consen 392 KVERFVKRGP-LNASIL-------LAS-----PYYELAYFWNGFSRMSKNELEKMRAELE-NPKIDDSDDEGLKYLL--- 454 (546)
T ss_pred HHHHHhcccc-cccccc-------ccc-----hHHHHHHHHhhcccCChhhHHHHHHHHh-ccCCCCchHHHHHHHH---
Confidence 3333222221 222210 000 112222222211 1122222 2221 1223 44444444433
Q ss_pred HHHHHHHHHHhHHhhCcCHHHHHHHHHHhhcc---CCC----CHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHhCCCC
Q 005108 478 KLVARARARGNDLFKSERFTEACQAYGEGLRF---DPS----NSVLYCNRAACWFKLGQ-WERSVEDSNQALLIQPNY 547 (714)
Q Consensus 478 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~----~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~ 547 (714)
+|.++...|+-..|..+|...++. ... -|.+++.+|..|..++. ..+|.+++.+|-+...++
T Consensus 455 --------~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY 524 (546)
T KOG3783|consen 455 --------KGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASDY 524 (546)
T ss_pred --------HHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhcccc
Confidence 599999999999999999888742 112 27899999999999999 999999999998876554
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.34 Score=50.46 Aligned_cols=72 Identities=10% Similarity=-0.062 Sum_probs=51.0
Q ss_pred hhhcCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 005108 232 RNRGGICGGDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAV 303 (714)
Q Consensus 232 ~~~~~~~p~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 303 (714)
+...+-+|+|.-.|+.+...|-.++.+++-.+.|++...-.|-.+.+|...-..-....+|......|-+++
T Consensus 32 RerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL 103 (660)
T COG5107 32 RERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCL 103 (660)
T ss_pred HHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHH
Confidence 334456889999999999999999999999999999988777666666544443334444544444444443
|
|
| >PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.00044 Score=59.22 Aligned_cols=83 Identities=19% Similarity=0.352 Sum_probs=53.6
Q ss_pred CCceEEEeec-------CCCccccccchHHHHHHhhCC-CcEEEEEecccCc-------chhh--hCCccccceEEEEeC
Q 005108 628 PGVSVVHFKS-------ASNLHCKQISPYVETLCGRYP-SINFLKVDIDESP-------GVAH--AENVRIVPTFKIYKN 690 (714)
Q Consensus 628 ~~~~vv~f~a-------~~c~~C~~~~p~l~~l~~~~~-~~~~~~vd~d~~~-------~l~~--~~~v~~~Pt~~~~~~ 690 (714)
.+..++.|.+ .||+.|....|.+++.....| +..|+.|.|...+ ..-. .++|.+|||++-+..
T Consensus 19 ~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~p~~~l~~IPTLi~~~~ 98 (119)
T PF06110_consen 19 GKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRTDPDLKLKGIPTLIRWET 98 (119)
T ss_dssp TSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH--CC---SSSEEEECTS
T ss_pred CCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceEcceeeeeecceEEEECC
Confidence 4567777774 499999999999999887765 5888888775411 1122 589999999999988
Q ss_pred CeEEEEEcCCCHHHHHHHHh
Q 005108 691 GSRMKEIVCPSRDMLEHSVR 710 (714)
Q Consensus 691 G~~~~~~~g~~~~~l~~~~~ 710 (714)
|+++....+.+.+.|+.+++
T Consensus 99 ~~rL~e~e~~~~~lv~~~~e 118 (119)
T PF06110_consen 99 GERLVEEECLNEDLVEMFFE 118 (119)
T ss_dssp S-EEEHHHHH-HHHHHHHHH
T ss_pred CCccchhhhccHHHHHHHhc
Confidence 86655554557777766654
|
; PDB: 1V9W_A 1WOU_A. |
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0053 Score=65.07 Aligned_cols=105 Identities=15% Similarity=0.160 Sum_probs=90.3
Q ss_pred HHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHH
Q 005108 444 EMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAAC 523 (714)
Q Consensus 444 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 523 (714)
....|+...|++++..|+...|....+-.. ++++++.+.|...+|-.++.+++.+.-..+..++.+|.+
T Consensus 617 wr~~gn~~~a~~cl~~a~~~~p~~~~v~~v-----------~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~ 685 (886)
T KOG4507|consen 617 WRAVGNSTFAIACLQRALNLAPLQQDVPLV-----------NLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNA 685 (886)
T ss_pred eeecCCcHHHHHHHHHHhccChhhhcccHH-----------HHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchh
Confidence 344799999999999999888866544321 348899999999999999999999998889999999999
Q ss_pred HHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005108 524 WFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNS 559 (714)
Q Consensus 524 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 559 (714)
|..+.+.+.|++.|++|++++|+++.....|-.+.+
T Consensus 686 ~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 686 YLALKNISGALEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHhhhHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 999999999999999999999999987776665554
|
|
| >PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.00044 Score=62.51 Aligned_cols=80 Identities=15% Similarity=0.077 Sum_probs=52.3
Q ss_pred hHHhhhccCCCceEEEeecCCCccccccch------HHHHHHhhCCCcEEEEEecccCcchhhhC--------Cccccce
Q 005108 619 EQFRAAVSLPGVSVVHFKSASNLHCKQISP------YVETLCGRYPSINFLKVDIDESPGVAHAE--------NVRIVPT 684 (714)
Q Consensus 619 e~~~~~i~~~~~~vv~f~a~~c~~C~~~~p------~l~~l~~~~~~~~~~~vd~d~~~~l~~~~--------~v~~~Pt 684 (714)
+.+..+...++++++++...||.-|+.|.. .+.++..+ ++.-++||.|+.|++...| +.-++|+
T Consensus 28 ea~~~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~--~FI~VkvDree~Pdid~~y~~~~~~~~~~gGwPl 105 (163)
T PF03190_consen 28 EALEKAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNR--NFIPVKVDREERPDIDKIYMNAVQAMSGSGGWPL 105 (163)
T ss_dssp HHHHHHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHH--H-EEEEEETTT-HHHHHHHHHHHHHHHS---SSE
T ss_pred HHHHHHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhC--CEEEEEeccccCccHHHHHHHHHHHhcCCCCCCc
Confidence 456666667889999999999999998763 23332222 4667899999999998877 8889998
Q ss_pred EEEE-eCCeEEEEEcCC
Q 005108 685 FKIY-KNGSRMKEIVCP 700 (714)
Q Consensus 685 ~~~~-~~G~~~~~~~g~ 700 (714)
.+|. .+|+++...+.+
T Consensus 106 ~vfltPdg~p~~~~tY~ 122 (163)
T PF03190_consen 106 TVFLTPDGKPFFGGTYF 122 (163)
T ss_dssp EEEE-TTS-EEEEESS-
T ss_pred eEEECCCCCeeeeeeec
Confidence 7777 999999876655
|
; PDB: 3IRA_A. |
| >PRK13190 putative peroxiredoxin; Provisional | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0019 Score=62.15 Aligned_cols=83 Identities=12% Similarity=0.065 Sum_probs=62.0
Q ss_pred ceEEEeecCCCccccccchHHHHHHhhCC--CcEEEEEeccc---------------------------CcchhhhCCcc
Q 005108 630 VSVVHFKSASNLHCKQISPYVETLCGRYP--SINFLKVDIDE---------------------------SPGVAHAENVR 680 (714)
Q Consensus 630 ~~vv~f~a~~c~~C~~~~p~l~~l~~~~~--~~~~~~vd~d~---------------------------~~~l~~~~~v~ 680 (714)
++++.||+.||+.|....+.+.++..++. ++.++-|.+|. ...++++|+|.
T Consensus 30 vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia~~ygv~ 109 (202)
T PRK13190 30 VLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKELAREYNLI 109 (202)
T ss_pred EEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCChHHHHHcCCc
Confidence 44457899999999999999998887774 46666665542 33457789985
Q ss_pred ------ccceEEEE-eCCeEEEEE-----cCCCHHHHHHHHhhh
Q 005108 681 ------IVPTFKIY-KNGSRMKEI-----VCPSRDMLEHSVRHY 712 (714)
Q Consensus 681 ------~~Pt~~~~-~~G~~~~~~-----~g~~~~~l~~~~~~~ 712 (714)
.+|+++|+ ++|+++... +|.+.+++...|+.+
T Consensus 110 ~~~~g~~~p~~fiId~~G~I~~~~~~~~~~gr~~~ellr~l~~l 153 (202)
T PRK13190 110 DENSGATVRGVFIIDPNQIVRWMIYYPAETGRNIDEIIRITKAL 153 (202)
T ss_pred cccCCcEEeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence 58988777 899888765 244888888888764
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.15 Score=49.42 Aligned_cols=231 Identities=12% Similarity=0.075 Sum_probs=127.3
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHH
Q 005108 254 RKGCFGEALSMYDKAISLAPRNA----AFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVRLGQVENA 329 (714)
Q Consensus 254 ~~g~~~~Al~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A 329 (714)
...+.++|+.-|++++++.+... .++-.+..+++++++|++-.+.|.+.+..- .-| .-.+--++.
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYI--------kSA---VTrNySEKs 107 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYI--------KSA---VTRNYSEKS 107 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH--------HHH---HhccccHHH
Confidence 34578889999999998887653 355566777888888888888887765321 100 011111122
Q ss_pred HHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH----HHHHHHHHHcCCHHHH
Q 005108 330 RRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLS----MCRVEALLKLHQLEDA 405 (714)
Q Consensus 330 ~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~----~~la~~~~~~g~~~~A 405 (714)
+...-..+. . ......+ +.-|+..+..++.+- +..+| ..++.+|+..++|.+-
T Consensus 108 IN~IlDyiS---t--S~~m~LL------------Q~FYeTTL~ALkdAK------NeRLWFKTNtKLgkl~fd~~e~~kl 164 (440)
T KOG1464|consen 108 INSILDYIS---T--SKNMDLL------------QEFYETTLDALKDAK------NERLWFKTNTKLGKLYFDRGEYTKL 164 (440)
T ss_pred HHHHHHHHh---h--hhhhHHH------------HHHHHHHHHHHHhhh------cceeeeeccchHhhhheeHHHHHHH
Confidence 211110000 0 0000000 011122222222221 11122 2488999999999888
Q ss_pred HHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHH--HHHHHHhHHHHHHH
Q 005108 406 ESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVE--VAVLLNNVKLVARA 483 (714)
Q Consensus 406 ~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~--~~~~l~~l~~~~~~ 483 (714)
.+.++++.+...........+-...+ ..+|..-.++|-.+.+-.+-..+|++++.+...-+. ..-.+..
T Consensus 165 ~KIlkqLh~SCq~edGedD~kKGtQL--LEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRE------- 235 (440)
T KOG1464|consen 165 QKILKQLHQSCQTEDGEDDQKKGTQL--LEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRE------- 235 (440)
T ss_pred HHHHHHHHHHhccccCchhhhccchh--hhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHH-------
Confidence 88777765443332222222222233 334555677888888888888899999876544332 2222211
Q ss_pred HHHHhHHhhCcCHHHHHHHHHHhhccCCCC-------HHHHHHHHHHHHHhC
Q 005108 484 RARGNDLFKSERFTEACQAYGEGLRFDPSN-------SVLYCNRAACWFKLG 528 (714)
Q Consensus 484 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~g 528 (714)
.-|..+.+.|+|++|-..|-+|.+..... ..-|.-+|..+++.|
T Consensus 236 -CGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~ 286 (440)
T KOG1464|consen 236 -CGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSG 286 (440)
T ss_pred -cCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcC
Confidence 23677889999999999988888764222 233455666666654
|
|
| >KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0017 Score=59.09 Aligned_cols=99 Identities=20% Similarity=0.322 Sum_probs=75.3
Q ss_pred ceeeehhhhHHhhhcc-CCC-ceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCcchhhhCCccccceEEEE
Q 005108 611 EVEEVSSLEQFRAAVS-LPG-VSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAHAENVRIVPTFKIY 688 (714)
Q Consensus 611 ~~~~i~~~e~~~~~i~-~~~-~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~ 688 (714)
.+..|...+-.+++.. ..+ -|||+++...-+.|.-+.-.|+.|..+||.++|+++--..+ ..-|.=..+||++||
T Consensus 92 ~V~~ISg~dyv~EVT~As~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~iKFVki~at~c---IpNYPe~nlPTl~VY 168 (240)
T KOG3170|consen 92 EVFPISGPDYVKEVTKASEGVWVVVHLYKQGVPLCALLSHHLQSLACKFPQIKFVKIPATTC---IPNYPESNLPTLLVY 168 (240)
T ss_pred ceeeccchHHHHHHHhccCccEEEEEeeccccHHHHHHHHHHHHHhhcCCcceEEecccccc---cCCCcccCCCeEEEe
Confidence 6666776665555442 234 46789999999999999999999999999999999765442 223566789999999
Q ss_pred eCCeEEEEEcCC--------CHHHHHHHHhhh
Q 005108 689 KNGSRMKEIVCP--------SRDMLEHSVRHY 712 (714)
Q Consensus 689 ~~G~~~~~~~g~--------~~~~l~~~~~~~ 712 (714)
..|.....++|+ +.+.++.++-+-
T Consensus 169 ~~G~lk~q~igll~lgG~n~t~ed~e~~L~qa 200 (240)
T KOG3170|consen 169 HHGALKKQMIGLLELGGMNLTMEDVEDFLVQA 200 (240)
T ss_pred ecchHHhheehhhhhcCCcCCHHHHHHHHHhc
Confidence 999988877765 567777776554
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0033 Score=45.30 Aligned_cols=49 Identities=20% Similarity=0.184 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhh
Q 005108 549 KALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAESLFHAQVSLKK 597 (714)
Q Consensus 549 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~L~~~~~~l~~ 597 (714)
+.++.+|..+.++|+|++|..+.+.+++++|+|..+......+...+.+
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~~i~k 50 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIEDKIQK 50 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhc
Confidence 3567788888888888888888888888888888877766666555543
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.024 Score=52.40 Aligned_cols=101 Identities=15% Similarity=0.127 Sum_probs=55.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 005108 313 HQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCR 392 (714)
Q Consensus 313 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~l 392 (714)
-..+|..+...+++++|+..++.++.......+..+ ..++++.+....+.+++|+..++.... +.+.......+
T Consensus 92 aL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l----~~lRLArvq~q~~k~D~AL~~L~t~~~--~~w~~~~~elr 165 (207)
T COG2976 92 ALELAKAEVEANNLDKAEAQLKQALAQTKDENLKAL----AALRLARVQLQQKKADAALKTLDTIKE--ESWAAIVAELR 165 (207)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHH----HHHHHHHHHHHhhhHHHHHHHHhcccc--ccHHHHHHHHh
Confidence 344555555555566665555555543332222211 223445555555666666555543322 12223334457
Q ss_pred HHHHHHcCCHHHHHHHhhccccCCCCC
Q 005108 393 VEALLKLHQLEDAESSLSNIPKIEPST 419 (714)
Q Consensus 393 a~~~~~~g~~~~A~~~~~~al~~~p~~ 419 (714)
|.++...|+-++|...|+++++.++..
T Consensus 166 GDill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 166 GDILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred hhHHHHcCchHHHHHHHHHHHHccCCh
Confidence 888888888888888888888776544
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.18 Score=55.07 Aligned_cols=85 Identities=12% Similarity=0.016 Sum_probs=43.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH----------------------hc
Q 005108 250 NELYRKGCFGEALSMYDKAISL--APRNAAFRSNRAAALTGLGRIGEAVKECEEAV----------------------RL 305 (714)
Q Consensus 250 ~~~~~~g~~~~Al~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al----------------------~~ 305 (714)
..+.+.|+|-...++++.--.- |.....++.++|..+..+..+++|.++|.+.- ..
T Consensus 768 elr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~ecly~le~f~~LE~la~~ 847 (1189)
T KOG2041|consen 768 ELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDTENQIECLYRLELFGELEVLART 847 (1189)
T ss_pred HHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHHHHHHhhhhHHHHHHh
Confidence 3445556666555555432110 01113456666666666666666666655431 22
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005108 306 DPNYWRAHQRLGSLLVRLGQVENARRHLC 334 (714)
Q Consensus 306 ~p~~~~a~~~la~~~~~~g~~~~A~~~~~ 334 (714)
-|++...+-.+|..+...|.-++|.+.|-
T Consensus 848 Lpe~s~llp~~a~mf~svGMC~qAV~a~L 876 (1189)
T KOG2041|consen 848 LPEDSELLPVMADMFTSVGMCDQAVEAYL 876 (1189)
T ss_pred cCcccchHHHHHHHHHhhchHHHHHHHHH
Confidence 24555555556666666666666665553
|
|
| >cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0016 Score=56.20 Aligned_cols=89 Identities=13% Similarity=0.161 Sum_probs=66.7
Q ss_pred hhhccCCCceEEEeecC----CCccccccc--hHHHHHHhhCCCcEEEEEeccc--CcchhhhCCccccceEEEE--eCC
Q 005108 622 RAAVSLPGVSVVHFKSA----SNLHCKQIS--PYVETLCGRYPSINFLKVDIDE--SPGVAHAENVRIVPTFKIY--KNG 691 (714)
Q Consensus 622 ~~~i~~~~~~vv~f~a~----~c~~C~~~~--p~l~~l~~~~~~~~~~~vd~d~--~~~l~~~~~v~~~Pt~~~~--~~G 691 (714)
+.+..+.+..+|+++++ ||..|+.+. |.+.++.. .++-++..|++. ..+++..++++++|++.++ +++
T Consensus 11 ~~ak~e~K~llVylhs~~~~~~~~fc~~~l~~~~v~~~ln--~~fv~w~~dv~~~eg~~la~~l~~~~~P~~~~l~~~~~ 88 (116)
T cd02991 11 NDAKQELRFLLVYLHGDDHQDTDEFCRNTLCAPEVIEYIN--TRMLFWACSVAKPEGYRVSQALRERTYPFLAMIMLKDN 88 (116)
T ss_pred HHHHhhCCEEEEEEeCCCCccHHHHHHHHcCCHHHHHHHH--cCEEEEEEecCChHHHHHHHHhCCCCCCEEEEEEecCC
Confidence 33445677899999998 888887654 44444443 256777888875 4468999999999998777 343
Q ss_pred --eEEEEEcCC-CHHHHHHHHhhh
Q 005108 692 --SRMKEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 692 --~~~~~~~g~-~~~~l~~~~~~~ 712 (714)
+.+.++.|. ++++|...|..+
T Consensus 89 ~~~vv~~i~G~~~~~~ll~~L~~~ 112 (116)
T cd02991 89 RMTIVGRLEGLIQPEDLINRLTFI 112 (116)
T ss_pred ceEEEEEEeCCCCHHHHHHHHHHH
Confidence 458899999 999999888764
|
ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis. |
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.19 Score=51.62 Aligned_cols=184 Identities=12% Similarity=-0.056 Sum_probs=130.9
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc----CCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHH
Q 005108 362 RKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKL----HQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTF 437 (714)
Q Consensus 362 ~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~ 437 (714)
...+++..++..+.++-... .......++.+|..- .+..+|..+|+.+.+.. . ....
T Consensus 52 ~~~~~~~~a~~~~~~a~~~~---~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g--~--------------~~a~ 112 (292)
T COG0790 52 AYPPDYAKALKSYEKAAELG---DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADG--L--------------AEAL 112 (292)
T ss_pred cccccHHHHHHHHHHhhhcC---ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcc--c--------------HHHH
Confidence 35567788888887776632 224455567766653 35788999999554432 2 4467
Q ss_pred HHHHHHHHH----hCcHHHHHHHHHHHhccCCCCH-HHHHHHHhHHHHHHHHHHHhHHhhC-----c--CHHHHHHHHHH
Q 005108 438 FVRAQIEMA----LGRFENAVTAAEKAGQIDPRNV-EVAVLLNNVKLVARARARGNDLFKS-----E--RFTEACQAYGE 505 (714)
Q Consensus 438 ~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~-~~~~~l~~l~~~~~~~~~g~~~~~~-----g--~~~~A~~~~~~ 505 (714)
+.+|.+|.. ..+..+|..+|+++.+..-... .....+ +..|..- - +...|+..|.+
T Consensus 113 ~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l------------~~~~~~g~~~~~~~~~~~~A~~~~~~ 180 (292)
T COG0790 113 FNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRL------------GLAYLSGLQALAVAYDDKKALYLYRK 180 (292)
T ss_pred HhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHH------------HHHHHcChhhhcccHHHHhHHHHHHH
Confidence 778888887 5589999999999998755443 222222 4444432 1 33479999999
Q ss_pred hhccCCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc---------------cHHH
Q 005108 506 GLRFDPSNSVLYCNRAACWFK----LGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLE---------------KWAD 566 (714)
Q Consensus 506 al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---------------~~~e 566 (714)
+.... +..+.+.+|.+|.. ..++++|+.+|+++-+... ..+++.++ ++...| +...
T Consensus 181 aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~ 255 (292)
T COG0790 181 AAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQ 255 (292)
T ss_pred HHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHH
Confidence 88775 78899999988866 4489999999999998876 78888888 666555 7788
Q ss_pred HHHHHHHHHHhCCCC
Q 005108 567 AVRDFEVLRRELPDD 581 (714)
Q Consensus 567 A~~~~~~al~~~p~~ 581 (714)
|...+.++....+..
T Consensus 256 a~~~~~~~~~~~~~~ 270 (292)
T COG0790 256 ALEWLQKACELGFDN 270 (292)
T ss_pred HHHHHHHHHHcCChh
Confidence 888888877765443
|
|
| >TIGR02183 GRXA Glutaredoxin, GrxA family | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0014 Score=53.25 Aligned_cols=73 Identities=19% Similarity=0.234 Sum_probs=52.9
Q ss_pred EEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccC----cchhhhCC--ccccceEEEEeCCeEEEEEcCCCHHHH
Q 005108 632 VVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDES----PGVAHAEN--VRIVPTFKIYKNGSRMKEIVCPSRDML 705 (714)
Q Consensus 632 vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~----~~l~~~~~--v~~~Pt~~~~~~G~~~~~~~g~~~~~l 705 (714)
|+.|..+||+.|.+....|+++..+++++.+..+|++.. .++....+ ++.+|+++ .+|+.+ .|. ++|
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~if--i~g~~i---gG~--~dl 74 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAEGISKADLEKTVGKPVETVPQIF--VDEKHV---GGC--TDF 74 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEE--ECCEEe---cCH--HHH
Confidence 567888999999999999999988777888888888753 24555566 48999985 477643 233 445
Q ss_pred HHHHhh
Q 005108 706 EHSVRH 711 (714)
Q Consensus 706 ~~~~~~ 711 (714)
.+++++
T Consensus 75 ~~~~~~ 80 (86)
T TIGR02183 75 EQLVKE 80 (86)
T ss_pred HHHHHh
Confidence 555544
|
This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase. |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.078 Score=53.93 Aligned_cols=99 Identities=14% Similarity=0.016 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHh----CCCC----------HHHHHHHHHHHHHCCCHH---HHHHHHHHHH
Q 005108 242 AEELKRMGNELYRKG-CFGEALSMYDKAISL----APRN----------AAFRSNRAAALTGLGRIG---EAVKECEEAV 303 (714)
Q Consensus 242 ~~~~~~~g~~~~~~g-~~~~Al~~~~~al~~----~p~~----------~~~~~~la~~~~~~g~~~---~A~~~~~~al 303 (714)
+..+++.|..++..+ ++++|+..++++.+. .... ..++..++.+|...+.++ +|....+.+-
T Consensus 35 a~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~ 114 (278)
T PF08631_consen 35 ARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLE 114 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence 577899999999999 999999999999987 2211 456778899999888764 4555666666
Q ss_pred hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCCC
Q 005108 304 RLDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQA 340 (714)
Q Consensus 304 ~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~ 340 (714)
...|+.+..+...-.++.+.++.+++.+.+.+++...
T Consensus 115 ~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~ 151 (278)
T PF08631_consen 115 SEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV 151 (278)
T ss_pred HhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc
Confidence 6678777777666677777888899988888887643
|
It is also involved in sporulation []. |
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0013 Score=42.80 Aligned_cols=30 Identities=30% Similarity=0.512 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Q 005108 516 LYCNRAACWFKLGQWERSVEDSNQALLIQP 545 (714)
Q Consensus 516 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p 545 (714)
+|+.+|.+|.++|++++|+++|+++++++|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 344444444444444444444444444444
|
... |
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0028 Score=66.33 Aligned_cols=105 Identities=25% Similarity=0.325 Sum_probs=90.9
Q ss_pred HHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005108 483 ARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKL---GQWERSVEDSNQALLIQPNYTKALLRRAASNS 559 (714)
Q Consensus 483 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 559 (714)
.+..|+-.+....+..|+..|.+++...|....+|.+++.++++. |+.-.|+..+..+++++|....+++.|+.++.
T Consensus 377 ~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~ 456 (758)
T KOG1310|consen 377 FKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALN 456 (758)
T ss_pred HHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHH
Confidence 344466667777889999999999999999999999999999885 46678889999999999999999999999999
Q ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHH
Q 005108 560 KLEKWADAVRDFEVLRRELPDDNEIAES 587 (714)
Q Consensus 560 ~~g~~~eA~~~~~~al~~~p~~~~~~~~ 587 (714)
.++++.+|+++...+....|.+......
T Consensus 457 el~r~~eal~~~~alq~~~Ptd~a~~~~ 484 (758)
T KOG1310|consen 457 ELTRYLEALSCHWALQMSFPTDVARQNF 484 (758)
T ss_pred HHhhHHHhhhhHHHHhhcCchhhhhhhh
Confidence 9999999999999988888866554433
|
|
| >TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0026 Score=71.58 Aligned_cols=75 Identities=11% Similarity=0.188 Sum_probs=65.9
Q ss_pred eEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCcchhhhCCccccceEEEEeCCeEEEEEcCC-CHHHHHHHH
Q 005108 631 SVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKEIVCP-SRDMLEHSV 709 (714)
Q Consensus 631 ~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~~~~g~-~~~~l~~~~ 709 (714)
.+-.|..++|+.|......++++....|++..-.+|+.+.++++++|+|+++|+++| ||+.+ +.|. +.+++..+|
T Consensus 479 ~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~v~~vP~~~i--~~~~~--~~G~~~~~~~~~~~ 554 (555)
T TIGR03143 479 NIKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDVSHFPDLKDEYGIMSVPAIVV--DDQQV--YFGKKTIEEMLELI 554 (555)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEECcccHHHHHhCCceecCEEEE--CCEEE--EeeCCCHHHHHHhh
Confidence 455668999999999999999999999999999999999999999999999999876 77755 3476 999888876
|
This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140). |
| >cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0028 Score=57.14 Aligned_cols=75 Identities=20% Similarity=0.116 Sum_probs=58.2
Q ss_pred CCCceEEEee-cCCCccccccchHHHHHHhhC--CCcEEEEEeccc----------------------CcchhhhCCccc
Q 005108 627 LPGVSVVHFK-SASNLHCKQISPYVETLCGRY--PSINFLKVDIDE----------------------SPGVAHAENVRI 681 (714)
Q Consensus 627 ~~~~~vv~f~-a~~c~~C~~~~p~l~~l~~~~--~~~~~~~vd~d~----------------------~~~l~~~~~v~~ 681 (714)
..+++++.|| +.||+.|....|.+.++..++ .++.|+.|.++. ...++..|++..
T Consensus 21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~g~~~ 100 (140)
T cd02971 21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDSPFSHKAWAEKEGGLNFPLLSDPDGEFAKAYGVLI 100 (140)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcccCCCceEEECCChHHHHHcCCcc
Confidence 3568899999 689999999999999998886 457777776553 334577888887
Q ss_pred cc---------eEEEE-eCCeEEEEEcCCC
Q 005108 682 VP---------TFKIY-KNGSRMKEIVCPS 701 (714)
Q Consensus 682 ~P---------t~~~~-~~G~~~~~~~g~~ 701 (714)
.| +++++ ++|+++....|..
T Consensus 101 ~~~~~~~~~~p~~~lid~~g~i~~~~~~~~ 130 (140)
T cd02971 101 EKSAGGGLAARATFIIDPDGKIRYVEVEPL 130 (140)
T ss_pred ccccccCceeEEEEEECCCCcEEEEEecCC
Confidence 76 56666 7899999998883
|
PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a |
| >PRK15000 peroxidase; Provisional | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0046 Score=59.29 Aligned_cols=85 Identities=13% Similarity=0.160 Sum_probs=64.8
Q ss_pred CCceEEEeec-CCCccccccchHHHHHHhhCC--CcEEEEEeccc----------------------------Ccchhhh
Q 005108 628 PGVSVVHFKS-ASNLHCKQISPYVETLCGRYP--SINFLKVDIDE----------------------------SPGVAHA 676 (714)
Q Consensus 628 ~~~~vv~f~a-~~c~~C~~~~p~l~~l~~~~~--~~~~~~vd~d~----------------------------~~~l~~~ 676 (714)
.+.+++.||+ .||+.|....+.|.++..++. ++.++-|.+|. ..++++.
T Consensus 34 gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia~~ 113 (200)
T PRK15000 34 GKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREIQKA 113 (200)
T ss_pred CCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcHHHHH
Confidence 4588999999 599999999999999988874 46776666552 2245678
Q ss_pred CCcc------ccceEEEE-eCCeEEEEEcCC-----CHHHHHHHHhhh
Q 005108 677 ENVR------IVPTFKIY-KNGSRMKEIVCP-----SRDMLEHSVRHY 712 (714)
Q Consensus 677 ~~v~------~~Pt~~~~-~~G~~~~~~~g~-----~~~~l~~~~~~~ 712 (714)
|+|. .+|..+|+ ++|+++...++. +.+++.+.|+.+
T Consensus 114 ygv~~~~~g~~~r~tfiID~~G~I~~~~~~~~~~gr~~~eilr~l~al 161 (200)
T PRK15000 114 YGIEHPDEGVALRGSFLIDANGIVRHQVVNDLPLGRNIDEMLRMVDAL 161 (200)
T ss_pred cCCccCCCCcEEeEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 8988 68987777 799999877763 677777777543
|
|
| >PRK10877 protein disulfide isomerase II DsbC; Provisional | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0017 Score=63.67 Aligned_cols=81 Identities=11% Similarity=0.129 Sum_probs=59.8
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhCCCcEE------------------------------------------EEE
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRYPSINF------------------------------------------LKV 665 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~------------------------------------------~~v 665 (714)
....++.|..+.|+.|+++++.+.++...--.+.+ ...
T Consensus 107 ~k~~I~vFtDp~CpyCkkl~~~l~~~~~~~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~~~~c~~ 186 (232)
T PRK10877 107 EKHVITVFTDITCGYCHKLHEQMKDYNALGITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVSPASCDV 186 (232)
T ss_pred CCEEEEEEECCCChHHHHHHHHHHHHhcCCeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCCcccccc
Confidence 45678889999999999999888887542101111 122
Q ss_pred ecccCcchhhhCCccccceEEEEeCCeEEEEEcCC-CHHHHHHHHhhh
Q 005108 666 DIDESPGVAHAENVRIVPTFKIYKNGSRMKEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 666 d~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~~~~g~-~~~~l~~~~~~~ 712 (714)
+++++.++++++||+++|+++ +.||+.+ .|. +.++|+++|+..
T Consensus 187 ~v~~~~~la~~lgi~gTPtiv-~~~G~~~---~G~~~~~~L~~~l~~~ 230 (232)
T PRK10877 187 DIADHYALGVQFGVQGTPAIV-LSNGTLV---PGYQGPKEMKAFLDEH 230 (232)
T ss_pred hHHHhHHHHHHcCCccccEEE-EcCCeEe---eCCCCHHHHHHHHHHc
Confidence 233466678999999999998 7899866 688 999999998864
|
|
| >KOG3425 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0029 Score=52.70 Aligned_cols=80 Identities=19% Similarity=0.360 Sum_probs=55.0
Q ss_pred CCCceEEEeec--------CCCccccccchHHHHHHhhCC-CcEEEEEecccCc-------chhhhCCc-cccceEEEEe
Q 005108 627 LPGVSVVHFKS--------ASNLHCKQISPYVETLCGRYP-SINFLKVDIDESP-------GVAHAENV-RIVPTFKIYK 689 (714)
Q Consensus 627 ~~~~~vv~f~a--------~~c~~C~~~~p~l~~l~~~~~-~~~~~~vd~d~~~-------~l~~~~~v-~~~Pt~~~~~ 689 (714)
+...+++.|.+ +|||.|....|.+.+.....| ++.|+.|++-+-+ ..-...++ ..|||++=++
T Consensus 24 n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~FR~d~~~lt~vPTLlrw~ 103 (128)
T KOG3425|consen 24 NGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANPFRKDPGILTAVPTLLRWK 103 (128)
T ss_pred CCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCccccCCCceeecceeeEEc
Confidence 34456777775 499999999999988877665 5999999987622 22334455 8999999997
Q ss_pred -CCeEEEEEcCCCHHHHH
Q 005108 690 -NGSRMKEIVCPSRDMLE 706 (714)
Q Consensus 690 -~G~~~~~~~g~~~~~l~ 706 (714)
.+++.....+.....++
T Consensus 104 ~~~~rL~~~q~~~~~Lve 121 (128)
T KOG3425|consen 104 RQPQRLDGLQCLNDHLVE 121 (128)
T ss_pred CccccchHhHhhHHHHHH
Confidence 45555444444333333
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0017 Score=42.20 Aligned_cols=32 Identities=22% Similarity=0.262 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Q 005108 549 KALLRRAASNSKLEKWADAVRDFEVLRRELPD 580 (714)
Q Consensus 549 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~ 580 (714)
++|+.+|.+|..+|++++|+++|+++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 57899999999999999999999999999985
|
... |
| >cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.002 Score=58.18 Aligned_cols=41 Identities=10% Similarity=0.144 Sum_probs=34.9
Q ss_pred CCceEEEeecCCCcc-ccccchHHHHHHhhCC-----CcEEEEEecc
Q 005108 628 PGVSVVHFKSASNLH-CKQISPYVETLCGRYP-----SINFLKVDID 668 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~-C~~~~p~l~~l~~~~~-----~~~~~~vd~d 668 (714)
.+++++.||+.||+. |....+.+.++..++. ++.++.|..|
T Consensus 22 gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d 68 (142)
T cd02968 22 GKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVD 68 (142)
T ss_pred CCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEEC
Confidence 468999999999998 9999999999998884 2888888764
|
Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti |
| >PRK13599 putative peroxiredoxin; Provisional | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0044 Score=60.05 Aligned_cols=83 Identities=8% Similarity=0.087 Sum_probs=63.2
Q ss_pred ceEEEeecCCCccccccchHHHHHHhhCC--CcEEEEEeccc---------------------------CcchhhhCCcc
Q 005108 630 VSVVHFKSASNLHCKQISPYVETLCGRYP--SINFLKVDIDE---------------------------SPGVAHAENVR 680 (714)
Q Consensus 630 ~~vv~f~a~~c~~C~~~~p~l~~l~~~~~--~~~~~~vd~d~---------------------------~~~l~~~~~v~ 680 (714)
++++.||+.||+.|....+.+.++..++. ++.++-|.+|. ..+++..||+.
T Consensus 31 vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil~D~~~~va~~yg~~ 110 (215)
T PRK13599 31 FVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVIADDLGKVSNQLGMI 110 (215)
T ss_pred EEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEEECCCchHHHHcCCC
Confidence 45689999999999999999999988873 57776666553 23467788884
Q ss_pred -------ccceEEEE-eCCeEEEEEc-----CCCHHHHHHHHhhh
Q 005108 681 -------IVPTFKIY-KNGSRMKEIV-----CPSRDMLEHSVRHY 712 (714)
Q Consensus 681 -------~~Pt~~~~-~~G~~~~~~~-----g~~~~~l~~~~~~~ 712 (714)
.+|+++|+ ++|+++..+. |.+.+++.+.|+.+
T Consensus 111 ~~~~~~~~~R~tfIID~dG~Ir~~~~~p~~~gr~~~eilr~l~~l 155 (215)
T PRK13599 111 HPGKGTNTVRAVFIVDDKGTIRLIMYYPQEVGRNVDEILRALKAL 155 (215)
T ss_pred ccCCCCceeeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHHHHh
Confidence 67988777 8999987764 33678888777654
|
|
| >PRK10329 glutaredoxin-like protein; Provisional | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0033 Score=50.38 Aligned_cols=70 Identities=16% Similarity=0.290 Sum_probs=53.5
Q ss_pred EEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCcchh---hhCCccccceEEEEeCCeEEEEEcCCCHHHHHHH
Q 005108 632 VVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVA---HAENVRIVPTFKIYKNGSRMKEIVCPSRDMLEHS 708 (714)
Q Consensus 632 vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~l~---~~~~v~~~Pt~~~~~~G~~~~~~~g~~~~~l~~~ 708 (714)
+..|..+||+.|.+....|++ .++.|-.+|+++.++.+ ...+...+|++++ +| ..+.|++.+.|.+.
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~-----~gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~i--~~---~~~~Gf~~~~l~~~ 72 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMES-----RGFDFEMINVDRVPEAAETLRAQGFRQLPVVIA--GD---LSWSGFRPDMINRL 72 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHH-----CCCceEEEECCCCHHHHHHHHHcCCCCcCEEEE--CC---EEEecCCHHHHHHH
Confidence 567888999999999888855 36788889998877633 3458889999865 44 34669999999887
Q ss_pred Hhh
Q 005108 709 VRH 711 (714)
Q Consensus 709 ~~~ 711 (714)
+..
T Consensus 73 ~~~ 75 (81)
T PRK10329 73 HPA 75 (81)
T ss_pred HHh
Confidence 654
|
|
| >KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0022 Score=58.89 Aligned_cols=102 Identities=24% Similarity=0.389 Sum_probs=79.6
Q ss_pred ceeeehhhhHHhhhccCC---CceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCcchhhhCCccccceEEE
Q 005108 611 EVEEVSSLEQFRAAVSLP---GVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAHAENVRIVPTFKI 687 (714)
Q Consensus 611 ~~~~i~~~e~~~~~i~~~---~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~ 687 (714)
.+.++.+..+|...|... -..+|+.|.+--.-|..+.-.+.-|+++||-++|+++--.. -....+|....+||+.|
T Consensus 139 ~V~El~~gkqfld~idke~ks~~i~VhIYEdgi~gcealn~~~~cLAAeyP~vKFckikss~-~gas~~F~~n~lP~Lli 217 (273)
T KOG3171|consen 139 FVYELETGKQFLDTIDKELKSTTIVVHIYEDGIKGCEALNSSLTCLAAEYPIVKFCKIKSSN-TGASDRFSLNVLPTLLI 217 (273)
T ss_pred eEEEeccchhHHHHHhcccceEEEEEEEecCCCchHHHHhhhHHHhhccCCceeEEEeeecc-ccchhhhcccCCceEEE
Confidence 566777888888877543 25678999999999999999999999999999999987643 33567899999999999
Q ss_pred EeCCeEEEEEcCC--------CHHHHHHHHhhhc
Q 005108 688 YKNGSRMKEIVCP--------SRDMLEHSVRHYS 713 (714)
Q Consensus 688 ~~~G~~~~~~~g~--------~~~~l~~~~~~~~ 713 (714)
|++|+.+.-++.. -.-.|+.+|+.|+
T Consensus 218 YkgGeLIgNFv~va~qlgedffa~dle~FL~e~g 251 (273)
T KOG3171|consen 218 YKGGELIGNFVSVAEQLGEDFFAGDLESFLNEYG 251 (273)
T ss_pred eeCCchhHHHHHHHHHHhhhhhhhhHHHHHHHcC
Confidence 9999987655432 2245666666654
|
|
| >PRK10382 alkyl hydroperoxide reductase subunit C; Provisional | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.006 Score=57.60 Aligned_cols=84 Identities=12% Similarity=0.044 Sum_probs=62.5
Q ss_pred CceEEEee-cCCCccccccchHHHHHHhhCC--CcEEEEEeccc-------------------------CcchhhhCCcc
Q 005108 629 GVSVVHFK-SASNLHCKQISPYVETLCGRYP--SINFLKVDIDE-------------------------SPGVAHAENVR 680 (714)
Q Consensus 629 ~~~vv~f~-a~~c~~C~~~~p~l~~l~~~~~--~~~~~~vd~d~-------------------------~~~l~~~~~v~ 680 (714)
+.+++.|| +.||+.|....+.+.++..++. ++.++-|.+|. ...++++|+|.
T Consensus 32 k~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~~ygv~ 111 (187)
T PRK10382 32 RWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFDNM 111 (187)
T ss_pred CeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchHHHHHcCCC
Confidence 47888888 9999999999999999888873 46666665543 34568899983
Q ss_pred ----cc--ceEEEE-eCCeEEEEEc-----CCCHHHHHHHHhhh
Q 005108 681 ----IV--PTFKIY-KNGSRMKEIV-----CPSRDMLEHSVRHY 712 (714)
Q Consensus 681 ----~~--Pt~~~~-~~G~~~~~~~-----g~~~~~l~~~~~~~ 712 (714)
++ |+.+|+ ++|+++...+ |.+.+++.+.|+.+
T Consensus 112 ~~~~g~~~r~tfIID~~G~I~~~~~~~~~~~~~~~eil~~l~al 155 (187)
T PRK10382 112 REDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAA 155 (187)
T ss_pred cccCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHhh
Confidence 56 877666 8999887654 33777777777543
|
|
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.069 Score=55.48 Aligned_cols=124 Identities=13% Similarity=0.011 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH---cCCHHHHHHHHH
Q 005108 258 FGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVR---LGQVENARRHLC 334 (714)
Q Consensus 258 ~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~---~g~~~~A~~~~~ 334 (714)
.+.-+.+|++|++.+|++...+..+-.+..+..+.++..+.+++++..+|++...|..+-..... .-.+.+....|.
T Consensus 47 ~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~ 126 (321)
T PF08424_consen 47 AERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYE 126 (321)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence 46778999999999999999999999999999999999999999999999998888766555443 234667777777
Q ss_pred hhcCCC-----------ChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcC
Q 005108 335 LSGQQA-----------DPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAG 381 (714)
Q Consensus 335 ~al~~~-----------~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~ 381 (714)
+++... ..........+..++..+....+.|..+.|+..++..++.+
T Consensus 127 ~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 127 KCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 765410 11112234455556666666777777777777777777664
|
|
| >TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0016 Score=50.92 Aligned_cols=66 Identities=23% Similarity=0.339 Sum_probs=49.7
Q ss_pred EEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCcchhhhC---CccccceEEEEeCCeEEEEEcCCCHHHHHH
Q 005108 633 VHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAHAE---NVRIVPTFKIYKNGSRMKEIVCPSRDMLEH 707 (714)
Q Consensus 633 v~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~l~~~~---~v~~~Pt~~~~~~G~~~~~~~g~~~~~l~~ 707 (714)
..|..++|+.|++....|++. ++.|-.+|+++.++....+ |...+|++++ +|. ..+.|++++.|.+
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~~~-----~i~~~~~di~~~~~~~~~~~~~g~~~vP~v~~--~g~--~~~~G~~~~~~~~ 70 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALEEH-----GIAFEEINIDEQPEAIDYVKAQGFRQVPVIVA--DGD--LSWSGFRPDKLKA 70 (72)
T ss_pred EEEeCCCCHHHHHHHHHHHHC-----CCceEEEECCCCHHHHHHHHHcCCcccCEEEE--CCC--cEEeccCHHHHHh
Confidence 457789999999999988752 5778888888877655544 8889999755 454 2567888888865
|
NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase. |
| >KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.013 Score=57.35 Aligned_cols=73 Identities=18% Similarity=0.211 Sum_probs=67.0
Q ss_pred HHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005108 486 RGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASN 558 (714)
Q Consensus 486 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 558 (714)
.+.-..+.|+.++|..+|+.|+++.|.+++++..+|......++.-+|-.+|-+|+.++|.+.+++.+.+...
T Consensus 122 ~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT~ 194 (472)
T KOG3824|consen 122 AAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRARTT 194 (472)
T ss_pred HHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhccc
Confidence 3556788999999999999999999999999999999999999999999999999999999999998877543
|
|
| >PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.045 Score=45.95 Aligned_cols=92 Identities=14% Similarity=0.320 Sum_probs=70.2
Q ss_pred HHhHHhhCcCHHHHHHHHHHhhccC---CC---------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHH-------hCCC
Q 005108 486 RGNDLFKSERFTEACQAYGEGLRFD---PS---------NSVLYCNRAACWFKLGQWERSVEDSNQALL-------IQPN 546 (714)
Q Consensus 486 ~g~~~~~~g~~~~A~~~~~~al~~~---p~---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~-------~~p~ 546 (714)
.|.-.+..|.|++|...|.++++.. |. +...+-.|+.++..+|+|++++...+++|. ++.+
T Consensus 15 ~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qd 94 (144)
T PF12968_consen 15 DAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQD 94 (144)
T ss_dssp HHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTST
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccc
Confidence 3666677899999999999998853 21 246677789999999999999988888875 4555
Q ss_pred CH----HHHHHHHHHHHHhccHHHHHHHHHHHHHh
Q 005108 547 YT----KALLRRAASNSKLEKWADAVRDFEVLRRE 577 (714)
Q Consensus 547 ~~----~~~~~la~~~~~~g~~~eA~~~~~~al~~ 577 (714)
.. .+.+..+..+..+|+.++|+..|+.+-+.
T Consensus 95 eGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 95 EGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 43 45578899999999999999999988654
|
The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D. |
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.11 Score=54.63 Aligned_cols=104 Identities=16% Similarity=0.073 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCC-CHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCC
Q 005108 434 AYTFFVRAQIEMALGRFENAVTAAEKAGQIDPR-NVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPS 512 (714)
Q Consensus 434 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~ 512 (714)
..+.+.....+.+.|-+..|+++.+-.+.++|. ++-....+ +-....+.++|+--++.++........
T Consensus 103 flal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~-----------ID~~ALrs~~y~~Li~~~~~~~~~~~~ 171 (360)
T PF04910_consen 103 FLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLF-----------IDYYALRSRQYQWLIDFSESPLAKCYR 171 (360)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHH-----------HHHHHHhcCCHHHHHHHHHhHhhhhhh
Confidence 335566677777888888888888888888887 55433322 234456667777777777765542111
Q ss_pred -----CHHHHHHHHHHHHHhCCH---------------HHHHHHHHHHHHhCCCCH
Q 005108 513 -----NSVLYCNRAACWFKLGQW---------------ERSVEDSNQALLIQPNYT 548 (714)
Q Consensus 513 -----~~~~~~~la~~~~~~g~~---------------~~A~~~~~~al~~~p~~~ 548 (714)
-+..-+.++.++..+++- ++|.+.+++|+...|.-.
T Consensus 172 ~~~~~lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~vl 227 (360)
T PF04910_consen 172 NWLSLLPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWVL 227 (360)
T ss_pred hhhhhCccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHHHH
Confidence 235667778888888887 888888988888776533
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.015 Score=58.08 Aligned_cols=76 Identities=17% Similarity=0.118 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 005108 515 VLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAESLFH 590 (714)
Q Consensus 515 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~L~~ 590 (714)
..+.++-.+|.+.++++.|+.+.+.++.+.|+++.-+..+|.+|.++|.+..|...++..++..|+++.+.....+
T Consensus 182 Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~q 257 (269)
T PRK10941 182 KLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQ 257 (269)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHH
Confidence 4566778888999999999999999999999999888889999999999999999999999999998876554433
|
|
| >KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.15 Score=51.14 Aligned_cols=180 Identities=12% Similarity=0.058 Sum_probs=119.8
Q ss_pred HHHHHHHHHcCCHHHHHHHhhcccc----CCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccC-
Q 005108 390 MCRVEALLKLHQLEDAESSLSNIPK----IEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQID- 464 (714)
Q Consensus 390 ~~la~~~~~~g~~~~A~~~~~~al~----~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~- 464 (714)
..++.+|.+.++|.+|+.....++. ++... ....++..-...|+.+.+..+|...+..|....
T Consensus 132 arli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~------------lLvev~llESK~y~~l~Nl~KakasLTsART~An 199 (411)
T KOG1463|consen 132 ARLIRLYNDTKRYTEALALINDLLRELKKLDDKI------------LLVEVHLLESKAYHALRNLPKAKASLTSARTTAN 199 (411)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHhccccc------------ceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhc
Confidence 3478899999999999988766553 33332 234456666788888888888888877664321
Q ss_pred ----CCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCC---CCH---HHHHHHHHHHHHhCCHHHHH
Q 005108 465 ----PRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDP---SNS---VLYCNRAACWFKLGQWERSV 534 (714)
Q Consensus 465 ----p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p---~~~---~~~~~la~~~~~~g~~~~A~ 534 (714)
|-...+-.-+ .-|..+....+|.-|..+|-++++-.. ++. ..+-.+-.|-..++..++--
T Consensus 200 aiYcpPqlQa~lDL----------qSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~ 269 (411)
T KOG1463|consen 200 AIYCPPQLQATLDL----------QSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVA 269 (411)
T ss_pred ccccCHHHHHHHHH----------hccceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 2111121112 237777778999999999999988421 122 33344555666777777654
Q ss_pred HHH--HHHHHhCCCCHHHHHHHHHHHHH--hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005108 535 EDS--NQALLIQPNYTKALLRRAASNSK--LEKWADAVRDFEVLRRELPDDNEIAESLFHAQVS 594 (714)
Q Consensus 535 ~~~--~~al~~~p~~~~~~~~la~~~~~--~g~~~eA~~~~~~al~~~p~~~~~~~~L~~~~~~ 594 (714)
..+ +.+++....+.++....+.++.+ +.+|+.|+..|+.-+..+ +-++..+...+..
T Consensus 270 ~lls~K~~l~y~g~~i~AmkavAeA~~nRSLkdF~~AL~~yk~eL~~D---~ivr~Hl~~Lyd~ 330 (411)
T KOG1463|consen 270 ALLSAKLALKYAGRDIDAMKAVAEAFGNRSLKDFEKALADYKKELAED---PIVRSHLQSLYDN 330 (411)
T ss_pred HHHhhHHHHhccCcchHHHHHHHHHhcCCcHHHHHHHHHHhHHHHhcC---hHHHHHHHHHHHH
Confidence 444 56677777788999999998854 578999999998877655 4555555554443
|
|
| >cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.0052 Score=56.27 Aligned_cols=38 Identities=24% Similarity=0.376 Sum_probs=30.8
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhCCCcEEEEE
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKV 665 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~v 665 (714)
..+.++.|+..+|+.|+.+.|.+.++..+++++.++..
T Consensus 5 a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~~~~~~~~ 42 (154)
T cd03023 5 GDVTIVEFFDYNCGYCKKLAPELEKLLKEDPDVRVVFK 42 (154)
T ss_pred CCEEEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEE
Confidence 34788999999999999999999998877776555443
|
It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown. |
| >PRK13189 peroxiredoxin; Provisional | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.0068 Score=59.14 Aligned_cols=83 Identities=11% Similarity=0.093 Sum_probs=61.8
Q ss_pred ceEEEeecCCCccccccchHHHHHHhhCC--CcEEEEEeccc---------------------------CcchhhhCCcc
Q 005108 630 VSVVHFKSASNLHCKQISPYVETLCGRYP--SINFLKVDIDE---------------------------SPGVAHAENVR 680 (714)
Q Consensus 630 ~~vv~f~a~~c~~C~~~~p~l~~l~~~~~--~~~~~~vd~d~---------------------------~~~l~~~~~v~ 680 (714)
++++.||+.||+.|....+.+.++..++. ++.++-|.+|. ..+++++|||.
T Consensus 38 vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~~~~h~aw~~~~~~~~g~~i~fPllsD~~~~ia~~ygv~ 117 (222)
T PRK13189 38 FVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQVFSHIKWVEWIKEKLGVEIEFPIIADDRGEIAKKLGMI 117 (222)
T ss_pred EEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHhHHHhcCcCcceeEEEcCccHHHHHhCCC
Confidence 55678899999999999999999888873 56676665553 23457788886
Q ss_pred -------ccceEEEE-eCCeEEEEEc-----CCCHHHHHHHHhhh
Q 005108 681 -------IVPTFKIY-KNGSRMKEIV-----CPSRDMLEHSVRHY 712 (714)
Q Consensus 681 -------~~Pt~~~~-~~G~~~~~~~-----g~~~~~l~~~~~~~ 712 (714)
.+|+++|+ ++|.++...+ |.+.+++...|+.+
T Consensus 118 ~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~al 162 (222)
T PRK13189 118 SPGKGTNTVRAVFIIDPKGIIRAILYYPQEVGRNMDEILRLVKAL 162 (222)
T ss_pred ccccCCCceeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 46776666 8999887664 44778888877654
|
|
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.026 Score=48.61 Aligned_cols=85 Identities=14% Similarity=0.149 Sum_probs=69.6
Q ss_pred CHHHHHHHHHHHHHhC---CHHHHHHHHHHHHH-hCCCC-HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHH
Q 005108 513 NSVLYCNRAACWFKLG---QWERSVEDSNQALL-IQPNY-TKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAES 587 (714)
Q Consensus 513 ~~~~~~~la~~~~~~g---~~~~A~~~~~~al~-~~p~~-~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~ 587 (714)
.....+++|+++.... +..+.+.+++..++ -.|+. -+..+.|+..++++++|++++.+.+.+++..|++.++...
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~L 110 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALEL 110 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 4577889999998755 46778899999986 44443 3677889999999999999999999999999999999887
Q ss_pred HHHHHHHhhh
Q 005108 588 LFHAQVSLKK 597 (714)
Q Consensus 588 L~~~~~~l~~ 597 (714)
-..++..+.+
T Consensus 111 k~~ied~itk 120 (149)
T KOG3364|consen 111 KETIEDKITK 120 (149)
T ss_pred HHHHHHHHhh
Confidence 7666666554
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.18 Score=52.42 Aligned_cols=247 Identities=13% Similarity=0.089 Sum_probs=151.0
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCCCChH
Q 005108 264 MYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPT 343 (714)
Q Consensus 264 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 343 (714)
.|++++...+-.++.|+.....+...++-+.|+...++++...|. ....++.+|....+-+.-..+|+++.+
T Consensus 290 ~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps---L~~~lse~yel~nd~e~v~~~fdk~~q----- 361 (660)
T COG5107 290 IHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS---LTMFLSEYYELVNDEEAVYGCFDKCTQ----- 361 (660)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc---hheeHHHHHhhcccHHHHhhhHHHHHH-----
Confidence 466777777777888888888888888888888888888777665 556677777666666666566655431
Q ss_pred HHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCch
Q 005108 344 EVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSS 423 (714)
Q Consensus 344 ~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 423 (714)
.+...+. .++-+.+-. . .|+++...+.+-+-.. ..
T Consensus 362 ------~L~r~ys-------~~~s~~~s~---------~----------------D~N~e~~~Ell~kr~~---k~---- 396 (660)
T COG5107 362 ------DLKRKYS-------MGESESASK---------V----------------DNNFEYSKELLLKRIN---KL---- 396 (660)
T ss_pred ------HHHHHHh-------hhhhhhhcc---------c----------------cCCccccHHHHHHHHh---hh----
Confidence 0000000 000000000 0 1112111111111000 11
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHH
Q 005108 424 QTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAY 503 (714)
Q Consensus 424 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~ 503 (714)
..+|......-.+..-.+.|..+|-++-+..-...+++..- .-.-+...|++.-|...|
T Consensus 397 ----------t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~-----------A~~E~~~~~d~~ta~~if 455 (660)
T COG5107 397 ----------TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYC-----------AFIEYYATGDRATAYNIF 455 (660)
T ss_pred ----------hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeH-----------HHHHHHhcCCcchHHHHH
Confidence 33555555555566667777888877765442222222211 012356678888888888
Q ss_pred HHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Q 005108 504 GEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNY--TKALLRRAASNSKLEKWADAVRDFEVLRRELPDD 581 (714)
Q Consensus 504 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~ 581 (714)
+-.+...|+++...+..-..+...++-+.|...|+++++.-.+. ...|-.+...-.+-|+...++..=++..++.|..
T Consensus 456 elGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 456 ELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred HHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 88888888888777777777888888888888888777632222 3556666666677889988888888888888875
Q ss_pred HHH
Q 005108 582 NEI 584 (714)
Q Consensus 582 ~~~ 584 (714)
..+
T Consensus 536 n~~ 538 (660)
T COG5107 536 NLI 538 (660)
T ss_pred hHH
Confidence 433
|
|
| >cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.0067 Score=58.48 Aligned_cols=83 Identities=10% Similarity=0.044 Sum_probs=62.0
Q ss_pred ceEEEeecCCCccccccchHHHHHHhhCC--CcEEEEEeccc---------------------------CcchhhhCCcc
Q 005108 630 VSVVHFKSASNLHCKQISPYVETLCGRYP--SINFLKVDIDE---------------------------SPGVAHAENVR 680 (714)
Q Consensus 630 ~~vv~f~a~~c~~C~~~~p~l~~l~~~~~--~~~~~~vd~d~---------------------------~~~l~~~~~v~ 680 (714)
++++.||+.||+.|....+.+.++..++. ++.++-|.+|. ...++.+|++.
T Consensus 28 vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~~~~~~~~~~~i~~~~~~~~~fpil~D~~~~ia~~yg~~ 107 (203)
T cd03016 28 GILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDSVESHIKWIEDIEEYTGVEIPFPIIADPDREVAKLLGMI 107 (203)
T ss_pred EEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceeEEECchHHHHHHcCCc
Confidence 55678999999999999999999988874 57777776653 23457789986
Q ss_pred ----ccc----eEEEE-eCCeEEEEEcC-----CCHHHHHHHHhhh
Q 005108 681 ----IVP----TFKIY-KNGSRMKEIVC-----PSRDMLEHSVRHY 712 (714)
Q Consensus 681 ----~~P----t~~~~-~~G~~~~~~~g-----~~~~~l~~~~~~~ 712 (714)
+.| +++|+ ++|+++..+++ .+.+++...|+.+
T Consensus 108 ~~~~~~~~~~r~~fiID~~G~I~~~~~~~~~~gr~~~ell~~l~~l 153 (203)
T cd03016 108 DPDAGSTLTVRAVFIIDPDKKIRLILYYPATTGRNFDEILRVVDAL 153 (203)
T ss_pred cccCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHH
Confidence 334 34555 89999887765 3677888777654
|
They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an |
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.0039 Score=40.00 Aligned_cols=31 Identities=35% Similarity=0.514 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Q 005108 550 ALLRRAASNSKLEKWADAVRDFEVLRRELPD 580 (714)
Q Consensus 550 ~~~~la~~~~~~g~~~eA~~~~~~al~~~p~ 580 (714)
+++.+|.++.++|++++|++.|+++++..|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 4556666666666666666666666666654
|
|
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.48 Score=48.58 Aligned_cols=189 Identities=16% Similarity=0.049 Sum_probs=114.3
Q ss_pred HHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcC
Q 005108 286 LTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVG 365 (714)
Q Consensus 286 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g 365 (714)
....+++..|...+.++-.. .+..+...++.+|..-.- ...
T Consensus 51 ~~~~~~~~~a~~~~~~a~~~--~~~~a~~~l~~~y~~g~g-------------------------------------v~~ 91 (292)
T COG0790 51 SAYPPDYAKALKSYEKAAEL--GDAAALALLGQMYGAGKG-------------------------------------VSR 91 (292)
T ss_pred ccccccHHHHHHHHHHhhhc--CChHHHHHHHHHHHhccC-------------------------------------ccc
Confidence 34556777777777777652 223455555555544331 122
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHH
Q 005108 366 DWKSALREGDAAIAAGADFSPQLSMCRVEALLK----LHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRA 441 (714)
Q Consensus 366 ~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la 441 (714)
+..+|+.+|..+...+ .+...+.+|.+|.. ..++.+|..+|+++.+..-... ....+.++
T Consensus 92 ~~~~A~~~~~~~a~~g---~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a-------------~~~~~~l~ 155 (292)
T COG0790 92 DKTKAADWYRCAAADG---LAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEA-------------ALAMYRLG 155 (292)
T ss_pred cHHHHHHHHHHHhhcc---cHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhH-------------HHHHHHHH
Confidence 3445555555433332 23334446666665 4477777777777776654430 12345555
Q ss_pred HHHHHhC-------cHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhh----CcCHHHHHHHHHHhhccC
Q 005108 442 QIEMALG-------RFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFK----SERFTEACQAYGEGLRFD 510 (714)
Q Consensus 442 ~~~~~~g-------~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~----~g~~~~A~~~~~~al~~~ 510 (714)
..|..-. +...|+..|.++-... +......+ |.+|.. ..++++|..+|.++.+..
T Consensus 156 ~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~l------------g~~y~~G~Gv~~d~~~A~~wy~~Aa~~g 221 (292)
T COG0790 156 LAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLL------------GRMYEKGLGVPRDLKKAFRWYKKAAEQG 221 (292)
T ss_pred HHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHH------------HHHHHcCCCCCcCHHHHHHHHHHHHHCC
Confidence 5555431 2347888888887665 44444444 666644 458999999999999987
Q ss_pred CCCHHHHHHHHHHHHHhC---------------CHHHHHHHHHHHHHhCCC
Q 005108 511 PSNSVLYCNRAACWFKLG---------------QWERSVEDSNQALLIQPN 546 (714)
Q Consensus 511 p~~~~~~~~la~~~~~~g---------------~~~~A~~~~~~al~~~p~ 546 (714)
. ....+.++ ++...| +...|..++.++....+.
T Consensus 222 ~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 269 (292)
T COG0790 222 D--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFD 269 (292)
T ss_pred C--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCCh
Confidence 5 88888888 776666 667777777776665444
|
|
| >PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.0034 Score=47.07 Aligned_cols=56 Identities=27% Similarity=0.482 Sum_probs=42.9
Q ss_pred EEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCcchhh----hCCccccceEEEEeCCeEE
Q 005108 632 VVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAH----AENVRIVPTFKIYKNGSRM 694 (714)
Q Consensus 632 vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~l~~----~~~v~~~Pt~~~~~~G~~~ 694 (714)
++.|+.++|+.|......|++ .++.|-.+|++..++..+ ..++..+|++++ +|+.+
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~-----~~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i--~g~~I 60 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDE-----KGIPYEEVDVDEDEEAREELKELSGVRTVPQVFI--DGKFI 60 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHH-----TTBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEE--TTEEE
T ss_pred cEEEEcCCCcCHHHHHHHHHH-----cCCeeeEcccccchhHHHHHHHHcCCCccCEEEE--CCEEC
Confidence 467889999999999888844 347788888888765433 349999999886 77653
|
Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A .... |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.051 Score=58.55 Aligned_cols=52 Identities=15% Similarity=0.118 Sum_probs=30.2
Q ss_pred HhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 005108 487 GNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQAL 541 (714)
Q Consensus 487 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 541 (714)
...+...++|.+|...-++.-++- +.+|+-.|.-+.+..++++|.+.|.+|=
T Consensus 780 VqlHve~~~W~eAFalAe~hPe~~---~dVy~pyaqwLAE~DrFeEAqkAfhkAG 831 (1081)
T KOG1538|consen 780 VQLHVETQRWDEAFALAEKHPEFK---DDVYMPYAQWLAENDRFEEAQKAFHKAG 831 (1081)
T ss_pred hhheeecccchHhHhhhhhCcccc---ccccchHHHHhhhhhhHHHHHHHHHHhc
Confidence 455556666666665554433322 3455666666666667777766666553
|
|
| >COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.34 Score=47.42 Aligned_cols=298 Identities=12% Similarity=0.065 Sum_probs=156.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 005108 246 KRMGNELYRKGCFGEALSMYDKAISLAP--------RNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLG 317 (714)
Q Consensus 246 ~~~g~~~~~~g~~~~Al~~~~~al~~~p--------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la 317 (714)
..+|+...+.+++++|+..|.+.+...- ........++.+|...|++..-.+..... .++|....
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~s-------re~m~~ft 79 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSS-------REAMEDFT 79 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhh-------HHHHHHhc
Confidence 5677888888999999999998886521 12456677888888888776543333221 12222111
Q ss_pred HHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 005108 318 SLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALL 397 (714)
Q Consensus 318 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~ 397 (714)
. -+..+-++.+-.............+..+..... -|.+.-++.++ ..+-..++.+++
T Consensus 80 k-----~k~~KiirtLiekf~~~~dsl~dqi~v~~~~ie------------wA~rEkr~fLr------~~Le~Kli~l~y 136 (421)
T COG5159 80 K-----PKITKIIRTLIEKFPYSSDSLEDQIKVLTALIE------------WADREKRKFLR------LELECKLIYLLY 136 (421)
T ss_pred c-----hhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHH------------HHHHHHHHHHH------HHHHHHHHHHHH
Confidence 1 111111121111111111111111111111110 01111111111 122334788899
Q ss_pred HcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhcc-----CCCCHHHHH
Q 005108 398 KLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQI-----DPRNVEVAV 472 (714)
Q Consensus 398 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~ 472 (714)
+.|+|.+|+.....++..-.. +.+.+....++..-..+|....+..++...+..|... -|....+..
T Consensus 137 ~~~~YsdalalIn~ll~ElKk--------~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~l 208 (421)
T COG5159 137 KTGKYSDALALINPLLHELKK--------YDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQL 208 (421)
T ss_pred hcccHHHHHHHHHHHHHHHHh--------hcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHH
Confidence 999999999887765532111 1111223556677778888888888877777655432 222222222
Q ss_pred HHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccC---CCCHHHHHHH---HHHHHHhCCHHHHHHHH--HHHHH-h
Q 005108 473 LLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFD---PSNSVLYCNR---AACWFKLGQWERSVEDS--NQALL-I 543 (714)
Q Consensus 473 ~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~l---a~~~~~~g~~~~A~~~~--~~al~-~ 543 (714)
-+ .-|...+...+|.-|..+|-++++-. ..+..+...+ -..-..++..++-...+ +..++ .
T Consensus 209 DL----------~sGIlhcdd~dyktA~SYF~Ea~Egft~l~~d~kAc~sLkYmlLSkIMlN~~~evk~vl~~K~t~~~y 278 (421)
T COG5159 209 DL----------LSGILHCDDRDYKTASSYFIEALEGFTLLKMDVKACVSLKYMLLSKIMLNRREEVKAVLRNKNTLKHY 278 (421)
T ss_pred HH----------hccceeeccccchhHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhHHHHHHHHccchhHhhh
Confidence 22 12667778889999999999988743 2233332222 22223344444433333 23344 4
Q ss_pred CCCCHHHHHHHHHHH--HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005108 544 QPNYTKALLRRAASN--SKLEKWADAVRDFEVLRRELPDDNEIAESLFHAQVS 594 (714)
Q Consensus 544 ~p~~~~~~~~la~~~--~~~g~~~eA~~~~~~al~~~p~~~~~~~~L~~~~~~ 594 (714)
+....++....+.+| ..+.+|.+|+..|+.-+..+ +-++..+...+..
T Consensus 279 ~~r~I~am~avaea~~NRsL~df~~aL~qY~~el~~D---~~iRsHl~~LYD~ 328 (421)
T COG5159 279 DDRMIRAMLAVAEAFGNRSLKDFSDALAQYSDELHQD---SFIRSHLQYLYDV 328 (421)
T ss_pred hhhhHHHHHHHHHHhCCCcHhhHHHHHHHhhHHhccC---HHHHHHHHHHHHH
Confidence 455667777778777 34568899999888766544 4555555554443
|
|
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.091 Score=54.61 Aligned_cols=147 Identities=13% Similarity=-0.005 Sum_probs=108.8
Q ss_pred HHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCc------------HHHHHHHHHHHhccCCCCHHHHHHH
Q 005108 407 SSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGR------------FENAVTAAEKAGQIDPRNVEVAVLL 474 (714)
Q Consensus 407 ~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~------------~~~A~~~~~~al~~~p~~~~~~~~l 474 (714)
..|++.++.+|.+ ...|..+.......-. .+.-+.+|++|++.+|++...+..+
T Consensus 6 ~el~~~v~~~P~d--------------i~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~ 71 (321)
T PF08424_consen 6 AELNRRVRENPHD--------------IEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGY 71 (321)
T ss_pred HHHHHHHHhCccc--------------HHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 3466777788888 6677777665554422 5677889999999999998888766
Q ss_pred HhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHH---hCCHHHHHHHHHHHHHhC----C--
Q 005108 475 NNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFK---LGQWERSVEDSNQALLIQ----P-- 545 (714)
Q Consensus 475 ~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~----p-- 545 (714)
-....+..+-++..+.+++++..+|++..+|..+-..... .-.+.+....|.++++.- .
T Consensus 72 ------------l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~ 139 (321)
T PF08424_consen 72 ------------LEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGR 139 (321)
T ss_pred ------------HHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccc
Confidence 3344566677888899999999999999888776544333 235778888888877631 0
Q ss_pred ------------CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Q 005108 546 ------------NYTKALLRRAASNSKLEKWADAVRDFEVLRRELP 579 (714)
Q Consensus 546 ------------~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p 579 (714)
....++.++.....+.|-.+.|+..++..++++=
T Consensus 140 ~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 140 MTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred cccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 1125567777778899999999999999999874
|
|
| >cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.0025 Score=61.20 Aligned_cols=75 Identities=12% Similarity=0.152 Sum_probs=54.5
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhCCCcEE---------------------------------------------
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRYPSINF--------------------------------------------- 662 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~--------------------------------------------- 662 (714)
....++.|..+.|+.|+++++.+.+.. .++.+
T Consensus 77 ~~~~i~~f~D~~Cp~C~~~~~~l~~~~---~~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~~~~~ 153 (197)
T cd03020 77 GKRVVYVFTDPDCPYCRKLEKELKPNA---DGVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPPPAAS 153 (197)
T ss_pred CCEEEEEEECCCCccHHHHHHHHhhcc---CceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCCCccc
Confidence 457888999999999999999887611 12221
Q ss_pred EEEecccCcchhhhCCccccceEEEEeCCeEEEEEcCC-CHHHHHHHH
Q 005108 663 LKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKEIVCP-SRDMLEHSV 709 (714)
Q Consensus 663 ~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~~~~g~-~~~~l~~~~ 709 (714)
...+++++.++++.+||+++|+++ ++||+. +.|. +.++|+++|
T Consensus 154 ~~~~i~~~~~l~~~~gi~gtPtii-~~~G~~---~~G~~~~~~l~~~L 197 (197)
T cd03020 154 CDNPVAANLALGRQLGVNGTPTIV-LADGRV---VPGAPPAAQLEALL 197 (197)
T ss_pred cCchHHHHHHHHHHcCCCcccEEE-ECCCeE---ecCCCCHHHHHhhC
Confidence 122333355678899999999997 889986 4688 888887654
|
They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer. |
| >PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.005 Score=51.48 Aligned_cols=80 Identities=18% Similarity=0.274 Sum_probs=57.8
Q ss_pred HHhhhccCCCceEEEeecCCCcccc---ccchHHHHHHhhCCC-cEEEEEecccCcchhhhCCccccceEEEEeCCeEEE
Q 005108 620 QFRAAVSLPGVSVVHFKSASNLHCK---QISPYVETLCGRYPS-INFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMK 695 (714)
Q Consensus 620 ~~~~~i~~~~~~vv~f~a~~c~~C~---~~~p~l~~l~~~~~~-~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~ 695 (714)
.+...+...+..++.| +..+..+. .+.-++-+|...+++ +...-++.+...+|+..|+|..+|+++++++|+.+.
T Consensus 18 ~ld~~l~~~~~~vlf~-~gDp~r~~E~~DvaVILPEL~~af~~~~~~avv~~~~e~~L~~r~gv~~~PaLvf~R~g~~lG 96 (107)
T PF07449_consen 18 TLDAFLAAPGDAVLFF-AGDPARFPETADVAVILPELVKAFPGRFRGAVVARAAERALAARFGVRRWPALVFFRDGRYLG 96 (107)
T ss_dssp CHHHHHHCCSCEEEEE-SS-TTTSTTCCHHHHHHHHHHCTSTTSEEEEEEEHHHHHHHHHHHT-TSSSEEEEEETTEEEE
T ss_pred hHHHHHhCCCcEEEEE-CCCCCcCcccccceeEcHHHHHhhhCccceEEECchhHHHHHHHhCCccCCeEEEEECCEEEE
Confidence 3444455555655544 44444444 444477888888887 556677777888999999999999999999999999
Q ss_pred EEcCC
Q 005108 696 EIVCP 700 (714)
Q Consensus 696 ~~~g~ 700 (714)
.+.|.
T Consensus 97 ~i~gi 101 (107)
T PF07449_consen 97 AIEGI 101 (107)
T ss_dssp EEESS
T ss_pred EecCe
Confidence 98876
|
This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G. |
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=96.52 E-value=1.4 Score=46.41 Aligned_cols=105 Identities=15% Similarity=0.156 Sum_probs=67.4
Q ss_pred CcCHHHHHHHHHHhhccCCCCHHHHHHHHH---HHHHhC----C---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Q 005108 493 SERFTEACQAYGEGLRFDPSNSVLYCNRAA---CWFKLG----Q---WERSVEDSNQALLIQPNYTKALLRRAASNSKLE 562 (714)
Q Consensus 493 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~---~~~~~g----~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 562 (714)
.|+.++|+..+-..-.+.|+-..+....-. ++.+.. . --+-+.+.++.+-.+.++..++...+.-.+.+.
T Consensus 711 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 790 (831)
T PRK15180 711 EGRLDEALSVLISLKRIEPDVSRLMREYKQIIRLFNESRKDGGSTITSYEHLDYAKKLLVFDSENAYALKYAALNAMHLR 790 (831)
T ss_pred cccHHHHHHHHHhhhccCccHHHHHHHHHHHHHHhhhhcccCCcccchhhhHhhhhhheeeccchHHHHHHHHhhHhHHH
Confidence 578889998888777788876544433222 222111 0 113344555566667777777766666778889
Q ss_pred cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhh
Q 005108 563 KWADAVRDFEVLRRELPDDNEIAESLFHAQVSLKK 597 (714)
Q Consensus 563 ~~~eA~~~~~~al~~~p~~~~~~~~L~~~~~~l~~ 597 (714)
+|.+|++++++.-+.+.-...+...+..+...+.+
T Consensus 791 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 825 (831)
T PRK15180 791 DYTQALQYWQRLEKVNGPTEPVTRQISTCITALQK 825 (831)
T ss_pred HHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHhh
Confidence 99999999999988875444455555555555544
|
|
| >PRK10606 btuE putative glutathione peroxidase; Provisional | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.007 Score=56.82 Aligned_cols=39 Identities=10% Similarity=-0.003 Sum_probs=32.9
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhCC--CcEEEEEec
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRYP--SINFLKVDI 667 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~--~~~~~~vd~ 667 (714)
.++++|.|||.||+.|.+ .|.|+++.++|. ++.++-+.+
T Consensus 25 GKvvLVvf~AS~C~~~~q-~~~L~~L~~~y~~~gl~Vlg~p~ 65 (183)
T PRK10606 25 GNVLLIVNVASKCGLTPQ-YEQLENIQKAWADQGFVVLGFPC 65 (183)
T ss_pred CCEEEEEEEeCCCCCcHH-HHHHHHHHHHHhhCCeEEEEeec
Confidence 468999999999999974 889999999985 477777765
|
|
| >PRK15317 alkyl hydroperoxide reductase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.01 Score=66.24 Aligned_cols=79 Identities=16% Similarity=0.179 Sum_probs=68.1
Q ss_pred CceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCcchhhhCCccccceEEEEeCCeEEEEEcCC-CHHHHHH
Q 005108 629 GVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKEIVCP-SRDMLEH 707 (714)
Q Consensus 629 ~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~~~~g~-~~~~l~~ 707 (714)
.+.+..|..+.|+.|......++++....|++.+-.+|..+.++++..|+|.++|++++ ||+.+ +.|. +.+++.+
T Consensus 117 ~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~i~~~~id~~~~~~~~~~~~v~~VP~~~i--~~~~~--~~g~~~~~~~~~ 192 (517)
T PRK15317 117 DFHFETYVSLSCHNCPDVVQALNLMAVLNPNITHTMIDGALFQDEVEARNIMAVPTVFL--NGEEF--GQGRMTLEEILA 192 (517)
T ss_pred CeEEEEEEcCCCCCcHHHHHHHHHHHHhCCCceEEEEEchhCHhHHHhcCCcccCEEEE--CCcEE--EecCCCHHHHHH
Confidence 35578899999999999999999999999999999999999999999999999999965 77644 4476 8888877
Q ss_pred HHhh
Q 005108 708 SVRH 711 (714)
Q Consensus 708 ~~~~ 711 (714)
.+..
T Consensus 193 ~~~~ 196 (517)
T PRK15317 193 KLDT 196 (517)
T ss_pred HHhc
Confidence 7653
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.014 Score=42.05 Aligned_cols=44 Identities=20% Similarity=0.249 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005108 515 VLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASN 558 (714)
Q Consensus 515 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 558 (714)
+.++.+|..++++|+|++|..+++.+++++|++.++......+-
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~ 45 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIE 45 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Confidence 46788999999999999999999999999999987775554443
|
|
| >PRK13191 putative peroxiredoxin; Provisional | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.013 Score=56.83 Aligned_cols=83 Identities=11% Similarity=0.102 Sum_probs=61.7
Q ss_pred ceEEEeecCCCccccccchHHHHHHhhCC--CcEEEEEeccc---------------------------CcchhhhCCcc
Q 005108 630 VSVVHFKSASNLHCKQISPYVETLCGRYP--SINFLKVDIDE---------------------------SPGVAHAENVR 680 (714)
Q Consensus 630 ~~vv~f~a~~c~~C~~~~p~l~~l~~~~~--~~~~~~vd~d~---------------------------~~~l~~~~~v~ 680 (714)
++++.||+.||+.|....+.|.++..++. ++.++-|.+|. ..+++..|||.
T Consensus 36 vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds~~~h~aw~~~~~~~~~~~i~fPllsD~~~~ia~~ygv~ 115 (215)
T PRK13191 36 FVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSNISHIEWVMWIEKNLKVEVPFPIIADPMGNVAKRLGMI 115 (215)
T ss_pred EEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceEEEECCchHHHHHcCCc
Confidence 45568899999999999999999988883 57777776663 22456788874
Q ss_pred -------ccceEEEE-eCCeEEEEEcC-----CCHHHHHHHHhhh
Q 005108 681 -------IVPTFKIY-KNGSRMKEIVC-----PSRDMLEHSVRHY 712 (714)
Q Consensus 681 -------~~Pt~~~~-~~G~~~~~~~g-----~~~~~l~~~~~~~ 712 (714)
.+|+.+|+ ++|+++..+++ .+.+++...|+.+
T Consensus 116 ~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~al 160 (215)
T PRK13191 116 HAESSTATVRAVFIVDDKGTVRLILYYPMEIGRNIDEILRAIRAL 160 (215)
T ss_pred ccccCCceeEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 36776666 89999887643 3778887777654
|
|
| >PRK13184 pknD serine/threonine-protein kinase; Reviewed | Back alignment and domain information |
|---|
Probab=96.45 E-value=1.9 Score=50.87 Aligned_cols=92 Identities=14% Similarity=0.099 Sum_probs=74.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHC----C---CHHHHHHHHHHHHhcCCCcHHHHHH
Q 005108 246 KRMGNELYRKGCFGEALSMYDKAISLAPRN---AAFRSNRAAALTGL----G---RIGEAVKECEEAVRLDPNYWRAHQR 315 (714)
Q Consensus 246 ~~~g~~~~~~g~~~~Al~~~~~al~~~p~~---~~~~~~la~~~~~~----g---~~~~A~~~~~~al~~~p~~~~a~~~ 315 (714)
...-++++..+.|+.|+..|+++-...|.. .++.+..|..+..+ | .+++|+..|++... .|.-+--|..
T Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 557 (932)
T PRK13184 479 LAVPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHG-GVGAPLEYLG 557 (932)
T ss_pred ccCcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcC-CCCCchHHHh
Confidence 345567788899999999999999998865 56777777776654 2 57888888887543 4566777899
Q ss_pred HHHHHHHcCCHHHHHHHHHhhcC
Q 005108 316 LGSLLVRLGQVENARRHLCLSGQ 338 (714)
Q Consensus 316 la~~~~~~g~~~~A~~~~~~al~ 338 (714)
.|.+|.++|++++-++.|..+++
T Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~ 580 (932)
T PRK13184 558 KALVYQRLGEYNEEIKSLLLALK 580 (932)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHH
Confidence 99999999999999999999987
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.0059 Score=39.12 Aligned_cols=33 Identities=21% Similarity=0.461 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC
Q 005108 515 VLYCNRAACWFKLGQWERSVEDSNQALLIQPNY 547 (714)
Q Consensus 515 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 547 (714)
++++.+|.++.+.|++++|++.|+++++..|++
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 367889999999999999999999999888863
|
|
| >COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.11 Score=55.96 Aligned_cols=142 Identities=20% Similarity=0.023 Sum_probs=112.3
Q ss_pred CcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHh
Q 005108 448 GRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKL 527 (714)
Q Consensus 448 g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 527 (714)
+...-++..+..-+.+++.+++...... +...+...+....+...+..++..+|++..++.+++......
T Consensus 45 ~~~~~~~~a~~~~~~~~~~~~~llla~~----------lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~ 114 (620)
T COG3914 45 GLQALAIYALLLGIAINDVNPELLLAAF----------LSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELD 114 (620)
T ss_pred CchhHHHHHHHccCccCCCCHHHHHHHH----------HHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHh
Confidence 3444466667777778888888754331 355677788888899999999999999999999999998888
Q ss_pred CCHHHHHHHHHH-HHHhCCCCHHHHHHH------HHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhc
Q 005108 528 GQWERSVEDSNQ-ALLIQPNYTKALLRR------AASNSKLEKWADAVRDFEVLRRELPDDNEIAESLFHAQVSLKKSR 599 (714)
Q Consensus 528 g~~~~A~~~~~~-al~~~p~~~~~~~~l------a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~L~~~~~~l~~~~ 599 (714)
|....++..+.. +....|++......+ +..+..+|+..++....++++++.|.++++...+........++.
T Consensus 115 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~r~~~cs~~ 193 (620)
T COG3914 115 GLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTARQEQCSWP 193 (620)
T ss_pred hhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHHHHHhccch
Confidence 887777766665 888899988776655 888888999999999999999999999988888877755555444
|
|
| >KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.40 E-value=2.4 Score=47.87 Aligned_cols=147 Identities=8% Similarity=-0.099 Sum_probs=105.2
Q ss_pred hcCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---CCCHHHHHHHHHHHHhcCCCcH
Q 005108 234 RGGICGGDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTG---LGRIGEAVKECEEAVRLDPNYW 310 (714)
Q Consensus 234 ~~~~~p~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~p~~~ 310 (714)
...+++.+...+..+...+.+.|++++-...-.++.++.|..+..|.....-... .+...++...|++++.. -+.+
T Consensus 105 e~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~d-y~~v 183 (881)
T KOG0128|consen 105 ELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEELFEKALGD-YNSV 183 (881)
T ss_pred HhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhcc-cccc
Confidence 3447778888899999999999999998888888888999999888877554433 36778888899998863 3334
Q ss_pred HHHHHHHHHH-------HHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcC
Q 005108 311 RAHQRLGSLL-------VRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAG 381 (714)
Q Consensus 311 ~a~~~la~~~-------~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~ 381 (714)
..|...+..+ ...++++.-...|.+++..............+.+......|...-..++-+.++...+...
T Consensus 184 ~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~~~ 261 (881)
T KOG0128|consen 184 PIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIALFVRELKQP 261 (881)
T ss_pred hHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcc
Confidence 4444444433 4456788888899998875444444555555666666666666666677777777777664
|
|
| >KOG4814 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.37 E-value=1.4 Score=48.07 Aligned_cols=94 Identities=19% Similarity=0.203 Sum_probs=82.7
Q ss_pred HHHhHHhhCcCHHHHHHHHHHhhccCCCC------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005108 485 ARGNDLFKSERFTEACQAYGEGLRFDPSN------SVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASN 558 (714)
Q Consensus 485 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 558 (714)
+.|.-.++..+|..++++|...++..|.| .....+++.||..+.+.++|.+++++|-+.+|.++-..+..-.+.
T Consensus 359 n~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~ 438 (872)
T KOG4814|consen 359 NTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSF 438 (872)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 44778899999999999999999887765 567788999999999999999999999999999998888888888
Q ss_pred HHhccHHHHHHHHHHHHHhC
Q 005108 559 SKLEKWADAVRDFEVLRREL 578 (714)
Q Consensus 559 ~~~g~~~eA~~~~~~al~~~ 578 (714)
...+.-++|+....+.....
T Consensus 439 ~~E~~Se~AL~~~~~~~s~~ 458 (872)
T KOG4814|consen 439 LAEDKSEEALTCLQKIKSSE 458 (872)
T ss_pred HHhcchHHHHHHHHHHHhhh
Confidence 89999999999888776543
|
|
| >PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.013 Score=50.15 Aligned_cols=90 Identities=18% Similarity=0.261 Sum_probs=64.9
Q ss_pred HHhhhc--cCCCceEEEeecCCCccccccchHHHHHHhhCCC-cEEEEEecccCcchhhhCCccccc-eEEEEeCCeEEE
Q 005108 620 QFRAAV--SLPGVSVVHFKSASNLHCKQISPYVETLCGRYPS-INFLKVDIDESPGVAHAENVRIVP-TFKIYKNGSRMK 695 (714)
Q Consensus 620 ~~~~~i--~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~-~~~~~vd~d~~~~l~~~~~v~~~P-t~~~~~~G~~~~ 695 (714)
..+++| +...++++.|...|.+.|-++...|.+++++..+ ..++.||+++.++.-+.|.+. .| |+.+|-+++.+.
T Consensus 10 ~VDqAI~~e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~a~IY~vDi~~Vpdfn~~yel~-dP~tvmFF~rnkhm~ 88 (133)
T PF02966_consen 10 HVDQAILSEEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNFAVIYLVDIDEVPDFNQMYELY-DPCTVMFFFRNKHMM 88 (133)
T ss_dssp HHHHHHHH-SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTTHCCHHHTTS--SSEEEEEEETTEEEE
T ss_pred hHHHHHhccCceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcceEEEEEEcccchhhhcccccC-CCeEEEEEecCeEEE
Confidence 344444 3467899999999999999999999999999988 557789999999999999998 88 455554555443
Q ss_pred ---------EEcCC--CHHHHHHHHh
Q 005108 696 ---------EIVCP--SRDMLEHSVR 710 (714)
Q Consensus 696 ---------~~~g~--~~~~l~~~~~ 710 (714)
++.+. +++++.+.|+
T Consensus 89 vD~GtgnnnKin~~~~~kqe~iDiie 114 (133)
T PF02966_consen 89 VDFGTGNNNKINWAFEDKQEFIDIIE 114 (133)
T ss_dssp EESSSSSSSSBCS--SCHHHHHHHHH
T ss_pred EEecCCCccEEEEEcCcHHHHHHHHH
Confidence 23333 5566666554
|
Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A. |
| >cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.0047 Score=49.71 Aligned_cols=58 Identities=21% Similarity=0.294 Sum_probs=43.8
Q ss_pred EEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCc-----chhhhCCccccceEEEEeCCeEE
Q 005108 632 VVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESP-----GVAHAENVRIVPTFKIYKNGSRM 694 (714)
Q Consensus 632 vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~-----~l~~~~~v~~~Pt~~~~~~G~~~ 694 (714)
++.|..+||+.|..+...++++.. .+.++.+|.++.. .+.+..++..+|++ |.+|+.+
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v--~~~g~~i 64 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGV---KPAVVELDQHEDGSEIQDYLQELTGQRTVPNV--FIGGKFI 64 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCC---CcEEEEEeCCCChHHHHHHHHHHhCCCCCCeE--EECCEEE
Confidence 567889999999999999998876 3567777776542 34556688899986 6678753
|
GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes |
| >TIGR02190 GlrX-dom Glutaredoxin-family domain | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.0058 Score=48.81 Aligned_cols=58 Identities=17% Similarity=0.304 Sum_probs=43.0
Q ss_pred ceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccC---cchhhhCCccccceEEEEeCCeEE
Q 005108 630 VSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDES---PGVAHAENVRIVPTFKIYKNGSRM 694 (714)
Q Consensus 630 ~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~---~~l~~~~~v~~~Pt~~~~~~G~~~ 694 (714)
..|+.|..+||+.|.+....|++. ++.|-.+|+++. .++....+...+|.+++ ||+.+
T Consensus 8 ~~V~ly~~~~Cp~C~~ak~~L~~~-----gi~y~~idi~~~~~~~~~~~~~g~~~vP~i~i--~g~~i 68 (79)
T TIGR02190 8 ESVVVFTKPGCPFCAKAKATLKEK-----GYDFEEIPLGNDARGRSLRAVTGATTVPQVFI--GGKLI 68 (79)
T ss_pred CCEEEEECCCCHhHHHHHHHHHHc-----CCCcEEEECCCChHHHHHHHHHCCCCcCeEEE--CCEEE
Confidence 446788999999999999988753 466667777664 34445568899999854 78754
|
This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain. |
| >PTZ00137 2-Cys peroxiredoxin; Provisional | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.023 Score=56.43 Aligned_cols=84 Identities=14% Similarity=0.065 Sum_probs=61.1
Q ss_pred CceEEEee-cCCCccccccchHHHHHHhhCC--CcEEEEEeccc----------------------------CcchhhhC
Q 005108 629 GVSVVHFK-SASNLHCKQISPYVETLCGRYP--SINFLKVDIDE----------------------------SPGVAHAE 677 (714)
Q Consensus 629 ~~~vv~f~-a~~c~~C~~~~p~l~~l~~~~~--~~~~~~vd~d~----------------------------~~~l~~~~ 677 (714)
+.+++.|| +.||+.|....+.+.++..++. ++.++-|.+|. ..+++++|
T Consensus 99 k~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~iakay 178 (261)
T PTZ00137 99 SYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDISREVSKSF 178 (261)
T ss_pred CeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEcCChHHHHHc
Confidence 35555555 8999999999999988888773 46666555543 23468899
Q ss_pred Ccc-----ccceEEEE-eCCeEEEEEc-----CCCHHHHHHHHhhh
Q 005108 678 NVR-----IVPTFKIY-KNGSRMKEIV-----CPSRDMLEHSVRHY 712 (714)
Q Consensus 678 ~v~-----~~Pt~~~~-~~G~~~~~~~-----g~~~~~l~~~~~~~ 712 (714)
||. .+|+.+|+ ++|+++...+ |.+.+++.+.|+.+
T Consensus 179 Gv~~~~g~a~R~tFIID~dG~I~~~~~~~~~~gr~v~eiLr~l~al 224 (261)
T PTZ00137 179 GLLRDEGFSHRASVLVDKAGVVKHVAVYDLGLGRSVDETLRLFDAV 224 (261)
T ss_pred CCCCcCCceecEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence 986 58887777 7999988663 33888888777643
|
|
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.045 Score=44.73 Aligned_cols=73 Identities=26% Similarity=0.299 Sum_probs=55.3
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHHHcCCHHHHHHHH
Q 005108 261 ALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNY--WRAHQRLGSLLVRLGQVENARRHL 333 (714)
Q Consensus 261 Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~a~~~la~~~~~~g~~~~A~~~~ 333 (714)
.+..+++.++.+|++..+.+.+|..+...|++++|++.+-.+++.++++ ..+...+-.++..+|.-+.-...|
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~ 81 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEY 81 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHH
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHH
Confidence 4667888999999999999999999999999999999999999998776 667777777777777644333333
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.0078 Score=39.66 Aligned_cols=24 Identities=25% Similarity=0.368 Sum_probs=11.4
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHH
Q 005108 517 YCNRAACWFKLGQWERSVEDSNQA 540 (714)
Q Consensus 517 ~~~la~~~~~~g~~~~A~~~~~~a 540 (714)
|.++|.+|.++|+|++|+++|+++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344455555555555555555553
|
|
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.092 Score=55.25 Aligned_cols=177 Identities=14% Similarity=-0.028 Sum_probs=107.7
Q ss_pred HHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCCCChHHHHHH
Q 005108 269 ISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRL 348 (714)
Q Consensus 269 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l 348 (714)
+..+|....++..++.++..+|+++.|.+.+++|+-.-.......+..-..-...|. ...+......-
T Consensus 33 l~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~------------~rL~~~~~eNR 100 (360)
T PF04910_consen 33 LQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGN------------CRLDYRRPENR 100 (360)
T ss_pred HHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCc------------cccCCccccch
Confidence 455777778888888888888888888887777753211100000000000000000 01111111122
Q ss_pred HHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhh
Q 005108 349 QVVEKHLSKCTDARKVGDWKSALREGDAAIAAGAD-FSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRF 427 (714)
Q Consensus 349 ~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 427 (714)
......+.....+.+.|-+..|+++.+-.+.++|. +...+...+-....+.++++--++.++........+ +
T Consensus 101 ~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~-------~ 173 (360)
T PF04910_consen 101 QFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRN-------W 173 (360)
T ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhh-------h
Confidence 23344555566688999999999999999999998 444555555566677888888888887655421111 0
Q ss_pred hhhhhhHHHHHHHHHHHHHhCcH---------------HHHHHHHHHHhccCCC
Q 005108 428 FGMLSEAYTFFVRAQIEMALGRF---------------ENAVTAAEKAGQIDPR 466 (714)
Q Consensus 428 ~~~~~~~~~~~~la~~~~~~g~~---------------~~A~~~~~~al~~~p~ 466 (714)
.. ..+...+..+.+++..++. ++|.+.+.+|+...|.
T Consensus 174 ~~--~lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~ 225 (360)
T PF04910_consen 174 LS--LLPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPW 225 (360)
T ss_pred hh--hCccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence 00 0123567788888888888 8999999999988774
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.033 Score=55.64 Aligned_cols=74 Identities=18% Similarity=0.154 Sum_probs=66.8
Q ss_pred HHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005108 485 ARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASN 558 (714)
Q Consensus 485 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 558 (714)
++-.+|.+.++++.|+.+.+.++.+.|+++.-+..+|.+|.++|.+..|...++..++..|+++.+-.-...+.
T Consensus 186 nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~ 259 (269)
T PRK10941 186 TLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIH 259 (269)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHH
Confidence 44677999999999999999999999999999999999999999999999999999999999987765554443
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.25 E-value=2.3 Score=53.61 Aligned_cols=66 Identities=12% Similarity=-0.034 Sum_probs=59.7
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Q 005108 513 NSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPD 580 (714)
Q Consensus 513 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~ 580 (714)
-.+.|...|.+..+.|+++.|..++-+|.+.. -++++...|..+...|+-..|+..+++.++.+-.
T Consensus 1669 ~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~ 1734 (2382)
T KOG0890|consen 1669 LGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFP 1734 (2382)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcc
Confidence 37899999999999999999999999998877 4688999999999999999999999999976533
|
|
| >PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.22 Score=41.97 Aligned_cols=92 Identities=25% Similarity=0.357 Sum_probs=70.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-------cC
Q 005108 246 KRMGNELYRKGCFGEALSMYDKAISLAPR------------NAAFRSNRAAALTGLGRIGEAVKECEEAVR-------LD 306 (714)
Q Consensus 246 ~~~g~~~~~~g~~~~Al~~~~~al~~~p~------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~-------~~ 306 (714)
...|...+..|-|++|...|.++.+.... +..++..|+.++..+|+|++++...++++. ++
T Consensus 13 Ls~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~ 92 (144)
T PF12968_consen 13 LSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELH 92 (144)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TT
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccc
Confidence 34566678889999999999999986422 256788899999999999998888777764 44
Q ss_pred CCc----HHHHHHHHHHHHHcCCHHHHHHHHHhhc
Q 005108 307 PNY----WRAHQRLGSLLVRLGQVENARRHLCLSG 337 (714)
Q Consensus 307 p~~----~~a~~~la~~~~~~g~~~~A~~~~~~al 337 (714)
.+. ..+.+..+..+...|+.++|+..|+.+.
T Consensus 93 qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~ag 127 (144)
T PF12968_consen 93 QDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAG 127 (144)
T ss_dssp STHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 443 4456778889999999999999998764
|
The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D. |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.34 Score=43.78 Aligned_cols=86 Identities=19% Similarity=0.100 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 005108 242 AEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLV 321 (714)
Q Consensus 242 ~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~ 321 (714)
...+......-...++.+++...++.+-.+.|+.+..-..-|.+++..|+|.+|+..|+.+.+..|..+.+--.++.|+.
T Consensus 10 v~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~ 89 (160)
T PF09613_consen 10 VGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLY 89 (160)
T ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHH
Confidence 35677788888899999999999999999999999999999999999999999999999999999999988899999999
Q ss_pred HcCCHH
Q 005108 322 RLGQVE 327 (714)
Q Consensus 322 ~~g~~~ 327 (714)
.+++..
T Consensus 90 ~~~D~~ 95 (160)
T PF09613_consen 90 ALGDPS 95 (160)
T ss_pred HcCChH
Confidence 988864
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.0088 Score=39.40 Aligned_cols=29 Identities=14% Similarity=0.054 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC
Q 005108 550 ALLRRAASNSKLEKWADAVRDFEVLRREL 578 (714)
Q Consensus 550 ~~~~la~~~~~~g~~~eA~~~~~~al~~~ 578 (714)
+|.+||.+|.++|+|++|+++|++++.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALA 29 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 47899999999999999999999966543
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.57 Score=42.53 Aligned_cols=141 Identities=11% Similarity=-0.027 Sum_probs=99.9
Q ss_pred HHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCC----H
Q 005108 439 VRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSN----S 514 (714)
Q Consensus 439 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~----~ 514 (714)
.-+.-+...++.++|+..|...-+..-....++..+ ..+.+..+.|+-..|+.+|.++-+..+-- -
T Consensus 63 laAL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~m----------r~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd 132 (221)
T COG4649 63 LAALKLAQENKTDDALAAFTDLEKTGYGSYPVLARM----------RAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRD 132 (221)
T ss_pred HHHHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHH----------HHHHHHhhcccHHHHHHHHHHHhccCCCcchhhH
Confidence 344555667889999999988776655554444333 44888999999999999999987754321 2
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 005108 515 VLYCNRAACWFKLGQWERSVEDSNQALL-IQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAESLFH 590 (714)
Q Consensus 515 ~~~~~la~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~L~~ 590 (714)
.+...-+.++...|-|++-....+..-. -+|--..+...||..-++.|++.+|...|++... +-+-++......+
T Consensus 133 ~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprnirqRAq 208 (221)
T COG4649 133 LARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQ 208 (221)
T ss_pred HHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHHHHH
Confidence 3455567788889999988776665422 3444457778899999999999999999998877 4344444333333
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.28 Score=53.19 Aligned_cols=59 Identities=17% Similarity=0.112 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------------CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 005108 243 EELKRMGNELYRKGCFGEALSMYDKAISLA-------------PRNAAFRSNRAAALTGLGRIGEAVKECEE 301 (714)
Q Consensus 243 ~~~~~~g~~~~~~g~~~~Al~~~~~al~~~-------------p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 301 (714)
..|..+|+..+..=+++-|.+.|.++-.+. .....--..+|..+.-.|++.+|.+.|.+
T Consensus 586 ~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iLlA~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 586 TDWRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPNDLLLADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred chHHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhhhHHHHHHHHHH
Confidence 346667777777778888888877653110 00001123456666666666666666654
|
|
| >KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.0069 Score=60.82 Aligned_cols=115 Identities=27% Similarity=0.330 Sum_probs=96.2
Q ss_pred HHhHHhhCcCHHHHHHHHHHhhccCC-------------------CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Q 005108 486 RGNDLFKSERFTEACQAYGEGLRFDP-------------------SNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPN 546 (714)
Q Consensus 486 ~g~~~~~~g~~~~A~~~~~~al~~~p-------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 546 (714)
.+...++.++|+.|..-|.+++..-. .-...+.+++.+-.+.+.+..|+.....+++.++.
T Consensus 228 ~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s 307 (372)
T KOG0546|consen 228 IGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALRDERS 307 (372)
T ss_pred cchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceeccccccccChh
Confidence 36677888888888888877765311 11345677899999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhcc
Q 005108 547 YTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAESLFHAQVSLKKSRG 600 (714)
Q Consensus 547 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~L~~~~~~l~~~~~ 600 (714)
...+++.++..+..+.++++|++.++.+....|++.++.+.+.......+...+
T Consensus 308 ~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~~~~~~ 361 (372)
T KOG0546|consen 308 KTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKKKQYNR 361 (372)
T ss_pred hCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHHHHHHH
Confidence 999999999999999999999999999999999999999988877766665443
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=96.08 E-value=3.7 Score=46.90 Aligned_cols=125 Identities=12% Similarity=-0.051 Sum_probs=74.5
Q ss_pred HHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHH
Q 005108 443 IEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAA 522 (714)
Q Consensus 443 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 522 (714)
.-....+.+.|...+.+......-..+....+ ...+|.-....+...+|..++..+..... +...+.....
T Consensus 250 ~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~--------~~~lA~~~a~~~~~~~a~~w~~~~~~~~~-~~~~~e~r~r 320 (644)
T PRK11619 250 ASVARQDAENARLMIPSLVRAQKLNEDQRQEL--------RDIVAWRLMGNDVTDEQAKWRDDVIMRSQ-STSLLERRVR 320 (644)
T ss_pred HHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHH--------HHHHHHHHHhccCCHHHHHHHHhcccccC-CcHHHHHHHH
Confidence 34455667788888876544443332222111 01123333333235677777776554332 3333444444
Q ss_pred HHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 005108 523 CWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRR 576 (714)
Q Consensus 523 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~ 576 (714)
.....++++.+...+..+-.........+|.+|.++..+|+.++|..+|+++..
T Consensus 321 ~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 321 MALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 555788888887777775443445667888888888888999999888888744
|
|
| >KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.022 Score=55.83 Aligned_cols=78 Identities=18% Similarity=0.172 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 005108 242 AEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSL 319 (714)
Q Consensus 242 ~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~ 319 (714)
+..-...+....+.|+.++|..+|+-|++++|.+++++...|.......+.-+|-.+|-+|+.++|.+.+++.+.+..
T Consensus 116 A~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT 193 (472)
T KOG3824|consen 116 AILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRART 193 (472)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhcc
Confidence 344456777788999999999999999999999999999999999999999999999999999999999988777654
|
|
| >cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.0086 Score=46.44 Aligned_cols=57 Identities=28% Similarity=0.425 Sum_probs=42.5
Q ss_pred EEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCcch----hhhCCccccceEEEEeCCeEEE
Q 005108 632 VVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGV----AHAENVRIVPTFKIYKNGSRMK 695 (714)
Q Consensus 632 vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~l----~~~~~v~~~Pt~~~~~~G~~~~ 695 (714)
++.|..+||+.|+.+...|.+.. +.|..+|++..+++ ....+...+|++ +.+|+.+.
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~-----i~~~~~di~~~~~~~~~l~~~~~~~~~P~~--~~~~~~ig 62 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLG-----IEFEEIDILEDGELREELKELSGWPTVPQI--FINGEFIG 62 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC-----CcEEEEECCCCHHHHHHHHHHhCCCCcCEE--EECCEEEe
Confidence 56788999999999999988764 66778888876653 334477788876 45887655
|
GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which |
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.072 Score=56.11 Aligned_cols=95 Identities=15% Similarity=0.042 Sum_probs=83.4
Q ss_pred HHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcc-HHHHHHHHHHHHH
Q 005108 498 EACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEK-WADAVRDFEVLRR 576 (714)
Q Consensus 498 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~eA~~~~~~al~ 576 (714)
.-...|+.|+...+.|..+|........+.+.+.+--..|.+++..+|++++.|..-|.-.+..+. .+.|...|.++++
T Consensus 89 rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR 168 (568)
T KOG2396|consen 89 RIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLR 168 (568)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhh
Confidence 445678889998899999999998888888889999999999999999999999988888777776 9999999999999
Q ss_pred hCCCCHHHHHHHHHHH
Q 005108 577 ELPDDNEIAESLFHAQ 592 (714)
Q Consensus 577 ~~p~~~~~~~~L~~~~ 592 (714)
.+|+.+.++....+..
T Consensus 169 ~npdsp~Lw~eyfrmE 184 (568)
T KOG2396|consen 169 FNPDSPKLWKEYFRME 184 (568)
T ss_pred cCCCChHHHHHHHHHH
Confidence 9999999887666543
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.13 Score=49.78 Aligned_cols=200 Identities=16% Similarity=0.161 Sum_probs=117.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHH-CCCHHHHHHHHHH---HHhcCCC---c
Q 005108 242 AEELKRMGNELYRKGCFGEALSMYDKAISLA-----PRNAAFRSNRAAALTG-LGRIGEAVKECEE---AVRLDPN---Y 309 (714)
Q Consensus 242 ~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~-----p~~~~~~~~la~~~~~-~g~~~~A~~~~~~---al~~~p~---~ 309 (714)
-.++..+....+..++|++-++.|.+.+..- .+..+--.+-..-|.. ..+.+--.+.|+. |++-..+ +
T Consensus 65 FKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLW 144 (440)
T KOG1464|consen 65 FKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLW 144 (440)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceee
Confidence 3567778889999999999999999987531 1111111111111111 1222222222322 2222111 2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhhcC-----CCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 005108 310 WRAHQRLGSLLVRLGQVENARRHLCLSGQ-----QADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADF 384 (714)
Q Consensus 310 ~~a~~~la~~~~~~g~~~~A~~~~~~al~-----~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~ 384 (714)
...-..||.+|+..+.|.+-.+.+.+.-+ ....+.....+.++.+--....|-..++..+-...|++++......
T Consensus 145 FKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAI 224 (440)
T KOG1464|consen 145 FKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAI 224 (440)
T ss_pred eeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccC
Confidence 33445689999998888877776665543 2222222334455555555666778888888888899988774322
Q ss_pred C-----HHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhC
Q 005108 385 S-----PQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALG 448 (714)
Q Consensus 385 ~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 448 (714)
. ..+.-+-|.++++.|+|++|...|-++++......+... ....-|..+|..+++.|
T Consensus 225 PHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRR-------ttCLKYLVLANMLmkS~ 286 (440)
T KOG1464|consen 225 PHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRR-------TTCLKYLVLANMLMKSG 286 (440)
T ss_pred CchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcch-------hHHHHHHHHHHHHHHcC
Confidence 1 223334567789999999999988888876554421111 12334666777777655
|
|
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.049 Score=44.50 Aligned_cols=66 Identities=15% Similarity=0.106 Sum_probs=45.0
Q ss_pred HHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhccH
Q 005108 499 ACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNY--TKALLRRAASNSKLEKW 564 (714)
Q Consensus 499 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~ 564 (714)
.+..+++.++.+|++..+.+.+|..+...|++++|++.+-.+++.++++ ..+...+-.++..+|.-
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~ 74 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPG 74 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCC
Confidence 3456777788888888888888888888888888888888888877665 34444444555444443
|
|
| >PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.079 Score=44.36 Aligned_cols=91 Identities=16% Similarity=0.196 Sum_probs=71.4
Q ss_pred HhHHhhCcCHHHHHHHHHHhhccCCCCH---HHHHHHHHHHHHhCC-----------HHHHHHHHHHHHHhCCCCHHHHH
Q 005108 487 GNDLFKSERFTEACQAYGEGLRFDPSNS---VLYCNRAACWFKLGQ-----------WERSVEDSNQALLIQPNYTKALL 552 (714)
Q Consensus 487 g~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~-----------~~~A~~~~~~al~~~p~~~~~~~ 552 (714)
+..++..|++-+|+++.++.+...+++. .++...|.++.++.. .-.+++.|.++..+.|+.+..++
T Consensus 3 A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L~ 82 (111)
T PF04781_consen 3 AKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSLF 82 (111)
T ss_pred HHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHHH
Confidence 6778999999999999999999887765 566667888866542 45788899999999999877777
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHHh
Q 005108 553 RRAASNSKLEKWADAVRDFEVLRRE 577 (714)
Q Consensus 553 ~la~~~~~~g~~~eA~~~~~~al~~ 577 (714)
.+|.-+....-|++++..-++++..
T Consensus 83 ~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 83 ELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 7777766666677777766666653
|
|
| >TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.029 Score=62.63 Aligned_cols=79 Identities=14% Similarity=0.148 Sum_probs=67.4
Q ss_pred CceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCcchhhhCCccccceEEEEeCCeEEEEEcCC-CHHHHHH
Q 005108 629 GVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKEIVCP-SRDMLEH 707 (714)
Q Consensus 629 ~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~~~~g~-~~~~l~~ 707 (714)
.+.+..|..+.|+.|......++++....|++.+-.+|..+.+++++.|+|..+|++++ ||+.+ ..|. +.+++.+
T Consensus 118 ~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~i~~~~id~~~~~~~~~~~~v~~VP~~~i--~~~~~--~~g~~~~~~~~~ 193 (515)
T TIGR03140 118 PLHFETYVSLTCQNCPDVVQALNQMALLNPNISHTMIDGALFQDEVEALGIQGVPAVFL--NGEEF--HNGRMDLAELLE 193 (515)
T ss_pred CeEEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEchhCHHHHHhcCCcccCEEEE--CCcEE--EecCCCHHHHHH
Confidence 35577899999999999999999999999999988999999999999999999999976 77644 4566 7777776
Q ss_pred HHhh
Q 005108 708 SVRH 711 (714)
Q Consensus 708 ~~~~ 711 (714)
.+..
T Consensus 194 ~l~~ 197 (515)
T TIGR03140 194 KLEE 197 (515)
T ss_pred HHhh
Confidence 6653
|
This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP. |
| >PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.017 Score=53.49 Aligned_cols=79 Identities=24% Similarity=0.410 Sum_probs=60.2
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhC--C-CcEEEEEeccc-----------------------------------
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRY--P-SINFLKVDIDE----------------------------------- 669 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~--~-~~~~~~vd~d~----------------------------------- 669 (714)
..++|+.|....|+.|..+.+.+.++..++ + .+.|+.+++-.
T Consensus 12 a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (162)
T PF13462_consen 12 APITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPVPLDKHSSLRAAMAAECVADQGKYFWFFHELLFSQQEN 91 (162)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEESSSSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHCHS
T ss_pred CCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEccccchhHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhc
Confidence 347889999999999999999999998887 4 47777776421
Q ss_pred ---------------------------------CcchhhhCCccccceEEEEeCCeEEEEEcCC-CHHHHHHHHhh
Q 005108 670 ---------------------------------SPGVAHAENVRIVPTFKIYKNGSRMKEIVCP-SRDMLEHSVRH 711 (714)
Q Consensus 670 ---------------------------------~~~l~~~~~v~~~Pt~~~~~~G~~~~~~~g~-~~~~l~~~~~~ 711 (714)
....++.++|.++|||+| ||+.+ .|. +.++|...|++
T Consensus 92 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~tPt~~i--nG~~~---~~~~~~~~l~~~Id~ 162 (162)
T PF13462_consen 92 FENKKDIAANAGGSNEQFNKCLNSDEIKAQLEADSQLARQLGITGTPTFFI--NGKYV---VGPYTIEELKELIDK 162 (162)
T ss_dssp TSSHHHHHHHTTSHHHHHHHHHTSHHHHHHHHHHHHHHHHHT-SSSSEEEE--TTCEE---ETTTSHHHHHHHHHH
T ss_pred cchhHHHHHHcCCCHHHHHHHhhchHHHHHHHHHHHHHHHcCCccccEEEE--CCEEe---CCCCCHHHHHHHHcC
Confidence 011144669999999988 99985 566 99999999875
|
... |
| >KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.96 Score=45.26 Aligned_cols=60 Identities=12% Similarity=0.037 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Q 005108 244 ELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRL 305 (714)
Q Consensus 244 ~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 305 (714)
.-+.+-+...+..+..+-++....|++++|+.+.+|..++.- ..--..+|.+.|+++++.
T Consensus 186 ~e~eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEE--Ea~Ti~~AE~l~k~ALka 245 (556)
T KOG3807|consen 186 PEDEIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEE--EATTIVDAERLFKQALKA 245 (556)
T ss_pred hHHHHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhh--hhhhHHHHHHHHHHHHHH
Confidence 334455566677777888888888888888888877777653 223456777777777764
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.91 Score=41.27 Aligned_cols=142 Identities=11% Similarity=0.061 Sum_probs=75.7
Q ss_pred HHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHh
Q 005108 397 LKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNN 476 (714)
Q Consensus 397 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 476 (714)
.+.++.++|+..|..+-+..-...+ ..+.+..+.+....|+...|+..|.++-...+-. .....+.+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~Yp------------vLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P-~~~rd~AR 135 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYP------------VLARMRAATLLAQKGDTAAAVAAFDEIAADTSIP-QIGRDLAR 135 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcch------------HHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCc-chhhHHHH
Confidence 3445556666666655554444321 4455566666666666666666666655433322 22212222
Q ss_pred HHHHHHHHHHHhHHhhCcCHHHHHHHHHHhh-ccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 005108 477 VKLVARARARGNDLFKSERFTEACQAYGEGL-RFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRA 555 (714)
Q Consensus 477 l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 555 (714)
+ .-+..+...|-|++-....+..- ..+|-...+...||..-++.|++.+|..+|.++.. +..-+....+++
T Consensus 136 l-------raa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprnirqRA 207 (221)
T COG4649 136 L-------RAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRA 207 (221)
T ss_pred H-------HHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHHHH
Confidence 2 12555666666666555444321 22344455556677777777777777777776655 333344444555
Q ss_pred HHHH
Q 005108 556 ASNS 559 (714)
Q Consensus 556 ~~~~ 559 (714)
++.+
T Consensus 208 q~ml 211 (221)
T COG4649 208 QIML 211 (221)
T ss_pred HHHH
Confidence 5443
|
|
| >PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.087 Score=44.13 Aligned_cols=91 Identities=16% Similarity=0.163 Sum_probs=72.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHCCC-----------HHHHHHHHHHHHhcCCCcHHHH
Q 005108 248 MGNELYRKGCFGEALSMYDKAISLAPRNA---AFRSNRAAALTGLGR-----------IGEAVKECEEAVRLDPNYWRAH 313 (714)
Q Consensus 248 ~g~~~~~~g~~~~Al~~~~~al~~~p~~~---~~~~~la~~~~~~g~-----------~~~A~~~~~~al~~~p~~~~a~ 313 (714)
++..++..|++-+|+++.+..+..++++. ..+...|.++..+.. .-.|++.|.++..+.|..+..+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L 81 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL 81 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence 56789999999999999999999888775 556666888876542 3568999999999999998888
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhhcC
Q 005108 314 QRLGSLLVRLGQVENARRHLCLSGQ 338 (714)
Q Consensus 314 ~~la~~~~~~g~~~~A~~~~~~al~ 338 (714)
+.+|.-+.....|+++....++++.
T Consensus 82 ~~la~~l~s~~~Ykk~v~kak~~Ls 106 (111)
T PF04781_consen 82 FELASQLGSVKYYKKAVKKAKRGLS 106 (111)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 8888877666677777776666654
|
|
| >cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain) | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.04 Score=48.66 Aligned_cols=101 Identities=12% Similarity=0.187 Sum_probs=70.1
Q ss_pred eeeehhhhHHhhhccCCCceEEEeecC--CCcc-c-cccchHHHHHHhhCC-C-cEEEEEecccCcchhhhCCcc--ccc
Q 005108 612 VEEVSSLEQFRAAVSLPGVSVVHFKSA--SNLH-C-KQISPYVETLCGRYP-S-INFLKVDIDESPGVAHAENVR--IVP 683 (714)
Q Consensus 612 ~~~i~~~e~~~~~i~~~~~~vv~f~a~--~c~~-C-~~~~p~l~~l~~~~~-~-~~~~~vd~d~~~~l~~~~~v~--~~P 683 (714)
+.++++.+.+...-...+..++-|.-. .|.. + ..+...+.+++.++. . +.|+++|.++...+.+.|||. .+|
T Consensus 4 ~~~l~~~~~~~~~C~~~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~~~~~~~~fgl~~~~~P 83 (130)
T cd02983 4 IIELTSEDVFEETCEEKQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGAQLDLEEALNIGGFGYP 83 (130)
T ss_pred eEEecCHHHHHhhccCCCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCcccHHHHHHcCCCccCCC
Confidence 445555555554444455666666532 1222 2 345678888888885 3 899999999998999999995 499
Q ss_pred eEEEEeCCeEEEE-EcCC-CHHHHHHHHhhh
Q 005108 684 TFKIYKNGSRMKE-IVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 684 t~~~~~~G~~~~~-~~g~-~~~~l~~~~~~~ 712 (714)
+++++...+.... +.|. +.+.|+++++.+
T Consensus 84 ~v~i~~~~~~KY~~~~~~~t~e~i~~Fv~~~ 114 (130)
T cd02983 84 AMVAINFRKMKFATLKGSFSEDGINEFLREL 114 (130)
T ss_pred EEEEEecccCccccccCccCHHHHHHHHHHH
Confidence 9998844332333 6677 999999999876
|
Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI. |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.16 Score=45.80 Aligned_cols=105 Identities=10% Similarity=-0.063 Sum_probs=83.3
Q ss_pred HHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccH
Q 005108 485 ARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKW 564 (714)
Q Consensus 485 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 564 (714)
....+-...++.+++...+..+--+.|..+.+-..-|.++...|+|.+|+..++.+.+-.|..+.+--.++.|+..+++.
T Consensus 15 e~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~ 94 (160)
T PF09613_consen 15 EVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDP 94 (160)
T ss_pred HHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCCh
Confidence 44667778889999999999888899999999999999999999999999999999999999998888899999888875
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005108 565 ADAVRDFEVLRRELPDDNEIAESLFHA 591 (714)
Q Consensus 565 ~eA~~~~~~al~~~p~~~~~~~~L~~~ 591 (714)
+ =..+-+++++..+ ++.....+...
T Consensus 95 ~-Wr~~A~evle~~~-d~~a~~Lv~~L 119 (160)
T PF09613_consen 95 S-WRRYADEVLESGA-DPDARALVRAL 119 (160)
T ss_pred H-HHHHHHHHHhcCC-ChHHHHHHHHH
Confidence 3 2222344555443 55555444433
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.71 E-value=1.6 Score=49.17 Aligned_cols=250 Identities=15% Similarity=0.054 Sum_probs=138.2
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhH
Q 005108 281 NRAAALTGLGRIGEAVKECEEAVRLDPNY-WRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCT 359 (714)
Q Consensus 281 ~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~ 359 (714)
..-..+.+...|+-|+...+.- ..+++. ...+..+|.-+++.|++++|...|-+.+...++..... .
T Consensus 339 ~kL~iL~kK~ly~~Ai~LAk~~-~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~Vi~-----k------ 406 (933)
T KOG2114|consen 339 TKLDILFKKNLYKVAINLAKSQ-HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSEVIK-----K------ 406 (933)
T ss_pred HHHHHHHHhhhHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHHHHH-----H------
Confidence 4455677778888888776543 344443 56788889999999999999999999988777765421 1
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHH
Q 005108 360 DARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFV 439 (714)
Q Consensus 360 ~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~ 439 (714)
+.......+-..+++..++.+-.+.... ..+-.+|.++++.++-.++.++.- .. . .. .+ .-.
T Consensus 407 -fLdaq~IknLt~YLe~L~~~gla~~dht-tlLLncYiKlkd~~kL~efI~~~~----~g-~-~~-------fd---~e~ 468 (933)
T KOG2114|consen 407 -FLDAQRIKNLTSYLEALHKKGLANSDHT-TLLLNCYIKLKDVEKLTEFISKCD----KG-E-WF-------FD---VET 468 (933)
T ss_pred -hcCHHHHHHHHHHHHHHHHcccccchhH-HHHHHHHHHhcchHHHHHHHhcCC----Cc-c-ee-------ee---HHH
Confidence 1122233344455666666655433333 347899999999998877776543 11 0 00 00 011
Q ss_pred HHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCC-HHHHH
Q 005108 440 RAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSN-SVLYC 518 (714)
Q Consensus 440 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~ 518 (714)
.-.++.+.+-+++|..+..+.-. +..+. -.++...++|++|+.++... .|.. .....
T Consensus 469 al~Ilr~snyl~~a~~LA~k~~~----he~vl---------------~ille~~~ny~eAl~yi~sl---p~~e~l~~l~ 526 (933)
T KOG2114|consen 469 ALEILRKSNYLDEAELLATKFKK----HEWVL---------------DILLEDLHNYEEALRYISSL---PISELLRTLN 526 (933)
T ss_pred HHHHHHHhChHHHHHHHHHHhcc----CHHHH---------------HHHHHHhcCHHHHHHHHhcC---CHHHHHHHHH
Confidence 12334444555555555444322 22232 23467788999999988752 2222 34445
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHH-hC-CCCHHHH----HHHHHHHHHhccHHHHHHHHHHHHHhCCCCHH
Q 005108 519 NRAACWFKLGQWERSVEDSNQALL-IQ-PNYTKAL----LRRAASNSKLEKWADAVRDFEVLRRELPDDNE 583 (714)
Q Consensus 519 ~la~~~~~~g~~~~A~~~~~~al~-~~-p~~~~~~----~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~ 583 (714)
..|..+.... .++-...+-+.+. .. +...... ...-.+..-.++++.-..+++...+.-|+.++
T Consensus 527 kyGk~Ll~h~-P~~t~~ili~~~t~~~~~~~~~~~s~~~~~~~~i~if~~~~~~~~~Fl~~~~E~s~~s~e 596 (933)
T KOG2114|consen 527 KYGKILLEHD-PEETMKILIELITELNSQGKGKSLSNIPDSIEFIGIFSQNYQILLNFLESMSEISPDSEE 596 (933)
T ss_pred HHHHHHHhhC-hHHHHHHHHHHHhhcCCCCCCchhhcCccchhheeeeccCHHHHHHHHHHHHhcCCCchh
Confidence 5666665533 3333333333332 11 1110000 11122333445666666666666666666555
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 714 | ||||
| 3fp2_A | 537 | Crystal Structure Of Tom71 Complexed With Hsp82 C-T | 2e-15 | ||
| 3lca_A | 533 | Structure Of Tom71 Complexed With Hsp70 Ssa1 C Term | 2e-15 | ||
| 2vyi_A | 131 | Crystal Structure Of The Tpr Domain Of Human Sgt Le | 4e-13 | ||
| 2gw1_A | 514 | Crystal Structure Of The Yeast Tom70 Length = 514 | 1e-12 | ||
| 4gco_A | 126 | Central Domain Of Stress-Induced Protein-1 (Sti-1) | 6e-12 | ||
| 1wao_1 | 477 | Pp5 Structure Length = 477 | 2e-11 | ||
| 2bug_A | 140 | Solution Structure Of The Tpr Domain From Protein P | 3e-11 | ||
| 1a17_A | 166 | Tetratricopeptide Repeats Of Protein Phosphatase 5 | 6e-11 | ||
| 1syr_A | 112 | Initial Structural Analysis Of Plasmodium Falciparu | 2e-10 | ||
| 2lni_A | 133 | Solution Nmr Structure Of Stress-Induced-Phosphopro | 6e-10 | ||
| 1elw_A | 118 | Crystal Structure Of The Tpr1 Domain Of Hop In Comp | 2e-09 | ||
| 1trs_A | 105 | The High-Resolution Three-Dimensional Solution Stru | 4e-09 | ||
| 2ifq_A | 105 | Crystal Structure Of S-Nitroso Thioredoxin Length = | 5e-09 | ||
| 3m9j_A | 105 | Crystal Structure Of Human Thioredoxin C6973S DOUBL | 7e-09 | ||
| 2ifq_B | 105 | Crystal Structure Of S-Nitroso Thioredoxin Length = | 1e-08 | ||
| 3trx_A | 105 | High-Resolution Three-Dimensional Structure Of Redu | 1e-08 | ||
| 2hsh_A | 105 | Crystal Structure Of C73s Mutant Of Human Thioredox | 2e-08 | ||
| 2oe0_A | 114 | Crystal Structure Of Mitochondrial Thioredoxin 3 Fr | 3e-08 | ||
| 2i9h_A | 103 | Nmr Solution Structure Of The Reduced Form Of Thior | 3e-08 | ||
| 3f3q_A | 109 | Crystal Structure Of The Oxidised Form Of Thioredox | 3e-08 | ||
| 3kd0_A | 105 | Human Thioredoxin C35s,C62s,C69s,C73s Mutant Showin | 4e-08 | ||
| 1aiu_A | 105 | Human Thioredoxin (D60n Mutant, Reduced Form) Lengt | 4e-08 | ||
| 2j23_A | 121 | Cross-Reactivity And Crystal Structure Of Malassezi | 5e-08 | ||
| 1mdi_A | 105 | High Resolution Solution Nmr Structure Of Mixed Dis | 6e-08 | ||
| 1ti3_A | 113 | Solution Structure Of The Thioredoxin H1 From Popla | 6e-08 | ||
| 1erw_A | 105 | Human Thioredoxin Double Mutant With Cys 32 Replace | 8e-08 | ||
| 1ihg_A | 370 | Bovine Cyclophilin 40, Monoclinic Form Length = 370 | 9e-08 | ||
| 3qfa_C | 116 | Crystal Structure Of The Human Thioredoxin Reductas | 1e-07 | ||
| 3kd7_A | 125 | Designed Tpr Module (Ctpr390) In Complex With Its P | 3e-07 | ||
| 3e3e_A | 105 | Human Thioredoxin Double Mutant C35s,C73r Length = | 3e-07 | ||
| 3f3r_A | 109 | Crystal Structure Of Yeast Thioredoxin1-Glutathione | 4e-07 | ||
| 1m7t_A | 107 | Solution Structure And Dynamics Of The Human-Escher | 5e-07 | ||
| 1xfl_A | 124 | Solution Structure Of Thioredoxin H1 From Arabidops | 7e-07 | ||
| 3upv_A | 126 | Tpr2b-Domain:phsp70-Complex Of Yeast Sti1 Length = | 8e-07 | ||
| 2dba_A | 148 | The Solution Structure Of The Tetratrico Peptide Re | 1e-06 | ||
| 1wmj_A | 130 | Solution Structure Of Thioredoxin Type H From Oryza | 2e-06 | ||
| 3sz7_A | 164 | Crystal Structure Of The Sgt2 Tpr Domain From Asper | 2e-06 | ||
| 3d21_A | 139 | Crystal Structure Of A Poplar Wild-Type Thioredoxin | 2e-06 | ||
| 1fb0_A | 105 | Crystal Structure Of Thioredoxin M From Spinach Chl | 2e-06 | ||
| 3uq3_A | 258 | Tpr2ab-Domain:phsp90-Complex Of Yeast Sti1 Length = | 3e-06 | ||
| 2vm1_A | 118 | Crystal Structure Of Barley Thioredoxin H Isoform 1 | 4e-06 | ||
| 1r26_A | 125 | Crystal Structure Of Thioredoxin From Trypanosoma B | 5e-06 | ||
| 1gl8_A | 104 | Solution Structure Of Thioredoxin M From Spinach, O | 5e-06 | ||
| 2c2l_A | 281 | Crystal Structure Of The Chip U-Box E3 Ubiquitin Li | 5e-06 | ||
| 1gh2_A | 107 | Crystal Structure Of The Catalytic Domain Of A New | 1e-05 | ||
| 3q47_B | 137 | Crystal Structure Of Tpr Domain Of Chip Complexed W | 1e-05 | ||
| 3zzx_A | 105 | Crystallographic Structure Of Thioredoxin From Lito | 1e-05 | ||
| 1t00_A | 112 | The Structure Of Thioredoxin From S. Coelicolor Len | 1e-05 | ||
| 2xbq_A | 117 | Crystal Structure Of Reduced Schistosoma Mansoni Th | 2e-05 | ||
| 3die_A | 106 | Domain Swapping Of Staphylococcus Aureus Thioredoxi | 2e-05 | ||
| 2hxk_A | 105 | Crystal Structure Of S-Nitroso Thioredoxin Length = | 3e-05 | ||
| 2if4_A | 338 | Crystal Structure Of A Multi-Domain Immunophilin Fr | 3e-05 | ||
| 2o87_A | 106 | S. Aureus Thioredoxin P31s Mutant Length = 106 | 4e-05 | ||
| 2puk_C | 106 | Crystal Srtucture Of The Binary Complex Between Fer | 4e-05 | ||
| 3rkv_A | 162 | C-Terminal Domain Of Protein C56c10.10, A Putative | 4e-05 | ||
| 2o85_A | 107 | S. Aureus Thioredoxin P31t Mutant Length = 107 | 4e-05 | ||
| 2vlt_A | 122 | Crystal Structure Of Barley Thioredoxin H Isoform 2 | 5e-05 | ||
| 2xbi_A | 108 | Crystal Structure Of Schistosoma Mansoni Thioredoxi | 5e-05 | ||
| 2o7k_A | 107 | S. Aureus Thioredoxin Length = 107 | 5e-05 | ||
| 2y4t_A | 450 | Crystal Structure Of The Human Co-Chaperone P58(Ipk | 6e-05 | ||
| 2hsy_A | 104 | Solution Structure Of Thioredoxin 2 From Saccharomy | 7e-05 | ||
| 2fa4_A | 111 | Crystal Structure Of Oxidized Form From Saccharomyc | 7e-05 | ||
| 3d22_A | 139 | Crystal Structure Of A Poplar Thioredoxin H Mutant, | 7e-05 | ||
| 1na0_A | 125 | Design Of Stable Alpha-Helical Arrays From An Ideal | 8e-05 | ||
| 1f9m_A | 112 | Crystal Structure Of Thioredoxin F From Spinach Chl | 1e-04 | ||
| 1faa_A | 124 | Crystal Structure Of Thioredoxin F From Spinach Chl | 1e-04 | ||
| 2e0q_A | 104 | Crystal Structure Of K53e Thioredoxin From Sulfolob | 1e-04 | ||
| 1dby_A | 107 | Nmr Structures Of Chloroplast Thioredoxin M Ch2 Fro | 2e-04 | ||
| 2vim_A | 104 | X-Ray Structure Of Fasciola Hepatica Thioredoxin Le | 2e-04 | ||
| 2fd3_A | 108 | Crystal Structure Of Thioredoxin Mutant P34h Length | 3e-04 | ||
| 1xwa_A | 111 | Drospohila Thioredoxin, Oxidized, P41212 Length = 1 | 3e-04 | ||
| 1xw9_A | 106 | Drospohila Thioredoxin, Oxidized, P21 Length = 106 | 3e-04 | ||
| 3pe3_A | 723 | Structure Of Human O-Glcnac Transferase And Its Com | 5e-04 | ||
| 1na3_A | 91 | Design Of Stable Alpha-Helical Arrays From An Ideal | 5e-04 | ||
| 2diy_A | 130 | The Solution Structure Of The Thioredoxin Domain Of | 5e-04 | ||
| 2wqh_A | 125 | Crystal Structure Of Ctpr3y3 Length = 125 | 5e-04 | ||
| 1v98_A | 140 | Crystal Structure Analysis Of Thioredoxin From Ther | 5e-04 | ||
| 2y4u_A | 450 | Crystal Structure Of Human P58(Ipk) In Space Group | 6e-04 | ||
| 2wz9_A | 153 | Crystal Structure Of The Thioredoxin Domain Of Huma | 7e-04 | ||
| 2o89_A | 107 | S. Aureus Thioredoxin P31tC32S MUTANT Length = 107 | 7e-04 | ||
| 2iwt_A | 125 | Thioredoxin H2 (Hvtrxh2) In A Mixed Disulfide Compl | 7e-04 |
| >pdb|3FP2|A Chain A, Crystal Structure Of Tom71 Complexed With Hsp82 C-Terminal Fragment Length = 537 | Back alignment and structure |
|
| >pdb|3LCA|A Chain A, Structure Of Tom71 Complexed With Hsp70 Ssa1 C Terminal Tail Indicating Conformational Plasticity Length = 533 | Back alignment and structure |
|
| >pdb|2VYI|A Chain A, Crystal Structure Of The Tpr Domain Of Human Sgt Length = 131 | Back alignment and structure |
|
| >pdb|2GW1|A Chain A, Crystal Structure Of The Yeast Tom70 Length = 514 | Back alignment and structure |
|
| >pdb|4GCO|A Chain A, Central Domain Of Stress-Induced Protein-1 (Sti-1) From C.Elegans Length = 126 | Back alignment and structure |
|
| >pdb|1WAO|1 Chain 1, Pp5 Structure Length = 477 | Back alignment and structure |
|
| >pdb|1A17|A Chain A, Tetratricopeptide Repeats Of Protein Phosphatase 5 Length = 166 | Back alignment and structure |
|
| >pdb|1SYR|A Chain A, Initial Structural Analysis Of Plasmodium Falciparum Thioredoxin Length = 112 | Back alignment and structure |
|
| >pdb|2LNI|A Chain A, Solution Nmr Structure Of Stress-Induced-Phosphoprotein 1 Sti1 From Homo Sapiens, Northeast Structural Genomics Consortium Target Hr4403e Length = 133 | Back alignment and structure |
|
| >pdb|1ELW|A Chain A, Crystal Structure Of The Tpr1 Domain Of Hop In Complex With A Hsc70 Peptide Length = 118 | Back alignment and structure |
|
| >pdb|1TRS|A Chain A, The High-Resolution Three-Dimensional Solution Structures Of The Oxidized And Reduced States Of Human Thioredoxin Length = 105 | Back alignment and structure |
|
| >pdb|2IFQ|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin Length = 105 | Back alignment and structure |
|
| >pdb|3M9J|A Chain A, Crystal Structure Of Human Thioredoxin C6973S DOUBLE MUTANT, REDUCED Form Length = 105 | Back alignment and structure |
|
| >pdb|2IFQ|B Chain B, Crystal Structure Of S-Nitroso Thioredoxin Length = 105 | Back alignment and structure |
|
| >pdb|3TRX|A Chain A, High-Resolution Three-Dimensional Structure Of Reduced Recombinant Human Thioredoxin In Solution Length = 105 | Back alignment and structure |
|
| >pdb|2HSH|A Chain A, Crystal Structure Of C73s Mutant Of Human Thioredoxin-1 Oxidized With H2o2 Length = 105 | Back alignment and structure |
|
| >pdb|2OE0|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From Saccharomyces Cerevisiae Length = 114 | Back alignment and structure |
|
| >pdb|2I9H|A Chain A, Nmr Solution Structure Of The Reduced Form Of Thioredoxin 1 From Yeast (Trx1) Length = 103 | Back alignment and structure |
|
| >pdb|3F3Q|A Chain A, Crystal Structure Of The Oxidised Form Of Thioredoxin 1 From Saccharomyces Cerevisiae Length = 109 | Back alignment and structure |
|
| >pdb|3KD0|A Chain A, Human Thioredoxin C35s,C62s,C69s,C73s Mutant Showing Cadmium Chloride Bound To The Active Site Length = 105 | Back alignment and structure |
|
| >pdb|1AIU|A Chain A, Human Thioredoxin (D60n Mutant, Reduced Form) Length = 105 | Back alignment and structure |
|
| >pdb|2J23|A Chain A, Cross-Reactivity And Crystal Structure Of Malassezia Sympodialis Thioredoxin (Mala S 13), A Member Of A New Pan- Allergen Family Length = 121 | Back alignment and structure |
|
| >pdb|1MDI|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide Intermediate Between Mutant Human Thioredoxin And A 13 Residue Peptide Comprising Its Target Site In Human Nfkb Length = 105 | Back alignment and structure |
|
| >pdb|1TI3|A Chain A, Solution Structure Of The Thioredoxin H1 From Poplar, A Cppc Active Site Variant Length = 113 | Back alignment and structure |
|
| >pdb|1ERW|A Chain A, Human Thioredoxin Double Mutant With Cys 32 Replaced By Ser And Cys 35 Replaced By Ser Length = 105 | Back alignment and structure |
|
| >pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form Length = 370 | Back alignment and structure |
|
| >pdb|3QFA|C Chain C, Crystal Structure Of The Human Thioredoxin Reductase-Thioredoxin Complex Length = 116 | Back alignment and structure |
|
| >pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its Peptide-Ligand (Hsp90 Peptide) Length = 125 | Back alignment and structure |
|
| >pdb|3E3E|A Chain A, Human Thioredoxin Double Mutant C35s,C73r Length = 105 | Back alignment and structure |
|
| >pdb|3F3R|A Chain A, Crystal Structure Of Yeast Thioredoxin1-Glutathione Mixed Disulfide Complex Length = 109 | Back alignment and structure |
|
| >pdb|1M7T|A Chain A, Solution Structure And Dynamics Of The Human-Escherichia Coli Thioredoxin Chimera: Insights Into Thermodynamic Stability Length = 107 | Back alignment and structure |
|
| >pdb|1XFL|A Chain A, Solution Structure Of Thioredoxin H1 From Arabidopsis Thaliana Length = 124 | Back alignment and structure |
|
| >pdb|3UPV|A Chain A, Tpr2b-Domain:phsp70-Complex Of Yeast Sti1 Length = 126 | Back alignment and structure |
|
| >pdb|2DBA|A Chain A, The Solution Structure Of The Tetratrico Peptide Repeat Of Human Smooth Muscle Cell Associated Protein-1, Isoform 2 Length = 148 | Back alignment and structure |
|
| >pdb|1WMJ|A Chain A, Solution Structure Of Thioredoxin Type H From Oryza Sativa Length = 130 | Back alignment and structure |
|
| >pdb|3SZ7|A Chain A, Crystal Structure Of The Sgt2 Tpr Domain From Aspergillus Fumigatus Length = 164 | Back alignment and structure |
|
| >pdb|3D21|A Chain A, Crystal Structure Of A Poplar Wild-Type Thioredoxin H, Pttrxh4 Length = 139 | Back alignment and structure |
|
| >pdb|1FB0|A Chain A, Crystal Structure Of Thioredoxin M From Spinach Chloroplast (Reduced Form) Length = 105 | Back alignment and structure |
|
| >pdb|3UQ3|A Chain A, Tpr2ab-Domain:phsp90-Complex Of Yeast Sti1 Length = 258 | Back alignment and structure |
|
| >pdb|2VM1|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 1 Crystallized Using Ammonium Sulfate As Precipitant Length = 118 | Back alignment and structure |
|
| >pdb|1R26|A Chain A, Crystal Structure Of Thioredoxin From Trypanosoma Brucei Brucei Length = 125 | Back alignment and structure |
|
| >pdb|1GL8|A Chain A, Solution Structure Of Thioredoxin M From Spinach, Oxidized Form Length = 104 | Back alignment and structure |
|
| >pdb|2C2L|A Chain A, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase Length = 281 | Back alignment and structure |
|
| >pdb|1GH2|A Chain A, Crystal Structure Of The Catalytic Domain Of A New Human Thioredoxin-Like Protein Length = 107 | Back alignment and structure |
|
| >pdb|3Q47|B Chain B, Crystal Structure Of Tpr Domain Of Chip Complexed With Pseudophosphorylated Smad1 Peptide Length = 137 | Back alignment and structure |
|
| >pdb|3ZZX|A Chain A, Crystallographic Structure Of Thioredoxin From Litopenaeus Vannamei Length = 105 | Back alignment and structure |
|
| >pdb|1T00|A Chain A, The Structure Of Thioredoxin From S. Coelicolor Length = 112 | Back alignment and structure |
|
| >pdb|2XBQ|A Chain A, Crystal Structure Of Reduced Schistosoma Mansoni Thioredoxin Pre-Protein At 1.7 Angstrom Length = 117 | Back alignment and structure |
|
| >pdb|3DIE|A Chain A, Domain Swapping Of Staphylococcus Aureus Thioredoxin W28a Mutant Length = 106 | Back alignment and structure |
|
| >pdb|2HXK|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin Length = 105 | Back alignment and structure |
|
| >pdb|2IF4|A Chain A, Crystal Structure Of A Multi-Domain Immunophilin From Arabidopsis Thaliana Length = 338 | Back alignment and structure |
|
| >pdb|2O87|A Chain A, S. Aureus Thioredoxin P31s Mutant Length = 106 | Back alignment and structure |
|
| >pdb|2PUK|C Chain C, Crystal Srtucture Of The Binary Complex Between Ferredoxin: Thioredoxin Reductase And Thioredoxin M Length = 106 | Back alignment and structure |
|
| >pdb|3RKV|A Chain A, C-Terminal Domain Of Protein C56c10.10, A Putative Peptidylprolyl Isomerase, From Caenorhabditis Elegans Length = 162 | Back alignment and structure |
|
| >pdb|2O85|A Chain A, S. Aureus Thioredoxin P31t Mutant Length = 107 | Back alignment and structure |
|
| >pdb|2VLT|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In The Oxidized State Length = 122 | Back alignment and structure |
|
| >pdb|2XBI|A Chain A, Crystal Structure Of Schistosoma Mansoni Thioredoxin At 1.6 Angstrom Length = 108 | Back alignment and structure |
|
| >pdb|2O7K|A Chain A, S. Aureus Thioredoxin Length = 107 | Back alignment and structure |
|
| >pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk) Length = 450 | Back alignment and structure |
|
| >pdb|2HSY|A Chain A, Solution Structure Of Thioredoxin 2 From Saccharomyces Cerevisiae Length = 104 | Back alignment and structure |
|
| >pdb|2FA4|A Chain A, Crystal Structure Of Oxidized Form From Saccharomyces Cerevisiae Length = 111 | Back alignment and structure |
|
| >pdb|3D22|A Chain A, Crystal Structure Of A Poplar Thioredoxin H Mutant, Pttrxh4c61s Length = 139 | Back alignment and structure |
|
| >pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 125 | Back alignment and structure |
|
| >pdb|1F9M|A Chain A, Crystal Structure Of Thioredoxin F From Spinach Chloroplast (Short Form) Length = 112 | Back alignment and structure |
|
| >pdb|1FAA|A Chain A, Crystal Structure Of Thioredoxin F From Spinach Chloroplast (Long Form) Length = 124 | Back alignment and structure |
|
| >pdb|2E0Q|A Chain A, Crystal Structure Of K53e Thioredoxin From Sulfolobus Tokodaii Strain7 Length = 104 | Back alignment and structure |
|
| >pdb|1DBY|A Chain A, Nmr Structures Of Chloroplast Thioredoxin M Ch2 From The Green Alga Chlamydomonas Reinhardtii Length = 107 | Back alignment and structure |
|
| >pdb|2VIM|A Chain A, X-Ray Structure Of Fasciola Hepatica Thioredoxin Length = 104 | Back alignment and structure |
|
| >pdb|2FD3|A Chain A, Crystal Structure Of Thioredoxin Mutant P34h Length = 108 | Back alignment and structure |
|
| >pdb|1XWA|A Chain A, Drospohila Thioredoxin, Oxidized, P41212 Length = 111 | Back alignment and structure |
|
| >pdb|1XW9|A Chain A, Drospohila Thioredoxin, Oxidized, P21 Length = 106 | Back alignment and structure |
|
| >pdb|3PE3|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex With A Peptide Substrate Length = 723 | Back alignment and structure |
|
| >pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 91 | Back alignment and structure |
|
| >pdb|2DIY|A Chain A, The Solution Structure Of The Thioredoxin Domain Of Human Thioredoxin-Like Protein 2 Length = 130 | Back alignment and structure |
|
| >pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3 Length = 125 | Back alignment and structure |
|
| >pdb|1V98|A Chain A, Crystal Structure Analysis Of Thioredoxin From Thermus Thermophilus Length = 140 | Back alignment and structure |
|
| >pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312 Length = 450 | Back alignment and structure |
|
| >pdb|2WZ9|A Chain A, Crystal Structure Of The Thioredoxin Domain Of Human Txnl2 Length = 153 | Back alignment and structure |
|
| >pdb|2O89|A Chain A, S. Aureus Thioredoxin P31tC32S MUTANT Length = 107 | Back alignment and structure |
|
| >pdb|2IWT|A Chain A, Thioredoxin H2 (Hvtrxh2) In A Mixed Disulfide Complex With The Target Protein Basi Length = 125 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 335 bits (860), Expect = e-109
Identities = 73/376 (19%), Positives = 154/376 (40%), Gaps = 35/376 (9%)
Query: 240 GDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKEC 299
D E+ +G +L G +ALS + A+ P N RA +G+ A+ +
Sbjct: 1 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDL 60
Query: 300 EEAVRLDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQA---DPT---------EVHR 347
+ + L ++ A + G LL++ G+++ A ++ +P+ ++ +
Sbjct: 61 TKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDF----KKVLKSNPSEQEEKEAESQLVK 116
Query: 348 LQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAES 407
+++ S+ DA D+ +A+ D + +L R E +K + A S
Sbjct: 117 ADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVW-DAELRELRAECFIKEGEPRKAIS 175
Query: 408 SLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRN 467
L K++ +EA+ + + + LG E +++ + ++D +
Sbjct: 176 DLKAASKLKSD------------NTEAF--YKISTLYYQLGDHELSLSEVRECLKLDQDH 221
Query: 468 VEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSN----SVLYCNRAAC 523
VK + + +L + R+T+A Y ++ +PS C
Sbjct: 222 KRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHC 281
Query: 524 WFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNE 583
+ K + ++ ++ L ++P+ AL RA + E + +A++D+E + +D +
Sbjct: 282 FSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQ 341
Query: 584 IAESLFHAQVSLKKSR 599
I E L AQ LK+S+
Sbjct: 342 IREGLEKAQRLLKQSQ 357
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 136 bits (344), Expect = 3e-35
Identities = 42/322 (13%), Positives = 93/322 (28%), Gaps = 71/322 (22%)
Query: 221 LAVGPENANVNRNRGGICGGD-AEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFR 279
L P + D + L+ + + + A++ DK + + +A R
Sbjct: 98 LKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELR 157
Query: 280 SNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQ 339
RA G +A+ + + A +L + A ++ +L +LG E + + ++
Sbjct: 158 ELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEV----RE 213
Query: 340 A---DP--TEVH----RLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSM 390
D +++ + K + + + G + A + ++ +
Sbjct: 214 CLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVM------------ 261
Query: 391 CRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRF 450
K EPS + +
Sbjct: 262 -----------------------KTEPS--------VAEYTVRSKER--ICHCFSKDEKP 288
Query: 451 ENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFD 510
A+ + Q++P NV L + R E + EA Q Y +
Sbjct: 289 VEAIRICSEVLQMEPDNVNA---LKD---------RAEAYLIEEMYDEAIQDYEAAQEHN 336
Query: 511 PSNSVLYCNRAACWFKLGQWER 532
++ + L Q ++
Sbjct: 337 ENDQQIREGLEKAQRLLKQSQK 358
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 324 bits (833), Expect = e-104
Identities = 74/380 (19%), Positives = 158/380 (41%), Gaps = 35/380 (9%)
Query: 241 DAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECE 300
D E+ +G +L G +ALS + A+ P N RA +G+ A+ +
Sbjct: 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLT 84
Query: 301 EAVRLDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQA---DP---------TEVHRL 348
+ ++L ++ A + G LL++ G+++ A ++ +P +++ +
Sbjct: 85 KVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDF----KKVLKSNPSENEEKEAQSQLIKS 140
Query: 349 QVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESS 408
+++ S+ +A GD+ +A+ D + +L R E +K + A S
Sbjct: 141 DEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVW-DAELRELRAECFIKEGEPRKAISD 199
Query: 409 LSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNV 468
L K++ +EA+ + + + LG E +++ + ++D +
Sbjct: 200 LKAASKLKND------------NTEAF--YKISTLYYQLGDHELSLSEVRECLKLDQDHK 245
Query: 469 EVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSN----SVLYCNRAACW 524
VK + + +L + R+T+A Y ++ +PS C+
Sbjct: 246 RCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCF 305
Query: 525 FKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEI 584
K + ++ ++ L ++P+ AL RA + E + +A++D+E + +D +I
Sbjct: 306 SKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQI 365
Query: 585 AESLFHAQVSLKKSRGEEVY 604
E L AQ LK+S+ + Y
Sbjct: 366 REGLEKAQRLLKQSQKRDYY 385
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 107 bits (269), Expect = 7e-25
Identities = 29/202 (14%), Positives = 67/202 (33%), Gaps = 34/202 (16%)
Query: 430 MLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGND 489
M + + ++ EK G
Sbjct: 1 MHHHHH--HSSGVDLGTENLYFQSMADVEKH-----------------------LELGKK 35
Query: 490 LFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTK 549
L + + +A + + DP N + Y RA + +G+ + ++ D + + ++ ++T
Sbjct: 36 LLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTA 95
Query: 550 ALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAESLFHA----QVSLKKSRGEEVYN 605
A L+R K K +A DF+ + + P +NE E+ ++ +S+ +
Sbjct: 96 ARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFG 155
Query: 606 MKFGGEVEEVSSLEQFRAAVSL 627
G+ + + +
Sbjct: 156 S---GDYTAA--IAFLDKILEV 172
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 82.8 bits (205), Expect = 7e-17
Identities = 33/244 (13%), Positives = 69/244 (28%), Gaps = 55/244 (22%)
Query: 422 SSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVA 481
++ +F +++ + +A G+ +A++ A DP N +
Sbjct: 14 GTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDN---YIAYYR----- 65
Query: 482 RARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQAL 541
R + A + ++ + R K G+ + + +D + L
Sbjct: 66 ----RATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVL 121
Query: 542 LIQPNYTKA---------------LLRRAASNSKLEKWADAVRDFEVLRRELPDDNEI-- 584
P+ + L +A + + A+ + + D E+
Sbjct: 122 KSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRE 181
Query: 585 --AESLFH------AQVSLKK-------------SRGEEVYNMKFGGEVEEVSSLEQFRA 623
AE A LK Y + G+ E SL + R
Sbjct: 182 LRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQL---GDHEL--SLSEVRE 236
Query: 624 AVSL 627
+ L
Sbjct: 237 CLKL 240
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 184 bits (470), Expect = 4e-51
Identities = 60/338 (17%), Positives = 116/338 (34%), Gaps = 22/338 (6%)
Query: 242 AEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEE 301
A LK GN+ +R + +A+ Y+ A+ L + F SN +A +G + + V+ +
Sbjct: 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTK 64
Query: 302 AVRLDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDA 361
A+ L P+Y + R S LG+ +A L + D + ++E++L+K
Sbjct: 65 ALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNK---- 120
Query: 362 RKVGDWKSALREGDAAIAAGADFSPQLSM---CRVEALLKLHQLEDAESSLSNIPKIEPS 418
+ + K + D A A + S Q + + E L + +
Sbjct: 121 QAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANY 180
Query: 419 TVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEV----AVLL 474
S+ + + A F A E+ + + ++ A+ L
Sbjct: 181 DESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISL 240
Query: 475 NNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSV 534
+ G F A + + + P + Y A
Sbjct: 241 EH---------TGIFKFLKNDPLGAHEDIKKAIELFPRVNS-YIYMALIMADRNDSTEYY 290
Query: 535 EDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFE 572
++AL + N + R N L+ + A +DF+
Sbjct: 291 NYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFD 328
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 145 bits (368), Expect = 2e-37
Identities = 41/311 (13%), Positives = 84/311 (27%), Gaps = 60/311 (19%)
Query: 241 DAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECE 300
A L+ G + K A KAI L PR ++ A + E +
Sbjct: 236 LAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVNSY-IYMALIMADRNDSTEYYNYFD 294
Query: 301 EAVRLDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTD 360
+A++LD N + G + L +
Sbjct: 295 KALKLDSNNSSVYYHRGQMNFILQNYDQ-------------------------------- 322
Query: 361 ARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTV 420
A ++ D A + + ++ +D E+ S + P
Sbjct: 323 ---------AGKDFDKAKELDPENIFPYI-QLACLAYRENKFDDCETLFSEAKRKFPE-- 370
Query: 421 SSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLV 480
E F A+I F+ A+ + A +++ + + + +
Sbjct: 371 ----------APEVPNF--FAEILTDKNDFDKALKQYDLAIELENKLDGI---YVGIAPL 415
Query: 481 ARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQA 540
E F EA + + DP + A + + ++ ++
Sbjct: 416 VGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEES 475
Query: 541 LLIQPNYTKAL 551
+ + L
Sbjct: 476 ADLARTMEEKL 486
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 129 bits (326), Expect = 7e-32
Identities = 48/381 (12%), Positives = 101/381 (26%), Gaps = 88/381 (23%)
Query: 225 PENANVNRNRGGICGGDAEELKRMGNELYRK--GCFGEALSMYDKAISLAPRNAAFRSNR 282
E N N ++ +E + K F E L ++ L + A +
Sbjct: 188 KELMNGLSNLYKRSPESYDK----ADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT 243
Query: 283 AAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQADP 342
A ++ ++A+ L P ++ + ++ +
Sbjct: 244 GIFKFLKNDPLGAHEDIKKAIELFPRV-NSYIYMALIMADRNDSTEYYNYF--------- 293
Query: 343 TEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQL 402
D A+ ++ S R + L
Sbjct: 294 --------------------------------DKALKLDSNNSSVYY-HRGQMNFILQNY 320
Query: 403 EDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQ 462
+ A +++P Y A + +F++ T +A +
Sbjct: 321 DQAGKDFDKAKELDPE------------NIFPY--IQLACLAYRENKFDDCETLFSEAKR 366
Query: 463 IDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAA 522
P EV N L F +A + Y + + +Y A
Sbjct: 367 KFPEAPEV---PNF---------FAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAP 414
Query: 523 CWFK---------LGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFE- 572
K + + + +A + P +A + A + E +A+ FE
Sbjct: 415 LVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEE 474
Query: 573 VLRREL-PDDNEIAESLFHAQ 592
+L E +++ A+
Sbjct: 475 SA--DLARTMEEKLQAITFAE 493
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 122 bits (308), Expect = 1e-29
Identities = 41/363 (11%), Positives = 101/363 (27%), Gaps = 51/363 (14%)
Query: 241 DAEELKRMGNELYRKGCFGEALSMYDK-AISLAPRNAAFRS--NRAAALTGLGRIGEAVK 297
++ L R + G F +A+ +++ +A+ R + ++ E
Sbjct: 72 YSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFG 131
Query: 298 ECEEAVRLDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQ------------QADPTEV 345
+ + A + + + +AD +
Sbjct: 132 DIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELM 191
Query: 346 HRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAG---ADFSPQLSM---CRVEALLKL 399
+ L + K + D + + A R + + +L++
Sbjct: 192 NGLSNLYKRSPESYD-KADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLK 250
Query: 400 HQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEK 459
+ A + ++ P +Y + A I +K
Sbjct: 251 NDPLGAHEDIKKAIELFPR-------------VNSYIY--MALIMADRNDSTEYYNYFDK 295
Query: 460 AGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCN 519
A ++D N V + RG F + + +A + + + DP N Y
Sbjct: 296 ALKLDSNNSSV---YYH---------RGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQ 343
Query: 520 RAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDF-EVLRREL 578
A ++ +++ ++A P + A + + A++ + + E
Sbjct: 344 LACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELE- 402
Query: 579 PDD 581
Sbjct: 403 NKL 405
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 108 bits (271), Expect = 6e-25
Identities = 41/361 (11%), Positives = 92/361 (25%), Gaps = 59/361 (16%)
Query: 241 DAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRS-------------NRAAALT 287
E + E D A + + + A+
Sbjct: 109 SIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFF 168
Query: 288 GLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVRLGQVENARRHL-----CLSGQQADP 342
G+ + +E+ D L + A Q
Sbjct: 169 GIFKPELTFANYDESNEADKELMNGLSNLYKR--SPESYDKADESFTKAARLFEEQLDKN 226
Query: 343 TEVHRL--QVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLH 400
E +L ++ D A + AI + + M + +
Sbjct: 227 NEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVNSYIYMA--LIMADRN 284
Query: 401 QLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKA 460
+ + K++ + S Y + R Q+ L ++ A +KA
Sbjct: 285 DSTEYYNYFDKALKLDSN------------NSSVY--YHRGQMNFILQNYDQAGKDFDKA 330
Query: 461 GQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNR 520
++DP N+ ++ +F + + E R P +
Sbjct: 331 KELDPENIFP---YIQ---------LACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFF 378
Query: 521 AACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSK---------LEKWADAVRDF 571
A ++++++ + A+ ++ + A K +E + +A
Sbjct: 379 AEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLL 438
Query: 572 E 572
E
Sbjct: 439 E 439
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 103 bits (258), Expect = 3e-23
Identities = 35/105 (33%), Positives = 61/105 (58%), Gaps = 1/105 (0%)
Query: 485 ARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQ 544
+GN F+++++ +A + Y L + V Y N +AC+ +G ++ VE S +AL ++
Sbjct: 11 DKGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELK 69
Query: 545 PNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAESLF 589
P+Y+K LLRRA++N L K+ADA+ D VL ++ E +
Sbjct: 70 PDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPML 114
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 96.0 bits (239), Expect = 5e-21
Identities = 32/252 (12%), Positives = 62/252 (24%), Gaps = 64/252 (25%)
Query: 241 DAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECE 300
++ G + + +A +DKA L P N A + +
Sbjct: 303 NSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFS 362
Query: 301 EAVRLDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQA---DPTE----VHRLQVVEK 353
EA R P +L + A + A + V +V K
Sbjct: 363 EAKRKFPEAPEVPNFFAEILTDKNDFDKALKQY----DLAIELENKLDGIYVGIAPLVGK 418
Query: 354 HLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIP 413
+ ++ A +A
Sbjct: 419 ATLLTRNPTV-ENFIEAT----------NLLE--------KAS----------------- 442
Query: 414 KIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVL 473
K++P +A AQ+++ + A+T E++ + E
Sbjct: 443 KLDPR------------SEQAK--IGLAQMKLQQEDIDEAITLFEESADLARTMEE---K 485
Query: 474 LNNVKLVARARA 485
L + A+
Sbjct: 486 LQAITFAEAAKV 497
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 50.5 bits (121), Expect = 1e-06
Identities = 6/62 (9%), Positives = 23/62 (37%), Gaps = 1/62 (1%)
Query: 511 PSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRD 570
++ ++ +F+ +++ +++ N AL ++ + +A + V
Sbjct: 3 DKYALALKDKGNQFFRNKKYDDAIKYYNWALELKEDPV-FYSNLSACYVSVGDLKKVVEM 61
Query: 571 FE 572
Sbjct: 62 ST 63
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 183 bits (465), Expect = 4e-50
Identities = 59/340 (17%), Positives = 112/340 (32%), Gaps = 39/340 (11%)
Query: 242 AEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEE 301
A +LK GN + F EA+ Y AI L P F SN +A G + + ++ +
Sbjct: 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTK 84
Query: 302 AVRLDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDA 361
A+ + P++ +A R S LG +A L + D ++E++L+K A
Sbjct: 85 ALEIKPDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNK--QA 142
Query: 362 RKVGDWKSALREGDAAIA---------AGADFSPQLSMCRVEALLKLHQLEDAESSLSNI 412
KV + + EG + F L + ++ + A + LS+
Sbjct: 143 MKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEV---SSVNTSSNYDTAYALLSDA 199
Query: 413 PKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAV 472
+ S ++ + + + + ++A +
Sbjct: 200 LQRLYS------------ATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALA-- 245
Query: 473 LLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWER 532
L G F +A E + P+ + Y A +
Sbjct: 246 -LCY---------TGIFHFLKNNLLDAQVLLQESINLHPTPNS-YIFLALTLADKENSQE 294
Query: 533 SVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFE 572
+ +A+ + P Y R L+ + +A DF+
Sbjct: 295 FFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQ 334
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 149 bits (378), Expect = 2e-38
Identities = 54/357 (15%), Positives = 118/357 (33%), Gaps = 69/357 (19%)
Query: 241 DAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECE 300
A L G + K +A + ++I+L P ++ A L E K +
Sbjct: 242 AALALCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSY-IFLALTLADKENSQEFFKFFQ 300
Query: 301 EAVRLDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTD 360
+AV L+P Y + G + L
Sbjct: 301 KAVDLNPEYPPTYYHRGQMYFILQ------------------------------------ 324
Query: 361 ARKVGDWKSALREGDAAIAAGADFS-PQLSMCRVEALLKLHQLEDAESSLSNIPKIEPST 419
D+K+A + A + + P + + L K + ++E+ + P+
Sbjct: 325 -----DYKNAKEDFQKAQSLNPENVYPYIQLA--CLLYKQGKFTESEAFFNETKLKFPT- 376
Query: 420 VSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEV----AVLLN 475
L E TF A+I G F+ A+ + A +++ ++ L+
Sbjct: 377 -----------LPEVPTF--FAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIG 423
Query: 476 NVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVE 535
++AR ++ E+F A + + DP + A ++ + + ++E
Sbjct: 424 KATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIE 483
Query: 536 DSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAESLFHAQ 592
+ ++ + L +A + ++ K +R + E+ + + A+
Sbjct: 484 LFEDSAILARTMDEKL--QATTFAEAAKIQKRLRADP----IISAKMELTLARYRAK 534
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 116 bits (292), Expect = 2e-27
Identities = 45/144 (31%), Positives = 68/144 (47%), Gaps = 10/144 (6%)
Query: 448 GRFENAVTAAEKAGQIDPRNVEV-AVLLNNVKLVARARARGNDLFKSERFTEACQAYGEG 506
G N + + P + AV L N RGN F ++ F EA + Y
Sbjct: 1 GSHMNGEPDIAQLKGLSPSQRQAYAVQLKN---------RGNHFFTAKNFNEAIKYYQYA 51
Query: 507 LRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWAD 566
+ DP+ V Y N +AC+ G E+ +E + +AL I+P+++KALLRRA++N L + D
Sbjct: 52 IELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTD 111
Query: 567 AVRDFEVLRRELPDDNEIAESLFH 590
A+ D VL D E +
Sbjct: 112 AMFDLSVLSLNGDFDGASIEPMLE 135
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 105 bits (263), Expect = 8e-24
Identities = 45/307 (14%), Positives = 86/307 (28%), Gaps = 63/307 (20%)
Query: 241 DAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECE 300
+ L K E + KA+ L P +R L A ++ +
Sbjct: 275 TPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQ 334
Query: 301 EAVRLDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQA---DPTEVHRLQVVEKHLSK 357
+A L+P + +L LL + G+ + + PT + E
Sbjct: 335 KAQSLNPENVYPYIQLACLLYKQGKFTESEAFF----NETKLKFPT------LPEVPTFF 384
Query: 358 CTDARKVGDWKSALREGDAAI---------------AAGADFSPQLSMCRVEALLKLHQL 402
GD+ +A+++ D A G + L +
Sbjct: 385 AEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKF 444
Query: 403 EDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQ 462
A L+ +++P +A AQ+++ + + + A+ E +
Sbjct: 445 NAAIKLLTKACELDPR------------SEQAK--IGLAQLKLQMEKIDEAIELFEDSAI 490
Query: 463 IDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAA 522
+ E L A+ + + LR DP S A
Sbjct: 491 LARTMDE---KLQATTFAEAAKIQ------------------KRLRADPIISAKMELTLA 529
Query: 523 CWFKLGQ 529
+ G
Sbjct: 530 RYRAKGM 536
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 101 bits (254), Expect = 1e-22
Identities = 45/384 (11%), Positives = 90/384 (23%), Gaps = 79/384 (20%)
Query: 250 NELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALT--GLGRIGEAVKECEEAVRLDP 307
+ + + A ++ A+ A L + L
Sbjct: 181 SSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRE 240
Query: 308 NYWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDW 367
N A G +
Sbjct: 241 NAALALCYTGIFHFLKN-----------------------------------------NL 259
Query: 368 KSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRF 427
A +I +P + L ++ + P
Sbjct: 260 LDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE--------- 308
Query: 428 FGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARG 487
Y + R Q+ L ++NA +KA ++P NV
Sbjct: 309 ---YPPTY--YHRGQMYFILQDYKNAKEDFQKAQSLNPENVYP---YIQ---------LA 351
Query: 488 NDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNY 547
L+K +FTE+ + E P+ + A G ++ +++ + A ++
Sbjct: 352 CLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQ 411
Query: 548 TKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAESLFHAQVSLKKSRGEEVYNM- 606
K + K A E + A L L + +
Sbjct: 412 EKIHVGIGPLIGKATILARQSSQDPTQLDE--EKFNAAIKLLTKACELDPRSEQAKIGLA 469
Query: 607 ---KFGGEVEEVSSLEQFRAAVSL 627
+++E ++E F + L
Sbjct: 470 QLKLQMEKIDE--AIELFEDSAIL 491
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 76.7 bits (189), Expect = 9e-15
Identities = 16/107 (14%), Positives = 33/107 (30%), Gaps = 4/107 (3%)
Query: 225 PENANVNRNRGGICG--GDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNR 282
++ G + G + F A+ + KA L PR+ +
Sbjct: 409 EVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGL 468
Query: 283 AAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVRLGQVENA 329
A + +I EA++ E++ L Q +++
Sbjct: 469 AQLKLQMEKIDEAIELFEDSAILARTMDEKLQATT--FAEAAKIQKR 513
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 49.7 bits (119), Expect = 2e-06
Identities = 9/80 (11%), Positives = 23/80 (28%), Gaps = 9/80 (11%)
Query: 247 RMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLD 306
+ + EA+ +++ + LA +I ++ +R D
Sbjct: 467 GLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQATT--FAEAAKI-------QKRLRAD 517
Query: 307 PNYWRAHQRLGSLLVRLGQV 326
P + + G +
Sbjct: 518 PIISAKMELTLARYRAKGML 537
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 164 bits (417), Expect = 7e-45
Identities = 68/378 (17%), Positives = 120/378 (31%), Gaps = 66/378 (17%)
Query: 221 LAVGPENANVNRNRGGICG--------------------GDAEELKRMGNELYRKGCFGE 260
P+N V I AE +GN +G E
Sbjct: 26 WRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQE 85
Query: 261 ALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLL 320
A+ Y A+ L P N AAAL G + AV+ A++ +P+ + LG+LL
Sbjct: 86 AIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLL 145
Query: 321 VRLGQVENARRHLCLSGQQA---DPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAA 377
LG++E A+ +A P + G+ A+ + A
Sbjct: 146 KALGRLEEAKACY----LKAIETQP------NFAVAWSNLGCVFNAQGEIWLAIHHFEKA 195
Query: 378 IAAGADFSPQLSMC---RVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEA 434
+ P L + + A ++ + P+ +
Sbjct: 196 VT----LDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN------------HAVV 239
Query: 435 YTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSE 494
+ A + G + A+ +A ++ P + N N L +
Sbjct: 240 H--GNLACVYYEQGLIDLAIDTYRRAIELQPHFPDA---YCN---------LANALKEKG 285
Query: 495 RFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRR 554
EA Y LR P+++ N A + G E +V +AL + P + A
Sbjct: 286 SVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNL 345
Query: 555 AASNSKLEKWADAVRDFE 572
A+ + K +A+ ++
Sbjct: 346 ASVLQQQGKLQEALMHYK 363
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 155 bits (395), Expect = 8e-42
Identities = 60/328 (18%), Positives = 124/328 (37%), Gaps = 40/328 (12%)
Query: 248 MGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDP 307
+ + Y+ G F A + P N ++ R+ + A++ +P
Sbjct: 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP 64
Query: 308 NYWRAHQRLGSLLVRLGQVENARRHLCLSGQQA---DPTEVHRLQVVEKHLSKCTDARKV 364
A+ LG++ GQ++ A H + A P ++ +++
Sbjct: 65 LLAEAYSNLGNVYKERGQLQEAIEHY----RHALRLKP------DFIDGYINLAAALVAA 114
Query: 365 GDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQ 424
GD + A++ +A+ D S L L +LE+A++ + +P+
Sbjct: 115 GDMEGAVQAYVSALQYNPDLYCVRSD-LGNLLKALGRLEEAKACYLKAIETQPN------ 167
Query: 425 TRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARAR 484
+ A+ + A G A+ EKA +DP ++ N
Sbjct: 168 ------FAVAW--SNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDA---YIN-------- 208
Query: 485 ARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQ 544
GN L ++ F A AY L P+++V++ N A +++ G + +++ +A+ +Q
Sbjct: 209 -LGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ 267
Query: 545 PNYTKALLRRAASNSKLEKWADAVRDFE 572
P++ A A + + A+A +
Sbjct: 268 PHFPDAYCNLANALKEKGSVAEAEDCYN 295
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 146 bits (372), Expect = 1e-38
Identities = 53/318 (16%), Positives = 109/318 (34%), Gaps = 40/318 (12%)
Query: 248 MGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDP 307
+ L G A+ Y A+ P RS+ L LGR+ EA +A+ P
Sbjct: 107 LAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQP 166
Query: 308 NYWRAHQRLGSLLVRLGQVENARRHLCLSGQQA---DPTEVHRLQVVEKHLSKCTDARKV 364
N+ A LG + G++ A H ++A DP ++ +++ ++
Sbjct: 167 NFAVAWSNLGCVFNAQGEIWLAIHHF----EKAVTLDP------NFLDAYINLGNVLKEA 216
Query: 365 GDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQ 424
+ A+ A++ + + + ++ A + +++P
Sbjct: 217 RIFDRAVAAYLRALSLSPNH-AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH------ 269
Query: 425 TRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARAR 484
+AY A G A A ++ P + + LNN
Sbjct: 270 ------FPDAY--CNLANALKEKGSVAEAEDCYNTALRLCPTHADS---LNN-------- 310
Query: 485 ARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQ 544
N + EA + Y + L P + + N A+ + G+ + ++ +A+ I
Sbjct: 311 -LANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS 369
Query: 545 PNYTKALLRRAASNSKLE 562
P + A + +++
Sbjct: 370 PTFADAYSNMGNTLKEMQ 387
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 119 bits (302), Expect = 2e-29
Identities = 44/292 (15%), Positives = 84/292 (28%), Gaps = 68/292 (23%)
Query: 281 NRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQA 340
A G A + C + R +P+ L S+ + +++ +
Sbjct: 4 ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFS------- 56
Query: 341 DPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLH 400
AI + S +
Sbjct: 57 ----------------------------------TLAIKQNPLLAEAYS-NLGNVYKERG 81
Query: 401 QLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKA 460
QL++A + +++P + Y A +A G E AV A A
Sbjct: 82 QLQEAIEHYRHALRLKPD------------FIDGY--INLAAALVAAGDMEGAVQAYVSA 127
Query: 461 GQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNR 520
Q +P V ++ GN L R EA Y + + P+ +V + N
Sbjct: 128 LQYNPDLYCV---RSD---------LGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNL 175
Query: 521 AACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFE 572
+ G+ ++ +A+ + PN+ A + + + AV +
Sbjct: 176 GCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYL 227
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 84.9 bits (211), Expect = 9e-18
Identities = 26/84 (30%), Positives = 45/84 (53%)
Query: 241 DAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECE 300
A+ L + N +G EA+ +Y KA+ + P AA SN A+ L G++ EA+ +
Sbjct: 304 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYK 363
Query: 301 EAVRLDPNYWRAHQRLGSLLVRLG 324
EA+R+ P + A+ +G+ L +
Sbjct: 364 EAIRISPTFADAYSNMGNTLKEMQ 387
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 48.3 bits (116), Expect = 5e-06
Identities = 8/56 (14%), Positives = 20/56 (35%)
Query: 517 YCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFE 572
A ++ G +E + Q +P+ T LL ++ + + + +
Sbjct: 2 PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFST 57
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 153 bits (389), Expect = 2e-42
Identities = 52/322 (16%), Positives = 91/322 (28%), Gaps = 70/322 (21%)
Query: 242 AEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEE 301
A++ K GN+ Y+ F EA+ Y+KA L +NRAAA G A+ +
Sbjct: 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYL-NNRAAAEYEKGEYETAISTLND 63
Query: 302 AVRLDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDA 361
AV ++ + R+G +
Sbjct: 64 AVEQGREMRADYKVISKSFARIGNAYHK-------------------------------- 91
Query: 362 RKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVS 421
+GD K + ++ + L KL E + P
Sbjct: 92 --LGDLKKTIEYYQKSLTE---------HRTADILTKLRNAEKELKKAEAEAYVNPE--- 137
Query: 422 SSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVA 481
+E + + + NAV A + + P + A +N
Sbjct: 138 ---------KAEEA--RLEGKEYFTKSDWPNAVKAYTEMIKRAPED---ARGYSN----- 178
Query: 482 RARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQAL 541
R L K F EA + + DP+ Y +A + ++ ++E + A
Sbjct: 179 ----RAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAAR 234
Query: 542 LIQPNYTKALLRRAASNSKLEK 563
R +
Sbjct: 235 TKDAEVNNGSSAREIDQLYYKA 256
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 104 bits (263), Expect = 2e-25
Identities = 37/284 (13%), Positives = 71/284 (25%), Gaps = 75/284 (26%)
Query: 241 DAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECE 300
D L Y KG + A+S + A+ A + + +G + + +
Sbjct: 37 DITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLK 96
Query: 301 EAVRLDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQA---DPTEVHRLQVVEKHLSK 357
+ + H R +L +L E + + +P + E+ +
Sbjct: 97 KTIEYYQKSLTEH-RTADILTKLRNAEKELKKA----EAEAYVNP------EKAEEARLE 145
Query: 358 CTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEP 417
+ DW +A+ ++ E + K P
Sbjct: 146 GKEYFTKSDWPNAV----------KAYT--------EMI-----------------KRAP 170
Query: 418 STVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNV 477
+ Y RA L F A+ KA + DP V
Sbjct: 171 E------------DARGY--SNRAAALAKLMSFPEAIADCNKAIEKDPNFVRA---YIR- 212
Query: 478 KLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRA 521
+ + + A + D + R
Sbjct: 213 --------KATAQIAVKEYASALETLDAARTKDAEVNNGSSARE 248
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 79.1 bits (196), Expect = 1e-16
Identities = 17/87 (19%), Positives = 36/87 (41%), Gaps = 1/87 (1%)
Query: 486 RGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQP 545
GN +K+ +F EA + Y + + NRAA ++ G++E ++ N A+
Sbjct: 11 EGNKFYKARQFDEAIEHYNKAWELHK-DITYLNNRAAAEYEKGEYETAISTLNDAVEQGR 69
Query: 546 NYTKALLRRAASNSKLEKWADAVRDFE 572
+ S +++ + D +
Sbjct: 70 EMRADYKVISKSFARIGNAYHKLGDLK 96
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 77.6 bits (192), Expect = 4e-16
Identities = 17/142 (11%), Positives = 40/142 (28%), Gaps = 16/142 (11%)
Query: 431 LSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDL 490
+++ +F+ A+ KA ++ LNN R
Sbjct: 4 MADKE--KAEGNKFYKARQFDEAIEHYNKAWELHKD----ITYLNN---------RAAAE 48
Query: 491 FKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKA 550
++ + A + + Y + + ++G + D + +
Sbjct: 49 YEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKS-LT 107
Query: 551 LLRRAASNSKLEKWADAVRDFE 572
R A +KL ++ E
Sbjct: 108 EHRTADILTKLRNAEKELKKAE 129
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 73.7 bits (182), Expect = 1e-14
Identities = 18/128 (14%), Positives = 31/128 (24%), Gaps = 19/128 (14%)
Query: 221 LAVGPENANVNRNRGGICG--GDAEE-----------------LKRMGNELYRKGCFGEA 261
+ G E + G+A R + L + +
Sbjct: 65 VEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKE 124
Query: 262 LSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLV 321
L + + P A AVK E ++ P R + + L
Sbjct: 125 LKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALA 184
Query: 322 RLGQVENA 329
+L A
Sbjct: 185 KLMSFPEA 192
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 72.2 bits (178), Expect = 3e-14
Identities = 21/113 (18%), Positives = 31/113 (27%), Gaps = 20/113 (17%)
Query: 225 PENANVNRNRGGICG--GDAEE--------LKR----------MGNELYRKGCFGEALSM 264
PE A R G D +KR L + F EA++
Sbjct: 136 PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIAD 195
Query: 265 YDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLG 317
+KAI P +A A + A++ + A D
Sbjct: 196 CNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSARE 248
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 50.6 bits (122), Expect = 6e-07
Identities = 17/82 (20%), Positives = 35/82 (42%), Gaps = 5/82 (6%)
Query: 511 PSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRD 570
S + ++K Q++ ++E N+A + + T L RAA+ + ++ A+
Sbjct: 2 GSMADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDIT-YLNNRAAAEYEKGEYETAIST 60
Query: 571 FE---VLRRELPDD-NEIAESL 588
RE+ D I++S
Sbjct: 61 LNDAVEQGREMRADYKVISKSF 82
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 159 bits (404), Expect = 3e-42
Identities = 43/349 (12%), Positives = 81/349 (23%), Gaps = 42/349 (12%)
Query: 241 DAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECE 300
+ G L + +A L P+ ++ L + +
Sbjct: 173 QVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLC 232
Query: 301 EAVRLDPNYWRAHQRLGSLLVRLGQVENA----RRHLCLSGQQADPTEVHRLQVVEKHLS 356
+A L P A G L V+ + L+ QQ S
Sbjct: 233 QAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQV-----------VAIAS 281
Query: 357 KCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIE 416
+ + + L A ++ L ++ L +
Sbjct: 282 NSGGKQALETVQRLLPVLCQAHGLTPQQVVAIA-SNGGGKQALETVQRLLPVLCQAHGLT 340
Query: 417 PSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNN 476
P A + AL + + +A + P V + +
Sbjct: 341 PQ------------QVVAIAS--HDGGKQALETVQRLLPVLCQAHGLTPEQVVA---IAS 383
Query: 477 VKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVED 536
G E + P V + L +R +
Sbjct: 384 ---------NGGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQRLLPV 434
Query: 537 SNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIA 585
QA + P A+ LE + + L +D+ +A
Sbjct: 435 LCQAHGLTPQQVVAIASNGGGRPALESIVAQLSRPDPALAALTNDHLVA 483
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 152 bits (385), Expect = 1e-39
Identities = 40/337 (11%), Positives = 74/337 (21%), Gaps = 44/337 (13%)
Query: 241 DAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECE 300
+ L + +A L P+ ++ L + +
Sbjct: 71 QVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLC 130
Query: 301 EAVRLDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQV--VEKHLSKC 358
+A L P A L V+ + H L V S
Sbjct: 131 QAHGLTPEQVVAIASHDGGKQALETVQAL---------LPVLCQAHGLTPEQVVAIASNG 181
Query: 359 TDARKVGDWKSALREGDAAIAAGADFSPQLSM---CRVEALLKLHQLEDAESSLSNIPKI 415
+ + + L A +PQ + L ++ L +
Sbjct: 182 GGKQALETVQRLLPVLCQAHG----LTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGL 237
Query: 416 EPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLN 475
P V A + AL + + +A + P+ V +
Sbjct: 238 TPQQV------------VAI--ASNGGGKQALETVQRLLPVLCQAHGLTPQQVVA---IA 280
Query: 476 NVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVE 535
+ E + P V + L +R +
Sbjct: 281 S---------NSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLP 331
Query: 536 DSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFE 572
QA + P A+ LE +
Sbjct: 332 VLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLC 368
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 151 bits (384), Expect = 1e-39
Identities = 39/336 (11%), Positives = 74/336 (22%), Gaps = 42/336 (12%)
Query: 241 DAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECE 300
+ L + +A L P ++ L + +
Sbjct: 105 QVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLC 164
Query: 301 EAVRLDPNYWRAHQRLGSLLVRLGQVENA----RRHLCLSGQQADPTEVHRLQVVEKHLS 356
+A L P A G L V+ + L+ QQ S
Sbjct: 165 QAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQV-----------VAIAS 213
Query: 357 KCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIE 416
+ + + L A ++ L ++ L +
Sbjct: 214 NGGGKQALETVQRLLPVLCQAHGLTPQQVVAIAS-NGGGKQALETVQRLLPVLCQAHGLT 272
Query: 417 PSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNN 476
P A + + AL + + +A + P+ V + +
Sbjct: 273 PQ------------QVVAI--ASNSGGKQALETVQRLLPVLCQAHGLTPQQVVA---IAS 315
Query: 477 VKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVED 536
G E + P V + L +R +
Sbjct: 316 ---------NGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPV 366
Query: 537 SNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFE 572
QA + P A+ LE +
Sbjct: 367 LCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLC 402
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 151 bits (384), Expect = 2e-39
Identities = 45/393 (11%), Positives = 84/393 (21%), Gaps = 62/393 (15%)
Query: 241 DAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECE 300
+ L + +A L P ++ L + +
Sbjct: 139 QVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLC 198
Query: 301 EAVRLDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRL--QVVEKHLSKC 358
+A L P A G L V+ + H L Q V S
Sbjct: 199 QAHGLTPQQVVAIASNGGGKQALETVQRL---------LPVLCQAHGLTPQQVVAIASNG 249
Query: 359 TDARKVGDWKSALREGDAAIAAGADFSPQLSM---CRVEALLKLHQLEDAESSLSNIPKI 415
+ + + L A +PQ + L ++ L +
Sbjct: 250 GGKQALETVQRLLPVLCQAHG----LTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGL 305
Query: 416 EPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLN 475
P V A + AL + + +A + P+ V +
Sbjct: 306 TPQQV------------VAI--ASNGGGKQALETVQRLLPVLCQAHGLTPQQVVA---IA 348
Query: 476 NVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVE 535
+ E + P V + L +R +
Sbjct: 349 S---------HDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLP 399
Query: 536 DSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFE-VLRRELPDDNEIAESLFHAQVS 594
QA + P A+ LE + P ++
Sbjct: 400 VLCQAHGLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLT-PQQ---VVAIASNGGG 455
Query: 595 LKKSRGEEVYNMKFGGEVEEVSSLEQFRAAVSL 627
+ L + A++
Sbjct: 456 RPAL-----------ESIVA--QLSRPDPALAA 475
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 142 bits (361), Expect = 2e-36
Identities = 38/337 (11%), Positives = 81/337 (24%), Gaps = 42/337 (12%)
Query: 240 GDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKEC 299
G ++ + G + ++ ++L P ++ L + +
Sbjct: 36 GQLLKIAKRGGVTAVEAVHAWRNALTGAPLNLTPEQVVAIASHDGGKQALETVQRLLPVL 95
Query: 300 EEAVRLDPNYWRAHQRLGSLLVRLGQVENA----RRHLCLSGQQADPTEVHRLQVVEKHL 355
+A L P A L V+ + L+ +Q
Sbjct: 96 CQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVV-----------AIA 144
Query: 356 SKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKI 415
S + + ++ L A + ++ L ++ L +
Sbjct: 145 SHDGGKQALETVQALLPVLCQAHGLTPEQVVAIAS-NGGGKQALETVQRLLPVLCQAHGL 203
Query: 416 EPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLN 475
P V A + AL + + +A + P+ V +
Sbjct: 204 TPQQV------------VAI--ASNGGGKQALETVQRLLPVLCQAHGLTPQQVVA---IA 246
Query: 476 NVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVE 535
+ G E + P V + + L +R +
Sbjct: 247 S---------NGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLP 297
Query: 536 DSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFE 572
QA + P A+ LE +
Sbjct: 298 VLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLC 334
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 124 bits (312), Expect = 4e-30
Identities = 41/336 (12%), Positives = 74/336 (22%), Gaps = 52/336 (15%)
Query: 246 KRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEA--- 302
+ + A + + L A G EAV A
Sbjct: 8 HQWSGARALEALLTVAGELRGPPLQLDTGQLL-----KIAKRGGVTAVEAVHAWRNALTG 62
Query: 303 --VRLDPNYWRAHQRLGSLLVRLGQVENA----RRHLCLSGQQADPTEVHRLQVVEKHLS 356
+ L P A L V+ + L+ QQ S
Sbjct: 63 APLNLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQV-----------VAIAS 111
Query: 357 KCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIE 416
+ + + L A + ++ L ++ L +
Sbjct: 112 HDGGKQALETVQRLLPVLCQAHGLTPEQVVAIA-SHDGGKQALETVQALLPVLCQAHGLT 170
Query: 417 PSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNN 476
P V A + AL + + +A + P+ V + +
Sbjct: 171 PEQV------------VAI--ASNGGGKQALETVQRLLPVLCQAHGLTPQQ---VVAIAS 213
Query: 477 VKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVED 536
G E + P V + L +R +
Sbjct: 214 ---------NGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPV 264
Query: 537 SNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFE 572
QA + P A+ + LE +
Sbjct: 265 LCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLC 300
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 101 bits (254), Expect = 8e-23
Identities = 38/302 (12%), Positives = 72/302 (23%), Gaps = 36/302 (11%)
Query: 271 LAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVRLGQVENAR 330
L + + + A AL L + ++ ++LD + G + V R
Sbjct: 1 LEHHHHHHQWSGARALEALLTVAGELRG--PPLQLDTGQLLKIAKRGGVTAVE-AVHAWR 57
Query: 331 RHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSM 390
L + P + V S + + + L A ++
Sbjct: 58 NALTGAPLNLTP------EQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIA- 110
Query: 391 CRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRF 450
L ++ L + P V A + AL
Sbjct: 111 SHDGGKQALETVQRLLPVLCQAHGLTPEQV------------VAI--ASHDGGKQALETV 156
Query: 451 ENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFD 510
+ + +A + P V + + G E +
Sbjct: 157 QALLPVLCQAHGLTPEQVVA---IAS---------NGGGKQALETVQRLLPVLCQAHGLT 204
Query: 511 PSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRD 570
P V + L +R + QA + P A+ LE +
Sbjct: 205 PQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPV 264
Query: 571 FE 572
Sbjct: 265 LC 266
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 43.2 bits (102), Expect = 2e-04
Identities = 15/145 (10%), Positives = 28/145 (19%), Gaps = 16/145 (11%)
Query: 483 ARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALL 542
T A + G L+ D + R + L
Sbjct: 7 HHQWSGARALEALLTVAGELRGPPLQLDTGQLLKIAKRGGVTAVEAVHAWRNALTGAPLN 66
Query: 543 IQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAESLFHAQVSLKKSRGEE 602
+ P A+ LE + + + ++ +
Sbjct: 67 LTPEQVVAIASHDGGKQALETVQRLLPVL---CQAHGLTPQQVVAIASHDGGKQAL---- 119
Query: 603 VYNMKFGGEVEEVSSLEQFRAAVSL 627
V+ L A L
Sbjct: 120 -------ETVQR--LLPVLCQAHGL 135
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126 | Back alignment and structure |
|---|
Score = 141 bits (359), Expect = 6e-40
Identities = 34/113 (30%), Positives = 63/113 (55%)
Query: 476 NVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVE 535
N +L + +GN+ FK + A + Y E ++ DP N++LY NRAAC KL +++R+++
Sbjct: 9 NPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALD 68
Query: 536 DSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAESL 588
D + + + + K +R+AA + +W+ A R +E + P + E E +
Sbjct: 69 DCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGV 121
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126 | Back alignment and structure |
|---|
Score = 104 bits (261), Expect = 1e-26
Identities = 32/90 (35%), Positives = 51/90 (56%)
Query: 242 AEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEE 301
A+E K GNE ++KG + A+ Y++A+ P NA SNRAA LT L A+ +C+
Sbjct: 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDT 72
Query: 302 AVRLDPNYWRAHQRLGSLLVRLGQVENARR 331
+RLD + + + R + LV + + A+R
Sbjct: 73 CIRLDSKFIKGYIRKAACLVAMREWSKAQR 102
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126 | Back alignment and structure |
|---|
Score = 43.7 bits (104), Expect = 2e-05
Identities = 26/126 (20%), Positives = 51/126 (40%), Gaps = 29/126 (23%)
Query: 360 DARKVGDWKSALREGDAAIAAGADFSPQLSMC---RVEALLKLHQ----LEDAESSLSNI 412
+ K GD+ +A+R + A+ P+ ++ R L KL + L+D ++ +
Sbjct: 22 EYFKKGDYPTAMRHYNEAV----KRDPENAILYSNRAACLTKLMEFQRALDDCDTCI--- 74
Query: 413 PKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAV 472
+++ + + Y +A +A+ + A A E A Q+DP N E
Sbjct: 75 -RLDSKFI------------KGY--IRKAACLVAMREWSKAQRAYEDALQVDPSNEEARE 119
Query: 473 LLNNVK 478
+ N
Sbjct: 120 GVRNCL 125
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148 | Back alignment and structure |
|---|
Score = 138 bits (350), Expect = 2e-38
Identities = 37/139 (26%), Positives = 61/139 (43%), Gaps = 3/139 (2%)
Query: 453 AVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPS 512
+ + P E V + R GN+LFK + A AY + L D +
Sbjct: 1 GSSGSSGMTVSGPGTPEPRPATPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDAT 60
Query: 513 ---NSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVR 569
+VL+ NRAAC KL ++++ ++++A+ KAL RR+ + KL + AV
Sbjct: 61 PQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVL 120
Query: 570 DFEVLRRELPDDNEIAESL 588
D + P + E+L
Sbjct: 121 DLQRCVSLEPKNKVFQEAL 139
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148 | Back alignment and structure |
|---|
Score = 97.0 bits (242), Expect = 8e-24
Identities = 35/125 (28%), Positives = 53/125 (42%), Gaps = 8/125 (6%)
Query: 210 GSATSVKSGGSLAVGPENANVNRNRGGICGGDAEELKRMGNELYRKGCFGEALSMYDKAI 269
GS+ S S PE E+L++ GNEL++ G +G AL+ Y +A+
Sbjct: 1 GSSGSSGMTVSGPGTPEPRPATPGAS-----SVEQLRKEGNELFKCGDYGGALAAYTQAL 55
Query: 270 SLAPR---NAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVRLGQV 326
L A NRAA L +A E +A+ D +A R L +LG++
Sbjct: 56 GLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRL 115
Query: 327 ENARR 331
+ A
Sbjct: 116 DQAVL 120
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 1e-05
Identities = 25/123 (20%), Positives = 44/123 (35%), Gaps = 26/123 (21%)
Query: 363 KVGDWKSALREGDAAIAAGADFSPQLSMC---RVEALLKLHQ----LEDAESSLSNIPKI 415
K GD+ AL A+ A ++ R LKL +A ++ +
Sbjct: 40 KCGDYGGALAAYTQALGLDAT-PQDQAVLHRNRAACHLKLEDYDKAETEASKAI----EK 94
Query: 416 EPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLN 475
+ V +A + R+Q LGR + AV ++ ++P+N L
Sbjct: 95 DGGDV------------KAL--YRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALR 140
Query: 476 NVK 478
N+
Sbjct: 141 NIS 143
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118 | Back alignment and structure |
|---|
Score = 133 bits (337), Expect = 6e-37
Identities = 31/116 (26%), Positives = 63/116 (54%)
Query: 477 VKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVED 536
++ V + +GN +A Q Y E ++ DP N VLY NR+A + K G ++++ ED
Sbjct: 1 MEQVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYED 60
Query: 537 SNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAESLFHAQ 592
+ + ++P++ K R+AA+ L ++ +A R +E + ++ ++ E L + +
Sbjct: 61 GCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118 | Back alignment and structure |
|---|
Score = 105 bits (265), Expect = 3e-27
Identities = 30/90 (33%), Positives = 45/90 (50%)
Query: 242 AEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEE 301
ELK GN+ G +AL Y +AI L P N SNR+AA G +A ++ +
Sbjct: 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCK 63
Query: 302 AVRLDPNYWRAHQRLGSLLVRLGQVENARR 331
V L P++ + + R + L L + E A+R
Sbjct: 64 TVDLKPDWGKGYSRKAAALEFLNRFEEAKR 93
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118 | Back alignment and structure |
|---|
Score = 42.6 bits (101), Expect = 4e-05
Identities = 24/123 (19%), Positives = 40/123 (32%), Gaps = 29/123 (23%)
Query: 363 KVGDWKSALREGDAAIAAGADFSPQLSMC---RVEALLKLHQ----LEDAESSLSNIPKI 415
VG+ AL+ AI P + R A K ED ++ +
Sbjct: 16 SVGNIDDALQCYSEAI----KLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTV----DL 67
Query: 416 EPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLN 475
+P + Y +A L RFE A E+ + + N ++ L
Sbjct: 68 KPDWG------------KGY--SRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQ 113
Query: 476 NVK 478
N++
Sbjct: 114 NME 116
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 130 bits (329), Expect = 1e-35
Identities = 40/118 (33%), Positives = 67/118 (56%), Gaps = 2/118 (1%)
Query: 482 RARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQAL 541
R + GN+ K E F A YG+ + +P+N+V +CNRAA + KLG + +V+D +A+
Sbjct: 14 RLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAI 73
Query: 542 LIQPNYTKALLRRAASNSKLEKWADAVRDFE-VLRRELPDDNEIAESLFHAQVSLKKS 598
I P Y+KA R + S L K +AV ++ L + PD+ +L A++ L+++
Sbjct: 74 CIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLREA 130
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 104 bits (263), Expect = 7e-27
Identities = 40/108 (37%), Positives = 55/108 (50%), Gaps = 7/108 (6%)
Query: 224 GPENANVNRNRGGICGGDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRA 283
GP + + +AE LK GNE + F A+ Y KAI L P NA + NRA
Sbjct: 1 GPLGSEEDSA-------EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRA 53
Query: 284 AALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVRLGQVENARR 331
AA + LG AV++CE A+ +DP Y +A+ R+G L L + A
Sbjct: 54 AAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVA 101
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 39.9 bits (94), Expect = 4e-04
Identities = 26/126 (20%), Positives = 49/126 (38%), Gaps = 29/126 (23%)
Query: 360 DARKVGDWKSALREGDAAIAAGADFSPQLSMC---RVEALLKLHQ----LEDAESSLSNI 412
+ KV ++++A+ AI + +P ++ R A KL ++D E ++
Sbjct: 21 EQMKVENFEAAVHFYGKAI----ELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAI--- 73
Query: 413 PKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAV 472
I+P+ S+AY +L + AV +KA ++DP N
Sbjct: 74 -CIDPA------------YSKAY--GRMGLALSSLNKHVEAVAYYKKALELDPDNETYKS 118
Query: 473 LLNNVK 478
L +
Sbjct: 119 NLKIAE 124
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133 | Back alignment and structure |
|---|
Score = 130 bits (328), Expect = 1e-35
Identities = 27/141 (19%), Positives = 65/141 (46%), Gaps = 14/141 (9%)
Query: 457 AEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVL 516
++P + +GN+ F+ + +A + Y E ++ +P ++ L
Sbjct: 5 HHHHSHMNPDLAL------------MVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKL 52
Query: 517 YCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFE-VLR 575
Y NRAAC+ KL +++ +++D + + ++P + K R+AA+ ++ + A+ ++ L
Sbjct: 53 YSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALD 112
Query: 576 RELPDDNEIAESLFHAQVSLK 596
+ E A+ ++
Sbjct: 113 LD-SSCKEAADGYQRCMMAQY 132
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133 | Back alignment and structure |
|---|
Score = 105 bits (265), Expect = 5e-27
Identities = 30/90 (33%), Positives = 49/90 (54%)
Query: 242 AEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEE 301
A +K GNE ++KG + +A+ Y +AI P++A SNRAA T L A+K+CEE
Sbjct: 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEE 75
Query: 302 AVRLDPNYWRAHQRLGSLLVRLGQVENARR 331
++L+P + + + R + L + A
Sbjct: 76 CIQLEPTFIKGYTRKAAALEAMKDYTKAMD 105
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 2e-04
Identities = 23/126 (18%), Positives = 45/126 (35%), Gaps = 29/126 (23%)
Query: 360 DARKVGDWKSALREGDAAIAAGADFSPQLSMC---RVEALLKLHQ----LEDAESSLSNI 412
+ + GD+ A++ AI +P+ + R KL + L+D E +
Sbjct: 25 ECFQKGDYPQAMKHYTEAI----KRNPKDAKLYSNRAACYTKLLEFQLALKDCEECI--- 77
Query: 413 PKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAV 472
++EP+ + + Y +A A+ + A+ +KA +D E A
Sbjct: 78 -QLEPTFI------------KGY--TRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAAD 122
Query: 473 LLNNVK 478
Sbjct: 123 GYQRCM 128
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166 | Back alignment and structure |
|---|
Score = 130 bits (328), Expect = 3e-35
Identities = 33/122 (27%), Positives = 63/122 (51%), Gaps = 2/122 (1%)
Query: 482 RARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQAL 541
+ + ND FK++ + A + Y + + +PSN++ Y NR+ + + + ++ D+ +A+
Sbjct: 15 ELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAI 74
Query: 542 LIQPNYTKALLRRAASNSKLEKWADAVRDFE-VLRRELPDDNEIAESLFHAQVSLKKSRG 600
+ Y K RRAASN L K+ A+RD+E V++ + P D + +K+
Sbjct: 75 ELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAF 133
Query: 601 EE 602
E
Sbjct: 134 ER 135
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166 | Back alignment and structure |
|---|
Score = 103 bits (260), Expect = 5e-26
Identities = 32/140 (22%), Positives = 59/140 (42%), Gaps = 5/140 (3%)
Query: 241 DAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECE 300
AEELK N+ ++ + A+ Y +AI L P NA + NR+ A G A+ +
Sbjct: 12 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDAT 71
Query: 301 EAVRLDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTD 360
A+ LD Y + + R + + LG+ A R + + P + + + +C
Sbjct: 72 RAIELDKKYIKGYYRRAASNMALGKFRAALRDY-ETVVKVKPHD----KDAKMKYQECNK 126
Query: 361 ARKVGDWKSALREGDAAIAA 380
K ++ A+ + +
Sbjct: 127 IVKQKAFERAIAGDEHKRSV 146
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 4e-05
Identities = 26/150 (17%), Positives = 55/150 (36%), Gaps = 29/150 (19%)
Query: 360 DARKVGDWKSALREGDAAIAAGADFSPQLSMC---RVEALLKLHQ----LEDAESSLSNI 412
D K D+++A++ AI + +P ++ R A L+ L DA ++
Sbjct: 22 DYFKAKDYENAIKFYSQAI----ELNPSNAIYYGNRSLAYLRTECYGYALGDATRAI--- 74
Query: 413 PKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAV 472
+++ + Y + RA MALG+F A+ E ++ P + + +
Sbjct: 75 -ELDKKYIK------------GY--YRRAASNMALGKFRAALRDYETVVKVKPHDKDAKM 119
Query: 473 LLNNVKLVARARARGNDLFKSERFTEACQA 502
+ + +A + E +
Sbjct: 120 KYQECNKIVKQKAFERAIAGDEHKRSVVDS 149
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126 | Back alignment and structure |
|---|
Score = 128 bits (323), Expect = 4e-35
Identities = 31/118 (26%), Positives = 60/118 (50%)
Query: 482 RARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQAL 541
AR G + F + A +AY E ++ P ++ Y NRAA KL + ++ D N+A+
Sbjct: 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAI 65
Query: 542 LIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAESLFHAQVSLKKSR 599
PN+ +A +R+A + ++++A A+ + R + + N + + Q+ K S+
Sbjct: 66 EKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 123
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126 | Back alignment and structure |
|---|
Score = 106 bits (267), Expect = 2e-27
Identities = 31/90 (34%), Positives = 48/90 (53%)
Query: 242 AEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEE 301
AEE + G E + K + A+ Y + I AP +A SNRAAAL L EA+ +C +
Sbjct: 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNK 63
Query: 302 AVRLDPNYWRAHQRLGSLLVRLGQVENARR 331
A+ DPN+ RA+ R + + + + +A
Sbjct: 64 AIEKDPNFVRAYIRKATAQIAVKEYASALE 93
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111 | Back alignment and structure |
|---|
Score = 121 bits (305), Expect = 1e-32
Identities = 26/106 (24%), Positives = 46/106 (43%), Gaps = 1/106 (0%)
Query: 482 RARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQAL 541
+ + +GN LFK + EA Y + + P N V Y N+A KLG++ ++++ Q L
Sbjct: 6 KQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGL 65
Query: 542 LIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAES 587
+R +LE AV ++ E+ + E +
Sbjct: 66 RYTSTAEHVAIRSKLQ-YRLELAQGAVGSVQIPVVEVDELPEGYDR 110
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111 | Back alignment and structure |
|---|
Score = 115 bits (290), Expect = 1e-30
Identities = 28/102 (27%), Positives = 48/102 (47%), Gaps = 1/102 (0%)
Query: 241 DAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECE 300
E+ K GN L+++G + EA+ YD+ I+ P+N SN+A AL LG +A++ C+
Sbjct: 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQ 62
Query: 301 EAVRLDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQADP 342
+ +R R RL + A + + + D
Sbjct: 63 QGLRYTSTAEHVAIRSKLQY-RLELAQGAVGSVQIPVVEVDE 103
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111 | Back alignment and structure |
|---|
Score = 40.4 bits (95), Expect = 2e-04
Identities = 8/75 (10%), Positives = 19/75 (25%), Gaps = 14/75 (18%)
Query: 440 RAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEA 499
+A + LG + A+ ++ + R ++ E A
Sbjct: 44 KAMALIKLGEYTQAIQMCQQGLRYTSTAE-------------HVAIRSKLQYRLELAQGA 90
Query: 500 CQAYGEGLR-FDPSN 513
+ + D
Sbjct: 91 VGSVQIPVVEVDELP 105
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137 | Back alignment and structure |
|---|
Score = 121 bits (306), Expect = 1e-32
Identities = 29/127 (22%), Positives = 54/127 (42%), Gaps = 1/127 (0%)
Query: 482 RARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQAL 541
+ +GN LF ++ EA YG + +P +V Y NRA C+ K+ Q E+++ D +AL
Sbjct: 11 ELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRAL 70
Query: 542 LIQPNYTKALLRRAASNSKLEKWADAVRDFE-VLRRELPDDNEIAESLFHAQVSLKKSRG 600
+ KA ++E + +A+ + + + + A KK R
Sbjct: 71 ELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRW 130
Query: 601 EEVYNMK 607
+ +
Sbjct: 131 NSIEERR 137
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137 | Back alignment and structure |
|---|
Score = 108 bits (272), Expect = 5e-28
Identities = 29/118 (24%), Positives = 51/118 (43%), Gaps = 2/118 (1%)
Query: 242 AEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEE 301
A+ELK GN L+ + EA + Y +AI+ P A + +NRA + + +A+ +C
Sbjct: 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRR 68
Query: 302 AVRLDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPT-EVHRLQVVEKHLSKC 358
A+ LD +AH LG + + + A +L ++ + L
Sbjct: 69 ALELDGQSVKAHFFLGQCQLEMESYDEAIANL-QRAYSLAKEQRLNFGDDIPSALRIA 125
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137 | Back alignment and structure |
|---|
Score = 48.1 bits (115), Expect = 6e-07
Identities = 13/74 (17%), Positives = 23/74 (31%), Gaps = 12/74 (16%)
Query: 440 RAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEA 499
RA + + + E A+ +A ++D +VK A G + E + EA
Sbjct: 49 RALCYLKMQQPEQALADCRRALELDG---------QSVK--AHFF-LGQCQLEMESYDEA 96
Query: 500 CQAYGEGLRFDPSN 513
Sbjct: 97 IANLQRAYSLAKEQ 110
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137 | Back alignment and structure |
|---|
Score = 39.6 bits (93), Expect = 6e-04
Identities = 17/112 (15%), Positives = 39/112 (34%), Gaps = 29/112 (25%)
Query: 363 KVGDWKSALREGDAAIAAGADFSPQLSMC---RVEALLKLHQ----LEDAESSLSNIPKI 415
+ A AI +P +++ R LK+ Q L D +L ++
Sbjct: 21 VGRKYPEAAACYGRAI----TRNPLVAVYYTNRALCYLKMQQPEQALADCRRAL----EL 72
Query: 416 EPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRN 467
+ +V +A+ F Q ++ + ++ A+ ++A +
Sbjct: 73 DGQSV------------KAHFF--LGQCQLEMESYDEAIANLQRAYSLAKEQ 110
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 126 bits (319), Expect = 3e-32
Identities = 43/361 (11%), Positives = 94/361 (26%), Gaps = 75/361 (20%)
Query: 241 DAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECE 300
E G + + EA ++ AP + + G A+
Sbjct: 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALN 79
Query: 301 EAVRLDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQA---DPTEVHRLQVVEKHLSK 357
A LDP H L A L + P Q +
Sbjct: 80 HARMLDPKDIAVHAALAVSHTNEHNANAALASL----RAWLLSQP------QYEQLGSVN 129
Query: 358 CTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEP 417
+ D + ++ + + L ++ P
Sbjct: 130 LQADVDIDDLNVQSEDF--------------------FFAAPNEYRECRTLLHAALEMNP 169
Query: 418 STVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNV 477
+ ++ + + +++A +A ++ P + + L N
Sbjct: 170 N------------DAQLH--ASLGVLYNLSNNYDSAAANLRRAVELRPDDAQ---LWNK- 211
Query: 478 KLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDS 537
G L R EA AY L +P + N A + + Q++ + +
Sbjct: 212 --------LGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQL 263
Query: 538 NQALLIQPNYTKALLRRAASNSK------------LEKW--ADAV--RDFEVLRRELPDD 581
+A+ +Q T + ++ + + + ++ E +E
Sbjct: 264 VRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFAKEFGLQ 323
Query: 582 N 582
+
Sbjct: 324 S 324
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 116 bits (293), Expect = 8e-29
Identities = 46/323 (14%), Positives = 87/323 (26%), Gaps = 65/323 (20%)
Query: 256 GCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQR 315
G + + Y + ++ L + EA E + P A +
Sbjct: 1 GHMLQNNTDYPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRS 60
Query: 316 LGSLLVRLGQVENARRHLCLSGQQA---DPT--EVHRLQVVEKHLSKCTDARKVGDWKSA 370
LG + A L A DP VH +A
Sbjct: 61 LGLTQAENEKDGLAIIAL----NHARMLDPKDIAVH----------------------AA 94
Query: 371 LREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSS-SQTRFFG 429
L A++ H A +SL +P S
Sbjct: 95 L-----AVS----------------HTNEHNANAALASLRAWLLSQPQYEQLGSVNLQAD 133
Query: 430 MLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGND 489
+ + A + T A +++P + ++ + G
Sbjct: 134 VDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQL---HAS---------LGVL 181
Query: 490 LFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTK 549
S + A + P ++ L+ A + + +++ N+AL I P Y +
Sbjct: 182 YNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVR 241
Query: 550 ALLRRAASNSKLEKWADAVRDFE 572
+ A S S + ++ A +
Sbjct: 242 VMYNMAVSYSNMSQYDLAAKQLV 264
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 80.0 bits (198), Expect = 2e-16
Identities = 16/110 (14%), Positives = 34/110 (30%), Gaps = 1/110 (0%)
Query: 221 LAVGPENANVNRNRGGICGG-DAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFR 279
L P+ + D ++ + E ++ A+ + P +A
Sbjct: 116 LLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLH 175
Query: 280 SNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVRLGQVENA 329
++ A AV L P+ + +LG+ L + + A
Sbjct: 176 ASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEA 225
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 78.5 bits (194), Expect = 7e-16
Identities = 29/200 (14%), Positives = 53/200 (26%), Gaps = 25/200 (12%)
Query: 433 EAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFK 492
E + L A A E Q P E + G +
Sbjct: 22 ENP--MEEGLSMLKLANLAEAALAFEAVCQAAPEREEA---WRS---------LGLTQAE 67
Query: 493 SERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALL 552
+E+ A A DP + ++ A ++ LL QP Y +
Sbjct: 68 NEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGS 127
Query: 553 RRAASNSKLEKWADAVRDFEVLRRELPDDNEIAESLFHAQVSLKKSRGEEVYN-----MK 607
++ ++ DF + +L HA + + +++
Sbjct: 128 VNLQADVDIDDLNVQSEDFFFAAPNEYRE---CRTLLHAALEM-NPNDAQLHASLGVLYN 183
Query: 608 FGGEVEEVSSLEQFRAAVSL 627
+ + R AV L
Sbjct: 184 LSNNYDS--AAANLRRAVEL 201
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 70.4 bits (173), Expect = 3e-13
Identities = 24/182 (13%), Positives = 46/182 (25%), Gaps = 17/182 (9%)
Query: 448 GRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGL 507
G T E G + K EA A+
Sbjct: 1 GHMLQNNTDYPFEANNPYMYHENP---ME---------EGLSMLKLANLAEAALAFEAVC 48
Query: 508 RFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADA 567
+ P + + + + ++ N A ++ P A S++ A
Sbjct: 49 QAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAA 108
Query: 568 VRDFE-VLRRELPDDNEIAESLFHAQVSLKK-SRGEEVYNMKFGGEVEEVSSLEQFRAAV 625
+ L + P ++ A V + + E + E E AA+
Sbjct: 109 LASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYREC--RTLLHAAL 165
Query: 626 SL 627
+
Sbjct: 166 EM 167
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281 | Back alignment and structure |
|---|
Score = 124 bits (313), Expect = 6e-32
Identities = 35/144 (24%), Positives = 61/144 (42%), Gaps = 1/144 (0%)
Query: 482 RARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQAL 541
+ +GN LF ++ EA YG + +P +V Y NRA C+ K+ Q E+++ D +AL
Sbjct: 6 ELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRAL 65
Query: 542 LIQPNYTKALLRRAASNSKLEKWADAVRDFE-VLRRELPDDNEIAESLFHAQVSLKKSRG 600
+ KA ++E + +A+ + + + + A KK R
Sbjct: 66 ELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRW 125
Query: 601 EEVYNMKFGGEVEEVSSLEQFRAA 624
+ + E E S L + AA
Sbjct: 126 NSIEERRIHQESELHSYLTRLIAA 149
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281 | Back alignment and structure |
|---|
Score = 109 bits (274), Expect = 1e-26
Identities = 31/122 (25%), Positives = 54/122 (44%)
Query: 242 AEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEE 301
A+ELK GN L+ + EA + Y +AI+ P A + +NRA + + +A+ +C
Sbjct: 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRR 63
Query: 302 AVRLDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDA 361
A+ LD +AH LG + + + A +L + A ++ + L
Sbjct: 64 ALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKK 123
Query: 362 RK 363
R
Sbjct: 124 RW 125
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281 | Back alignment and structure |
|---|
Score = 48.4 bits (115), Expect = 3e-06
Identities = 19/147 (12%), Positives = 48/147 (32%), Gaps = 13/147 (8%)
Query: 440 RAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEA 499
RA + + + E A+ +A ++D +VK A G + E + EA
Sbjct: 44 RALCYLKMQQPEQALADCRRALELDG---------QSVK--AHFF-LGQCQLEMESYDEA 91
Query: 500 CQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNS 559
+ + + ++ + ++ + + Q + + L R +
Sbjct: 92 IANLQRAYSLAKEQRLNFGDDIPSALRIAK-KKRWNSIEERRIHQESELHSYLTRLIAAE 150
Query: 560 KLEKWADAVRDFEVLRRELPDDNEIAE 586
+ + + R+ E + + A
Sbjct: 151 RERELEECQRNHEGHEDDGHIRAQQAC 177
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 125 bits (317), Expect = 1e-31
Identities = 50/354 (14%), Positives = 90/354 (25%), Gaps = 66/354 (18%)
Query: 241 DAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECE 300
D + G ++G A+ +++ A+ P++ + A+
Sbjct: 63 DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALR 122
Query: 301 EAVRLDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTD 360
+ L P+ A L A L + L+ + T
Sbjct: 123 RCLELKPDNQTALMALAVSFTNESLQRQACEIL----RDW-------LRYTPAYAHLVTP 171
Query: 361 ARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTV 420
A + G + G +LL + + +++P+++
Sbjct: 172 AEEGAGGAGL---GPSKRILG-------------SLLSDSLFLEVKELFLAAVRLDPTSI 215
Query: 421 SSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLV 480
+ + G ++ AV A + P + L N
Sbjct: 216 ------------DPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYL---LWNK---- 256
Query: 481 ARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQA 540
G L + EA AY L P N LG +VE +A
Sbjct: 257 -----LGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEA 311
Query: 541 LLIQPNYTKALLRRAASN-----------SKLEKWADAV----RDFEVLRRELP 579
L +Q A + S L + RD L
Sbjct: 312 LNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLSTLLTMFG 365
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 118 bits (297), Expect = 6e-29
Identities = 57/343 (16%), Positives = 97/343 (28%), Gaps = 61/343 (17%)
Query: 238 CGGDAEEL-KRMGNELYRKGCFGE-ALSMYDKAISLAPRN----AAFRSNRAAALTGLGR 291
+ EE+ KR + + + YDK N G
Sbjct: 20 LQAELEEMAKRDAEAHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGD 79
Query: 292 IGEAVKECEEAVRLDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVV 351
+ AV E AV+ DP + A Q LG+ Q A
Sbjct: 80 LPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLA---------------------- 117
Query: 352 EKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSN 411
SALR + D L M + A L +
Sbjct: 118 ----------------ISALRR---CLELKPDNQTAL-MALAVSFTNESLQRQACEILRD 157
Query: 412 IPKIEP--STVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVE 469
+ P + + + G + + + ++ F A ++DP +++
Sbjct: 158 WLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSL-LSDSLFLEVKELFLAAVRLDPTSID 216
Query: 470 VAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQ 529
+ G S + +A + L P++ +L+ A Q
Sbjct: 217 -PDVQCG---------LGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQ 266
Query: 530 WERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFE 572
E +V +AL +QP Y ++ S L +AV F
Sbjct: 267 SEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFL 309
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 78.2 bits (193), Expect = 1e-15
Identities = 25/112 (22%), Positives = 39/112 (34%), Gaps = 3/112 (2%)
Query: 221 LAVGPENANVNRNRG-GICGGDAEELKRMGNELYRKGCFGEALSMYDKAISLAP--RNAA 277
L P A++ G G KR+ L F E ++ A+ L P +
Sbjct: 159 LRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPD 218
Query: 278 FRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVRLGQVENA 329
+ G +AV A+ + PN + +LG+ L Q E A
Sbjct: 219 VQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEA 270
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 70.1 bits (172), Expect = 6e-13
Identities = 33/203 (16%), Positives = 62/203 (30%), Gaps = 22/203 (10%)
Query: 431 LSEAYTFFVRAQIEMALGRFENAVTAA-EKAGQIDPRNVEVAVLLNNVKLVARARARGND 489
L E A+ L +++ +A +K Q + N ++ + G
Sbjct: 24 LEEMAKR--DAEAHPWLSDYDDLTSATYDKGYQFEE--------ENPLRDHPQPFEEGLR 73
Query: 490 LFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTK 549
+ A + ++ DP + + + Q ++ + L ++P+
Sbjct: 74 RLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQT 133
Query: 550 ALLRRAASNSKLEKWADAVRDFE-VLRRELPDDNEIAESLFHAQVSLKKSRGEEVYNM-- 606
AL+ A S + A LR P A + A+ + +
Sbjct: 134 ALMALAVSFTNESLQRQACEILRDWLRYT-PAY---AHLVTPAEEGAGGAGLGPSKRILG 189
Query: 607 --KFGGEVEEVSSLEQFRAAVSL 627
EV E F AAV L
Sbjct: 190 SLLSDSLFLEV--KELFLAAVRL 210
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 58.9 bits (143), Expect = 2e-09
Identities = 19/146 (13%), Positives = 33/146 (22%), Gaps = 37/146 (25%)
Query: 221 LAVGPENANVNRNRGGICG--GDAEE----LKR--------------MGNELYRKGCFGE 260
+ P++ + G L+R + + +
Sbjct: 91 VQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQ 150
Query: 261 ALSMYDKAISLAPR---------------NAAFRSNRAAALTGLGRIGEAVKECEEAVRL 305
A + + P +L E + AVRL
Sbjct: 151 ACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRL 210
Query: 306 DPNYWRA--HQRLGSLLVRLGQVENA 329
DP LG L G+ + A
Sbjct: 211 DPTSIDPDVQCGLGVLFNLSGEYDKA 236
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 123 bits (312), Expect = 3e-31
Identities = 50/345 (14%), Positives = 101/345 (29%), Gaps = 48/345 (13%)
Query: 241 DAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECE 300
+ + + + Y F + + P +A+ L L + E
Sbjct: 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSH 80
Query: 301 EAVRLDPNYWRAHQRLGSLLVRLGQ-VENARRHLCLSGQQA---DPT--EVHRLQVVEKH 354
+ V L P+ + +G + +G E+ARR+L +A + T
Sbjct: 81 KLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYL----SKATTLEKTYGPAWIAY----- 131
Query: 355 LSKCTDARKVGDWKSALREGDAAIAA---GADFSPQLS---MCRVEALLKLHQLEDAESS 408
G + E D A+AA A + + + AE
Sbjct: 132 ----------GHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERF 181
Query: 409 LSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNV 468
S I P + G ++ A A +
Sbjct: 182 FSQALSIAPE------------DPFVMHE--VGVVAFQNGEWKTAEKWFLDALEKIKAIG 227
Query: 469 EVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLG 528
+ L+ G+ K +++ EA + + L P N+ Y +G
Sbjct: 228 NEVTVDKWEPLLNN---LGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMG 284
Query: 529 QWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEV 573
+E +V+ + AL ++ + T ++ ++A ++
Sbjct: 285 NFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSEAYIGADI 329
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 101 bits (254), Expect = 1e-23
Identities = 40/359 (11%), Positives = 91/359 (25%), Gaps = 69/359 (19%)
Query: 256 GCF-GEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQ 314
G + + ++ +++ N + A K + DP +
Sbjct: 1 GSYNKPSETVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLP 60
Query: 315 RLGSLLVRLGQVENARRHLCLSGQQA---DPTEVHRLQVVEKHLSKCTDARKVGDWKSAL 371
LV L + + P + VG + +
Sbjct: 61 VHIGTLVELNKANEL----FYLSHKLVDLYP------SNPVSWFA-------VGCYYLMV 103
Query: 372 -REGDAAIAAGADFSPQLSMCR--VEA-------LLKLHQLEDAESSLSNIPKIEPSTVS 421
+ + A S ++ + A + + A ++ ++
Sbjct: 104 GHKNEHARRY---LSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCH- 159
Query: 422 SSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVA 481
+ + A +A I P + +++
Sbjct: 160 -----------LPMLY--IGLEYGLTNNSKLAERFFSQALSIAPED---PFVMHE----- 198
Query: 482 RARARGNDLFKSERFTEACQAYGEGLRFDPS---------NSVLYCNRAACWFKLGQWER 532
G F++ + A + + + L + L N KL ++
Sbjct: 199 ----VGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254
Query: 533 SVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAESLFHA 591
+++ QAL++ P +S + + +AV F DD L H
Sbjct: 255 ALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHC 313
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 80.8 bits (200), Expect = 1e-16
Identities = 18/106 (16%), Positives = 36/106 (33%), Gaps = 9/106 (8%)
Query: 237 ICGGDAEELKRMGNELYRKGCFGEALSMYDKAISLA---------PRNAAFRSNRAAALT 287
I D + +G ++ G + A + A+ + +N
Sbjct: 188 IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCR 247
Query: 288 GLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVRLGQVENARRHL 333
L + EA+ +A+ L P + +G + +G ENA +
Sbjct: 248 KLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYF 293
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 128 bits (322), Expect = 4e-31
Identities = 52/329 (15%), Positives = 108/329 (32%), Gaps = 53/329 (16%)
Query: 241 DAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECE 300
++ L + L+ + F + L++ K + + P N A+L G +
Sbjct: 304 SSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISN 363
Query: 301 EAVRLDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQA---DPT--EVHRLQVVEKHL 355
+ V P +G + + ++ ARR+ ++ DP
Sbjct: 364 DLVDRHPEKAVTWLAVGIYYLCVNKISEARRYF----SKSSTMDPQFGPAWIGF------ 413
Query: 356 SKCTDARKVGDWKSALREGDAAIAA---GADFSPQLS---MCRVEALLKLHQLEDAESSL 409
+ E D AI+A A + ++L + A L
Sbjct: 414 ---------AHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYL 464
Query: 410 SNIPKIEPSTVSSSQTRFFGMLSE-AYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNV 468
+ + +L+E F ++ ++ A+ F+NA+ +K +
Sbjct: 465 QSSYALFQY--------DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWA 516
Query: 469 EVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLG 528
N G+ K + + A A +GL +++ ++ A +
Sbjct: 517 A---TWAN---------LGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKK 564
Query: 529 QWERSVEDSNQALLIQPNYTKA--LLRRA 555
++ +++L I PN A LL+RA
Sbjct: 565 IPGLAITHLHESLAISPNEIMASDLLKRA 593
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 108 bits (272), Expect = 8e-25
Identities = 46/331 (13%), Positives = 95/331 (28%), Gaps = 66/331 (19%)
Query: 242 AEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEE 301
L +G + A + + + + R T L A + +E
Sbjct: 167 QGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMC-YLRGQVYTNLSNFDRAKECYKE 225
Query: 302 AVRLDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDA 361
A+ +D + A +L S + L+ + E L +
Sbjct: 226 ALMVDAKCYEAFDQLVS-------------NHLLTADE------------EWDLVLKLNY 260
Query: 362 RKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVS 421
A F L M ++ +L AE LS+I +E S+
Sbjct: 261 ST-------------YSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSS-- 305
Query: 422 SSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVA 481
+ +A RF + + K +IDP N++V
Sbjct: 306 -----------DLL--LCKADTLFVRSRFIDVLAITTKILEIDPYNLDV---YPL----- 344
Query: 482 RARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQAL 541
L +S + + + P +V + + + + + +++
Sbjct: 345 ----HLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSS 400
Query: 542 LIQPNYTKALLRRAASNSKLEKWADAVRDFE 572
+ P + A + A S + + A+ +
Sbjct: 401 TMDPQFGPAWIGFAHSFAIEGEHDQAISAYT 431
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 106 bits (267), Expect = 3e-24
Identities = 35/353 (9%), Positives = 84/353 (23%), Gaps = 81/353 (22%)
Query: 242 AEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEE 301
L + Y +I+ +++ +A L R + + +
Sbjct: 271 LRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTK 330
Query: 302 AVRLDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDA 361
+ +DP + + L
Sbjct: 331 ILEIDPYNLDVYPLHLA---------------SL-----------------HES------ 352
Query: 362 RKVGDWKSALREGDAAIAAGADFSPQLSM--CRV-EALLKLHQLEDAESSLSNIPKIEPS 418
G+ + + D P+ ++ V L ++++ +A S ++P
Sbjct: 353 ---GEKNKLYLISNDLV----DRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQ 405
Query: 419 TVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVK 478
A+ F A G + A++A A ++
Sbjct: 406 ------------FGPAWIGF--AHSFAIEGEHDQAISAYTTAARLFQGTHLP---YLF-- 446
Query: 479 LVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSN 538
G + A + + +L F + ++
Sbjct: 447 -------LGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQ 499
Query: 539 QALLI-------QPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEI 584
ALL+ + + + KL+ + A+ +D +
Sbjct: 500 NALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANV 552
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 83.7 bits (207), Expect = 6e-17
Identities = 47/349 (13%), Positives = 98/349 (28%), Gaps = 49/349 (14%)
Query: 240 GDAEELKRMGNELYRKGCFGEALSMYDKAISLAPR-NAAFRSNRAAALTGLGRIGEAVKE 298
+ L+ ++ + + A + +K + + N AF A G A
Sbjct: 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAF--WLAQVYCCTGDYARAKCL 139
Query: 299 CEEAVRLDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKC 358
+ L LV+L + A L + + + +++ +
Sbjct: 140 LTKE-DLYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEK-NANKLLMQDGGIK 197
Query: 359 TDA----------RKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESS 408
+A + ++ A A+ A LL + D
Sbjct: 198 LEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLK 257
Query: 409 LSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFEN-----AVTAAEKAGQI 463
L+ + S+ F+R+ + L + + +
Sbjct: 258 LN-----------------YSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSING 300
Query: 464 DPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAAC 523
++ ++ L + + LF RF + + L DP N +Y A
Sbjct: 301 LEKSSDL---LLC---------KADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLAS 348
Query: 524 WFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFE 572
+ G+ + SN + P L + K ++A R F
Sbjct: 349 LHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFS 397
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 76.8 bits (189), Expect = 9e-15
Identities = 19/104 (18%), Positives = 33/104 (31%), Gaps = 7/104 (6%)
Query: 237 ICGGDAEELKRMGNELYRKGCFGEALSMYDKAISLA-------PRNAAFRSNRAAALTGL 289
+ D L +G + K A++ + A+ L AA +N A L
Sbjct: 470 LFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKL 529
Query: 290 GRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVRLGQVENARRHL 333
A+ + + L N H + + + A HL
Sbjct: 530 KMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHL 573
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 74.1 bits (182), Expect = 6e-14
Identities = 14/80 (17%), Positives = 29/80 (36%)
Query: 241 DAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECE 300
A +G+ + + A+ ++ + L+ +A + A G A+
Sbjct: 515 WAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLH 574
Query: 301 EAVRLDPNYWRAHQRLGSLL 320
E++ + PN A L L
Sbjct: 575 ESLAISPNEIMASDLLKRAL 594
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 65.6 bits (160), Expect = 3e-11
Identities = 42/310 (13%), Positives = 82/310 (26%), Gaps = 53/310 (17%)
Query: 289 LGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRL 348
+ A E+ + + N A L + G A+ L + L
Sbjct: 97 QQQYKCAAFVGEKVLDITGNPNDAFW-LAQVYCCTGDYARAKCLLTKEDLYNRSSACRYL 155
Query: 349 QVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESS 408
+ C K+ DW+ AL E ++A
Sbjct: 156 ------AAFCL--VKLYDWQGALN------------------LLGETNPFRKDEKNANKL 189
Query: 409 LSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNV 468
L I+ EA ++R Q+ L F+ A ++A +D +
Sbjct: 190 LMQDGGIKL---------------EASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCY 234
Query: 469 EVAVLLNNVKLVARARARGNDLFKSERFTEACQ-AYGEGLRFDPSNSVLYCNRAACWFKL 527
E L + L E + + Y + D +
Sbjct: 235 EAFDQL----------VSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSH 284
Query: 528 GQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAES 587
R ED ++ + LL +A + ++ D + + P + ++
Sbjct: 285 EDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPL 344
Query: 588 LFHAQVSLKK 597
+ +
Sbjct: 345 HLASLHESGE 354
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 53.3 bits (128), Expect = 2e-07
Identities = 33/258 (12%), Positives = 72/258 (27%), Gaps = 43/258 (16%)
Query: 388 LSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTF-----FVRAQ 442
++ + AL + + + + S+ + ++ ++R
Sbjct: 31 MTPPSMGALNANNSNSQLSTLTISPMTYLANNTSTDGSFLKERNAQNTDSLSREDYLRLW 90
Query: 443 IEMAL--GRFENAVTAAEKAGQIDP---------------RNVEVAV-LLNNVKLVARAR 484
AL +++ A EK I + A LL L R+
Sbjct: 91 RHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSS 150
Query: 485 A----RGNDLFKSERFTEACQAYGEGLRFD----------------PSNSVLYCNRAACW 524
A L K + A GE F + + R +
Sbjct: 151 ACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVY 210
Query: 525 FKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEI 584
L ++R+ E +AL++ +A + +++ + +D
Sbjct: 211 TNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAF 270
Query: 585 AESLFHAQVSLKKSRGEE 602
SL+ +++ E
Sbjct: 271 LRSLYMLKLNKTSHEDEL 288
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 129 bits (325), Expect = 6e-31
Identities = 40/353 (11%), Positives = 79/353 (22%), Gaps = 43/353 (12%)
Query: 241 DAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECE 300
+ L + +A L P ++ L + +
Sbjct: 225 QVVAIASHDGGKQALETMQRLLPVLCQAHGLPPDQVVAIASNIGGKQALETVQRLLPVLC 284
Query: 301 EAVRLDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQ--VVEKHLSKC 358
+A L P+ A G L V+ + H L V S
Sbjct: 285 QAHGLTPDQVVAIASHGGGKQALETVQRLL---------PVLCQAHGLTPDQVVAIASHD 335
Query: 359 TDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPS 418
+ + + L A D ++ L ++ L + P
Sbjct: 336 GGKQALETVQRLLPVLCQAHGLTPDQVVAIAS-NGGGKQALETVQRLLPVLCQAHGLTPD 394
Query: 419 TV----SSSQTRFFGMLSEAYTFFVRA---------------QIEMALGRFENAVTAAEK 459
V S+ + + +A + AL + + +
Sbjct: 395 QVVAIASNGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQ 454
Query: 460 AGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCN 519
+ P V + + E + + P V +
Sbjct: 455 THGLTPAQVVA---IAS---------HDGGKQALETVQQLLPVLCQAHGLTPDQVVAIAS 502
Query: 520 RAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFE 572
L +R + QA + P+ A+ LE +
Sbjct: 503 NIGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLC 555
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 119 bits (299), Expect = 7e-28
Identities = 38/334 (11%), Positives = 71/334 (21%), Gaps = 39/334 (11%)
Query: 241 DAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECE 300
+ L + +A L P ++ L + +
Sbjct: 191 QVVAIASNNGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQRLLPVLC 250
Query: 301 EAVRLDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRL--QVVEKHLSKC 358
+A L P+ A L V+ + H L V S
Sbjct: 251 QAHGLPPDQVVAIASNIGGKQALETVQRL---------LPVLCQAHGLTPDQVVAIASHG 301
Query: 359 TDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPS 418
+ + + L A D ++ L ++ L + P
Sbjct: 302 GGKQALETVQRLLPVLCQAHGLTPDQVVAIAS-HDGGKQALETVQRLLPVLCQAHGLTPD 360
Query: 419 TVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVK 478
V A + AL + + +A + P V +
Sbjct: 361 QV------------VAI--ASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGKQ 406
Query: 479 LVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSN 538
+ E + P V + L +R +
Sbjct: 407 AL-------------ETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLC 453
Query: 539 QALLIQPNYTKALLRRAASNSKLEKWADAVRDFE 572
Q + P A+ LE +
Sbjct: 454 QTHGLTPAQVVAIASHDGGKQALETVQQLLPVLC 487
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 117 bits (295), Expect = 2e-27
Identities = 38/339 (11%), Positives = 72/339 (21%), Gaps = 38/339 (11%)
Query: 236 GICGGDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEA 295
G+ + L + +A L P ++ L +
Sbjct: 491 GLTPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRL 550
Query: 296 VKECEEAVRLDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRL--QVVEK 353
+ +A L P+ A G L V+ + H L V
Sbjct: 551 LPVLCQAHGLTPDQVVAIASNGGGKQALETVQRL---------LPVLCQAHGLTQVQVVA 601
Query: 354 HLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIP 413
S + + + L A ++ L ++ L
Sbjct: 602 IASNIGGKQALETVQRLLPVLCQAHGLTPAQVVAIA-SHDGGKQALETVQRLLPVLCQAH 660
Query: 414 KIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVL 473
+ P A + AL + + +A + V
Sbjct: 661 GLTPD------------QVVAIAS--NGGGKQALETVQRLLPVLCQAHGLTQEQVVA--- 703
Query: 474 LNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERS 533
+ + E + P V + L +R
Sbjct: 704 IAS---------NNGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRL 754
Query: 534 VEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFE 572
+ QA + P A+ LE +
Sbjct: 755 LPVLCQAHGLTPAQVVAIASNIGGKQALETVQRLLPVLC 793
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 117 bits (294), Expect = 3e-27
Identities = 37/359 (10%), Positives = 74/359 (20%), Gaps = 42/359 (11%)
Query: 241 DAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECE 300
+ L + +A L P ++ L + +
Sbjct: 327 QVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLC 386
Query: 301 EAVRLDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRL--QVVEKHLSKC 358
+A L P+ A G L V+ + H L V S
Sbjct: 387 QAHGLTPDQVVAIASNGGKQ-ALETVQRL---------LPVLCQAHGLTPDQVVAIASHD 436
Query: 359 TDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPS 418
+ + + L ++ L ++ L + P
Sbjct: 437 GGKQALETVQRLLPVLCQTHGLTPAQVVAIA-SHDGGKQALETVQQLLPVLCQAHGLTPD 495
Query: 419 TVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVK 478
+ + AL + + +A + P V + +
Sbjct: 496 --------------QVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQVVA---IAS-- 536
Query: 479 LVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSN 538
G E + P V + L +R +
Sbjct: 537 -------NGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLC 589
Query: 539 QALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAESLFHAQVSLKK 597
QA + A+ LE + P ++ +
Sbjct: 590 QAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPAQ---VVAIASHDGGKQA 645
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 112 bits (280), Expect = 1e-25
Identities = 39/335 (11%), Positives = 78/335 (23%), Gaps = 39/335 (11%)
Query: 240 GDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKEC 299
G ++ + G + ++ ++L P ++ L + +
Sbjct: 156 GQLVKIAKRGGVTAMEAVHASRNALTGAPLNLTPAQVVAIASNNGGKQALETVQRLLPVL 215
Query: 300 EEAVRLDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRL--QVVEKHLSK 357
+A L P A L ++ + H L V S
Sbjct: 216 CQAHGLTPAQVVAIASHDGGKQALETMQRL---------LPVLCQAHGLPPDQVVAIASN 266
Query: 358 CTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEP 417
+ + + L A D ++ L ++ L + P
Sbjct: 267 IGGKQALETVQRLLPVLCQAHGLTPDQVVAIAS-HGGGKQALETVQRLLPVLCQAHGLTP 325
Query: 418 STVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNV 477
V A + AL + + +A + P V + +
Sbjct: 326 DQV------------VAI--ASHDGGKQALETVQRLLPVLCQAHGLTPDQVVA---IAS- 367
Query: 478 KLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDS 537
G E + P V + L +R +
Sbjct: 368 --------NGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGKQ-ALETVQRLLPVL 418
Query: 538 NQALLIQPNYTKALLRRAASNSKLEKWADAVRDFE 572
QA + P+ A+ LE +
Sbjct: 419 CQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLC 453
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 109 bits (273), Expect = 1e-24
Identities = 44/360 (12%), Positives = 78/360 (21%), Gaps = 45/360 (12%)
Query: 241 DAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECE 300
+ G L + +A L P ++ L + +
Sbjct: 530 QVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLC 589
Query: 301 EAVRLDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTD 360
+A L A L V+ L V S
Sbjct: 590 QAHGLTQVQVVAIASNIGGKQALETVQRLLPVL-------CQAHGLTPAQVVAIASHDGG 642
Query: 361 ARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTV 420
+ + + L A D ++ L ++ L + V
Sbjct: 643 KQALETVQRLLPVLCQAHGLTPDQVVAIA-SNGGGKQALETVQRLLPVLCQAHGLTQEQV 701
Query: 421 SSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLV 480
A + AL + + +A + P V + +
Sbjct: 702 ------------VAIAS--NNGGKQALETVQRLLPVLCQAHGLTPDQVVA---IAS---- 740
Query: 481 ARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQA 540
G E + P+ V + L +R + Q
Sbjct: 741 -----NGGGKQALETVQRLLPVLCQAHGLTPAQVVAIASNIGGKQALETVQRLLPVLCQD 795
Query: 541 LLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAESLFHAQVSLKKSRG 600
+ A+ LE ++R LP + A L QV S
Sbjct: 796 HGLTLAQVVAIASNIGGKQALET----------VQRLLPVLCQ-AHGLTQDQVVAIASNI 844
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 92.4 bits (229), Expect = 2e-19
Identities = 43/346 (12%), Positives = 79/346 (22%), Gaps = 43/346 (12%)
Query: 254 RKGCFGEALSMYDKAISLAPRNA-----AFRSNRAAALTGLGRIGEAVKECEEAVRLDP- 307
G Y I+ P + A + +A + ++LD
Sbjct: 97 HPAALGTVAVTYQHIITALPEATHEDIVGVGKQWSGARALEALLTDAGELRGPPLQLDTG 156
Query: 308 NYWRAHQRLGSLLV-RLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGD 366
+ +R G + + NA L+ A + ++ L
Sbjct: 157 QLVKIAKRGGVTAMEAVHASRNALTGAPLNLTPAQVVAIASNNGGKQAL---------ET 207
Query: 367 WKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTR 426
+ L A ++ L ++ L + P V
Sbjct: 208 VQRLLPVLCQAHGLTPAQVVAIA-SHDGGKQALETMQRLLPVLCQAHGLPPDQV------ 260
Query: 427 FFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARAR 486
A + AL + + +A + P V + +
Sbjct: 261 ------VAI--ASNIGGKQALETVQRLLPVLCQAHGLTPDQVVA---IAS---------H 300
Query: 487 GNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPN 546
G E + P V + L +R + QA + P+
Sbjct: 301 GGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPD 360
Query: 547 YTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAESLFHAQ 592
A+ LE + PD S Q
Sbjct: 361 QVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGKQ 406
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 92.4 bits (229), Expect = 2e-19
Identities = 36/334 (10%), Positives = 71/334 (21%), Gaps = 38/334 (11%)
Query: 241 DAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECE 300
+ G L + +A L ++ L + +
Sbjct: 564 QVVAIASNGGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLC 623
Query: 301 EAVRLDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRL--QVVEKHLSKC 358
+A L P A L V+ + H L V S
Sbjct: 624 QAHGLTPAQVVAIASHDGGKQALETVQRLL---------PVLCQAHGLTPDQVVAIASNG 674
Query: 359 TDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPS 418
+ + + L A + ++ L ++ L + P
Sbjct: 675 GGKQALETVQRLLPVLCQAHGLTQEQVVAIA-SNNGGKQALETVQRLLPVLCQAHGLTPD 733
Query: 419 TVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVK 478
V A + AL + + +A + P V + +
Sbjct: 734 QV------------VAI--ASNGGGKQALETVQRLLPVLCQAHGLTPAQVVA---IAS-- 774
Query: 479 LVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSN 538
E + + V + L +R +
Sbjct: 775 -------NIGGKQALETVQRLLPVLCQDHGLTLAQVVAIASNIGGKQALETVQRLLPVLC 827
Query: 539 QALLIQPNYTKALLRRAASNSKLEKWADAVRDFE 572
QA + + A+ LE +
Sbjct: 828 QAHGLTQDQVVAIASNIGGKQALETVQRLLPVLC 861
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 80.1 bits (197), Expect = 1e-15
Identities = 38/337 (11%), Positives = 78/337 (23%), Gaps = 53/337 (15%)
Query: 241 DAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECE 300
+ G L + +A L ++ L + +
Sbjct: 666 QVVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLC 725
Query: 301 EAVRLDPNYWRAHQRLGSLLVRLGQVENA----RRHLCLSGQQADP-----TEVHRLQVV 351
+A L P+ A G L V+ + L+ Q L+ V
Sbjct: 726 QAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPAQVVAIASNIGGKQALETV 785
Query: 352 EKHLSKCTDARKV-----------GDWKSALREGDAAIAAGAD---FSPQLS---MCRVE 394
++ L + K AL + + +
Sbjct: 786 QRLLPVLCQDHGLTLAQVVAIASNIGGKQALETVQRLLPVLCQAHGLTQDQVVAIASNIG 845
Query: 395 ALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAV 454
L ++ L + P + + + A+
Sbjct: 846 GKQALETVQRLLPVLCQDHGLTPD---------------------QVVAIASNIGGKQAL 884
Query: 455 TAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNS 514
++ + ++ L ++VA A G E + P
Sbjct: 885 ETVQRLLPVLCQDHG----LTLDQVVAIASNGGKQAL--ETVQRLLPVLCQDHGLTPDQV 938
Query: 515 VLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKAL 551
V + + L +R + Q + PN A+
Sbjct: 939 VAIASNSGGKQALETVQRLLPVLCQDHGLTPNQVVAI 975
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 123 bits (310), Expect = 9e-31
Identities = 52/357 (14%), Positives = 85/357 (23%), Gaps = 78/357 (21%)
Query: 241 DAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECE 300
D G + ++G + + AI P +A A+ +
Sbjct: 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQ 123
Query: 301 EAVRLDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQA---DPTEVHRLQVVEKHLSK 357
+ L PN +A L ++A L + +P + +K
Sbjct: 124 RCLELQPNNLKALMALAVSYTNTSHQQDACEAL----KNWIKQNP------KYKYLVKNK 173
Query: 358 CTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEP 417
+ + + EA
Sbjct: 174 KGSPGLTRRMSKSPVDSSVLEGVKELYL--------EAA-----------------HQNG 208
Query: 418 STVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNV 477
+ + + G F A+ A A + P + L N
Sbjct: 209 DMI------------DPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPED---YSLWNR- 252
Query: 478 KLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDS 537
G L +R EA +AY L P N LG + +V +
Sbjct: 253 --------LGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNF 304
Query: 538 NQALLIQPNYTKAL--------------LRRAASNSKLEKWADAV--RDFEVLRREL 578
AL +Q LR A S + A D +VL R
Sbjct: 305 LTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDLDVLLRAF 361
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 89.3 bits (222), Expect = 3e-19
Identities = 44/334 (13%), Positives = 87/334 (26%), Gaps = 52/334 (15%)
Query: 258 FGEALSMYDKAISLAPRNAA--------FRSNRAAALTGLGRIGEAVKECEEAVRLDPNY 309
F A + + + A + + + K
Sbjct: 5 FERAKAAVESDTEFWDKMQAEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTENPFKD 64
Query: 310 WRAHQRLGSLLVRLGQVENARRHLCLSGQQA---DPTEVHRLQVVEKHLSKCTDARKVGD 366
W G ++ G + + + A DP E + +
Sbjct: 65 WPGAFEEGLKRLKEGDLPVTILFM----EAAILQDP------GDAEAWQFLGITQAENEN 114
Query: 367 WKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTR 426
++A+ + + L M + +DA +L N K P
Sbjct: 115 EQAAIVALQRCLELQPNNLKAL-MALAVSYTNTSHQQDACEALKNWIKQNPK-------- 165
Query: 427 FFGMLSEAY-----TFFVRAQIEMAL---GRFENAVTAAEKAGQIDPRNVEVAVLLNNVK 478
+ + ++ + E +A + ++ +
Sbjct: 166 ----YKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTG--- 218
Query: 479 LVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSN 538
G S F A A+ L P + L+ A + E +VE
Sbjct: 219 -------LGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYT 271
Query: 539 QALLIQPNYTKALLRRAASNSKLEKWADAVRDFE 572
+AL IQP + ++ S L + +AV +F
Sbjct: 272 RALEIQPGFIRSRYNLGISCINLGAYREAVSNFL 305
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 81.3 bits (201), Expect = 1e-16
Identities = 24/149 (16%), Positives = 39/149 (26%), Gaps = 12/149 (8%)
Query: 438 FVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFT 497
F + G + E A DP + E G ++E
Sbjct: 69 FEEGLKRLKEGDLPVTILFMEAAILQDPGDAEA---WQF---------LGITQAENENEQ 116
Query: 498 EACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAAS 557
A A L P+N A + + + E + P Y + + S
Sbjct: 117 AAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGS 176
Query: 558 NSKLEKWADAVRDFEVLRRELPDDNEIAE 586
+ + + D VL E A
Sbjct: 177 PGLTRRMSKSPVDSSVLEGVKELYLEAAH 205
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 76.3 bits (188), Expect = 5e-15
Identities = 18/111 (16%), Positives = 35/111 (31%), Gaps = 6/111 (5%)
Query: 221 LAVGPENANVNRNRGGICGGDAEELKRMGNELYRKGCFGEALSMYDKAISLAP--RNAAF 278
+ P+ + +N+ G G +RM +Y +A +
Sbjct: 160 IKQNPKYKYLVKNKKGSPG----LTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDL 215
Query: 279 RSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVRLGQVENA 329
++ G A+ A+ + P + RLG+ L + E A
Sbjct: 216 QTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEA 266
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 71.6 bits (176), Expect = 2e-13
Identities = 21/174 (12%), Positives = 47/174 (27%), Gaps = 18/174 (10%)
Query: 399 LHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAE 458
+ E A++++ + + Q + M + Q +
Sbjct: 2 AMEFERAKAAVESDTEFWDK----MQAEWEEMARRNW--ISENQEAQNQVTVSASEKGYY 55
Query: 459 KAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYC 518
+ ++ A G K + DP ++ +
Sbjct: 56 FHTENPFKDWPGA--FE----------EGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQ 103
Query: 519 NRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFE 572
+ + ++ + L +QPN KAL+ A S + DA +
Sbjct: 104 FLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALK 157
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131 | Back alignment and structure |
|---|
Score = 114 bits (287), Expect = 5e-30
Identities = 30/125 (24%), Positives = 53/125 (42%), Gaps = 10/125 (8%)
Query: 482 RARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQAL 541
+ + GND +K + F A + Y + DP+N N+AA +F+ G + + E +A+
Sbjct: 6 KEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAI 65
Query: 542 LIQPN-------YTKALLRRAASNSKLEKWADAVRDFE-VLRRELPDDNEIAESLFHAQV 593
+ KA R S K EK+ DA+ + L ++ + A+
Sbjct: 66 EVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSL--AEHRTPDVLKKCQQAEK 123
Query: 594 SLKKS 598
LK+
Sbjct: 124 ILKEQ 128
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131 | Back alignment and structure |
|---|
Score = 103 bits (260), Expect = 2e-26
Identities = 32/129 (24%), Positives = 57/129 (44%), Gaps = 16/129 (12%)
Query: 241 DAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECE 300
A + K +GN+ Y+K F AL YDKA L P N + +N+AA G + + CE
Sbjct: 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCE 62
Query: 301 EAVRLDPN-------YWRAHQRLGSLLVRLGQVENARRHLCLSGQQA-----DPTEVHRL 348
+A+ + +A+ R+G+ + + ++A ++ P + +
Sbjct: 63 KAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFY----NKSLAEHRTPDVLKKC 118
Query: 349 QVVEKHLSK 357
Q EK L +
Sbjct: 119 QQAEKILKE 127
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 2e-07
Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 7/78 (8%)
Query: 440 RAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARAR-GNDLFKSERFTE 498
+A + G + EKA ++ N E + + +A+A AR GN FK E++ +
Sbjct: 44 QAAVYFEKGDYNKCRELCEKAIEVGRENRE------DYRQIAKAYARIGNSYFKEEKYKD 97
Query: 499 ACQAYGEGLRFDPSNSVL 516
A Y + L + VL
Sbjct: 98 AIHFYNKSLAEHRTPDVL 115
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164 | Back alignment and structure |
|---|
Score = 112 bits (283), Expect = 3e-29
Identities = 24/89 (26%), Positives = 44/89 (49%)
Query: 484 RARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLI 543
++ GN + +++A Y + L P+N + NRAA + GQ E++ ED+ A ++
Sbjct: 15 KSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVV 74
Query: 544 QPNYTKALLRRAASNSKLEKWADAVRDFE 572
P Y+KA R + + + A +E
Sbjct: 75 DPKYSKAWSRLGLARFDMADYKGAKEAYE 103
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164 | Back alignment and structure |
|---|
Score = 109 bits (274), Expect = 5e-28
Identities = 38/155 (24%), Positives = 69/155 (44%), Gaps = 5/155 (3%)
Query: 241 DAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECE 300
++++LK GN + + +A+ +Y +A+S+AP N + SNRAAA + G+ +A ++ E
Sbjct: 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAE 69
Query: 301 EAVRLDPNYWRAHQRLGSLLVRLGQVENA----RRHLCLSGQQADPTEVHRLQVVEKHLS 356
A +DP Y +A RLG + + A + + G L+ ++ +
Sbjct: 70 LATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTKRKIE 129
Query: 357 KCTDARKVGDWKSALREGDAAIAAGA-DFSPQLSM 390
+ + G + A G D S SM
Sbjct: 130 EANRGAEPPADDVDDAAGASRGAGGMPDLSSLASM 164
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164 | Back alignment and structure |
|---|
Score = 57.0 bits (138), Expect = 1e-09
Identities = 22/116 (18%), Positives = 41/116 (35%), Gaps = 12/116 (10%)
Query: 445 MALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYG 504
MA + A+ +A I P N + L+N RA A S + +A +
Sbjct: 22 MARKEYSKAIDLYTQALSIAPAN---PIYLSN-----RAAA----YSASGQHEKAAEDAE 69
Query: 505 EGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSK 560
DP S + F + ++ + E + + + N ++R +K
Sbjct: 70 LATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTK 125
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162 | Back alignment and structure |
|---|
Score = 109 bits (274), Expect = 5e-28
Identities = 34/144 (23%), Positives = 55/144 (38%), Gaps = 18/144 (12%)
Query: 477 VKLVARARARGNDLFKSERFTEACQAYGEGLRF------------------DPSNSVLYC 518
+K V R +GN+LF + + EA AY + L D N LY
Sbjct: 8 LKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYA 67
Query: 519 NRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRREL 578
N + C+ +G + E S++ L + KAL RRA + K +A D ++L R
Sbjct: 68 NMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127
Query: 579 PDDNEIAESLFHAQVSLKKSRGEE 602
P + + + +
Sbjct: 128 PAAASVVAREMKIVTERRAEKKAD 151
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162 | Back alignment and structure |
|---|
Score = 74.3 bits (183), Expect = 8e-16
Identities = 20/108 (18%), Positives = 42/108 (38%), Gaps = 18/108 (16%)
Query: 242 AEELKRMGNELYRKGCFGEALSMYDKAIS------------------LAPRNAAFRSNRA 283
E L++ GNEL+ + + EA+ Y A++ L +N +N +
Sbjct: 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMS 70
Query: 284 AALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVRLGQVENARR 331
+G + EA + E ++ + +A R + +++ A
Sbjct: 71 QCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEE 118
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 7e-05
Identities = 16/77 (20%), Positives = 27/77 (35%), Gaps = 4/77 (5%)
Query: 256 GCFGEALSMYDKAISLAPRN--AAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAH 313
G EA + + N A FR RA A ++ EA ++ + +R P
Sbjct: 77 GDLHEAEETSSEVLKREETNEKALFR--RAKARIAAWKLDEAEEDLKLLLRNHPAAASVV 134
Query: 314 QRLGSLLVRLGQVENAR 330
R ++ + A
Sbjct: 135 AREMKIVTERRAEKKAD 151
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198 | Back alignment and structure |
|---|
Score = 110 bits (277), Expect = 5e-28
Identities = 29/142 (20%), Positives = 52/142 (36%), Gaps = 16/142 (11%)
Query: 477 VKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNS----------------VLYCNR 520
V+ + GN+ FK EA Y E L F N
Sbjct: 35 VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNL 94
Query: 521 AACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPD 580
A C+ K + ++++ +++ L I N KAL + +N +A + P+
Sbjct: 95 ATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN 154
Query: 581 DNEIAESLFHAQVSLKKSRGEE 602
+ +I S LK++R ++
Sbjct: 155 NLDIRNSYELCVNKLKEARKKD 176
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198 | Back alignment and structure |
|---|
Score = 76.4 bits (188), Expect = 5e-16
Identities = 25/141 (17%), Positives = 51/141 (36%), Gaps = 20/141 (14%)
Query: 242 AEELKRMGNELYRKGCFGEALSMYDKAISLAPRN----------------AAFRSNRAAA 285
A ++K GNE ++K EA+ Y +A+ + N A
Sbjct: 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATC 97
Query: 286 LTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPT-- 343
+A+ + +++D N +A +LG + G +E A+ +L +P
Sbjct: 98 YNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENL-YKAASLNPNNL 156
Query: 344 EVHR-LQVVEKHLSKCTDARK 363
++ ++ L + K
Sbjct: 157 DIRNSYELCVNKLKEARKKDK 177
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198 | Back alignment and structure |
|---|
Score = 44.8 bits (106), Expect = 3e-05
Identities = 17/99 (17%), Positives = 30/99 (30%), Gaps = 18/99 (18%)
Query: 388 LSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMAL 447
L+ C K A S + KI+ + V +A + M
Sbjct: 94 LATC----YNKNKDYPKAIDHASKVLKIDKNNV------------KAL--YKLGVANMYF 135
Query: 448 GRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARAR 486
G E A KA ++P N+++ + +
Sbjct: 136 GFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARK 174
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 109 bits (275), Expect = 7e-27
Identities = 46/303 (15%), Positives = 73/303 (24%), Gaps = 74/303 (24%)
Query: 241 DAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECE 300
A+ L G G A + + +A+++ P + LT G A + +
Sbjct: 42 RAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFD 101
Query: 301 EAVRLDPNYWRAHQRLGSLLVRLGQVENA----RRHLCLSGQQADPTEVHRLQVVEKHLS 356
+ LDP Y AH G L G+ + A Q DP + R L
Sbjct: 102 SVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFY-----QDDPNDPFR------SLW 150
Query: 357 KCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIE 416
+ L E A E + K +
Sbjct: 151 L-------YLAEQKLDEKQAK-------------------------EVLKQHFEKSDKEQ 178
Query: 417 PSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNN 476
G +SE E A + E
Sbjct: 179 WGWNIVEFYL--GNISE-------------QTLMERLKADATDNTSLAEHLSET---NFY 220
Query: 477 VKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVED 536
G A + + + N V + LGQ + + +
Sbjct: 221 ---------LGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLGQDQDDLAE 271
Query: 537 SNQ 539
S+Q
Sbjct: 272 SDQ 274
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 81.2 bits (201), Expect = 4e-17
Identities = 32/190 (16%), Positives = 62/190 (32%), Gaps = 23/190 (12%)
Query: 394 EALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENA 453
L Q E + + I + ++ + ++ + R + +LG A
Sbjct: 13 VPLQPTLQQEVILARMEQI--LASRALTDDE------RAQLL--YERGVLYDSLGLRALA 62
Query: 454 VTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSN 513
+A I P EV N G L ++ F A +A+ L DP+
Sbjct: 63 RNDFSQALAIRPDMPEV---FNY---------LGIYLTQAGNFDAAYEAFDSVLELDPTY 110
Query: 514 SVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEV 573
+ + NR + G+ + + +D PN L + KL++ A +
Sbjct: 111 NYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEK-QAKEVLKQ 169
Query: 574 LRRELPDDNE 583
+ +
Sbjct: 170 HFEKSDKEQW 179
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 80.0 bits (198), Expect = 8e-17
Identities = 38/310 (12%), Positives = 73/310 (23%), Gaps = 68/310 (21%)
Query: 283 AAALTGLGRIGEAVKECEEAVR----LDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQ 338
A L + + E+ + D + G L LG AR
Sbjct: 12 AVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDF----S 67
Query: 339 QA---DP--TEVHR-LQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCR 392
QA P EV L + G++ +A D+ + +
Sbjct: 68 QALAIRPDMPEVFNYLGIYLTQA---------GNFDAAYEAFDSVLELDPTY-------- 110
Query: 393 VEA-------LLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEM 445
A L + + A+ L + +P+ + + E
Sbjct: 111 NYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPN--------------DPFRSLWLYLAEQ 156
Query: 446 ALGRFE---NAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQA 502
L + EK+ + V L N + +
Sbjct: 157 KLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGN-------------ISEQTLMERLKAD 203
Query: 503 YGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLE 562
+ S + LG + + A+ + S L
Sbjct: 204 ATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLG 263
Query: 563 KWADAVRDFE 572
+ D + + +
Sbjct: 264 QDQDDLAESD 273
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 78.9 bits (195), Expect = 2e-16
Identities = 32/173 (18%), Positives = 55/173 (31%), Gaps = 17/173 (9%)
Query: 434 AYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKS 493
A Q E+ L R E + D A LL RG
Sbjct: 12 AVPLQPTLQQEVILARMEQIL---ASRALTDDER---AQLLYE---------RGVLYDSL 56
Query: 494 ERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLR 553
A + + L P ++ + G ++ + E + L + P Y A L
Sbjct: 57 GLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLN 116
Query: 554 RAASNSKLEKWADAVRDFE-VLRRELPDDNEIAESLFHAQVSLKKSRGEEVYN 605
R + + A D + + P+D + L+ A+ L + + +EV
Sbjct: 117 RGIALYYGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLK 168
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 108 bits (271), Expect = 3e-26
Identities = 35/324 (10%), Positives = 76/324 (23%), Gaps = 82/324 (25%)
Query: 242 AEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECE- 300
+ R + L++ + EA+ +++K + + + RA L + A K+ E
Sbjct: 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIET 62
Query: 301 --EAVRLDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKC 358
V + G +L++
Sbjct: 63 YFSKVNATKAKSADFEYYGKILMKK----------------------------------- 87
Query: 359 TDARKVGDWKSALREGDAAIAAGADFSPQLSMC---RVEALLKLHQLEDAESSLSNIPKI 415
G A+++ AA+ D A + +
Sbjct: 88 ------GQDSLAIQQYQAAV----DRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP 137
Query: 416 EPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLN 475
+ + + + Q + A ++ K ++ P
Sbjct: 138 TTTD------------PKVF--YELGQAYYYNKEYVKADSSFVKVLELKPNIYIG---YL 180
Query: 476 NVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVL--------YCNRAACWFKL 527
RARA + A Y + + A +
Sbjct: 181 W-----RARAN-AAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTIN 234
Query: 528 GQWERSVEDSNQALLIQPNYTKAL 551
++ L + P KA+
Sbjct: 235 RDKVKADAAWKNILALDPTNKKAI 258
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 90.4 bits (225), Expect = 3e-20
Identities = 21/181 (11%), Positives = 50/181 (27%), Gaps = 29/181 (16%)
Query: 395 ALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAV 454
L K + +A + + + ++ Y + RA L +++ A
Sbjct: 12 FLFKNNNYAEAIEVFNKLEAKKYNS--------------PYIYNRRAVCYYELAKYDLAQ 57
Query: 455 TAAE---KAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDP 511
E G L K + + A Q Y + D
Sbjct: 58 KDIETYFSKVNATKAKSAD---FEY---------YGKILMKKGQDSLAIQQYQAAVDRDT 105
Query: 512 SNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDF 571
+ +Y + ++ G + +++ + + K + +++ A F
Sbjct: 106 TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSF 165
Query: 572 E 572
Sbjct: 166 V 166
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 90.0 bits (224), Expect = 4e-20
Identities = 24/184 (13%), Positives = 58/184 (31%), Gaps = 32/184 (17%)
Query: 395 ALLKLHQLEDAESSLSNIPK---IEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFE 451
+L + + A+ + + S + +I M G+
Sbjct: 46 CYYELAKYDLAQKDIETYFSKVNATKA------------KSADF--EYYGKILMKKGQDS 91
Query: 452 NAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDP 511
A+ + A D +++ G+ + F A Q + +R
Sbjct: 92 LAIQQYQAAVDRDTTRLDM---YGQ---------IGSYFYNKGNFPLAIQYMEKQIRPTT 139
Query: 512 SNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKL---EKWADAV 568
++ ++ ++ ++ ++ + L ++PN L RA +N+ K A
Sbjct: 140 TDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAK 199
Query: 569 RDFE 572
+E
Sbjct: 200 PYYE 203
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 86.2 bits (214), Expect = 7e-19
Identities = 31/312 (9%), Positives = 71/312 (22%), Gaps = 82/312 (26%)
Query: 275 NAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVRLGQVENARRHLC 334
N A L EA++ + N + R L
Sbjct: 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYEL----------- 50
Query: 335 LSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMC--- 391
+ A ++ + + + + S
Sbjct: 51 ------------------------------AKYDLAQKDIETYFSK-VNATKAKSADFEY 79
Query: 392 RVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFE 451
+ L+K Q A + + + Y G F
Sbjct: 80 YGKILMKKGQDSLAIQQYQAAVDRDTT------------RLDMY--GQIGSYFYNKGNFP 125
Query: 452 NAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDP 511
A+ EK + + +V G + ++ + +A ++ + L P
Sbjct: 126 LAIQYMEKQIRPTTTDPKV---FYE---------LGQAYYYNKEYVKADSSFVKVLELKP 173
Query: 512 SNSVLYCNRAACWFKLGQWER---SVEDSNQALLI--------QPNYTKALLRRAASNSK 560
+ + Y RA + + + + + + +A A +
Sbjct: 174 NIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTI 233
Query: 561 LEKWADAVRDFE 572
A ++
Sbjct: 234 NRDKVKADAAWK 245
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 83.9 bits (208), Expect = 5e-18
Identities = 36/315 (11%), Positives = 73/315 (23%), Gaps = 80/315 (25%)
Query: 221 LAVGPENANVNRNRGGICGGDAEELKRMGNELYRKGCFGEALSM---YDKAISLAPRNAA 277
A + + R Y + A Y ++ +A
Sbjct: 30 EAKKYNSPYIYNRRAVC--------------YYELAKYDLAQKDIETYFSKVNATKAKSA 75
Query: 278 FRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVRLGQVENARRHLCLSG 337
L G+ A+++ + AV D + ++GS
Sbjct: 76 DFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNK-------------- 121
Query: 338 QQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALL 397
G++ A++ + I +A
Sbjct: 122 ---------------------------GNFPLAIQYMEKQIRPTTTDPKVFYE-LGQAYY 153
Query: 398 KLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALG---RFENAV 454
+ A+SS + +++P+ Y RA+ A + A
Sbjct: 154 YNKEYVKADSSFVKVLELKPNI------------YIGY--LWRARANAAQDPDTKQGLAK 199
Query: 455 TAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNS 514
EK ++ +L+ + +A A+ L DP+N
Sbjct: 200 PYYEKLIEVCAPGGA----KYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNK 255
Query: 515 VLYCNRAACWFKLGQ 529
Sbjct: 256 KAIDGLKMKLEHHHH 270
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 52.3 bits (126), Expect = 2e-07
Identities = 14/70 (20%), Positives = 25/70 (35%)
Query: 517 YCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRR 576
A FK + ++E N+ + N RRA +L K+ A +D E
Sbjct: 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS 65
Query: 577 ELPDDNEIAE 586
++ +
Sbjct: 66 KVNATKAKSA 75
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127 | Back alignment and structure |
|---|
Score = 103 bits (258), Expect = 3e-26
Identities = 34/124 (27%), Positives = 55/124 (44%), Gaps = 16/124 (12%)
Query: 242 AEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEE 301
A K +GN Y++ F +A YDKAI L P N F +N+AA + E V+ CE+
Sbjct: 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEK 67
Query: 302 AVRLDPN-------YWRAHQRLGSLLVRLGQVENARRHLCLSGQQA-----DPTEVHRLQ 349
AV + +A R G+ + + A + ++ DP V +++
Sbjct: 68 AVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWF----HRSLSEFRDPELVKKVK 123
Query: 350 VVEK 353
+EK
Sbjct: 124 ELEK 127
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127 | Back alignment and structure |
|---|
Score = 101 bits (253), Expect = 1e-25
Identities = 28/130 (21%), Positives = 52/130 (40%), Gaps = 19/130 (14%)
Query: 467 NVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFK 526
+ A+ + GN +K + F +A Y + + DPSN Y N+AA +F+
Sbjct: 4 MTDAAIAEKD---------LGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFE 54
Query: 527 LGQWERSVEDSNQALLIQPN-------YTKALLRRAASNSKLEKWADAVRDFE-VLRREL 578
++ V+ +A+ + KA+ R + K + AV+ F L
Sbjct: 55 EKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSL--SE 112
Query: 579 PDDNEIAESL 588
D E+ + +
Sbjct: 113 FRDPELVKKV 122
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127 | Back alignment and structure |
|---|
Score = 50.7 bits (122), Expect = 7e-08
Identities = 17/78 (21%), Positives = 30/78 (38%), Gaps = 7/78 (8%)
Query: 440 RAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARAR-GNDLFKSERFTE 498
+A + +F V EKA ++ + KL+A+A +R GN K +
Sbjct: 48 KAAVYFEEKKFAECVQFCEKAVEVGRETRA------DYKLIAKAMSRAGNAFQKQNDLSL 101
Query: 499 ACQAYGEGLRFDPSNSVL 516
A Q + L ++
Sbjct: 102 AVQWFHRSLSEFRDPELV 119
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 105 bits (265), Expect = 9e-26
Identities = 37/316 (11%), Positives = 86/316 (27%), Gaps = 86/316 (27%)
Query: 259 GEALSMYDKAISLAPRNAAFRSNRAAALTG----LGRIGEAVKECEEAVRLDPNYWRAHQ 314
G + + + L PR + S G G +A + +A+ + +
Sbjct: 2 GSSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYI 61
Query: 315 RLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREG 374
+LL V + + AL
Sbjct: 62 NFANLL-----------------------------------------SSVNELERALAFY 80
Query: 375 DAAIAAGADFSPQLSMCRVEA-------LLKLHQLEDAESSLSNIPKIEPSTVSSSQTRF 427
D A+ + A + ++A+ +
Sbjct: 81 DKALELDSSA--------ATAYYGAGNVYVVKEMYKEAKDMFEKALRAGME--------- 123
Query: 428 FGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARG 487
+ + ++ + + L + + A+ ++A +++ + E G
Sbjct: 124 ---NGDLF--YMLGTVLVKLEQPKLALPYLQRAVELNENDTEA---RFQ---------FG 166
Query: 488 NDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNY 547
L EA + DP ++ + N + E+++E ++A+ IQP++
Sbjct: 167 MCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDH 226
Query: 548 TKALLRRAASNSKLEK 563
AL +
Sbjct: 227 MLALHAKKLLGHHHHH 242
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 86.8 bits (216), Expect = 3e-19
Identities = 29/207 (14%), Positives = 62/207 (29%), Gaps = 29/207 (14%)
Query: 369 SALREGDAAIAA---GADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQT 425
S+ + G+ + ++ + E A + + +
Sbjct: 3 SSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKE------- 55
Query: 426 RFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARA 485
+ Y A + ++ E A+ +KA ++D
Sbjct: 56 -----DAIPY--INFANLLSSVNELERALAFYDKALELDSSAATA---YYG--------- 96
Query: 486 RGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQP 545
GN E + EA + + LR N L+ KL Q + ++ +A+ +
Sbjct: 97 AGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNE 156
Query: 546 NYTKALLRRAASNSKLEKWADAVRDFE 572
N T+A + + +A+ F
Sbjct: 157 NDTEARFQFGMCLANEGMLDEALSQFA 183
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 84.1 bits (209), Expect = 2e-18
Identities = 23/178 (12%), Positives = 53/178 (29%), Gaps = 26/178 (14%)
Query: 395 ALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAV 454
L +++LE A + +++ S + AY + + + ++ A
Sbjct: 66 LLSSVNELERALAFYDKALELDSS------------AATAY--YGAGNVYVVKEMYKEAK 111
Query: 455 TAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNS 514
EKA + N ++ G L K E+ A + + +++
Sbjct: 112 DMFEKALRAGMENGDL---FYM---------LGTVLVKLEQPKLALPYLQRAVELNENDT 159
Query: 515 VLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFE 572
C G + ++ P + A + + E A+ +
Sbjct: 160 EARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLD 217
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 82.6 bits (205), Expect = 8e-18
Identities = 41/263 (15%), Positives = 81/263 (30%), Gaps = 68/263 (25%)
Query: 225 PENANVNRNRGGICGGDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAA 284
P +++ GG G + +A + KAI +A N A
Sbjct: 16 PRGSHMASMTGGQ----------QMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFAN 65
Query: 285 ALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQA---D 341
L+ + + A+ ++A+ LD + A+ G++ V + A+ ++A
Sbjct: 66 LLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMF----EKALRAG 121
Query: 342 PTEVHRLQVVEKHLSKCTDA--------RKVGDWKSALREGDAAIAAGADFSPQLSMCRV 393
+ D K+ K AL A+ +
Sbjct: 122 M--------------ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEND--------T 159
Query: 394 EA-------LLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMA 446
EA L L++A S + + + +P ++A+ +
Sbjct: 160 EARFQFGMCLANEGMLDEALSQFAAVTEQDPG------------HADAF--YNAGVTYAY 205
Query: 447 LGRFENAVTAAEKAGQIDPRNVE 469
E A+ +KA I P ++
Sbjct: 206 KENREKALEMLDKAIDIQPDHML 228
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 78.3 bits (194), Expect = 2e-16
Identities = 15/78 (19%), Positives = 27/78 (34%)
Query: 248 MGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDP 307
G L +G EALS + P +A N +A++ ++A+ + P
Sbjct: 165 FGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQP 224
Query: 308 NYWRAHQRLGSLLVRLGQ 325
++ A L
Sbjct: 225 DHMLALHAKKLLGHHHHH 242
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336 | Back alignment and structure |
|---|
Score = 104 bits (262), Expect = 1e-24
Identities = 28/141 (19%), Positives = 55/141 (39%), Gaps = 15/141 (10%)
Query: 477 VKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNS---------------VLYCNRA 521
++ + RG FK ++ +A Y + + + S + N A
Sbjct: 144 LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLA 203
Query: 522 ACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDD 581
C KL + ++E N+AL + N K L RR ++ + + A DF+ + + P++
Sbjct: 204 MCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNN 263
Query: 582 NEIAESLFHAQVSLKKSRGEE 602
L Q +++ E
Sbjct: 264 KAAKTQLAVCQQRIRRQLARE 284
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336 | Back alignment and structure |
|---|
Score = 73.0 bits (179), Expect = 4e-14
Identities = 28/140 (20%), Positives = 49/140 (35%), Gaps = 19/140 (13%)
Query: 242 AEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAF---------------RSNRAAAL 286
+ +K G +++G + +AL Y K +S ++F N A
Sbjct: 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCH 206
Query: 287 TGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPT--E 344
L A++ C +A+ LD N + R G + + E AR Q P
Sbjct: 207 LKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADF-QKVLQLYPNNKA 265
Query: 345 VHR-LQVVEKHLSKCTDARK 363
L V ++ + + K
Sbjct: 266 AKTQLAVCQQRIRRQLAREK 285
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336 | Back alignment and structure |
|---|
Score = 44.1 bits (104), Expect = 1e-04
Identities = 19/99 (19%), Positives = 33/99 (33%), Gaps = 18/99 (18%)
Query: 388 LSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMAL 447
L+MC LKL A S + +++ + + R + +A+
Sbjct: 202 LAMC----HLKLQAFSAAIESCNKALELDSNNE------------KGL--SRRGEAHLAV 243
Query: 448 GRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARAR 486
FE A +K Q+ P N L + R +
Sbjct: 244 NDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLA 282
|
| >1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C Length = 245 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 5e-24
Identities = 31/183 (16%), Positives = 74/183 (40%), Gaps = 9/183 (4%)
Query: 525 FKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEI 584
FKL + E S ++ I + R + + +V+++E++ ++ D+N +
Sbjct: 32 FKL-ESEDSDSVAHSKKEILRQMSSPQSRDDKDSKERFSRKMSVQEYELIHKDKEDENCL 90
Query: 585 AESLFHAQVSLKKSRGEEVYNMKFGGEVEEVSSLEQFRAAV--SLPGVSVV-HFKSASNL 641
+ + + ++ + + ++G V E+ S EQF + ++V H
Sbjct: 91 RK---YRRQCMQDMHQKLSFGPRYG-FVYELESGEQFLETIEKEQKITTIVVHIYEDGIK 146
Query: 642 HCKQISPYVETLCGRYPSINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKEIVCPS 701
C ++ + L YP + F K+ + + ++PT +YK G + + +
Sbjct: 147 GCDALNSSLICLAAEYPMVKFCKIKASNTGAGDRF-SSDVLPTLLVYKGGELLSNFISVT 205
Query: 702 RDM 704
+
Sbjct: 206 EQL 208
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 95.7 bits (239), Expect = 1e-22
Identities = 43/278 (15%), Positives = 84/278 (30%), Gaps = 72/278 (25%)
Query: 241 DAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECE 300
+ R+G +LY G + AL+++++A+ P++ A LG + A++ +
Sbjct: 4 AEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGK 63
Query: 301 EAVRLDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTD 360
V P Y + L V L + R
Sbjct: 64 TLVARTPRYLGGYMVLSEAYVALYRQAEDRE----------------------------- 94
Query: 361 ARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEA-------LLKLHQLEDAESSLSNIP 413
R G + AL A + L + + AE+SL
Sbjct: 95 -RGKGYLEQALSVLKDAERVNPRY--------APLHLQRGLVYALLGERDKAEASLKQAL 145
Query: 414 KIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVL 473
+E + E A++ +++GR + A+ KA + P+++++
Sbjct: 146 ALEDT-------------PEIR--SALAELYLSMGRLDEALAQYAKALEQAPKDLDL--- 187
Query: 474 LNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDP 511
+ L + EA +A
Sbjct: 188 RVR---------YASALLLKGKAEEAARAAALEHHHHH 216
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 74.5 bits (184), Expect = 3e-15
Identities = 27/187 (14%), Positives = 54/187 (28%), Gaps = 34/187 (18%)
Query: 395 ALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAY---------TFFVRAQIEM 445
LKL + A + + P Y + E
Sbjct: 48 TQLKLGLVNPALENGKTLVARTPR------------YLGGYMVLSEAYVALYRQAEDRER 95
Query: 446 ALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGE 505
G E A++ + A +++PR + RG +A + +
Sbjct: 96 GKGYLEQALSVLKDAERVNPRYAPL---HLQ---------RGLVYALLGERDKAEASLKQ 143
Query: 506 GLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWA 565
L + + A + +G+ + ++ +AL P +R A++ K
Sbjct: 144 ALALED-TPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAE 202
Query: 566 DAVRDFE 572
+A R
Sbjct: 203 EAARAAA 209
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 73.3 bits (181), Expect = 7e-15
Identities = 21/109 (19%), Positives = 38/109 (34%), Gaps = 4/109 (3%)
Query: 221 LAVGPENANVNRNRGGICGGDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRS 280
+A P ++ + KG +ALS+ A + PR A
Sbjct: 66 VARTPRYLGGYMVLSEAY---VALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHL 122
Query: 281 NRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVRLGQVENA 329
R LG +A ++A+ L+ L L + +G+++ A
Sbjct: 123 QRGLVYALLGERDKAEASLKQALALEDTPE-IRSALAELYLSMGRLDEA 170
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 70.6 bits (174), Expect = 6e-14
Identities = 28/180 (15%), Positives = 57/180 (31%), Gaps = 20/180 (11%)
Query: 395 ALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAV 454
L L + + A + K P EA + A+ ++ LG A+
Sbjct: 14 QLYALGRYDAALTLFERALKENPQ------------DPEAL--YWLARTQLKLGLVNPAL 59
Query: 455 TAAEKAGQIDPRNVEVAVLLNN--VKLVARARARGNDLFKSERFTEACQAYGEGLRFDPS 512
+ PR + VA R + +A + R +P
Sbjct: 60 ENGKTLVARTPRYLGG---YMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR 116
Query: 513 NSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFE 572
+ L+ R + LG+ +++ QAL ++ + A + + +A+ +
Sbjct: 117 YAPLHLQRGLVYALLGERDKAEASLKQALALEDTP-EIRSALAELYLSMGRLDEALAQYA 175
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 62.9 bits (154), Expect = 2e-11
Identities = 16/61 (26%), Positives = 25/61 (40%)
Query: 248 MGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDP 307
+ G EAL+ Y KA+ AP++ R A+AL G+ EA +
Sbjct: 157 LAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEHHHHH 216
Query: 308 N 308
+
Sbjct: 217 H 217
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 55.2 bits (134), Expect = 1e-08
Identities = 13/65 (20%), Positives = 23/65 (35%)
Query: 486 RGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQP 545
G L+ R+ A + L+ +P + A KLG ++E+ + P
Sbjct: 11 LGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTP 70
Query: 546 NYTKA 550
Y
Sbjct: 71 RYLGG 75
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 44.4 bits (106), Expect = 4e-05
Identities = 17/112 (15%), Positives = 39/112 (34%), Gaps = 7/112 (6%)
Query: 517 YCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFE-VLR 575
+ LG+++ ++ +AL P +AL A + KL A+ + + ++
Sbjct: 8 PLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVA 67
Query: 576 RELPDDNEIAESLFHAQVSLKKSRGEEVYNMKFGGEVEEVSSLEQFRAAVSL 627
R P + + + G +E+ +L + A +
Sbjct: 68 RT-PRY---LGGYMVLSEAYVALYRQAEDRERGKGYLEQ--ALSVLKDAERV 113
|
| >1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1 Length = 107 | Back alignment and structure |
|---|
Score = 92.0 bits (229), Expect = 2e-22
Identities = 28/107 (26%), Positives = 51/107 (47%), Gaps = 10/107 (9%)
Query: 612 VEEVSSLEQFRAAVSLPG--VSVVHFKSAS----NLHCKQISPYVETLCGRYPSINFLKV 665
V+ V S F+ +S G ++VV F + C +I+P ++ +YP FL+V
Sbjct: 3 VKPVGSDPDFQPELSGAGSRLAVVKF-TMRGCGP---CLRIAPAFSSMSNKYPQAVFLEV 58
Query: 666 DIDESPGVAHAENVRIVPTFKIYKNGSRMKEIVCPSRDMLEHSVRHY 712
D+ + G A N+ PTF+ ++N R+ + LE ++ +
Sbjct: 59 DVHQCQGTAATNNISATPTFQFFRNKVRIDQYQGADAVGLEEKIKQH 105
|
| >3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C* Length = 116 | Back alignment and structure |
|---|
Score = 91.2 bits (227), Expect = 3e-22
Identities = 32/109 (29%), Positives = 58/109 (53%), Gaps = 10/109 (9%)
Query: 610 GEVEEVSSLEQFRAAVSLPG--VSVVHFKSAS----NLHCKQISPYVETLCGRYPSINFL 663
G V+++ S F+ A+ G + VV F SA+ K I P+ +L +Y ++ FL
Sbjct: 11 GSVKQIESKTAFQEALDAAGDKLVVVDF-SATWCGP---SKMIKPFFHSLSEKYSNVIFL 66
Query: 664 KVDIDESPGVAHAENVRIVPTFKIYKNGSRMKEIVCPSRDMLEHSVRHY 712
+VD+D+ VA V+ +PTF+ +K G ++ E +++ LE ++
Sbjct: 67 EVDVDDCQDVASECEVKSMPTFQFFKKGQKVGEFSGANKEKLEATINEL 115
|
| >2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6 Length = 217 | Back alignment and structure |
|---|
Score = 93.9 bits (233), Expect = 6e-22
Identities = 26/180 (14%), Positives = 64/180 (35%), Gaps = 10/180 (5%)
Query: 532 RSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAESLFHA 591
R + ++ P K +LR+ +S + R + + + +
Sbjct: 17 RKFKLESEDGDSIPPSKKEILRQMSSPQSRDDKDSKERMSRKMSIQEYELIHQDKEDEGC 76
Query: 592 QVSLKKSRGEEV-----YNMKFGGEVEEVSSLEQFRAAV--SLPGVSV-VHFKSASNLHC 643
++ +++ + ++G V E+ + EQF + ++ V+ C
Sbjct: 77 LRKYRRQCMQDMHQKLSFGPRYG-FVYELETGEQFLETIEKEQKVTTIVVNIYEDGVRGC 135
Query: 644 KQISPYVETLCGRYPSINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKEIVCPSRD 703
++ +E L YP + F K+ + + ++PT +YK G + + +
Sbjct: 136 DALNSSLECLAAEYPMVKFCKIRASNTGAGDRF-SSDVLPTLLVYKGGELISNFISVAEQ 194
|
| >3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ... Length = 105 | Back alignment and structure |
|---|
Score = 88.9 bits (221), Expect = 2e-21
Identities = 32/107 (29%), Positives = 58/107 (54%), Gaps = 10/107 (9%)
Query: 612 VEEVSSLEQFRAAVSLPG--VSVVHFKSAS----NLHCKQISPYVETLCGRYPSINFLKV 665
V+++ S F+ A+ G + VV F SA+ CK I P+ +L +Y ++ FL+V
Sbjct: 2 VKQIESKTAFQEALDAAGDKLVVVDF-SATWCGP---CKMIKPFFHSLSEKYSNVIFLEV 57
Query: 666 DIDESPGVAHAENVRIVPTFKIYKNGSRMKEIVCPSRDMLEHSVRHY 712
D+D+ VA V+ +PTF+ +K G ++ E +++ LE ++
Sbjct: 58 DVDDCQDVASESEVKSMPTFQFFKKGQKVGEFSGANKEKLEATINEL 104
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 97.4 bits (242), Expect = 2e-21
Identities = 42/338 (12%), Positives = 87/338 (25%), Gaps = 55/338 (16%)
Query: 242 AEELKRMGNELYRKGCFGEALSMYDKAISLAP--RNAAFRSNRAAALTGL-----GRIGE 294
+++ R + L + R++ F ++ + +
Sbjct: 27 GQQMGRGSMMADEEEEAKHVLQKLQGLVDRLYCFRDSYFETHSVEDAGRKQQDVQEEMEK 86
Query: 295 AVKECEEAVRLDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKH 354
+++ EE + +A G L
Sbjct: 87 TLQQMEEVLGSAQVEAQALMLKGKALNVTPDYS--------------------------- 119
Query: 355 LSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPK 414
A A+ + + E K + A + S
Sbjct: 120 -------------PEAEVLLSKAVKLEPEL-VEAWNQLGEVYWKKGDVTSAHTCFSGALT 165
Query: 415 IEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLL 474
+ VS LS + ++V A+ A Q+D + +L
Sbjct: 166 HCKNKVSLQN------LSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYIL 219
Query: 475 NNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSV 534
N ++ G + S++ A + R SN L+ NRA + ++
Sbjct: 220 GNA-YLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEAL 278
Query: 535 EDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFE 572
E +QA + P + + R L + +
Sbjct: 279 EGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKG 316
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 94.7 bits (235), Expect = 1e-20
Identities = 42/322 (13%), Positives = 92/322 (28%), Gaps = 73/322 (22%)
Query: 241 DAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGR-IGEAVKEC 299
E+ R ++ + + L ++ + A A + AL EA
Sbjct: 69 SVEDAGRKQQDVQEE--MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLL 126
Query: 300 EEAVRLDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCT 359
+AV+L+P A +LG + + G V +A L+ C
Sbjct: 127 SKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCF------------------SGALTHCK 168
Query: 360 DARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPST 419
+ + + LR+ + + D+ +++
Sbjct: 169 NKVSLQNLSMVLRQ----------------LQTDSGDEHSRHVMDSVRQAKLAVQMDV-- 210
Query: 420 VSSSQTRFFGMLSEAY---------TFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEV 470
+ ++ +F Q + A++A +A ++D +
Sbjct: 211 ----------LDGRSWYILGNAYLSLYFNTGQ---NPKISQQALSAYAQAEKVDRKASSN 257
Query: 471 AVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQW 530
L N R E + EA + + + DP+ L +
Sbjct: 258 PDLHLN---------RATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRL 308
Query: 531 ERSVEDSNQALLIQPNYTKALL 552
+E + +P +++L
Sbjct: 309 TSLLESKGK---TKPKKLQSML 327
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 70.4 bits (172), Expect = 8e-13
Identities = 24/114 (21%), Positives = 38/114 (33%), Gaps = 9/114 (7%)
Query: 219 GSLAVGPENANVNRNRGGICGGDAEELKRMGNELYRKGCFGEALSMYDKAISL---APRN 275
++ + + G G +ALS Y +A + A N
Sbjct: 204 LAVQMDVLDGRSWYILGNAY---LSLYFNTGQNPKI---SQQALSAYAQAEKVDRKASSN 257
Query: 276 AAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVRLGQVENA 329
NRA GEA++ +A LDP + QR LL L ++ +
Sbjct: 258 PDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSL 311
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 65.0 bits (158), Expect = 3e-11
Identities = 58/391 (14%), Positives = 111/391 (28%), Gaps = 68/391 (17%)
Query: 279 RSNRAAALTG---LGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVRLGQVENARRHLCL 335
R + A++TG +GR E EEA + RL + +
Sbjct: 17 RGSHMASMTGGQQMGRGSMMADEEEEAKHVLQKLQGLVDRLYCFRDSYFETHSV------ 70
Query: 336 SGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEA 395
E K D ++ + + L++ + + + Q M + +A
Sbjct: 71 ----------------EDAGRKQQDVQE--EMEKTLQQMEEVLGSAQVE-AQALMLKGKA 111
Query: 396 LLKL-HQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAV 454
L +AE LS K+EP L EA+ ++ G +A
Sbjct: 112 LNVTPDYSPEAEVLLSKAVKLEPE------------LVEAW--NQLGEVYWKKGDVTSAH 157
Query: 455 TAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNS 514
T A V L N+ +V R + S ++ + ++ D +
Sbjct: 158 TCFSGALTHCKN----KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDG 213
Query: 515 VLYCNRAACWF--------KLGQWERSVEDSNQALLIQ---PNYTKALLRRAASNSKLEK 563
+ + ++++ QA + + L RA + E
Sbjct: 214 RSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEES 273
Query: 564 WADAVRDFEVLRRELPDDNEIAESLFHAQVSLKKSRGEEVYNMKFGGEVEEVSSLEQFRA 623
+ +A+ F P E + L + +E + +
Sbjct: 274 YGEALEGFSQAAALDPAWPEPQQREQQLLEFLS----------RLTSLLESKGKTKPKKL 323
Query: 624 AVSLPGVSVVHFKSASNLHCKQISPYVETLC 654
L + H + + S TL
Sbjct: 324 QSMLGSLRPAHLGPCGDGRYQSASGQKMTLE 354
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477 | Back alignment and structure |
|---|
Score = 95.1 bits (237), Expect = 8e-21
Identities = 32/121 (26%), Positives = 61/121 (50%)
Query: 484 RARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLI 543
+ + ND FK++ + A + Y + + +PSN++ Y NR+ + + + ++ D+ +A+ +
Sbjct: 10 KTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL 69
Query: 544 QPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAESLFHAQVSLKKSRGEEV 603
Y K RRAASN L K+ A+RD+E + + P D + +K+ E
Sbjct: 70 DKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERA 129
Query: 604 Y 604
Sbjct: 130 I 130
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477 | Back alignment and structure |
|---|
Score = 87.0 bits (216), Expect = 3e-18
Identities = 39/175 (22%), Positives = 71/175 (40%), Gaps = 15/175 (8%)
Query: 242 AEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEE 301
AEELK N+ ++ + A+ Y +AI L P NA + NR+ A G A+ +
Sbjct: 6 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATR 65
Query: 302 AVRLDPNYWRAHQRLGSLLVRLGQVENARRHL--CLSGQQADPTEVHRLQVVEKHLSKC- 358
A+ LD Y + + R + + LG+ A R + + D + Q K + +
Sbjct: 66 AIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKA 125
Query: 359 -TDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNI 412
A + K ++ + S + +E +LED + ++S +
Sbjct: 126 FERAIAGDEHKRSVVD-----------SLDIESMTIEDEYSGPKLEDGKVTISFM 169
|
| >3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A Length = 139 | Back alignment and structure |
|---|
Score = 87.9 bits (218), Expect = 9e-21
Identities = 27/112 (24%), Positives = 53/112 (47%), Gaps = 12/112 (10%)
Query: 609 GGEVEEVSSLEQFRAAVSLPGVS----VVHFKSAS----NLHCKQISPYVETLCGRYPSI 660
GG V +++ E++ +S + +F SA +QI+PY L YPS+
Sbjct: 23 GGNVHLITTKERWDQKLSEASRDGKIVLANF-SARWCGP---SRQIAPYYIELSENYPSL 78
Query: 661 NFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKEIVCPSRDMLEHSVRHY 712
FL +D+DE + + ++ PTF ++G ++ ++V ++ L +
Sbjct: 79 MFLVIDVDELSDFSASWEIKATPTFFFLRDGQQVDKLVGANKPELHKKITAI 130
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 89.4 bits (222), Expect = 2e-20
Identities = 28/212 (13%), Positives = 64/212 (30%), Gaps = 22/212 (10%)
Query: 392 RVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMA----- 446
+V A ++ Q A S + ++ ++ + + + E+A
Sbjct: 10 KVSAAIEAGQNGQAVSYFRQTIALNID---RTEMYYWTNVDKNSEISSKLATELALAYKK 66
Query: 447 LGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEG 506
++ A ++ Q P NV+ L + +A + Y +
Sbjct: 67 NRNYDKAYLFYKELLQKAPNNVDC---LEA---------CAEMQVCRGQEKDALRMYEKI 114
Query: 507 LRFDPSNSVLYCNRAACWFKLGQWER-SVEDSNQALLIQPNYTKALLRRAASNSKLEKWA 565
L+ + N ++ + E+ +E + L A R S ++
Sbjct: 115 LQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYE 174
Query: 566 DAVRDFEVLRRELPDDNEIAESLFHAQVSLKK 597
A + + P E ++L K+
Sbjct: 175 KARNSLQKVILRFPST-EAQKTLDKILRIEKE 205
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 80.2 bits (198), Expect = 3e-17
Identities = 31/215 (14%), Positives = 67/215 (31%), Gaps = 42/215 (19%)
Query: 349 QVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADF---------------SPQLSMCRV 393
Q V++ L K + A + G A+ IA D S +L+
Sbjct: 2 QSVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELA 61
Query: 394 EALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENA 453
A K + A + + P+ V + A++++ G+ ++A
Sbjct: 62 LAYKKNRNYDKAYLFYKELLQKAPNNV------------DCL--EACAEMQVCRGQEKDA 107
Query: 454 VTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLF-KSERFTEACQAYGEGLRFDPS 512
+ EK Q++ N+ GN + +E+ + + + L
Sbjct: 108 LRMYEKILQLEADNLAA---NIF---------LGNYYYLTAEQEKKKLETDYKKLSSPTK 155
Query: 513 NSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNY 547
++E++ + +L P+
Sbjct: 156 MQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 77.9 bits (192), Expect = 1e-16
Identities = 16/111 (14%), Positives = 40/111 (36%), Gaps = 2/111 (1%)
Query: 221 LAVGPENANV--NRNRGGICGGDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAF 278
+A+ + + N ++ + + + +A Y + + AP N
Sbjct: 31 IALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDC 90
Query: 279 RSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVRLGQVENA 329
A G+ +A++ E+ ++L+ + A+ LG+ + E
Sbjct: 91 LEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKK 141
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 75.9 bits (187), Expect = 8e-16
Identities = 17/105 (16%), Positives = 35/105 (33%), Gaps = 16/105 (15%)
Query: 241 DAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNA----------------AFRSNRAA 284
+E+ + + G G+A+S + + I+L + A
Sbjct: 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELAL 62
Query: 285 ALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVRLGQVENA 329
A +A +E ++ PN + + V GQ ++A
Sbjct: 63 AYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDA 107
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 74.0 bits (182), Expect = 4e-15
Identities = 17/94 (18%), Positives = 32/94 (34%), Gaps = 1/94 (1%)
Query: 241 DAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLG-RIGEAVKEC 299
+ + L+ +G +AL MY+K + L N A + + ++
Sbjct: 87 NVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETD 146
Query: 300 EEAVRLDPNYWRAHQRLGSLLVRLGQVENARRHL 333
+ + A R G + + E AR L
Sbjct: 147 YKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSL 180
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 67.1 bits (164), Expect = 7e-13
Identities = 17/109 (15%), Positives = 32/109 (29%), Gaps = 16/109 (14%)
Query: 220 SLAVGPENANVNRNRGGICGGDAEELKRMGNELYRKGC-FGEALSMYDKAISLAPRNAAF 278
L + +N N +GN Y + L K +S +
Sbjct: 114 ILQLEADNLAANIF--------------LGNYYYLTAEQEKKKLETDYKKLSSPTKMQYA 159
Query: 279 RSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVRLGQVE 327
R + R +A ++ + P+ A + L +L +V
Sbjct: 160 RYRDGLSKLFTTRYEKARNSLQKVILRFPST-EAQKTLDKILRIEKEVN 207
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 85.8 bits (213), Expect = 2e-20
Identities = 20/102 (19%), Positives = 32/102 (31%), Gaps = 4/102 (3%)
Query: 260 EALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSL 319
+ ++ N R + A+ A+ DP Y A + LG
Sbjct: 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKT 62
Query: 320 LVRLGQVENA----RRHLCLSGQQADPTEVHRLQVVEKHLSK 357
L G A L + + D V LQV + L++
Sbjct: 63 LQGQGDRAGARQAWESGLAAAQSRGDQQVVKELQVFLRRLAR 104
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 70.4 bits (173), Expect = 6e-15
Identities = 20/114 (17%), Positives = 32/114 (28%), Gaps = 16/114 (14%)
Query: 221 LAVGPENANVNRNRGGICGGDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRS 280
LA G +N + +G F AL A+ P +
Sbjct: 12 LAQGTDNMLLRFT--------------LGKTYAEHEQFDAALPHLRAALDFDPTYSVAWK 57
Query: 281 NRAAALTGLGRIGEAVKECEEAVRLDPNY--WRAHQRLGSLLVRLGQVENARRH 332
L G G A + E + + + + L L RL + + H
Sbjct: 58 WLGKTLQGQGDRAGARQAWESGLAAAQSRGDQQVVKELQVFLRRLAREDALEHH 111
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 1e-08
Identities = 22/142 (15%), Positives = 34/142 (23%), Gaps = 29/142 (20%)
Query: 451 ENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFD 510
+ E N +L G + E+F A L FD
Sbjct: 2 QAITERLEAMLAQGTDN---MLLRFT---------LGKTYAEHEQFDAALPHLRAALDFD 49
Query: 511 PSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRD 570
P+ SV + G + + L + V++
Sbjct: 50 PTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSRGD---------------QQVVKE 94
Query: 571 FEVLRRELPDDNEIAESLFHAQ 592
+V R L E A H
Sbjct: 95 LQVFLRRL--AREDALEHHHHH 114
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 7e-05
Identities = 15/80 (18%), Positives = 20/80 (25%), Gaps = 12/80 (15%)
Query: 434 AYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKS 493
F + +F+ A+ A DP L G L
Sbjct: 19 MLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWL------------GKTLQGQ 66
Query: 494 ERFTEACQAYGEGLRFDPSN 513
A QA+ GL S
Sbjct: 67 GDRAGARQAWESGLAAAQSR 86
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338 | Back alignment and structure |
|---|
Score = 92.0 bits (228), Expect = 2e-20
Identities = 34/140 (24%), Positives = 55/140 (39%), Gaps = 17/140 (12%)
Query: 480 VARARARGNDLFKSERFTEACQAYGEGLRFDPSNSV-----------------LYCNRAA 522
R + GN LFK E+ EA Q Y + + + + + N AA
Sbjct: 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAA 238
Query: 523 CWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDN 582
C KL +++ ++ N L + KAL RR + ++L + A DF ++ PDD
Sbjct: 239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDK 298
Query: 583 EIAESLFHAQVSLKKSRGEE 602
I L K ++
Sbjct: 299 AIRRELRALAEQEKALYQKQ 318
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338 | Back alignment and structure |
|---|
Score = 64.3 bits (156), Expect = 3e-11
Identities = 33/142 (23%), Positives = 55/142 (38%), Gaps = 21/142 (14%)
Query: 242 AEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFR-----------------SNRAA 284
A+ K GN L+++ EA+ Y+ AI+ + F+ N AA
Sbjct: 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAA 238
Query: 285 ALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPT- 343
L L R EA+ C + + +A R G LGQ+++AR Q+ P
Sbjct: 239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDF-RKAQKYAPDD 297
Query: 344 -EVHR-LQVVEKHLSKCTDARK 363
+ R L+ + + +K
Sbjct: 298 KAIRRELRALAEQEKALYQKQK 319
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338 | Back alignment and structure |
|---|
Score = 45.4 bits (107), Expect = 4e-05
Identities = 17/99 (17%), Positives = 37/99 (37%), Gaps = 18/99 (18%)
Query: 388 LSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMAL 447
++ C L+KL + ++A + + E +A F R + + L
Sbjct: 236 IAAC----LIKLKRYDEAIGHCNIVLTEEEKNP------------KAL--FRRGKAKAEL 277
Query: 448 GRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARAR 486
G+ ++A KA + P + + L + +A +
Sbjct: 278 GQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQ 316
|
| >2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A Length = 114 | Back alignment and structure |
|---|
Score = 85.8 bits (213), Expect = 2e-20
Identities = 28/103 (27%), Positives = 52/103 (50%), Gaps = 8/103 (7%)
Query: 600 GEEVYNMKFGGEVEEVSSLEQFRAAVSLPGVSVVHFKSAS----NLHCKQISPYVETLCG 655
G ++ + ++++L +FR + V+ F A+ CK + P++ L
Sbjct: 2 GHHHHHHSSYTSITKLTNLTEFRNLIKQNDKLVIDF-YATWCGP---CKMMQPHLTKLIQ 57
Query: 656 RYPSINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKEIV 698
YP + F+K D+DESP +A V +PTF + K+G + +I+
Sbjct: 58 AYPDVRFVKCDVDESPDIAKECEVTAMPTFVLGKDGQLIGKII 100
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 93.1 bits (231), Expect = 4e-20
Identities = 51/335 (15%), Positives = 98/335 (29%), Gaps = 60/335 (17%)
Query: 241 DAEELKRMGNELYRKGCFG---EALSMYDKAISLAPRNAAFRSNRAAALTGL----GRIG 293
+ E + YR + A+ +AI L P N + A L + G
Sbjct: 171 NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEG 230
Query: 294 EAVKECEEAVRLDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQA---DPT--EVH-- 346
E K EEA+ P + R + + A L ++A P +H
Sbjct: 231 EGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELL----KKALEYIPNNAYLHCQ 286
Query: 347 --------RLQVVEKHLSKCTDARKVGDW-KSALREGDAAIAAGADFSPQLSMCRVEALL 397
QV+ + RK+ + A+ A A + S+
Sbjct: 287 IGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSI-LASLHA 345
Query: 398 KLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAA 457
Q E+AE E + + + Q + + A+
Sbjct: 346 LADQYEEAEYYFQKEFSKELT---------PVAKQLLHLRYGNFQ-LYQMKCEDKAIHHF 395
Query: 458 EKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLY 517
+ +I+ ++ E + + ++ +A+ R L + ++S
Sbjct: 396 IEGVKINQKSREKEKMKDKLQKIAKMR----------------------LSKNGADSEAL 433
Query: 518 CNRAACWFKLGQWERSVEDSNQALLIQPNYTKALL 552
A + +++ EDS + L A
Sbjct: 434 HVLAFLQELNEKMQQADEDSERGLESGSLIPSASS 468
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 81.9 bits (202), Expect = 2e-16
Identities = 51/328 (15%), Positives = 96/328 (29%), Gaps = 43/328 (13%)
Query: 288 GLGRIGEAVKECEEAVRL------DPNYWRAHQRLGSLLVRLGQVENARRHL--CLSGQQ 339
L ++ + E+ V L L GQ E A L Q
Sbjct: 23 NLMEGENSLDDFEDKVFYRTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQ 82
Query: 340 ADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVE----- 394
+ + ++ + + +G D FS + E
Sbjct: 83 QEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEE 142
Query: 395 --ALLKLH--QLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEM-ALGR 449
LK Q E A+ + +P E + A +
Sbjct: 143 GWTRLKCGGNQNERAKVCFEKALEKKPKNP------------EFTSGLAIASYRLDNWPP 190
Query: 450 FENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRF 509
+NA+ +A +++P N + VLL A + E E + E L
Sbjct: 191 SQNAIDPLRQAIRLNPDNQYLKVLL--------ALKLHKMREEGEEEGEGEKLVEEALEK 242
Query: 510 DPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVR 569
P + + + A + + + ++++E +AL PN + +R
Sbjct: 243 APGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLR 302
Query: 570 DFEVLRRELPDDNEIAESLFHAQVSLKK 597
+ + + ++ E + HA LKK
Sbjct: 303 ENGMYGKR-----KLLELIGHAVAHLKK 325
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 78.4 bits (193), Expect = 2e-15
Identities = 48/389 (12%), Positives = 107/389 (27%), Gaps = 90/389 (23%)
Query: 248 MGNELYRKGCFGEALSMYDKAISLA---------PRNAAFRSNRAAALTGLGRIGEAVKE 298
+ + KG AL KA L R+ N A +GR+ +
Sbjct: 57 LAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIY 116
Query: 299 CEEAVRLDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKC 358
++ + + ++ L E L G Q +
Sbjct: 117 VDKVKHVCEKFSSPYRIESPEL----DCEEGWTRLKCGGNQNE----------------- 155
Query: 359 TDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPK---I 415
A K + A+ P+ + A +L +++++ + + +
Sbjct: 156 -RA------KVCFEK---ALEKKPKN-PEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRL 204
Query: 416 EPSTVSSSQTRFFGMLSEAYTF--FVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVL 473
P ++ E+A + P +V
Sbjct: 205 NPD------------NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDV--- 249
Query: 474 LNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFK------- 526
L + + + +A + + L + P+N+ L+C C+
Sbjct: 250 LRSA---------AKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMN 300
Query: 527 ------------LGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFE-V 573
L +V +A N + A+ ++ +++ +A F+
Sbjct: 301 LRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKE 360
Query: 574 LRRELPDDNEIAESLFHAQVSLKKSRGEE 602
+EL + L + L + + E+
Sbjct: 361 FSKELTPVAKQLLHLRYGNFQLYQMKCED 389
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 57.6 bits (139), Expect = 7e-09
Identities = 18/121 (14%), Positives = 35/121 (28%), Gaps = 9/121 (7%)
Query: 221 LAVGPENANVNRNRGGICGGDAEELKRMGNELYR-----KGCFGEALSMYDKAISLAPRN 275
L P NA ++ G ++ + G A++ KA
Sbjct: 274 LEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNL 333
Query: 276 AAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRA---HQRLGSLLV-RLGQVENARR 331
S A+ + EA ++ + H R G+ + ++ + A
Sbjct: 334 FRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIH 393
Query: 332 H 332
H
Sbjct: 394 H 394
|
| >2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A Length = 118 | Back alignment and structure |
|---|
Score = 85.1 bits (211), Expect = 5e-20
Identities = 29/111 (26%), Positives = 51/111 (45%), Gaps = 12/111 (10%)
Query: 610 GEVEEVSSLEQFRAAVSLPGVS----VVHFKSAS----NLHCKQISPYVETLCGRYPSIN 661
G V + ++F ++ + ++ F +AS C+ I+P ++P
Sbjct: 6 GAVIACHTKQEFDTHMANGKDTGKLVIIDF-TASWCGP---CRVIAPVFAEYAKKFPGAI 61
Query: 662 FLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKEIVCPSRDMLEHSVRHY 712
FLKVD+DE VA A NV +PTF K+G ++ +V +D + +
Sbjct: 62 FLKVDVDELKDVAEAYNVEAMPTFLFIKDGEKVDSVVGGRKDDIHTKIVAL 112
|
| >2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A* Length = 122 | Back alignment and structure |
|---|
Score = 84.7 bits (210), Expect = 9e-20
Identities = 33/113 (29%), Positives = 53/113 (46%), Gaps = 12/113 (10%)
Query: 609 GGEVEEVSSLEQF----RAAVSLPGVSVVHFKSAS----NLHCKQISPYVETLCGRYPSI 660
EV V SLEQ+ A + + V+ F +AS C+ ++P L ++P+
Sbjct: 11 AAEVISVHSLEQWTMQIEEANTAKKLVVIDF-TASWCGP---CRIMAPVFADLAKKFPNA 66
Query: 661 NFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKEIVCPSRDMLEHSVRHYS 713
FLKVD+DE +A +V +PTF K G +V ++ L V ++
Sbjct: 67 VFLKVDVDELKPIAEQFSVEAMPTFLFMKEGDVKDRVVGAIKEELTAKVGLHA 119
|
| >1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1 Length = 112 | Back alignment and structure |
|---|
Score = 83.9 bits (208), Expect = 1e-19
Identities = 34/106 (32%), Positives = 57/106 (53%), Gaps = 8/106 (7%)
Query: 612 VEEVSSLEQFRAAVSLPGVSVVHFKSAS----NLHCKQISPYVETLCGRYPSINFLKVDI 667
V+ V+S +F + +S + +V F A CK+I+P+ E Y + F+KVD+
Sbjct: 10 VKIVTSQAEFDSIISQNELVIVDF-FAEWCGP---CKRIAPFYEECSKTYTKMVFIKVDV 65
Query: 668 DESPGVAHAENVRIVPTFKIYKNGSRMKEIVCPSRDMLEHSVRHYS 713
DE V EN+ +PTFK+YKNGS + ++ + L+ + Y+
Sbjct: 66 DEVSEVTEKENITSMPTFKVYKNGSSVDTLLGANDSALKQLIEKYA 111
|
| >1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1 Length = 124 | Back alignment and structure |
|---|
Score = 84.4 bits (209), Expect = 1e-19
Identities = 32/113 (28%), Positives = 57/113 (50%), Gaps = 13/113 (11%)
Query: 610 GEVEEVSSLEQF----RAAVSLPGVSVVHFKSAS----NLHCKQISPYVETLCGRYPSIN 661
G+V ++E + + A + VV F +AS C+ I+P+ L + P++
Sbjct: 16 GQVIACHTVETWNEQLQKANESKTLVVVDF-TASWCGP---CRFIAPFFADLAKKLPNVL 71
Query: 662 FLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKEIVCPSRDMLEHSV-RHYS 713
FLKVD DE VA ++ +PTF K G + ++V +D L+ ++ +H +
Sbjct: 72 FLKVDTDELKSVASDWAIQAMPTFMFLKEGKILDKVVGAKKDELQSTIAKHLA 124
|
| >1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1 Length = 113 | Back alignment and structure |
|---|
Score = 83.5 bits (207), Expect = 1e-19
Identities = 34/112 (30%), Positives = 53/112 (47%), Gaps = 12/112 (10%)
Query: 610 GEVEEVSSLE----QFRAAVSLPGVSVVHFKSAS----NLHCKQISPYVETLCGRYPSIN 661
G+V +++ F + VV F +AS CK I+P L ++P++
Sbjct: 4 GQVIACHTVDTWKEHFEKGKGSQKLIVVDF-TASWCPP---CKMIAPIFAELAKKFPNVT 59
Query: 662 FLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKEIVCPSRDMLEHSVRHYS 713
FLKVD+DE VA NV +PTF K+G + + V +D L V ++
Sbjct: 60 FLKVDVDELKAVAEEWNVEAMPTFIFLKDGKLVDKTVGADKDGLPTLVAKHA 111
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 84.0 bits (208), Expect = 2e-19
Identities = 18/93 (19%), Positives = 35/93 (37%)
Query: 241 DAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECE 300
E+L +G Y+ G + +A ++ L +A + A LG +A++
Sbjct: 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYS 76
Query: 301 EAVRLDPNYWRAHQRLGSLLVRLGQVENARRHL 333
+D N R ++LG ++ A
Sbjct: 77 YGALMDINEPRFPFHAAECHLQLGDLDGAESGF 109
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 75.2 bits (185), Expect = 3e-16
Identities = 19/139 (13%), Positives = 44/139 (31%), Gaps = 12/139 (8%)
Query: 459 KAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYC 518
+ +E A G + +++ ++ +A + + D ++ +
Sbjct: 9 MLRGLSEDTLEQL------------YALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFL 56
Query: 519 NRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRREL 578
AC LG +E++++ + L+ N + A + +L A F R
Sbjct: 57 GLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALA 116
Query: 579 PDDNEIAESLFHAQVSLKK 597
A L+
Sbjct: 117 AAQPAHEALAARAGAMLEA 135
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 67.8 bits (166), Expect = 1e-13
Identities = 18/134 (13%), Positives = 38/134 (28%), Gaps = 15/134 (11%)
Query: 433 EAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFK 492
+ + G++++A + +D + G
Sbjct: 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARY---FLG---------LGACRQS 64
Query: 493 SERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLI---QPNYTK 549
+ +A Q+Y G D + + A C +LG + + A + QP +
Sbjct: 65 LGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEA 124
Query: 550 ALLRRAASNSKLEK 563
R A +
Sbjct: 125 LAARAGAMLEAVTA 138
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 62.1 bits (151), Expect = 1e-11
Identities = 15/81 (18%), Positives = 25/81 (30%), Gaps = 3/81 (3%)
Query: 248 MGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDP 307
+G G + +AL Y + F + A LG + A A L
Sbjct: 58 LGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAA 117
Query: 308 N---YWRAHQRLGSLLVRLGQ 325
+ R G++L +
Sbjct: 118 AQPAHEALAARAGAMLEAVTA 138
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 52.1 bits (125), Expect = 3e-08
Identities = 13/65 (20%), Positives = 18/65 (27%)
Query: 265 YDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVRLG 324
L+ G+ +A K + LD R LG+ LG
Sbjct: 7 LAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLG 66
Query: 325 QVENA 329
E A
Sbjct: 67 LYEQA 71
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 2e-06
Identities = 13/126 (10%), Positives = 35/126 (27%), Gaps = 16/126 (12%)
Query: 502 AYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKL 561
++ G+W+ + + ++ + L A L
Sbjct: 6 TLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSL 65
Query: 562 EKWADAVRDFEVLRRELPDDNEIAESLFHAQVSLKKSRGEEVYNMKFGGEVEEVSSLEQF 621
+ A++ + ++ FHA + G+++ + F
Sbjct: 66 GLYEQALQSYSYGALMDINE---PRFPFHAAECHLQL-----------GDLDG--AESGF 109
Query: 622 RAAVSL 627
+A +L
Sbjct: 110 YSARAL 115
|
| >2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A Length = 153 | Back alignment and structure |
|---|
Score = 84.1 bits (208), Expect = 3e-19
Identities = 29/110 (26%), Positives = 49/110 (44%), Gaps = 10/110 (9%)
Query: 610 GEVEEVSSLEQFRAAVSLPG--VSVVHFKSAS----NLHCKQISPYVETLCGRYPSINFL 663
VEEV S QF + L + VVHF A C Q++ + L P ++F+
Sbjct: 12 AAVEEVGSAGQFEELLRLKAKSLLVVHF-WAPWAPQ---CAQMNEVMAELAKELPQVSFV 67
Query: 664 KVDIDESPGVAHAENVRIVPTFKIYKNGSRMKEIVCPSRDMLEHSVRHYS 713
K++ + P V+ + VPTF +KN ++ + L V+ ++
Sbjct: 68 KLEAEGVPEVSEKYEISSVPTFLFFKNSQKIDRLDGAHAPELTKKVQRHA 117
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 86.6 bits (215), Expect = 4e-19
Identities = 28/236 (11%), Positives = 68/236 (28%), Gaps = 34/236 (14%)
Query: 248 MGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDP 307
+G ++G +A KA+ + P +A + A A +E +A+ D
Sbjct: 43 LGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDS 102
Query: 308 NYWRAHQRLGSLLVRLGQVENARRHLCLSGQQA-------DPTEVHRLQVVEKHLSKCTD 360
R G L + E A + L +A + + V ++L
Sbjct: 103 RNARVLNNYGGFLYEQKRYEEAYQRL----LEASQDTLYPERSRVF------ENLGLV-- 150
Query: 361 ARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTV 420
+ ++ A + ++ + + L K + A +
Sbjct: 151 SLQMKKPAQAKEYFEKSLRLNRNQPSVALE-MADLLYKEREYVPARQYYDLFAQGGGQN- 208
Query: 421 SSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNN 476
+ + + ++ + A + + ++ P ++E
Sbjct: 209 -----------ARSL--LLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEFQAE 251
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 69.6 bits (171), Expect = 2e-13
Identities = 33/213 (15%), Positives = 63/213 (29%), Gaps = 38/213 (17%)
Query: 395 ALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAV 454
L+ E A+ L +I+PS ++A+ A + + A
Sbjct: 46 GYLQRGNTEQAKVPLRKALEIDPS------------SADAH--AALAVVFQTEMEPKLAD 91
Query: 455 TAAEKAGQIDPRNVEV-----AVLLNNVKLVA----------------RARA---RGNDL 490
KA D RN V L + R+R G
Sbjct: 92 EEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVS 151
Query: 491 FKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKA 550
+ ++ +A + + + LR + + + A +K ++ + + + ++
Sbjct: 152 LQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARS 211
Query: 551 LLRRAASNSKLEKWADAVRDFEVLRRELPDDNE 583
LL E A L+R P E
Sbjct: 212 LLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLE 244
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 50.3 bits (121), Expect = 6e-07
Identities = 13/121 (10%), Positives = 34/121 (28%), Gaps = 12/121 (9%)
Query: 452 NAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDP 511
K + + G + +A + L DP
Sbjct: 21 MGDQNPLKTDKGRDEARDA---YIQ---------LGLGYLQRGNTEQAKVPLRKALEIDP 68
Query: 512 SNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDF 571
S++ + A + + + + E+ +AL + L + +++ +A +
Sbjct: 69 SSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRL 128
Query: 572 E 572
Sbjct: 129 L 129
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 48.8 bits (117), Expect = 2e-06
Identities = 12/73 (16%), Positives = 19/73 (26%)
Query: 242 AEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEE 301
M + LY++ + A YD +NA A +
Sbjct: 175 PSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQ 234
Query: 302 AVRLDPNYWRAHQ 314
RL P +
Sbjct: 235 LKRLYPGSLEYQE 247
|
| >3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum} Length = 133 | Back alignment and structure |
|---|
Score = 82.9 bits (205), Expect = 4e-19
Identities = 23/130 (17%), Positives = 46/130 (35%), Gaps = 15/130 (11%)
Query: 594 SLKKSRGEEVYNMKFGGEVEEVSSLEQFRAAVSLPG--VSVVHFKSAS----NLHCKQIS 647
S G E + E+ + S V+ F A C +I
Sbjct: 4 HHHHSSGRENLYFQGQSIYIELKNTGSLNQVFSSTQNSSIVIKF-GAVWCKP---CNKIK 59
Query: 648 PYVETLCGRYPSINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMK----EIVCPSRD 703
Y + Y + + +D+D P + N++ +PTF+ Y N + + +++
Sbjct: 60 EYFKNQL-NYYYVTLVDIDVDIHPKLNDQHNIKALPTFEFYFNLNNEWVLVHTVEGANQN 118
Query: 704 MLEHSVRHYS 713
+E + + Y
Sbjct: 119 DIEKAFQKYC 128
|
| >1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa} Length = 130 | Back alignment and structure |
|---|
Score = 82.5 bits (204), Expect = 6e-19
Identities = 30/112 (26%), Positives = 55/112 (49%), Gaps = 12/112 (10%)
Query: 609 GGEVEEVSSLEQFRAAVSLPGVS----VVHFKSAS----NLHCKQISPYVETLCGRYPSI 660
G V + ++F A ++ + ++ F +AS C+ I+P ++P
Sbjct: 13 EGVVIACHNKDEFDAQMTKAKEAGKVVIIDF-TASWCGP---CRFIAPVFAEYAKKFPGA 68
Query: 661 NFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKEIVCPSRDMLEHSVRHY 712
FLKVD+DE VA NV +PTF K+G+ ++V +D L++++ +
Sbjct: 69 VFLKVDVDELKEVAEKYNVEAMPTFLFIKDGAEADKVVGARKDDLQNTIVKH 120
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 90.3 bits (223), Expect = 7e-19
Identities = 45/208 (21%), Positives = 83/208 (39%), Gaps = 12/208 (5%)
Query: 241 DAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECE 300
A+ L + N +G EA+ +Y KA+ + P AA SN A+ L G++ EA+ +
Sbjct: 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYK 67
Query: 301 EAVRLDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTD 360
EA+R+ P + A+ +G+ L + V+ A + + Q +P + H + +
Sbjct: 68 EAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQI-NP------AFADAHSNLASI 120
Query: 361 ARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTV 420
+ G+ A+ A+ DF P L + D + + + I +
Sbjct: 121 HKDSGNIPEAIASYRTALKLKPDF-PDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQL 179
Query: 421 SSSQ----TRFFGMLSEAYTFFVRAQIE 444
++ ML F +A E
Sbjct: 180 EKNRLPSVHPHHSMLYPLSHGFRKAIAE 207
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 82.2 bits (202), Expect = 2e-16
Identities = 29/159 (18%), Positives = 57/159 (35%), Gaps = 14/159 (8%)
Query: 433 EAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFK 492
++ A I+ G E AV KA ++ P L + L +
Sbjct: 10 DSLNN--LANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNL------------ASVLQQ 55
Query: 493 SERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALL 552
+ EA Y E +R P+ + Y N ++ + +++ +A+ I P + A
Sbjct: 56 QGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHS 115
Query: 553 RRAASNSKLEKWADAVRDFEVLRRELPDDNEIAESLFHA 591
A+ + +A+ + + PD + +L H
Sbjct: 116 NLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHC 154
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 77.2 bits (189), Expect = 9e-15
Identities = 46/330 (13%), Positives = 101/330 (30%), Gaps = 38/330 (11%)
Query: 395 ALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAV 454
+ +E+A ++ P A A + G+ + A+
Sbjct: 18 IKREQGNIEEAVRLYRKALEVFPEF--------------AAAHSNLASVLQQQGKLQEAL 63
Query: 455 TAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNS 514
++A +I P A +N GN L + + A Q Y ++ +P+ +
Sbjct: 64 MHYKEAIRISPTF---ADAYSN---------MGNTLKEMQDVQGALQCYTRAIQINPAFA 111
Query: 515 VLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVL 574
+ N A+ G ++ AL ++P++ A A + W D + L
Sbjct: 112 DAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKL 171
Query: 575 RRELPDDNEIAES---------LFHAQVSLKKSRGEEVYNMKFGGEVEEVSSLEQFRAAV 625
+ D E L+ +K+ E N+ + +
Sbjct: 172 VSIVADQLEKNRLPSVHPHHSMLYPLSHGFRKAIAERHGNLCLDKINVLHKPPYEHPKDL 231
Query: 626 SLPGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAHAENVRIVPTF 685
L + +S+ S ++++ G + F SP V+++
Sbjct: 232 KLSDGRLRVGYVSSDFGNHPTSHLMQSIPGMHNPDKFEVFCYALSPDDGTNFRVKVMAEA 291
Query: 686 KIYKNGSRMK---EIVCPSRDMLEHSVRHY 712
+ + S++ + H + +
Sbjct: 292 NHFIDLSQIPCNGKAADRIHQDGIHILVNM 321
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 71.4 bits (174), Expect = 5e-13
Identities = 39/203 (19%), Positives = 72/203 (35%), Gaps = 28/203 (13%)
Query: 270 SLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVRLGQVENA 329
P +A +N A G I EAV+ +A+ + P + AH L S+L + G+++ A
Sbjct: 3 GSCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEA 62
Query: 330 RRHLCLSGQQA---DPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSP 386
H ++A PT + + +++ D + AL+ AI F+
Sbjct: 63 LMHY----KEAIRISPTFADA------YSNMGNTLKEMQDVQGALQCYTRAIQINPAFAD 112
Query: 387 QLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMA 446
S + +A +S K++P +AY A
Sbjct: 113 AHSN-LASIHKDSGNIPEAIASYRTALKLKPD------------FPDAYCN--LAHCLQI 157
Query: 447 LGRFENAVTAAEKAGQIDPRNVE 469
+ + + +K I +E
Sbjct: 158 VCDWTDYDERMKKLVSIVADQLE 180
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 82.9 bits (205), Expect = 9e-19
Identities = 17/98 (17%), Positives = 28/98 (28%)
Query: 236 GICGGDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEA 295
I +++ + Y KG EA + N + AA + +A
Sbjct: 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQA 89
Query: 296 VKECEEAVRLDPNYWRAHQRLGSLLVRLGQVENARRHL 333
A L N + G +RL A+
Sbjct: 90 ADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECF 127
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 73.7 bits (181), Expect = 1e-15
Identities = 22/159 (13%), Positives = 48/159 (30%), Gaps = 19/159 (11%)
Query: 441 AQIEMALGRFENAVTAAE---KAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFT 497
+ E +A+ + I ++ + D + R
Sbjct: 6 TENESISTAVIDAINSGATLKDINAIPDDMMD------------DIYSYAYDFYNKGRIE 53
Query: 498 EACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAAS 557
EA + +D N AA + Q++++ + A + N +
Sbjct: 54 EAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQC 113
Query: 558 NSKLEKWADAVRDFEVLRRELPDDNEIAESLFHAQVSLK 596
+L+ A FE++ + +D ++ AQ L
Sbjct: 114 QLRLKAPLKAKECFELV-IQHSNDEKLKIK---AQSYLD 148
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 64.4 bits (157), Expect = 2e-12
Identities = 24/164 (14%), Positives = 47/164 (28%), Gaps = 28/164 (17%)
Query: 394 EALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENA 453
+ ++ ++L +I I + + AY F+ GR E A
Sbjct: 10 SISTAVIDAINSGATLKDINAIPDDMM----DDIYSY---AYDFY-------NKGRIEEA 55
Query: 454 VTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSN 513
D NV+ + L E+F +A Y ++
Sbjct: 56 EVFFRFLCIYDFYNVDYIMGL------------AAIYQIKEQFQQAADLYAVAFALGKND 103
Query: 514 SVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAAS 557
+ C +L ++ E + + + L +A S
Sbjct: 104 YTPVFHTGQCQLRLKAPLKAKECFELVIQHSND--EKLKIKAQS 145
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 56.3 bits (136), Expect = 1e-09
Identities = 11/82 (13%), Positives = 28/82 (34%), Gaps = 3/82 (3%)
Query: 241 DAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECE 300
+ + + + K F +A +Y A +L + + L +A + E
Sbjct: 69 NVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFE 128
Query: 301 EAVRLDPN---YWRAHQRLGSL 319
++ + +A L ++
Sbjct: 129 LVIQHSNDEKLKIKAQSYLDAI 150
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 44.4 bits (105), Expect = 2e-05
Identities = 13/89 (14%), Positives = 23/89 (25%), Gaps = 3/89 (3%)
Query: 241 DAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECE 300
+ E + + + G L ++ + A GRI EA
Sbjct: 4 NITENESISTAVIDAINSGATLKD---INAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFR 60
Query: 301 EAVRLDPNYWRAHQRLGSLLVRLGQVENA 329
D L ++ Q + A
Sbjct: 61 FLCIYDFYNVDYIMGLAAIYQIKEQFQQA 89
|
| >1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1 Length = 125 | Back alignment and structure |
|---|
Score = 81.7 bits (202), Expect = 9e-19
Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 8/93 (8%)
Query: 610 GEVEEVSSLEQFRAAVSLPGVSVVHFKSAS----NLHCKQISPYVETLCGRYPSINFLKV 665
V +V S+EQFR +S ++V F +A CK I +E + +P++ F KV
Sbjct: 19 PSVVDVYSVEQFRNIMSEDILTVAWF-TAVWCGP---CKTIERPMEKIAYEFPTVKFAKV 74
Query: 666 DIDESPGVAHAENVRIVPTFKIYKNGSRMKEIV 698
D D + + V +PTF I ++G + ++
Sbjct: 75 DADNNSEIVSKCRVLQLPTFIIARSGKMLGHVI 107
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 85.9 bits (212), Expect = 1e-18
Identities = 39/309 (12%), Positives = 86/309 (27%), Gaps = 47/309 (15%)
Query: 289 LGRIGEAVKECEEAVRLDPNYWRAHQRLGSL-LVRLGQVENARRHLCLSGQQADPTEVHR 347
+G + + E + P + + + + + E+
Sbjct: 12 IGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEI----KPSSAPELQA 67
Query: 348 LQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGAD-FSPQLSMCRVEALLKLHQLEDAE 406
+++ ++L+ + + E D ++ D + + + A
Sbjct: 68 VRMFAEYLASH------SRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAAL 121
Query: 407 SSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPR 466
+L +E + QI + L R + A +K D
Sbjct: 122 RTLHQGDSLEC-------------------MAMTVQILLKLDRLDLARKELKKMQDQDED 162
Query: 467 NVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFK 526
L A A + E+ +A + E +L +AAC
Sbjct: 163 AT----------LTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMA 212
Query: 527 LGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDF-EVLRRELPD----- 580
G+WE + +AL + + L+ + L K + + L+
Sbjct: 213 QGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIK 272
Query: 581 DNEIAESLF 589
+ E+ F
Sbjct: 273 EYRAKENDF 281
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 62.8 bits (152), Expect = 6e-11
Identities = 14/86 (16%), Positives = 26/86 (30%)
Query: 258 FGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLG 317
+A ++ + + +AA GR A +EA+ D + L
Sbjct: 182 LQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLV 241
Query: 318 SLLVRLGQVENARRHLCLSGQQADPT 343
L LG+ + A +
Sbjct: 242 VLSQHLGKPPEVTNRYLSQLKDAHRS 267
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 56.3 bits (135), Expect = 9e-09
Identities = 20/128 (15%), Positives = 36/128 (28%), Gaps = 6/128 (4%)
Query: 252 LYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAAL--TGLGRIGEAVKECEEAVRLDPNY 309
L + A K + A G ++ +A +E
Sbjct: 140 LLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPT 199
Query: 310 WRAHQRLGSLLVRLGQVENARRHL--CLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDW 367
+ + G+ E A L L P + L V+ +HL K + +
Sbjct: 200 LLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTN--RY 257
Query: 368 KSALREGD 375
S L++
Sbjct: 258 LSQLKDAH 265
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 49.7 bits (118), Expect = 1e-06
Identities = 25/264 (9%), Positives = 47/264 (17%), Gaps = 76/264 (28%)
Query: 241 DAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECE 300
+ L + + AL + SL L L R+ A KE +
Sbjct: 100 NTTFLLMAASIYFYDQNPDAALRTLHQGDSLECMA-----MTVQILLKLDRLDLARKELK 154
Query: 301 EAVRLDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTD 360
+ D + + + G
Sbjct: 155 KMQDQDEDATLTQLATAWVSLAAGG----------------------------------- 179
Query: 361 ARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTV 420
+ A + + L + + + E AE L +
Sbjct: 180 ----EKLQDAYYIFQEMADKCSP-TLLLLNGQAACHMAQGRWEAAEGVLQEALDKDS--- 231
Query: 421 SSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTA-AEKAGQIDPRNVEVAVLLNNVKL 479
T + LG+ + + +
Sbjct: 232 -----------GHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEYRA---- 276
Query: 480 VARARARGNDLFKSERFTEACQAY 503
K F Y
Sbjct: 277 ------------KENDFDRLVLQY 288
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 48.2 bits (114), Expect = 4e-06
Identities = 9/74 (12%), Positives = 20/74 (27%), Gaps = 1/74 (1%)
Query: 237 ICGGDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAV 296
C L +G + A + +A+ + N LG+ E
Sbjct: 195 KCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVT 254
Query: 297 KECEEAVR-LDPNY 309
++ ++
Sbjct: 255 NRYLSQLKDAHRSH 268
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 46.3 bits (109), Expect = 2e-05
Identities = 27/238 (11%), Positives = 69/238 (28%), Gaps = 38/238 (15%)
Query: 364 VGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSS 423
+G ++ + E + + + + A L + + +I+PS+
Sbjct: 12 IGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVV------LDEIKPSSAPEL 65
Query: 424 QTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEK--AGQIDPRNVEVAVLLNNVKLVA 481
Q M A+ + R + V ++ + +D N ++
Sbjct: 66 QA--VRMF---------AEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMA------- 107
Query: 482 RARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQAL 541
+ F + A + +G + KL + + + ++ +
Sbjct: 108 -----ASIYFYDQNPDAALRTLHQGD-----SLECMAMTVQILLKLDRLDLARKELKKMQ 157
Query: 542 LIQPNYTKALLRRAASNSKL--EKWADAVRDFEVLRRELPDDNEIAESLFHAQVSLKK 597
+ T L A + EK DA F+ + + + ++ +
Sbjct: 158 DQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGR 215
|
| >1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A Length = 112 | Back alignment and structure |
|---|
Score = 80.5 bits (199), Expect = 2e-18
Identities = 37/114 (32%), Positives = 57/114 (50%), Gaps = 13/114 (11%)
Query: 609 GGEVEEVSSLEQFRAAVSLPGVS----VVHFKSAS----NLHCKQISPYVETLCGRYP-S 659
GG V + S + A ++ VV F +A+ CK I+P ETL Y
Sbjct: 1 GGSVIVIDSKAAWDAQLAKGKEEHKPIVVDF-TATWCGP---CKMIAPLFETLSNDYAGK 56
Query: 660 INFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKEIVCPSRDMLEHSVRHYS 713
+ FLKVD+D VA A + +PTF +YK+G + ++V S+D L+ V ++
Sbjct: 57 VIFLKVDVDAVAAVAEAAGITAMPTFHVYKDGVKADDLVGASQDKLKALVAKHA 110
|
| >2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica} Length = 104 | Back alignment and structure |
|---|
Score = 79.6 bits (197), Expect = 3e-18
Identities = 24/107 (22%), Positives = 45/107 (42%), Gaps = 10/107 (9%)
Query: 612 VEEVSSLEQFRAAVSLPG--VSVVHFKSAS----NLHCKQISPYVETLCGRYPSINFLKV 665
+ +++ ++ + VV F A C+ I+P VE L P + F KV
Sbjct: 1 MRVLATAADLEKLINENKGRLIVVDF-FAQWCGP---CRNIAPKVEALAKEIPEVEFAKV 56
Query: 666 DIDESPGVAHAENVRIVPTFKIYKNGSRMKEIVCPSRDMLEHSVRHY 712
D+D++ A +V +PTF K+G + + L ++ +
Sbjct: 57 DVDQNEEAAAKYSVTAMPTFVFIKDGKEVDRFSGANETKLRETITRH 103
|
| >3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B Length = 109 | Back alignment and structure |
|---|
Score = 79.7 bits (197), Expect = 3e-18
Identities = 28/106 (26%), Positives = 54/106 (50%), Gaps = 8/106 (7%)
Query: 612 VEEVSSLEQFRAAVSLPGVSVVHFKSAS----NLHCKQISPYVETLCGRYPSINFLKVDI 667
V + + +F +A++ + VV F A+ CK I+P +E +YP +F K+D+
Sbjct: 8 VTQFKTASEFDSAIAQDKLVVVDF-YATWCGP---CKMIAPMIEKFSEQYPQADFYKLDV 63
Query: 668 DESPGVAHAENVRIVPTFKIYKNGSRMKEIVCPSRDMLEHSVRHYS 713
DE VA V +PT ++KNG + ++V + ++ ++ +
Sbjct: 64 DELGDVAQKNEVSAMPTLLLFKNGKEVAKVVGANPAAIKQAIAANA 109
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 81.0 bits (201), Expect = 7e-18
Identities = 11/82 (13%), Positives = 30/82 (36%)
Query: 248 MGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDP 307
G + G + +A+ + ++ + + A G + + E ++ P
Sbjct: 14 KGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAP 73
Query: 308 NYWRAHQRLGSLLVRLGQVENA 329
+ + LG V++ + + A
Sbjct: 74 DNVKVATVLGLTYVQVQKYDLA 95
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 80.2 bits (199), Expect = 2e-17
Identities = 21/82 (25%), Positives = 35/82 (42%)
Query: 248 MGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDP 307
+G + + A+ + K P N R AL LGR EA+ + A+ L P
Sbjct: 82 LGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRP 141
Query: 308 NYWRAHQRLGSLLVRLGQVENA 329
N + H+ + ++G+ E A
Sbjct: 142 NEGKVHRAIAFSYEQMGRHEEA 163
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 79.0 bits (196), Expect = 4e-17
Identities = 15/82 (18%), Positives = 31/82 (37%)
Query: 248 MGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDP 307
+G + G + +++++ AP N + + + AV + +P
Sbjct: 48 LGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANP 107
Query: 308 NYWRAHQRLGSLLVRLGQVENA 329
+ RLG L LG+ + A
Sbjct: 108 INFNVRFRLGVALDNLGRFDEA 129
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 75.6 bits (187), Expect = 5e-16
Identities = 24/178 (13%), Positives = 55/178 (30%), Gaps = 26/178 (14%)
Query: 395 ALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAV 454
+ K + A L + + + + G +
Sbjct: 17 SHAKAGRYSQAVMLLEQVYDADAF------------DVDVA--LHLGIAYVKTGAVDRGT 62
Query: 455 TAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNS 514
E++ P NV+V G + +++ A + +P N
Sbjct: 63 ELLERSLADAPDNVKV---ATV---------LGLTYVQVQKYDLAVPLLIKVAEANPINF 110
Query: 515 VLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFE 572
+ LG+++ +++ AL ++PN K A S ++ + +A+ F+
Sbjct: 111 NVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFK 168
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 71.3 bits (176), Expect = 2e-14
Identities = 24/157 (15%), Positives = 49/157 (31%), Gaps = 26/157 (16%)
Query: 395 ALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAV 454
A +K ++ L P + V + + +++ AV
Sbjct: 51 AYVKTGAVDRGTELLERSLADAPD------------NVKVA--TVLGLTYVQVQKYDLAV 96
Query: 455 TAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNS 514
K + +P N V G L RF EA ++ L P+
Sbjct: 97 PLLIKVAEANPINFNV---RFR---------LGVALDNLGRFDEAIDSFKIALGLRPNEG 144
Query: 515 VLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKAL 551
++ A + ++G+ E ++ +A + + L
Sbjct: 145 KVHRAIAFSYEQMGRHEEALPHFKKANELDEGASVEL 181
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 67.1 bits (165), Expect = 6e-13
Identities = 18/73 (24%), Positives = 28/73 (38%), Gaps = 3/73 (4%)
Query: 248 MGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDP 307
+G L G F EA+ + A+ L P A + +GR EA+ ++A LD
Sbjct: 116 LGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDE 175
Query: 308 NYWRAHQRLGSLL 320
L +
Sbjct: 176 GASVE---LALVP 185
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 62.5 bits (153), Expect = 2e-11
Identities = 15/87 (17%), Positives = 34/87 (39%)
Query: 486 RGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQP 545
+G K+ R+++A + D + + + + K G +R E ++L P
Sbjct: 14 KGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAP 73
Query: 546 NYTKALLRRAASNSKLEKWADAVRDFE 572
+ K + +++K+ AV
Sbjct: 74 DNVKVATVLGLTYVQVQKYDLAVPLLI 100
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 56.3 bits (137), Expect = 3e-09
Identities = 11/61 (18%), Positives = 20/61 (32%)
Query: 269 ISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVRLGQVEN 328
+ + ++ + GR +AV E+ D LG V+ G V+
Sbjct: 1 MGNDDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDR 60
Query: 329 A 329
Sbjct: 61 G 61
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 47.8 bits (115), Expect = 2e-06
Identities = 10/63 (15%), Positives = 17/63 (26%)
Query: 510 DPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVR 569
D V Y ++ K G++ ++V Q L + K
Sbjct: 4 DDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTE 63
Query: 570 DFE 572
E
Sbjct: 64 LLE 66
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 79.6 bits (196), Expect = 9e-18
Identities = 16/93 (17%), Positives = 33/93 (35%)
Query: 241 DAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECE 300
E+L + Y+ G + +A ++ L ++ F A +G+ A+
Sbjct: 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYS 79
Query: 301 EAVRLDPNYWRAHQRLGSLLVRLGQVENARRHL 333
+D R L++ G++ A L
Sbjct: 80 YGAVMDIXEPRFPFHAAECLLQXGELAEAESGL 112
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 74.2 bits (182), Expect = 8e-16
Identities = 18/158 (11%), Positives = 51/158 (32%), Gaps = 15/158 (9%)
Query: 448 GRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGL 507
G + +I +E + + ++S + +A +
Sbjct: 1 GPLGSGGGTIAMLNEISSDTLEQLY------------SLAFNQYQSGXYEDAHXVFQALC 48
Query: 508 RFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADA 567
D +S + AC +GQ++ ++ + ++ + A + + A+A
Sbjct: 49 VLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEA 108
Query: 568 VRDFEV---LRRELPDDNEIAESLFHAQVSLKKSRGEE 602
+ L P+ E++ + ++K + +
Sbjct: 109 ESGLFLAQELIANXPEFXELSTRVSSMLEAIKLKKEMK 146
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 53.8 bits (129), Expect = 1e-08
Identities = 17/83 (20%), Positives = 27/83 (32%), Gaps = 3/83 (3%)
Query: 241 DAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECE 300
D+ +G G + A+ Y + F + A L G + EA
Sbjct: 54 DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLF 113
Query: 301 EAVRLD---PNYWRAHQRLGSLL 320
A L P + R+ S+L
Sbjct: 114 LAQELIANXPEFXELSTRVSSML 136
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 52.6 bits (126), Expect = 2e-08
Identities = 23/154 (14%), Positives = 40/154 (25%), Gaps = 14/154 (9%)
Query: 256 GCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQR 315
G G ++ + A G +A + LD R
Sbjct: 1 GPLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLG 60
Query: 316 LGSLLVRLGQVENARRHLCLSGQQA---DPTEVHRLQVVEKHLSKCTDARKVGDWKSALR 372
LG+ +GQ + A D E H ++C + G+ A
Sbjct: 61 LGACRQAMGQYDLAIHSY----SYGAVMDIXEPRFPF----HAAEC--LLQXGELAEAES 110
Query: 373 EGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAE 406
A A+ P+ L ++ +
Sbjct: 111 GLFLAQELIAN-XPEFXELSTRVSSMLEAIKLKK 143
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 41.1 bits (96), Expect = 3e-04
Identities = 15/159 (9%), Positives = 37/159 (23%), Gaps = 32/159 (20%)
Query: 401 QLEDAESSLSNIPKIEPSTVSSSQTR---FF--GMLSEAYTFFVRA-------------- 441
L +++ + +I T+ + + G +A+ F
Sbjct: 2 PLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGL 61
Query: 442 -QIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEAC 500
A+G+++ A+ + +D L + EA
Sbjct: 62 GACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAEC------------LLQXGELAEAE 109
Query: 501 QAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQ 539
+ L + E ++
Sbjct: 110 SGLFLAQELIANXPEFXELSTRVSSMLEAIKLKKEMKHE 148
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 81.5 bits (202), Expect = 1e-17
Identities = 38/197 (19%), Positives = 69/197 (35%), Gaps = 31/197 (15%)
Query: 395 ALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAV 454
++ A +S+ + K +P A+ VRA+I L + A
Sbjct: 17 EYMRGQDYRQATASIEDALKSDPK------------NELAW--LVRAEIYQYLKVNDKAQ 62
Query: 455 TAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLF-KSERFTEACQAYGEGLRFD--P 511
+ +A I P + E+ NN G L + R E+ + + L P
Sbjct: 63 ESFRQALSIKPDSAEI---NNN---------YGWFLCGRLNRPAESMAYFDKALADPTYP 110
Query: 512 SNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDF 571
+ + N+ C K GQ+ + ++L QP + A A + + DA F
Sbjct: 111 TPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYF 170
Query: 572 EVLRRELPDDNEIAESL 588
+ + + A+ L
Sbjct: 171 KKYQSRVEVLQ--ADDL 185
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 81.2 bits (201), Expect = 2e-17
Identities = 37/234 (15%), Positives = 69/234 (29%), Gaps = 37/234 (15%)
Query: 241 DAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECE 300
+ ++ E R + +A + + A+ P+N RA L +A +
Sbjct: 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFR 66
Query: 301 EAVRLDPNYWRAHQRLGSLLV-RLGQVENARRHLCLSGQQA-------DPTEVHRLQVVE 352
+A+ + P+ + G L RL + + + +A P +
Sbjct: 67 QALSIKPDSAEINNNYGWFLCGRLNRPAESMAYF----DKALADPTYPTPYIAN------ 116
Query: 353 KHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNI 412
+ C + K G + A ++AA F P + QL DA+
Sbjct: 117 LNKGIC--SAKQGQFGLAEAYLKRSLAAQPQFPPAFKE-LARTKMLAGQLGDADYYFKKY 173
Query: 413 PKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPR 466
+A + +I NA A E Q+
Sbjct: 174 QSRVEV-------------LQADDLLLGWKIA---KALGNAQAAYEYEAQLQAN 211
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 65.0 bits (159), Expect = 5e-12
Identities = 41/262 (15%), Positives = 72/262 (27%), Gaps = 69/262 (26%)
Query: 272 APRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVRLGQVENARR 331
A + + ++ A +A E+A++ DP A + L + A+
Sbjct: 4 ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQE 63
Query: 332 HLCLSGQQA---DPTEVHRLQVVEKHLSKCTDAR---------KVGDWKSALREGDAAIA 379
+QA P + ++ ++ D A+A
Sbjct: 64 SF----RQALSIKP--------------DSAEINNNYGWFLCGRLNRPAESMAYFDKALA 105
Query: 380 AGADFSPQLSMCRVEA-------LLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLS 432
P A K Q AE+ L +P
Sbjct: 106 --DPTYPT----PYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ------------FP 147
Query: 433 EAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFK 492
A+ A+ +M G+ +A +K LL K+ A+A GN
Sbjct: 148 PAF--KELARTKMLAGQLGDADYYFKKYQSRVEVLQA-DDLLLGWKI---AKALGN---- 197
Query: 493 SERFTEACQAYGEGLRFDPSNS 514
+A Y L+ + S
Sbjct: 198 ----AQAAYEYEAQLQANFPYS 215
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 50.7 bits (122), Expect = 3e-07
Identities = 17/95 (17%), Positives = 42/95 (44%), Gaps = 4/95 (4%)
Query: 482 RARAR---GNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSN 538
+ + + + + + +A + + L+ DP N + + RA + L +++ E
Sbjct: 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFR 66
Query: 539 QALLIQPNYTKALLRRAAS-NSKLEKWADAVRDFE 572
QAL I+P+ + +L + A+++ F+
Sbjct: 67 QALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFD 101
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 7e-06
Identities = 12/68 (17%), Positives = 19/68 (27%), Gaps = 2/68 (2%)
Query: 242 AEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEE 301
K + G G+A + K S A + +G A E
Sbjct: 147 PPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQA--DDLLLGWKIAKALGNAQAAYEY 204
Query: 302 AVRLDPNY 309
+L N+
Sbjct: 205 EAQLQANF 212
|
| >4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus} Length = 105 | Back alignment and structure |
|---|
Score = 77.3 bits (191), Expect = 2e-17
Identities = 18/106 (16%), Positives = 45/106 (42%), Gaps = 7/106 (6%)
Query: 612 VEEVSSLEQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESP 671
+ ++E+ + + ++ K+ + C + V + Y + +++ + +
Sbjct: 2 MNTFKTIEELATYIEEQQLVLLFIKTENCGVCDVMLRKVNYVLENYNYVEKIEILLQDMQ 61
Query: 672 GVAHAENVRIVPTFKIYKNGSRMKEIVCPSR----DMLEHSVRHYS 713
+A V PT ++ NG KEI+ SR + LE +++ +
Sbjct: 62 EIAGRYAVFTGPTVLLFYNG---KEILRESRFISLENLERTIQLFE 104
|
| >2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A Length = 117 | Back alignment and structure |
|---|
Score = 77.4 bits (191), Expect = 2e-17
Identities = 30/118 (25%), Positives = 54/118 (45%), Gaps = 11/118 (9%)
Query: 601 EEVYNMKFGGEVEEVSSLEQFRAAVSLPG--VSVVHFKSAS----NLHCKQISPYVETLC 654
E + E+ E+ + + + VV F A+ CK I+P + L
Sbjct: 4 EFTSQLVIMSELIELKQDGDLESLLEQHKNKLVVVDF-FATWCGP---CKTIAPLFKELS 59
Query: 655 GRYPSINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKEIVCPSRDMLEHSVRHY 712
+Y +I F+KVD+D+ A N+ +PTF KNG ++ ++V S +E ++ +
Sbjct: 60 EKYDAI-FVKVDVDKLEETARKYNISAMPTFIAIKNGEKVGDVVGASIAKVEDMIKKF 116
|
| >1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A Length = 106 | Back alignment and structure |
|---|
Score = 75.8 bits (187), Expect = 6e-17
Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 11/106 (10%)
Query: 612 VEEVSSLEQFRAAVSLPG--VSVVHFKSAS----NLHCKQISPYVETLCGRYPS-INFLK 664
V +V ++ + V+ F A+ CK ISP + L ++ + LK
Sbjct: 2 VYQVKDKADLDGQLTKASGKLVVLDF-FATWCGP---CKMISPKLVELSTQFADNVVVLK 57
Query: 665 VDIDESPGVAHAENVRIVPTFKIYKNGSRMKEIVCPSRDMLEHSVR 710
VD+DE +A N+ +PTF KNG +++E + LE ++
Sbjct: 58 VDVDECEDIAMEYNISSMPTFVFLKNGVKVEEFAGANAKRLEDVIK 103
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370 | Back alignment and structure |
|---|
Score = 82.1 bits (203), Expect = 6e-17
Identities = 38/175 (21%), Positives = 70/175 (40%), Gaps = 16/175 (9%)
Query: 444 EMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAY 503
G F + + +V++ + + + + GN FKS+ + A + Y
Sbjct: 187 GDDWGIFPKDGSGDSHPDFPEDADVDLKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKY 246
Query: 504 GEGLRF----------DPSNSV------LYCNRAACWFKLGQWERSVEDSNQALLIQPNY 547
+ LR+ + N AC K+ W+ +V+ +AL I P+
Sbjct: 247 TKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSN 306
Query: 548 TKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAESLFHAQVSLKKSRGEE 602
TKAL RRA L+++ A+ D + + P+D I L + +K + +E
Sbjct: 307 TKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE 361
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370 | Back alignment and structure |
|---|
Score = 51.3 bits (123), Expect = 5e-07
Identities = 23/104 (22%), Positives = 39/104 (37%), Gaps = 16/104 (15%)
Query: 242 AEELKRMGNELYRKGCFGEALSMYDKAI----------------SLAPRNAAFRSNRAAA 285
+E+LK +GN ++ + A+ Y K + L P + N A
Sbjct: 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGAC 282
Query: 286 LTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVRLGQVENA 329
+ AV C EA+ +DP+ +A R L + + A
Sbjct: 283 KLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQA 326
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 76.7 bits (190), Expect = 8e-17
Identities = 27/82 (32%), Positives = 42/82 (51%)
Query: 248 MGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDP 307
+GN Y++G + EA+ Y KA+ L PR+A N A G EA++ ++A+ LDP
Sbjct: 41 LGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 100
Query: 308 NYWRAHQRLGSLLVRLGQVENA 329
A LG+ + G + A
Sbjct: 101 RSAEAWYNLGNAYYKQGDYDEA 122
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 74.3 bits (184), Expect = 5e-16
Identities = 27/82 (32%), Positives = 42/82 (51%)
Query: 248 MGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDP 307
+GN Y++G + EA+ Y KA+ L PR+A N A G EA++ ++A+ LDP
Sbjct: 7 LGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 66
Query: 308 NYWRAHQRLGSLLVRLGQVENA 329
A LG+ + G + A
Sbjct: 67 RSAEAWYNLGNAYYKQGDYDEA 88
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 68.6 bits (169), Expect = 5e-14
Identities = 28/126 (22%), Positives = 57/126 (45%), Gaps = 12/126 (9%)
Query: 447 LGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEG 506
G ++ A+ +KA ++DPR+ E N GN +K + EA + Y +
Sbjct: 14 QGDYDEAIEYYQKALELDPRSAEA---WYN---------LGNAYYKQGDYDEAIEYYQKA 61
Query: 507 LRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWAD 566
L DP ++ + N ++K G ++ ++E +AL + P +A + K + +
Sbjct: 62 LELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDE 121
Query: 567 AVRDFE 572
A+ ++
Sbjct: 122 AIEYYQ 127
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 62.0 bits (152), Expect = 1e-11
Identities = 31/152 (20%), Positives = 61/152 (40%), Gaps = 26/152 (17%)
Query: 395 ALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAV 454
A K ++A +++P + EA+ + G ++ A+
Sbjct: 10 AYYKQGDYDEAIEYYQKALELDPRSA------------EAW--YNLGNAYYKQGDYDEAI 55
Query: 455 TAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNS 514
+KA ++DPR+ E N GN +K + EA + Y + L DP ++
Sbjct: 56 EYYQKALELDPRSAEA---WYN---------LGNAYYKQGDYDEAIEYYQKALELDPRSA 103
Query: 515 VLYCNRAACWFKLGQWERSVEDSNQALLIQPN 546
+ N ++K G ++ ++E +AL + P
Sbjct: 104 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 60.5 bits (148), Expect = 3e-11
Identities = 22/61 (36%), Positives = 34/61 (55%)
Query: 248 MGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDP 307
+GN Y++G + EA+ Y KA+ L PR+A N A G EA++ ++A+ LDP
Sbjct: 75 LGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134
Query: 308 N 308
Sbjct: 135 R 135
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 56.6 bits (138), Expect = 8e-10
Identities = 19/87 (21%), Positives = 41/87 (47%)
Query: 486 RGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQP 545
GN +K + EA + Y + L DP ++ + N ++K G ++ ++E +AL + P
Sbjct: 7 LGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 66
Query: 546 NYTKALLRRAASNSKLEKWADAVRDFE 572
+A + K + +A+ ++
Sbjct: 67 RSAEAWYNLGNAYYKQGDYDEAIEYYQ 93
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 47.8 bits (115), Expect = 1e-06
Identities = 14/50 (28%), Positives = 22/50 (44%)
Query: 280 SNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVRLGQVENA 329
N A G EA++ ++A+ LDP A LG+ + G + A
Sbjct: 5 YNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEA 54
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 39.7 bits (94), Expect = 6e-04
Identities = 10/56 (17%), Positives = 26/56 (46%)
Query: 517 YCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFE 572
+ N ++K G ++ ++E +AL + P +A + K + +A+ ++
Sbjct: 4 WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQ 59
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 39.3 bits (93), Expect = 7e-04
Identities = 24/119 (20%), Positives = 44/119 (36%), Gaps = 26/119 (21%)
Query: 395 ALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAV 454
A K ++A +++P + EA+ + G ++ A+
Sbjct: 44 AYYKQGDYDEAIEYYQKALELDPRSA------------EAW--YNLGNAYYKQGDYDEAI 89
Query: 455 TAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSN 513
+KA ++DPR+ E N GN +K + EA + Y + L DP +
Sbjct: 90 EYYQKALELDPRSAEA---WYN---------LGNAYYKQGDYDEAIEYYQKALELDPRS 136
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 82.6 bits (204), Expect = 1e-16
Identities = 26/212 (12%), Positives = 56/212 (26%), Gaps = 13/212 (6%)
Query: 448 GRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGL 507
+ A + P++ ++L + T A GL
Sbjct: 3 ADGPRELLQLRAAVRHRPQDFVAWLML------------ADAELGMGDTTAGEMAVQRGL 50
Query: 508 RFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADA 567
P + + + + QA P + L + + A
Sbjct: 51 ALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAA 110
Query: 568 VRDFEVLRRELPDDNEIAESLFHAQVSLKKSRGEEVYNMKFGGEVEEVSSLEQFRAAVSL 627
+ + LP++ I L + + L R +V + + V + + A +S
Sbjct: 111 AAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLSE 170
Query: 628 PGVSVVHFKSASNLHCKQISPYVETLCGRYPS 659
+ + + I+ V L
Sbjct: 171 DASAAEQLA-CARTRAQAIAASVRPLAPTRVR 201
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 82.6 bits (204), Expect = 1e-16
Identities = 32/196 (16%), Positives = 58/196 (29%), Gaps = 7/196 (3%)
Query: 240 GDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKEC 299
D + + G + ++L P + + R EA
Sbjct: 21 QDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80
Query: 300 EEAVRLDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQA---DPTEVHRLQVVEKHLS 356
++A P + LG L GQ E A +A P E + +
Sbjct: 81 QQASDAAPEHPGIALWLGHALEDAGQAEAAAAAY----TRAHQLLPEEPYITAQLLNWRR 136
Query: 357 KCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIE 416
+ D R + + +R A + LS A A++ +++ +
Sbjct: 137 RLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLSEDASAAEQLACARTRAQAIAASVRPLA 196
Query: 417 PSTVSSSQTRFFGMLS 432
P+ V S G +S
Sbjct: 197 PTRVRSKGPLRVGFVS 212
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 72.2 bits (177), Expect = 3e-13
Identities = 15/74 (20%), Positives = 24/74 (32%)
Query: 260 EALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSL 319
L A+ P++ A A G+G + + L P + A RLG +
Sbjct: 7 RELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRV 66
Query: 320 LVRLGQVENARRHL 333
+ A L
Sbjct: 67 RWTQQRHAEAAVLL 80
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 66.4 bits (162), Expect = 2e-11
Identities = 22/158 (13%), Positives = 42/158 (26%), Gaps = 13/158 (8%)
Query: 434 AYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKS 493
+ + A E+ +G A ++ + P + E L G +
Sbjct: 23 FVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARL------------GRVRWTQ 70
Query: 494 ERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLR 553
+R EA + P + + GQ E + +A + P +
Sbjct: 71 QRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQ 130
Query: 554 RAASNSKLEKWADAVRDFEVLRRELPDDNEIAESLFHA 591
+L W +R + A F
Sbjct: 131 LLNWRRRLCDWRALDVLSAQVRAAV-AQGVGAVEPFAF 167
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 54.9 bits (132), Expect = 7e-08
Identities = 32/266 (12%), Positives = 59/266 (22%), Gaps = 63/266 (23%)
Query: 290 GRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQ 349
+ + AVR P + A L + +G +
Sbjct: 3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAV---------------- 46
Query: 350 VVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSL 409
+A P+ + +A L
Sbjct: 47 -------------------------QRGLALHPGH-PEAVARLGRVRWTQQRHAEAAVLL 80
Query: 410 SNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVE 469
P G+ E A A +A Q+ P
Sbjct: 81 QQASDAAPE------------HPGIA--LWLGHALEDAGQAEAAAAAYTRAHQLLPEEPY 126
Query: 470 VAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGL-RFDPSNSVLYCNRAACWFKLG 528
+ L N + R + + A +G+ +P + AA
Sbjct: 127 ITAQLLNWR-----RRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLSEDASAAEQLACA 181
Query: 529 Q-WERSVEDSNQALLIQPNYTKALLR 553
+ +++ S + L +K LR
Sbjct: 182 RTRAQAIAASVRPLAPTRVRSKGPLR 207
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457 | Back alignment and structure |
|---|
Score = 81.6 bits (201), Expect = 2e-16
Identities = 27/142 (19%), Positives = 56/142 (39%), Gaps = 15/142 (10%)
Query: 476 NVKLVARARARGNDLFKSERFTEACQAYGEGLRF---------------DPSNSVLYCNR 520
++ A + +G FK ++ +A YG+ + + + + N
Sbjct: 264 KLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNL 323
Query: 521 AACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPD 580
A C+ KL ++ ++VE ++AL + K L RR + + ++ A DFE + P
Sbjct: 324 AMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ 383
Query: 581 DNEIAESLFHAQVSLKKSRGEE 602
+ + Q K+ +
Sbjct: 384 NKAARLQISMCQKKAKEHNERD 405
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457 | Back alignment and structure |
|---|
Score = 57.8 bits (139), Expect = 7e-09
Identities = 22/138 (15%), Positives = 48/138 (34%), Gaps = 19/138 (13%)
Query: 244 ELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAF---------------RSNRAAALTG 288
+K G ++ G + +A+ Y K +S N A
Sbjct: 270 IVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLK 329
Query: 289 LGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPT--EVH 346
L +AV+ C++A+ LD + R G + + + E+A+ + +P
Sbjct: 330 LREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDF-EKVLEVNPQNKAAR 388
Query: 347 R-LQVVEKHLSKCTDARK 363
+ + +K + + +
Sbjct: 389 LQISMCQKKAKEHNERDR 406
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457 | Back alignment and structure |
|---|
Score = 43.9 bits (103), Expect = 2e-04
Identities = 22/151 (14%), Positives = 49/151 (32%), Gaps = 36/151 (23%)
Query: 346 HRLQVVEKHLSKCTDARKVGDWKSALREGDAA---IAAGADFSPQ--------------- 387
+L+ K T K G + A+ + + S +
Sbjct: 263 EKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLN 322
Query: 388 LSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMAL 447
L+MC LKL + A ++ + + + R + ++ +
Sbjct: 323 LAMC----YLKLREYTKAVECCDKALGLDSANE------------KGL--YRRGEAQLLM 364
Query: 448 GRFENAVTAAEKAGQIDPRNVEVAVLLNNVK 478
FE+A EK +++P+N + ++ +
Sbjct: 365 NEFESAKGDFEKVLEVNPQNKAARLQISMCQ 395
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 73.6 bits (182), Expect = 4e-16
Identities = 20/91 (21%), Positives = 35/91 (38%), Gaps = 2/91 (2%)
Query: 241 DAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECE 300
+ EE G Y G + E++ +++KAI L P + + + AL L R EAV
Sbjct: 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYN 64
Query: 301 EAVRLDPNYWR--AHQRLGSLLVRLGQVENA 329
+ + + + L + E
Sbjct: 65 YVINVIEDEYNKDVWAAKADALRYIEGKEVE 95
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 70.2 bits (173), Expect = 7e-15
Identities = 21/117 (17%), Positives = 43/117 (36%), Gaps = 16/117 (13%)
Query: 433 EAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFK 492
E Y ++ ++ G + ++ EKA Q+DP + +G L+
Sbjct: 7 EEY--YLEGVLQYDAGNYTESIDLFEKAIQLDPEESKY---WLM---------KGKALYN 52
Query: 493 SERFTEACQAYGEGLRF--DPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNY 547
ER+ EA Y + D N ++ +A + E E + ++ ++
Sbjct: 53 LERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHH 109
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 68.6 bits (169), Expect = 3e-14
Identities = 15/112 (13%), Positives = 38/112 (33%), Gaps = 14/112 (12%)
Query: 463 IDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAA 522
+ +N E G + + +TE+ + + ++ DP S + +
Sbjct: 1 MVDQNPEE---YYL---------EGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGK 48
Query: 523 CWFKLGQWERSVEDSNQALLIQPNYT--KALLRRAASNSKLEKWADAVRDFE 572
+ L ++E +V+ N + + + +A + +E E
Sbjct: 49 ALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAE 100
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 65.2 bits (160), Expect = 4e-13
Identities = 13/64 (20%), Positives = 26/64 (40%), Gaps = 2/64 (3%)
Query: 248 MGNELYRKGCFGEALSMYDKAISLAP--RNAAFRSNRAAALTGLGRIGEAVKECEEAVRL 305
G LY + EA+ Y+ I++ N + +A AL + + E +L
Sbjct: 46 KGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKL 105
Query: 306 DPNY 309
+ ++
Sbjct: 106 EHHH 109
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 51.3 bits (124), Expect = 3e-08
Identities = 13/57 (22%), Positives = 21/57 (36%)
Query: 273 PRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVRLGQVENA 329
+N G E++ E+A++LDP + G L L + E A
Sbjct: 3 DQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEA 59
|
| >3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae} Length = 112 | Back alignment and structure |
|---|
Score = 72.8 bits (179), Expect = 1e-15
Identities = 23/96 (23%), Positives = 42/96 (43%), Gaps = 13/96 (13%)
Query: 612 VEEVSSLEQFRAAVSL---PGVSVVHFKSAS----NLHCKQISPYVETLCG--RYPSINF 662
V E++ EQF + + V++F S CK + E + +++F
Sbjct: 2 VIEINDQEQFTYLTTTAAGDKLIVLYF-HTSWAEP---CKALKQVFEAISNEPSNSNVSF 57
Query: 663 LKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKEIV 698
L +D DE+ ++ + VP F I G+ +KE+
Sbjct: 58 LSIDADENSEISELFEISAVPYFIIIHKGTILKELS 93
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 72.9 bits (179), Expect = 1e-15
Identities = 15/93 (16%), Positives = 22/93 (23%)
Query: 241 DAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECE 300
E G + + EA ++ P + + G A+
Sbjct: 16 YHENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALN 75
Query: 301 EAVRLDPNYWRAHQRLGSLLVRLGQVENARRHL 333
A LDP H L A L
Sbjct: 76 HARMLDPKDIAVHAALAVSHTNEHNANAALASL 108
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 72.1 bits (177), Expect = 2e-15
Identities = 20/110 (18%), Positives = 30/110 (27%), Gaps = 12/110 (10%)
Query: 438 FVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFT 497
+ L A A E Q +P E L G ++E+
Sbjct: 21 MEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSL------------GLTQAENEKDG 68
Query: 498 EACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNY 547
A A DP + ++ A ++ LL QP Y
Sbjct: 69 LAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQY 118
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 55.9 bits (135), Expect = 9e-10
Identities = 12/87 (13%), Positives = 27/87 (31%)
Query: 486 RGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQP 545
G + K EA A+ + +P + + + + ++ N A ++ P
Sbjct: 23 EGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP 82
Query: 546 NYTKALLRRAASNSKLEKWADAVRDFE 572
A S++ A+
Sbjct: 83 KDIAVHAALAVSHTNEHNANAALASLR 109
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 55.2 bits (133), Expect = 2e-09
Identities = 13/70 (18%), Positives = 23/70 (32%)
Query: 240 GDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKEC 299
E + +G G A+ + A L P++ A + A + T A+
Sbjct: 49 EREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASL 108
Query: 300 EEAVRLDPNY 309
+ P Y
Sbjct: 109 RAWLLSQPQY 118
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 | Back alignment and structure |
|---|
Score = 71.9 bits (177), Expect = 1e-15
Identities = 11/94 (11%), Positives = 29/94 (30%), Gaps = 2/94 (2%)
Query: 241 DAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECE 300
D + E + AL+++++ + P + L R +A+
Sbjct: 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYA 65
Query: 301 EAVRLDPNYWRAH--QRLGSLLVRLGQVENARRH 332
+ + + L ++ +E+ H
Sbjct: 66 QGIEVAREEGTQKDLSELQDAKLKAEGLEHHHHH 99
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 | Back alignment and structure |
|---|
Score = 61.5 bits (150), Expect = 6e-12
Identities = 16/58 (27%), Positives = 23/58 (39%)
Query: 273 PRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVRLGQVENAR 330
P + R A A+ EE V DP+Y + LG L RL + ++A
Sbjct: 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAI 61
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 | Back alignment and structure |
|---|
Score = 49.2 bits (118), Expect = 1e-07
Identities = 10/87 (11%), Positives = 26/87 (29%), Gaps = 12/87 (13%)
Query: 464 DPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAAC 523
DP + + K + + A + E + DP Y +
Sbjct: 3 DPED---PFTRYA---------LAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKL 50
Query: 524 WFKLGQWERSVEDSNQALLIQPNYTKA 550
+ +L + + +++ Q + +
Sbjct: 51 YERLDRTDDAIDTYAQGIEVAREEGTQ 77
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 | Back alignment and structure |
|---|
Score = 48.0 bits (115), Expect = 3e-07
Identities = 10/63 (15%), Positives = 21/63 (33%)
Query: 510 DPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVR 569
DP + A K R++ + + P+Y +L++ DA+
Sbjct: 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAID 62
Query: 570 DFE 572
+
Sbjct: 63 TYA 65
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125 | Back alignment and structure |
|---|
Score = 72.8 bits (180), Expect = 1e-15
Identities = 28/77 (36%), Positives = 41/77 (53%)
Query: 248 MGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDP 307
+GN Y++G + EA+ Y KA+ L P NA N A G EA++ ++A+ LDP
Sbjct: 49 LGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 108
Query: 308 NYWRAHQRLGSLLVRLG 324
N A Q LG+ + G
Sbjct: 109 NNAEAKQNLGNAKQKQG 125
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125 | Back alignment and structure |
|---|
Score = 72.4 bits (179), Expect = 2e-15
Identities = 28/82 (34%), Positives = 42/82 (51%)
Query: 248 MGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDP 307
+GN Y++G + EA+ Y KA+ L P NA N A G EA++ ++A+ LDP
Sbjct: 15 LGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 74
Query: 308 NYWRAHQRLGSLLVRLGQVENA 329
N A LG+ + G + A
Sbjct: 75 NNAEAWYNLGNAYYKQGDYDEA 96
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125 | Back alignment and structure |
|---|
Score = 64.7 bits (159), Expect = 7e-13
Identities = 28/104 (26%), Positives = 50/104 (48%), Gaps = 12/104 (11%)
Query: 447 LGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEG 506
G ++ A+ +KA ++DP N E N GN +K + EA + Y +
Sbjct: 22 QGDYDEAIEYYQKALELDPNNAEA---WYN---------LGNAYYKQGDYDEAIEYYQKA 69
Query: 507 LRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKA 550
L DP+N+ + N ++K G ++ ++E +AL + PN +A
Sbjct: 70 LELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEA 113
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125 | Back alignment and structure |
|---|
Score = 55.9 bits (136), Expect = 1e-09
Identities = 26/110 (23%), Positives = 49/110 (44%), Gaps = 11/110 (10%)
Query: 463 IDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAA 522
+DP N A N GN +K + EA + Y + L DP+N+ + N
Sbjct: 3 MDPGNSAEA--WYN---------LGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGN 51
Query: 523 CWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFE 572
++K G ++ ++E +AL + PN +A + K + +A+ ++
Sbjct: 52 AYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQ 101
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125 | Back alignment and structure |
|---|
Score = 48.2 bits (116), Expect = 5e-07
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 270 SLAPRN-AAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVRLGQVEN 328
++ P N A N A G EA++ ++A+ LDPN A LG+ + G +
Sbjct: 2 AMDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDE 61
Query: 329 A 329
A
Sbjct: 62 A 62
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125 | Back alignment and structure |
|---|
Score = 45.1 bits (108), Expect = 5e-06
Identities = 28/134 (20%), Positives = 49/134 (36%), Gaps = 26/134 (19%)
Query: 395 ALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAV 454
A K ++A +++P+ +EA+ + G ++ A+
Sbjct: 18 AYYKQGDYDEAIEYYQKALELDPN------------NAEAW--YNLGNAYYKQGDYDEAI 63
Query: 455 TAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNS 514
+KA ++DP N E N GN +K + EA + Y + L DP+N+
Sbjct: 64 EYYQKALELDPNNAEA---WYN---------LGNAYYKQGDYDEAIEYYQKALELDPNNA 111
Query: 515 VLYCNRAACWFKLG 528
N K G
Sbjct: 112 EAKQNLGNAKQKQG 125
|
| >2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis} Length = 121 | Back alignment and structure |
|---|
Score = 72.4 bits (178), Expect = 1e-15
Identities = 34/123 (27%), Positives = 56/123 (45%), Gaps = 12/123 (9%)
Query: 599 RGEEVYN--MKFGGEVEEVSSLEQFRAAVSLPGVSVVHFKSAS----NLHCKQISPYVET 652
RG ++ + G V+ +SS +QF+ V V+ F A+ CK I P E
Sbjct: 2 RGSHHHHHHLVPRGSVQVISSYDQFKQVTGGDKVVVIDF-WATWCGP---CKMIGPVFEK 57
Query: 653 LCGRYPSIN--FLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKEIVCPSRDMLEHSVR 710
+ F KVD+DE +A +R +PTF +KNG ++ +V L+ ++
Sbjct: 58 ISDTPAGDKVGFYKVDVDEQSQIAQEVGIRAMPTFVFFKNGQKIDTVVGADPSKLQAAIT 117
Query: 711 HYS 713
+S
Sbjct: 118 QHS 120
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213 | Back alignment and structure |
|---|
Score = 75.1 bits (185), Expect = 2e-15
Identities = 29/195 (14%), Positives = 64/195 (32%), Gaps = 33/195 (16%)
Query: 431 LSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDL 490
L EA + + + ++ A+ A + + + N G
Sbjct: 3 LVEAISLWNEGVLAADKKDWKGALDAFSA---VQDPHSRI---CFN---------IGCMY 47
Query: 491 FKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQAL-LIQPNYT- 548
+ TEA +A+ + D +V Y R +++ +++ +++D +AL ++ N
Sbjct: 48 TILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLI 107
Query: 549 --------------KALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAESLFHAQVS 594
+ L A +K E+W A + + + A
Sbjct: 108 DYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRH--SKIDKAMEC 165
Query: 595 LKKSRGEEVYNMKFG 609
+ K + E + G
Sbjct: 166 VWKQKLYEPVVIPVG 180
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213 | Back alignment and structure |
|---|
Score = 65.9 bits (161), Expect = 2e-12
Identities = 17/90 (18%), Positives = 31/90 (34%), Gaps = 3/90 (3%)
Query: 240 GDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKEC 299
+A L G K + AL + ++ N T L + EA K
Sbjct: 4 VEAISLWNEGVLAADKKDWKGALDAFSAVQ---DPHSRICFNIGCMYTILKNMTEAEKAF 60
Query: 300 EEAVRLDPNYWRAHQRLGSLLVRLGQVENA 329
++ D + A+ + G L + + + A
Sbjct: 61 TRSINRDKHLAVAYFQRGMLYYQTEKYDLA 90
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213 | Back alignment and structure |
|---|
Score = 61.3 bits (149), Expect = 7e-11
Identities = 14/71 (19%), Positives = 26/71 (36%), Gaps = 1/71 (1%)
Query: 248 MGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVR-LD 306
+G EA + ++I+ A R + A+K+ +EA+ L
Sbjct: 43 IGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLR 102
Query: 307 PNYWRAHQRLG 317
N ++ LG
Sbjct: 103 GNQLIDYKILG 113
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213 | Back alignment and structure |
|---|
Score = 46.6 bits (111), Expect = 8e-06
Identities = 9/78 (11%), Positives = 18/78 (23%), Gaps = 16/78 (20%)
Query: 248 MGNELYRKGCFGEALSMYDKAISLAPRNAAF----------------RSNRAAALTGLGR 291
G Y+ + A+ +A+ N N A
Sbjct: 77 RGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEE 136
Query: 292 IGEAVKECEEAVRLDPNY 309
+A ++ A +
Sbjct: 137 WKKAEEQLALATSMKSEP 154
|
| >2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis} Length = 118 | Back alignment and structure |
|---|
Score = 71.3 bits (175), Expect = 3e-15
Identities = 11/56 (19%), Positives = 25/56 (44%)
Query: 643 CKQISPYVETLCGRYPSINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKEIV 698
C+++ + ++ + F+KVD+D++ A A V +P K + +
Sbjct: 38 CQRLGQILPSIAEANKDVTFIKVDVDKNGNAADAYGVSSIPALFFVKKEGNEIKTL 93
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91 | Back alignment and structure |
|---|
Score = 70.1 bits (173), Expect = 5e-15
Identities = 28/77 (36%), Positives = 41/77 (53%)
Query: 248 MGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDP 307
+GN Y++G + EA+ Y KA+ L P NA N A G EA++ ++A+ LDP
Sbjct: 15 LGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 74
Query: 308 NYWRAHQRLGSLLVRLG 324
N A Q LG+ + G
Sbjct: 75 NNAEAKQNLGNAKQKQG 91
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91 | Back alignment and structure |
|---|
Score = 50.9 bits (123), Expect = 3e-08
Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 11/90 (12%)
Query: 461 GQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNR 520
G +DP N A N GN +K + EA + Y + L DP+N+ + N
Sbjct: 1 GAMDPGNSAEA--WYN---------LGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNL 49
Query: 521 AACWFKLGQWERSVEDSNQALLIQPNYTKA 550
++K G ++ ++E +AL + PN +A
Sbjct: 50 GNAYYKQGDYDEAIEYYQKALELDPNNAEA 79
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91 | Back alignment and structure |
|---|
Score = 46.2 bits (111), Expect = 1e-06
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 270 SLAPRN-AAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVRLGQVEN 328
++ P N A N A G EA++ ++A+ LDPN A LG+ + G +
Sbjct: 2 AMDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDE 61
Query: 329 A 329
A
Sbjct: 62 A 62
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91 | Back alignment and structure |
|---|
Score = 40.8 bits (97), Expect = 7e-05
Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 12/82 (14%)
Query: 447 LGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEG 506
G ++ A+ +KA ++DP N E N GN +K + EA + Y +
Sbjct: 22 QGDYDEAIEYYQKALELDPNNAEA---WYN---------LGNAYYKQGDYDEAIEYYQKA 69
Query: 507 LRFDPSNSVLYCNRAACWFKLG 528
L DP+N+ N K G
Sbjct: 70 LELDPNNAEAKQNLGNAKQKQG 91
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 72.6 bits (178), Expect = 5e-15
Identities = 28/172 (16%), Positives = 61/172 (35%), Gaps = 18/172 (10%)
Query: 440 RAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEA 499
+ E + A + + +P+N E LL G ++ +
Sbjct: 16 PLHQFASQQNPEAQLQALQDKIRANPQNSEQWALL------------GEYYLWQNDYSNS 63
Query: 500 CQAYGEGLRFDPSNSVLYCNRAACWFKLGQ---WERSVEDSNQALLIQPNYTKALLRRAA 556
AY + L+ N+ LY A + ++ ++AL + N AL+ A+
Sbjct: 64 LLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLAS 123
Query: 557 SNSKLEKWADAVRDFEVLRRELPDDNE---IAESLFHAQVSLKKSRGEEVYN 605
+A A+ ++ + + ES+ A++ ++S E ++
Sbjct: 124 DAFMQANYAQAIELWQKVMDLNSPRINRTQLVESINMAKLLQRRSDLEHHHH 175
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 48.7 bits (116), Expect = 9e-07
Identities = 19/104 (18%), Positives = 39/104 (37%), Gaps = 8/104 (7%)
Query: 237 ICGGDAEELKRMGNELYRKG---CFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIG 293
+ G +AE + LY + + +M DKA++L A+
Sbjct: 73 LRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYA 132
Query: 294 EAVKECEEAVRLDPNYWRAHQRLGSL-----LVRLGQVENARRH 332
+A++ ++ + L+ Q + S+ L R +E+ H
Sbjct: 133 QAIELWQKVMDLNSPRINRTQLVESINMAKLLQRRSDLEHHHHH 176
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 46.8 bits (111), Expect = 5e-06
Identities = 12/111 (10%), Positives = 32/111 (28%), Gaps = 10/111 (9%)
Query: 241 DAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECE 300
+ + + ++ + L I P+N+ + ++
Sbjct: 9 EYQRQRDPLHQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYR 68
Query: 301 EAVRLDPNYWRAHQRLGSLLVRLGQ---VENARRHLCLSGQQA---DPTEV 345
+A++L + L ++L R + +A D E+
Sbjct: 69 QALQLRGENAELYAALATVLYYQASQHMTAQTRAMI----DKALALDSNEI 115
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 41.8 bits (98), Expect = 2e-04
Identities = 18/229 (7%), Positives = 51/229 (22%), Gaps = 58/229 (25%)
Query: 265 YDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVRLG 324
+ + R + ++ ++ +R +P LG +
Sbjct: 3 WQAVRAEYQRQR----DPLHQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQN 58
Query: 325 QVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADF 384
N+ +QA + + +
Sbjct: 59 DYSNSLLAY----RQA-------------------LQLRGENAELYAALATVLYYQA--- 92
Query: 385 SPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIE 444
H + + ++ +E + A
Sbjct: 93 -------------SQHMTAQTRAMIDKALALDS--------------NEITALMLLASDA 125
Query: 445 MALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKS 493
+ A+ +K ++ + L+ ++ + A+ R +DL
Sbjct: 126 FMQANYAQAIELWQKVMDLNSPRINRTQLVESINM-AKLLQRRSDLEHH 173
|
| >2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus} Length = 135 | Back alignment and structure |
|---|
Score = 71.4 bits (175), Expect = 5e-15
Identities = 23/102 (22%), Positives = 43/102 (42%), Gaps = 8/102 (7%)
Query: 600 GEEVYNMKFGGEVEEVSSLEQFRAAV---SLPGVSVVHFKSASNLHCKQISPYVETLCGR 656
G + KFG E+ E+S Q+ V V+H +S C ++ ++ L +
Sbjct: 1 GSSGSSGKFG-ELREISG-NQYVNEVTNAEKDLWVVIHLYRSSVPMCLVVNQHLSVLARK 58
Query: 657 YPSINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKEIV 698
+P F+K ++ + +PT +YKNG + +
Sbjct: 59 FPETKFVKAIVNS---CIEHYHDNCLPTIFVYKNGQIEGKFI 97
|
| >3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens} Length = 118 | Back alignment and structure |
|---|
Score = 70.9 bits (174), Expect = 5e-15
Identities = 21/95 (22%), Positives = 41/95 (43%), Gaps = 8/95 (8%)
Query: 607 KFGGEVEEVSSLEQFRAAV---SLPGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFL 663
KFG E+ E+S Q+ V ++H +S C ++ ++ L ++P F+
Sbjct: 1 KFG-ELREISG-NQYVNEVTNAEEDVWVIIHLYRSSIPMCLLVNQHLSLLARKFPETKFV 58
Query: 664 KVDIDESPGVAHAENVRIVPTFKIYKNGSRMKEIV 698
K ++ + +PT +YKNG + +
Sbjct: 59 KAIVNS---CIQHYHDNCLPTIFVYKNGQIEAKFI 90
|
| >2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A Length = 111 | Back alignment and structure |
|---|
Score = 68.5 bits (168), Expect = 3e-14
Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 643 CKQISPYVETLCGRYPSINFLKVDID-ESPGVAHAENVRIVPTFKIYKNGSRMKEIV 698
K ++P E L Y + FLK+D + E+ +A +R+VPTFKI K S + E+
Sbjct: 39 SKAMAPKYEKLAEEYLDVIFLKLDCNQENKTLAKELGIRVVPTFKILKENSVVGEVT 95
|
| >1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1 Length = 124 | Back alignment and structure |
|---|
Score = 68.2 bits (167), Expect = 6e-14
Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 643 CKQISPYVETLCGRYPSINFLKVDID-ESPGVAHAENVRIVPTFKIYKNGSRMKEIV 698
CK ++P E L Y + FLK+D + E+ +A +R+VPTFKI K S + E+
Sbjct: 52 CKAMAPKYEKLAEEYLDVIFLKLDCNQENKTLAKELGIRVVPTFKILKENSVVGEVT 108
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99 | Back alignment and structure |
|---|
Score = 65.5 bits (160), Expect = 2e-13
Identities = 17/81 (20%), Positives = 33/81 (40%), Gaps = 4/81 (4%)
Query: 243 EELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFR-SNRAAALTGLGRIGEAVKECEE 301
++LK EL +G AL ++ + P A LG +A+ +
Sbjct: 2 DQLKT-IKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQS 60
Query: 302 AVRLDPNY--WRAHQRLGSLL 320
A+ L+P+ +A + + +L
Sbjct: 61 AIELNPDSPALQARKMVMDIL 81
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99 | Back alignment and structure |
|---|
Score = 56.6 bits (137), Expect = 3e-10
Identities = 14/66 (21%), Positives = 26/66 (39%), Gaps = 1/66 (1%)
Query: 486 RGNDLFKSERFTEACQAYGEGLRFDPSNSV-LYCNRAACWFKLGQWERSVEDSNQALLIQ 544
+L A QA E L+ +P Y + KLG W++++ + A+ +
Sbjct: 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65
Query: 545 PNYTKA 550
P+
Sbjct: 66 PDSPAL 71
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 1e-05
Identities = 12/50 (24%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Query: 281 NRAAALTGLGRIGEAVKECEEAVRLDP-NYWRAHQRLGSLLVRLGQVENA 329
L G I A++ EE ++ +P A+ +G+ +LG + A
Sbjct: 5 KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKA 54
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99 | Back alignment and structure |
|---|
Score = 40.4 bits (95), Expect = 1e-04
Identities = 16/80 (20%), Positives = 27/80 (33%), Gaps = 11/80 (13%)
Query: 438 FVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFT 497
+ + G ENA+ A E+ Q +P + A GN K +
Sbjct: 4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEA--YYL---------MGNAYRKLGDWQ 52
Query: 498 EACQAYGEGLRFDPSNSVLY 517
+A Y + +P + L
Sbjct: 53 KALNNYQSAIELNPDSPALQ 72
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 63.2 bits (154), Expect = 2e-12
Identities = 16/77 (20%), Positives = 30/77 (38%), Gaps = 6/77 (7%)
Query: 242 AEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEE 301
AE +G+ G + +A ++ + P + A R A L LGR + V+ +
Sbjct: 27 AECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLK 86
Query: 302 AVRLDPN------YWRA 312
+ + Y +A
Sbjct: 87 IIAETSDDETIQSYKQA 103
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 60.5 bits (147), Expect = 2e-11
Identities = 21/111 (18%), Positives = 40/111 (36%), Gaps = 15/111 (13%)
Query: 447 LGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEG 506
LG AV EKA + ++A G+ + +A G
Sbjct: 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLG---------LGSTFRTLGEYRKAEAVLANG 53
Query: 507 LRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPN------YTKAL 551
++ P++ L A + LG++E+ VE + + + Y +A+
Sbjct: 54 VKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYKQAI 104
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 58.6 bits (142), Expect = 9e-11
Identities = 18/88 (20%), Positives = 30/88 (34%), Gaps = 5/88 (5%)
Query: 260 EALSMYDKAISL---APRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRL 316
+A+ Y+KAI+ A + LG +A V+ PN+
Sbjct: 8 QAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFY 67
Query: 317 GSLLVRLGQVENARRHL--CLSGQQADP 342
+L LG+ E L ++ D
Sbjct: 68 AMVLYNLGRYEQGVELLLKIIAETSDDE 95
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 51.3 bits (123), Expect = 4e-08
Identities = 14/95 (14%), Positives = 30/95 (31%), Gaps = 3/95 (3%)
Query: 495 RFTEACQAYGEGLRF---DPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKAL 551
+A Y + + + Y + + LG++ ++ + PN+
Sbjct: 5 LEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALR 64
Query: 552 LRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAE 586
+ A L ++ V + E DD I
Sbjct: 65 VFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQS 99
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 40.9 bits (96), Expect = 2e-04
Identities = 13/48 (27%), Positives = 19/48 (39%), Gaps = 3/48 (6%)
Query: 289 LGRIGEAVKECEEAVRL---DPNYWRAHQRLGSLLVRLGQVENARRHL 333
LG +AV E+A+ + + LGS LG+ A L
Sbjct: 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVL 50
|
| >2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A Length = 110 | Back alignment and structure |
|---|
Score = 62.4 bits (152), Expect = 4e-12
Identities = 13/57 (22%), Positives = 21/57 (36%)
Query: 642 HCKQISPYVETLCGRYPSINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKEIV 698
HCK + ++ R P + VD + P + VPT ++G K
Sbjct: 33 HCKNMEKVLDKFGARAPQVAISSVDSEARPELMKELGFERVPTLVFIRDGKVAKVFS 89
|
| >2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A Length = 104 | Back alignment and structure |
|---|
Score = 58.1 bits (141), Expect = 1e-10
Identities = 19/56 (33%), Positives = 32/56 (57%)
Query: 643 CKQISPYVETLCGRYPSINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKEIV 698
C ++P +E L YP + F K++ DE+P +A V +PT +K+G + EI+
Sbjct: 31 CLILAPIIEELAEDYPQVGFGKLNSDENPDIAARYGVMSLPTVIFFKDGEPVDEII 86
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373 | Back alignment and structure |
|---|
Score = 61.9 bits (150), Expect = 3e-10
Identities = 46/316 (14%), Positives = 97/316 (30%), Gaps = 72/316 (22%)
Query: 248 MGNELYRKGCFGEALSMYDKAISLAPRNAAFRS------NRAAALTGLGRIGEAVKECEE 301
+G L+ KG +L++ + +A ++ + ++ L G + A + E+
Sbjct: 59 LGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEK 118
Query: 302 AVRL--------DPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEK 353
A +L P + + LL +++ A + + +
Sbjct: 119 AFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA 178
Query: 354 HLSKCTDARKVGDWKSA---LREGDAAIAAG---ADFSPQLSMCRVEALLKLHQLEDAES 407
L +C+ AR GD +A L + + G +D+ + RV A +
Sbjct: 179 MLIQCSLAR--GDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAAN 236
Query: 408 SLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRN 467
L + K E + Q ++ A+ ++ LG FE A E+
Sbjct: 237 WLRHTAKPEFANNHFLQGQWR----------NIARAQILLGEFEPAEIVLEE-------- 278
Query: 468 VEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKL 527
L AR+ ++ + +++
Sbjct: 279 -----------LNENARSLR-------LMSDLNRNL--------------LLLNQLYWQA 306
Query: 528 GQWERSVEDSNQALLI 543
G+ + AL +
Sbjct: 307 GRKSDAQRVLLDALKL 322
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373 | Back alignment and structure |
|---|
Score = 57.7 bits (139), Expect = 5e-09
Identities = 53/317 (16%), Positives = 102/317 (32%), Gaps = 33/317 (10%)
Query: 276 AAFRSNRAAALTGLGRIGEAVKECEEAVRLDP---NYWR--AHQRLGSLLVRLGQVENAR 330
A F + RA G EA + + A+ P Y R A LG +L G++ +
Sbjct: 14 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSL 73
Query: 331 RHLCLSGQQADPTEVHRLQVV-EKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQ-- 387
+ + Q A +V + S+ A+ G ++A + A + +
Sbjct: 74 ALMQQTEQMARQHDVWHYALWSLIQQSEILFAQ--GFLQTAWETQEKAFQLINEQHLEQL 131
Query: 388 -----LSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQ 442
L R + L +L++AE+S + ++ S Q + ML Q
Sbjct: 132 PMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML---------IQ 182
Query: 443 IEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLV-ARARARGNDLFKSERFTEACQ 501
+A G +NA + + + + ++N V D + +
Sbjct: 183 CSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANW--LRH 240
Query: 502 AYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLI------QPNYTKALLRRA 555
+ + N A LG++E + + + + LL
Sbjct: 241 TAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLN 300
Query: 556 ASNSKLEKWADAVRDFE 572
+ + +DA R
Sbjct: 301 QLYWQAGRKSDAQRVLL 317
|
| >3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} PDB: 1xbs_A Length = 149 | Back alignment and structure |
|---|
Score = 57.7 bits (139), Expect = 4e-10
Identities = 13/76 (17%), Positives = 25/76 (32%), Gaps = 1/76 (1%)
Query: 628 PGVSVVHFKSASNLHCKQISPYVETLCGRYPS-INFLKVDIDESPGVAHAENVRIVPTFK 686
V V+ F + C Q+ + VD+D++ ++ +P+
Sbjct: 23 EKVLVLRFGRDEDPVCLQLDDILSKTSSDLSKMAAIYLVDVDQTAVYTQYFDISYIPSTV 82
Query: 687 IYKNGSRMKEIVCPSR 702
+ NG MK
Sbjct: 83 FFFNGQHMKVDYGSPD 98
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382 | Back alignment and structure |
|---|
Score = 60.9 bits (147), Expect = 6e-10
Identities = 35/249 (14%), Positives = 77/249 (30%), Gaps = 34/249 (13%)
Query: 225 PENANVNRNRGGICGGDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAA 284
N V R + LK + +L+ E ++ I P+N +R
Sbjct: 128 AANYTVWHFRRVL-------LKSLQKDLH------EEMNYITAIIEEQPKNYQVWHHRRV 174
Query: 285 ALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVRLGQVENA----RRHLCLSGQQA 340
+ L + ++ + + D + A Q ++ +N + L
Sbjct: 175 LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE----- 229
Query: 341 DPTEV---HRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALL 397
D ++ V + + D + ++ I + + ++ +L
Sbjct: 230 DVRNNSVWNQRYFVISNTTGYNDR---AVLEREVQYTLEMIKLVPHN--ESAWNYLKGIL 284
Query: 398 KLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAA 457
+ L + L+ + ++PS S F L + Y + Q + A+
Sbjct: 285 QDRGLSKYPNLLNQLLDLQPSHSSPYLIAF---LVDIYEDMLENQCDNKEDILNKALELC 341
Query: 458 EK-AGQIDP 465
E A + D
Sbjct: 342 EILAKEKDT 350
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382 | Back alignment and structure |
|---|
Score = 59.7 bits (144), Expect = 1e-09
Identities = 23/188 (12%), Positives = 54/188 (28%), Gaps = 31/188 (16%)
Query: 392 RVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGR-F 450
L + + E A + ++ + + R + +L +
Sbjct: 103 FRAVLQRDERSERAFKLTRDAIELNAA--------------NYTVWHFRRVLLKSLQKDL 148
Query: 451 ENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFD 510
+ + P+N +V ++ R + ++ + + L D
Sbjct: 149 HEEMNYITAIIEEQPKNYQV---WHH---------RRVLVEWLRDPSQELEFIADILNQD 196
Query: 511 PSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRD 570
N + +R + W+ ++ +Q L +R S + D
Sbjct: 197 AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDR--- 253
Query: 571 FEVLRREL 578
VL RE+
Sbjct: 254 -AVLEREV 260
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382 | Back alignment and structure |
|---|
Score = 56.2 bits (135), Expect = 1e-08
Identities = 21/139 (15%), Positives = 41/139 (29%), Gaps = 13/139 (9%)
Query: 446 ALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSER-FTEACQAYG 504
R E A A +++ N V + R L ++ E
Sbjct: 109 RDERSERAFKLTRDAIELNAANYTV---WHF---------RRVLLKSLQKDLHEEMNYIT 156
Query: 505 EGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKW 564
+ P N ++ +R L + +E L A R + + W
Sbjct: 157 AIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLW 216
Query: 565 ADAVRDFEVLRRELPDDNE 583
+ ++ + L +E +N
Sbjct: 217 DNELQYVDQLLKEDVRNNS 235
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382 | Back alignment and structure |
|---|
Score = 43.9 bits (103), Expect = 1e-04
Identities = 41/331 (12%), Positives = 84/331 (25%), Gaps = 91/331 (27%)
Query: 268 AISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVRLGQVE 327
I + + A L R A K +A+ L+ + LL L +
Sbjct: 89 QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQK-- 146
Query: 328 NARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQ 387
D + A I P+
Sbjct: 147 --------------------------------------DLHEEMNYITAIIE----EQPK 164
Query: 388 LSMC---RVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIE 444
R + L +++I + + + A+ R +
Sbjct: 165 NYQVWHHRRVLVEWLRDPSQELEFIADILNQDA--------KNY----HAWQH--RQWVI 210
Query: 445 MALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFT------E 498
++N + ++ + D RN V N R + + +
Sbjct: 211 QEFKLWDNELQYVDQLLKEDVRNNSV---WNQ---------RYFVISNTTGYNDRAVLER 258
Query: 499 ACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKA-------- 550
Q E ++ P N + + + NQ L +QP+++
Sbjct: 259 EVQYTLEMIKLVPHNESAWNYLKG-ILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVD 317
Query: 551 ---LLRRAASNSKLEKWADAVRDFEVLRREL 578
+ ++K + A+ E+L +E
Sbjct: 318 IYEDMLENQCDNKEDILNKALELCEILAKEK 348
|
| >3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei} Length = 140 | Back alignment and structure |
|---|
Score = 56.7 bits (137), Expect = 7e-10
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 643 CKQISPYVETLCGRYP-SINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKEIV 698
CK + PY E Y S F +++I +P A V+ PTFK + +G + E V
Sbjct: 39 CKAMEPYFEEYAKEYGSSAVFGRINIATNPWTAEKYGVQGTPTFKFFCHGRPVWEQV 95
|
| >1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1 Length = 123 | Back alignment and structure |
|---|
Score = 54.0 bits (130), Expect = 4e-09
Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Query: 628 PGVSVVHFKSASNLHCKQISPYVETLCGRYP-SINFLKVDIDESPGVAHAENVRIVPTFK 686
P + CK I+P ++ + Y + K++ID++PG A +R +PT
Sbjct: 35 PIEESDDRRYDLVGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLL 94
Query: 687 IYKNGSRMKEIV 698
++KNG V
Sbjct: 95 LFKNGEVAATKV 106
|
| >1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C Length = 105 | Back alignment and structure |
|---|
Score = 53.0 bits (128), Expect = 6e-09
Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 643 CKQISPYVETLCGRYPS-INFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKEIV 698
CK I+P ++ L Y I K++ DE+PG+A N+R +PT +KNG R + I+
Sbjct: 33 CKLIAPVIDELAKEYSGKIAVYKLNTDEAPGIATQYNIRSIPTVLFFKNGERKESII 89
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 | Back alignment and structure |
|---|
Score = 57.7 bits (140), Expect = 6e-09
Identities = 59/391 (15%), Positives = 109/391 (27%), Gaps = 89/391 (22%)
Query: 240 GDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRN----AAFRSNRAAALTGLGRIGEA 295
EL G L + G +S ++ A+ + + +A S A L +A
Sbjct: 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKA 66
Query: 296 VKECEEAVRL------DPNYWRAHQRLGSLLVRLGQVENA----RRHLCLSGQQADPTE- 344
++ + L +A LG+ L LG + A +RHL +S + D
Sbjct: 67 LEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGE 126
Query: 345 ---------VHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEA 395
V+ + K + AA+ + LS+
Sbjct: 127 ARALYNLGNVYHAK--GKSFGCPGPQDVGEFPEEVRDALQAAVDF---YEENLSLVT--- 178
Query: 396 LLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVT 455
L + N+ LG F +AV
Sbjct: 179 --ALGDRAAQGRAFGNL----------------------------GNTHYLLGNFRDAVI 208
Query: 456 AAEKAGQIDPR---NVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFD-- 510
A E+ I +N+ GN F A + Y + L
Sbjct: 209 AHEQRLLIAKEFGDKAAERRAYSNL---------GNAYIFLGEFETASEYYKKTLLLARQ 259
Query: 511 ----PSNSVLYCNRAACWFKLGQWERSVEDSNQALLI------QPNYTKALLRRAASNSK 560
+ + + L +E++++ + L I + +A + +
Sbjct: 260 LKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTA 319
Query: 561 LEKWADAVRDFE---VLRRELPDDNEIAESL 588
L A+ E + RE+ D + +
Sbjct: 320 LGNHDQAMHFAEKHLEISREVGDKSGELTAR 350
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 Length = 273 | Back alignment and structure |
|---|
Score = 56.5 bits (136), Expect = 7e-09
Identities = 26/138 (18%), Positives = 52/138 (37%), Gaps = 8/138 (5%)
Query: 250 NELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNY 309
+G +AL + +AI +P++A+ RS+ L G A ++ ++++L P Y
Sbjct: 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY 64
Query: 310 WRAHQRLGSLLVRLGQVENARRHLCLSGQQA----DPTEVHRLQVVEKHLSKCTDARKVG 365
+L L+ + AR+ A + E+ + V D +V
Sbjct: 65 LPGASQLRHLV----KAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVS 120
Query: 366 DWKSALREGDAAIAAGAD 383
+ + E A+
Sbjct: 121 ELALQIEELRQEKGFLAN 138
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 Length = 273 | Back alignment and structure |
|---|
Score = 42.6 bits (100), Expect = 3e-04
Identities = 21/115 (18%), Positives = 37/115 (32%), Gaps = 16/115 (13%)
Query: 281 NRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQA 340
+ G++ +A++ EA++ P LL G E A L S +
Sbjct: 2 TQWKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKL- 60
Query: 341 DPTEVHRLQVVEKHLSKCTDARK--------------VGDWKSALREGDAAIAAG 381
P E +HL K ARK + +L + ++ +
Sbjct: 61 FP-EYLPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQ 114
|
| >1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1 Length = 85 | Back alignment and structure |
|---|
Score = 52.3 bits (126), Expect = 7e-09
Identities = 18/88 (20%), Positives = 36/88 (40%), Gaps = 6/88 (6%)
Query: 627 LPGVSVVHFKSASNLHCKQISPYVETLCGRYP-SINFLKVDIDESPGVAHAENVRIVPTF 685
+ V + F S HC VE + P ++ +++ E+P A + VPT
Sbjct: 1 MSKVKIELFTSPMCPHCPAAKRVVEEVANEMPDAVEVEYINVMENPQKAMEYGIMAVPTI 60
Query: 686 KIYKNGSRMKEIV-CPSRDMLEHSVRHY 712
I + E + P+++ L +++
Sbjct: 61 VINGDV----EFIGAPTKEALVEAIKKR 84
|
| >2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A Length = 142 | Back alignment and structure |
|---|
Score = 54.0 bits (130), Expect = 7e-09
Identities = 15/90 (16%), Positives = 33/90 (36%), Gaps = 4/90 (4%)
Query: 611 EVEEVSSLEQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFL--KVDID 668
VE S+++ + V GV ++ + L +P ++ D++
Sbjct: 21 PVEA-STVDDWIKRVGD-GVILLSSDPRRTPEVSDNPVMIAELLREFPQFDWQVAVADLE 78
Query: 669 ESPGVAHAENVRIVPTFKIYKNGSRMKEIV 698
+S + NVR P ++ +G +
Sbjct: 79 QSEAIGDRFNVRRFPATLVFTDGKLRGALS 108
|
| >3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} Length = 111 | Back alignment and structure |
|---|
Score = 53.1 bits (128), Expect = 8e-09
Identities = 14/57 (24%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 643 CKQISPYVETLCGRYP-SINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKEIV 698
C++++P +E L Y S F VD++E + +++ VP +K+G ++
Sbjct: 37 CQKVTPVLEELRLNYEESFGFYYVDVEEEKTLFQRFSLKGVPQILYFKDGEYKGKMA 93
|
| >1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor} Length = 112 | Back alignment and structure |
|---|
Score = 53.1 bits (128), Expect = 8e-09
Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 643 CKQISPYVETLCGRYP-SINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKEIV 698
C+QI+P +E + Y I +K++IDE+PG A V +PT +Y+ G K IV
Sbjct: 38 CRQIAPSLEAIAAEYGDKIEIVKLNIDENPGTAAKYGVMSIPTLNVYQGGEVAKTIV 94
|
| >1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1 Length = 107 | Back alignment and structure |
|---|
Score = 52.6 bits (127), Expect = 8e-09
Identities = 19/57 (33%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 643 CKQISPYVETLCGRYPS-INFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKEIV 698
C+ I+P V+ + G Y + +K++ DESP VA +R +PT ++K G + + I+
Sbjct: 34 CRIIAPVVDEIAGEYKDKLKCVKLNTDESPNVASEYGIRSIPTIMVFKGGKKCETII 90
|
| >3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} PDB: 2o7k_A 2o85_A 2o89_A 2o87_A Length = 106 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 8e-09
Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 643 CKQISPYVETLCGRYPS-INFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKEIV 698
CK I+P +E L Y + LK+D+DE+P A V +PT ++K+G + ++V
Sbjct: 34 CKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVV 90
|
| >1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus} Length = 140 | Back alignment and structure |
|---|
Score = 53.6 bits (129), Expect = 1e-08
Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 642 HCKQISPYVETLCGRY-PSINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKEIV 698
C+ +SP +E L + + +KV++DE PG+A VR VPT +++ G+ + V
Sbjct: 64 PCRLVSPILEELARDHAGRLKVVKVNVDEHPGLAARYGVRSVPTLVLFRRGAPVATWV 121
|
| >1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A Length = 105 | Back alignment and structure |
|---|
Score = 52.3 bits (126), Expect = 1e-08
Identities = 12/57 (21%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 643 CKQISPYVETLCGRYP-SINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKEIV 698
C+ ++P +E + + K+++DE+P + +PT ++K G +K+++
Sbjct: 32 CRMMAPVLEEFAEAHADKVTVAKLNVDENPETTSQFGIMSIPTLILFKGGRPVKQLI 88
|
| >2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct} Length = 106 | Back alignment and structure |
|---|
Score = 52.3 bits (126), Expect = 1e-08
Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 643 CKQISPYVETLCGRYPS-INFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKEIV 698
C+ I+P +E L Y + +KV++DE+P A +R +PT ++KNG + +V
Sbjct: 34 CRMIAPIIEELAKEYEGKVKVVKVNVDENPNTAAQYGIRSIPTLLLFKNGQVVDRLV 90
|
| >3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis} Length = 148 | Back alignment and structure |
|---|
Score = 53.2 bits (128), Expect = 1e-08
Identities = 12/58 (20%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 642 HCKQISPYVETLCGRY-PSINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKEIV 698
C+ +P + F+KV+ + P ++ +R +PT +Y+NG + +
Sbjct: 69 PCRSFAPIFAETAAERAGKVRFVKVNTEAEPALSTRFRIRSIPTIMLYRNGKMIDMLN 126
|
| >2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus} Length = 155 | Back alignment and structure |
|---|
Score = 53.6 bits (129), Expect = 1e-08
Identities = 11/58 (18%), Positives = 23/58 (39%), Gaps = 1/58 (1%)
Query: 642 HCKQISPYVETLCGRY-PSINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKEIV 698
C+Q++P + + K+D P VA ++ +P F ++ G +
Sbjct: 78 PCRQMAPQFQAAAATLAGQVRLAKIDTQAHPAVAGRHRIQGIPAFILFHKGRELARAA 135
|
| >2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A Length = 112 | Back alignment and structure |
|---|
Score = 52.3 bits (126), Expect = 2e-08
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 643 CKQISPYVETLCGRYPS-INFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKEIV 698
K I+P +E L + +K+D+DE+ A V +PT + K+G ++ V
Sbjct: 32 SKMIAPVLEELDQEMGDKLKIVKIDVDENQETAGKYGVMSIPTLLVLKDGEVVETSV 88
|
| >3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} Length = 109 | Back alignment and structure |
|---|
Score = 52.0 bits (125), Expect = 2e-08
Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 643 CKQISPYVETLCGRYPS-INFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKEIV 698
C P + + +Y F ++++DE+ +A +V +PT I+ NG + +V
Sbjct: 36 CHLYEPIYKKVAEKYKGKAVFGRLNVDENQKIADKYSVLNIPTTLIFVNGQLVDSLV 92
|
| >2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti} Length = 107 | Back alignment and structure |
|---|
Score = 51.9 bits (125), Expect = 2e-08
Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 643 CKQISPYVETLCGRYPS-INFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKEIV 698
CK I P + + + + KV+ID++P +A VR +PT + ++G + + V
Sbjct: 35 CKMIGPALGEIGKEFAGKVTVAKVNIDDNPETPNAYQVRSIPTLMLVRDGKVIDKKV 91
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372 | Back alignment and structure |
|---|
Score = 56.3 bits (135), Expect = 2e-08
Identities = 28/200 (14%), Positives = 54/200 (27%), Gaps = 10/200 (5%)
Query: 402 LEDAESSLSNIPKIE-PSTVSSSQTRFFGMLSEAYTFFVRAQIEMALG---RFENAVTAA 457
D SLS P + + + T F +A + G A
Sbjct: 163 QNDLLESLSKALNQPWPQRMQETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELL 222
Query: 458 EKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLY 517
+ Q P V +V ++ D + L + S++Y
Sbjct: 223 GEIVQSSPEFTYARAEKALVDIVRHSQ-HPLDEKQLAALNTEIDNIVT-LPELNNLSIIY 280
Query: 518 CNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRE 577
+A G+ + S + N + ++ ++ + +A +
Sbjct: 281 QIKAVSALVKGKTDESYQAINTGIDLEMSWL-NYVLLGKVYEMKGMNREAADAYLTAFNL 339
Query: 578 LPDDNE---IAESLFHAQVS 594
P N I +F V
Sbjct: 340 RPGANTLYWIENGIFQTSVP 359
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372 | Back alignment and structure |
|---|
Score = 49.7 bits (118), Expect = 2e-06
Identities = 11/72 (15%), Positives = 25/72 (34%), Gaps = 3/72 (4%)
Query: 260 EALSMYDKAISLA--PRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLG 317
+ D ++L + +A + G+ E+ + + L+ + W + LG
Sbjct: 259 ALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLG 317
Query: 318 SLLVRLGQVENA 329
+ G A
Sbjct: 318 KVYEMKGMNREA 329
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372 | Back alignment and structure |
|---|
Score = 49.7 bits (118), Expect = 2e-06
Identities = 11/62 (17%), Positives = 14/62 (22%), Gaps = 1/62 (1%)
Query: 248 MGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDP 307
KG E+ + I L + G EA A L P
Sbjct: 283 KAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRP 341
Query: 308 NY 309
Sbjct: 342 GA 343
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372 | Back alignment and structure |
|---|
Score = 45.9 bits (108), Expect = 3e-05
Identities = 11/106 (10%), Positives = 29/106 (27%), Gaps = 13/106 (12%)
Query: 241 DAEELKRMGNELYRKG---CFGEALSMYDKAISLAPRNAAFRSNRAAALTGL-------- 289
++ G A + + + +P R+ +A
Sbjct: 195 ALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDE 254
Query: 290 GRIGEAVKECEEAVRLD--PNYWRAHQRLGSLLVRLGQVENARRHL 333
++ E + V L N +Q + G+ + + + +
Sbjct: 255 KQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAI 300
|
| >2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ... Length = 108 | Back alignment and structure |
|---|
Score = 51.5 bits (124), Expect = 2e-08
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 643 CKQISPYVETLCGRYPS-INFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKEIV 698
CK I+P ++ + Y + K++ID++PG A +R +PT ++KNG V
Sbjct: 35 CKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKV 91
|
| >3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus} Length = 122 | Back alignment and structure |
|---|
Score = 52.0 bits (125), Expect = 3e-08
Identities = 13/58 (22%), Positives = 21/58 (36%), Gaps = 1/58 (1%)
Query: 642 HCKQISPYVETLCGRYP-SINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKEIV 698
C+ +P E L + KVD P ++ P+ K+Y+ K I
Sbjct: 35 PCQNFAPEFELLARMIKGKVRAGKVDCQAYPQTCQKAGIKAYPSVKLYQYERAKKSIW 92
|
| >2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A Length = 121 | Back alignment and structure |
|---|
Score = 52.0 bits (125), Expect = 3e-08
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 643 CKQISPYVETLCGRYP-SINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKEIV 698
CK ++P +E + + K+D+D +P A V +PT ++K+G +K IV
Sbjct: 45 CKMVAPVLEEIATERATDLTVAKLDVDTNPETARNFQVVSIPTLILFKDGQPVKRIV 101
|
| >1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1 Length = 115 | Back alignment and structure |
|---|
Score = 51.5 bits (124), Expect = 3e-08
Identities = 12/57 (21%), Positives = 23/57 (40%), Gaps = 1/57 (1%)
Query: 643 CKQISPYVETLCGRYP-SINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKEIV 698
C+ +SP + Y + +K++ID +P V VP ++ K +
Sbjct: 40 CQLMSPLINLAANTYSDRLKVVKLEIDPNPTTVKKYKVEGVPALRLVKGEQILDSTE 96
|
| >2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A Length = 109 | Back alignment and structure |
|---|
Score = 51.5 bits (124), Expect = 3e-08
Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 643 CKQISPYVETLCGRYP-SINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKEIV 698
C+ I+P +E + Y + K+D+DE+P A V +PT ++K+G ++ +V
Sbjct: 33 CRMIAPILEEIAKEYEGKLLVAKLDVDENPKTAMRYRVMSIPTVILFKDGQPVEVLV 89
|
| >3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum} Length = 128 | Back alignment and structure |
|---|
Score = 52.0 bits (125), Expect = 3e-08
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 643 CKQISPYVETLCGRYP-SINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKEIV 698
C S ++ L Y I LKVD+D++ +A +V+ +PT + KN + +
Sbjct: 57 CTMQSTEMDKLQKYYGKRIYLLKVDLDKNESLARKFSVKSLPTIILLKNKTMLARKD 113
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 56.0 bits (134), Expect = 3e-08
Identities = 54/439 (12%), Positives = 103/439 (23%), Gaps = 160/439 (36%)
Query: 348 LQVVEKHLSKCTDARKVGDW-KSAL--REGDAAIAAGADFSPQLSMCRVEALLKLHQLED 404
L V E D + V D KS L E D I S V L+L
Sbjct: 22 LSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIM-----SKD----AVSGTLRL--FWT 70
Query: 405 AESSLSNIPKIEPSTVSSSQTRFFG-MLSEAYTFFVRA------QIEMALGRFENAVTAA 457
S + + +F +L Y F + Q M +
Sbjct: 71 LLSKQEEMVQ-----------KFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRL 119
Query: 458 EKAGQI-DPRNVEVAVLLNNVKLVARARARGNDLF--------KSERFTEACQAYGEGLR 508
Q+ NV ++ ++ K+ + C +Y +
Sbjct: 120 YNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCK 179
Query: 509 FDPSNSVLYCNRAACWFKLGQWER----------------------------------SV 534
D + W L S+
Sbjct: 180 MD--FKIF-------WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSI 230
Query: 535 EDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPD--DNEIAESL-FHA 591
+ + LL Y LL VL + + + +
Sbjct: 231 QAELRRLLKSKPYENCLL--------------------VLL----NVQNAKAWNAFNLSC 266
Query: 592 QVSLKKSRGEEVYNMKFGGEVEEVS------------SLEQFRAAV-----SLPGVSVVH 634
++ L +R ++V + +S + LP
Sbjct: 267 KI-LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLP------ 319
Query: 635 FKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRM 694
+ +P ++ ++ + +N + + N ++
Sbjct: 320 -REV-----LTTNPRRLSIIAE-----SIRDGLA------TWDNWK-------HVNCDKL 355
Query: 695 KEIVCPSRDMLEHS-VRHY 712
I+ S ++LE + R
Sbjct: 356 TTIIESSLNVLEPAEYRKM 374
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 49.5 bits (117), Expect = 4e-06
Identities = 77/605 (12%), Positives = 152/605 (25%), Gaps = 222/605 (36%)
Query: 154 PNVLPTGNICPSGKILKTGIGLTSNRSSRTDTLGSGMGHYGHGSIMRGGSNHIVGGGSAT 213
V N+ LK L R ++ + G + GS G
Sbjct: 123 NQVFAKYNVSRLQPYLKLRQALLELRPAKNVLI--------DG--V-LGS------G--- 162
Query: 214 SVKSGGSLAVGPENANVNRNRGGICGGDAEELKRMGNELYRKGCFGEALSMYDKAISLAP 273
K+ +A +V + +M +++ + ++L
Sbjct: 163 --KT--WVA-----LDVCL--------SYKVQCKMDFKIF-----------W---LNLK- 190
Query: 274 RNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVRLGQVENARRHL 333
N + + K ++DPN+ ++ +R+ ++ R L
Sbjct: 191 -----NCNSPETV-----LEMLQKLL---YQIDPNWTSRSDHSSNIKLRIHSIQAELRRL 237
Query: 334 CLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRV 393
+ L V+ V +A + S C++
Sbjct: 238 -----LKSKPYENCLLVL----------LNV--Q-------NAKAWNAFNLS-----CKI 268
Query: 394 EALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENA 453
LL +T T F LS A T + L
Sbjct: 269 --LL--------------------TTRFKQVTDF---LSAATTTHIS------LDHHSMT 297
Query: 454 VTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQA-------YGEG 506
+T E LL + R E E
Sbjct: 298 LTPDEVKS-----------LL--------LKYLDCRPQDLPR--EVLTTNPRRLSIIAES 336
Query: 507 LRFDPSNSVLYCNRAACWFKLGQW--ERSVEDSNQALLIQPNYTKALLRRAA---SNSK- 560
+R W + +E S L +P + + R + ++
Sbjct: 337 IRDGL-------ATWDNWKHVNCDKLTTIIESSLNVL--EPAEYRKMFDRLSVFPPSAHI 387
Query: 561 ----LEK-WADAVRDFEVLRRELPDDNEIAESLFHAQVSLKKSRGEEVYN-----MKFGG 610
L W D ++ D + L H ++K E + ++
Sbjct: 388 PTILLSLIWFDVIKS---------DVMVVVNKL-HKYSLVEKQPKESTISIPSIYLELKV 437
Query: 611 EVEEVSSL-----EQFRAAVSLPGVSVV--------------HFKSASNLHCKQISPYVE 651
++E +L + + + ++ H K+ + + V
Sbjct: 438 KLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMV- 496
Query: 652 TLCGRYPSINFL--KVDIDESPGVAHAENVRIVPTFKIYKNGSRMKEIV--CPSRDMLEH 707
+ FL K+ D + A + + K YK I P + L +
Sbjct: 497 -----FLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYK-----PYICDNDPKYERLVN 546
Query: 708 SVRHY 712
++ +
Sbjct: 547 AILDF 551
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 47.9 bits (113), Expect = 1e-05
Identities = 36/267 (13%), Positives = 75/267 (28%), Gaps = 77/267 (28%)
Query: 220 SLAVGPENANVNRNRGGI--CGGDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAA 277
L+V P +A++ + ++ + N+L++ SL +
Sbjct: 377 RLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY--------------SLVEKQ-- 420
Query: 278 FRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVRLGQVE--NARRHLCL 335
++ + E + E L H+ + V+ N +
Sbjct: 421 -PKESTISIPSIYL--ELKVKLENEYAL-------HRSI---------VDHYNIPKTFDS 461
Query: 336 SGQQADPTEVHRLQVVEKHLSKCTDARKVG---------DW-KSALREGDAAIAAGADFS 385
+ + + HL ++ + + +R A A
Sbjct: 462 DDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSIL 521
Query: 386 PQLS--------MCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTF 437
L +C + K +L +A L +PKIE + + S T
Sbjct: 522 NTLQQLKFYKPYICDNDP--KYERLVNA--ILDFLPKIEENLICSKYTDL---------- 567
Query: 438 FVRAQIEMALGRFENAVTAAEKAGQID 464
+ +AL E+ E Q+
Sbjct: 568 -----LRIAL-MAEDEAIFEEAHKQVQ 588
|
| >3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix} Length = 135 | Back alignment and structure |
|---|
Score = 51.7 bits (124), Expect = 4e-08
Identities = 10/65 (15%), Positives = 20/65 (30%), Gaps = 8/65 (12%)
Query: 642 HCKQISPYVETLCGRY--------PSINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSR 693
HC + P + + ++ + + V PT YK G
Sbjct: 45 HCHRDWPQLIQASKEVDVPIVMFIWGSLIGERELSAARLEMNKAGVEGTPTLVFYKEGRI 104
Query: 694 MKEIV 698
+ ++V
Sbjct: 105 VDKLV 109
|
| >2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli} Length = 128 | Back alignment and structure |
|---|
Score = 51.2 bits (123), Expect = 4e-08
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 643 CKQISPYVETLCGRYPS-INFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKEIV 698
K I+P ++ + Y + K++ID++PG A +R +PT ++KNG V
Sbjct: 55 AKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKV 111
|
| >1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A Length = 119 | Back alignment and structure |
|---|
Score = 51.2 bits (123), Expect = 5e-08
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 643 CKQISPYVETLCGRYP-SINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKEIV 698
CK + P +E + + + KVDID+ +A V VPT KNG + + V
Sbjct: 46 CKILGPRLEKMVAKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTVLAMKNGDVVDKFV 102
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 54.6 bits (132), Expect = 5e-08
Identities = 51/376 (13%), Positives = 107/376 (28%), Gaps = 106/376 (28%)
Query: 242 AEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRI-------GE 294
EL G L G ++ + AI + +A + LG +
Sbjct: 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAGTED---LRTLSAIYSQLGNAYFYLGDYNK 104
Query: 295 AVKECEEAVRL------DPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRL 348
A++ + + L ++ LG+ L +G+ + A ++ L
Sbjct: 105 AMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICC----ERH-------L 153
Query: 349 QVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESS 408
+ AR++GD R + +
Sbjct: 154 TL----------ARQLGD-----RLSEG------------------------------RA 168
Query: 409 LSNIPKIEPSTVSSSQTRFFGMLSEA-YTFFVRAQIEMALGRFENAVTAAEKAGQIDPRN 467
L N+ V ++ + G + + V+ + A+ ++ + G
Sbjct: 169 LYNL-----GNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGD----R 219
Query: 468 VEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRF------DPSNSVLYCNRA 521
N+ GN + F A + + E LR + N
Sbjct: 220 GAQGRACGNL---------GNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLG 270
Query: 522 ACWFKLGQWERSVEDSNQALLI------QPNYTKALLRRAASNSKLEKWADAVRDFE--- 572
LGQ+E + E + L + + ++ + + L ++ A+
Sbjct: 271 NSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHL 330
Query: 573 VLRRELPDDNEIAESL 588
+ +EL D A +
Sbjct: 331 AIAQELGDRIGEARAC 346
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 6e-04
Identities = 20/160 (12%), Positives = 47/160 (29%), Gaps = 25/160 (15%)
Query: 445 MALGRFENAVTAAEKAGQI---DPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQ 501
+ LG + + Q + + L G L +
Sbjct: 19 LGLGSGGGGTNSHDGNSQQGSGSDGGSSMCLELALE---------GERLCNAGDCRAGVA 69
Query: 502 AYGEGLRF----DPSNSVLYCNRAACWFKLGQWERSVEDSNQALLI------QPNYTKAL 551
+ ++ + S +Y +F LG + ++++ L + + K+
Sbjct: 70 FFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSS 129
Query: 552 LRRAASNSKLEKWADAVRDFE---VLRRELPDDNEIAESL 588
+ + ++ +A E L R+L D +L
Sbjct: 130 GNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRAL 169
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 Length = 159 | Back alignment and structure |
|---|
Score = 51.4 bits (122), Expect = 7e-08
Identities = 19/113 (16%), Positives = 33/113 (29%), Gaps = 23/113 (20%)
Query: 240 GDAEELKRMGNELYRKGCFGEALSMYDKAISLAPR------------NAAFRSNRAAALT 287
A G + EA + +A+ ++ +A + A AL
Sbjct: 9 VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALA 68
Query: 288 GLGRIGEAVKECEEAVRLDPNYWRAHQ-----------RLGSLLVRLGQVENA 329
GL EA+ ++A+ +Q L LG+ A
Sbjct: 69 GLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEA 121
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 Length = 159 | Back alignment and structure |
|---|
Score = 48.7 bits (115), Expect = 6e-07
Identities = 20/150 (13%), Positives = 44/150 (29%), Gaps = 18/150 (12%)
Query: 431 LSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDL 490
+ AY AQ ++ G ++ A +A +I + L
Sbjct: 8 VVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEAL 67
Query: 491 FKSERFTEACQAYGEGLRFDPSNSVL-----------YCNRAACWFKLGQWERSVEDSNQ 539
F EA + + L + L +RA LG+ ++ + +
Sbjct: 68 AGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKK 127
Query: 540 ALLIQPNY------TKALLRRAASN-SKLE 562
+ + + ++ A ++L
Sbjct: 128 VVEMIEERKGETPGKERMMEVAIDRIAQLG 157
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 Length = 159 | Back alignment and structure |
|---|
Score = 44.5 bits (104), Expect = 2e-05
Identities = 24/82 (29%), Positives = 31/82 (37%), Gaps = 11/82 (13%)
Query: 239 GGDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRS-----------NRAAALT 287
G DA + L F EAL DKA+ R +RA AL
Sbjct: 54 GFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALD 113
Query: 288 GLGRIGEAVKECEEAVRLDPNY 309
GLGR EA+ E ++ V +
Sbjct: 114 GLGRGAEAMPEFKKVVEMIEER 135
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 Length = 159 | Back alignment and structure |
|---|
Score = 41.0 bits (95), Expect = 3e-04
Identities = 19/130 (14%), Positives = 40/130 (30%), Gaps = 3/130 (2%)
Query: 394 EALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENA 453
+ L + ++A ++ +I + G + + A L F+ A
Sbjct: 19 QRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAG--LRSFDEA 76
Query: 454 VTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSN 513
+ +A+KA R E+ + + A R L R EA + + +
Sbjct: 77 LHSADKALHYFNRRGELNQDEGKLWISAVYS-RALALDGLGRGAEAMPEFKKVVEMIEER 135
Query: 514 SVLYCNRAAC 523
+
Sbjct: 136 KGETPGKERM 145
|
| >2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus} Length = 136 | Back alignment and structure |
|---|
Score = 50.9 bits (122), Expect = 7e-08
Identities = 13/57 (22%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Query: 643 CKQISPYVETLCGRYPS-INFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKEIV 698
CK ++P ++ L Y I KVD ++ +A A +R +P+ + +
Sbjct: 53 CKMVAPILDELAKEYDGQIVIYKVDTEKEQELAGAFGIRSIPSILFIPMEGKPEMAQ 109
|
| >3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A Length = 141 | Back alignment and structure |
|---|
Score = 51.0 bits (122), Expect = 8e-08
Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 643 CKQISPYVETLCGRYP-SINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKEIV 698
CK ++P +E L Y I KV++D+ P +A ++ +PT + +
Sbjct: 66 CKMVAPILEELSKEYAGKIYIYKVNVDKEPELARDFGIQSIPTIWFVPMKGEPQVNM 122
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338 | Back alignment and structure |
|---|
Score = 53.8 bits (130), Expect = 8e-08
Identities = 60/379 (15%), Positives = 108/379 (28%), Gaps = 85/379 (22%)
Query: 242 AEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEE 301
EL G L + G +S ++ A+ + + +A + LG + + +
Sbjct: 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTED---LKTLSAIYSQLGNAYFYLHDYAK 61
Query: 302 AVRL-------------DPNYWRAHQRLGSLLVRLGQVENA----RRHLCLSGQQADPTE 344
A+ +A LG+ L LG + A +RHL +S + D
Sbjct: 62 ALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVG 121
Query: 345 V----HRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQ-LSMCRVEALLKL 399
+ L V K D + A+ A D + LS+ L
Sbjct: 122 EARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVT-----AL 176
Query: 400 HQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEK 459
+ N+ LG F +AV A E+
Sbjct: 177 GDRAAQGRAFGNL----------------------------GNTHYLLGNFRDAVIAHEQ 208
Query: 460 AGQIDPR---NVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFD------ 510
I +N+ GN F A + Y + L
Sbjct: 209 RLLIAKEFGDKAAERRAYSNL---------GNAYIFLGEFETASEYYKKTLLLARQLKDR 259
Query: 511 PSNSVLYCNRAACWFKLGQWERSVEDSNQALLI------QPNYTKALLRRAASNSKLEKW 564
+ + + L +E++++ + L I + +A + + L
Sbjct: 260 AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNH 319
Query: 565 ADAVRDFE---VLRRELPD 580
A+ E + RE+ D
Sbjct: 320 DQAMHFAEKHLEISREVGD 338
|
| >3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, alternative splicing, FBP interacting repressor, RRM, electron transport; 2.20A {Escherichia coli O157} Length = 222 | Back alignment and structure |
|---|
Score = 51.8 bits (124), Expect = 1e-07
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 643 CKQISPYVETLCGRYPS-INFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKEIV-CP 700
CK I+P ++ + Y + K++ID++PG A +R +PT ++KNG V
Sbjct: 45 CKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGAL 104
Query: 701 SRDMLEHSVRHY 712
S+ L+ +
Sbjct: 105 SKGQLKEFLDAN 116
|
| >2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 137 | Back alignment and structure |
|---|
Score = 48.7 bits (116), Expect = 5e-07
Identities = 13/64 (20%), Positives = 25/64 (39%), Gaps = 8/64 (12%)
Query: 643 CKQISPYVETLCGRY--PSINFLKVDIDESP------GVAHAENVRIVPTFKIYKNGSRM 694
C+ +P L +Y +NF KVD+ V+ + + +PT +++ G
Sbjct: 41 CQSFAPIYADLSLKYNCTGLNFGKVDVGRYTDVSTRYKVSTSPLTKQLPTLILFQGGKEA 100
Query: 695 KEIV 698
Sbjct: 101 MRRP 104
|
| >1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A Length = 226 | Back alignment and structure |
|---|
Score = 50.5 bits (120), Expect = 5e-07
Identities = 21/96 (21%), Positives = 31/96 (32%), Gaps = 8/96 (8%)
Query: 619 EQFRAAVSLPG-VSVVHFKSASNLHCKQISPYVETLCGRYPS-----INFLKVDIDESPG 672
E +A ++ V ++ F + + +C I V+ E P
Sbjct: 124 ETKQAIRNIDQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEYPE 183
Query: 673 VAHAENVRIVPTFKIYKNGSRMKEIV--CPSRDMLE 706
A NV VP I NG E P + LE
Sbjct: 184 WADQYNVMAVPKIVIQVNGEDRVEFEGAYPEKMFLE 219
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 | Back alignment and structure |
|---|
Score = 51.4 bits (123), Expect = 5e-07
Identities = 28/218 (12%), Positives = 56/218 (25%), Gaps = 22/218 (10%)
Query: 383 DFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQ 442
F QL + +E L I + L + Y+ F R
Sbjct: 59 CFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQKK---------LTGLLKYYSLFFRGM 109
Query: 443 IEMALGRFENAVTAAEKAGQIDPR---NVEVAVLLNNVKLVARARARGNDLFKSERFTEA 499
E + A+ +A + P ++E A V +A
Sbjct: 110 YEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEA--YYHMKQTHVSMYHILQA 167
Query: 500 CQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLI-QPNYTKALLRRAASN 558
Y + A + +++++ AL + + + N
Sbjct: 168 LDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLN 227
Query: 559 -----SKLEKWADAVRDFE-VLR-RELPDDNEIAESLF 589
+ AV F+ + + + + LF
Sbjct: 228 IANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLF 265
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 | Back alignment and structure |
|---|
Score = 45.2 bits (107), Expect = 5e-05
Identities = 37/320 (11%), Positives = 79/320 (24%), Gaps = 77/320 (24%)
Query: 245 LKRMGNELYRKGCFGEALSMYDKAISLAPRN------AAFRSNRAAALTGLGRIGEAVKE 298
L G + + + EA+ Y +A P A F A A + + ++
Sbjct: 104 LFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYH 163
Query: 299 CEEAVRL-------DPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVV 351
+A+ + ++ + + A HL + A L++
Sbjct: 164 ILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHL----EAA-------LEL- 211
Query: 352 EKHLSKCTDARKVGDWKSALREGDAAIAA-----GADFSPQLSMCRVEALLKLHQLEDAE 406
A + + + IA + + + A
Sbjct: 212 ---------AMDIQNDRF--------IAISLLNIANSYD------------RSGDDQMAV 242
Query: 407 SSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPR 466
K+ V + LS G+ + A E+
Sbjct: 243 EHFQKAAKVSREKVPDLLPKVLFGLSWTL---------CKAGQTQKAFQFIEEGLDHITA 293
Query: 467 --NVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACW 524
+ L ++ V + + + Y E + AA +
Sbjct: 294 RSHKFYKELFLFLQAV------YKETVDERKIHDLLS-YFEKKNLHAYIEACARSAAAVF 346
Query: 525 FKLGQWERSVEDSNQALLIQ 544
+E++ + L Q
Sbjct: 347 ESSCHFEQAAAFYRKVLKAQ 366
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 | Back alignment and structure |
|---|
Score = 44.4 bits (105), Expect = 8e-05
Identities = 16/112 (14%), Positives = 35/112 (31%), Gaps = 17/112 (15%)
Query: 242 AEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRI-------GE 294
AE ++ Y ++ +A+ + + + +L + +
Sbjct: 141 AEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDK 200
Query: 295 AVKECEEAVRL------DPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQA 340
A+ E A+ L D + + + R G + A H Q+A
Sbjct: 201 ALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHF----QKA 248
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 | Back alignment and structure |
|---|
Score = 41.7 bits (98), Expect = 6e-04
Identities = 28/222 (12%), Positives = 64/222 (28%), Gaps = 44/222 (19%)
Query: 399 LHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAE 458
+ +AE L + + F ++EAY + + ++
Sbjct: 121 IGYYREAEKELPFVSD------DIEKAEFHFKVAEAY---------YHMKQTHVSMYHIL 165
Query: 459 KAGQI----DPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLR------ 508
+A I ++ L + + + + +A L
Sbjct: 166 QALDIYQNHPLYSIRTIQSLFVI---------AGNYDDFKHYDKALPHLEAALELAMDIQ 216
Query: 509 FDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQ-----PNYTKALLRRAASNSKLEK 563
D ++ N A + + G + +VE +A + K L + + K +
Sbjct: 217 NDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQ 276
Query: 564 WADAVRDFE---VLRRELPDDNEIAESLFHAQVSLKKSRGEE 602
A + E ++ + LF ++ K +E
Sbjct: 277 TQKAFQFIEEGLDHITAR--SHKFYKELFLFLQAVYKETVDE 316
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* Length = 287 | Back alignment and structure |
|---|
Score = 50.6 bits (121), Expect = 7e-07
Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 632 VVHFKSASNLHCKQISPYVETLCGRYP-SINFLKVDIDESPGVAHAENVRIVPTFKIYKN 690
+ +F S + HC Q++P +E+L +Y K+D D +A +R +PT +++N
Sbjct: 30 LFYFWSERSQHCLQLTPILESLAAQYNGQFILAKLDCDAEQMIAAQFGLRAIPTVYLFQN 89
Query: 691 G 691
G
Sbjct: 90 G 90
|
| >3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A Length = 241 | Back alignment and structure |
|---|
Score = 49.8 bits (119), Expect = 9e-07
Identities = 24/101 (23%), Positives = 41/101 (40%), Gaps = 7/101 (6%)
Query: 595 LKKSRGEEVYNMKFGGEVEEVSSLEQFRAAVSLPGVSVVHFKSASNLHCKQISPYVE--- 651
+++ + ++ E F V+ + +V F + HCK+++P E
Sbjct: 117 VREVSQPDWTPPP--EVTLVLTK-ENFDEVVNDADIILVEFYAPWCGHCKKLAPEYEKAA 173
Query: 652 -TLCGRYPSINFLKVDIDESPGVAHAENVRIVPTFKIYKNG 691
L R P I KVD +A +V PT KI++ G
Sbjct: 174 KELSKRSPPIPLAKVDATAETDLAKRFDVSGYPTLKIFRKG 214
|
| >3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A Length = 241 | Back alignment and structure |
|---|
Score = 44.8 bits (106), Expect = 3e-05
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Query: 642 HCKQISP-YVE---TLCGRYPSINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMK 695
HCKQ +P Y + L + P I K+D + +A +V PT KI K G +
Sbjct: 46 HCKQFAPEYEKIANILKDKDPPIPVAKIDATSASVLASRFDVSGYPTIKILKKGQAVD 103
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 Length = 158 | Back alignment and structure |
|---|
Score = 47.1 bits (111), Expect = 2e-06
Identities = 18/103 (17%), Positives = 31/103 (30%), Gaps = 10/103 (9%)
Query: 248 MGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGR----------IGEAVK 297
E R F + + P +A + L L + I EA+
Sbjct: 8 TETEFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAIT 67
Query: 298 ECEEAVRLDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQA 340
+ EEA+ +DP A +G+ + + A
Sbjct: 68 KFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLA 110
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Length = 292 | Back alignment and structure |
|---|
Score = 48.9 bits (116), Expect = 2e-06
Identities = 38/257 (14%), Positives = 71/257 (27%), Gaps = 32/257 (12%)
Query: 242 AEELKRMGNELYRKGCFGEALSMYDKAISLAPRN------AAFRSNRAAALTGLGRIGEA 295
A+ + + A + KA + G A
Sbjct: 37 ADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96
Query: 296 VKECEEAVRL--DPNYWR----AHQRLGSLL-VRLGQVENARRHLCLSGQQADPTEVHRL 348
V E A+++ +R LG +L L A L+G+ + L
Sbjct: 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVAL 156
Query: 349 QVVEKHLSKCTD-ARKVGDWKSAL----REGDAAIAAGADFSPQLSMCRVEALLKLHQ-- 401
K KC D G + A + +++ + L +L
Sbjct: 157 SN--KCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATD 214
Query: 402 LEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAG 461
A +L +P+ S ++ F L +A E + +
Sbjct: 215 AVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVN-------EGDSEQLSEHCKEFDNFM 267
Query: 462 QIDPRNVEVAVLLNNVK 478
++D + +LN +K
Sbjct: 268 RLDKWKIT---ILNKIK 281
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Length = 292 | Back alignment and structure |
|---|
Score = 42.3 bits (99), Expect = 3e-04
Identities = 27/182 (14%), Positives = 48/182 (26%), Gaps = 15/182 (8%)
Query: 240 GDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGE----- 294
G A+ + AI + FR A LG I E
Sbjct: 75 EAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFR-RGANFKFELGEILENDLHD 133
Query: 295 ---AVKECEEAVRL------DPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEV 345
A+ E A + + L GQ A + + +
Sbjct: 134 YAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRL 193
Query: 346 HRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDA 405
+ + + L K D +A R + +F+ +++L+ D+
Sbjct: 194 SQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDS 253
Query: 406 ES 407
E
Sbjct: 254 EQ 255
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} Length = 176 | Back alignment and structure |
|---|
Score = 47.3 bits (112), Expect = 3e-06
Identities = 18/127 (14%), Positives = 38/127 (29%), Gaps = 34/127 (26%)
Query: 241 DAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEA----- 295
E+L + +EL ++G +AL++ + +A L + A
Sbjct: 5 PDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLA 64
Query: 296 -----------------------------VKECEEAVRLDPNYWRAHQRLGSLLVRLGQV 326
+K E+ + +P+ + L ++G+
Sbjct: 65 TIPLEYQDNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRD 124
Query: 327 ENARRHL 333
E A L
Sbjct: 125 EEALELL 131
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} Length = 176 | Back alignment and structure |
|---|
Score = 46.1 bits (109), Expect = 7e-06
Identities = 18/138 (13%), Positives = 42/138 (30%), Gaps = 8/138 (5%)
Query: 281 NRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQA 340
+ + L G +A+ + + L+ Q E A+ L +
Sbjct: 11 KQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY 70
Query: 341 DPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLH 400
L + + ++ ++ + L A + +L+ ++
Sbjct: 71 QDNSYKSLIAKLELHQQAAESPELKRLEQEL--------AANPDNFELACELAVQYNQVG 122
Query: 401 QLEDAESSLSNIPKIEPS 418
+ E+A L NI K+
Sbjct: 123 RDEEALELLWNILKVNLG 140
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} Length = 176 | Back alignment and structure |
|---|
Score = 42.6 bits (100), Expect = 1e-04
Identities = 17/155 (10%), Positives = 42/155 (27%), Gaps = 13/155 (8%)
Query: 432 SEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLF 491
S + + G A+ + +V + A L
Sbjct: 4 SPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAK------ADC------LL 51
Query: 492 KSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKAL 551
++++F A + NS + ++ Q L P+ +
Sbjct: 52 ETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELA 111
Query: 552 LRRAASNSKLEKWADAVRDF-EVLRRELPDDNEIA 585
A +++ + +A+ +L+ L +
Sbjct: 112 CELAVQYNQVGRDEEALELLWNILKVNLGAQDGEV 146
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} Length = 176 | Back alignment and structure |
|---|
Score = 42.3 bits (99), Expect = 2e-04
Identities = 16/117 (13%), Positives = 37/117 (31%)
Query: 481 ARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQA 540
+ + ++L + +A S + +A C + Q+E + E
Sbjct: 7 EQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATI 66
Query: 541 LLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAESLFHAQVSLKK 597
L + + L + + ++ E PD+ E+A L + +
Sbjct: 67 PLEYQDNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGR 123
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383 | Back alignment and structure |
|---|
Score = 48.7 bits (116), Expect = 4e-06
Identities = 29/206 (14%), Positives = 67/206 (32%), Gaps = 22/206 (10%)
Query: 397 LKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTA 456
L+ ++E+ + +I+ + L E Y F R E+ + +A+
Sbjct: 72 LEKMRIEEQPRLSDLLLEIDKKQARLTG------LLEYYFNFFRGMYELDQREYLSAIKF 125
Query: 457 AEKAGQIDPR---NVEVAVLLNNVKLVARARARGNDLFKS-ERFTEACQAYGEGLRFDPS 512
+KA +E A + + S + +A + Y E ++
Sbjct: 126 FKKAESKLIFVKDRIEKAEFFFKMSESYYYM---KQTYFSMDYARQAYEIYKEHEAYNIR 182
Query: 513 NSVLYCNRAACWFKLGQWERSVEDSNQALLI------QPNYTKALLRRAASNSKLEKWAD 566
+ A + L Q+E ++ +A + + L + ++ D
Sbjct: 183 LLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYED 242
Query: 567 AVRDFE---VLRRELPDDNEIAESLF 589
A+ F+ + E + ++ F
Sbjct: 243 AIPYFKRAIAVFEESNILPSLPQAYF 268
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383 | Back alignment and structure |
|---|
Score = 45.2 bits (107), Expect = 5e-05
Identities = 31/248 (12%), Positives = 68/248 (27%), Gaps = 44/248 (17%)
Query: 240 GDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRI------- 292
AE +M Y ++ +A + + A+ +
Sbjct: 141 EKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQY 200
Query: 293 GEAVKECEEAVRL------DPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVH 346
+A+ ++A + R +G Q E+A + ++A
Sbjct: 201 EDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYF----KRA------ 250
Query: 347 RLQVVEKHLSKCTDAR----------KVGDWKSALREGDAAIAAGADFSPQLSMCRVEAL 396
+ V E+ + + K+G A +A + + E L
Sbjct: 251 -IAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFL 309
Query: 397 LKLHQLEDAESSLSN-IPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVT 455
L+ E ++ +E + + F +++ Y F+ A
Sbjct: 310 KSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYYH---------ERKNFQKASA 360
Query: 456 AAEKAGQI 463
K Q+
Sbjct: 361 YFLKVEQV 368
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383 | Back alignment and structure |
|---|
Score = 43.7 bits (103), Expect = 1e-04
Identities = 34/315 (10%), Positives = 86/315 (27%), Gaps = 72/315 (22%)
Query: 248 MGNELYRKGCFGEALSMYDKAISLAPR------NAAFRSNRAAALTGLGRIGEAVKECEE 301
G + + A+ + KA S A F + + + + ++ +
Sbjct: 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQ 168
Query: 302 AVRL-------DPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKH 354
A + + + H + + L Q E+A H Q+A + E
Sbjct: 169 AYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHF----QKA-------YSMAEAE 217
Query: 355 LSKCTDAR---KVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSN 411
R +G K++ + + AI + +++
Sbjct: 218 KQPQLMGRTLYNIGLCKNSQSQYEDAI-------------------PYFK-----RAIAV 253
Query: 412 IPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVA 471
+ + S +F+ QI LG+ + A K + +
Sbjct: 254 FEESN------------ILPSLPQAYFLITQIHYKLGKIDKAHEYHSKG-------MAYS 294
Query: 472 VLLNNVKLVARARARGN--DLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQ 529
+V ++ + E + + E + A + +
Sbjct: 295 QKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYYHERKN 354
Query: 530 WERSVEDSNQALLIQ 544
++++ + ++
Sbjct: 355 FQKASAYFLKVEQVR 369
|
| >1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1 Length = 85 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 4e-06
Identities = 19/83 (22%), Positives = 34/83 (40%), Gaps = 4/83 (4%)
Query: 629 GVSVVHFKSASNLHCKQISPYVETLCGRY-PSINFLKVDIDESPGVAHAENVRIVPTFKI 687
V++ F S + +C V+ + I+ K+DI A + VP I
Sbjct: 2 VVNIEVFTSPTCPYCPMAIEVVDEAKKEFGDKIDVEKIDIMVDREKAIEYGLMAVPAIAI 61
Query: 688 YKNGSRMKEIVCPSRDMLEHSVR 710
NG ++ + PSR+ L ++
Sbjct: 62 --NG-VVRFVGAPSREELFEAIN 81
|
| >3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780 | Back alignment and structure |
|---|
Score = 49.0 bits (116), Expect = 4e-06
Identities = 22/141 (15%), Positives = 46/141 (32%), Gaps = 6/141 (4%)
Query: 562 EKWADAVRDFEVL-----RRELPDDNEIAESLFHAQVSLKKSRGEEVYNMKFGGEVEEVS 616
+ R +EVL R++ E S + +
Sbjct: 62 GDFLKINRAYEVLKDEDLRKKYDKYGEKGLEDNQGGQYESWSYYRYDFGIYDDDPEIITL 121
Query: 617 SLEQFRAAVSLPGVSVVHFKSASNLHCKQISP-YVETLCGRYPSINFLKVDIDESPGVAH 675
+F AAV+ + V+F S + H ++P + E + V+ + +
Sbjct: 122 ERREFDAAVNSGELWFVNFYSPGSSHSHDLAPTWREFAKEVDGLLRIGAVNCGDDRMLCR 181
Query: 676 AENVRIVPTFKIYKNGSRMKE 696
+ V P+ I+++G +
Sbjct: 182 MKGVNSYPSLFIFRSGMAAVK 202
|
| >3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780 | Back alignment and structure |
|---|
Score = 43.6 bits (102), Expect = 2e-04
Identities = 17/93 (18%), Positives = 29/93 (31%), Gaps = 3/93 (3%)
Query: 607 KFGGEVEEV--SSLEQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRY-PSINFL 663
V + S+ + V +V F S + + + P + + IN
Sbjct: 540 LRNPSVVSLTPSTFNELVKQRKHDEVWMVDFYSPWSHPSQVLMPEWKRMARTLTGLINVG 599
Query: 664 KVDIDESPGVAHAENVRIVPTFKIYKNGSRMKE 696
VD + ENV+ P + Y S
Sbjct: 600 SVDCGQYHSFCTQENVQRYPEIRFYPQKSSKAY 632
|
| >3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780 | Back alignment and structure |
|---|
Score = 42.8 bits (100), Expect = 4e-04
Identities = 7/55 (12%), Positives = 19/55 (34%), Gaps = 1/55 (1%)
Query: 642 HCKQISPYVETLCGRY-PSINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMK 695
+ + P + + +D G+ + N++ PT ++ S +
Sbjct: 469 PSRALLPELRKASTLLYGQLKVGTLDCTIHEGLCNMYNIQAYPTTVVFNQSSIHE 523
|
| >3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A Length = 111 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 2e-05
Identities = 13/59 (22%), Positives = 25/59 (42%), Gaps = 4/59 (6%)
Query: 642 HCKQISP-YVE---TLCGRYPSINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKE 696
HCK ++P + E + +VD + +VR PT +++ G ++ E
Sbjct: 35 HCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAERNICSKYSVRGYPTLLLFRGGKKVSE 93
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} Length = 282 | Back alignment and structure |
|---|
Score = 45.9 bits (108), Expect = 2e-05
Identities = 38/300 (12%), Positives = 73/300 (24%), Gaps = 70/300 (23%)
Query: 260 EALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQ-RLGS 318
S+++ A+S+ P + A ++ E D + A R+
Sbjct: 6 RLASLFESAVSMLPMSEA----------------RSLDLFTEITNYDESACDAWIGRIRC 49
Query: 319 LLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALRE----- 373
+ A GQ +Q+ L+ G +
Sbjct: 50 GDTDRVTLFRAWYSRRNFGQ-----LSGSVQISMSTLNARIAI---GGLYGDITYPVTSP 101
Query: 374 GDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSE 433
+ A DA +L P + +
Sbjct: 102 LAITMGFAA------------CEAAQGNYADAMEALEAAPVAGSEHLVA----------- 138
Query: 434 AYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKS 493
+++A + A R+ + + + AG+ + + A + A G
Sbjct: 139 ----WMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGV----------AHGVAAANL 184
Query: 494 ERFTEACQAYGE---GLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKA 550
FTEA + E + + A G +V P A
Sbjct: 185 ALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPEPKVA 244
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307 | Back alignment and structure |
|---|
Score = 46.0 bits (109), Expect = 2e-05
Identities = 31/261 (11%), Positives = 75/261 (28%), Gaps = 41/261 (15%)
Query: 242 AEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEE 301
A E + +A Y + N + A A G + + ++ E
Sbjct: 36 ASEYAKAAVAFKNAKQLEQAKDAYLQEAEAH-ANNRSLFHAAKAFEQAGMMLKDLQRMPE 94
Query: 302 AVRLDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDA 361
AV + ++ + V G + A L +G+ +P ++ + V +
Sbjct: 95 AV-------QYIEKASVMYVENGTPDTAAMALDRAGKLMEPLDLS--KAVHLYQQAAAVF 145
Query: 362 RKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVS 421
+ A + A L++ + ++A +SL +
Sbjct: 146 ENEERLRQA---AELIGKAS------------RLLVRQQKFDEAAASLQKEKSM---YKE 187
Query: 422 SSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNV-EVAVLLNNVKLV 480
+ + +++ + A ++ I + E L + +
Sbjct: 188 MENYP-----TCYKKCIAQVLVQLHRADYVAAQKCVRESYSIPGFSGSEDCAALED---L 239
Query: 481 ARARARGNDLFKSERFTEACQ 501
+A + E+ C+
Sbjct: 240 LQAYDEQD----EEQLLRVCR 256
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307 | Back alignment and structure |
|---|
Score = 42.2 bits (99), Expect = 4e-04
Identities = 38/255 (14%), Positives = 72/255 (28%), Gaps = 59/255 (23%)
Query: 236 GICGGDAEELKRMGNELYRKGCFGEALSMYDKAISLA-----PRNAAFRSNRAAALTGLG 290
A+ ++ G L EA+ +KA + P AA +RA L
Sbjct: 70 RSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEPL 129
Query: 291 RIGEAVKECEEAVRL------DPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTE 344
+ +AV ++A + + LLVR + + A L
Sbjct: 130 DLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASL----------- 178
Query: 345 VHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLED 404
+K S +++ ++ + IA L
Sbjct: 179 -------QKEKSMY---KEMENYPTC---YKKCIAQVL------------VQLHRADYVA 213
Query: 405 AESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQID 464
A+ + I P S L +AY E + ++ +
Sbjct: 214 AQKCVRESYSI-PGFSGSEDCAALEDLLQAYD-------EQDEEQLLRVC----RSPLVT 261
Query: 465 PRNVEVAVLLNNVKL 479
+ + A L ++K+
Sbjct: 262 YMDNDYAKLAISLKV 276
|
| >3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A Length = 481 | Back alignment and structure |
|---|
Score = 46.0 bits (108), Expect = 4e-05
Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
Query: 642 HCKQISPYVETLCGRYPS-INFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKE 696
H K+++P E R + KVD + + V PT KI+++G
Sbjct: 35 HAKRLAPEYEAAATRLKGIVPLAKVDCTANTNTCNKYGVSGYPTLKIFRDGEEAGA 90
|
| >2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens} Length = 126 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 4e-05
Identities = 9/53 (16%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
Query: 643 CKQISPYVETLCGRYP---SINFLKVDIDESPGVAHAENVRIVPTFKIY-KNG 691
C ++ + + +I + +++ +++ +A+ + IVPT K G
Sbjct: 41 CVEMQKELSYVSKEREGKFNIYYARLEEEKNIDLAYKYDANIVPTTVFLDKEG 93
|
| >1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A {Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A Length = 123 | Back alignment and structure |
|---|
Score = 42.8 bits (100), Expect = 5e-05
Identities = 23/109 (21%), Positives = 34/109 (31%), Gaps = 17/109 (15%)
Query: 615 VSSLEQFRAAVSLPGVS--VVHFKSASNLH-------CKQISPYVETLCGRYPS-INFLK 664
VS E+F AV +F + + C Q P V F+
Sbjct: 9 VSGFEEFHRAVEQHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISEGCVFIY 68
Query: 665 VDIDESPGVAHAEN-------VRIVPTFKIYKNGSRMKEIVCPSRDMLE 706
+ E P N V VPT Y ++ E C +++E
Sbjct: 69 CQVGEKPYWKDPNNDFRKNLKVTAVPTLLKYGTPQKLVESECLQANLVE 117
|
| >1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 126 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 5e-05
Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Query: 642 HCKQISPYVETLCGRY--PSINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMK 695
C+ + P E+ +N KVD+ E PG++ + +PT K+G +
Sbjct: 36 ACQNLQPEWESFAEWGEDLEVNIAKVDVTEQPGLSGRFIINALPTIYHCKDGEFRR 91
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203 | Back alignment and structure |
|---|
Score = 42.6 bits (101), Expect = 1e-04
Identities = 16/114 (14%), Positives = 35/114 (30%), Gaps = 17/114 (14%)
Query: 240 GDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRI------- 292
+ L ++G G + A + + L +A + +
Sbjct: 64 AEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDL 123
Query: 293 GEAVKECEEAVRLD------PNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQA 340
A +E E+++ A + LG L + + A++H +A
Sbjct: 124 AGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHW----LRA 173
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 4e-04
Identities = 13/118 (11%), Positives = 34/118 (28%), Gaps = 25/118 (21%)
Query: 240 GDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKEC 299
+ +G F EA + + A + + + AL +G +
Sbjct: 24 TASGARFMLGYVYAFMDRFDEARASFQALQQQA-QKSGDHTAEHRALHQVGMVERMAGNW 82
Query: 300 EEAVRLDPNYWRAHQ-----------------RLGSLLVRLGQVENARRHLCLSGQQA 340
+ A R + + + ++ + G + AR+ +++
Sbjct: 83 DAARRC---FLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEY----EKS 133
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203 | Back alignment and structure |
|---|
Score = 40.7 bits (96), Expect = 7e-04
Identities = 22/103 (21%), Positives = 36/103 (34%), Gaps = 13/103 (12%)
Query: 239 GGDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKE 298
+ + G A Y+K++ A + A + A A GLG + + K
Sbjct: 104 LAASANAYEVATVALHFGDLAGARQEYEKSLVYA-QQADDQVAIACAFRGLGDLAQQEKN 162
Query: 299 CEEAVRLDPNYWRA---HQRLG------SLLVRLGQVENARRH 332
EA + + RA L L+ RL +E+ H
Sbjct: 163 LLEAQQH---WLRARDIFAELEDSEAVNELMTRLNGLEHHHHH 202
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203 | Back alignment and structure |
|---|
Score = 40.3 bits (95), Expect = 8e-04
Identities = 23/178 (12%), Positives = 51/178 (28%), Gaps = 32/178 (17%)
Query: 432 SEAYTFFVRAQIEMALGRFENAVTAAEKAGQI-----DPRNVEVAVLLNNVKLVARARAR 486
+ + F+ + + RF+ A + + Q D L+ V +V R
Sbjct: 24 TASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAE--HRALHQVGMVERMA-- 79
Query: 487 GNDLFKSERFTEACQAYGEGLRF-------DPSNSVLYCNRAACWFKLGQWERSVEDSNQ 539
+ A + + E + S A G + ++ +
Sbjct: 80 -------GNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEK 132
Query: 540 ALLI------QPNYTKALLRRAASNSKLEKWADAVRDFE---VLRRELPDDNEIAESL 588
+L+ Q A + + +A + + + EL D + E +
Sbjct: 133 SLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAELEDSEAVNELM 190
|
| >2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens} Length = 382 | Back alignment and structure |
|---|
Score = 43.4 bits (102), Expect = 2e-04
Identities = 15/69 (21%), Positives = 25/69 (36%), Gaps = 7/69 (10%)
Query: 642 HCKQISPYVETLCGRY-------PSINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRM 694
+ + P E + F +VD D+ +A + PT K+++NG M
Sbjct: 36 FSQMLHPIFEEASDVIKEEFPNENQVVFARVDCDQHSDIAQRYRISKYPTLKLFRNGMMM 95
Query: 695 KEIVCPSRD 703
K R
Sbjct: 96 KREYRGQRS 104
|
| >2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A Length = 504 | Back alignment and structure |
|---|
Score = 43.3 bits (101), Expect = 2e-04
Identities = 13/56 (23%), Positives = 23/56 (41%), Gaps = 2/56 (3%)
Query: 642 HCKQISPYVETLCGRY--PSINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMK 695
HCK ++P +I ++D E+ + N+ P+ KI+KN
Sbjct: 45 HCKNMAPEYVKAAETLVEKNITLAQIDCTENQDLCMEHNIPGFPSLKIFKNSDVNN 100
|
| >1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 133 | Back alignment and structure |
|---|
Score = 40.8 bits (96), Expect = 2e-04
Identities = 13/60 (21%), Positives = 21/60 (35%), Gaps = 5/60 (8%)
Query: 642 HCKQISPYVETLCGRY-----PSINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKE 696
HCK + P + VD + +A +R PT KI++ G +
Sbjct: 39 HCKNLEPEWAAAASEVKEQTKGKVKLAAVDATVNQVLASRYGIRGFPTIKIFQKGESPVD 98
|
| >1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2 Length = 120 | Back alignment and structure |
|---|
Score = 39.6 bits (93), Expect = 5e-04
Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 4/60 (6%)
Query: 642 HCKQISP-YVE---TLCGRYPSINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKEI 697
HCK ++P Y + L I KVD E +A VR PT K ++NG
Sbjct: 38 HCKALAPEYAKAAGKLKAEGSEIRLAKVDATEESDLAQQYGVRGYPTIKFFRNGDTASPK 97
|
| >2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus} Length = 133 | Back alignment and structure |
|---|
Score = 39.3 bits (92), Expect = 7e-04
Identities = 14/59 (23%), Positives = 22/59 (37%), Gaps = 3/59 (5%)
Query: 642 HCKQISPYVETLCGRY---PSINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKEI 697
HCKQ+ P +L +Y + K+D + V PT +G + I
Sbjct: 39 HCKQLEPIYTSLGKKYKGQKDLVIAKMDATANDITNDQYKVEGFPTIYFAPSGDKKNPI 97
|
| >3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A* Length = 116 | Back alignment and structure |
|---|
Score = 38.9 bits (90), Expect = 9e-04
Identities = 16/80 (20%), Positives = 27/80 (33%), Gaps = 8/80 (10%)
Query: 623 AAVSLPGVSVVHFKSASNLHCKQISP-----YVETLCGRYPSINFLKVDIDESPGVAHAE 677
+ ++ F+ L+C + Y T GR + L++ PG+ A
Sbjct: 13 DDDDKAELRLLMFEQPGCLYCARWDAEIAPQYPLTDEGRAAPVQRLQMRDPLPPGLELAR 72
Query: 678 NVRIVPTFKIYKNGSRMKEI 697
V PTF + E
Sbjct: 73 PVTFTPTFVLMAGD---VES 89
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 714 | |||
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 100.0 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 100.0 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 100.0 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 100.0 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.98 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.97 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.97 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 99.97 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.97 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.97 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.96 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.96 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.96 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.96 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.96 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.96 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.96 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.96 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.95 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.94 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.94 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.94 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.94 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.94 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.93 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.93 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.93 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.92 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.92 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.92 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.92 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.92 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.92 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.92 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.91 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.9 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.9 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.9 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.9 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.89 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.89 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.89 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.89 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.88 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.88 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.88 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.88 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.88 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.88 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.87 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.87 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.87 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.87 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.87 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.86 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.86 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.86 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.85 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.85 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.84 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.84 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.84 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.82 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.82 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.82 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.82 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.82 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.82 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.82 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.82 | |
| 3zzx_A | 105 | Thioredoxin; oxidoreductase; 1.88A {Litopenaeus va | 99.81 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.81 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.81 | |
| 2av4_A | 160 | Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECI | 99.81 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.8 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.8 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.8 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.8 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.79 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.79 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.79 | |
| 2qsi_A | 137 | Putative hydrogenase expression/formation protein; | 99.79 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.78 | |
| 2qgv_A | 140 | Hydrogenase-1 operon protein HYAE; alpha-beta prot | 99.78 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.78 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.77 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.76 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.76 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.76 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.76 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 99.75 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.75 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.74 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.74 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.73 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 99.73 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.72 | |
| 3evi_A | 118 | Phosducin-like protein 2; alpha beta, 3-layer(ABA) | 99.72 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.72 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.71 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.71 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.71 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.7 | |
| 4euy_A | 105 | Uncharacterized protein; structural genomics, PSI- | 99.7 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 99.7 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 99.7 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.69 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 99.69 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.69 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 99.69 | |
| 3f3q_A | 109 | Thioredoxin-1; His TAG, electron transport, cytopl | 99.68 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 99.68 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 99.67 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.67 | |
| 3qfa_C | 116 | Thioredoxin; protein-protein complex, rossmann fol | 99.66 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 99.66 | |
| 1gh2_A | 107 | Thioredoxin-like protein; redox-active center, ele | 99.66 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.65 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.65 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 99.64 | |
| 1r26_A | 125 | Thioredoxin; redox-active disulfide, electron tran | 99.64 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.64 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 99.64 | |
| 2oe3_A | 114 | Thioredoxin-3; electron transport, alpha/beta sand | 99.64 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.63 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.63 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 99.63 | |
| 3gix_A | 149 | Thioredoxin-like protein 4B; PRE-mRNA splicing, TX | 99.63 | |
| 2l6c_A | 110 | Thioredoxin; oxidoreductase; NMR {Desulfovibrio vu | 99.63 | |
| 3m9j_A | 105 | Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} | 99.63 | |
| 3d6i_A | 112 | Monothiol glutaredoxin-3; thioredoxin-like, electr | 99.62 | |
| 1xfl_A | 124 | Thioredoxin H1; AT3G51030, structural genomics, pr | 99.62 | |
| 3iv4_A | 112 | Putative oxidoreductase; APC23140, meticillin-resi | 99.62 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.62 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 99.62 | |
| 1ep7_A | 112 | Thioredoxin CH1, H-type; electron transport; 2.10A | 99.61 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 99.61 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 99.61 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 99.6 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 99.6 | |
| 2wz9_A | 153 | Glutaredoxin-3; protein binding; 1.55A {Homo sapie | 99.6 | |
| 2vim_A | 104 | Thioredoxin, TRX; thioredoxin fold, oxidoreductase | 99.6 | |
| 1syr_A | 112 | Thioredoxin; SGPP, structural genomics, PSI, prote | 99.59 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 99.59 | |
| 3gnj_A | 111 | Thioredoxin domain protein; APC92103, STR genomics | 99.59 | |
| 2xc2_A | 117 | Thioredoxinn; oxidoreductase, protein disulfide re | 99.59 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 99.58 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.58 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 99.58 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 99.58 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.58 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.58 | |
| 2voc_A | 112 | Thioredoxin; electron transport, homodimer, disulf | 99.58 | |
| 2vm1_A | 118 | Thioredoxin, thioredoxin H isoform 1.; oxidoreduct | 99.58 | |
| 2ppt_A | 155 | Thioredoxin-2; thiredoxin, zinc finger, oxidoreduc | 99.57 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.57 | |
| 1ti3_A | 113 | Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Popul | 99.57 | |
| 2j23_A | 121 | Thioredoxin; immune protein, autoreactivity, cross | 99.57 | |
| 2pu9_C | 111 | TRX-F, thioredoxin F-type, chloroplast; protein-pr | 99.57 | |
| 3d22_A | 139 | TRXH4, thioredoxin H-type; electron transport, cyt | 99.57 | |
| 2es7_A | 142 | Q8ZP25_salty, putative thiol-disulfide isomerase a | 99.57 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.57 | |
| 3die_A | 106 | Thioredoxin, TRX; electron transport, SWAP domain, | 99.56 | |
| 1xwb_A | 106 | Thioredoxin; dimerization, redox regulation, THI X | 99.56 | |
| 3emx_A | 135 | Thioredoxin; structural genomics, oxidoreductase, | 99.56 | |
| 3tco_A | 109 | Thioredoxin (TRXA-1); disulfide oxidoreductase, ox | 99.56 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 99.56 | |
| 2o8v_B | 128 | Thioredoxin 1; disulfide crosslinked complex, oxid | 99.56 | |
| 1t00_A | 112 | Thioredoxin, TRX; redox regulation, multifunction | 99.56 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 99.56 | |
| 2trx_A | 108 | Thioredoxin; electron transport; 1.68A {Escherichi | 99.55 | |
| 3hz4_A | 140 | Thioredoxin; NYSGXRC, PSI-II, reduced form, protei | 99.55 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 99.55 | |
| 2vlu_A | 122 | Thioredoxin, thioredoxin H isoform 2.; oxidoreduct | 99.55 | |
| 1nsw_A | 105 | Thioredoxin, TRX; thermostability, electron transp | 99.55 | |
| 1qgv_A | 142 | Spliceosomal protein U5-15KD; snRNP, thioredoxin, | 99.55 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 99.55 | |
| 2f51_A | 118 | Thioredoxin; electron transport; 1.90A {Trichomona | 99.55 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 99.55 | |
| 2trc_P | 217 | Phosducin, MEKA, PP33; transducin, beta-gamma, sig | 99.55 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 99.54 | |
| 2dbc_A | 135 | PDCL2, unnamed protein product; phosducin-like pro | 99.54 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 99.54 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.54 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 99.54 | |
| 1faa_A | 124 | Thioredoxin F; electron transport; 1.85A {Spinacia | 99.53 | |
| 3ul3_B | 128 | Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; | 99.53 | |
| 3cxg_A | 133 | Putative thioredoxin; malaria, structural GEN oxid | 99.53 | |
| 1w4v_A | 119 | Thioredoxin, mitochondrial; antioxidant enzyme, mi | 99.53 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 99.53 | |
| 3uvt_A | 111 | Thioredoxin domain-containing protein 5; thioredox | 99.53 | |
| 2e0q_A | 104 | Thioredoxin; electron transport; 1.49A {Sulfolobus | 99.53 | |
| 1dby_A | 107 | Chloroplast thioredoxin M CH2; thioredoxin CH2, ch | 99.53 | |
| 2i4a_A | 107 | Thioredoxin; acidophIle, disulfide exchange, oxido | 99.53 | |
| 1oaz_A | 123 | Thioredoxin 1; immune system, antibody/complex, an | 99.52 | |
| 3p2a_A | 148 | Thioredoxin 2, putative thioredoxin-like protein; | 99.52 | |
| 1a0r_P | 245 | Phosducin, MEKA, PP33; transducin, beta-gamma, sig | 99.52 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.52 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 99.52 | |
| 1thx_A | 115 | Thioredoxin, thioredoxin 2; oxido-reductase, elect | 99.52 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 99.51 | |
| 1fb6_A | 105 | Thioredoxin M; electron transport; 2.10A {Spinacia | 99.51 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 99.51 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 99.51 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 99.51 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 99.5 | |
| 2yzu_A | 109 | Thioredoxin; redox protein, electron transport, st | 99.5 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 99.5 | |
| 2i1u_A | 121 | Thioredoxin, TRX, MPT46; redox protein, electron t | 99.49 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 99.49 | |
| 1x5d_A | 133 | Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC | 99.49 | |
| 3h79_A | 127 | Thioredoxin-like protein; thioredoxin fold, cataly | 99.49 | |
| 2dj1_A | 140 | Protein disulfide-isomerase A4; protein ERP-72, ER | 99.48 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 99.48 | |
| 1v98_A | 140 | Thioredoxin; oxidoreductase, structural genomics, | 99.48 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 99.48 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 99.48 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 99.48 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 99.47 | |
| 3dml_A | 116 | Putative uncharacterized protein; thioredoxin, oxi | 99.47 | |
| 1wmj_A | 130 | Thioredoxin H-type; structural genomics, program f | 99.47 | |
| 3hxs_A | 141 | Thioredoxin, TRXP; electron transport; 2.00A {Bact | 99.47 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 99.46 | |
| 3dxb_A | 222 | Thioredoxin N-terminally fused to PUF60(UHM); spli | 99.46 | |
| 2l57_A | 126 | Uncharacterized protein; structural genomics, unkn | 99.46 | |
| 2dml_A | 130 | Protein disulfide-isomerase A6; thioredoxin domain | 99.46 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 99.46 | |
| 2l5l_A | 136 | Thioredoxin; structural genomics, electron transpo | 99.46 | |
| 1x5e_A | 126 | Thioredoxin domain containing protein 1; TMX, TXND | 99.45 | |
| 1mek_A | 120 | Protein disulfide isomerase; electron transport, r | 99.45 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 99.45 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 99.45 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 99.45 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 99.45 | |
| 3aps_A | 122 | DNAJ homolog subfamily C member 10; thioredoxin fo | 99.44 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 99.44 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 99.44 | |
| 3apq_A | 210 | DNAJ homolog subfamily C member 10; thioredoxin fo | 99.44 | |
| 2dj0_A | 137 | Thioredoxin-related transmembrane protein 2; AVLA2 | 99.44 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 99.44 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 99.44 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 99.44 | |
| 1zma_A | 118 | Bacterocin transport accessory protein; alpha-beta | 99.44 | |
| 1fo5_A | 85 | Thioredoxin; disulfide oxidoreductase, structural | 99.43 | |
| 1nho_A | 85 | Probable thioredoxin; beta sheet, alpha helix, oxi | 99.42 | |
| 2fwh_A | 134 | Thiol:disulfide interchange protein DSBD; thioredo | 99.42 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 99.42 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 99.41 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 99.41 | |
| 3ga4_A | 178 | Dolichyl-diphosphooligosaccharide-protein glycosyl | 99.4 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.4 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 99.4 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 99.4 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 99.4 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 99.39 | |
| 1wou_A | 123 | Thioredoxin -related protein, 14 kDa; electron tra | 99.39 | |
| 3fk8_A | 133 | Disulphide isomerase; APC61824.1, xylella fastidio | 99.39 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 99.38 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 99.37 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 99.36 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 99.35 | |
| 1a8l_A | 226 | Protein disulfide oxidoreductase; PDI, thioredoxin | 99.34 | |
| 2dj3_A | 133 | Protein disulfide-isomerase A4; protein ERP-72, ER | 99.34 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 99.34 | |
| 2djj_A | 121 | PDI, protein disulfide-isomerase; thioredoxin fold | 99.34 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 99.34 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 99.33 | |
| 2djk_A | 133 | PDI, protein disulfide-isomerase; thioredoxin fold | 99.33 | |
| 2yj7_A | 106 | LPBCA thioredoxin; oxidoreductase; 1.65A {Syntheti | 99.01 | |
| 1z6n_A | 167 | Hypothetical protein PA1234; alpha-beta-alpha sand | 99.32 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 99.31 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 99.31 | |
| 3idv_A | 241 | Protein disulfide-isomerase A4; thioredoxin-like f | 99.29 | |
| 2fgx_A | 107 | Putative thioredoxin; NET3, NESG, GFT-glutaredoxin | 99.29 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 99.28 | |
| 1ttz_A | 87 | Conserved hypothetical protein; structural genomic | 99.28 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 99.26 | |
| 3ed3_A | 298 | Protein disulfide-isomerase MPD1; thioredoxin-like | 99.25 | |
| 2lst_A | 130 | Thioredoxin; structural genomics, NEW YORK structu | 98.9 | |
| 3idv_A | 241 | Protein disulfide-isomerase A4; thioredoxin-like f | 99.25 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 99.25 | |
| 2kuc_A | 130 | Putative disulphide-isomerase; structural genomics | 99.23 | |
| 3f9u_A | 172 | Putative exported cytochrome C biogenesis-related; | 99.23 | |
| 2r2j_A | 382 | Thioredoxin domain-containing protein 4; CRFS moti | 99.22 | |
| 1sji_A | 350 | Calsequestrin 2, calsequestrin, cardiac muscle iso | 99.22 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 99.22 | |
| 3q6o_A | 244 | Sulfhydryl oxidase 1; protein disulfide isomerase, | 99.21 | |
| 3f8u_A | 481 | Protein disulfide-isomerase A3ERP57; endoplasmic r | 99.21 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 99.2 | |
| 3kp8_A | 106 | Vkorc1/thioredoxin domain protein; blood coagulati | 99.19 | |
| 1lu4_A | 136 | Soluble secreted antigen MPT53; thioredoxin-like f | 99.18 | |
| 1sen_A | 164 | Thioredoxin-like protein P19; endoplasmic reticulu | 99.18 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 99.17 | |
| 2ju5_A | 154 | Thioredoxin disulfide isomerase; protein, oxidored | 99.17 | |
| 2ywm_A | 229 | Glutaredoxin-like protein; redox protein, structur | 99.17 | |
| 2b5e_A | 504 | Protein disulfide-isomerase; 2.40A {Saccharomyces | 99.17 | |
| 3ph9_A | 151 | Anterior gradient protein 3 homolog; thioredoxin f | 99.16 | |
| 1ilo_A | 77 | Conserved hypothetical protein MTH895; beta-alpha- | 99.15 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 99.15 | |
| 1a8l_A | 226 | Protein disulfide oxidoreductase; PDI, thioredoxin | 99.14 | |
| 3erw_A | 145 | Sporulation thiol-disulfide oxidoreductase A; thio | 99.14 | |
| 3us3_A | 367 | Calsequestrin-1; calcium-binding protein; 1.74A {O | 99.14 | |
| 2qc7_A | 240 | ERP31, ERP28, endoplasmic reticulum protein ERP29; | 99.13 | |
| 2b5x_A | 148 | YKUV protein, TRXY; thioredoxin-like, oxidoreducta | 99.13 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 99.12 | |
| 1zzo_A | 136 | RV1677; thioredoxin fold, structural genomics, PSI | 99.12 | |
| 2c0g_A | 248 | ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, | 99.12 | |
| 2hls_A | 243 | Protein disulfide oxidoreductase; thioredoxin fold | 99.11 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 99.11 | |
| 2f9s_A | 151 | Thiol-disulfide oxidoreductase RESA; thioredoxin-l | 99.09 | |
| 3raz_A | 151 | Thioredoxin-related protein; structural genomics, | 99.08 | |
| 3ia1_A | 154 | THIO-disulfide isomerase/thioredoxin; oxidoreducta | 99.08 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.07 | |
| 2lja_A | 152 | Putative thiol-disulfide oxidoreductase; structura | 99.06 | |
| 3t58_A | 519 | Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2. | 99.06 | |
| 3eyt_A | 158 | Uncharacterized protein SPOA0173; thioredoxin-like | 99.06 | |
| 2h30_A | 164 | Thioredoxin, peptide methionine sulfoxide reductas | 99.06 | |
| 3apo_A | 780 | DNAJ homolog subfamily C member 10; PDI family, th | 99.06 | |
| 3lor_A | 160 | Thiol-disulfide isomerase and thioredoxins; PSI, M | 99.06 | |
| 3ira_A | 173 | Conserved protein; methanosarcina mazei,structural | 99.04 | |
| 3or5_A | 165 | Thiol:disulfide interchange protein, thioredoxin p | 99.03 | |
| 3hcz_A | 148 | Possible thiol-disulfide isomerase; APC61559.2, cy | 99.03 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 99.03 | |
| 4evm_A | 138 | Thioredoxin family protein; structural genomics, n | 99.03 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 99.03 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 99.02 | |
| 3qcp_A | 470 | QSOX from trypanosoma brucei (tbqsox); ERV fold, t | 99.02 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 99.01 | |
| 2lrn_A | 152 | Thiol:disulfide interchange protein; structural ge | 98.99 | |
| 3gl3_A | 152 | Putative thiol:disulfide interchange protein DSBE; | 98.99 | |
| 2b1k_A | 168 | Thiol:disulfide interchange protein DSBE; C-termin | 98.99 | |
| 3f8u_A | 481 | Protein disulfide-isomerase A3ERP57; endoplasmic r | 98.99 | |
| 3fkf_A | 148 | Thiol-disulfide oxidoreductase; structural genomic | 98.98 | |
| 3uem_A | 361 | Protein disulfide-isomerase; thioredoxin-like doma | 98.97 | |
| 1kng_A | 156 | Thiol:disulfide interchange protein CYCY; thioredo | 98.97 | |
| 1wjk_A | 100 | C330018D20RIK protein; glutaredoxin, thioredoxin f | 98.96 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 98.96 | |
| 3eur_A | 142 | Uncharacterized protein; PSI2,MCSG, conserved prot | 98.95 | |
| 3hdc_A | 158 | Thioredoxin family protein; ATCC53774, DSM 7210, , | 98.95 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 98.95 | |
| 2b5e_A | 504 | Protein disulfide-isomerase; 2.40A {Saccharomyces | 98.95 | |
| 2l5o_A | 153 | Putative thioredoxin; structural genomics, unknown | 98.94 | |
| 3ha9_A | 165 | Uncharacterized thioredoxin-like protein; PSI, MCS | 98.94 | |
| 3kh7_A | 176 | Thiol:disulfide interchange protein DSBE; TRX-like | 98.91 | |
| 3kcm_A | 154 | Thioredoxin family protein; SGX, thioredoxin prote | 98.9 | |
| 3fw2_A | 150 | Thiol-disulfide oxidoreductase; structural genomic | 98.9 | |
| 2ywm_A | 229 | Glutaredoxin-like protein; redox protein, structur | 98.89 | |
| 3lwa_A | 183 | Secreted thiol-disulfide isomerase; thioredoxin, P | 98.89 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 98.88 | |
| 3ewl_A | 142 | Uncharacterized conserved protein BF1870; alpha-be | 98.88 | |
| 4fo5_A | 143 | Thioredoxin-like protein; AHPC/TSA family protein, | 98.87 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 98.87 | |
| 2lrt_A | 152 | Uncharacterized protein; structural genomics, thio | 98.86 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 98.86 | |
| 3apo_A | 780 | DNAJ homolog subfamily C member 10; PDI family, th | 98.86 | |
| 2e7p_A | 116 | Glutaredoxin; thioredoxin fold, poplar, electron t | 98.82 | |
| 2cvb_A | 188 | Probable thiol-disulfide isomerase/thioredoxin; re | 98.82 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.82 | |
| 2hyx_A | 352 | Protein DIPZ; thioredoxin fold, jelly-roll, struct | 98.81 | |
| 1hyu_A | 521 | AHPF, alkyl hydroperoxide reductase subunit F; thi | 98.81 | |
| 2ywi_A | 196 | Hypothetical conserved protein; uncharacterized co | 98.8 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 98.79 | |
| 2k8s_A | 80 | Thioredoxin; dimer, structural genomics, PSI-2, pr | 98.79 | |
| 3s9f_A | 165 | Tryparedoxin; thioredoxin fold, disulfide reductas | 98.79 | |
| 2hls_A | 243 | Protein disulfide oxidoreductase; thioredoxin fold | 98.78 | |
| 3kp9_A | 291 | Vkorc1/thioredoxin domain protein; warfarin, disul | 98.78 | |
| 2ls5_A | 159 | Uncharacterized protein; structural genomics, unkn | 98.26 | |
| 2rli_A | 171 | SCO2 protein homolog, mitochondrial; copper protei | 98.75 | |
| 1o8x_A | 146 | Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrot | 98.75 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 98.74 | |
| 1i5g_A | 144 | Tryparedoxin II; electron transport; HET: TS5; 1.4 | 98.74 | |
| 1ego_A | 85 | Glutaredoxin; electron transport; NMR {Escherichia | 98.74 | |
| 2ggt_A | 164 | SCO1 protein homolog, mitochondrial; copper chaper | 98.71 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 98.7 | |
| 1jfu_A | 186 | Thiol:disulfide interchange protein TLPA; thioredo | 98.7 | |
| 1o73_A | 144 | Tryparedoxin; electron transport, trypanosomatid, | 98.69 | |
| 3u5r_E | 218 | Uncharacterized protein; structural genomics, PSI- | 98.69 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 98.68 | |
| 2k6v_A | 172 | Putative cytochrome C oxidase assembly protein; th | 98.66 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 98.65 | |
| 2lus_A | 143 | Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carci | 98.1 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 98.65 | |
| 1we0_A | 187 | Alkyl hydroperoxide reductase C; peroxiredoxin, AH | 98.6 | |
| 3drn_A | 161 | Peroxiredoxin, bacterioferritin comigratory prote | 98.6 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 98.59 | |
| 2dlx_A | 153 | UBX domain-containing protein 7; UAS domain, prote | 98.58 | |
| 3cmi_A | 171 | Peroxiredoxin HYR1; thioredoxin-like fold, oxidore | 98.58 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 98.56 | |
| 2bmx_A | 195 | Alkyl hydroperoxidase C; peroxiredoxin, antioxidan | 98.56 | |
| 1zof_A | 198 | Alkyl hydroperoxide-reductase; decamer, toroide-sh | 98.56 | |
| 2vup_A | 190 | Glutathione peroxidase-like protein; oxidoreductas | 98.54 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 98.54 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 98.52 | |
| 3dwv_A | 187 | Glutathione peroxidase-like protein; alpha beta, 3 | 98.51 | |
| 2v1m_A | 169 | Glutathione peroxidase; selenium, selenocysteine, | 98.5 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 98.5 | |
| 1xvw_A | 160 | Hypothetical protein RV2238C/MT2298; thioredoxin f | 98.5 | |
| 3gyk_A | 175 | 27KDA outer membrane protein; APC61738.2, siliciba | 98.48 | |
| 1r7h_A | 75 | NRDH-redoxin; thioredoxin, glutaredoxin, redox pro | 98.48 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 98.48 | |
| 1h75_A | 81 | Glutaredoxin-like protein NRDH; electron transport | 98.48 | |
| 2p31_A | 181 | CL683, glutathione peroxidase 7; thioredoxin fold, | 98.47 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 98.47 | |
| 2f8a_A | 208 | Glutathione peroxidase 1; thioredoxin fold, struct | 98.44 | |
| 2p5q_A | 170 | Glutathione peroxidase 5; thioredoxin fold, oxidor | 98.42 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 98.42 | |
| 1xvq_A | 175 | Thiol peroxidase; thioredoxin fold, structural gen | 98.41 | |
| 2h01_A | 192 | 2-Cys peroxiredoxin; thioredoxin peroxidase, struc | 98.41 | |
| 2obi_A | 183 | PHGPX, GPX-4, phospholipid hydroperoxide glutathio | 98.39 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 98.39 | |
| 1zye_A | 220 | Thioredoxin-dependent peroxide reductase; catenane | 98.38 | |
| 1kte_A | 105 | Thioltransferase; redox-active center, electron tr | 98.37 | |
| 3uem_A | 361 | Protein disulfide-isomerase; thioredoxin-like doma | 98.37 | |
| 1uul_A | 202 | Tryparedoxin peroxidase homologue; peroxiredoxin, | 98.36 | |
| 2i81_A | 213 | 2-Cys peroxiredoxin; structural genomics consortiu | 98.34 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 98.33 | |
| 2jsy_A | 167 | Probable thiol peroxidase; solution structure, ant | 98.33 | |
| 1eej_A | 216 | Thiol:disulfide interchange protein; oxidoreductas | 98.31 | |
| 1qmv_A | 197 | Human thioredoxin peroxidase-B; peroxiredoxin, sul | 98.31 | |
| 3kij_A | 180 | Probable glutathione peroxidase 8; human PDI-perox | 98.3 | |
| 2hze_A | 114 | Glutaredoxin-1; thioredoxin fold, arsenic, dimethy | 98.28 | |
| 2b7k_A | 200 | SCO1 protein; metallochaperone, cytochrome C oxida | 98.28 | |
| 2gs3_A | 185 | PHGPX, GPX-4, phospholipid hydroperoxide glutathio | 98.24 | |
| 1t3b_A | 211 | Thiol:disulfide interchange protein DSBC; oxidored | 98.23 | |
| 1xzo_A | 174 | BSSCO, hypothetical protein YPMQ; thioredoxin-like | 98.22 | |
| 2cq9_A | 130 | GLRX2 protein, glutaredoxin 2; glutathione-S-trans | 98.21 | |
| 3ztl_A | 222 | Thioredoxin peroxidase; oxidoreductase, reductase, | 98.17 | |
| 2ht9_A | 146 | Glutaredoxin-2; thioredoxin fold, iron-sulfur clus | 98.1 | |
| 3gkn_A | 163 | Bacterioferritin comigratory protein; BCP, PRX, at | 98.06 | |
| 2lqo_A | 92 | Putative glutaredoxin RV3198.1/MT3292; TRX fold, o | 98.05 | |
| 2c0d_A | 221 | Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, th | 98.05 | |
| 2a4v_A | 159 | Peroxiredoxin DOT5; yeast nuclear thiol peroxidase | 98.04 | |
| 4g2e_A | 157 | Peroxiredoxin; redox protein, structural genomics, | 98.03 | |
| 1v58_A | 241 | Thiol:disulfide interchange protein DSBG; reduced | 98.01 | |
| 3ic4_A | 92 | Glutaredoxin (GRX-1); structural genomics, PSI, MC | 97.99 | |
| 3h93_A | 192 | Thiol:disulfide interchange protein DSBA; disulfid | 97.97 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 97.95 | |
| 3a2v_A | 249 | Probable peroxiredoxin; thioredoxin peroxidase, hy | 97.94 | |
| 2pn8_A | 211 | Peroxiredoxin-4; thioredoxin, oxidoreductase, stru | 97.92 | |
| 2i3y_A | 215 | Epididymal secretory glutathione peroxidase; thior | 97.91 | |
| 3hd5_A | 195 | Thiol:disulfide interchange protein DSBA; protein | 97.9 | |
| 1q98_A | 165 | Thiol peroxidase, TPX; structural genomics, NYSGXR | 97.89 | |
| 3me7_A | 170 | Putative uncharacterized protein; electron transfe | 97.88 | |
| 4gqc_A | 164 | Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, f | 97.85 | |
| 1psq_A | 163 | Probable thiol peroxidase; structural genomics, NY | 97.85 | |
| 1n8j_A | 186 | AHPC, alkyl hydroperoxide reductase C22 protein; p | 97.85 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 97.84 | |
| 2r37_A | 207 | Glutathione peroxidase 3; plasma, structural genom | 97.82 | |
| 3ixr_A | 179 | Bacterioferritin comigratory protein; alpha beta p | 97.8 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 97.8 | |
| 2l4c_A | 124 | Endoplasmic reticulum resident protein 27; ERP27, | 97.79 | |
| 3zrd_A | 200 | Thiol peroxidase; oxidoreductase, 2Cys peroxiredox | 97.78 | |
| 3c1r_A | 118 | Glutaredoxin-1; oxidized form, oxidoreductase, cyt | 97.78 | |
| 2yzh_A | 171 | Probable thiol peroxidase; redox protein, antioxid | 97.78 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 97.77 | |
| 3p7x_A | 166 | Probable thiol peroxidase; thioredoxin fold, oxido | 97.73 | |
| 2klx_A | 89 | Glutaredoxin; thioredoxin type domain, ssgcid, ele | 97.69 | |
| 2wfc_A | 167 | Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidan | 97.68 | |
| 2yan_A | 105 | Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {H | 97.68 | |
| 3nzn_A | 103 | Glutaredoxin; structural genomics, PSI2, MCSG, pro | 97.67 | |
| 3qpm_A | 240 | Peroxiredoxin; oxidoreductase, thioredoxin fold, p | 97.66 | |
| 3gv1_A | 147 | Disulfide interchange protein; neisseria gonorrhoe | 97.66 | |
| 1nm3_A | 241 | Protein HI0572; hybrid, peroxiredoxin, glutaredoxi | 97.65 | |
| 3uma_A | 184 | Hypothetical peroxiredoxin protein; nysgrc, PSI bi | 97.63 | |
| 2znm_A | 195 | Thiol:disulfide interchange protein DSBA; thioredo | 97.62 | |
| 3tjj_A | 254 | Peroxiredoxin-4; thioredoxin fold, sulfenylation, | 97.56 | |
| 1fov_A | 82 | Glutaredoxin 3, GRX3; active site disulfide, CIS P | 97.55 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 97.53 | |
| 3hz8_A | 193 | Thiol:disulfide interchange protein DSBA; thiol-ox | 97.52 | |
| 3qmx_A | 99 | Glutaredoxin A, glutaredoxin 3; electron transport | 97.5 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 97.47 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 97.46 | |
| 1tp9_A | 162 | Peroxiredoxin, PRX D (type II); oligomer, thioredo | 97.45 | |
| 3mng_A | 173 | Peroxiredoxin-5, mitochondrial; peroxidase, PRXV, | 97.43 | |
| 4dvc_A | 184 | Thiol:disulfide interchange protein DSBA; pilus as | 97.4 | |
| 2khp_A | 92 | Glutaredoxin; thioredoxin type domain, ssgcid, ele | 97.36 | |
| 3feu_A | 185 | Putative lipoprotein; alpha-beta structure, struct | 97.35 | |
| 3rhb_A | 113 | ATGRXC5, glutaredoxin-C5, chloroplastic; thioredox | 97.34 | |
| 1z6m_A | 175 | Conserved hypothetical protein; structural genomic | 97.32 | |
| 2pwj_A | 171 | Mitochondrial peroxiredoxin; alpha and beta protei | 97.29 | |
| 1xcc_A | 220 | 1-Cys peroxiredoxin; unknown function, structural | 97.28 | |
| 4hde_A | 170 | SCO1/SENC family lipoprotein; structural genomics, | 97.26 | |
| 2rem_A | 193 | Disulfide oxidoreductase; disulfide oxidoreductase | 97.24 | |
| 3h8q_A | 114 | Thioredoxin reductase 3; oxidoreductase, structura | 97.24 | |
| 1prx_A | 224 | HORF6; peroxiredoxin, hydrogen peroxide, redox reg | 97.23 | |
| 3l9v_A | 189 | Putative thiol-disulfide isomerase or thioredoxin; | 97.22 | |
| 3kae_A | 242 | CDC27, possible protein of nuclear scaffold; tetra | 97.21 | |
| 3msz_A | 89 | Glutaredoxin 1; alpha-beta sandwich, center for st | 97.11 | |
| 3ctg_A | 129 | Glutaredoxin-2; reduced form, electron transport, | 97.1 | |
| 2v2g_A | 233 | Peroxiredoxin 6; oxidoreductase, antioxidant enzym | 97.09 | |
| 3keb_A | 224 | Probable thiol peroxidase; structural genomics, AP | 97.09 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 97.05 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 97.03 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 97.0 | |
| 4f9z_D | 227 | Endoplasmic reticulum resident protein 27; thiored | 96.97 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 96.96 |
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-35 Score=309.92 Aligned_cols=344 Identities=21% Similarity=0.290 Sum_probs=316.9
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 005108 241 DAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLL 320 (714)
Q Consensus 241 ~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 320 (714)
+++.++.+|..++..|++++|+.+|+++++.+|+++.+++.+|.++..+|++++|+..|+++++.+|++..++..+|.++
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHhhcCCCC---hHHHH--H---HHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 005108 321 VRLGQVENARRHLCLSGQQAD---PTEVH--R---LQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCR 392 (714)
Q Consensus 321 ~~~g~~~~A~~~~~~al~~~~---~~~~~--~---l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~l 392 (714)
...|++++|+..|++++...+ ..... . +.....+...+..+...|++++|+..++++++..|. ...++..+
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~ 160 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVW-DAELRELR 160 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred HHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-chHHHHHH
Confidence 999999999999999998443 22211 1 122344556688999999999999999999999997 46778889
Q ss_pred HHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHH
Q 005108 393 VEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAV 472 (714)
Q Consensus 393 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 472 (714)
+.++...|++++|+..++++++.+|.+ ..++..+|.++...|++++|+..|+++++.+|++...+.
T Consensus 161 ~~~~~~~~~~~~A~~~~~~~~~~~~~~--------------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 226 (359)
T 3ieg_A 161 AECFIKEGEPRKAISDLKAASKLKSDN--------------TEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFA 226 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCSCC--------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCC--------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHH
Confidence 999999999999999999999999998 789999999999999999999999999999999999988
Q ss_pred HHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCH----HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH
Q 005108 473 LLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNS----VLYCNRAACWFKLGQWERSVEDSNQALLIQPNYT 548 (714)
Q Consensus 473 ~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 548 (714)
.+..+........+|.++...|++++|+..|+++++..|++. .++..+|.++...|++++|+..|+++++.+|+++
T Consensus 227 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~ 306 (359)
T 3ieg_A 227 HYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNV 306 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccH
Confidence 887777777778889999999999999999999999999987 4466799999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhc
Q 005108 549 KALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAESLFHAQVSLKKSR 599 (714)
Q Consensus 549 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~L~~~~~~l~~~~ 599 (714)
.+++.+|.++..+|++++|+++|+++++++|++..+...|..++..+++.+
T Consensus 307 ~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~ 357 (359)
T 3ieg_A 307 NALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLKQSQ 357 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999998887654
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-35 Score=321.99 Aligned_cols=357 Identities=20% Similarity=0.288 Sum_probs=325.0
Q ss_pred cCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHH
Q 005108 235 GGICGGDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQ 314 (714)
Q Consensus 235 ~~~~p~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 314 (714)
...+|+++..++.+|..++..|++++|+.+|+++++.+|++..+++.+|.++..+|++++|+..|+++++.+|++..++.
T Consensus 19 ~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 98 (450)
T 2y4t_A 19 YFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARL 98 (450)
T ss_dssp ----CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHH
Confidence 34678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHhhcCCCChHH-----HHHH---HHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCH
Q 005108 315 RLGSLLVRLGQVENARRHLCLSGQQADPTE-----VHRL---QVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSP 386 (714)
Q Consensus 315 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~-----~~~l---~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~ 386 (714)
.+|.+|..+|++++|+..|++++....... +..+ .....++.++..+...|++++|+..|+++++..|. ..
T Consensus 99 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~ 177 (450)
T 2y4t_A 99 QRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVW-DA 177 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-Ch
Confidence 999999999999999999999988433222 2211 12234667788899999999999999999999997 46
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCC
Q 005108 387 QLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPR 466 (714)
Q Consensus 387 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 466 (714)
.++..++.+|...|++++|+.+|+++++.+|.+ ..++..+|.++...|++++|+..|++++..+|+
T Consensus 178 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 243 (450)
T 2y4t_A 178 ELRELRAECFIKEGEPRKAISDLKAASKLKNDN--------------TEAFYKISTLYYQLGDHELSLSEVRECLKLDQD 243 (450)
T ss_dssp HHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSC--------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC--------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 777789999999999999999999999999998 889999999999999999999999999999999
Q ss_pred CHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCH----HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 005108 467 NVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNS----VLYCNRAACWFKLGQWERSVEDSNQALL 542 (714)
Q Consensus 467 ~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~ 542 (714)
+...+..+..+........+|.++...|++++|+.+|++++++.|+++ .++..+|.++.+.|++++|+..|+++++
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 323 (450)
T 2y4t_A 244 HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQ 323 (450)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999998887777777778889999999999999999999999999984 4889999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhcccccccc
Q 005108 543 IQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAESLFHAQVSLKKSRGEEVYNM 606 (714)
Q Consensus 543 ~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~L~~~~~~l~~~~~~~~~~~ 606 (714)
++|++..+++.+|.++..+|++++|+.+|+++++++|++..++..+..+...+++....+++..
T Consensus 324 ~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~ 387 (450)
T 2y4t_A 324 MEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKI 387 (450)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGG
T ss_pred hCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHH
Confidence 9999999999999999999999999999999999999999999999999998888777666654
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-36 Score=323.78 Aligned_cols=329 Identities=18% Similarity=0.147 Sum_probs=168.8
Q ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 005108 237 ICGGDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRL 316 (714)
Q Consensus 237 ~~p~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l 316 (714)
..|+++..+..+|..++..|++++|+.+++++++.+|.++.+|..+|.+|...|++++|+..|+++++++|++..+|..+
T Consensus 28 ~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 107 (388)
T 1w3b_A 28 QEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINL 107 (388)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHH
Confidence 34555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHcCCHHHHHHHHHhhcCC-CChH-HHHHHH-------------------------HHHHHHHHhHHHHHcCCHHH
Q 005108 317 GSLLVRLGQVENARRHLCLSGQQ-ADPT-EVHRLQ-------------------------VVEKHLSKCTDARKVGDWKS 369 (714)
Q Consensus 317 a~~~~~~g~~~~A~~~~~~al~~-~~~~-~~~~l~-------------------------~~~~~~~~a~~~~~~g~~~~ 369 (714)
|.++...|++++|+..|++++.. ++.. ....+. ....+..++.++...|++++
T Consensus 108 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 187 (388)
T 1w3b_A 108 AAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWL 187 (388)
T ss_dssp HHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 55555555555555555555441 1110 000000 01223334444445555555
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCc
Q 005108 370 ALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGR 449 (714)
Q Consensus 370 Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 449 (714)
|+..|+++++.+|+. ...+..+|.++...|++++|+..|+++++.+|++ ..++..+|.++...|+
T Consensus 188 A~~~~~~al~~~p~~-~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~--------------~~~~~~l~~~~~~~g~ 252 (388)
T 1w3b_A 188 AIHHFEKAVTLDPNF-LDAYINLGNVLKEARIFDRAVAAYLRALSLSPNH--------------AVVHGNLACVYYEQGL 252 (388)
T ss_dssp HHHHHHHHHHHCTTC-HHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTC--------------HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhcCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCC--------------HHHHHHHHHHHHHcCC
Confidence 555555555555442 3334445555555555555555555555555544 4445555555555555
Q ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCC
Q 005108 450 FENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQ 529 (714)
Q Consensus 450 ~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 529 (714)
+++|+..|+++++++|+++.++..+ |.++...|++++|+.+|+++++.+|.+..++..+|.++.+.|+
T Consensus 253 ~~~A~~~~~~al~~~p~~~~~~~~l------------~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 320 (388)
T 1w3b_A 253 IDLAIDTYRRAIELQPHFPDAYCNL------------ANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGN 320 (388)
T ss_dssp HHHHHHHHHHHHHTCSSCHHHHHHH------------HHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHhhCCCCHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCC
Confidence 5555555555555555555544433 5555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005108 530 WERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAESLFHAQ 592 (714)
Q Consensus 530 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~L~~~~ 592 (714)
+++|+..|+++++++|++..+++.+|.+|.+.|++++|+.+|+++++++|++..++..+..++
T Consensus 321 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~ 383 (388)
T 1w3b_A 321 IEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTL 383 (388)
T ss_dssp HHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHH
Confidence 555555555555555555555555555555555555555555555555555555555554443
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-35 Score=314.41 Aligned_cols=327 Identities=18% Similarity=0.162 Sum_probs=235.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCH
Q 005108 247 RMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVRLGQV 326 (714)
Q Consensus 247 ~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~ 326 (714)
.+|..+++.|++++|+..|+++++.+|++..++..++.++...|++++|+..++++++.+|.+..+|..+|.++...|++
T Consensus 4 ~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 4 ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp THHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred hHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCH
Confidence 37889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 005108 327 ENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAE 406 (714)
Q Consensus 327 ~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~ 406 (714)
++|+..|++++...+.. ...+..++..+...|++++|+..|+++++.+|+.. ..+..++.++...|++++|+
T Consensus 84 ~~A~~~~~~al~~~p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~l~~~~~~~g~~~~A~ 155 (388)
T 1w3b_A 84 QEAIEHYRHALRLKPDF-------IDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLY-CVRSDLGNLLKALGRLEEAK 155 (388)
T ss_dssp HHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCT-HHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHHHHHHcCcch-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH-HHHHHHHHHHHHccCHHHHH
Confidence 99999999998722111 12355566667777777777777777777777643 44455777777777777777
Q ss_pred HHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHH--------
Q 005108 407 SSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVK-------- 478 (714)
Q Consensus 407 ~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~-------- 478 (714)
.+|+++++.+|.+ ..+|..+|.++...|++++|+..|+++++++|++...+..+..+.
T Consensus 156 ~~~~~al~~~p~~--------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~ 221 (388)
T 1w3b_A 156 ACYLKAIETQPNF--------------AVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDR 221 (388)
T ss_dssp HHHHHHHHHCTTC--------------HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTH
T ss_pred HHHHHHHHhCCCC--------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHH
Confidence 7777777777776 666777777777777777777777777777777776665552210
Q ss_pred --------------HHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Q 005108 479 --------------LVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQ 544 (714)
Q Consensus 479 --------------~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 544 (714)
....+..+|.++...|++++|+..|+++++.+|+++.++.++|.++.+.|++++|++.|+++++++
T Consensus 222 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 301 (388)
T 1w3b_A 222 AVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC 301 (388)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 001122335556666666666666666666666666666666666666666666666666666666
Q ss_pred CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 005108 545 PNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAESLFHAQVSL 595 (714)
Q Consensus 545 p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~L~~~~~~l 595 (714)
|++..++..+|.++...|++++|+..|+++++++|++..++..+..++...
T Consensus 302 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 352 (388)
T 1w3b_A 302 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQ 352 (388)
T ss_dssp TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTT
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Confidence 666666666666666666666666666666666666655555555554433
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-31 Score=300.56 Aligned_cols=330 Identities=19% Similarity=0.197 Sum_probs=291.4
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 005108 241 DAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLL 320 (714)
Q Consensus 241 ~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 320 (714)
.++.++.+|..++..|+|++|+.+|+++++.+|+++.++..+|.+|..+|++++|+..|+++++++|++..+++.+|.++
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHhhcC-CCChHH-------------------------------------------------------
Q 005108 321 VRLGQVENARRHLCLSGQ-QADPTE------------------------------------------------------- 344 (714)
Q Consensus 321 ~~~g~~~~A~~~~~~al~-~~~~~~------------------------------------------------------- 344 (714)
..+|++++|+..|+ ++. .++...
T Consensus 104 ~~~g~~~~A~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (537)
T 3fp2_A 104 ESLGNFTDAMFDLS-VLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSS 182 (537)
T ss_dssp HHHTCHHHHHHHHH-HHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHT
T ss_pred HHcCCHHHHHHHHH-HHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHH
Confidence 99999999999885 332 111000
Q ss_pred ------------------------------------------------------HHHHHHHHHHHHHhHHHHHcCCHHHH
Q 005108 345 ------------------------------------------------------VHRLQVVEKHLSKCTDARKVGDWKSA 370 (714)
Q Consensus 345 ------------------------------------------------------~~~l~~~~~~~~~a~~~~~~g~~~~A 370 (714)
.........+..++..+...|++++|
T Consensus 183 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A 262 (537)
T 3fp2_A 183 VNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDA 262 (537)
T ss_dssp SCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHH
Confidence 00011123466677889999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcH
Q 005108 371 LREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRF 450 (714)
Q Consensus 371 l~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 450 (714)
+..|+++++.+|+ ...+..+|.++...|++++|+.+|+++++.+|.+ ..++..+|.++...|++
T Consensus 263 ~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~~~~ 326 (537)
T 3fp2_A 263 QVLLQESINLHPT--PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEY--------------PPTYYHRGQMYFILQDY 326 (537)
T ss_dssp HHHHHHHHHHCCC--HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTC--------------HHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHhcCCC--chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCC--------------HHHHHHHHHHHHhcCCH
Confidence 9999999999998 7778889999999999999999999999999998 78899999999999999
Q ss_pred HHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCH
Q 005108 451 ENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQW 530 (714)
Q Consensus 451 ~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 530 (714)
++|+..|+++++.+|++...+..+ |.++...|++++|+.+|+++++.+|++..++..+|.++...|++
T Consensus 327 ~~A~~~~~~a~~~~~~~~~~~~~l------------a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 394 (537)
T 3fp2_A 327 KNAKEDFQKAQSLNPENVYPYIQL------------ACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDF 394 (537)
T ss_dssp HHHHHHHHHHHHHCTTCSHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCH
Confidence 999999999999999999888766 99999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHh----------ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005108 531 ERSVEDSNQALLIQPNYT------KALLRRAASNSKL----------EKWADAVRDFEVLRRELPDDNEIAESLFHAQVS 594 (714)
Q Consensus 531 ~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~----------g~~~eA~~~~~~al~~~p~~~~~~~~L~~~~~~ 594 (714)
++|+..|++++++.|++. ..++.+|.++..+ |++++|+.+|+++++.+|++..++..+..++..
T Consensus 395 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 474 (537)
T 3fp2_A 395 DTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQ 474 (537)
T ss_dssp HHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 999999999999876654 3356778888888 999999999999999999999999999888877
Q ss_pred hhhhc
Q 005108 595 LKKSR 599 (714)
Q Consensus 595 l~~~~ 599 (714)
.++..
T Consensus 475 ~g~~~ 479 (537)
T 3fp2_A 475 MEKID 479 (537)
T ss_dssp TTCHH
T ss_pred hccHH
Confidence 76543
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-30 Score=295.15 Aligned_cols=324 Identities=12% Similarity=0.011 Sum_probs=262.5
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH------------------------------------
Q 005108 241 DAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAA------------------------------------ 284 (714)
Q Consensus 241 ~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~------------------------------------ 284 (714)
++..++.+|..|.+.|++++|+.+|+++++.+|++..++..++.
T Consensus 199 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 278 (597)
T 2xpi_A 199 EASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLK 278 (597)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHH
Confidence 48999999999999999999999999999999987666554432
Q ss_pred --HHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC--CCChHHHHHH------------
Q 005108 285 --ALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQ--QADPTEVHRL------------ 348 (714)
Q Consensus 285 --~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~--~~~~~~~~~l------------ 348 (714)
+|.+.|++++|++.|+++++. |.+..+|..++.+|.+.|++++|+..|++++. +.+...+..+
T Consensus 279 ~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 357 (597)
T 2xpi_A 279 LNKTSHEDELRRAEDYLSSINGL-EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNK 357 (597)
T ss_dssp SCTTTTHHHHHHHHHHHHTSTTG-GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHH
T ss_pred HHHHcCcchHHHHHHHHHHhhcC-CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHH
Confidence 222344555555555555544 44455555555555555555555555555543 1111110000
Q ss_pred -------------HHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHhhccccC
Q 005108 349 -------------QVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKI 415 (714)
Q Consensus 349 -------------~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 415 (714)
.....+..++..+.+.|++++|++.|+++++.+|. ....+..++.+|.+.|++++|++.|+++++.
T Consensus 358 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 436 (597)
T 2xpi_A 358 LYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQ-FGPAWIGFAHSFAIEGEHDQAISAYTTAARL 436 (597)
T ss_dssp HHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 01234566778889999999999999999998887 4566777999999999999999999999999
Q ss_pred CCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcC
Q 005108 416 EPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSER 495 (714)
Q Consensus 416 ~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~ 495 (714)
.|.+ ..+|..++.+|...|++++|+++|+++++..|++...+..+ |.++.+.|+
T Consensus 437 ~~~~--------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l------------~~~~~~~g~ 490 (597)
T 2xpi_A 437 FQGT--------------HLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNEL------------GVVAFNKSD 490 (597)
T ss_dssp TTTC--------------SHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHH------------HHHHHHTTC
T ss_pred Cccc--------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHH------------HHHHHHhCC
Confidence 8887 67889999999999999999999999999999998887766 999999999
Q ss_pred HHHHHHHHHHhhcc------CCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHH
Q 005108 496 FTEACQAYGEGLRF------DPSN-SVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAV 568 (714)
Q Consensus 496 ~~~A~~~~~~al~~------~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~ 568 (714)
+++|+++|+++++. +|++ ..+|..+|.+|.+.|++++|++.|+++++++|++..++..++.+|...|++++|+
T Consensus 491 ~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 570 (597)
T 2xpi_A 491 MQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAI 570 (597)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHH
Confidence 99999999999988 6665 7899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHH
Q 005108 569 RDFEVLRRELPDDNEIAESLFHAQ 592 (714)
Q Consensus 569 ~~~~~al~~~p~~~~~~~~L~~~~ 592 (714)
++|+++++++|++..++..|..++
T Consensus 571 ~~~~~~l~~~p~~~~~~~~l~~~~ 594 (597)
T 2xpi_A 571 THLHESLAISPNEIMASDLLKRAL 594 (597)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHTT
T ss_pred HHHHHHHhcCCCChHHHHHHHHHH
Confidence 999999999999999998887654
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-31 Score=293.69 Aligned_cols=222 Identities=13% Similarity=0.139 Sum_probs=192.9
Q ss_pred HHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhh
Q 005108 350 VVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFG 429 (714)
Q Consensus 350 ~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 429 (714)
....++.++..+...|++++|+..|+++++.+|. ...+..++.++...|++++|+..|+++++.+|.+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---------- 303 (514)
T 2gw1_A 236 LAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNN---------- 303 (514)
T ss_dssp HHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTC----------
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCC----------
Confidence 3456777888999999999999999999999998 8888889999999999999999999999999998
Q ss_pred hhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhcc
Q 005108 430 MLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRF 509 (714)
Q Consensus 430 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~ 509 (714)
..++..+|.++...|++++|+..|+++++.+|.+..++..+ |.++...|++++|+.+|+++++.
T Consensus 304 ----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l------------~~~~~~~~~~~~A~~~~~~~~~~ 367 (514)
T 2gw1_A 304 ----SSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQL------------ACLAYRENKFDDCETLFSEAKRK 367 (514)
T ss_dssp ----THHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHH------------HHHTTTTTCHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHH
Confidence 66889999999999999999999999999999998887766 88888888888888888888888
Q ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHH---hccHHHHHHHHHHHHHhCCC
Q 005108 510 DPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTK------ALLRRAASNSK---LEKWADAVRDFEVLRRELPD 580 (714)
Q Consensus 510 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~------~~~~la~~~~~---~g~~~eA~~~~~~al~~~p~ 580 (714)
.|.+..++..+|.++...|++++|+..|++++++.|++.. +++.+|.++.. .|++++|+.+|+++++++|+
T Consensus 368 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~ 447 (514)
T 2gw1_A 368 FPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPR 447 (514)
T ss_dssp STTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTT
T ss_pred cccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcc
Confidence 8888888888888888888888888888888888777644 78888888888 88888888888888888888
Q ss_pred CHHHHHHHHHHHHHhhhhc
Q 005108 581 DNEIAESLFHAQVSLKKSR 599 (714)
Q Consensus 581 ~~~~~~~L~~~~~~l~~~~ 599 (714)
+..++..+..++...++..
T Consensus 448 ~~~~~~~la~~~~~~g~~~ 466 (514)
T 2gw1_A 448 SEQAKIGLAQMKLQQEDID 466 (514)
T ss_dssp CHHHHHHHHHHHHHTTCHH
T ss_pred cHHHHHHHHHHHHHhcCHH
Confidence 8888888877776665443
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-30 Score=284.77 Aligned_cols=328 Identities=17% Similarity=0.113 Sum_probs=279.9
Q ss_pred CCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcH---HH
Q 005108 236 GICGGDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYW---RA 312 (714)
Q Consensus 236 ~~~p~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~a 312 (714)
...|+++..++.+|.+++..|++++|+.+|+++++.+|++..++..+|.+|..+|++++|+..|+++++++|++. .+
T Consensus 54 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 133 (450)
T 2y4t_A 54 DGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEA 133 (450)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHH
T ss_pred HhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHH
Confidence 457899999999999999999999999999999999999999999999999999999999999999999999988 77
Q ss_pred HHHH------------HHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHc
Q 005108 313 HQRL------------GSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAA 380 (714)
Q Consensus 313 ~~~l------------a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~ 380 (714)
+..+ |.++...|++++|+.+|++++...... ...+..++.++...|++++|+..|+++++.
T Consensus 134 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 206 (450)
T 2y4t_A 134 QSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWD-------AELRELRAECFIKEGEPRKAISDLKAASKL 206 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCGGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------hHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 6665 666999999999999999998622211 234667788899999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHH
Q 005108 381 GADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKA 460 (714)
Q Consensus 381 ~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 460 (714)
+|.. ...+..+|.+|...|++++|+..|+++++.+|++.. .......+.....+..+|.++...|++++|+.+|+++
T Consensus 207 ~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~ 283 (450)
T 2y4t_A 207 KNDN-TEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKR--CFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESV 283 (450)
T ss_dssp HCSC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH--HHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHH--HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9874 677788999999999999999999999999998711 0001111112222344599999999999999999999
Q ss_pred hccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 005108 461 GQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQA 540 (714)
Q Consensus 461 l~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 540 (714)
+++.|++...+... +..+|.++.+.|++++|+.+|+++++++|++..+|..+|.+|..+|++++|+..|+++
T Consensus 284 l~~~p~~~~~~~~~--------~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 355 (450)
T 2y4t_A 284 MKTEPSIAEYTVRS--------KERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETA 355 (450)
T ss_dssp HHHCCSSHHHHHHH--------HHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhcCCcchHHHHHH--------HHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 99999986633211 2245999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCHHHHHHHHHH------------HHHhc-----cHHHHHHHHHH-HHHhCCCC
Q 005108 541 LLIQPNYTKALLRRAAS------------NSKLE-----KWADAVRDFEV-LRRELPDD 581 (714)
Q Consensus 541 l~~~p~~~~~~~~la~~------------~~~~g-----~~~eA~~~~~~-al~~~p~~ 581 (714)
++++|++..++..++.+ |..+| +.+++.+.|++ +++.+|++
T Consensus 356 l~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~ 414 (450)
T 2y4t_A 356 QEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDN 414 (450)
T ss_dssp HTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGG
T ss_pred HHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCC
Confidence 99999999999999955 44444 56778888986 88888864
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.98 E-value=1.2e-30 Score=272.26 Aligned_cols=289 Identities=15% Similarity=0.098 Sum_probs=262.1
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 005108 238 CGGDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLG 317 (714)
Q Consensus 238 ~p~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la 317 (714)
.++++..+..+|..++..|++++|+.+|+++++.+|.+..++..++.++..+|++++|+..++++++.+|++..++..+|
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 97 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVG 97 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHH
Confidence 45677788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcC-CHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 005108 318 SLLVRLG-QVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEAL 396 (714)
Q Consensus 318 ~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~ 396 (714)
.++...| ++++|+.+|+++ ++.+|.. ...+..+|.++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a-----------------------------------------~~~~~~~-~~~~~~l~~~~ 135 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKA-----------------------------------------TTLEKTY-GPAWIAYGHSF 135 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHH-----------------------------------------HTTCTTC-THHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHHHHHHH-----------------------------------------HHhCCcc-HHHHHHHHHHH
Confidence 9999988 888887777554 4445543 34466689999
Q ss_pred HHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHh
Q 005108 397 LKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNN 476 (714)
Q Consensus 397 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 476 (714)
...|++++|+..|+++++..|.+ ...+..+|.++...|++++|+.+|+++++.+|++..++..+
T Consensus 136 ~~~~~~~~A~~~~~~a~~~~~~~--------------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l-- 199 (330)
T 3hym_B 136 AVESEHDQAMAAYFTAAQLMKGC--------------HLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEV-- 199 (330)
T ss_dssp HHHTCHHHHHHHHHHHHHHTTTC--------------SHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHH--
T ss_pred HHccCHHHHHHHHHHHHHhcccc--------------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHH--
Confidence 99999999999999999999987 56788899999999999999999999999999998888766
Q ss_pred HHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccC---------CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC
Q 005108 477 VKLVARARARGNDLFKSERFTEACQAYGEGLRFD---------PSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNY 547 (714)
Q Consensus 477 l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~---------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 547 (714)
|.++...|++++|+.+|+++++.. |....++..+|.+|..+|++++|+.+|+++++++|++
T Consensus 200 ----------~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 269 (330)
T 3hym_B 200 ----------GVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQN 269 (330)
T ss_dssp ----------HHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred ----------HHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccc
Confidence 999999999999999999999875 6678999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005108 548 TKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAESLFHAQVS 594 (714)
Q Consensus 548 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~L~~~~~~ 594 (714)
..++..+|.++..+|++++|+++|+++++++|++..++..+..+...
T Consensus 270 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 316 (330)
T 3hym_B 270 ASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEM 316 (330)
T ss_dssp SHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999887643
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.97 E-value=9.2e-30 Score=284.82 Aligned_cols=328 Identities=13% Similarity=0.113 Sum_probs=286.6
Q ss_pred cchhhhhcCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH--------
Q 005108 228 ANVNRNRGGICGGDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKEC-------- 299 (714)
Q Consensus 228 ~~~~~~~~~~~p~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~-------- 299 (714)
...+......+|+++..++.+|.+++..|++++|+..|+++++.+|++..+++.+|.++..+|++++|+..|
T Consensus 45 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~ 124 (537)
T 3fp2_A 45 IKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVLSLNGD 124 (537)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHC----
T ss_pred HHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCC
Confidence 334444445789999999999999999999999999999999999999999999999999999988887755
Q ss_pred --------------------------------------------------------------------------------
Q 005108 300 -------------------------------------------------------------------------------- 299 (714)
Q Consensus 300 -------------------------------------------------------------------------------- 299 (714)
T Consensus 125 ~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 204 (537)
T 3fp2_A 125 FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLY 204 (537)
T ss_dssp -------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHH
Confidence
Q ss_pred ---------------------HHHHhcCCCcHH-------HHHHHHHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHH
Q 005108 300 ---------------------EEAVRLDPNYWR-------AHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVV 351 (714)
Q Consensus 300 ---------------------~~al~~~p~~~~-------a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~ 351 (714)
+++++.+|++.. ++..+|.++...|++++|+..|++++...+..
T Consensus 205 ~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~-------- 276 (537)
T 3fp2_A 205 SATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTP-------- 276 (537)
T ss_dssp TCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH--------
T ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCc--------
Confidence 333445566533 57788899999999999999999998732221
Q ss_pred HHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhh
Q 005108 352 EKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGML 431 (714)
Q Consensus 352 ~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 431 (714)
..+..++.++...|++++|+..|+++++.+|+ ....+..+|.++...|++++|+..|+++++.+|.+
T Consensus 277 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~------------ 343 (537)
T 3fp2_A 277 NSYIFLALTLADKENSQEFFKFFQKAVDLNPE-YPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPEN------------ 343 (537)
T ss_dssp HHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------------
T ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------------
Confidence 34666788899999999999999999999997 46677889999999999999999999999999998
Q ss_pred hhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCC
Q 005108 432 SEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDP 511 (714)
Q Consensus 432 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p 511 (714)
..++..+|.++...|++++|+.+|+++++.+|++..++..+ |.++...|++++|+.+|+++++..|
T Consensus 344 --~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l------------~~~~~~~g~~~~A~~~~~~a~~~~~ 409 (537)
T 3fp2_A 344 --VYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFF------------AEILTDRGDFDTAIKQYDIAKRLEE 409 (537)
T ss_dssp --SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHH------------HHHHHHhCCHHHHHHHHHHHHHcCC
Confidence 67899999999999999999999999999999999988876 9999999999999999999999877
Q ss_pred CCH------HHHHHHHHHHHHh----------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 005108 512 SNS------VLYCNRAACWFKL----------GQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLR 575 (714)
Q Consensus 512 ~~~------~~~~~la~~~~~~----------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al 575 (714)
++. ..++.+|.++... |++++|+..|+++++.+|++..+++.+|.+|..+|++++|+++|++++
T Consensus 410 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 489 (537)
T 3fp2_A 410 VQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSA 489 (537)
T ss_dssp HCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 653 3466778999999 999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCHHHHHHHHH
Q 005108 576 RELPDDNEIAESLFH 590 (714)
Q Consensus 576 ~~~p~~~~~~~~L~~ 590 (714)
+++|++.+....+..
T Consensus 490 ~~~~~~~~~~~~~~~ 504 (537)
T 3fp2_A 490 ILARTMDEKLQATTF 504 (537)
T ss_dssp HHC--CHHHHHHHHH
T ss_pred HhCCCcHHHHHHHhH
Confidence 999999988765543
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.6e-30 Score=286.23 Aligned_cols=326 Identities=16% Similarity=0.137 Sum_probs=290.2
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 005108 241 DAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLL 320 (714)
Q Consensus 241 ~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 320 (714)
.++.++.+|..++..|+|++|+.+|+++++.+| ++.++..+|.++..+|++++|+..|+++++++|++..+++.+|.++
T Consensus 5 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 5 YALALKDKGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHH
Confidence 568899999999999999999999999999999 6999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHhhcCCCChHHHHHH----------------------------------------------------
Q 005108 321 VRLGQVENARRHLCLSGQQADPTEVHRL---------------------------------------------------- 348 (714)
Q Consensus 321 ~~~g~~~~A~~~~~~al~~~~~~~~~~l---------------------------------------------------- 348 (714)
..+|++++|+..|++++...+.......
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS 163 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred HHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence 9999999999999998763321110000
Q ss_pred --------------------HHHHHHHHHhHHHHH---cCCHHHHHHHHHHHHH-----c--CCCC------CHHHHHHH
Q 005108 349 --------------------QVVEKHLSKCTDARK---VGDWKSALREGDAAIA-----A--GADF------SPQLSMCR 392 (714)
Q Consensus 349 --------------------~~~~~~~~~a~~~~~---~g~~~~Al~~~~~al~-----~--~p~~------~~~~~~~l 392 (714)
.....++..+..+.. .|++++|+..|+++++ . +|+. ....+..+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (514)
T 2gw1_A 164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT 243 (514)
T ss_dssp HHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHH
Confidence 003344555555554 8999999999999999 5 4433 24667789
Q ss_pred HHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHH
Q 005108 393 VEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAV 472 (714)
Q Consensus 393 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 472 (714)
|.++...|++++|+.+|+++++.+|. ..++..+|.++...|++++|+..|++++..+|.+..++.
T Consensus 244 ~~~~~~~~~~~~A~~~~~~~l~~~~~---------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 308 (514)
T 2gw1_A 244 GIFKFLKNDPLGAHEDIKKAIELFPR---------------VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYY 308 (514)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHCCC---------------HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcc---------------HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHH
Confidence 99999999999999999999998876 357899999999999999999999999999999998887
Q ss_pred HHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHH
Q 005108 473 LLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALL 552 (714)
Q Consensus 473 ~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 552 (714)
.+ |.++...|++++|+.+|+++++.+|.+..++..+|.++...|++++|+..|+++++..|++..+++
T Consensus 309 ~l------------~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 376 (514)
T 2gw1_A 309 HR------------GQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPN 376 (514)
T ss_dssp HH------------HHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHH
T ss_pred HH------------HHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHH
Confidence 66 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHH
Q 005108 553 RRAASNSKLEKWADAVRDFEVLRRELPDDNE------IAESLFHAQVS 594 (714)
Q Consensus 553 ~la~~~~~~g~~~eA~~~~~~al~~~p~~~~------~~~~L~~~~~~ 594 (714)
.+|.++...|++++|+.+|+++++..|++.. ++..+..++..
T Consensus 377 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~ 424 (514)
T 2gw1_A 377 FFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTR 424 (514)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999998865 77777777665
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-29 Score=286.09 Aligned_cols=327 Identities=12% Similarity=0.066 Sum_probs=247.1
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----------------CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 005108 238 CGGDAEELKRMGNELYRKGCFGEALSMYDKAISLA----------------PRNAAFRSNRAAALTGLGRIGEAVKECEE 301 (714)
Q Consensus 238 ~p~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~----------------p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 301 (714)
.+.++..++.++..|.+.|++++|+..|+++.... +.+..+|+.+|.+|.+.|++++|++.|++
T Consensus 146 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 225 (597)
T 2xpi_A 146 YNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKE 225 (597)
T ss_dssp GGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 46778888888888888888888888888632222 22378888889999999999999999999
Q ss_pred HHhcCCCcHHHHHHHHH--------------------------------------HHHHcCCHHHHHHHHHhhcCC-CCh
Q 005108 302 AVRLDPNYWRAHQRLGS--------------------------------------LLVRLGQVENARRHLCLSGQQ-ADP 342 (714)
Q Consensus 302 al~~~p~~~~a~~~la~--------------------------------------~~~~~g~~~~A~~~~~~al~~-~~~ 342 (714)
+++.+|++..++..++. .|.+.|++++|+..|++++.. .+.
T Consensus 226 ~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~ 305 (597)
T 2xpi_A 226 ALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSS 305 (597)
T ss_dssp HHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCH
T ss_pred HHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchH
Confidence 98888888887776644 334568888888888888763 222
Q ss_pred HHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCC---------------------------------CHHHH
Q 005108 343 TEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADF---------------------------------SPQLS 389 (714)
Q Consensus 343 ~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~---------------------------------~~~~~ 389 (714)
..+.. ++..+.+.|++++|+..|+++++.+|+. ....+
T Consensus 306 ~~~~~---------l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 376 (597)
T 2xpi_A 306 DLLLC---------KADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTW 376 (597)
T ss_dssp HHHHH---------HHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHH
T ss_pred HHHHH---------HHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHH
Confidence 22221 2233444555555555555555444432 34455
Q ss_pred HHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHH
Q 005108 390 MCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVE 469 (714)
Q Consensus 390 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 469 (714)
..++.+|.+.|++++|+++|+++++.+|.+ ..+|..++.+|...|++++|++.|+++++..|++..
T Consensus 377 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 442 (597)
T 2xpi_A 377 LAVGIYYLCVNKISEARRYFSKSSTMDPQF--------------GPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHL 442 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCCC--------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchH
Confidence 556677777777777777777777666666 566777777777777777777777777777777766
Q ss_pred HHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh------
Q 005108 470 VAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLI------ 543 (714)
Q Consensus 470 ~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------ 543 (714)
.+..+ |.+|.+.|++++|+++|+++++..|.++.+|..+|.+|.+.|++++|++.|++++++
T Consensus 443 ~~~~l------------~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 510 (597)
T 2xpi_A 443 PYLFL------------GMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQS 510 (597)
T ss_dssp HHHHH------------HHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHH------------HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhcccc
Confidence 66654 888999999999999999999999999999999999999999999999999999887
Q ss_pred CCCC-HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhc
Q 005108 544 QPNY-TKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAESLFHAQVSLKKSR 599 (714)
Q Consensus 544 ~p~~-~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~L~~~~~~l~~~~ 599 (714)
+|++ ..++..++.+|.+.|++++|++.|+++++++|++..++..+..++...++.+
T Consensus 511 ~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 567 (597)
T 2xpi_A 511 NEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPG 567 (597)
T ss_dssp CSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHH
T ss_pred chhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHH
Confidence 6664 7889999999999999999999999999999999999998888887776654
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-28 Score=259.93 Aligned_cols=314 Identities=17% Similarity=0.089 Sum_probs=272.9
Q ss_pred hhcCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC---Cc
Q 005108 233 NRGGICGGDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDP---NY 309 (714)
Q Consensus 233 ~~~~~~p~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---~~ 309 (714)
......|+++..++.+|.+++..|++++|+..|+++++.+|++..++..+|.++...|++++|+..|+++++.+| ++
T Consensus 28 ~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 107 (359)
T 3ieg_A 28 AAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEE 107 (359)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHH
T ss_pred HHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccCh
Confidence 333468899999999999999999999999999999999999999999999999999999999999999999999 88
Q ss_pred HHHHHHH------------HHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHH
Q 005108 310 WRAHQRL------------GSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAA 377 (714)
Q Consensus 310 ~~a~~~l------------a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~a 377 (714)
..++..+ |.++...|++++|+..|++++...+.. ...+..++.++...|++++|+..++++
T Consensus 108 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~A~~~~~~~ 180 (359)
T 3ieg_A 108 KEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWD-------AELRELRAECFIKEGEPRKAISDLKAA 180 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc-------hHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 8888877 799999999999999999998722211 245677888899999999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHH
Q 005108 378 IAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAA 457 (714)
Q Consensus 378 l~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 457 (714)
++..|.. ...+..+|.++...|++++|+..|+++++.+|.+.. ...+...+........+|.++...|++++|+..|
T Consensus 181 ~~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~ 257 (359)
T 3ieg_A 181 SKLKSDN-TEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKR--CFAHYKQVKKLNKLIESAEELIRDGRYTDATSKY 257 (359)
T ss_dssp HTTCSCC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH--HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchH--HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999874 567778999999999999999999999999998721 1111111222233456699999999999999999
Q ss_pred HHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Q 005108 458 EKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDS 537 (714)
Q Consensus 458 ~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 537 (714)
+++++..|++...+... +..+|.++...|++++|+.+|+++++.+|+++.+++.+|.++...|++++|+..|
T Consensus 258 ~~~~~~~~~~~~~~~~~--------~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 329 (359)
T 3ieg_A 258 ESVMKTEPSVAEYTVRS--------KERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDY 329 (359)
T ss_dssp HHHHHHCCSSHHHHHHH--------HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHhcCCCchHHHHHH--------HHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999987654321 2245999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHhccH
Q 005108 538 NQALLIQPNYTKALLRRAASNSKLEKW 564 (714)
Q Consensus 538 ~~al~~~p~~~~~~~~la~~~~~~g~~ 564 (714)
+++++++|++..++..++.++..+++.
T Consensus 330 ~~a~~~~p~~~~~~~~l~~~~~~~~~~ 356 (359)
T 3ieg_A 330 EAAQEHNENDQQIREGLEKAQRLLKQS 356 (359)
T ss_dssp HHHHTTCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCChHHHHHHHHHHHHHHHh
Confidence 999999999999999999988776543
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.8e-29 Score=267.94 Aligned_cols=293 Identities=16% Similarity=0.062 Sum_probs=224.4
Q ss_pred HHHHcCCHHHHHH-HHHHHHHhCCCCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Q 005108 251 ELYRKGCFGEALS-MYDKAISLAPRNA----AFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVRLGQ 325 (714)
Q Consensus 251 ~~~~~g~~~~Al~-~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~ 325 (714)
++...|+|++|+. .|++++...|+++ ..++.+|.++...|++++|+..|+++++.+|++..++..+|.++...|+
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcC
Confidence 4555677777877 7777777776653 4577778888888888888888888888777777777888888888888
Q ss_pred HHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH---------------
Q 005108 326 VENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSM--------------- 390 (714)
Q Consensus 326 ~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~--------------- 390 (714)
+++|+.+|++++...+.. ...+..++.++...|++++|+..+++++...|........
T Consensus 114 ~~~A~~~~~~al~~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (368)
T 1fch_A 114 ELLAISALRRCLELKPDN-------QTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKR 186 (368)
T ss_dssp HHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------C
T ss_pred HHHHHHHHHHHHhcCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHH
Confidence 888877777776522111 1345556666777777777777777777777754332221
Q ss_pred HHHHHHHHcCCHHHHHHHhhccccCCCC--CCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCH
Q 005108 391 CRVEALLKLHQLEDAESSLSNIPKIEPS--TVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNV 468 (714)
Q Consensus 391 ~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 468 (714)
.++.++ ..|++++|+.+|+++++.+|. + ..++..+|.++...|++++|+.+|++++.++|++.
T Consensus 187 ~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~--------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 251 (368)
T 1fch_A 187 ILGSLL-SDSLFLEVKELFLAAVRLDPTSID--------------PDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDY 251 (368)
T ss_dssp TTHHHH-HHHHHHHHHHHHHHHHHHSTTSCC--------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHh-hcccHHHHHHHHHHHHHhCcCccc--------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCH
Confidence 255555 889999999999999999888 5 77888999999999999999999999999999988
Q ss_pred HHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC-
Q 005108 469 EVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNY- 547 (714)
Q Consensus 469 ~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~- 547 (714)
.++..+ |.++...|++++|+.+|+++++++|++..+++.+|.+|.++|++++|+..|++++++.|++
T Consensus 252 ~~~~~l------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 319 (368)
T 1fch_A 252 LLWNKL------------GATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSR 319 (368)
T ss_dssp HHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHH------------HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCC
Confidence 887765 8889999999999999999999999999999999999999999999999999999988887
Q ss_pred ----------HHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Q 005108 548 ----------TKALLRRAASNSKLEKWADAVRDFEVLRRE 577 (714)
Q Consensus 548 ----------~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 577 (714)
..+|..+|.+|..+|++++|...++++++.
T Consensus 320 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 359 (368)
T 1fch_A 320 GPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLST 359 (368)
T ss_dssp -----CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHH
T ss_pred CccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHHH
Confidence 788999999999999999999888877654
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-28 Score=262.15 Aligned_cols=278 Identities=17% Similarity=0.074 Sum_probs=234.4
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 005108 240 GDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSL 319 (714)
Q Consensus 240 ~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~ 319 (714)
.++..++.+|..++..|++++|+.+|+++++.+|++..++..+|.+|..+|++++|+..|+++++++|++..++..+|.+
T Consensus 63 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 63 KDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp TTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 34566999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 005108 320 LVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKL 399 (714)
Q Consensus 320 ~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~ 399 (714)
|..+|++++|+.+|++++...+..... +..+ + ....++..++.++...
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~p~~~~~-------~~~~-------~------------------~~~~~~~~l~~~~~~~ 190 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQNPKYKYL-------VKNK-------K------------------GSPGLTRRMSKSPVDS 190 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCHHHHCC---------------------------------------------------CC
T ss_pred HHccccHHHHHHHHHHHHHhCccchHH-------Hhhh-------c------------------cchHHHHHHHHHHhhh
Confidence 999999999999998876411110000 0000 0 0123344578899999
Q ss_pred CCHHHHHHHhhccccCCCC--CCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhH
Q 005108 400 HQLEDAESSLSNIPKIEPS--TVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNV 477 (714)
Q Consensus 400 g~~~~A~~~~~~al~~~p~--~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l 477 (714)
|++++|+.+|+++++.+|. + ..++..+|.++...|++++|+.+|+++++++|++..++..+
T Consensus 191 g~~~~A~~~~~~al~~~p~~~~--------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l--- 253 (365)
T 4eqf_A 191 SVLEGVKELYLEAAHQNGDMID--------------PDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRL--- 253 (365)
T ss_dssp HHHHHHHHHHHHHHHHSCSSCC--------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH---
T ss_pred hhHHHHHHHHHHHHHhCcCccC--------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH---
Confidence 9999999999999999998 5 77899999999999999999999999999999999888766
Q ss_pred HHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-----------
Q 005108 478 KLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPN----------- 546 (714)
Q Consensus 478 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----------- 546 (714)
|.++...|++++|+.+|+++++++|++..+++++|.+|..+|++++|+.+|++++++.|+
T Consensus 254 ---------~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 324 (365)
T 4eqf_A 254 ---------GATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPA 324 (365)
T ss_dssp ---------HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC----------
T ss_pred ---------HHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhh
Confidence 999999999999999999999999999999999999999999999999999999999877
Q ss_pred -CHHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 005108 547 -YTKALLRRAASNSKLEKWADAVRDFEVLR 575 (714)
Q Consensus 547 -~~~~~~~la~~~~~~g~~~eA~~~~~~al 575 (714)
+..+|..++.++..+|+.+.|....++.+
T Consensus 325 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l 354 (365)
T 4eqf_A 325 ISGNIWAALRIALSLMDQPELFQAANLGDL 354 (365)
T ss_dssp --CHHHHHHHHHHHHHTCHHHHHHHHTTCC
T ss_pred hHHHHHHHHHHHHHHcCcHHHHHHHHHhhH
Confidence 35788999999999999999888776543
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.96 E-value=4.5e-28 Score=252.25 Aligned_cols=284 Identities=14% Similarity=0.107 Sum_probs=245.1
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 005108 241 DAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLL 320 (714)
Q Consensus 241 ~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 320 (714)
++..++.+|..++..|++++|+.+|+++++.+|++..++..+|.++...|++++|+..|+++++.+|++..++..+|.++
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSH 99 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHH
Confidence 44667889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH-HH-HHHH
Q 005108 321 VRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCR-VE-ALLK 398 (714)
Q Consensus 321 ~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~l-a~-~~~~ 398 (714)
...|++++|+..|++++............. ....+.. .. ...+ +. ++..
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~-~~-~~~~~~~~~~~~ 150 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQPQYEQLGSVN---------------------------LQADVDI-DD-LNVQSEDFFFAA 150 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTTTTTC-------------------------------------------------CCTTS
T ss_pred HHcCCHHHHHHHHHHHHHhCCccHHHHHHH---------------------------hHHHHHH-HH-HHHHHHhHHHHH
Confidence 999999999999988765221111000000 0000000 00 1123 33 5888
Q ss_pred cCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHH
Q 005108 399 LHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVK 478 (714)
Q Consensus 399 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~ 478 (714)
.|++++|+.+++++++.+|.+ ..++..+|.++...|++++|+.+++++++.+|++..++..+
T Consensus 151 ~~~~~~A~~~~~~~~~~~~~~--------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l---- 212 (327)
T 3cv0_A 151 PNEYRECRTLLHAALEMNPND--------------AQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKL---- 212 (327)
T ss_dssp HHHHHHHHHHHHHHHHHSTTC--------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH----
T ss_pred cccHHHHHHHHHHHHhhCCCC--------------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHH----
Confidence 899999999999999999988 78999999999999999999999999999999999888766
Q ss_pred HHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC------------
Q 005108 479 LVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPN------------ 546 (714)
Q Consensus 479 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------------ 546 (714)
|.++...|++++|+.+|+++++..|++..++..+|.+|..+|++++|++.|++++++.|+
T Consensus 213 --------~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 284 (327)
T 3cv0_A 213 --------GATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREA 284 (327)
T ss_dssp --------HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTH
T ss_pred --------HHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhc
Confidence 999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Q 005108 547 YTKALLRRAASNSKLEKWADAVRDFEVLRRELP 579 (714)
Q Consensus 547 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p 579 (714)
+..++..++.++..+|++++|...++++++..|
T Consensus 285 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~ 317 (327)
T 3cv0_A 285 TRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFA 317 (327)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHH
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcc
Confidence 789999999999999999999999998877654
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-27 Score=253.69 Aligned_cols=256 Identities=11% Similarity=0.025 Sum_probs=213.9
Q ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHhcCCCcHHHHHH
Q 005108 237 ICGGDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGR-IGEAVKECEEAVRLDPNYWRAHQR 315 (714)
Q Consensus 237 ~~p~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~a~~~ 315 (714)
+.|+++.++..+|.++...|++++|+.+|+++++++|++..+|+.+|.++..+|+ +++|+..|+++++++|++..+|+.
T Consensus 92 ~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~ 171 (382)
T 2h6f_A 92 YSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHH 171 (382)
T ss_dssp CCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 5777888899999999999999999999999999999999999999999999997 999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 005108 316 LGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEA 395 (714)
Q Consensus 316 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~ 395 (714)
+|.++..+|++++|+..| +++++++|++ ...|..+|.+
T Consensus 172 ~g~~~~~~g~~~eAl~~~-----------------------------------------~kal~ldP~~-~~a~~~lg~~ 209 (382)
T 2h6f_A 172 RRVLVEWLRDPSQELEFI-----------------------------------------ADILNQDAKN-YHAWQHRQWV 209 (382)
T ss_dssp HHHHHHHHTCCTTHHHHH-----------------------------------------HHHHHHCTTC-HHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHH-----------------------------------------HHHHHhCccC-HHHHHHHHHH
Confidence 999998888777776655 5666778874 5667779999
Q ss_pred HHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHH-hCcHHHH-----HHHHHHHhccCCCCHH
Q 005108 396 LLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMA-LGRFENA-----VTAAEKAGQIDPRNVE 469 (714)
Q Consensus 396 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A-----~~~~~~al~~~p~~~~ 469 (714)
+..+|++++|+.+|+++++++|.+ ..+|+.+|.++.. .|.+++| +.+|++++.++|++..
T Consensus 210 ~~~~g~~~eAl~~~~~al~l~P~~--------------~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~ 275 (382)
T 2h6f_A 210 IQEFKLWDNELQYVDQLLKEDVRN--------------NSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNES 275 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTTC--------------HHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHH
T ss_pred HHHcCChHHHHHHHHHHHHhCCCC--------------HHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHH
Confidence 999999999999999999999998 8899999999999 5554777 4778888888888887
Q ss_pred HHHHHHhHHHHHHHHHHHhHHhhCc--CHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhC---------CHHHHHHHHH
Q 005108 470 VAVLLNNVKLVARARARGNDLFKSE--RFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLG---------QWERSVEDSN 538 (714)
Q Consensus 470 ~~~~l~~l~~~~~~~~~g~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---------~~~~A~~~~~ 538 (714)
+|..+ |.++...| ++++|++.++++ +.+|++..++..+|.+|.++| .+++|+++|+
T Consensus 276 a~~~l------------~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~ 342 (382)
T 2h6f_A 276 AWNYL------------KGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCE 342 (382)
T ss_dssp HHHHH------------HHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred HHHHH------------HHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHH
Confidence 77765 66677766 577777777776 777777777777777777764 2477777777
Q ss_pred HH-HHhCCCCHHHHHHHHHHHHHh
Q 005108 539 QA-LLIQPNYTKALLRRAASNSKL 561 (714)
Q Consensus 539 ~a-l~~~p~~~~~~~~la~~~~~~ 561 (714)
++ ++++|.....|..++..+..+
T Consensus 343 ~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 343 ILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHhCchhHHHHHHHHHHHHHH
Confidence 77 777777777777777666543
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.8e-27 Score=261.86 Aligned_cols=321 Identities=12% Similarity=-0.001 Sum_probs=242.4
Q ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHhcC
Q 005108 237 ICGGDAEELKRMGNELYRKGCFGEALSMYDKAISLA--------PRNAAFRSNRAAALTGL--GRIGEAVKECEEAVRLD 306 (714)
Q Consensus 237 ~~p~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~--------p~~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~ 306 (714)
..|..+..+.++|.+|+..|++++|+.+|++++++. +..+.++..+|.++... ++|++|+.+|+++++++
T Consensus 89 ~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~ 168 (472)
T 4g1t_A 89 AEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK 168 (472)
T ss_dssp CTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS
T ss_pred cchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC
Confidence 467788899999999999999999999999999873 35578899998887765 47999999999999999
Q ss_pred CCcHHHHHHHHHHHHH---cCCHHHHHHHHHhhcC--CCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcC
Q 005108 307 PNYWRAHQRLGSLLVR---LGQVENARRHLCLSGQ--QADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAG 381 (714)
Q Consensus 307 p~~~~a~~~la~~~~~---~g~~~~A~~~~~~al~--~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~ 381 (714)
|+++.++..++.++.. .+++++|+..|++++. +.+......+ ....+..+...+++++|+..+++++..+
T Consensus 169 p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l-----~~~~~~~~~~~~~~~~a~~~~~~al~~~ 243 (472)
T 4g1t_A 169 PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLL-----ALKLHKMREEGEEEGEGEKLVEEALEKA 243 (472)
T ss_dssp TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHH-----HHHHHHCC------CHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHH-----HHHHHHHHhhhhHHHHHHHHHHHHHHhC
Confidence 9999999999988654 5777899999999987 2222221111 1122333456788999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHh--------------
Q 005108 382 ADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMAL-------------- 447 (714)
Q Consensus 382 p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-------------- 447 (714)
|.. ...+..+|.+|...|++++|+..|+++++.+|++ ..++..+|.+|...
T Consensus 244 ~~~-~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~--------------~~~~~~lg~~y~~~~~~~~~~~~~~~~~ 308 (472)
T 4g1t_A 244 PGV-TDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNN--------------AYLHCQIGCCYRAKVFQVMNLRENGMYG 308 (472)
T ss_dssp SSC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC--------------HHHHHHHHHHHHHHHHHHHHC------C
T ss_pred ccH-HHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCh--------------HHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 984 5667779999999999999999999999999998 77888888877543
Q ss_pred -----CcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCH---HHHHH
Q 005108 448 -----GRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNS---VLYCN 519 (714)
Q Consensus 448 -----g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~ 519 (714)
+.+++|+..|+++++++|.+...+..+ |.++...|++++|+.+|++++++++++. .+++.
T Consensus 309 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l------------g~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~ 376 (472)
T 4g1t_A 309 KRKLLELIGHAVAHLKKADEANDNLFRVCSIL------------ASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLR 376 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHH------------HHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHhhcCCchhhhhhhH------------HHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 457899999999999999998888766 9999999999999999999999988764 34666
Q ss_pred HHHH-HHHhCCHHHHHHHHHHHHHhC------------------------CCCHHHHHHHHHHHHHhccHHHHHHHHHHH
Q 005108 520 RAAC-WFKLGQWERSVEDSNQALLIQ------------------------PNYTKALLRRAASNSKLEKWADAVRDFEVL 574 (714)
Q Consensus 520 la~~-~~~~g~~~~A~~~~~~al~~~------------------------p~~~~~~~~la~~~~~~g~~~eA~~~~~~a 574 (714)
+|.+ +...|++++|+..|+++++++ |+++.++..+|.+|..+|++++|+++|+++
T Consensus 377 ~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kA 456 (472)
T 4g1t_A 377 YGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERG 456 (472)
T ss_dssp HHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC---------
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7754 457899999999999988764 556678899999999999999999999999
Q ss_pred HHhCCCCHHHHHHHH
Q 005108 575 RRELPDDNEIAESLF 589 (714)
Q Consensus 575 l~~~p~~~~~~~~L~ 589 (714)
+++.|.++.+...++
T Consensus 457 Le~~~~~p~a~~~~G 471 (472)
T 4g1t_A 457 LESGSLIPSASSWNG 471 (472)
T ss_dssp ---------------
T ss_pred HhcCCCCCcHhhcCC
Confidence 999998888766554
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.3e-26 Score=253.05 Aligned_cols=331 Identities=13% Similarity=-0.015 Sum_probs=262.3
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-----
Q 005108 241 DAEELKRMGNELYRKGCFGEALSMYDKAISL---------APRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLD----- 306 (714)
Q Consensus 241 ~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~---------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----- 306 (714)
.+..+..+|.+++.+|++++|+++|++|+++ +|....+|.++|.+|..+|++++|+.+|++++++.
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 4677889999999999999999999999986 67778899999999999999999999999998863
Q ss_pred ---CCcHHHHHHHHHHHHHc--CCHHHHHHHHHhhcC--CCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHH
Q 005108 307 ---PNYWRAHQRLGSLLVRL--GQVENARRHLCLSGQ--QADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIA 379 (714)
Q Consensus 307 ---p~~~~a~~~la~~~~~~--g~~~~A~~~~~~al~--~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~ 379 (714)
+....++..+|.++... +++++|+.+|++++. +.++.....+..+ ...+...+++++|++.|+++++
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~------~~~l~~~~~~~~al~~~~~al~ 203 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIA------SYRLDNWPPSQNAIDPLRQAIR 203 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHH------HHHHHHSCCCCCTHHHHHHHHH
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHH------HHHhcCchHHHHHHHHHHHHhh
Confidence 34578888888887765 479999999999987 3333222211111 1124456888999999999999
Q ss_pred cCCCCCHHHHHHHHHHHH----HcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHH
Q 005108 380 AGADFSPQLSMCRVEALL----KLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVT 455 (714)
Q Consensus 380 ~~p~~~~~~~~~la~~~~----~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 455 (714)
++|+. ..++..++..+. ..+++++|+.+|++++..+|.. ..++..+|.+|...|++++|+.
T Consensus 204 l~p~~-~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~--------------~~~~~~lg~~~~~~~~~~~A~~ 268 (472)
T 4g1t_A 204 LNPDN-QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGV--------------TDVLRSAAKFYRRKDEPDKAIE 268 (472)
T ss_dssp HCSSC-HHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSC--------------HHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCcc-hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccH--------------HHHHHHHHHHHHHcCchHHHHH
Confidence 99985 455555665554 4568899999999999999998 8899999999999999999999
Q ss_pred HHHHHhccCCCCHHHHHHHHhHHHHHHHH-------HHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhC
Q 005108 456 AAEKAGQIDPRNVEVAVLLNNVKLVARAR-------ARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLG 528 (714)
Q Consensus 456 ~~~~al~~~p~~~~~~~~l~~l~~~~~~~-------~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 528 (714)
.|+++++.+|++..++..+..+....... ..+......+.+++|+..|+++++++|.+..++..+|.+|..+|
T Consensus 269 ~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~ 348 (472)
T 4g1t_A 269 LLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALAD 348 (472)
T ss_dssp HHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTT
T ss_pred HHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhc
Confidence 99999999999999888764332211111 11222233456789999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCHH---HHHHHHHH-HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005108 529 QWERSVEDSNQALLIQPNYTK---ALLRRAAS-NSKLEKWADAVRDFEVLRRELPDDNEIAESLFHAQ 592 (714)
Q Consensus 529 ~~~~A~~~~~~al~~~p~~~~---~~~~la~~-~~~~g~~~eA~~~~~~al~~~p~~~~~~~~L~~~~ 592 (714)
++++|+++|+++++++|++.. +++.+|.+ +..+|++++|+.+|+++++++|++.+....+..+.
T Consensus 349 ~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~ 416 (472)
T 4g1t_A 349 QYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQ 416 (472)
T ss_dssp CHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHH
Confidence 999999999999999887653 45666655 46789999999999999999998877655554443
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.7e-27 Score=252.84 Aligned_cols=316 Identities=15% Similarity=0.084 Sum_probs=241.9
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH-HHHHHHhcCCCc----HHHHHHHHHHHHHcCCHHH
Q 005108 254 RKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVK-ECEEAVRLDPNY----WRAHQRLGSLLVRLGQVEN 328 (714)
Q Consensus 254 ~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~-~~~~al~~~p~~----~~a~~~la~~~~~~g~~~~ 328 (714)
..+.|+.+...++.+...+|. ++..+|+|++|+. .|++++++.|++ ...++.+|.++...|++++
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 82 (368)
T 1fch_A 13 DVDFWDKLQAELEEMAKRDAE----------AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPN 82 (368)
T ss_dssp -------------------------------------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHH
T ss_pred CcccHHHHHHHHHHHHcCCch----------hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHH
Confidence 444555666666666555543 5566799999999 999999998876 4578999999999999999
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 005108 329 ARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESS 408 (714)
Q Consensus 329 A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~ 408 (714)
|+..|++++...+.. ...+..++.++...|++++|+..|+++++.+|+ ....+..+|.+|...|++++|+..
T Consensus 83 A~~~~~~al~~~p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~ 154 (368)
T 1fch_A 83 AVLLFEAAVQQDPKH-------MEAWQYLGTTQAENEQELLAISALRRCLELKPD-NQTALMALAVSFTNESLQRQACEI 154 (368)
T ss_dssp HHHHHHHHHHSCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhCCCC-------HHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999998743222 245667788899999999999999999999997 466777899999999999999999
Q ss_pred hhccccCCCCCCCchhhh--hhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCC--CHHHHHHHHhHHHHHHHH
Q 005108 409 LSNIPKIEPSTVSSSQTR--FFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPR--NVEVAVLLNNVKLVARAR 484 (714)
Q Consensus 409 ~~~al~~~p~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~l~~~~~~~ 484 (714)
|+++++.+|.+....... ..........+..++.++ ..|++++|+.+|+++++.+|+ +..++..+
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l---------- 223 (368)
T 1fch_A 155 LRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGL---------- 223 (368)
T ss_dssp HHHHHHTSTTTGGGCC---------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHH----------
T ss_pred HHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHH----------
Confidence 999999999872211000 000000011122456666 899999999999999999999 77777765
Q ss_pred HHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccH
Q 005108 485 ARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKW 564 (714)
Q Consensus 485 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 564 (714)
|.++...|++++|+.+|+++++++|+++.++..+|.++...|++++|+..|+++++++|++..+++.+|.+|.++|++
T Consensus 224 --~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~ 301 (368)
T 1fch_A 224 --GVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAH 301 (368)
T ss_dssp --HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred --HHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCC-----------HHHHHHHHHHHHHhhhhcc
Q 005108 565 ADAVRDFEVLRRELPDD-----------NEIAESLFHAQVSLKKSRG 600 (714)
Q Consensus 565 ~eA~~~~~~al~~~p~~-----------~~~~~~L~~~~~~l~~~~~ 600 (714)
++|+.+|++++++.|++ ..++..+..++..+++.+.
T Consensus 302 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 348 (368)
T 1fch_A 302 REAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDA 348 (368)
T ss_dssp HHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGG
T ss_pred HHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHh
Confidence 99999999999999988 8899999999888876554
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=6.2e-27 Score=243.93 Aligned_cols=265 Identities=15% Similarity=0.032 Sum_probs=238.4
Q ss_pred hhcCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHhcCCCcHH
Q 005108 233 NRGGICGGDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLG-RIGEAVKECEEAVRLDPNYWR 311 (714)
Q Consensus 233 ~~~~~~p~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~ 311 (714)
.....+|.+...+..++.+++..|++++|+.+|+++++.+|+++.+++.+|.++...| ++++|+..|+++++++|++..
T Consensus 47 ~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 126 (330)
T 3hym_B 47 VVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGP 126 (330)
T ss_dssp HHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTH
T ss_pred HHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHH
Confidence 3344678888899999999999999999999999999999999999999999999999 999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 005108 312 AHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMC 391 (714)
Q Consensus 312 a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~ 391 (714)
+|..+|.++...|++++|+..|++ +++..|+.. ..+..
T Consensus 127 ~~~~l~~~~~~~~~~~~A~~~~~~-----------------------------------------a~~~~~~~~-~~~~~ 164 (330)
T 3hym_B 127 AWIAYGHSFAVESEHDQAMAAYFT-----------------------------------------AAQLMKGCH-LPMLY 164 (330)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHH-----------------------------------------HHHHTTTCS-HHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHH-----------------------------------------HHHhccccH-HHHHH
Confidence 999999999988888888777654 445555543 34455
Q ss_pred HHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccC-------
Q 005108 392 RVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQID------- 464 (714)
Q Consensus 392 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------- 464 (714)
+|.+|...|++++|+.+|+++++.+|.+ ..++..+|.++...|++++|+.+++++++..
T Consensus 165 l~~~~~~~~~~~~A~~~~~~al~~~~~~--------------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 230 (330)
T 3hym_B 165 IGLEYGLTNNSKLAERFFSQALSIAPED--------------PFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEV 230 (330)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCTTC--------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSC
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhCCCC--------------hHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccc
Confidence 9999999999999999999999999998 7889999999999999999999999999876
Q ss_pred --CCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 005108 465 --PRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALL 542 (714)
Q Consensus 465 --p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 542 (714)
|....++..+ |.++...|++++|+.+|+++++++|++..++..+|.++..+|++++|+++|+++++
T Consensus 231 ~~~~~~~~~~~l------------a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 298 (330)
T 3hym_B 231 TVDKWEPLLNNL------------GHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALG 298 (330)
T ss_dssp TTTTCCHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred cccHHHHHHHHH------------HHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence 5566677655 99999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHH-HHhccHH
Q 005108 543 IQPNYTKALLRRAASN-SKLEKWA 565 (714)
Q Consensus 543 ~~p~~~~~~~~la~~~-~~~g~~~ 565 (714)
++|++..++..++.++ ...|+.+
T Consensus 299 ~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 299 LRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp TCSCCHHHHHHHHHHHHTTTTC--
T ss_pred cCCCchHHHHHHHHHHHHHhCchh
Confidence 9999999999999998 5566543
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.96 E-value=8.1e-28 Score=255.15 Aligned_cols=260 Identities=13% Similarity=0.022 Sum_probs=236.7
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC-HHHHHHHHHhhcCCCChHHH
Q 005108 267 KAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVRLGQ-VENARRHLCLSGQQADPTEV 345 (714)
Q Consensus 267 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~-~~~A~~~~~~al~~~~~~~~ 345 (714)
.++.++|++..+|..+|.++...|++++|+..|+++++++|++..+|+.+|.++..+|+ +++|+..|
T Consensus 88 ~ai~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~------------ 155 (382)
T 2h6f_A 88 VQIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYI------------ 155 (382)
T ss_dssp SEECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHH------------
T ss_pred hhhhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHH------------
Confidence 35667888999999999999999999999999999999999999999999999998885 77776665
Q ss_pred HHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhh
Q 005108 346 HRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQT 425 (714)
Q Consensus 346 ~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 425 (714)
+++++++|+ ...+|..+|.++..+|++++|+.+|+++++++|++
T Consensus 156 -----------------------------~~al~l~P~-~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~------ 199 (382)
T 2h6f_A 156 -----------------------------TAIIEEQPK-NYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKN------ 199 (382)
T ss_dssp -----------------------------HHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC------
T ss_pred -----------------------------HHHHHHCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccC------
Confidence 566778887 46777889999999999999999999999999999
Q ss_pred hhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhh-CcCHHHH-----
Q 005108 426 RFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFK-SERFTEA----- 499 (714)
Q Consensus 426 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~-~g~~~~A----- 499 (714)
..+|+.+|.++..+|++++|+.+|+++++++|++..+|..+ |.++.. .|.+++|
T Consensus 200 --------~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~l------------g~~l~~l~~~~~eA~~~~e 259 (382)
T 2h6f_A 200 --------YHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQR------------YFVISNTTGYNDRAVLERE 259 (382)
T ss_dssp --------HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHH------------HHHHHHTTCSCSHHHHHHH
T ss_pred --------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHH------------HHHHHHhcCcchHHHHHHH
Confidence 88999999999999999999999999999999999999876 899999 5665777
Q ss_pred HHHHHHhhccCCCCHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc---------cHHHHH
Q 005108 500 CQAYGEGLRFDPSNSVLYCNRAACWFKLG--QWERSVEDSNQALLIQPNYTKALLRRAASNSKLE---------KWADAV 568 (714)
Q Consensus 500 ~~~~~~al~~~p~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---------~~~eA~ 568 (714)
+.+|+++++++|++..+|++++.++...| ++++|++.++++ +.+|++..++..+|.+|.++| .+++|+
T Consensus 260 l~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~ 338 (382)
T 2h6f_A 260 VQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKAL 338 (382)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHH
Confidence 59999999999999999999999999988 799999999998 999999999999999999985 359999
Q ss_pred HHHHHH-HHhCCCCHHHHHHHHHHHHHh
Q 005108 569 RDFEVL-RRELPDDNEIAESLFHAQVSL 595 (714)
Q Consensus 569 ~~~~~a-l~~~p~~~~~~~~L~~~~~~l 595 (714)
++|+++ ++++|.....+..+.......
T Consensus 339 ~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 339 ELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 999999 999999999998887766543
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.3e-27 Score=251.89 Aligned_cols=279 Identities=18% Similarity=0.111 Sum_probs=221.6
Q ss_pred HHHHHHHHHhCCCCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhhc
Q 005108 262 LSMYDKAISLAPRNA----AFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVRLGQVENARRHLCLSG 337 (714)
Q Consensus 262 l~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al 337 (714)
+..+.+++...+.++ ..++.+|.++...|++++|+..|+++++.+|++..+|..+|.+|...|++++|+..|+++
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a- 125 (365)
T 4eqf_A 47 VSASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRC- 125 (365)
T ss_dssp ------CCCCCSSCTTTTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-
T ss_pred hHHHHHhhhcccCCcccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHH-
Confidence 344555555555544 459999999999999999999999999999999999999999999998888888777554
Q ss_pred CCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCC
Q 005108 338 QQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEP 417 (714)
Q Consensus 338 ~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 417 (714)
++.+|+ ....+..+|.+|...|++++|+.+|+++++++|
T Consensus 126 ----------------------------------------l~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 164 (365)
T 4eqf_A 126 ----------------------------------------LELQPN-NLKALMALAVSYTNTSHQQDACEALKNWIKQNP 164 (365)
T ss_dssp ----------------------------------------HHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCH
T ss_pred ----------------------------------------HhcCCC-CHHHHHHHHHHHHccccHHHHHHHHHHHHHhCc
Confidence 444554 355666788888888888888888888888877
Q ss_pred CCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCC--CHHHHHHHHhHHHHHHHHHHHhHHhhCcC
Q 005108 418 STVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPR--NVEVAVLLNNVKLVARARARGNDLFKSER 495 (714)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~l~~~~~~~~~g~~~~~~g~ 495 (714)
.+..... ........+..++.++...|++++|+.+|+++++++|+ +..++..+ |.++...|+
T Consensus 165 ~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l------------~~~~~~~g~ 228 (365)
T 4eqf_A 165 KYKYLVK----NKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGL------------GVLFHLSGE 228 (365)
T ss_dssp HHHCC-----------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHH------------HHHHHHHTC
T ss_pred cchHHHh----hhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHH------------HHHHHHCCC
Confidence 6511000 00011334556799999999999999999999999999 88887765 999999999
Q ss_pred HHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 005108 496 FTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLR 575 (714)
Q Consensus 496 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al 575 (714)
+++|+.+|+++++.+|+++.+|.++|.+|..+|++++|+..|+++++++|++..+++.+|.+|..+|++++|+.+|++++
T Consensus 229 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 308 (365)
T 4eqf_A 229 FNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTAL 308 (365)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCC------------HHHHHHHHHHHHHhhhh
Q 005108 576 RELPDD------------NEIAESLFHAQVSLKKS 598 (714)
Q Consensus 576 ~~~p~~------------~~~~~~L~~~~~~l~~~ 598 (714)
+++|++ ..++..|..+...+++.
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 343 (365)
T 4eqf_A 309 SLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQP 343 (365)
T ss_dssp HHHHCC------------CHHHHHHHHHHHHHTCH
T ss_pred HhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcH
Confidence 999874 56677777777666543
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.94 E-value=8.4e-26 Score=228.94 Aligned_cols=180 Identities=13% Similarity=-0.007 Sum_probs=142.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCC
Q 005108 388 LSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRN 467 (714)
Q Consensus 388 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 467 (714)
.+..+|.++...|++++|+.+|+++++.+|.+ ..++..+|.++...|++++|+.+|+++++.+|.+
T Consensus 76 ~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~--------------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~ 141 (272)
T 3u4t_A 76 DFEYYGKILMKKGQDSLAIQQYQAAVDRDTTR--------------LDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTD 141 (272)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC--------------THHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCC
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhcCccc--------------HHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCc
Confidence 34456667777777777777777777777776 5678888888888888888888888888888888
Q ss_pred HHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHhC
Q 005108 468 VEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQ---WERSVEDSNQALLIQ 544 (714)
Q Consensus 468 ~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~ 544 (714)
..++..+ |...+..+++++|+.+|+++++++|++..+++.+|.++..+|+ +++|+..|++++++.
T Consensus 142 ~~~~~~l------------~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 209 (272)
T 3u4t_A 142 PKVFYEL------------GQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVC 209 (272)
T ss_dssp HHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHH
T ss_pred HHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHH
Confidence 8877765 7344445588999999999999988888888899999998888 888999999988875
Q ss_pred ---CC-----CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005108 545 ---PN-----YTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAESLFHAQV 593 (714)
Q Consensus 545 ---p~-----~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~L~~~~~ 593 (714)
|+ ...++..+|.+|...|++++|+++|+++++++|+++.+++.+..+..
T Consensus 210 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~ 266 (272)
T 3u4t_A 210 APGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLE 266 (272)
T ss_dssp GGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC----
T ss_pred hcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhc
Confidence 44 23688889999999999999999999999999999998888766543
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=1e-25 Score=225.85 Aligned_cols=240 Identities=26% Similarity=0.412 Sum_probs=182.4
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc-------HHHH
Q 005108 241 DAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNY-------WRAH 313 (714)
Q Consensus 241 ~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~a~ 313 (714)
.++.++.+|..++..|++++|+.+|+++++.+ .+..++..+|.++..+|++++|+..|+++++++|++ ..++
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 46788889999999999999999999999888 888888999999999999999999999888877665 4555
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 005108 314 QRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRV 393 (714)
Q Consensus 314 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la 393 (714)
..+|.++...|++++|+.+|
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~------------------------------------------------------------ 102 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYY------------------------------------------------------------ 102 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHH------------------------------------------------------------
T ss_pred HHHHHHHHHcccHHHHHHHH------------------------------------------------------------
Confidence 55555555555555554444
Q ss_pred HHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHH
Q 005108 394 EALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVL 473 (714)
Q Consensus 394 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 473 (714)
+++++++|. +.++...|++++|+..+++++..+|.+..++..
T Consensus 103 ----------------~~a~~~~~~----------------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 144 (258)
T 3uq3_A 103 ----------------QKSLTEHRT----------------------ADILTKLRNAEKELKKAEAEAYVNPEKAEEARL 144 (258)
T ss_dssp ----------------HHHHHHCCC----------------------HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred ----------------HHHHhcCch----------------------hHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHH
Confidence 333333332 123445566777777777777777776666665
Q ss_pred HHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 005108 474 LNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLR 553 (714)
Q Consensus 474 l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 553 (714)
+ |.++...|++++|+.+|+++++.+|.+..++..+|.++...|++++|+..|+++++++|++..+++.
T Consensus 145 ~------------~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 212 (258)
T 3uq3_A 145 E------------GKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIR 212 (258)
T ss_dssp H------------HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred H------------HHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 4 7778888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHhccHHHHHHHHHHHHHhC------CCCHHHHHHHHHH
Q 005108 554 RAASNSKLEKWADAVRDFEVLRREL------PDDNEIAESLFHA 591 (714)
Q Consensus 554 la~~~~~~g~~~eA~~~~~~al~~~------p~~~~~~~~L~~~ 591 (714)
+|.++..+|++++|+.+|+++++++ |++.++...+.++
T Consensus 213 l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 213 KATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence 8888888888888888888888888 8877777777654
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.7e-25 Score=226.89 Aligned_cols=263 Identities=14% Similarity=0.094 Sum_probs=196.7
Q ss_pred HHHCCCHHHHHHHHHHHHhcCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHc
Q 005108 286 LTGLGRIGEAVKECEEAVRLDPNY-WRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKV 364 (714)
Q Consensus 286 ~~~~g~~~~A~~~~~~al~~~p~~-~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~ 364 (714)
.+..|+|++|+..++++...+|++ .++...++.+|..+|++++|+..++.. ++.. +..+..++..+...
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~------~~a~~~la~~~~~~ 78 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPE------LQAVRMFAEYLASH 78 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHH------HHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChh------HHHHHHHHHHHcCC
Confidence 344455555555544444444443 234444455555555555554443221 1111 12222333444555
Q ss_pred CCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHH
Q 005108 365 GDWKSALREGDAAIAA--GADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQ 442 (714)
Q Consensus 365 g~~~~Al~~~~~al~~--~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~ 442 (714)
+++++|++.+++++.. +|+ ...++..+|.++...|++++|++.|++ |.+ ..++..++.
T Consensus 79 ~~~~~A~~~l~~ll~~~~~P~-~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~--------------~~~~~~l~~ 138 (291)
T 3mkr_A 79 SRRDAIVAELDREMSRSVDVT-NTTFLLMAASIYFYDQNPDAALRTLHQ-----GDS--------------LECMAMTVQ 138 (291)
T ss_dssp TTHHHHHHHHHHHHHSCCCCS-CHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCS--------------HHHHHHHHH
T ss_pred CcHHHHHHHHHHHHhcccCCC-CHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCC--------------HHHHHHHHH
Confidence 5666666666776665 365 456777899999999999999999998 666 778999999
Q ss_pred HHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHH
Q 005108 443 IEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAA 522 (714)
Q Consensus 443 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 522 (714)
++..+|++++|++.|+++++.+|++....... .....+...|++++|+..|+++++.+|+++.+++++|.
T Consensus 139 ~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~----------a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~ 208 (291)
T 3mkr_A 139 ILLKLDRLDLARKELKKMQDQDEDATLTQLAT----------AWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAA 208 (291)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH----------HHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHH----------HHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 99999999999999999999999986443322 11244556799999999999999999999999999999
Q ss_pred HHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHH-HHHHHHHHHHhCCCCHHHHHHH
Q 005108 523 CWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWAD-AVRDFEVLRRELPDDNEIAESL 588 (714)
Q Consensus 523 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~e-A~~~~~~al~~~p~~~~~~~~L 588 (714)
++.++|++++|+..|+++++++|+++.+++++|.++..+|++++ +.++++++++++|+++.+....
T Consensus 209 ~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d~~ 275 (291)
T 3mkr_A 209 CHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEYR 275 (291)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 99999999999999999999999999999999999999999976 5789999999999999987643
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.94 E-value=2e-25 Score=226.08 Aligned_cols=252 Identities=13% Similarity=0.034 Sum_probs=209.2
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc----HHHHHHH
Q 005108 241 DAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNY----WRAHQRL 316 (714)
Q Consensus 241 ~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~a~~~l 316 (714)
+++.++.+|..++..|++++|+..|+++++.+|++..++..+|.+|..+|++++|+..|+++++ .|.+ ..+|..+
T Consensus 2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~l 80 (272)
T 3u4t_A 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYY 80 (272)
T ss_dssp ---CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHH
Confidence 3567788999999999999999999999999999988999999999999999999999999998 3333 4457777
Q ss_pred HHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 005108 317 GSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEAL 396 (714)
Q Consensus 317 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~ 396 (714)
|.++...|++++|+.+| +++++.+|.. ...+..+|.+|
T Consensus 81 g~~~~~~~~~~~A~~~~-----------------------------------------~~a~~~~~~~-~~~~~~l~~~~ 118 (272)
T 3u4t_A 81 GKILMKKGQDSLAIQQY-----------------------------------------QAAVDRDTTR-LDMYGQIGSYF 118 (272)
T ss_dssp HHHHHHTTCHHHHHHHH-----------------------------------------HHHHHHSTTC-THHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHH-----------------------------------------HHHHhcCccc-HHHHHHHHHHH
Confidence 77777777777666665 4555666764 45677799999
Q ss_pred HHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHh
Q 005108 397 LKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNN 476 (714)
Q Consensus 397 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 476 (714)
...|++++|+.+|+++++.+|.+ ..+++.+|...+..+++++|+..|+++++++|++...+..+
T Consensus 119 ~~~~~~~~A~~~~~~al~~~~~~--------------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~-- 182 (272)
T 3u4t_A 119 YNKGNFPLAIQYMEKQIRPTTTD--------------PKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWR-- 182 (272)
T ss_dssp HHTTCHHHHHHHHGGGCCSSCCC--------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHH--
T ss_pred HHccCHHHHHHHHHHHhhcCCCc--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHH--
Confidence 99999999999999999999998 88999999555556799999999999999999998888766
Q ss_pred HHHHHHHHHHHhHHhhCcC---HHHHHHHHHHhhccC---CC-----CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Q 005108 477 VKLVARARARGNDLFKSER---FTEACQAYGEGLRFD---PS-----NSVLYCNRAACWFKLGQWERSVEDSNQALLIQP 545 (714)
Q Consensus 477 l~~~~~~~~~g~~~~~~g~---~~~A~~~~~~al~~~---p~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 545 (714)
|.++...++ +++|+..|++++++. |+ ...++..+|.+|...|++++|+++|+++++++|
T Consensus 183 ----------~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p 252 (272)
T 3u4t_A 183 ----------ARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDP 252 (272)
T ss_dssp ----------HHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred ----------HHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc
Confidence 888888888 999999999999875 44 237899999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHh
Q 005108 546 NYTKALLRRAASNSKL 561 (714)
Q Consensus 546 ~~~~~~~~la~~~~~~ 561 (714)
++..++-.++.+....
T Consensus 253 ~~~~a~~~l~~~~~~~ 268 (272)
T 3u4t_A 253 TNKKAIDGLKMKLEHH 268 (272)
T ss_dssp TCHHHHHHHC------
T ss_pred cHHHHHHHhhhhhccc
Confidence 9999998887766544
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.2e-25 Score=222.18 Aligned_cols=222 Identities=14% Similarity=0.111 Sum_probs=194.2
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHH
Q 005108 275 NAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKH 354 (714)
Q Consensus 275 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~ 354 (714)
.+..+..+|.++...|++++|+..|+++++.+ .+..++..+|.++..+|++++|+.+|++++
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~----------------- 65 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAV----------------- 65 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHH-----------------
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHH-----------------
Confidence 46788999999999999999999999999999 889999999999999999999988876553
Q ss_pred HHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhH
Q 005108 355 LSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEA 434 (714)
Q Consensus 355 ~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 434 (714)
+..|... +.. ....
T Consensus 66 ------------------------~~~~~~~-------------------------------~~~-----------~~~~ 79 (258)
T 3uq3_A 66 ------------------------EQGREMR-------------------------------ADY-----------KVIS 79 (258)
T ss_dssp ------------------------HHHHHTT-------------------------------CCH-----------HHHH
T ss_pred ------------------------HhCcccc-------------------------------cch-----------HHHH
Confidence 1111100 000 0115
Q ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCH
Q 005108 435 YTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNS 514 (714)
Q Consensus 435 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~ 514 (714)
.++..+|.++...|++++|+.+|++++.+.|. +.++...|++++|+..++++++.+|.+.
T Consensus 80 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--------------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 139 (258)
T 3uq3_A 80 KSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT--------------------ADILTKLRNAEKELKKAEAEAYVNPEKA 139 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC--------------------HHHHHHHHHHHHHHHHHHHHHHCCHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhcCch--------------------hHHHHHHhHHHHHHHHHHHHHHcCcchH
Confidence 67899999999999999999999999999886 3346677889999999999999999999
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005108 515 VLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAESLFHAQVS 594 (714)
Q Consensus 515 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~L~~~~~~ 594 (714)
.++..+|.++...|++++|+..|+++++.+|++..+++.+|.++..+|++++|+.+|+++++.+|++..++..+..++..
T Consensus 140 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~ 219 (258)
T 3uq3_A 140 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA 219 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred hhhhcc
Q 005108 595 LKKSRG 600 (714)
Q Consensus 595 l~~~~~ 600 (714)
+++...
T Consensus 220 ~g~~~~ 225 (258)
T 3uq3_A 220 VKEYAS 225 (258)
T ss_dssp TTCHHH
T ss_pred HhhHHH
Confidence 776543
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1.4e-24 Score=225.74 Aligned_cols=269 Identities=14% Similarity=0.111 Sum_probs=220.7
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHH
Q 005108 276 AAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHL 355 (714)
Q Consensus 276 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~ 355 (714)
...++.+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+.+|++++
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~------------------ 82 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHAR------------------ 82 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH------------------
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH------------------
Confidence 45678999999999999999999999999999999999999999999988888888776554
Q ss_pred HHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHH
Q 005108 356 SKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAY 435 (714)
Q Consensus 356 ~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~ 435 (714)
+.+|. ....+..+|.++...|++++|+..|+++++.+|.+....... ........
T Consensus 83 -----------------------~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 137 (327)
T 3cv0_A 83 -----------------------MLDPK-DIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVN-LQADVDID 137 (327)
T ss_dssp -----------------------HHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC-------------
T ss_pred -----------------------hcCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHH-hHHHHHHH
Confidence 34444 244555677778888888888888888877777762111000 00000001
Q ss_pred HHHHH-HH-HHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCC
Q 005108 436 TFFVR-AQ-IEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSN 513 (714)
Q Consensus 436 ~~~~l-a~-~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~ 513 (714)
....+ +. ++...|++++|+.+++++++..|++..++..+ |.++...|++++|+.+|+++++.+|++
T Consensus 138 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l------------a~~~~~~~~~~~A~~~~~~~~~~~~~~ 205 (327)
T 3cv0_A 138 DLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASL------------GVLYNLSNNYDSAAANLRRAVELRPDD 205 (327)
T ss_dssp --------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHH------------HHHHHHhccHHHHHHHHHHHHHhCCCc
Confidence 11122 44 58889999999999999999999999888766 999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC------------C
Q 005108 514 SVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPD------------D 581 (714)
Q Consensus 514 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~------------~ 581 (714)
..++..+|.++...|++++|+..|+++++.+|++..+++.+|.++..+|++++|+++|++++++.|+ +
T Consensus 206 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 285 (327)
T 3cv0_A 206 AQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREAT 285 (327)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 7
Q ss_pred HHHHHHHHHHHHHhhhhc
Q 005108 582 NEIAESLFHAQVSLKKSR 599 (714)
Q Consensus 582 ~~~~~~L~~~~~~l~~~~ 599 (714)
..++..+..++..+++.+
T Consensus 286 ~~~~~~l~~~~~~~g~~~ 303 (327)
T 3cv0_A 286 RSMWDFFRMLLNVMNRPD 303 (327)
T ss_dssp HHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHhcCCHH
Confidence 888888888887776544
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=2e-25 Score=239.74 Aligned_cols=313 Identities=15% Similarity=0.072 Sum_probs=241.1
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc------CCCc
Q 005108 240 GDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRN----AAFRSNRAAALTGLGRIGEAVKECEEAVRL------DPNY 309 (714)
Q Consensus 240 ~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~ 309 (714)
.....++.+|..++..|++++|+.+|+++++..|.+ ..++..+|.++...|++++|+.+|++++.+ .|..
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 456788999999999999999999999999999998 468999999999999999999999999877 3455
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCC--------------------HHH
Q 005108 310 WRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGD--------------------WKS 369 (714)
Q Consensus 310 ~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~--------------------~~~ 369 (714)
..++..+|.++...|++++|+.+|++++...... .........+..++.++...|+ +++
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISREL-NDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc-ccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 7899999999999999999999999987521111 0112334567778888888898 999
Q ss_pred HHHHHHHHHHcCC-----CCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHH
Q 005108 370 ALREGDAAIAAGA-----DFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIE 444 (714)
Q Consensus 370 Al~~~~~al~~~p-----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~ 444 (714)
|+..+++++.... ......+..+|.+|...|++++|+.++++++++.+... .......++..+|.++
T Consensus 166 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--------~~~~~~~~~~~la~~~ 237 (406)
T 3sf4_A 166 AVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG--------DKAAERRAYSNLGNAY 237 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcC--------CcHHHHHHHHHHHHHH
Confidence 9999988887622 11234567788889999999999999988887765531 1112355788888899
Q ss_pred HHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCC------HHHHH
Q 005108 445 MALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSN------SVLYC 518 (714)
Q Consensus 445 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~ 518 (714)
...|++++|+.+|++++.+.+....... ....+..+|.++...|++++|+.+|++++++.+.. ..++.
T Consensus 238 ~~~g~~~~A~~~~~~al~~~~~~~~~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 311 (406)
T 3sf4_A 238 IFLGEFETASEYYKKTLLLARQLKDRAV------EAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACW 311 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHH------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHcCChHHHHHHHHHHHHHHHhCcCchH------HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 9999999999999888876554311100 01122345888888899999999888888874433 66788
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHhccHHHH
Q 005108 519 NRAACWFKLGQWERSVEDSNQALLIQ------PNYTKALLRRAASNSKLEKWADA 567 (714)
Q Consensus 519 ~la~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~g~~~eA 567 (714)
.+|.+|..+|++++|+.+|++++++. +....++..++.++..+|+...+
T Consensus 312 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~ 366 (406)
T 3sf4_A 312 SLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYST 366 (406)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHHH
Confidence 88888888899999999888888763 23357788888888888876443
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.4e-24 Score=212.55 Aligned_cols=211 Identities=18% Similarity=0.232 Sum_probs=173.6
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 005108 239 GGDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGS 318 (714)
Q Consensus 239 p~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~ 318 (714)
|+++..++.+|..++..|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|+++++++|++..++..+|.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~ 81 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSE 81 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 67788899999999999999999999999999999999999999999999999999999999999999999888888888
Q ss_pred HHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 005108 319 LLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLK 398 (714)
Q Consensus 319 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~ 398 (714)
++..++. .
T Consensus 82 ~~~~~~~---------~--------------------------------------------------------------- 89 (217)
T 2pl2_A 82 AYVALYR---------Q--------------------------------------------------------------- 89 (217)
T ss_dssp HHHHHHH---------T---------------------------------------------------------------
T ss_pred HHHHhhh---------h---------------------------------------------------------------
Confidence 7754310 0
Q ss_pred cCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHH
Q 005108 399 LHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVK 478 (714)
Q Consensus 399 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~ 478 (714)
. .. .+...|++++|+..|+++++++|++..++..+
T Consensus 90 -----------------~-~~-----------------------~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~l---- 124 (217)
T 2pl2_A 90 -----------------A-ED-----------------------RERGKGYLEQALSVLKDAERVNPRYAPLHLQR---- 124 (217)
T ss_dssp -----------------C-SS-----------------------HHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH----
T ss_pred -----------------h-hh-----------------------hcccccCHHHHHHHHHHHHHhCcccHHHHHHH----
Confidence 0 00 01235889999999999999999999998876
Q ss_pred HHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005108 479 LVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASN 558 (714)
Q Consensus 479 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 558 (714)
|.++...|++++|+..|+++++++ +++.+++++|.+|..+|++++|+..|+++++++|++..+++.+|.++
T Consensus 125 --------g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~ 195 (217)
T 2pl2_A 125 --------GLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASAL 195 (217)
T ss_dssp --------HHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred --------HHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 999999999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred HHhccHHHHHHHHHHHH
Q 005108 559 SKLEKWADAVRDFEVLR 575 (714)
Q Consensus 559 ~~~g~~~eA~~~~~~al 575 (714)
..+|++++|+..|+++-
T Consensus 196 ~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 196 LLKGKAEEAARAAALEH 212 (217)
T ss_dssp TC---------------
T ss_pred HHccCHHHHHHHHHHHh
Confidence 99999999999998764
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.92 E-value=3.1e-24 Score=210.09 Aligned_cols=186 Identities=20% Similarity=0.166 Sum_probs=147.3
Q ss_pred hhhhhcCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Q 005108 230 VNRNRGGICGGDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNY 309 (714)
Q Consensus 230 ~~~~~~~~~p~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 309 (714)
.+.....++|+++.+++.+|.++...|++++|+..|+++++++|++..+++.+|.++..++.. ...
T Consensus 27 ~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~-------------~~~- 92 (217)
T 2pl2_A 27 LFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQ-------------AED- 92 (217)
T ss_dssp HHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHT-------------CSS-
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhh-------------hhh-
Confidence 334445689999999999999999999999999999999999999999999999999876210 011
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 005108 310 WRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLS 389 (714)
Q Consensus 310 ~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~ 389 (714)
. ....|++++|+..|+++++.+|++ ...+
T Consensus 93 ---------~-----------------------------------------~~~~g~~~~A~~~~~~al~~~P~~-~~~~ 121 (217)
T 2pl2_A 93 ---------R-----------------------------------------ERGKGYLEQALSVLKDAERVNPRY-APLH 121 (217)
T ss_dssp ---------H-----------------------------------------HHHHHHHHHHHHHHHHHHHHCTTC-HHHH
T ss_pred ---------h-----------------------------------------cccccCHHHHHHHHHHHHHhCccc-HHHH
Confidence 0 012366777788888889999974 5677
Q ss_pred HHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHH
Q 005108 390 MCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVE 469 (714)
Q Consensus 390 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 469 (714)
..+|.+|..+|++++|+..|+++++++ ++ ..+++.+|.++...|++++|+..|+++++++|++..
T Consensus 122 ~~lg~~~~~~g~~~~A~~~~~~al~~~-~~--------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~ 186 (217)
T 2pl2_A 122 LQRGLVYALLGERDKAEASLKQALALE-DT--------------PEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLD 186 (217)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-CC--------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHH
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcc-cc--------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Confidence 789999999999999999999999999 76 788999999999999999999999999999999999
Q ss_pred HHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhh
Q 005108 470 VAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGL 507 (714)
Q Consensus 470 ~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 507 (714)
++..+ |.++...|++++|+..|+++-
T Consensus 187 ~~~~l------------a~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 187 LRVRY------------ASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHH------------HHHHTC---------------
T ss_pred HHHHH------------HHHHHHccCHHHHHHHHHHHh
Confidence 98866 999999999999999998764
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.92 E-value=1.5e-22 Score=226.29 Aligned_cols=326 Identities=10% Similarity=0.001 Sum_probs=251.5
Q ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 005108 237 ICGGDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRL 316 (714)
Q Consensus 237 ~~p~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l 316 (714)
.+|.+...|..++. +...|++++|...|+++++.+|.+..+|..++..+...|++++|+..|++++...| +...|..+
T Consensus 8 ~~P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p-~~~lw~~~ 85 (530)
T 2ooe_A 8 ENPYDLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL-HIDLWKCY 85 (530)
T ss_dssp HCTTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCC-CHHHHHHH
T ss_pred hCCCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-ChHHHHHH
Confidence 46677777777777 36778888888888888888888888888888888888888888888888888777 34454444
Q ss_pred H------------------------------------------HHHHH---------cCCHHHHHHHHHhhcCCCChH--
Q 005108 317 G------------------------------------------SLLVR---------LGQVENARRHLCLSGQQADPT-- 343 (714)
Q Consensus 317 a------------------------------------------~~~~~---------~g~~~~A~~~~~~al~~~~~~-- 343 (714)
+ ..... .|++++|+.+|++++..+...
T Consensus 86 ~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~ 165 (530)
T 2ooe_A 86 LSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIE 165 (530)
T ss_dssp HHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHH
T ss_pred HHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHH
Confidence 3 22222 567888888888888733221
Q ss_pred -HHHHHHHHHH----------------HHHHh---------------------------------HH-----HHH-----
Q 005108 344 -EVHRLQVVEK----------------HLSKC---------------------------------TD-----ARK----- 363 (714)
Q Consensus 344 -~~~~l~~~~~----------------~~~~a---------------------------------~~-----~~~----- 363 (714)
.+.....++. .+..+ .. ...
T Consensus 166 ~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~ 245 (530)
T 2ooe_A 166 QLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPL 245 (530)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCc
Confidence 1111111000 00000 00 000
Q ss_pred -cCC----HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-------cCCHH-------HHHHHhhcccc-CCCCCCCch
Q 005108 364 -VGD----WKSALREGDAAIAAGADFSPQLSMCRVEALLK-------LHQLE-------DAESSLSNIPK-IEPSTVSSS 423 (714)
Q Consensus 364 -~g~----~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~-------~g~~~-------~A~~~~~~al~-~~p~~~~~~ 423 (714)
.++ .+.++..|++++...|. .+.+|..++..+.. .|+++ +|+.+|+++++ ..|++
T Consensus 246 ~~~~~~~~~~~a~~~y~~al~~~p~-~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~---- 320 (530)
T 2ooe_A 246 RTEDQTLITKRVMFAYEQCLLVLGH-HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKN---- 320 (530)
T ss_dssp CCSCSHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSC----
T ss_pred cCCcchhHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCccc----
Confidence 112 13677899999999987 47888889999886 79987 99999999997 78988
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCH-HHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHH
Q 005108 424 QTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNV-EVAVLLNNVKLVARARARGNDLFKSERFTEACQA 502 (714)
Q Consensus 424 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~ 502 (714)
..+|..++.++...|++++|...|++++++.|.+. .+|..+ +..+.+.|++++|+..
T Consensus 321 ----------~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~------------~~~~~~~~~~~~A~~~ 378 (530)
T 2ooe_A 321 ----------MLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQY------------MKFARRAEGIKSGRMI 378 (530)
T ss_dssp ----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHH------------HHHHHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHH------------HHHHHHhcCHHHHHHH
Confidence 88999999999999999999999999999999985 467655 8888889999999999
Q ss_pred HHHhhccCCCCHHHHHHHHHH-HHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Q 005108 503 YGEGLRFDPSNSVLYCNRAAC-WFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDD 581 (714)
Q Consensus 503 ~~~al~~~p~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~ 581 (714)
|+++++..|.....+...+.+ +...|++++|+..|+++++..|+++.+|..++.++.++|++++|...|+++++..|.+
T Consensus 379 ~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~ 458 (530)
T 2ooe_A 379 FKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 458 (530)
T ss_dssp HHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSC
T ss_pred HHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCC
Confidence 999999999888888777765 4569999999999999999999999999999999999999999999999999998776
Q ss_pred HH----HHHHHHHH
Q 005108 582 NE----IAESLFHA 591 (714)
Q Consensus 582 ~~----~~~~L~~~ 591 (714)
++ ++......
T Consensus 459 ~~~~~~lw~~~~~~ 472 (530)
T 2ooe_A 459 PEKSGEIWARFLAF 472 (530)
T ss_dssp GGGCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 65 55444433
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.92 E-value=9.6e-25 Score=235.44 Aligned_cols=291 Identities=16% Similarity=0.102 Sum_probs=233.5
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHhc------CCCc
Q 005108 240 GDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNA----AFRSNRAAALTGLGRIGEAVKECEEAVRL------DPNY 309 (714)
Q Consensus 240 ~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~ 309 (714)
..+..++.+|..++..|++++|+.+|+++++.+|++. .++..+|.+|..+|++++|+.+|++++++ .+..
T Consensus 46 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 125 (411)
T 4a1s_A 46 SMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGE 125 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHH
Confidence 4567788999999999999999999999999999986 58999999999999999999999999987 5667
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 005108 310 WRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLS 389 (714)
Q Consensus 310 ~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~ 389 (714)
..++..+|.+|...|++++|+.+|++++... ...++. ......+
T Consensus 126 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---------------------~~~~~~---------------~~~~~~~ 169 (411)
T 4a1s_A 126 AKSSGNLGNTLKVMGRFDEAAICCERHLTLA---------------------RQLGDR---------------LSEGRAL 169 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---------------------HHHTCH---------------HHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH---------------------HHhhch---------------HHHHHHH
Confidence 8899999999999999999999998775210 000100 0112345
Q ss_pred HHHHHHHHHcCC-----------------HHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHH
Q 005108 390 MCRVEALLKLHQ-----------------LEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFEN 452 (714)
Q Consensus 390 ~~la~~~~~~g~-----------------~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 452 (714)
..+|.+|...|+ +++|+.++++++++.+.. ........++..+|.++...|++++
T Consensus 170 ~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~--------~~~~~~~~~~~~la~~~~~~g~~~~ 241 (411)
T 4a1s_A 170 YNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDL--------GDRGAQGRACGNLGNTYYLLGDFQA 241 (411)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHH--------TCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHHHHHcCChHH
Confidence 557777777777 777777777776543221 1111236689999999999999999
Q ss_pred HHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCC------HHHHHHHHHHHHH
Q 005108 453 AVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSN------SVLYCNRAACWFK 526 (714)
Q Consensus 453 A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~ 526 (714)
|+.+|++++++.+....... ....+..+|.++...|++++|+.+|++++++.+.. ..++..+|.+|..
T Consensus 242 A~~~~~~al~~~~~~~~~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 315 (411)
T 4a1s_A 242 AIEHHQERLRIAREFGDRAA------ERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTL 315 (411)
T ss_dssp HHHHHHHHHHHHHHHTCHHH------HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCcHH------HHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 99999999987664322110 11123355999999999999999999999987643 6889999999999
Q ss_pred hCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Q 005108 527 LGQWERSVEDSNQALLIQPN------YTKALLRRAASNSKLEKWADAVRDFEVLRRELPD 580 (714)
Q Consensus 527 ~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~ 580 (714)
+|++++|+.+|++++++.+. ...++..+|.+|..+|++++|+++|++++++.+.
T Consensus 316 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 316 LHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred cCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 99999999999999987543 2468999999999999999999999999999864
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.92 E-value=3.6e-22 Score=220.96 Aligned_cols=310 Identities=11% Similarity=-0.001 Sum_probs=201.0
Q ss_pred CcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhcCCCcHH
Q 005108 240 GDAEELKRMGNELYR----KGCFGEALSMYDKAISLAPRNAAFRSNRAAALTG----LGRIGEAVKECEEAVRLDPNYWR 311 (714)
Q Consensus 240 ~~~~~~~~~g~~~~~----~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~ 311 (714)
.++.+++.+|..|.. .+++++|+.+|+++.+. .++.+++.+|.+|.. .+++++|+.+|+++.+. ++..
T Consensus 73 ~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~ 148 (490)
T 2xm6_A 73 GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDS 148 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHH
T ss_pred CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHH
Confidence 455666666666666 66666666666666553 355566666666665 55666666666666553 3455
Q ss_pred HHHHHHHHHHH----cCCHHHHHHHHHhhcCCCChHHHHHHHHH---------------------------HHHHHHhHH
Q 005108 312 AHQRLGSLLVR----LGQVENARRHLCLSGQQADPTEVHRLQVV---------------------------EKHLSKCTD 360 (714)
Q Consensus 312 a~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~l~~~---------------------------~~~~~~a~~ 360 (714)
+++.+|.+|.. .+++++|+.+|+++.+..++.....+..+ ..++.++.+
T Consensus 149 a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~ 228 (490)
T 2xm6_A 149 GQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSGDELGQLHLADM 228 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 66666666655 55666666666665554443333222221 123334444
Q ss_pred HHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHhhccccCCCCCCCchhhhhhhhhh
Q 005108 361 ARK----VGDWKSALREGDAAIAAGADFSPQLSMCRVEALLK----LHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLS 432 (714)
Q Consensus 361 ~~~----~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 432 (714)
+.. .+++++|+.+|+++++.+ ....+..++.+|.. .+++++|+.+|+++.+. .+
T Consensus 229 y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~--~~------------- 290 (490)
T 2xm6_A 229 YYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ--GN------------- 290 (490)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT--TC-------------
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc--CC-------------
Confidence 443 566666666666666543 24445556666666 66666666666666554 22
Q ss_pred hHHHHHHHHHHHHHh-----CcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCc---CHHHHHHHHH
Q 005108 433 EAYTFFVRAQIEMAL-----GRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSE---RFTEACQAYG 504 (714)
Q Consensus 433 ~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g---~~~~A~~~~~ 504 (714)
..+++.+|.+|... +++++|+.+|+++++.. +..++..+ |.+|...| ++++|+.+|+
T Consensus 291 -~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~--~~~a~~~l------------g~~y~~~g~~~~~~~A~~~~~ 355 (490)
T 2xm6_A 291 -SDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG--DATAQANL------------GAIYFRLGSEEEHKKAVEWFR 355 (490)
T ss_dssp -HHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT--CHHHHHHH------------HHHHHHSCCHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC--CHHHHHHH------------HHHHHhCCCcccHHHHHHHHH
Confidence 44666777777766 67777777777776653 34444443 77777755 7888888888
Q ss_pred HhhccCCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hccHHHHHHHHHHHHH
Q 005108 505 EGLRFDPSNSVLYCNRAACWFK----LGQWERSVEDSNQALLIQPNYTKALLRRAASNSK----LEKWADAVRDFEVLRR 576 (714)
Q Consensus 505 ~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~eA~~~~~~al~ 576 (714)
++++. .++.+++++|.+|.. .+++++|+.+|+++++. .++.+++.+|.+|.. .+++++|+.+|+++++
T Consensus 356 ~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 431 (490)
T 2xm6_A 356 KAAAK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ--GLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTAST 431 (490)
T ss_dssp HHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 88876 578888888888888 88888888888888875 357888888888888 7888889999988888
Q ss_pred hCCC---CHHHHHHHHH
Q 005108 577 ELPD---DNEIAESLFH 590 (714)
Q Consensus 577 ~~p~---~~~~~~~L~~ 590 (714)
..|+ ++.+...|..
T Consensus 432 ~~~~~~~~~~a~~~l~~ 448 (490)
T 2xm6_A 432 NDMNLFGTENRNITEKK 448 (490)
T ss_dssp HHCCHHHHHHHHHHHTT
T ss_pred CCCCCcCCHHHHHHHHh
Confidence 8854 6666555544
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.92 E-value=4.7e-24 Score=221.99 Aligned_cols=290 Identities=16% Similarity=0.100 Sum_probs=225.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc------CCCcHH
Q 005108 242 AEELKRMGNELYRKGCFGEALSMYDKAISLAPRN----AAFRSNRAAALTGLGRIGEAVKECEEAVRL------DPNYWR 311 (714)
Q Consensus 242 ~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~ 311 (714)
...++..|..++..|++++|+.+|+++++.+|++ ..++..+|.++...|++++|+..+++++++ .+....
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 84 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 84 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence 4678889999999999999999999999999998 478889999999999999999999999877 445577
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 005108 312 AHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMC 391 (714)
Q Consensus 312 a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~ 391 (714)
++..+|.++...|++++|+.+|++++.... ..++.. .....+..
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~---------------------~~~~~~---------------~~~~~~~~ 128 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISR---------------------ELNDKV---------------GEARALYN 128 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHH---------------------HTTCHH---------------HHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHH---------------------HhcCch---------------HHHHHHHH
Confidence 899999999999999999999887753100 000000 01223445
Q ss_pred HHHHHHHcCC--------------------HHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHH
Q 005108 392 RVEALLKLHQ--------------------LEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFE 451 (714)
Q Consensus 392 la~~~~~~g~--------------------~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 451 (714)
++.+|...|+ +++|+.++++++...... ........++..+|.++...|+++
T Consensus 129 l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~--------~~~~~~~~~~~~l~~~~~~~~~~~ 200 (338)
T 3ro2_A 129 LGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTAL--------GDRAAQGRAFGNLGNTHYLLGNFR 200 (338)
T ss_dssp HHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHH--------TCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhc--------CCHHHHHHHHHHHHHHHHHhCCHH
Confidence 6777777777 777777777766542211 011123668999999999999999
Q ss_pred HHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCC------HHHHHHHHHHHH
Q 005108 452 NAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSN------SVLYCNRAACWF 525 (714)
Q Consensus 452 ~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~ 525 (714)
+|+.++++++++.+...... .....+..+|.++...|++++|+.+|++++++.+.. ..++..+|.+|.
T Consensus 201 ~A~~~~~~a~~~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~ 274 (338)
T 3ro2_A 201 DAVIAHEQRLLIAKEFGDKA------AERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYT 274 (338)
T ss_dssp HHHHHHHHHHHHHHHHTCHH------HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCChH------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHH
Confidence 99999999997654322110 011123355999999999999999999999876554 778999999999
Q ss_pred HhCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Q 005108 526 KLGQWERSVEDSNQALLIQPNY------TKALLRRAASNSKLEKWADAVRDFEVLRRELPDD 581 (714)
Q Consensus 526 ~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~ 581 (714)
.+|++++|+.++++++++.+.. ..++..+|.+|..+|++++|+.+|++++++.+..
T Consensus 275 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 336 (338)
T 3ro2_A 275 LLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREV 336 (338)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC----
T ss_pred HhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhh
Confidence 9999999999999999875432 4688999999999999999999999999987653
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.5e-21 Score=215.88 Aligned_cols=318 Identities=11% Similarity=0.001 Sum_probs=216.8
Q ss_pred CCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhcCCC
Q 005108 237 ICGGDAEELKRMGNELYR----KGCFGEALSMYDKAISLAPRNAAFRSNRAAALTG----LGRIGEAVKECEEAVRLDPN 308 (714)
Q Consensus 237 ~~p~~~~~~~~~g~~~~~----~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~ 308 (714)
..+.++++++.+|..|+. .+++++|+.+|+++++. .++.+++.+|.+|.. .+++++|+.+|+++.+. .
T Consensus 34 a~~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~ 109 (490)
T 2xm6_A 34 AESGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--G 109 (490)
T ss_dssp HHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--T
T ss_pred HHCCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--C
Confidence 356789999999999999 99999999999999986 679999999999999 99999999999999875 5
Q ss_pred cHHHHHHHHHHHHH----cCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHH----cCCHHHHHHHHHHHHHc
Q 005108 309 YWRAHQRLGSLLVR----LGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARK----VGDWKSALREGDAAIAA 380 (714)
Q Consensus 309 ~~~a~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~----~g~~~~Al~~~~~al~~ 380 (714)
+..+++.||.+|.. .+++++|+.+|+++....++. .++.++.+|.. .+++++|+.+|+++++.
T Consensus 110 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~---------a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~ 180 (490)
T 2xm6_A 110 LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDS---------GQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ 180 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHH---------HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHH---------HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 78999999999999 899999999999998765443 34555666666 77888888888888876
Q ss_pred CCCCCHHHHHHHHHHHHH----cCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHH----hCcHHH
Q 005108 381 GADFSPQLSMCRVEALLK----LHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMA----LGRFEN 452 (714)
Q Consensus 381 ~p~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~ 452 (714)
+ ....+..+|.+|.. .+++++|+.+|+++.+.. + ..+++.+|.+|.. .+++++
T Consensus 181 ~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~--------------~~a~~~lg~~y~~g~g~~~~~~~ 241 (490)
T 2xm6_A 181 G---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG--D--------------ELGQLHLADMYYFGIGVTQDYTQ 241 (490)
T ss_dssp T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--C--------------HHHHHHHHHHHHHTSSSCCCHHH
T ss_pred C---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC--C--------------HHHHHHHHHHHHcCCCCCCCHHH
Confidence 3 46667778888887 788888888888887653 2 3355555665554 555666
Q ss_pred HHHHHHHHhccCCCCHHHHHHHHhHH------------------------HHHHHHHHHhHHhhC-----cCHHHHHHHH
Q 005108 453 AVTAAEKAGQIDPRNVEVAVLLNNVK------------------------LVARARARGNDLFKS-----ERFTEACQAY 503 (714)
Q Consensus 453 A~~~~~~al~~~p~~~~~~~~l~~l~------------------------~~~~~~~~g~~~~~~-----g~~~~A~~~~ 503 (714)
|+.+|+++++. .+...+..+..+. .......+|.+|... +++++|+.+|
T Consensus 242 A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~ 319 (490)
T 2xm6_A 242 SRVLFSQSAEQ--GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWY 319 (490)
T ss_dssp HHHHHHHHHTT--TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHH
T ss_pred HHHHHHHHHHC--CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHH
Confidence 66666665543 2233333220000 000011225555554 5556666666
Q ss_pred HHhhccCCCCHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hccHHHHHHHHHHHHH
Q 005108 504 GEGLRFDPSNSVLYCNRAACWFKLG---QWERSVEDSNQALLIQPNYTKALLRRAASNSK----LEKWADAVRDFEVLRR 576 (714)
Q Consensus 504 ~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~eA~~~~~~al~ 576 (714)
+++++. .++.+++++|.+|...| ++++|+++|+++++. +++.+++.+|.+|.. .+++++|+.+|+++.+
T Consensus 320 ~~a~~~--~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~ 395 (490)
T 2xm6_A 320 TKSAEQ--GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAE 395 (490)
T ss_dssp HHHHHT--TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHhc--CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHh
Confidence 555554 24455555666555544 555666666666554 345566666666655 5566666666666655
Q ss_pred hCCCCHHHHHHHHHHHHH
Q 005108 577 ELPDDNEIAESLFHAQVS 594 (714)
Q Consensus 577 ~~p~~~~~~~~L~~~~~~ 594 (714)
. .++.+...|..++..
T Consensus 396 ~--~~~~a~~~Lg~~y~~ 411 (490)
T 2xm6_A 396 Q--GLSAAQVQLGEIYYY 411 (490)
T ss_dssp T--TCHHHHHHHHHHHHH
T ss_pred C--CCHHHHHHHHHHHHc
Confidence 4 245555555555443
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=3.9e-24 Score=229.62 Aligned_cols=310 Identities=14% Similarity=0.048 Sum_probs=250.0
Q ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHH
Q 005108 274 RNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNY----WRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQ 349 (714)
Q Consensus 274 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~ 349 (714)
.....+..+|.++...|++++|+..|++++++.|.+ ..++..+|.++...|++++|+.+|++++...... .....
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~ 85 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI-GDQLG 85 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc-cccHH
Confidence 456788999999999999999999999999999987 4689999999999999999999999987511000 01123
Q ss_pred HHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCC-----CHHHHHHHHHHHHHcCC--------------------HHH
Q 005108 350 VVEKHLSKCTDARKVGDWKSALREGDAAIAAGADF-----SPQLSMCRVEALLKLHQ--------------------LED 404 (714)
Q Consensus 350 ~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~-----~~~~~~~la~~~~~~g~--------------------~~~ 404 (714)
....+..++.++...|++++|+..+++++...+.. ....+..+|.+|...|+ +++
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 45667888999999999999999999999875531 24467789999999999 999
Q ss_pred HHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHH
Q 005108 405 AESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARAR 484 (714)
Q Consensus 405 A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~ 484 (714)
|+.++++++++.... ........++..+|.++...|++++|+.++++++++.+....... ....+.
T Consensus 166 A~~~~~~al~~~~~~--------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~------~~~~~~ 231 (406)
T 3sf4_A 166 AVDFYEENLSLVTAL--------GDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAA------ERRAYS 231 (406)
T ss_dssp HHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHH------HHHHHH
T ss_pred HHHHHHHHHHHHHhc--------cCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHH------HHHHHH
Confidence 999999988763322 111223678999999999999999999999999987654432110 111233
Q ss_pred HHHhHHhhCcCHHHHHHHHHHhhccCCCC------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC------HHHHH
Q 005108 485 ARGNDLFKSERFTEACQAYGEGLRFDPSN------SVLYCNRAACWFKLGQWERSVEDSNQALLIQPNY------TKALL 552 (714)
Q Consensus 485 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~ 552 (714)
.+|.++...|++++|+.+|++++++.+.. ..++..+|.+|...|++++|+.+|++++++.+.. ..++.
T Consensus 232 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 311 (406)
T 3sf4_A 232 NLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACW 311 (406)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 55999999999999999999999886655 7889999999999999999999999999875443 67899
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhhhh
Q 005108 553 RRAASNSKLEKWADAVRDFEVLRRELPDD------NEIAESLFHAQVSLKKS 598 (714)
Q Consensus 553 ~la~~~~~~g~~~eA~~~~~~al~~~p~~------~~~~~~L~~~~~~l~~~ 598 (714)
.+|.+|..+|++++|+.+|++++++.+.. ..+...+..++..++..
T Consensus 312 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 312 SLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 99999999999999999999999884432 45666677777666654
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.3e-22 Score=208.00 Aligned_cols=278 Identities=13% Similarity=0.053 Sum_probs=231.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHH
Q 005108 249 GNELYRKGCFGEALSMYDKAISLAPRN-AAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVRLGQVE 327 (714)
Q Consensus 249 g~~~~~~g~~~~Al~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~ 327 (714)
.+.++..|+|++|+..+++....+|++ ......++.+|+.+|++++|+..++. .+|....++..++..+...++++
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---SSAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCCcHH
Confidence 456778899999999998887777776 45778889999999999999988865 35667888889999999999999
Q ss_pred HHHHHHHhhcCC-CChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 005108 328 NARRHLCLSGQQ-ADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAE 406 (714)
Q Consensus 328 ~A~~~~~~al~~-~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~ 406 (714)
+|++.|++++.. .+|... ..++.++.++...|++++|++.+++ | .....+..++.+|.++|++++|+
T Consensus 83 ~A~~~l~~ll~~~~~P~~~------~~~~~la~~~~~~g~~~~Al~~l~~-----~-~~~~~~~~l~~~~~~~g~~~~A~ 150 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNT------TFLLMAASIYFYDQNPDAALRTLHQ-----G-DSLECMAMTVQILLKLDRLDLAR 150 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCH------HHHHHHHHHHHHTTCHHHHHHHHTT-----C-CSHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhcccCCCCH------HHHHHHHHHHHHCCCHHHHHHHHhC-----C-CCHHHHHHHHHHHHHCCCHHHHH
Confidence 999999988753 233321 3466677888999999999999987 4 35778888999999999999999
Q ss_pred HHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHH--HHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHH
Q 005108 407 SSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRA--QIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARAR 484 (714)
Q Consensus 407 ~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la--~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~ 484 (714)
+.|+++++.+|++ .......+ .++...|++++|+..|+++++.+|+++.++..+
T Consensus 151 ~~l~~~~~~~p~~--------------~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~l---------- 206 (291)
T 3mkr_A 151 KELKKMQDQDEDA--------------TLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQ---------- 206 (291)
T ss_dssp HHHHHHHHHCTTC--------------HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHH----------
T ss_pred HHHHHHHhhCcCc--------------HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHH----------
Confidence 9999999999887 32222222 334456899999999999999999999988866
Q ss_pred HHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHH-HHHHHHHHHHhCCCCHHHHHHHHHHHHHhcc
Q 005108 485 ARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWER-SVEDSNQALLIQPNYTKALLRRAASNSKLEK 563 (714)
Q Consensus 485 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~-A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 563 (714)
|.++...|++++|+..|+++++.+|+++.+++++|.++..+|++++ +.++++++++++|+++.+. ....+.+.
T Consensus 207 --a~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~----d~~~~~~~ 280 (291)
T 3mkr_A 207 --AACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIK----EYRAKEND 280 (291)
T ss_dssp --HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH----HHHHHHHH
T ss_pred --HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHH----HHHHHHHH
Confidence 9999999999999999999999999999999999999999999976 5789999999999998655 45677777
Q ss_pred HHHHHHHH
Q 005108 564 WADAVRDF 571 (714)
Q Consensus 564 ~~eA~~~~ 571 (714)
|+++..-|
T Consensus 281 fd~~~~~~ 288 (291)
T 3mkr_A 281 FDRLVLQY 288 (291)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHc
Confidence 77777665
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.90 E-value=8.2e-23 Score=206.92 Aligned_cols=246 Identities=11% Similarity=0.006 Sum_probs=204.8
Q ss_pred HHcCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHH
Q 005108 253 YRKGCFGEALSMYDKAISLA----PRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVRLGQVEN 328 (714)
Q Consensus 253 ~~~g~~~~Al~~~~~al~~~----p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~ 328 (714)
...|++++|+..|+++++.. |.++.+++.+|.++...|++++|+..|+++++++|++..++..+|.++...|++++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHH
Confidence 34588999999999999973 45688999999999999999999999999999999999999999999998888888
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 005108 329 ARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESS 408 (714)
Q Consensus 329 A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~ 408 (714)
|+.+|++ +++.+|.. ...+..+|.+|...|++++|+.+
T Consensus 96 A~~~~~~-----------------------------------------al~~~~~~-~~~~~~la~~~~~~g~~~~A~~~ 133 (275)
T 1xnf_A 96 AYEAFDS-----------------------------------------VLELDPTY-NYAHLNRGIALYYGGRDKLAQDD 133 (275)
T ss_dssp HHHHHHH-----------------------------------------HHHHCTTC-THHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHH-----------------------------------------HHhcCccc-cHHHHHHHHHHHHhccHHHHHHH
Confidence 8777644 44556653 45566799999999999999999
Q ss_pred hhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHh
Q 005108 409 LSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGN 488 (714)
Q Consensus 409 ~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~ 488 (714)
|+++++.+|.+ ...+...+ ++...|++++|+..+++++...|.+...+. .+.
T Consensus 134 ~~~a~~~~~~~--------------~~~~~~~~-~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-------------~~~ 185 (275)
T 1xnf_A 134 LLAFYQDDPND--------------PFRSLWLY-LAEQKLDEKQAKEVLKQHFEKSDKEQWGWN-------------IVE 185 (275)
T ss_dssp HHHHHHHCTTC--------------HHHHHHHH-HHHHHHCHHHHHHHHHHHHHHSCCCSTHHH-------------HHH
T ss_pred HHHHHHhCCCC--------------hHHHHHHH-HHHHhcCHHHHHHHHHHHHhcCCcchHHHH-------------HHH
Confidence 99999999987 33333333 446779999999999999999888866543 267
Q ss_pred HHhhCcCHHHHHHHHHHhhccCCCC----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccH
Q 005108 489 DLFKSERFTEACQAYGEGLRFDPSN----SVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKW 564 (714)
Q Consensus 489 ~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 564 (714)
.+...+++++|+..++++++..|.. ..+++.+|.+|..+|++++|+..|+++++++|++.. ..+.++..+|++
T Consensus 186 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~~~~~l~~~ 262 (275)
T 1xnf_A 186 FYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV---EHRYALLELSLL 262 (275)
T ss_dssp HHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH---HHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHH---HHHHHHHHHHHH
Confidence 7888899999999999999887643 789999999999999999999999999999997744 347788999999
Q ss_pred HHHHHHH
Q 005108 565 ADAVRDF 571 (714)
Q Consensus 565 ~eA~~~~ 571 (714)
++|++.|
T Consensus 263 ~~a~~~~ 269 (275)
T 1xnf_A 263 GQDQDDL 269 (275)
T ss_dssp HHC----
T ss_pred HhhHHHH
Confidence 9999887
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.90 E-value=1.5e-22 Score=192.28 Aligned_cols=173 Identities=14% Similarity=0.208 Sum_probs=165.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccC
Q 005108 385 SPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQID 464 (714)
Q Consensus 385 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 464 (714)
...+|..+|.+|..+|++++|+.+|+++++++|++ ..++..+|.++...|++++|+..+++++...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~--------------~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~ 69 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNN--------------VETLLKLGKTYMDIGLPNDAIESLKKFVVLD 69 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC--------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 46788889999999999999999999999999999 8899999999999999999999999999999
Q ss_pred CCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Q 005108 465 PRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQ 544 (714)
Q Consensus 465 p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 544 (714)
|++..++..+ |.++...+++++|+..++++++++|.+..++..+|.+|.++|++++|++.|+++++++
T Consensus 70 ~~~~~~~~~~------------~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~ 137 (184)
T 3vtx_A 70 TTSAEAYYIL------------GSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK 137 (184)
T ss_dssp CCCHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred chhHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc
Confidence 9999988866 9999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHH
Q 005108 545 PNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNE 583 (714)
Q Consensus 545 p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~ 583 (714)
|++..+++.+|.+|.++|++++|+++|+++++++|++..
T Consensus 138 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~a~ 176 (184)
T 3vtx_A 138 PGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKAK 176 (184)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHHHH
T ss_pred chhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccCHH
Confidence 999999999999999999999999999999999987643
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.90 E-value=2.5e-21 Score=196.45 Aligned_cols=95 Identities=19% Similarity=0.206 Sum_probs=72.8
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhcCCCcHHHH
Q 005108 238 CGGDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTG----LGRIGEAVKECEEAVRLDPNYWRAH 313 (714)
Q Consensus 238 ~p~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~ 313 (714)
.|+++.+++.+|..++..|++++|+.+|+++++ |+++.+++.+|.+|.. .+++++|+.+|+++++.+ +..++
T Consensus 2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~ 77 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGC 77 (273)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHH
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHH
Confidence 356778888888888888888888888888887 6777888888888888 888888888888888774 67777
Q ss_pred HHHHHHHHH----cCCHHHHHHHHHhh
Q 005108 314 QRLGSLLVR----LGQVENARRHLCLS 336 (714)
Q Consensus 314 ~~la~~~~~----~g~~~~A~~~~~~a 336 (714)
+.+|.+|.. .+++++|+.+|+++
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a 104 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKA 104 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHH
Confidence 778877777 66666666666444
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.90 E-value=1.6e-22 Score=200.79 Aligned_cols=214 Identities=14% Similarity=0.111 Sum_probs=185.5
Q ss_pred HHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhh
Q 005108 352 EKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGML 431 (714)
Q Consensus 352 ~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 431 (714)
..++.++..+...|++++|+..|+++++.+|.. ...+..+|.++...|++++|+.+|+++++.+|.+
T Consensus 24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~------------ 90 (243)
T 2q7f_A 24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEENKED-AIPYINFANLLSSVNELERALAFYDKALELDSSA------------ 90 (243)
T ss_dssp ------------------CCTTHHHHHTTCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------------
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCccc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc------------
Confidence 456777888999999999999999999999874 6777789999999999999999999999999988
Q ss_pred hhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCC
Q 005108 432 SEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDP 511 (714)
Q Consensus 432 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p 511 (714)
..++..+|.++...|++++|+.+|+++++..|.+..++..+ |.++...|++++|+.+|+++++..|
T Consensus 91 --~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~------------a~~~~~~~~~~~A~~~~~~~~~~~~ 156 (243)
T 2q7f_A 91 --ATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYML------------GTVLVKLEQPKLALPYLQRAVELNE 156 (243)
T ss_dssp --HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHH------------HHHHHHTSCHHHHHHHHHHHHHHCT
T ss_pred --hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHH------------HHHHHHhccHHHHHHHHHHHHHhCC
Confidence 78899999999999999999999999999999999888766 9999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005108 512 SNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAESLFHA 591 (714)
Q Consensus 512 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~L~~~ 591 (714)
.+..++..+|.++...|++++|+..|+++++..|++..++..+|.+|..+|++++|+.+|+++++++|++..++..+..+
T Consensus 157 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 236 (243)
T 2q7f_A 157 NDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLL 236 (243)
T ss_dssp TCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC-
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998877655
Q ss_pred H
Q 005108 592 Q 592 (714)
Q Consensus 592 ~ 592 (714)
.
T Consensus 237 ~ 237 (243)
T 2q7f_A 237 G 237 (243)
T ss_dssp -
T ss_pred H
Confidence 4
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.89 E-value=3.5e-21 Score=195.40 Aligned_cols=231 Identities=13% Similarity=0.039 Sum_probs=196.0
Q ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHhhcCCCChHHHHH
Q 005108 272 APRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVR----LGQVENARRHLCLSGQQADPTEVHR 347 (714)
Q Consensus 272 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~ 347 (714)
+|.++.+++.+|.++...|++++|+.+|+++++ +++..+++.+|.+|.. .+++++|+.+|++++
T Consensus 2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~---------- 69 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKAC---------- 69 (273)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH----------
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHH----------
Confidence 477889999999999999999999999999998 7778899999999998 888888888776654
Q ss_pred HHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHhhccccCCCCCCCch
Q 005108 348 LQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLK----LHQLEDAESSLSNIPKIEPSTVSSS 423 (714)
Q Consensus 348 l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~ 423 (714)
+.+ ....+..+|.+|.. .+++++|+.+|+++++.+ +
T Consensus 70 -------------------------------~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~---- 109 (273)
T 1ouv_A 70 -------------------------------DLN---YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--Y---- 109 (273)
T ss_dssp -------------------------------HTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--C----
T ss_pred -------------------------------HCC---CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--C----
Confidence 222 34556678888888 899999999999988764 4
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHH----hCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhh----CcC
Q 005108 424 QTRFFGMLSEAYTFFVRAQIEMA----LGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFK----SER 495 (714)
Q Consensus 424 ~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~----~g~ 495 (714)
..+++.+|.+|.. .+++++|+.+|+++++.+ +..++..+ |.++.. .++
T Consensus 110 ----------~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~l------------g~~~~~~~~~~~~ 165 (273)
T 1ouv_A 110 ----------AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTIL------------GSLYDAGRGTPKD 165 (273)
T ss_dssp ----------HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHH------------HHHHHHTSSSCCC
T ss_pred ----------ccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHH------------HHHHHcCCCCCCC
Confidence 6688999999999 999999999999999875 45555544 888888 899
Q ss_pred HHHHHHHHHHhhccCCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hccHHHH
Q 005108 496 FTEACQAYGEGLRFDPSNSVLYCNRAACWFK----LGQWERSVEDSNQALLIQPNYTKALLRRAASNSK----LEKWADA 567 (714)
Q Consensus 496 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~eA 567 (714)
+++|+.+|+++++. .++.+++++|.+|.. .+++++|+.+|+++++.++ ..+++.+|.+|.. .+++++|
T Consensus 166 ~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A 241 (273)
T 1ouv_A 166 LKKALASYDKACDL--KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQA 241 (273)
T ss_dssp HHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTH
T ss_pred HHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHH
Confidence 99999999999987 468899999999999 9999999999999999865 7899999999999 9999999
Q ss_pred HHHHHHHHHhCCCCH
Q 005108 568 VRDFEVLRRELPDDN 582 (714)
Q Consensus 568 ~~~~~~al~~~p~~~ 582 (714)
+++|++++++.|++.
T Consensus 242 ~~~~~~a~~~~~~~a 256 (273)
T 1ouv_A 242 IENFKKGCKLGAKGA 256 (273)
T ss_dssp HHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHcCCHHH
Confidence 999999999987643
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.89 E-value=2.5e-22 Score=199.30 Aligned_cols=219 Identities=17% Similarity=0.161 Sum_probs=144.6
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 005108 241 DAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLL 320 (714)
Q Consensus 241 ~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 320 (714)
.+..++.+|..++..|++++|+.+|+++++.+|.+..++..+|.++...|++++|+..|+++++.+|.+..++..+|.++
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 101 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVY 101 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 46778889999999999999999999999999999999999999999999999999999999999999888888888888
Q ss_pred HHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 005108 321 VRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLH 400 (714)
Q Consensus 321 ~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g 400 (714)
...|++++|+.+|+++ ++.
T Consensus 102 ~~~~~~~~A~~~~~~~-----------------------------------------~~~-------------------- 120 (243)
T 2q7f_A 102 VVKEMYKEAKDMFEKA-----------------------------------------LRA-------------------- 120 (243)
T ss_dssp HHTTCHHHHHHHHHHH-----------------------------------------HHH--------------------
T ss_pred HHhccHHHHHHHHHHH-----------------------------------------HHh--------------------
Confidence 7777777776665433 222
Q ss_pred CHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHH
Q 005108 401 QLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLV 480 (714)
Q Consensus 401 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~ 480 (714)
+|.+ ..++..+|.++...|++++|+.+++++++..|++..++..+
T Consensus 121 ---------------~~~~--------------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l------ 165 (243)
T 2q7f_A 121 ---------------GMEN--------------GDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQF------ 165 (243)
T ss_dssp ---------------TCCS--------------HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHH------
T ss_pred ---------------CCCC--------------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHH------
Confidence 2333 33455566666666666666666666666666666655544
Q ss_pred HHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005108 481 ARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSK 560 (714)
Q Consensus 481 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 560 (714)
|.++...|++++|+.+|+++++..|++..++..+|.+|...|++++|+.+|+++++++|++..++..++.+...
T Consensus 166 ------~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~ 239 (243)
T 2q7f_A 166 ------GMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHH 239 (243)
T ss_dssp ------HHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC----
T ss_pred ------HHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHHhh
Confidence 66667777777777777777777777777777777777777777777777777777777777776666655544
Q ss_pred h
Q 005108 561 L 561 (714)
Q Consensus 561 ~ 561 (714)
.
T Consensus 240 ~ 240 (243)
T 2q7f_A 240 H 240 (243)
T ss_dssp -
T ss_pred c
Confidence 3
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.89 E-value=2.7e-21 Score=193.32 Aligned_cols=211 Identities=13% Similarity=0.042 Sum_probs=197.5
Q ss_pred HHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhh
Q 005108 351 VEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGM 430 (714)
Q Consensus 351 ~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 430 (714)
...++.++..+...|++++|+..|+++++.+|.. ...+..+|.++...|++++|+++|+++++.+|.+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~----------- 104 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSS-ADAHAALAVVFQTEMEPKLADEEYRKALASDSRN----------- 104 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----------
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCc-----------
Confidence 4567788888999999999999999999999874 6777789999999999999999999999999988
Q ss_pred hhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhc--cCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhc
Q 005108 431 LSEAYTFFVRAQIEMALGRFENAVTAAEKAGQ--IDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLR 508 (714)
Q Consensus 431 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~ 508 (714)
..++..+|.++...|++++|+++|++++. ..|.+..++..+ |.++...|++++|+.+|+++++
T Consensus 105 ---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l------------a~~~~~~g~~~~A~~~~~~~~~ 169 (252)
T 2ho1_A 105 ---ARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENL------------GLVSLQMKKPAQAKEYFEKSLR 169 (252)
T ss_dssp ---HHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHh
Confidence 78899999999999999999999999999 777777777655 9999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005108 509 FDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAESL 588 (714)
Q Consensus 509 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~L 588 (714)
..|.+..++..+|.++..+|++++|+..|+++++..|++..++..++.++...|++++|.++++++++++|+++.+...+
T Consensus 170 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 249 (252)
T 2ho1_A 170 LNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEFQ 249 (252)
T ss_dssp HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHHHH
T ss_pred cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999887654
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.89 E-value=3.3e-21 Score=192.64 Aligned_cols=216 Identities=16% Similarity=0.106 Sum_probs=177.0
Q ss_pred CCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHH
Q 005108 237 ICGGD-AEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQR 315 (714)
Q Consensus 237 ~~p~~-~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~ 315 (714)
.+|.+ +..++.+|..++..|++++|+.+|+++++.+|.+..++..+|.++...|++++|++.|+++++.+|.+..++..
T Consensus 31 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 110 (252)
T 2ho1_A 31 KGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNN 110 (252)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHH
Confidence 34554 78899999999999999999999999999999999999999999999999999999999999999998888888
Q ss_pred HHHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 005108 316 LGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEA 395 (714)
Q Consensus 316 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~ 395 (714)
+|.++...|++++|+.+|++++..
T Consensus 111 la~~~~~~g~~~~A~~~~~~~~~~-------------------------------------------------------- 134 (252)
T 2ho1_A 111 YGGFLYEQKRYEEAYQRLLEASQD-------------------------------------------------------- 134 (252)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTC--------------------------------------------------------
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhC--------------------------------------------------------
Confidence 888888888777777776554310
Q ss_pred HHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHH
Q 005108 396 LLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLN 475 (714)
Q Consensus 396 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 475 (714)
...|.+ ..++..+|.++...|++++|+.+|+++++..|.+..++..+
T Consensus 135 ------------------~~~~~~--------------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l- 181 (252)
T 2ho1_A 135 ------------------TLYPER--------------SRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEM- 181 (252)
T ss_dssp ------------------TTCTTH--------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHH-
T ss_pred ------------------ccCccc--------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHH-
Confidence 022333 55677777777888888888888888888888777776655
Q ss_pred hHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHH
Q 005108 476 NVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALL 552 (714)
Q Consensus 476 ~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 552 (714)
|.++...|++++|+.+|+++++..|.+...+..++.++...|++++|++++++++++.|++..++.
T Consensus 182 -----------a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 247 (252)
T 2ho1_A 182 -----------ADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQE 247 (252)
T ss_dssp -----------HHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHH
T ss_pred -----------HHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 778888888888888888888888888888888888888888888888888888888888776654
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.88 E-value=6.9e-22 Score=217.19 Aligned_cols=223 Identities=17% Similarity=0.164 Sum_probs=185.8
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH-HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 005108 257 CFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRI-GEAVKECEEAVRLDPNYWRAHQRLGSLLVRLGQVENARRHLCL 335 (714)
Q Consensus 257 ~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~ 335 (714)
++++|+..++++....|.++.+++.+|.++..+|++ ++|+.+|+++++++|++..+|+.+|.+|..+|++++|+.+|++
T Consensus 83 ~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 367788888888888999999999999999999999 9999999999999999999999999999988888888777755
Q ss_pred hcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc---------CCHHHHH
Q 005108 336 SGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKL---------HQLEDAE 406 (714)
Q Consensus 336 al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~---------g~~~~A~ 406 (714)
+ ++.+|+ ...+..+|.+|..+ |++++|+
T Consensus 163 a-----------------------------------------l~~~p~--~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~ 199 (474)
T 4abn_A 163 A-----------------------------------------LTHCKN--KVSLQNLSMVLRQLQTDSGDEHSRHVMDSV 199 (474)
T ss_dssp H-----------------------------------------HTTCCC--HHHHHHHHHHHTTCCCSCHHHHHHHHHHHH
T ss_pred H-----------------------------------------HhhCCC--HHHHHHHHHHHHHhccCChhhhhhhHHHHH
Confidence 4 455555 46677789999998 9999999
Q ss_pred HHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHH
Q 005108 407 SSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARAR 486 (714)
Q Consensus 407 ~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~ 486 (714)
.+|+++++++|++ ..+|+.+|.+|... ++. .
T Consensus 200 ~~~~~al~~~p~~--------------~~~~~~lg~~~~~~-----------------------~~~------------~ 230 (474)
T 4abn_A 200 RQAKLAVQMDVLD--------------GRSWYILGNAYLSL-----------------------YFN------------T 230 (474)
T ss_dssp HHHHHHHHHCTTC--------------HHHHHHHHHHHHHH-----------------------HHH------------T
T ss_pred HHHHHHHHhCCCC--------------HHHHHHHHHHHHHH-----------------------HHh------------h
Confidence 9999999999998 88899999999876 000 0
Q ss_pred HhHHhhCcCHHHHHHHHHHhhccCC---CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcc
Q 005108 487 GNDLFKSERFTEACQAYGEGLRFDP---SNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEK 563 (714)
Q Consensus 487 g~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 563 (714)
+. ..|++++|+.+|+++++++| .++.+|+++|.+|..+|++++|++.|+++++++|++..++..++.++..+|+
T Consensus 231 ~~---~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~ 307 (474)
T 4abn_A 231 GQ---NPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSR 307 (474)
T ss_dssp TC---CHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred cc---ccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 11 33667777777777777777 7888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHH
Q 005108 564 WADAVRDFEVL 574 (714)
Q Consensus 564 ~~eA~~~~~~a 574 (714)
+++|++.+.+.
T Consensus 308 ~~eAi~~~~~~ 318 (474)
T 4abn_A 308 LTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHTTTC
T ss_pred HHHHHHHhccc
Confidence 88888877655
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.88 E-value=2.9e-21 Score=199.87 Aligned_cols=251 Identities=10% Similarity=-0.021 Sum_probs=184.5
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-------CCCH-------HHHHHHHHHHHh-cCCCcHHHHHHHHHHHHHc
Q 005108 259 GEALSMYDKAISLAPRNAAFRSNRAAALTG-------LGRI-------GEAVKECEEAVR-LDPNYWRAHQRLGSLLVRL 323 (714)
Q Consensus 259 ~~Al~~~~~al~~~p~~~~~~~~la~~~~~-------~g~~-------~~A~~~~~~al~-~~p~~~~a~~~la~~~~~~ 323 (714)
++|+..|++++..+|.++.+|+.+|..+.. .|++ ++|+..|+++++ ++|++..+|..+|.++...
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 789999999999999999999999998874 5885 899999999999 7999999999999988888
Q ss_pred CCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH
Q 005108 324 GQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLE 403 (714)
Q Consensus 324 g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~ 403 (714)
|++++|+..|+++ ++..|.....+|..++.++.+.|+++
T Consensus 113 ~~~~~A~~~~~~a-----------------------------------------l~~~p~~~~~~~~~~~~~~~~~~~~~ 151 (308)
T 2ond_A 113 MKYEKVHSIYNRL-----------------------------------------LAIEDIDPTLVYIQYMKFARRAEGIK 151 (308)
T ss_dssp TCHHHHHHHHHHH-----------------------------------------HTSSSSCTHHHHHHHHHHHHHHHCHH
T ss_pred CCHHHHHHHHHHH-----------------------------------------HhccccCccHHHHHHHHHHHHhcCHH
Confidence 8777777766554 34444433335666777778888888
Q ss_pred HHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHH-hCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHH
Q 005108 404 DAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMA-LGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVAR 482 (714)
Q Consensus 404 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~ 482 (714)
+|+..|+++++..|.. ..+|...+.+... .|++++|+.+|+++++.+|++..+|..+
T Consensus 152 ~A~~~~~~a~~~~p~~--------------~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~-------- 209 (308)
T 2ond_A 152 SGRMIFKKAREDARTR--------------HHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAY-------- 209 (308)
T ss_dssp HHHHHHHHHHTSTTCC--------------THHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHH--------
T ss_pred HHHHHHHHHHhcCCCC--------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH--------
Confidence 8888888888877766 4445545544333 5788888888888888888887777655
Q ss_pred HHHHHhHHhhCcCHHHHHHHHHHhhcc---CCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005108 483 ARARGNDLFKSERFTEACQAYGEGLRF---DPS-NSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASN 558 (714)
Q Consensus 483 ~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 558 (714)
+..+...|++++|+.+|+++++. .|+ ...+|..++..+.+.|++++|...++++++..|++..... ++.+
T Consensus 210 ----~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~~~~~-~~~~- 283 (308)
T 2ond_A 210 ----IDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYEGKE-TALL- 283 (308)
T ss_dssp ----HHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTSSCH-HHHH-
T ss_pred ----HHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccccccch-HHHH-
Confidence 77777888888888888888874 443 5677777788888888888888888888888777542221 1111
Q ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005108 559 SKLEKWADAVRDFEVLRRELPDDNEIAESL 588 (714)
Q Consensus 559 ~~~g~~~eA~~~~~~al~~~p~~~~~~~~L 588 (714)
..-.+.+.++|++++....|
T Consensus 284 ----------~~r~~~l~~~P~~~~~ln~l 303 (308)
T 2ond_A 284 ----------VDRYKFMDLYPCSASELKAL 303 (308)
T ss_dssp ----------HTTTCBTTBCSSCHHHHHTT
T ss_pred ----------HHHHHhcccCCCCHHHHHhc
Confidence 11114566777777766554
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.4e-20 Score=184.00 Aligned_cols=211 Identities=15% Similarity=0.026 Sum_probs=195.6
Q ss_pred HHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhh
Q 005108 351 VEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGM 430 (714)
Q Consensus 351 ~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 430 (714)
...++.++..+...|++++|+..++++++..|+. ...+..+|.++...|++++|+.+|+++++.+|.+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~----------- 75 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSDPKN-ELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDS----------- 75 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----------
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccc-hHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-----------
Confidence 3557778888999999999999999999999874 6677789999999999999999999999999998
Q ss_pred hhhHHHHHHHHHHHHHh-CcHHHHHHHHHHHhc--cCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhh
Q 005108 431 LSEAYTFFVRAQIEMAL-GRFENAVTAAEKAGQ--IDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGL 507 (714)
Q Consensus 431 ~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~--~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 507 (714)
..++..+|.++... |++++|+.+++++++ ..|.+...+..+ |.++...|++++|+.+|++++
T Consensus 76 ---~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l------------~~~~~~~~~~~~A~~~~~~~~ 140 (225)
T 2vq2_A 76 ---AEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNK------------GICSAKQGQFGLAEAYLKRSL 140 (225)
T ss_dssp ---HHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHH------------HHHHHHTTCHHHHHHHHHHHH
T ss_pred ---hHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHH------------HHHHHHcCCHHHHHHHHHHHH
Confidence 77899999999999 999999999999999 556556666655 999999999999999999999
Q ss_pred ccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHH
Q 005108 508 RFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQP-NYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAE 586 (714)
Q Consensus 508 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~ 586 (714)
+..|.+..++..+|.++...|++++|+..|+++++..| ++..++..++.++...|++++|..+++.+++.+|+++.+..
T Consensus 141 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 220 (225)
T 2vq2_A 141 AAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQT 220 (225)
T ss_dssp HHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHH
Confidence 99999999999999999999999999999999999999 99999999999999999999999999999999999999877
Q ss_pred HH
Q 005108 587 SL 588 (714)
Q Consensus 587 ~L 588 (714)
.+
T Consensus 221 ~l 222 (225)
T 2vq2_A 221 VL 222 (225)
T ss_dssp HH
T ss_pred Hh
Confidence 65
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.3e-20 Score=184.27 Aligned_cols=216 Identities=12% Similarity=0.017 Sum_probs=164.9
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 005108 238 CGGDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLG 317 (714)
Q Consensus 238 ~p~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la 317 (714)
.|.++..++.+|..++..|++++|+.+|+++++.+|++..++..+|.++...|++++|+..|+++++.+|.+..++..+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~ 83 (225)
T 2vq2_A 4 ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYG 83 (225)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 56678888899999999999999999999999999999999999999999999999999999999999988888888888
Q ss_pred HHHHHc-CCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 005108 318 SLLVRL-GQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEAL 396 (714)
Q Consensus 318 ~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~ 396 (714)
.++... |++++|+.+|++++. .|
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~------------------------------------------~~-------------- 107 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALA------------------------------------------DP-------------- 107 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHT------------------------------------------ST--------------
T ss_pred HHHHHhcCcHHHHHHHHHHHHc------------------------------------------Cc--------------
Confidence 888777 777777776654431 00
Q ss_pred HHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHh
Q 005108 397 LKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNN 476 (714)
Q Consensus 397 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 476 (714)
..|.+ ..++..+|.++...|++++|+.+|+++++..|++..++..+
T Consensus 108 ------------------~~~~~--------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l-- 153 (225)
T 2vq2_A 108 ------------------TYPTP--------------YIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKEL-- 153 (225)
T ss_dssp ------------------TCSCH--------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHH--
T ss_pred ------------------CCcch--------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHH--
Confidence 12222 44566677777777777777777777777777776666554
Q ss_pred HHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 005108 477 VKLVARARARGNDLFKSERFTEACQAYGEGLRFDP-SNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLR 553 (714)
Q Consensus 477 l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 553 (714)
|.++...|++++|+.+|+++++..| .+...+..++.++...|++++|..+++.+++.+|++..+...
T Consensus 154 ----------a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 221 (225)
T 2vq2_A 154 ----------ARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTV 221 (225)
T ss_dssp ----------HHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred ----------HHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 7777777777777777777777777 777777777777777777777777777777777777665543
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.8e-21 Score=213.91 Aligned_cols=206 Identities=15% Similarity=0.083 Sum_probs=189.6
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH-HHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHH
Q 005108 366 DWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQL-EDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIE 444 (714)
Q Consensus 366 ~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~ 444 (714)
.+++++..+++.....|. ...++..+|.+|...|++ ++|+.+|+++++++|.+ ..+|+.+|.+|
T Consensus 83 ~~~~al~~l~~~~~~~~~-~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~--------------~~a~~~lg~~~ 147 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQV-EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPEL--------------VEAWNQLGEVY 147 (474)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTC--------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCch-hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCC--------------HHHHHHHHHHH
Confidence 356667777777766664 677788899999999999 99999999999999998 88999999999
Q ss_pred HHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhC---------cCHHHHHHHHHHhhccCCCCHH
Q 005108 445 MALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKS---------ERFTEACQAYGEGLRFDPSNSV 515 (714)
Q Consensus 445 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~---------g~~~~A~~~~~~al~~~p~~~~ 515 (714)
...|++++|+.+|+++++++|+ ..++..+ |.++... |++++|+.+|+++++++|++..
T Consensus 148 ~~~g~~~~A~~~~~~al~~~p~-~~~~~~l------------g~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 214 (474)
T 4abn_A 148 WKKGDVTSAHTCFSGALTHCKN-KVSLQNL------------SMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGR 214 (474)
T ss_dssp HHHTCHHHHHHHHHHHHTTCCC-HHHHHHH------------HHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHcCCHHHHHHHHHHHHhhCCC-HHHHHHH------------HHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHH
Confidence 9999999999999999999999 5666655 9999999 9999999999999999999999
Q ss_pred HHHHHHHHHHHh--------CCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHH
Q 005108 516 LYCNRAACWFKL--------GQWERSVEDSNQALLIQP---NYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEI 584 (714)
Q Consensus 516 ~~~~la~~~~~~--------g~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~ 584 (714)
+|+++|.+|..+ |++++|+.+|+++++++| +++.+|+.+|.+|..+|++++|+++|+++++++|++..+
T Consensus 215 ~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a 294 (474)
T 4abn_A 215 SWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEP 294 (474)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence 999999999999 999999999999999999 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhc
Q 005108 585 AESLFHAQVSLKKSR 599 (714)
Q Consensus 585 ~~~L~~~~~~l~~~~ 599 (714)
+..+..++..+++..
T Consensus 295 ~~~l~~~~~~lg~~~ 309 (474)
T 4abn_A 295 QQREQQLLEFLSRLT 309 (474)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999988887776543
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.88 E-value=4.6e-20 Score=206.14 Aligned_cols=317 Identities=11% Similarity=-0.019 Sum_probs=235.9
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCC-CChH
Q 005108 265 YDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQ-ADPT 343 (714)
Q Consensus 265 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~-~~~~ 343 (714)
|+++++.+|.+..+|..++.. ...|++++|+..|+++++.+|.+...|..++..+.+.|++++|+..|++++.. ++..
T Consensus 2 le~al~~~P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~ 80 (530)
T 2ooe_A 2 AEKKLEENPYDLDAWSILIRE-AQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHID 80 (530)
T ss_dssp HHHHHHHCTTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHH
T ss_pred hhhHhhhCCCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChH
Confidence 688999999999999999984 88999999999999999999999999999999999999999999999999983 3333
Q ss_pred HHHHHHH---------------HHHHHH------------------HhHHHH---------HcCCHHHHHHHHHHHHHcC
Q 005108 344 EVHRLQV---------------VEKHLS------------------KCTDAR---------KVGDWKSALREGDAAIAAG 381 (714)
Q Consensus 344 ~~~~l~~---------------~~~~~~------------------~a~~~~---------~~g~~~~Al~~~~~al~~~ 381 (714)
.+..... +...+. .+.... ..|++++|...|+++++ .
T Consensus 81 lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~-~ 159 (530)
T 2ooe_A 81 LWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV-N 159 (530)
T ss_dssp HHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT-S
T ss_pred HHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh-c
Confidence 2221110 001111 111111 15788889999999888 4
Q ss_pred CCCC-HHHHHHHHHHH-------------HHcCCHHHHHHHhhc------cccC-----CCCCCCc--h----h---h--
Q 005108 382 ADFS-PQLSMCRVEAL-------------LKLHQLEDAESSLSN------IPKI-----EPSTVSS--S----Q---T-- 425 (714)
Q Consensus 382 p~~~-~~~~~~la~~~-------------~~~g~~~~A~~~~~~------al~~-----~p~~~~~--~----~---~-- 425 (714)
|... ..++....... ...+++++|...+++ .++. .|..... . . .
T Consensus 160 P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~ 239 (530)
T 2ooe_A 160 PMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQW 239 (530)
T ss_dssp CCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHH
Confidence 6433 22332221111 122344455443332 2221 1110000 0 0 0
Q ss_pred ----------------h---hhh-----hhhhHHHHHHHHHHHHH-------hCcHH-------HHHHHHHHHhc-cCCC
Q 005108 426 ----------------R---FFG-----MLSEAYTFFVRAQIEMA-------LGRFE-------NAVTAAEKAGQ-IDPR 466 (714)
Q Consensus 426 ----------------~---~~~-----~~~~~~~~~~la~~~~~-------~g~~~-------~A~~~~~~al~-~~p~ 466 (714)
+ .+. .-....+|+.+|..+.. .|+++ +|+..|+++++ +.|+
T Consensus 240 e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~ 319 (530)
T 2ooe_A 240 EKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKK 319 (530)
T ss_dssp HHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSS
T ss_pred HHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcc
Confidence 0 000 00126688899998886 79987 99999999997 8999
Q ss_pred CHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Q 005108 467 NVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNS-VLYCNRAACWFKLGQWERSVEDSNQALLIQP 545 (714)
Q Consensus 467 ~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 545 (714)
+..+|..+ +..+...|++++|+..|++++++.|.++ .+|..++.++.+.|++++|++.|+++++..|
T Consensus 320 ~~~l~~~~------------~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~ 387 (530)
T 2ooe_A 320 NMLLYFAY------------ADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR 387 (530)
T ss_dssp CHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTT
T ss_pred cHHHHHHH------------HHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccC
Confidence 99999877 8889999999999999999999999985 6999999999999999999999999999999
Q ss_pred CCHHHHHHHHHH-HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 005108 546 NYTKALLRRAAS-NSKLEKWADAVRDFEVLRRELPDDNEIAESLFHAQVSL 595 (714)
Q Consensus 546 ~~~~~~~~la~~-~~~~g~~~eA~~~~~~al~~~p~~~~~~~~L~~~~~~l 595 (714)
.....+...+.+ +...|++++|...|+++++.+|+++.++..+......+
T Consensus 388 ~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~ 438 (530)
T 2ooe_A 388 TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHL 438 (530)
T ss_dssp CCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT
T ss_pred CchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhC
Confidence 887777777666 44689999999999999999999999988877765443
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.87 E-value=3e-21 Score=190.22 Aligned_cols=216 Identities=9% Similarity=0.070 Sum_probs=179.9
Q ss_pred HHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhh
Q 005108 352 EKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGML 431 (714)
Q Consensus 352 ~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 431 (714)
..++.+|..+...|++++|+..|+++++.+|......+..+|.++...|++++|+.+|+++++.+|.+
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~------------ 75 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNL------------ 75 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSH------------
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcch------------
Confidence 56778888999999999999999999999884455666679999999999999999999999999887
Q ss_pred hhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCC
Q 005108 432 SEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDP 511 (714)
Q Consensus 432 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p 511 (714)
..++..+|.++..+|++++|+..|+++++++|++...+..+ +..+..+|.++...|++++|+..|+++++++|
T Consensus 76 --~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~-----~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 148 (228)
T 4i17_A 76 --ANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLY-----AIYYLKEGQKFQQAGNIEKAEENYKHATDVTS 148 (228)
T ss_dssp --HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHH-----HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSC
T ss_pred --HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHH-----HHHHHHHhHHHHHhccHHHHHHHHHHHHhcCC
Confidence 77899999999999999999999999999999988765543 33466789999999999999999999999999
Q ss_pred C--CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 005108 512 S--NSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAESLF 589 (714)
Q Consensus 512 ~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~L~ 589 (714)
+ +..+++++|.+|..+| ...++++..+.+.+...+ .+......+.+++|+.+|+++++++|++.++...+.
T Consensus 149 ~~~~~~~~~~l~~~~~~~~-----~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~ 221 (228)
T 4i17_A 149 KKWKTDALYSLGVLFYNNG-----ADVLRKATPLASSNKEKY--ASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQD 221 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHH-----HHHHHHHGGGTTTCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHH-----HHHHHHHHhcccCCHHHH--HHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHH
Confidence 9 8899999999987655 445677777776665443 444566778899999999999999999999998887
Q ss_pred HHHH
Q 005108 590 HAQV 593 (714)
Q Consensus 590 ~~~~ 593 (714)
++..
T Consensus 222 ~i~~ 225 (228)
T 4i17_A 222 QVKA 225 (228)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 7654
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.1e-21 Score=211.94 Aligned_cols=302 Identities=15% Similarity=0.038 Sum_probs=214.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 005108 246 KRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRI---GEAVKECEEAVRLDPNYWRAHQRLGSLLVR 322 (714)
Q Consensus 246 ~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~p~~~~a~~~la~~~~~ 322 (714)
..+|..+++.|++++|+.+|+++.+. .++.+++.+|.+|...|++ ++|+.+|+++++. ++.+++.+|.++..
T Consensus 7 ~~la~~~~~~g~~~~A~~~~~~aa~~--g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 7 QRLANEALKRGDTVTAQQNYQQLAEL--GYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT---SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--TCCTGGGTCC-------------------------------CHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---CHHHHHHHHHHHHh
Confidence 34677888888888888888888765 4567778888888888877 7888888888765 66778888886666
Q ss_pred cC-----CHHHHHHHHHhhcCCCChHHHHHHHH--------------------------HHHHHHHhHHHHHcCCHHHHH
Q 005108 323 LG-----QVENARRHLCLSGQQADPTEVHRLQV--------------------------VEKHLSKCTDARKVGDWKSAL 371 (714)
Q Consensus 323 ~g-----~~~~A~~~~~~al~~~~~~~~~~l~~--------------------------~~~~~~~a~~~~~~g~~~~Al 371 (714)
.+ ++++|+.+|++++...++.....+.. ...++.++.++...+.+++++
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~ 161 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHL 161 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGH
T ss_pred CCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCH
Confidence 55 77888888888776444333222221 123455666777777554444
Q ss_pred H----HHHHHHHcCCCCCHHHHHHHHHHHHHcC---CHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHH
Q 005108 372 R----EGDAAIAAGADFSPQLSMCRVEALLKLH---QLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIE 444 (714)
Q Consensus 372 ~----~~~~al~~~p~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~ 444 (714)
. +++.+...+|. .+..+|.+|...| ++++|+.+|+++.+..+.. +..++.+|.+|
T Consensus 162 ~~a~~~~~~a~~~~~~----a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~--------------a~~~~~Lg~~y 223 (452)
T 3e4b_A 162 DDVERICKAALNTTDI----CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVT--------------AQRVDSVARVL 223 (452)
T ss_dssp HHHHHHHHHHTTTCTT----HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSC--------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHH----HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHH--------------HHHHHHHHHHH
Confidence 4 44444444433 6777999999999 9999999999999999988 77778999999
Q ss_pred HHh----CcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhH-H--hhCcCHHHHHHHHHHhhccCCCCHHHH
Q 005108 445 MAL----GRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGND-L--FKSERFTEACQAYGEGLRFDPSNSVLY 517 (714)
Q Consensus 445 ~~~----g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~-~--~~~g~~~~A~~~~~~al~~~p~~~~~~ 517 (714)
... +++++|+.+|+++. |.++.+++.+ |.+ + ...+++++|+.+|+++++. .++.++
T Consensus 224 ~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~L------------g~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~ 286 (452)
T 3e4b_A 224 GDATLGTPDEKTAQALLEKIA---PGYPASWVSL------------AQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAE 286 (452)
T ss_dssp TCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHH------------HHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHH
T ss_pred hCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHH------------HHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHH
Confidence 766 79999999999998 8888888776 777 4 5689999999999999875 489999
Q ss_pred HHHHHHHHHhC-----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hccHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005108 518 CNRAACWFKLG-----QWERSVEDSNQALLIQPNYTKALLRRAASNSK----LEKWADAVRDFEVLRRELPDDNEIAESL 588 (714)
Q Consensus 518 ~~la~~~~~~g-----~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~eA~~~~~~al~~~p~~~~~~~~L 588 (714)
+++|.+|. .| ++++|+.+|+++. +.++.+++++|.+|.. ..++++|+.+|+++.+. .++.....|
T Consensus 287 ~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~L 360 (452)
T 3e4b_A 287 LLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN--GQNSADFAI 360 (452)
T ss_dssp HHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT--TCTTHHHHH
T ss_pred HHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh--ChHHHHHHH
Confidence 99999998 66 9999999999998 8899999999999887 44999999999999874 556677777
Q ss_pred HHHHH
Q 005108 589 FHAQV 593 (714)
Q Consensus 589 ~~~~~ 593 (714)
..++.
T Consensus 361 g~~y~ 365 (452)
T 3e4b_A 361 AQLFS 365 (452)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76654
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.87 E-value=6.9e-21 Score=180.74 Aligned_cols=174 Identities=18% Similarity=0.135 Sum_probs=156.6
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 005108 240 GDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSL 319 (714)
Q Consensus 240 ~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~ 319 (714)
+++..|+.+|.++..+|+|++|+.+|+++++++|+++.++..+|.+|..+|++++|+..+++++..+|++..++..+|.+
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSA 82 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 005108 320 LVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKL 399 (714)
Q Consensus 320 ~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~ 399 (714)
+...++++.|+..+. +++...|. ....+..+|.+|..+
T Consensus 83 ~~~~~~~~~a~~~~~-----------------------------------------~a~~~~~~-~~~~~~~lg~~~~~~ 120 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQ-----------------------------------------RAIALNTV-YADAYYKLGLVYDSM 120 (184)
T ss_dssp HHHTTCHHHHHHHHH-----------------------------------------HHHHHCTT-CHHHHHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHH-----------------------------------------HHHHhCcc-chHHHHHHHHHHHHh
Confidence 988888887777664 44555665 355667799999999
Q ss_pred CCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHH
Q 005108 400 HQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVE 469 (714)
Q Consensus 400 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 469 (714)
|++++|++.|+++++++|.+ ..+|+.+|.+|..+|++++|+.+|+++++++|+++.
T Consensus 121 g~~~~A~~~~~~~l~~~p~~--------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~a~ 176 (184)
T 3vtx_A 121 GEHDKAIEAYEKTISIKPGF--------------IRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKAK 176 (184)
T ss_dssp TCHHHHHHHHHHHHHHCTTC--------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHHHH
T ss_pred CCchhHHHHHHHHHHhcchh--------------hhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccCHH
Confidence 99999999999999999998 889999999999999999999999999999987654
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.87 E-value=4.5e-21 Score=204.94 Aligned_cols=319 Identities=9% Similarity=-0.020 Sum_probs=240.5
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CCHHHH--HHH--HHHHHHCCCHHHHH-----------HHH
Q 005108 238 CGGDAEELKRMGNELYRKGCFGEALSMYDKAISLAP---RNAAFR--SNR--AAALTGLGRIGEAV-----------KEC 299 (714)
Q Consensus 238 ~p~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p---~~~~~~--~~l--a~~~~~~g~~~~A~-----------~~~ 299 (714)
.+.......+....+...+++++|..+++++.+.-+ .+...+ +.+ .......++++.+. +.+
T Consensus 8 ~~~~v~~~l~~w~~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~ 87 (383)
T 3ulq_A 8 SSSSIGEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLL 87 (383)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHH
Confidence 344556667777788899999999999999876432 244333 222 23333445555555 555
Q ss_pred HHHHhcCCCcHH------HHHHHHHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHH
Q 005108 300 EEAVRLDPNYWR------AHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALRE 373 (714)
Q Consensus 300 ~~al~~~p~~~~------a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~ 373 (714)
+++-. .+.... .++.+|.++...|++++|+.+|++++...... .........+..++.++...|++++|+.+
T Consensus 88 ~~i~~-~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~a~~~~~lg~~~~~~~~~~~A~~~ 165 (383)
T 3ulq_A 88 LEIDK-KQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFV-KDRIEKAEFFFKMSESYYYMKQTYFSMDY 165 (383)
T ss_dssp HHHHH-HTHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGC-CCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHh-cCCCchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhC-CCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 55432 333322 44559999999999999999999998731110 01123456788899999999999999999
Q ss_pred HHHHHHcCCCCC------HHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHh
Q 005108 374 GDAAIAAGADFS------PQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMAL 447 (714)
Q Consensus 374 ~~~al~~~p~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 447 (714)
++++++..+... ...+..+|.+|..+|++++|+.+|++++++.+... +....+.++..+|.+|..+
T Consensus 166 ~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~--------~~~~~~~~~~~lg~~y~~~ 237 (383)
T 3ulq_A 166 ARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEK--------QPQLMGRTLYNIGLCKNSQ 237 (383)
T ss_dssp HHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcC--------ChHHHHHHHHHHHHHHHHC
Confidence 999998855332 35677899999999999999999999998765431 1123366899999999999
Q ss_pred CcHHHHHHHHHHHhcc-----C-CCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccC-----CCCHHH
Q 005108 448 GRFENAVTAAEKAGQI-----D-PRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFD-----PSNSVL 516 (714)
Q Consensus 448 g~~~~A~~~~~~al~~-----~-p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~ 516 (714)
|++++|+.+|++++++ + |....++.. +|.++...|++++|+.+|++++++. +.....
T Consensus 238 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~------------l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 305 (383)
T 3ulq_A 238 SQYEDAIPYFKRAIAVFEESNILPSLPQAYFL------------ITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSE 305 (383)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHH------------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhhccchhHHHHHHH------------HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999983 4 555455544 4999999999999999999999873 333444
Q ss_pred HHHHHHHHHHhCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Q 005108 517 YCNRAACWFKLGQ---WERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELP 579 (714)
Q Consensus 517 ~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p 579 (714)
+..++.+|...|+ +++|+..+++. ...+....++..+|.+|..+|++++|+++|++++++..
T Consensus 306 ~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 306 FEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp HHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 6789999999999 88888888876 33444567889999999999999999999999988653
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.87 E-value=4.8e-20 Score=181.54 Aligned_cols=211 Identities=14% Similarity=0.147 Sum_probs=149.3
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 005108 239 GGDAEELKRMGNELYRKGCFGEALSMYDKAISLAP-RNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLG 317 (714)
Q Consensus 239 p~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la 317 (714)
+.++..++.+|..++..|+|++|+.+|+++++.+| .+..+++.+|.++..+|++++|+..|+++++.+|++..++..+|
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 83 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKS 83 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 45779999999999999999999999999999999 89999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCC------HHHHHH
Q 005108 318 SLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFS------PQLSMC 391 (714)
Q Consensus 318 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~------~~~~~~ 391 (714)
.+|..+|++++|+..|++++. .+|+.. ...+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~-----------------------------------------~~p~~~~~~~~~~~~~~~ 122 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIK-----------------------------------------AVPGNATIEKLYAIYYLK 122 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH-----------------------------------------HSTTCHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHH-----------------------------------------HCCCcHHHHHHHHHHHHH
Confidence 999999999998888866653 333321 123445
Q ss_pred HHHHHHHcCCHHHHHHHhhccccCCCC--CCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHH
Q 005108 392 RVEALLKLHQLEDAESSLSNIPKIEPS--TVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVE 469 (714)
Q Consensus 392 la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 469 (714)
+|.++...|++++|+..|+++++++|+ + ..+++.+|.++...| ...++++..+.+.+..
T Consensus 123 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~--------------~~~~~~l~~~~~~~~-----~~~~~~a~~~~~~~~~ 183 (228)
T 4i17_A 123 EGQKFQQAGNIEKAEENYKHATDVTSKKWK--------------TDALYSLGVLFYNNG-----ADVLRKATPLASSNKE 183 (228)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTSSCHHHH--------------HHHHHHHHHHHHHHH-----HHHHHHHGGGTTTCHH
T ss_pred HhHHHHHhccHHHHHHHHHHHHhcCCCccc--------------HHHHHHHHHHHHHHH-----HHHHHHHHhcccCCHH
Confidence 666666666777777777666666666 4 556666666665443 2334455555444433
Q ss_pred HHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHH
Q 005108 470 VAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAAC 523 (714)
Q Consensus 470 ~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 523 (714)
.+. +......+.+++|+.+|+++++++|++..++..++.+
T Consensus 184 ~~~--------------~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i 223 (228)
T 4i17_A 184 KYA--------------SEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQV 223 (228)
T ss_dssp HHH--------------HHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHH--------------HHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence 221 2222233344455555555555555544444444433
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.86 E-value=3.8e-20 Score=191.47 Aligned_cols=231 Identities=12% Similarity=-0.004 Sum_probs=201.4
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCC------
Q 005108 293 GEAVKECEEAVRLDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGD------ 366 (714)
Q Consensus 293 ~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~------ 366 (714)
++|+..|+++++.+|+++.+|+.+|..+...++. +...|+
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~----------------------------------l~~~g~~~~~~~ 78 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKL----------------------------------LAEKGDMNNAKL 78 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----------------------------------HHHTSCCHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchh----------------------------------hhhccchhhccc
Confidence 7899999999999999999999999998754321 112233
Q ss_pred -HHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHH-HHHHHHHH
Q 005108 367 -WKSALREGDAAIA-AGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAY-TFFVRAQI 443 (714)
Q Consensus 367 -~~~Al~~~~~al~-~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~-~~~~la~~ 443 (714)
+++|+..|+++++ ++|+ ...+|..++.++...|++++|...|+++++++|.+ .. +|..++.+
T Consensus 79 ~~~~A~~~~~rAl~~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~--------------~~~~~~~~~~~ 143 (308)
T 2ond_A 79 FSDEAANIYERAISTLLKK-NMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDID--------------PTLVYIQYMKF 143 (308)
T ss_dssp HHHHHHHHHHHHHTTTTTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSC--------------THHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccC--------------ccHHHHHHHHH
Confidence 4788888899998 5776 56778889999999999999999999999999987 43 89999999
Q ss_pred HHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHh-hCcCHHHHHHHHHHhhccCCCCHHHHHHHHH
Q 005108 444 EMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLF-KSERFTEACQAYGEGLRFDPSNSVLYCNRAA 522 (714)
Q Consensus 444 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 522 (714)
+...|++++|+..|+++++..|....++... +.... ..|++++|+.+|+++++.+|+++.+|..++.
T Consensus 144 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~------------a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~ 211 (308)
T 2ond_A 144 ARRAEGIKSGRMIFKKAREDARTRHHVYVTA------------ALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYID 211 (308)
T ss_dssp HHHHHCHHHHHHHHHHHHTSTTCCTHHHHHH------------HHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCCCCHHHHHHH------------HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 9999999999999999999999987776533 44433 3799999999999999999999999999999
Q ss_pred HHHHhCCHHHHHHHHHHHHHh---CCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHH
Q 005108 523 CWFKLGQWERSVEDSNQALLI---QPN-YTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEI 584 (714)
Q Consensus 523 ~~~~~g~~~~A~~~~~~al~~---~p~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~ 584 (714)
.+.++|++++|+..|+++++. .|+ ...+|..++..+...|++++|...++++++.+|++.+.
T Consensus 212 ~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~~~ 277 (308)
T 2ond_A 212 YLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYEG 277 (308)
T ss_dssp HHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTSS
T ss_pred HHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccccccc
Confidence 999999999999999999995 553 78899999999999999999999999999999986543
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.86 E-value=2.1e-20 Score=189.10 Aligned_cols=231 Identities=13% Similarity=0.012 Sum_probs=188.9
Q ss_pred HHHHCCCHHHHHHHHHHHHhcC----CCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHH
Q 005108 285 ALTGLGRIGEAVKECEEAVRLD----PNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTD 360 (714)
Q Consensus 285 ~~~~~g~~~~A~~~~~~al~~~----p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~ 360 (714)
.+...|++++|+..|+++++.. |.+..+++.+|.++...|++++|+..|
T Consensus 14 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~--------------------------- 66 (275)
T 1xnf_A 14 PLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDF--------------------------- 66 (275)
T ss_dssp CCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHH---------------------------
T ss_pred ccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHH---------------------------
Confidence 3344567777777777777763 344566666666666666666665555
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHH
Q 005108 361 ARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVR 440 (714)
Q Consensus 361 ~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~l 440 (714)
+++++.+|. ....+..+|.+|...|++++|+.+|+++++.+|.+ ..++..+
T Consensus 67 --------------~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~--------------~~~~~~l 117 (275)
T 1xnf_A 67 --------------SQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY--------------NYAHLNR 117 (275)
T ss_dssp --------------HHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--------------THHHHHH
T ss_pred --------------HHHHHcCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccc--------------cHHHHHH
Confidence 555666776 45677789999999999999999999999999998 7789999
Q ss_pred HHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHH
Q 005108 441 AQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNR 520 (714)
Q Consensus 441 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 520 (714)
|.++...|++++|+.+|+++++++|++......+ ..+...|++++|+..|++++...|.+...+. +
T Consensus 118 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~-------------~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~ 183 (275)
T 1xnf_A 118 GIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWL-------------YLAEQKLDEKQAKEVLKQHFEKSDKEQWGWN-I 183 (275)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH-------------HHHHHHHCHHHHHHHHHHHHHHSCCCSTHHH-H
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHH-------------HHHHHhcCHHHHHHHHHHHHhcCCcchHHHH-H
Confidence 9999999999999999999999999998655433 2346669999999999999999988866654 7
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHH
Q 005108 521 AACWFKLGQWERSVEDSNQALLIQPN----YTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIA 585 (714)
Q Consensus 521 a~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~ 585 (714)
+.++...+++++|+..++++++..|. +..+++.+|.+|..+|++++|+.+|+++++++|++....
T Consensus 184 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 252 (275)
T 1xnf_A 184 VEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEH 252 (275)
T ss_dssp HHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHHH
Confidence 88888999999999999999887664 368999999999999999999999999999999775433
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.6e-21 Score=201.00 Aligned_cols=255 Identities=14% Similarity=0.067 Sum_probs=174.3
Q ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---
Q 005108 237 ICGGDAEELKRMGNELYRKGCFGEALSMYDKAISL--------APRNAAFRSNRAAALTGLGRIGEAVKECEEAVRL--- 305 (714)
Q Consensus 237 ~~p~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--- 305 (714)
-+|..+..+..+|..++..|++++|+.+|++++++ .|....++..+|.+|...|++++|+.+|++++++
T Consensus 22 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 101 (311)
T 3nf1_A 22 EIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREK 101 (311)
T ss_dssp TSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 46778899999999999999999999999999995 5667889999999999999999999999999987
Q ss_pred -----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHc
Q 005108 306 -----DPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAA 380 (714)
Q Consensus 306 -----~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~ 380 (714)
.|....++..+|.+|...|++++|+.+|++++. .+++....
T Consensus 102 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~----------------------------------~~~~~~~~ 147 (311)
T 3nf1_A 102 TLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALE----------------------------------IREKVLGK 147 (311)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH----------------------------------HHHHHHCT
T ss_pred HhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH----------------------------------HHHHhcCC
Confidence 355678899999999999999999999877642 11111001
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHhhccccC--------CCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHH
Q 005108 381 GADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKI--------EPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFEN 452 (714)
Q Consensus 381 ~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 452 (714)
++......+..+|.++...|++++|+.+|+++++. .|. ...++..+|.++...|++++
T Consensus 148 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~--------------~~~~~~~la~~~~~~g~~~~ 213 (311)
T 3nf1_A 148 DHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPN--------------VAKTKNNLASCYLKQGKFKQ 213 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHH--------------HHHHHHHHHHHHHHHTCHHH
T ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHH--------------HHHHHHHHHHHHHHcCCHHH
Confidence 11112345666888888889999999888888876 222 26789999999999999999
Q ss_pred HHHHHHHHhccCCC---------CHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHH
Q 005108 453 AVTAAEKAGQIDPR---------NVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAAC 523 (714)
Q Consensus 453 A~~~~~~al~~~p~---------~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 523 (714)
|+.+|+++++..+. ....+... ..+...+..+...+.+.+|+..+++++...|....++..+|.+
T Consensus 214 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~ 287 (311)
T 3nf1_A 214 AETLYKEILTRAHEREFGSVDDENKPIWMHA------EEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGAL 287 (311)
T ss_dssp HHHHHHHHHHHHHHHHHC------CCHHHHH------HHHHHC-------CCSCCCC---------CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCcchHHHHHHH------HHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHH
Confidence 99999999975332 11111111 1112223344444555555555555555555555555556666
Q ss_pred HHHhCCHHHHHHHHHHHHHhCC
Q 005108 524 WFKLGQWERSVEDSNQALLIQP 545 (714)
Q Consensus 524 ~~~~g~~~~A~~~~~~al~~~p 545 (714)
|..+|++++|+++|++++++.|
T Consensus 288 ~~~~g~~~~A~~~~~~al~l~~ 309 (311)
T 3nf1_A 288 YRRQGKFEAAETLEEAAMRSRK 309 (311)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHC
T ss_pred HHHCCCHHHHHHHHHHHHHHhh
Confidence 6666666666666665555544
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=5.4e-21 Score=218.30 Aligned_cols=170 Identities=17% Similarity=0.185 Sum_probs=162.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccC
Q 005108 385 SPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQID 464 (714)
Q Consensus 385 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 464 (714)
....+.++|.+|.++|++++|+++|+++++++|++ ..+++++|.+|..+|++++|++.|+++++++
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~--------------~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~ 73 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEF--------------AAAHSNLASVLQQQGKLQEALMHYKEAIRIS 73 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC--------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 35677889999999999999999999999999998 8899999999999999999999999999999
Q ss_pred CCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Q 005108 465 PRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQ 544 (714)
Q Consensus 465 p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 544 (714)
|++..++..+ |.++..+|++++|+++|+++++++|++..+|+++|.+|.++|++++|++.|+++++++
T Consensus 74 P~~~~a~~nL------------g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~ 141 (723)
T 4gyw_A 74 PTFADAYSNM------------GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLK 141 (723)
T ss_dssp TTCHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999998876 9999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Q 005108 545 PNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPD 580 (714)
Q Consensus 545 p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~ 580 (714)
|++..++.++|.+|..+|++++|++.|++++++.|+
T Consensus 142 P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 142 PDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVAD 177 (723)
T ss_dssp SCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred CCChHHHhhhhhHHHhcccHHHHHHHHHHHHHhChh
Confidence 999999999999999999999999999999987553
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.85 E-value=3.4e-21 Score=207.53 Aligned_cols=275 Identities=15% Similarity=0.072 Sum_probs=209.3
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHH
Q 005108 275 NAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYW----RAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQV 350 (714)
Q Consensus 275 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~ 350 (714)
....++.+|.++...|++++|+..|+++++++|++. .++..+|.+|...|++++|+.+|++++..
T Consensus 47 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----------- 115 (411)
T 4a1s_A 47 MCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTL----------- 115 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----------
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-----------
Confidence 355677899999999999999999999999999986 58999999999999999999999877520
Q ss_pred HHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhh
Q 005108 351 VEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGM 430 (714)
Q Consensus 351 ~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 430 (714)
....++. ......+..+|.+|...|++++|+.+|++++++.+.. ...
T Consensus 116 ----------~~~~~~~---------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--------~~~ 162 (411)
T 4a1s_A 116 ----------AKSMNDR---------------LGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQL--------GDR 162 (411)
T ss_dssp ----------HHHTTCH---------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--------TCH
T ss_pred ----------HHHccCc---------------hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh--------hch
Confidence 0000110 0113345567888888888888888888877653221 011
Q ss_pred hhhHHHHHHHHHHHHHhCc-----------------HHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhC
Q 005108 431 LSEAYTFFVRAQIEMALGR-----------------FENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKS 493 (714)
Q Consensus 431 ~~~~~~~~~la~~~~~~g~-----------------~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~ 493 (714)
.....++..+|.++...|+ +++|+.++++++++.+..... ......+..+|.++...
T Consensus 163 ~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~------~~~~~~~~~la~~~~~~ 236 (411)
T 4a1s_A 163 LSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDR------GAQGRACGNLGNTYYLL 236 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCH------HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCH------HHHHHHHHHHHHHHHHc
Confidence 1236789999999999999 999999999988753211000 00112233559999999
Q ss_pred cCHHHHHHHHHHhhccCCCCH------HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHh
Q 005108 494 ERFTEACQAYGEGLRFDPSNS------VLYCNRAACWFKLGQWERSVEDSNQALLIQPNY------TKALLRRAASNSKL 561 (714)
Q Consensus 494 g~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~ 561 (714)
|++++|+.+|++++++.+... .++.++|.+|..+|++++|+.+|++++++.+.. ..++..+|.+|..+
T Consensus 237 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 316 (411)
T 4a1s_A 237 GDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLL 316 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Confidence 999999999999999866443 389999999999999999999999999987643 67899999999999
Q ss_pred ccHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhhhhc
Q 005108 562 EKWADAVRDFEVLRRELPDD------NEIAESLFHAQVSLKKSR 599 (714)
Q Consensus 562 g~~~eA~~~~~~al~~~p~~------~~~~~~L~~~~~~l~~~~ 599 (714)
|++++|+.+|++++++.+.. ..++..+..++..+++..
T Consensus 317 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 360 (411)
T 4a1s_A 317 HEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHE 360 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred CCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHH
Confidence 99999999999999886532 335566666666655443
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.2e-21 Score=199.92 Aligned_cols=252 Identities=15% Similarity=0.041 Sum_probs=185.8
Q ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCCCChH
Q 005108 272 APRNAAFRSNRAAALTGLGRIGEAVKECEEAVRL--------DPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPT 343 (714)
Q Consensus 272 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 343 (714)
+|....++..+|.++...|++++|+.+|++++++ .|....++..+|.+|...|++++|+.+|++++.
T Consensus 23 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~----- 97 (311)
T 3nf1_A 23 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALA----- 97 (311)
T ss_dssp SCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----
T ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-----
Confidence 4566889999999999999999999999999985 666788999999999999999999999877642
Q ss_pred HHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCC-----CC
Q 005108 344 EVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIE-----PS 418 (714)
Q Consensus 344 ~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----p~ 418 (714)
.+++....+.......+..+|.+|...|++++|+.+|++++++. +.
T Consensus 98 -----------------------------~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 148 (311)
T 3nf1_A 98 -----------------------------IREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKD 148 (311)
T ss_dssp -----------------------------HHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred -----------------------------HHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCC
Confidence 11111111111123456668888888888888888888887763 22
Q ss_pred CCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhcc--------CCCCHHHHHHHHhHHHHHHHHHHHhHH
Q 005108 419 TVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQI--------DPRNVEVAVLLNNVKLVARARARGNDL 490 (714)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~l~~~~~~~~~g~~~ 490 (714)
+ .....++..+|.++...|++++|+.+|++++++ .|....++. .+|.++
T Consensus 149 ~-----------~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~------------~la~~~ 205 (311)
T 3nf1_A 149 H-----------PDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKN------------NLASCY 205 (311)
T ss_dssp C-----------HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHH------------HHHHHH
T ss_pred C-----------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHH------------HHHHHH
Confidence 1 123678999999999999999999999999987 333333343 349999
Q ss_pred hhCcCHHHHHHHHHHhhccCC---------CC------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 005108 491 FKSERFTEACQAYGEGLRFDP---------SN------SVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRA 555 (714)
Q Consensus 491 ~~~g~~~~A~~~~~~al~~~p---------~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 555 (714)
...|++++|+.+|+++++..+ .. ...+..++..+...+.+.+|+..+++++...|....++..+|
T Consensus 206 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la 285 (311)
T 3nf1_A 206 LKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLG 285 (311)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHH
Confidence 999999999999999997532 22 344445556666777888888999999999999999999999
Q ss_pred HHHHHhccHHHHHHHHHHHHHhCCC
Q 005108 556 ASNSKLEKWADAVRDFEVLRRELPD 580 (714)
Q Consensus 556 ~~~~~~g~~~eA~~~~~~al~~~p~ 580 (714)
.+|..+|++++|+++|++++++.|+
T Consensus 286 ~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 286 ALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999998775
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.8e-20 Score=193.26 Aligned_cols=272 Identities=17% Similarity=0.094 Sum_probs=207.6
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHH
Q 005108 276 AAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNY----WRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVV 351 (714)
Q Consensus 276 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~ 351 (714)
...++..|.++...|++++|+..|+++++.+|++ ..++..+|.++...|++++|+.+|++++..
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~------------ 72 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTL------------ 72 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH------------
Confidence 3467788999999999999999999999999988 478889999999999999999999877520
Q ss_pred HHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhh
Q 005108 352 EKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGML 431 (714)
Q Consensus 352 ~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 431 (714)
....++. ......+..+|.+|...|++++|+.++++++++.+... ...
T Consensus 73 ---------~~~~~~~---------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--------~~~ 120 (338)
T 3ro2_A 73 ---------ARTIGDQ---------------LGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELN--------DKV 120 (338)
T ss_dssp ---------HHHHTCH---------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--------CHH
T ss_pred ---------hhccccc---------------HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhc--------Cch
Confidence 0000110 01133455688888888888888888888877655431 111
Q ss_pred hhHHHHHHHHHHHHHhCc--------------------HHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHh
Q 005108 432 SEAYTFFVRAQIEMALGR--------------------FENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLF 491 (714)
Q Consensus 432 ~~~~~~~~la~~~~~~g~--------------------~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~ 491 (714)
....++..+|.++...|+ +++|+.++++++.+.+..... ......+..+|.++.
T Consensus 121 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~------~~~~~~~~~l~~~~~ 194 (338)
T 3ro2_A 121 GEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDR------AAQGRAFGNLGNTHY 194 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCH------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCH------HHHHHHHHHHHHHHH
Confidence 236688999999999999 999999999988652211000 001122335699999
Q ss_pred hCcCHHHHHHHHHHhhccCCCC------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHH
Q 005108 492 KSERFTEACQAYGEGLRFDPSN------SVLYCNRAACWFKLGQWERSVEDSNQALLIQPNY------TKALLRRAASNS 559 (714)
Q Consensus 492 ~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~ 559 (714)
..|++++|+.+|++++++.+.. ..++..+|.++...|++++|+.++++++++.+.. ..++..+|.++.
T Consensus 195 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~ 274 (338)
T 3ro2_A 195 LLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYT 274 (338)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHH
Confidence 9999999999999999875433 3489999999999999999999999999876654 678899999999
Q ss_pred HhccHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhhh
Q 005108 560 KLEKWADAVRDFEVLRRELPDD------NEIAESLFHAQVSLKK 597 (714)
Q Consensus 560 ~~g~~~eA~~~~~~al~~~p~~------~~~~~~L~~~~~~l~~ 597 (714)
.+|++++|+.+|++++++.+.. ..+...+..++...++
T Consensus 275 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 318 (338)
T 3ro2_A 275 LLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGN 318 (338)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999886533 2345556666555544
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=2.7e-20 Score=212.53 Aligned_cols=174 Identities=22% Similarity=0.266 Sum_probs=157.9
Q ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 005108 237 ICGGDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRL 316 (714)
Q Consensus 237 ~~p~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l 316 (714)
.+|+++++++++|.+|.++|++++|+.+|+++++++|++..+|+++|.+|.++|++++|+..|+++++++|++..+|+++
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nL 83 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNM 83 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 005108 317 GSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEAL 396 (714)
Q Consensus 317 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~ 396 (714)
|.+|..+|++++|++.| +++++++|+ ....+.++|.+|
T Consensus 84 g~~l~~~g~~~~A~~~~-----------------------------------------~kAl~l~P~-~~~a~~~Lg~~~ 121 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCY-----------------------------------------TRAIQINPA-FADAHSNLASIH 121 (723)
T ss_dssp HHHHHHTTCHHHHHHHH-----------------------------------------HHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHH-----------------------------------------HHHHHhCCC-CHHHHHHHHHHH
Confidence 99999988888887766 455666776 456677899999
Q ss_pred HHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCC
Q 005108 397 LKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPR 466 (714)
Q Consensus 397 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 466 (714)
..+|++++|++.|+++++++|++ ..++..+|.++..+|++++|++.+++++++.|+
T Consensus 122 ~~~g~~~eAi~~~~~Al~l~P~~--------------~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 122 KDSGNIPEAIASYRTALKLKPDF--------------PDAYCNLAHCLQIVCDWTDYDERMKKLVSIVAD 177 (723)
T ss_dssp HHTTCHHHHHHHHHHHHHHCSCC--------------HHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCC--------------hHHHhhhhhHHHhcccHHHHHHHHHHHHHhChh
Confidence 99999999999999999999998 888999999999999999999999999876554
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.82 E-value=6e-19 Score=192.51 Aligned_cols=298 Identities=14% Similarity=0.031 Sum_probs=232.0
Q ss_pred cHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHH---HHHHHHHHhcCCCcHHH
Q 005108 241 DAEELKRMGNELYRKG-----CFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEA---VKECEEAVRLDPNYWRA 312 (714)
Q Consensus 241 ~~~~~~~~g~~~~~~g-----~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A---~~~~~~al~~~p~~~~a 312 (714)
++.+++.+|.+++..+ ++++|+.+|+++++.+ ++.+++.+|.+|...+..+++ ++.+.++.. +.+..+
T Consensus 68 ~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~--~g~~~a 143 (452)
T 3e4b_A 68 SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANG--EGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQA--AGYPEA 143 (452)
T ss_dssp ---CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTT--CSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHH--HTCTTH
T ss_pred CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH--CCCHHH
Confidence 7888899999777766 8889999999998854 445888999999887765444 444444433 345778
Q ss_pred HHHHHHHHHHcCCHHHHHHH----HHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcC---CHHHHHHHHHHHHHcCCCCC
Q 005108 313 HQRLGSLLVRLGQVENARRH----LCLSGQQADPTEVHRLQVVEKHLSKCTDARKVG---DWKSALREGDAAIAAGADFS 385 (714)
Q Consensus 313 ~~~la~~~~~~g~~~~A~~~----~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g---~~~~Al~~~~~al~~~p~~~ 385 (714)
++.+|.+|...+.+++++.. +..+.. .++. .++.++.++...| ++++|+..|+++.+.++..
T Consensus 144 ~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~-~~~~---------a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~- 212 (452)
T 3e4b_A 144 GLAQVLLYRTQGTYDQHLDDVERICKAALN-TTDI---------CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVT- 212 (452)
T ss_dssp HHHHHHHHHHHTCGGGGHHHHHHHHHHHTT-TCTT---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSC-
T ss_pred HHHHHHHHHcCCCcccCHHHHHHHHHHHHc-CCHH---------HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHH-
Confidence 99999999998855544444 444432 2332 3556677788899 9999999999999999874
Q ss_pred HHHHHHHHHHHHHc----CCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHH-H--HHhCcHHHHHHHHH
Q 005108 386 PQLSMCRVEALLKL----HQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQI-E--MALGRFENAVTAAE 458 (714)
Q Consensus 386 ~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~-~--~~~g~~~~A~~~~~ 458 (714)
...++.+|.+|... +++++|+.+|+++. |.+ ..+++.+|.+ + ...+++++|+.+|+
T Consensus 213 a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~--------------~~a~~~Lg~~~~~~~~~~d~~~A~~~~~ 275 (452)
T 3e4b_A 213 AQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGY--------------PASWVSLAQLLYDFPELGDVEQMMKYLD 275 (452)
T ss_dssp HHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGS--------------THHHHHHHHHHHHSGGGCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCC--------------HHHHHHHHHHHHhCCCCCCHHHHHHHHH
Confidence 45456699999766 79999999999998 666 6789999998 4 56899999999999
Q ss_pred HHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCc-----CHHHHHHHHHHhhccCCCCHHHHHHHHHHHHH----hCC
Q 005108 459 KAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSE-----RFTEACQAYGEGLRFDPSNSVLYCNRAACWFK----LGQ 529 (714)
Q Consensus 459 ~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g-----~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~ 529 (714)
++.+.. ++.+++.+ |.+|. .| ++++|+.+|+++. +.++.+++++|.+|.. ..+
T Consensus 276 ~Aa~~g--~~~A~~~L------------g~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d 337 (452)
T 3e4b_A 276 NGRAAD--QPRAELLL------------GKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVY 337 (452)
T ss_dssp HHHHTT--CHHHHHHH------------HHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCC
T ss_pred HHHHCC--CHHHHHHH------------HHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcC
Confidence 998654 77777766 88887 45 9999999999999 8899999999999987 449
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005108 530 WERSVEDSNQALLIQPNYTKALLRRAASNSK----LEKWADAVRDFEVLRRELPDDNEIAESLFHAQ 592 (714)
Q Consensus 530 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~eA~~~~~~al~~~p~~~~~~~~L~~~~ 592 (714)
+++|+.+|+++.+ ..++.+++++|.+|.. ..++++|+.+|+++.+.. ++.....+..+.
T Consensus 338 ~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g--~~~a~~~l~~l~ 400 (452)
T 3e4b_A 338 PQKALDHLLTAAR--NGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD--TPEANDLATQLE 400 (452)
T ss_dssp HHHHHHHHHHHHT--TTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC--CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--hChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHH
Confidence 9999999999986 4567899999999985 469999999999998865 455555555443
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.4e-18 Score=175.23 Aligned_cols=254 Identities=9% Similarity=0.000 Sum_probs=202.9
Q ss_pred HHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 005108 242 AEELKRMGNELYRKGCF-GEALSMYDKAISLAPRNAAFRSNRAAALTGLG--RIGEAVKECEEAVRLDPNYWRAHQRLGS 318 (714)
Q Consensus 242 ~~~~~~~g~~~~~~g~~-~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~a~~~la~ 318 (714)
-...+.......+.|++ ++|+.+++++|.++|++..+|+.++.++..++ ++++++..+++++..+|++..+|+..+.
T Consensus 32 y~~~~~~~~a~~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~ 111 (306)
T 3dra_A 32 YKQIMGLLLALMKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQL 111 (306)
T ss_dssp HHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHH
Confidence 34445555566677776 68999999999999999999999999999999 9999999999999999999999999998
Q ss_pred HHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 005108 319 LLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLK 398 (714)
Q Consensus 319 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~ 398 (714)
++.+... . ....+++++++..++++++.+|.+ ..+|..++.++..
T Consensus 112 iL~~~~~---------~-------------------------l~~~~~~~~EL~~~~~~l~~~pkn-y~aW~~R~~vl~~ 156 (306)
T 3dra_A 112 IIGQIME---------L-------------------------NNNDFDPYREFDILEAMLSSDPKN-HHVWSYRKWLVDT 156 (306)
T ss_dssp HHHHHHH---------H-------------------------TTTCCCTHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHH
T ss_pred HHHHHHH---------h-------------------------ccccCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHH
Confidence 8732100 0 000145667777778888888874 5666668999999
Q ss_pred cCCHH--HHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCc------HHHHHHHHHHHhccCCCCHHH
Q 005108 399 LHQLE--DAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGR------FENAVTAAEKAGQIDPRNVEV 470 (714)
Q Consensus 399 ~g~~~--~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~------~~~A~~~~~~al~~~p~~~~~ 470 (714)
.+.++ +++++++++++.+|.+ ..+|..++.++...++ ++++++++++++..+|++..+
T Consensus 157 l~~~~~~~EL~~~~~~i~~d~~N--------------~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~Sa 222 (306)
T 3dra_A 157 FDLHNDAKELSFVDKVIDTDLKN--------------NSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPST 222 (306)
T ss_dssp TTCTTCHHHHHHHHHHHHHCTTC--------------HHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHH
T ss_pred hcccChHHHHHHHHHHHHhCCCC--------------HHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccH
Confidence 99888 9999999999999998 7889999998888887 888888888888888888888
Q ss_pred HHHHHhHHHHHHHHHHHhHHhhCcCHHH-HHHHHHHhhccC---CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH-hCC
Q 005108 471 AVLLNNVKLVARARARGNDLFKSERFTE-ACQAYGEGLRFD---PSNSVLYCNRAACWFKLGQWERSVEDSNQALL-IQP 545 (714)
Q Consensus 471 ~~~l~~l~~~~~~~~~g~~~~~~g~~~~-A~~~~~~al~~~---p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~p 545 (714)
|..+ +.++.+.|+..+ ...+++++++++ +.++.++..++.+|.+.|+.++|+++|+.+.+ ++|
T Consensus 223 W~y~------------~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dp 290 (306)
T 3dra_A 223 WNYL------------LGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNP 290 (306)
T ss_dssp HHHH------------HHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCG
T ss_pred HHHH------------HHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccCh
Confidence 8766 666777776444 445677777665 77788888888888888888888888888886 788
Q ss_pred CCHHHHHHHHH
Q 005108 546 NYTKALLRRAA 556 (714)
Q Consensus 546 ~~~~~~~~la~ 556 (714)
-....|..++.
T Consensus 291 ir~~yW~~~~~ 301 (306)
T 3dra_A 291 IRSNFWDYQIS 301 (306)
T ss_dssp GGHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 87777766654
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.82 E-value=2.9e-19 Score=183.24 Aligned_cols=186 Identities=14% Similarity=0.097 Sum_probs=128.9
Q ss_pred HHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHh-CcHHHHHHHHHHHhccCCCCH
Q 005108 390 MCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMAL-GRFENAVTAAEKAGQIDPRNV 468 (714)
Q Consensus 390 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~~ 468 (714)
.++|.+|..+|++++|+.+|++++++.+... .....+.++..+|.+|... |++++|+.+|++++++.|...
T Consensus 81 ~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g--------~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~ 152 (292)
T 1qqe_A 81 VEAYKCFKSGGNSVNAVDSLENAIQIFTHRG--------QFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQ 152 (292)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCC
Confidence 3455555555555555555555555443320 0111255788899999996 999999999999998877542
Q ss_pred HHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHH-------HHHHHHHHHHHhCCHHHHHHHHHHHH
Q 005108 469 EVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSV-------LYCNRAACWFKLGQWERSVEDSNQAL 541 (714)
Q Consensus 469 ~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~-------~~~~la~~~~~~g~~~~A~~~~~~al 541 (714)
.... ....+..+|.++...|++++|+.+|++++++.|++.. +++++|.++..+|++++|+.+|++++
T Consensus 153 ~~~~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 226 (292)
T 1qqe_A 153 SVAL------SNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQ 226 (292)
T ss_dssp CHHH------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGG
T ss_pred ChHH------HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 1100 0111234599999999999999999999999887643 68899999999999999999999999
Q ss_pred HhCCCCHHH-----HHHHHHHHH--HhccHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 005108 542 LIQPNYTKA-----LLRRAASNS--KLEKWADAVRDFEVLRRELPDDNEIAESLF 589 (714)
Q Consensus 542 ~~~p~~~~~-----~~~la~~~~--~~g~~~eA~~~~~~al~~~p~~~~~~~~L~ 589 (714)
+++|++... +..++..+. ..+++++|+..|+++++++|.+..+...+.
T Consensus 227 ~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~~~~k 281 (292)
T 1qqe_A 227 SEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILNKIK 281 (292)
T ss_dssp CC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHHHHHH
T ss_pred hhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHHHHHH
Confidence 999987643 445566664 567899999999999888876654444433
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.5e-19 Score=193.06 Aligned_cols=250 Identities=10% Similarity=-0.024 Sum_probs=197.8
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhc---CC---CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHH
Q 005108 278 FRSNRAAALTGLGRIGEAVKECEEAVRL---DP---NYWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVV 351 (714)
Q Consensus 278 ~~~~la~~~~~~g~~~~A~~~~~~al~~---~p---~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~ 351 (714)
.++.+|.++...|++++|+..|++++++ .+ ....++..+|.+|..+|++++|+.++.+++..............
T Consensus 105 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 184 (383)
T 3ulq_A 105 FNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLL 184 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHH
Confidence 4556999999999999999999999987 22 34689999999999999999999999999871111111123345
Q ss_pred HHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhh
Q 005108 352 EKHLSKCTDARKVGDWKSALREGDAAIAAGADFS-----PQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTR 426 (714)
Q Consensus 352 ~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 426 (714)
..+..++.++...|++++|+..|+++++..+... ...+.++|.+|..+|++++|+.+|++++++.....
T Consensus 185 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~------ 258 (383)
T 3ulq_A 185 QCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESN------ 258 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT------
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc------
Confidence 6788899999999999999999999998854322 24677899999999999999999999998421110
Q ss_pred hhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCC--CHHHHHHHHhHHHHHHHHHHHhHHhhCcC---HHHHHH
Q 005108 427 FFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPR--NVEVAVLLNNVKLVARARARGNDLFKSER---FTEACQ 501 (714)
Q Consensus 427 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~l~~~~~~~~~g~~~~~~g~---~~~A~~ 501 (714)
.......++..+|.++..+|++++|+.++++++++.+. +...... +..+|.++...|+ +++|+.
T Consensus 259 --~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~---------~~~l~~~~~~~~~~~~~~~al~ 327 (383)
T 3ulq_A 259 --ILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSE---------FEFLKSLYLSGPDEEAIQGFFD 327 (383)
T ss_dssp --CGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH---------HHHHHHHHTSSCCHHHHHHHHH
T ss_pred --cchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH---------HHHHHHHHhCCCcHHHHHHHHH
Confidence 00012778999999999999999999999999987432 2222211 1235999999999 889999
Q ss_pred HHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Q 005108 502 AYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQP 545 (714)
Q Consensus 502 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 545 (714)
.+++. ...+....++..+|.+|..+|++++|+.+|++++++..
T Consensus 328 ~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 328 FLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp HHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 99887 44445577899999999999999999999999998643
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.82 E-value=3.6e-18 Score=181.46 Aligned_cols=285 Identities=14% Similarity=0.016 Sum_probs=216.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc------H
Q 005108 242 AEELKRMGNELYRKGCFGEALSMYDKAISLAPRNA-----AFRSNRAAALTGLGRIGEAVKECEEAVRLDPNY------W 310 (714)
Q Consensus 242 ~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~ 310 (714)
...+..+|..++..|++++|+.++++++...|.+. .++..+|.++...|++++|+..+++++++.+.. .
T Consensus 14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 93 (373)
T 1hz4_A 14 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYAL 93 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 36677889999999999999999999999877552 267788999999999999999999998875432 2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcC-C--CCCHH
Q 005108 311 RAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAG-A--DFSPQ 387 (714)
Q Consensus 311 ~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~-p--~~~~~ 387 (714)
.++..+|.++...|++++|+.+|++++. ... ... + .....
T Consensus 94 ~~~~~la~~~~~~G~~~~A~~~~~~al~----------------------------------~~~---~~~~~~~~~~~~ 136 (373)
T 1hz4_A 94 WSLIQQSEILFAQGFLQTAWETQEKAFQ----------------------------------LIN---EQHLEQLPMHEF 136 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH----------------------------------HHH---HTTCTTSTHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH----------------------------------HHH---HhccccCcHHHH
Confidence 3467788888888888888887766542 000 000 0 01233
Q ss_pred HHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCC-
Q 005108 388 LSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPR- 466 (714)
Q Consensus 388 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~- 466 (714)
.+..+|.++...|++++|+.++++++...+.... .....++..+|.++...|++++|+.++++++.+.+.
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---------~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~ 207 (373)
T 1hz4_A 137 LVRIRAQLLWAWARLDEAEASARSGIEVLSSYQP---------QQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNG 207 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCG---------GGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCc---------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc
Confidence 4556889999999999999999999887775411 012467889999999999999999999999876332
Q ss_pred -CHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCC----HHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 005108 467 -NVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSN----SVLYCNRAACWFKLGQWERSVEDSNQAL 541 (714)
Q Consensus 467 -~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al 541 (714)
....+.... ...++.++...|++++|..++++++...+.. ...+..++.++...|++++|+..+++++
T Consensus 208 ~~~~~~~~~~-------~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~ 280 (373)
T 1hz4_A 208 KYHSDWISNA-------NKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELN 280 (373)
T ss_dssp CCCHHHHHHH-------HHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CcchhHHHHH-------HHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 222221110 0123566889999999999999999887653 3457889999999999999999999998
Q ss_pred HhCCC------CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Q 005108 542 LIQPN------YTKALLRRAASNSKLEKWADAVRDFEVLRRELP 579 (714)
Q Consensus 542 ~~~p~------~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p 579 (714)
...+. ...++..++.++..+|++++|...|++++++.+
T Consensus 281 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~ 324 (373)
T 1hz4_A 281 ENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN 324 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc
Confidence 86432 235788999999999999999999999998754
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.82 E-value=9.2e-19 Score=165.10 Aligned_cols=171 Identities=15% Similarity=0.119 Sum_probs=162.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCC
Q 005108 386 PQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDP 465 (714)
Q Consensus 386 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 465 (714)
..++..+|.++...|++++|+..++++++.+|.+ ..++..+|.++...|++++|+.+++++++..|
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~ 73 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFD--------------VDVALHLGIAYVKTGAVDRGTELLERSLADAP 73 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCC--------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccC--------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 4566779999999999999999999999999988 78899999999999999999999999999999
Q ss_pred CCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Q 005108 466 RNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQP 545 (714)
Q Consensus 466 ~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 545 (714)
++..++..+ |.++...|++++|+.+|+++++..|.+..++..+|.++...|++++|+..++++++..|
T Consensus 74 ~~~~~~~~~------------a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~ 141 (186)
T 3as5_A 74 DNVKVATVL------------GLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRP 141 (186)
T ss_dssp TCHHHHHHH------------HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHH------------HHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCc
Confidence 999888766 99999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCH
Q 005108 546 NYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDN 582 (714)
Q Consensus 546 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~ 582 (714)
++..++..+|.++..+|++++|+.+|+++++++|++.
T Consensus 142 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~ 178 (186)
T 3as5_A 142 NEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGAS 178 (186)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCC
T ss_pred cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCch
Confidence 9999999999999999999999999999999988764
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.82 E-value=3.2e-19 Score=204.65 Aligned_cols=188 Identities=11% Similarity=0.014 Sum_probs=152.0
Q ss_pred CCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Q 005108 236 GICGGDAEELKRMGNELYRKGCFGEALSMYDKAI--------SLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDP 307 (714)
Q Consensus 236 ~~~p~~~~~~~~~g~~~~~~g~~~~Al~~~~~al--------~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 307 (714)
.++|+++..++..+ +..|++++|++.|++++ +.+|++..+++.+|.+|..+|++++|+..|+++++++|
T Consensus 388 ~~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p 464 (681)
T 2pzi_A 388 LVDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVG 464 (681)
T ss_dssp CCCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc
Confidence 46788888888777 78999999999999999 89999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHH
Q 005108 308 NYWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQ 387 (714)
Q Consensus 308 ~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~ 387 (714)
++..+|+.+|.+|..+|++++|+..| +++++++|++ ..
T Consensus 465 ~~~~a~~~lg~~~~~~g~~~~A~~~~-----------------------------------------~~al~l~P~~-~~ 502 (681)
T 2pzi_A 465 WRWRLVWYRAVAELLTGDYDSATKHF-----------------------------------------TEVLDTFPGE-LA 502 (681)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHH-----------------------------------------HHHHHHSTTC-SH
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHH-----------------------------------------HHHHHhCCCC-hH
Confidence 99999999999998888887777666 4555666764 34
Q ss_pred HHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCC
Q 005108 388 LSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRN 467 (714)
Q Consensus 388 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 467 (714)
.+.++|.+|..+|++++ +..|+++++++|++ ..+|+.+|.++..+|++++|+..|+++++++|++
T Consensus 503 ~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~--------------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~ 567 (681)
T 2pzi_A 503 PKLALAATAELAGNTDE-HKFYQTVWSTNDGV--------------ISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHF 567 (681)
T ss_dssp HHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTC--------------HHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTH
T ss_pred HHHHHHHHHHHcCChHH-HHHHHHHHHhCCch--------------HHHHHHHHHHHHHcCCHHHHHHHHHhhcccCccc
Confidence 45568888888888888 88888888888877 6677888888888888888888888888888877
Q ss_pred HHHHHHHHhHHHHHHHHHHHhHHhhCcC
Q 005108 468 VEVAVLLNNVKLVARARARGNDLFKSER 495 (714)
Q Consensus 468 ~~~~~~l~~l~~~~~~~~~g~~~~~~g~ 495 (714)
..++..+ |.++...++
T Consensus 568 ~~a~~~~------------~~~~~~~~~ 583 (681)
T 2pzi_A 568 TTARLTS------------AVTLLSGRS 583 (681)
T ss_dssp HHHHHHH------------HHHTC----
T ss_pred HHHHHHH------------HHHHHccCC
Confidence 7777655 666666444
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.82 E-value=9.4e-19 Score=186.56 Aligned_cols=307 Identities=10% Similarity=-0.046 Sum_probs=225.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHH----HCCCHHHHH---------HHHHHHHhcCCC-----
Q 005108 250 NELYRKGCFGEALSMYDKAISLAP---RNAAFRSNRAAALT----GLGRIGEAV---------KECEEAVRLDPN----- 308 (714)
Q Consensus 250 ~~~~~~g~~~~Al~~~~~al~~~p---~~~~~~~~la~~~~----~~g~~~~A~---------~~~~~al~~~p~----- 308 (714)
..+...+++++|..+++++..... .+....+......+ ..+.+..+. ..++++-.....
T Consensus 20 y~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~l 99 (378)
T 3q15_A 20 YKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQKKLTGLL 99 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHGGGHHHHHHH
T ss_pred HHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhccCCCCccHH
Confidence 344789999999999998866422 34444322222211 122222222 444443221111
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCC----
Q 005108 309 YWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADF---- 384 (714)
Q Consensus 309 ~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~---- 384 (714)
....++.+|..+...|++++|+.+|++++...... .........+..++.++...|++++|+.++++++...+..
T Consensus 100 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~ 178 (378)
T 3q15_A 100 KYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFV-SDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYS 178 (378)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGC-CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCH
T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhC-CChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCch
Confidence 12367789999999999999999999998732110 0113456778889999999999999999999999875431
Q ss_pred --CHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhc
Q 005108 385 --SPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQ 462 (714)
Q Consensus 385 --~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 462 (714)
....+..+|.+|..+|++++|+.+|++++++.+.. ......+.++..+|.+|..+|++++|+.+|++++.
T Consensus 179 ~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~--------~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~ 250 (378)
T 3q15_A 179 IRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDI--------QNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAK 250 (378)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 24466789999999999999999999999865432 11113467899999999999999999999999998
Q ss_pred -----cCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCC-----CCHHHHHHHHHHHHHhCC---
Q 005108 463 -----IDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDP-----SNSVLYCNRAACWFKLGQ--- 529 (714)
Q Consensus 463 -----~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~la~~~~~~g~--- 529 (714)
.+|....++.. +|.++...|++++|+.+|++++++.+ .....+..++.+|...++
T Consensus 251 ~~~~~~~~~~~~~~~~------------la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~ 318 (378)
T 3q15_A 251 VSREKVPDLLPKVLFG------------LSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERK 318 (378)
T ss_dssp HHHHHCGGGHHHHHHH------------HHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHH
T ss_pred HHHhhCChhHHHHHHH------------HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHH
Confidence 56655555544 49999999999999999999999743 335566778888988998
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Q 005108 530 WERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRREL 578 (714)
Q Consensus 530 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 578 (714)
+.+|+..+++. ...+....++..+|.+|..+|++++|+.+|++++++.
T Consensus 319 ~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 319 IHDLLSYFEKK-NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp HHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 88888888872 2334445788899999999999999999999998653
|
| >3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei} | Back alignment and structure |
|---|
Probab=99.81 E-value=4.2e-20 Score=156.86 Aligned_cols=101 Identities=28% Similarity=0.440 Sum_probs=92.6
Q ss_pred eeehhhhHHhhhccC--CCceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCcchhhhCCccccceEEEEeC
Q 005108 613 EEVSSLEQFRAAVSL--PGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAHAENVRIVPTFKIYKN 690 (714)
Q Consensus 613 ~~i~~~e~~~~~i~~--~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~ 690 (714)
..+.+.++|...+.. +.+++|+|||+||++|+.+.|.++++...++++.|++||+|+++++++.|+|+++||+++|++
T Consensus 3 ~~i~~~~~f~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~V~~~PT~~~~~~ 82 (105)
T 3zzx_A 3 YQVKDQEDFTKQLNEAGNKLVVIDFYATWCGPCKMIAPKLEELSQSMSDVVFLKVDVDECEDIAQDNQIACMPTFLFMKN 82 (105)
T ss_dssp EECCSHHHHHHHHHHTTTSEEEEEEECTTCHHHHHHHHHHHHHHHHCTTEEEEEEETTTCHHHHHHTTCCBSSEEEEEET
T ss_pred EEeCCHHHHHHHHHhcCCCEEEEEEECCCCCCccCCCcchhhhhhccCCeEEEEEecccCHHHHHHcCCCeecEEEEEEC
Confidence 346667788877743 568999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEcCCCHHHHHHHHhhhc
Q 005108 691 GSRMKEIVCPSRDMLEHSVRHYS 713 (714)
Q Consensus 691 G~~~~~~~g~~~~~l~~~~~~~~ 713 (714)
|+++.++.|.+.++|+++|+++.
T Consensus 83 G~~v~~~~G~~~~~l~~~i~k~K 105 (105)
T 3zzx_A 83 GQKLDSLSGANYDKLLELVEKNK 105 (105)
T ss_dssp TEEEEEEESCCHHHHHHHHHHHC
T ss_pred CEEEEEEeCcCHHHHHHHHHhcC
Confidence 99999999999999999999873
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.7e-18 Score=174.35 Aligned_cols=86 Identities=14% Similarity=0.088 Sum_probs=62.5
Q ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc---H
Q 005108 237 ICGGDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRN---AAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNY---W 310 (714)
Q Consensus 237 ~~p~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~ 310 (714)
+.+.++..++.+|..++..|+|++|+..|+++++.+|++ ..+++.+|.+|..+|++++|+..|+++++..|++ .
T Consensus 10 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 89 (261)
T 3qky_A 10 LRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVP 89 (261)
T ss_dssp -CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhH
Confidence 567777888888888888888888888888888877777 7777888888888888888888888888777644 3
Q ss_pred HHHHHHHHHHHH
Q 005108 311 RAHQRLGSLLVR 322 (714)
Q Consensus 311 ~a~~~la~~~~~ 322 (714)
.+++.+|.++..
T Consensus 90 ~a~~~lg~~~~~ 101 (261)
T 3qky_A 90 QAEYERAMCYYK 101 (261)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444444444433
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.81 E-value=3e-18 Score=172.51 Aligned_cols=194 Identities=16% Similarity=0.113 Sum_probs=165.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccC
Q 005108 385 SPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQID 464 (714)
Q Consensus 385 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 464 (714)
....++.+|..++..|++++|+..|+++++.+|.+. ....+++.+|.++..+|++++|+..|+++++..
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~-----------~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~ 82 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHE-----------WAADAQFYLARAYYQNKEYLLAASEYERFIQIY 82 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCST-----------THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCc-----------chHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHC
Confidence 566777799999999999999999999999999862 125689999999999999999999999999999
Q ss_pred CCCHHHHHHHHhHHHHHHHHHHHhHHhh--------CcCHHHHHHHHHHhhccCCCCHHHH-----------------HH
Q 005108 465 PRNVEVAVLLNNVKLVARARARGNDLFK--------SERFTEACQAYGEGLRFDPSNSVLY-----------------CN 519 (714)
Q Consensus 465 p~~~~~~~~l~~l~~~~~~~~~g~~~~~--------~g~~~~A~~~~~~al~~~p~~~~~~-----------------~~ 519 (714)
|+++.....+ ..+|.+++. .|++++|+..|+++++.+|++..++ +.
T Consensus 83 p~~~~~~~a~---------~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~ 153 (261)
T 3qky_A 83 QIDPRVPQAE---------YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYE 153 (261)
T ss_dssp TTCTTHHHHH---------HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCchhHHHH---------HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 8764322222 134999999 9999999999999999999986655 88
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHh----------ccHHHHHHHHHHHHHhCCCCHHHHH
Q 005108 520 RAACWFKLGQWERSVEDSNQALLIQPN---YTKALLRRAASNSKL----------EKWADAVRDFEVLRRELPDDNEIAE 586 (714)
Q Consensus 520 la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~----------g~~~eA~~~~~~al~~~p~~~~~~~ 586 (714)
+|.+|.++|++++|+..|+++++..|+ ...+++.+|.+|..+ |++++|+..|+++++.+|+++.+..
T Consensus 154 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 233 (261)
T 3qky_A 154 AARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRT 233 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHH
Confidence 999999999999999999999999998 568999999999987 9999999999999999999965544
Q ss_pred ---HHHHHHHHhhhh
Q 005108 587 ---SLFHAQVSLKKS 598 (714)
Q Consensus 587 ---~L~~~~~~l~~~ 598 (714)
.+..+...+++.
T Consensus 234 a~~~l~~~~~~~~~~ 248 (261)
T 3qky_A 234 AEELYTRARQRLTEL 248 (261)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 444555555443
|
| >2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii} | Back alignment and structure |
|---|
Probab=99.81 E-value=4.8e-20 Score=162.84 Aligned_cols=101 Identities=13% Similarity=0.179 Sum_probs=92.1
Q ss_pred eeeehhhhHHhhhc--cCCCceEEEeecCCCccccccchHHHHHHhhCCC-cEEEEEecccCcchhhhCCccccceEEEE
Q 005108 612 VEEVSSLEQFRAAV--SLPGVSVVHFKSASNLHCKQISPYVETLCGRYPS-INFLKVDIDESPGVAHAENVRIVPTFKIY 688 (714)
Q Consensus 612 ~~~i~~~e~~~~~i--~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~-~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~ 688 (714)
+..+.+.++|++.+ ...++++|+|||+||++|+++.|.|+++++++++ +.|++||+|+.++++..|+|+++|||++|
T Consensus 23 v~~l~t~~~f~~~v~~~~~k~VVVdF~A~WCgPCk~m~PvleelA~e~~~~v~f~kVDVDe~~e~a~~y~V~siPT~~fF 102 (160)
T 2av4_A 23 LQHLNSGWAVDQAIVNEDERLVCIRFGHDYDPDCMKMDELLYKVADDIKNFCVIYLVDITEVPDFNTMYELYDPVSVMFF 102 (160)
T ss_dssp CEECCSHHHHHHHHHHCSSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTCCTTTTTTTCCSSEEEEEE
T ss_pred hhccCCHHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHcCCCCCCEEEEE
Confidence 55677888898766 3578999999999999999999999999999976 99999999999999999999999999999
Q ss_pred eCCeEE--E-------EEcCC-C-HHHHHHHHhhh
Q 005108 689 KNGSRM--K-------EIVCP-S-RDMLEHSVRHY 712 (714)
Q Consensus 689 ~~G~~~--~-------~~~g~-~-~~~l~~~~~~~ 712 (714)
++|+.+ + +++|+ + +++|++.|+.+
T Consensus 103 k~G~~v~vd~Gtgd~~k~vGa~~~k~~l~~~ie~~ 137 (160)
T 2av4_A 103 YRNKHMMIDLGTGNNNKINWPMNNKQEFIDIVETI 137 (160)
T ss_dssp ETTEEEEEECSSSCCSCBCSCCCCHHHHHHHHHHH
T ss_pred ECCEEEEEecCCCCcCeEEeecCCHHHHHHHHHHH
Confidence 999998 5 89999 5 99999998864
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.80 E-value=2.4e-17 Score=190.97 Aligned_cols=302 Identities=12% Similarity=0.077 Sum_probs=212.1
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----C--HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHH
Q 005108 240 GDAEELKRMGNELYRKGCFGEALSMYDKAISLAPR----N--AAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAH 313 (714)
Q Consensus 240 ~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~----~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 313 (714)
.+++..-...+.|...|.+.+|+++|++++ ++|. + ......+..+....++..+.+..++..+ .
T Consensus 983 ~~PeeVs~~vKaf~~aglp~EaieLLEKiv-l~~s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~~d---------~ 1052 (1630)
T 1xi4_A 983 QDPEEVSVTVKAFMTADLPNELIELLEKIV-LDNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLDNYD---------A 1052 (1630)
T ss_pred cCHHHhHHHHHHHHhCCCHHHHHHHHHHHH-cCCCcccccHHHHHHHHHHHHHhChhhHHHHHHHhhhcc---------H
Confidence 466777778889999999999999999999 4454 2 2233333333333333333333333211 2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 005108 314 QRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRV 393 (714)
Q Consensus 314 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la 393 (714)
..+|.++..+|++++|...|+++....+. ....+...++|++|+++++++ ..+.+|..+|
T Consensus 1053 ~eIA~Iai~lglyEEAf~IYkKa~~~~~A--------------~~VLie~i~nldrAiE~Aerv------n~p~vWsqLA 1112 (1630)
T 1xi4_A 1053 PDIANIAISNELFEEAFAIFRKFDVNTSA--------------VQVLIEHIGNLDRAYEFAERC------NEPAVWSQLA 1112 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCHHHH--------------HHHHHHHHhhHHHHHHHHHhc------CCHHHHHHHH
Confidence 33788888888888888888886310000 011133667788888877765 2466777788
Q ss_pred HHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCC---H--
Q 005108 394 EALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRN---V-- 468 (714)
Q Consensus 394 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~-- 468 (714)
.++...|++++|+..|.++ ++ ...|..++.++.+.|++++|+++|+.+.+..++. .
T Consensus 1113 KAql~~G~~kEAIdsYiKA-----dD--------------~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~L 1173 (1630)
T 1xi4_A 1113 KAQLQKGMVKEAIDSYIKA-----DD--------------PSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETEL 1173 (1630)
T ss_pred HHHHhCCCHHHHHHHHHhc-----CC--------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHH
Confidence 8888888888888888775 33 4567778888888888888888888877766442 0
Q ss_pred -HHHHHHHhHHH---------HHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHH
Q 005108 469 -EVAVLLNNVKL---------VARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSN 538 (714)
Q Consensus 469 -~~~~~l~~l~~---------~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 538 (714)
..+..+..+.. ...+...|..++..|+|++|+.+|.++ ..|..++.+|.++|++++|++.++
T Consensus 1174 afaYAKl~rleele~fI~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaar 1245 (1630)
T 1xi4_A 1174 IFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGAR 1245 (1630)
T ss_pred HHHHHhhcCHHHHHHHHhCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHH
Confidence 11111111111 123456799999999999999999986 478999999999999999999999
Q ss_pred HHHHhCC-------------------------CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005108 539 QALLIQP-------------------------NYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAESLFHAQV 593 (714)
Q Consensus 539 ~al~~~p-------------------------~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~L~~~~~ 593 (714)
++....+ .+++.+..++..|.+.|.|++|+.++++++.+++.+..+...|..++.
T Consensus 1246 KA~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLya 1325 (1630)
T 1xi4_A 1246 KANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYS 1325 (1630)
T ss_pred HhCCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHH
Confidence 8854332 234556678888999999999999999999999999999888887765
Q ss_pred Hhhhh
Q 005108 594 SLKKS 598 (714)
Q Consensus 594 ~l~~~ 598 (714)
..+..
T Consensus 1326 Ky~pe 1330 (1630)
T 1xi4_A 1326 KFKPQ 1330 (1630)
T ss_pred hCCHH
Confidence 55433
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.80 E-value=2.1e-19 Score=206.18 Aligned_cols=216 Identities=16% Similarity=0.095 Sum_probs=181.4
Q ss_pred HHcCCHHHHHHHHHHHH--------HcCCCCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhh
Q 005108 362 RKVGDWKSALREGDAAI--------AAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSE 433 (714)
Q Consensus 362 ~~~g~~~~Al~~~~~al--------~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 433 (714)
...+++++|++.|++++ +.+|+.. ..+..+|.+|..+|++++|+..|+++++.+|++
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~-~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~-------------- 466 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESV-ELPLMEVRALLDLGDVAKATRKLDDLAERVGWR-------------- 466 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCS-HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCC--------------
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccch-hHHHHHHHHHHhcCCHHHHHHHHHHHhccCcch--------------
Confidence 67899999999999999 8888754 556679999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCC
Q 005108 434 AYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSN 513 (714)
Q Consensus 434 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~ 513 (714)
..+|+.+|.++..+|++++|++.|+++++++|++..++..+ |.++...|++++ +.+|+++++++|++
T Consensus 467 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~l------------g~~~~~~g~~~~-~~~~~~al~~~P~~ 533 (681)
T 2pzi_A 467 WRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLAL------------AATAELAGNTDE-HKFYQTVWSTNDGV 533 (681)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHH------------HHHHHHHTCCCT-TCHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHH------------HHHHHHcCChHH-HHHHHHHHHhCCch
Confidence 88999999999999999999999999999999999998876 999999999999 99999999999999
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcc--------HHHHHHHHHHHHHhCCCCHHHH
Q 005108 514 SVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEK--------WADAVRDFEVLRRELPDDNEIA 585 (714)
Q Consensus 514 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~--------~~eA~~~~~~al~~~p~~~~~~ 585 (714)
..+|+++|.+|.++|++++|++.|+++++++|++..+++++|.++...++ +++|.+.++++....|....+.
T Consensus 534 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~~~~l~ 613 (681)
T 2pzi_A 534 ISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPRVLQIR 613 (681)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTTHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHHHHHHH
Confidence 99999999999999999999999999999999999999999999977555 4555544444333334444445
Q ss_pred HHHHHHHHHhhhhccccccc
Q 005108 586 ESLFHAQVSLKKSRGEEVYN 605 (714)
Q Consensus 586 ~~L~~~~~~l~~~~~~~~~~ 605 (714)
..+......+......++++
T Consensus 614 ~~ll~~~l~~~~~~~~~~~~ 633 (681)
T 2pzi_A 614 ALVLGGALDWLKDNKASTNH 633 (681)
T ss_dssp HHHHHHHHHHHTSCCCSSSE
T ss_pred HHHHHHHHHHHHccCCCCcc
Confidence 55555444555555555443
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=1.1e-19 Score=166.43 Aligned_cols=143 Identities=7% Similarity=0.008 Sum_probs=129.7
Q ss_pred HHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHH
Q 005108 439 VRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYC 518 (714)
Q Consensus 439 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 518 (714)
.||.++...|++++|++.+++++..+|+++..++.+ |.+|++.|+|++|+++|+++++++|+++.+|+
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~l------------a~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~ 69 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYF------------AKLYYEAKEYDLAKKYICTYINVQERDPKAHR 69 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHH------------HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HhHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 367888899999999999999999999888887766 99999999999999999999999999999999
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHH-HHHHHHhCCCCHHHHHHHHHHHH
Q 005108 519 NRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRD-FEVLRRELPDDNEIAESLFHAQV 593 (714)
Q Consensus 519 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~-~~~al~~~p~~~~~~~~L~~~~~ 593 (714)
++|.+|..+|++++|+..|+++++++|+++.+++.+|.+|.++|++++|.+. ++++++++|+++.++..+.++..
T Consensus 70 ~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~ 145 (150)
T 4ga2_A 70 FLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLD 145 (150)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999887776 59999999999999887766544
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.2e-17 Score=170.10 Aligned_cols=231 Identities=11% Similarity=-0.005 Sum_probs=202.7
Q ss_pred CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC--CHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHH
Q 005108 291 RIGEAVKECEEAVRLDPNYWRAHQRLGSLLVRLG--QVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWK 368 (714)
Q Consensus 291 ~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~ 368 (714)
..++|+..++++|.++|++..+|+..+.++..++ ++++
T Consensus 48 ~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~e---------------------------------------- 87 (306)
T 3dra_A 48 YSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYD---------------------------------------- 87 (306)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHH----------------------------------------
T ss_pred CCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHH----------------------------------------
Confidence 3468999999999999999999999999988777 4444
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHH----HHc---CCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHH
Q 005108 369 SALREGDAAIAAGADFSPQLSMCRVEAL----LKL---HQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRA 441 (714)
Q Consensus 369 ~Al~~~~~al~~~p~~~~~~~~~la~~~----~~~---g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la 441 (714)
++..+++++..+|.+.. +|..++.++ ... +++++++.++.++++.+|.+ ..+|..++
T Consensus 88 -eL~~~~~~L~~nPk~y~-aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkn--------------y~aW~~R~ 151 (306)
T 3dra_A 88 -ELDWCEEIALDNEKNYQ-IWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKN--------------HHVWSYRK 151 (306)
T ss_dssp -HHHHHHHHHHHCTTCCH-HHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTC--------------HHHHHHHH
T ss_pred -HHHHHHHHHHHCcccHH-HHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCC--------------HHHHHHHH
Confidence 45555677788888554 445577777 666 78999999999999999999 89999999
Q ss_pred HHHHHhCcHH--HHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcC------HHHHHHHHHHhhccCCCC
Q 005108 442 QIEMALGRFE--NAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSER------FTEACQAYGEGLRFDPSN 513 (714)
Q Consensus 442 ~~~~~~g~~~--~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~------~~~A~~~~~~al~~~p~~ 513 (714)
.++...++++ +++++++++++.+|.|..+|... +.++...++ ++++++++++++..+|.|
T Consensus 152 ~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R------------~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n 219 (306)
T 3dra_A 152 WLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHR------------FFLLFSKKHLATDNTIDEELNYVKDKIVKCPQN 219 (306)
T ss_dssp HHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHH------------HHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHH------------HHHHHhccccchhhhHHHHHHHHHHHHHhCCCC
Confidence 9999999998 99999999999999999999865 888888887 999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCHHH-HHHHHHHHHHhC---CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH-hCCCCHHHHHHH
Q 005108 514 SVLYCNRAACWFKLGQWER-SVEDSNQALLIQ---PNYTKALLRRAASNSKLEKWADAVRDFEVLRR-ELPDDNEIAESL 588 (714)
Q Consensus 514 ~~~~~~la~~~~~~g~~~~-A~~~~~~al~~~---p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~-~~p~~~~~~~~L 588 (714)
..+|+.++.++.+.|+..+ ....++++++++ |.+..++..++.+|.+.|+.++|+++|+.+.+ .+|-....+...
T Consensus 220 ~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~ 299 (306)
T 3dra_A 220 PSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQ 299 (306)
T ss_dssp HHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred ccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHHHHHHHHH
Confidence 9999999999999998555 556778887776 88999999999999999999999999999997 899988887755
Q ss_pred H
Q 005108 589 F 589 (714)
Q Consensus 589 ~ 589 (714)
.
T Consensus 300 ~ 300 (306)
T 3dra_A 300 I 300 (306)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.79 E-value=1e-18 Score=169.46 Aligned_cols=141 Identities=13% Similarity=0.045 Sum_probs=120.3
Q ss_pred HHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHH
Q 005108 437 FFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVL 516 (714)
Q Consensus 437 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 516 (714)
.+.+|.++...|++++|+..|+++++++|++..++..+ |.++...|++++|+.+|+++++++|+++.+
T Consensus 57 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l------------g~~~~~~g~~~~A~~~~~~al~~~P~~~~a 124 (208)
T 3urz_A 57 ATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEAC------------AEMQVCRGQEKDALRMYEKILQLEADNLAA 124 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH------------HHHHHHHTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Confidence 34499999999999999999999999999999998876 999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005108 517 YCNRAACWFKLGQ--WERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAESLFHA 591 (714)
Q Consensus 517 ~~~la~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~L~~~ 591 (714)
|+++|.+|...|+ .+.+...|++++...|. ..+++.+|.++..+|++++|+.+|+++++++|+. +....|.++
T Consensus 125 ~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~-~~~~~l~~i 199 (208)
T 3urz_A 125 NIFLGNYYYLTAEQEKKKLETDYKKLSSPTKM-QYARYRDGLSKLFTTRYEKARNSLQKVILRFPST-EAQKTLDKI 199 (208)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC---CCCHH-HHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH-HHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHhCCCch-hHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH-HHHHHHHHH
Confidence 9999999987764 55677888887654332 3578889999999999999999999999999974 455555554
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.79 E-value=4.9e-17 Score=188.35 Aligned_cols=269 Identities=16% Similarity=0.076 Sum_probs=182.6
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 005108 254 RKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVRLGQVENARRHL 333 (714)
Q Consensus 254 ~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~ 333 (714)
..+++++|+++++++ +.+.+|+.+|.++...|++++|+..|.++ ++...|..++.++.+.|+|++|+++|
T Consensus 1088 ~i~nldrAiE~Aerv-----n~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL 1157 (1630)
T 1xi4_A 1088 HIGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYL 1157 (1630)
T ss_pred HHhhHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHH
Confidence 667777777777755 55778888888888888888888888765 66777888888888888888888888
Q ss_pred HhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHhhccc
Q 005108 334 CLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIP 413 (714)
Q Consensus 334 ~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 413 (714)
..+.+....... ...++.+|.+.+++++ ++.|. ..+. . .-+..+|..+...|+|++|+.+|.++
T Consensus 1158 ~mArk~~~e~~I--------dt~LafaYAKl~rlee-le~fI----~~~n-~-ad~~~iGd~le~eg~YeeA~~~Y~kA- 1221 (1630)
T 1xi4_A 1158 QMARKKARESYV--------ETELIFALAKTNRLAE-LEEFI----NGPN-N-AHIQQVGDRCYDEKMYDAAKLLYNNV- 1221 (1630)
T ss_pred HHHHhhcccccc--------cHHHHHHHHhhcCHHH-HHHHH----hCCC-H-HHHHHHHHHHHhcCCHHHHHHHHHhh-
Confidence 777652211110 0113444555566553 33331 1121 2 23334666677777777777666664
Q ss_pred cCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhH----------------
Q 005108 414 KIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNV---------------- 477 (714)
Q Consensus 414 ~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l---------------- 477 (714)
. .|..++.+|.++|++++|++.++++.. ..+|......
T Consensus 1222 ----~-----------------ny~rLA~tLvkLge~q~AIEaarKA~n-----~~aWkev~~acve~~Ef~LA~~cgl~ 1275 (1630)
T 1xi4_A 1222 ----S-----------------NFGRLASTLVHLGEYQAAVDGARKANS-----TRTWKEVCFACVDGKEFRLAQMCGLH 1275 (1630)
T ss_pred ----h-----------------HHHHHHHHHHHhCCHHHHHHHHHHhCC-----HHHHHHHHHHHhhhhHHHHHHHHHHh
Confidence 1 366666666666677777776666632 2333211100
Q ss_pred --HHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHH--hCCHHHHHHHHHHHHHhCC-----CCH
Q 005108 478 --KLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFK--LGQWERSVEDSNQALLIQP-----NYT 548 (714)
Q Consensus 478 --~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~p-----~~~ 548 (714)
...+.+..++..|...|.|++|+.+|++++.+++.+...+..+|.+|.+ -++..++++.|...+.+.+ ++.
T Consensus 1276 Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~ 1355 (1630)
T 1xi4_A 1276 IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQA 1355 (1630)
T ss_pred hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHH
Confidence 0112334558889999999999999999999999999999888887765 5678889999998888777 678
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHH
Q 005108 549 KALLRRAASNSKLEKWADAVRDFEVL 574 (714)
Q Consensus 549 ~~~~~la~~~~~~g~~~eA~~~~~~a 574 (714)
..|..+..+|.+-|+|+.|+..+-+.
T Consensus 1356 ~lW~elv~LY~~~~e~dnA~~tm~~h 1381 (1630)
T 1xi4_A 1356 HLWAELVFLYDKYEEYDNAIITMMNH 1381 (1630)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHhc
Confidence 88999999999999999999544443
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.7e-18 Score=184.54 Aligned_cols=244 Identities=11% Similarity=-0.006 Sum_probs=196.2
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHH
Q 005108 277 AFRSNRAAALTGLGRIGEAVKECEEAVRLDP------NYWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQV 350 (714)
Q Consensus 277 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~ 350 (714)
.+++.+|..+...|++++|+..|++++++.+ ....++..+|.+|..+|++++|+.++++++.............
T Consensus 102 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 181 (378)
T 3q15_A 102 YSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRT 181 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHH
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhH
Confidence 3677889999999999999999999998732 3477999999999999999999999999986211110011234
Q ss_pred HHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCC-----CCCHHHHHHHHHHHHHcCCHHHHHHHhhcccc-----CCCCCC
Q 005108 351 VEKHLSKCTDARKVGDWKSALREGDAAIAAGA-----DFSPQLSMCRVEALLKLHQLEDAESSLSNIPK-----IEPSTV 420 (714)
Q Consensus 351 ~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p-----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-----~~p~~~ 420 (714)
...+..+|.++...|++++|+.+|+++++..+ ......+.++|.+|..+|++++|+.+|+++++ .+|..
T Consensus 182 ~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~- 260 (378)
T 3q15_A 182 IQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLL- 260 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGH-
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhH-
Confidence 56788899999999999999999999998733 22345677899999999999999999999998 55543
Q ss_pred CchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCC--CHHHHHHHHhHHHHHHHHHHHhHHhhCcC---
Q 005108 421 SSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPR--NVEVAVLLNNVKLVARARARGNDLFKSER--- 495 (714)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~l~~~~~~~~~g~~~~~~g~--- 495 (714)
..++..+|.++..+|++++|+.++++++++.+. +......+ ..++.++...++
T Consensus 261 -------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~---------~~l~~ly~~~~~~~~ 318 (378)
T 3q15_A 261 -------------PKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELF---------LFLQAVYKETVDERK 318 (378)
T ss_dssp -------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHH---------HHHHHHHSSSCCHHH
T ss_pred -------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH---------HHHHHHHhCCCcHHH
Confidence 778999999999999999999999999987543 22111111 124788888888
Q ss_pred HHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Q 005108 496 FTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQ 544 (714)
Q Consensus 496 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 544 (714)
+.+|+.++++. ...+....++..+|.+|...|++++|+.+|++++++.
T Consensus 319 ~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 319 IHDLLSYFEKK-NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp HHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 88999998873 3344456788899999999999999999999998753
|
| >2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.4e-19 Score=157.82 Aligned_cols=94 Identities=11% Similarity=0.202 Sum_probs=86.6
Q ss_pred hHHhhhccCCC-ceEEEeecCCC--ccccccchHHHHHHhhCC-CcEEEEEecccCcchhhhCCccccceEEEEeCCeEE
Q 005108 619 EQFRAAVSLPG-VSVVHFKSASN--LHCKQISPYVETLCGRYP-SINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRM 694 (714)
Q Consensus 619 e~~~~~i~~~~-~~vv~f~a~~c--~~C~~~~p~l~~l~~~~~-~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~ 694 (714)
++|...+...+ +++|+||++|| ++|+++.|.|+++..+|. .+.|++||+|++++++.+|+|++|||+++||||+.+
T Consensus 23 ~~F~~~v~~~~~~vlVdF~A~wCr~gpCk~iaPvleela~e~~~~v~~~KVdvDe~~~la~~ygV~siPTlilFkdG~~v 102 (137)
T 2qsi_A 23 ATVDDFIAHSGKIVVLFFRGDAVRFPEAADLAVVLPELINAFPGRLVAAEVAAEAERGLMARFGVAVCPSLAVVQPERTL 102 (137)
T ss_dssp TTHHHHHHTSSSEEEEEECCCTTTCTTHHHHHHHHHHHHHTSTTTEEEEEECGGGHHHHHHHHTCCSSSEEEEEECCEEE
T ss_pred hHHHHHHhcCCCcEEEEEeCCccCCCchhhHHhHHHHHHHHccCCcEEEEEECCCCHHHHHHcCCccCCEEEEEECCEEE
Confidence 56766665554 99999999999 999999999999999996 599999999999999999999999999999999999
Q ss_pred EEEcCC-CHHHHHHHHhhh
Q 005108 695 KEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 695 ~~~~g~-~~~~l~~~~~~~ 712 (714)
.+++|+ +.++|+++|+++
T Consensus 103 ~~~vG~~~k~~l~~~l~~~ 121 (137)
T 2qsi_A 103 GVIAKIQDWSSYLAQIGAM 121 (137)
T ss_dssp EEEESCCCHHHHHHHHHHH
T ss_pred EEEeCCCCHHHHHHHHHHH
Confidence 999999 999999999865
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=2.6e-19 Score=163.81 Aligned_cols=146 Identities=12% Similarity=0.018 Sum_probs=134.7
Q ss_pred HHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHH
Q 005108 392 RVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVA 471 (714)
Q Consensus 392 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 471 (714)
+|.++...|++++|+..+++++..+|++ ...++.+|.+|+..|++++|+++|+++++++|++..+|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~--------------~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~ 68 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQK--------------SIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAH 68 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHH--------------HTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCccc--------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 6888889999999999999999998887 67889999999999999999999999999999999999
Q ss_pred HHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHH-HHHHHHhCCCCHHH
Q 005108 472 VLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVED-SNQALLIQPNYTKA 550 (714)
Q Consensus 472 ~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~-~~~al~~~p~~~~~ 550 (714)
..+ |.++...|++++|+.+|+++++++|+++.+++++|.+|.++|++++|.+. ++++++++|+++.+
T Consensus 69 ~~l------------g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~ 136 (150)
T 4ga2_A 69 RFL------------GLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAV 136 (150)
T ss_dssp HHH------------HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHH
T ss_pred HHH------------HHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHH
Confidence 877 99999999999999999999999999999999999999999999887776 59999999999999
Q ss_pred HHHHHHHHHHhcc
Q 005108 551 LLRRAASNSKLEK 563 (714)
Q Consensus 551 ~~~la~~~~~~g~ 563 (714)
+..++.++...|+
T Consensus 137 ~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 137 YKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHTCCC
T ss_pred HHHHHHHHHHhCc
Confidence 9999999988875
|
| >2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Shigella flexneri 2A} PDB: 2hfd_A | Back alignment and structure |
|---|
Probab=99.78 E-value=2.3e-19 Score=157.11 Aligned_cols=95 Identities=12% Similarity=0.105 Sum_probs=87.9
Q ss_pred hhHHhhhccCCCceEEEeecCC--CccccccchHHHHHHhhCC-C-cEEEEEecccCcchhhhCCccccceEEEEeCCeE
Q 005108 618 LEQFRAAVSLPGVSVVHFKSAS--NLHCKQISPYVETLCGRYP-S-INFLKVDIDESPGVAHAENVRIVPTFKIYKNGSR 693 (714)
Q Consensus 618 ~e~~~~~i~~~~~~vv~f~a~~--c~~C~~~~p~l~~l~~~~~-~-~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~ 693 (714)
.+.|...+...++++|+||++| |++|+++.|.|+++..+|+ . +.|++||+|++++++.+|+|++|||+++||||+.
T Consensus 24 ~~~F~~~v~~~~~vlVdF~a~~crCgpCk~iaPvleela~e~~g~~v~~~KVdvDe~~~lA~~ygV~sIPTlilFk~G~~ 103 (140)
T 2qgv_A 24 ESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLHEFPDYTWQVAIADLEQSEAIGDRFGAFRFPATLVFTGGNY 103 (140)
T ss_dssp HHHHHHHHHTCSSEEEEECCCTTTCTTTTHHHHHHHHHHTTCTTSCCEEEECCHHHHHHHHHHHTCCSSSEEEEEETTEE
T ss_pred HHHHHHHHhCCCCEEEEEeCCcccCCcHHHHHhHHHHHHHHcCCCeEEEEEEECCCCHHHHHHcCCccCCEEEEEECCEE
Confidence 3677777766778999999999 9999999999999999996 4 8999999999999999999999999999999999
Q ss_pred EEEEcCC-CHHHHHHHHhhh
Q 005108 694 MKEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 694 ~~~~~g~-~~~~l~~~~~~~ 712 (714)
+.+++|. +.++|+++|+++
T Consensus 104 v~~~~G~~~k~~l~~~i~~~ 123 (140)
T 2qgv_A 104 RGVLNGIHPWAELINLMRGL 123 (140)
T ss_dssp EEEEESCCCHHHHHHHHHHH
T ss_pred EEEEecCCCHHHHHHHHHHH
Confidence 9999999 999999999875
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.78 E-value=2e-17 Score=160.42 Aligned_cols=171 Identities=16% Similarity=0.120 Sum_probs=145.7
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH----------------HHHHHHHCCCHHHHHHHHHHHHh
Q 005108 241 DAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSN----------------RAAALTGLGRIGEAVKECEEAVR 304 (714)
Q Consensus 241 ~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~----------------la~~~~~~g~~~~A~~~~~~al~ 304 (714)
+++.++..|..++..|++++|+.+|+++++.+|+++.+|+. +|.+|..+|++++|+..|+++++
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 56888999999999999999999999999999999999999 99999999999999999999999
Q ss_pred cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 005108 305 LDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADF 384 (714)
Q Consensus 305 ~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~ 384 (714)
++|++..+++.+|.++...|++++|+..| +++++++|++
T Consensus 83 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~-----------------------------------------~~al~~~P~~ 121 (208)
T 3urz_A 83 KAPNNVDCLEACAEMQVCRGQEKDALRMY-----------------------------------------EKILQLEADN 121 (208)
T ss_dssp HCTTCHHHHHHHHHHHHHHTCHHHHHHHH-----------------------------------------HHHHHHCTTC
T ss_pred HCCCCHHHHHHHHHHHHHcCCHHHHHHHH-----------------------------------------HHHHHcCCCC
Confidence 99999999999999998888888777766 5566777774
Q ss_pred CHHHHHHHHHHHHHcCC--HHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhc
Q 005108 385 SPQLSMCRVEALLKLHQ--LEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQ 462 (714)
Q Consensus 385 ~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 462 (714)
...+..+|.+|...++ .+.+...+++++...|. ...++.+|.++...|++++|+.+|+++++
T Consensus 122 -~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~a~~~~g~~~~~~~~~~~A~~~~~~al~ 185 (208)
T 3urz_A 122 -LAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKM---------------QYARYRDGLSKLFTTRYEKARNSLQKVIL 185 (208)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHH---------------HHHHHHHHHHHHHHHTHHHHHHHHHHHTT
T ss_pred -HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCch---------------hHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 5667779999877654 55677888887654332 45688899999999999999999999999
Q ss_pred cCCCCH
Q 005108 463 IDPRNV 468 (714)
Q Consensus 463 ~~p~~~ 468 (714)
++|+..
T Consensus 186 l~P~~~ 191 (208)
T 3urz_A 186 RFPSTE 191 (208)
T ss_dssp TSCCHH
T ss_pred hCCCHH
Confidence 999743
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.77 E-value=4.3e-18 Score=150.54 Aligned_cols=120 Identities=28% Similarity=0.559 Sum_probs=111.1
Q ss_pred HhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 005108 460 AGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQ 539 (714)
Q Consensus 460 al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 539 (714)
+..++|+..+.+. ++|..+++.|+|++|+++|+++++++|.++.+|+++|.+|.++|++++|+..|++
T Consensus 5 ~a~inP~~a~~~~------------~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 72 (126)
T 4gco_A 5 LAYINPELAQEEK------------NKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDT 72 (126)
T ss_dssp --CCCHHHHHHHH------------HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHCHHHHHHHH------------HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHH
Confidence 4456776666655 4599999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005108 540 ALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAESLFHA 591 (714)
Q Consensus 540 al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~L~~~ 591 (714)
+++++|++..+|+.+|.+|..+|++++|++.|+++++++|++.+++..|..+
T Consensus 73 al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 73 CIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHhhhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999988765
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.76 E-value=3.2e-18 Score=173.28 Aligned_cols=230 Identities=14% Similarity=0.035 Sum_probs=163.4
Q ss_pred HcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCCcHHHHHHHH
Q 005108 254 RKGCFGEALSMYDKAISL--------APRNAAFRSNRAAALTGLGRIGEAVKECEEAVRL--------DPNYWRAHQRLG 317 (714)
Q Consensus 254 ~~g~~~~Al~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~la 317 (714)
..|++++|+.+|+++++. +|....++..+|.+|...|++++|+..|++++++ +|....++..+|
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 457777777777777763 2556889999999999999999999999999977 366688999999
Q ss_pred HHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 005108 318 SLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALL 397 (714)
Q Consensus 318 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~ 397 (714)
.+|...|++++|+.+|++++. .+++....+.......+..+|.+|.
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~----------------------------------~~~~~~~~~~~~~~~~~~~la~~~~ 138 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALE----------------------------------IREKVLGKFHPDVAKQLNNLALLCQ 138 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHH----------------------------------HHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHH----------------------------------HHHHHcCCCChHHHHHHHHHHHHHH
Confidence 999999999999999877642 1111111110112345667888888
Q ss_pred HcCCHHHHHHHhhccccC--------CCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhcc------
Q 005108 398 KLHQLEDAESSLSNIPKI--------EPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQI------ 463 (714)
Q Consensus 398 ~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------ 463 (714)
..|++++|+.+|+++++. .|.. ..++..+|.++...|++++|+.+|++++++
T Consensus 139 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~--------------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~ 204 (283)
T 3edt_B 139 NQGKAEEVEYYYRRALEIYATRLGPDDPNV--------------AKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEF 204 (283)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHHSCTTCHHH--------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHS
T ss_pred HcCCHHHHHHHHHHHHHHHHHhcCCCCHHH--------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence 888888888888888876 3332 678999999999999999999999999976
Q ss_pred ---CCCCHHHHHHHHhHHHHHHHHHHHhHHhh------CcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHH
Q 005108 464 ---DPRNVEVAVLLNNVKLVARARARGNDLFK------SERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSV 534 (714)
Q Consensus 464 ---~p~~~~~~~~l~~l~~~~~~~~~g~~~~~------~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 534 (714)
.+.....+..+ +..+.. ...+.++...++......|....++..+|.+|..+|++++|+
T Consensus 205 ~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 272 (283)
T 3edt_B 205 GSVNGDNKPIWMHA------------EEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAH 272 (283)
T ss_dssp SSCCSSCCCHHHHH------------HHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCcchhHHHHHHHH------------HHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 33344444433 333332 334555666666655556666778888888888888888888
Q ss_pred HHHHHHHHh
Q 005108 535 EDSNQALLI 543 (714)
Q Consensus 535 ~~~~~al~~ 543 (714)
.+|++++++
T Consensus 273 ~~~~~al~~ 281 (283)
T 3edt_B 273 TLEDCASRN 281 (283)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHHh
Confidence 888888765
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.76 E-value=1.7e-17 Score=169.96 Aligned_cols=239 Identities=14% Similarity=0.000 Sum_probs=177.4
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC------cHHHHHHHHHHHHHcCCHHHHH
Q 005108 257 CFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPN------YWRAHQRLGSLLVRLGQVENAR 330 (714)
Q Consensus 257 ~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~a~~~la~~~~~~g~~~~A~ 330 (714)
++++|+.+|+++ |.+|..+|++++|+..|++++++.+. ...+|..+|.+|..+|++++|+
T Consensus 32 ~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~ 97 (292)
T 1qqe_A 32 KFEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAV 97 (292)
T ss_dssp HHHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 489999999887 56788899999999999999887432 2678899999999999999999
Q ss_pred HHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc-CCHHHHHHHh
Q 005108 331 RHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKL-HQLEDAESSL 409 (714)
Q Consensus 331 ~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~-g~~~~A~~~~ 409 (714)
.+|++++. .+...|++..+. ..+..+|.+|... |++++|+.+|
T Consensus 98 ~~~~~Al~---------------------l~~~~g~~~~~a---------------~~~~~lg~~~~~~lg~~~~A~~~~ 141 (292)
T 1qqe_A 98 DSLENAIQ---------------------IFTHRGQFRRGA---------------NFKFELGEILENDLHDYAKAIDCY 141 (292)
T ss_dssp HHHHHHHH---------------------HHHHTTCHHHHH---------------HHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHH---------------------HHHHcCCHHHHH---------------HHHHHHHHHHHHhhcCHHHHHHHH
Confidence 99887752 122334443332 2345689999996 9999999999
Q ss_pred hccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhH
Q 005108 410 SNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGND 489 (714)
Q Consensus 410 ~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~ 489 (714)
++++++.|.... ......++..+|.++..+|++++|+.+|++++++.|++....+. ....+..+|.+
T Consensus 142 ~~Al~~~~~~~~--------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-----~~~~~~~lg~~ 208 (292)
T 1qqe_A 142 ELAGEWYAQDQS--------VALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWS-----LKDYFLKKGLC 208 (292)
T ss_dssp HHHHHHHHHTTC--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGG-----HHHHHHHHHHH
T ss_pred HHHHHHHHhCCC--------hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHH-----HHHHHHHHHHH
Confidence 999988775411 11124578899999999999999999999999999887542100 00111245999
Q ss_pred HhhCcCHHHHHHHHHHhhccCCCCHH-----HHHHHHHHHH--HhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005108 490 LFKSERFTEACQAYGEGLRFDPSNSV-----LYCNRAACWF--KLGQWERSVEDSNQALLIQPNYTKALLRRAASN 558 (714)
Q Consensus 490 ~~~~g~~~~A~~~~~~al~~~p~~~~-----~~~~la~~~~--~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 558 (714)
+...|++++|+.+|+++++++|.... .+..++..+. ..+++++|+..|++++.++|.+..++..+-..+
T Consensus 209 ~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~~~~k~~~ 284 (292)
T 1qqe_A 209 QLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILNKIKESI 284 (292)
T ss_dssp HHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHHHHHHHHh
Confidence 99999999999999999999998654 3455666664 467899999999999999988776666555444
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.76 E-value=3.2e-19 Score=187.08 Aligned_cols=273 Identities=13% Similarity=0.035 Sum_probs=149.6
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 005108 240 GDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSL 319 (714)
Q Consensus 240 ~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~ 319 (714)
+++..|..+|.++.+.|++++|++.|.++ .++..+...+.++...|++++|+.+++.+++..++ +.+...++.+
T Consensus 30 ~~~~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~-~~i~~~Li~~ 103 (449)
T 1b89_A 30 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE-SYVETELIFA 103 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCcc-chhHHHHHHH
Confidence 44579999999999999999999999875 46678999999999999999999999999885444 7778899999
Q ss_pred HHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 005108 320 LVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKL 399 (714)
Q Consensus 320 ~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~ 399 (714)
|.++|++.++.+++.. +. ...+...|..+...|.|++|+.+|.++ ..|..++.++.++
T Consensus 104 Y~Klg~l~e~e~f~~~------pn-------~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~L 161 (449)
T 1b89_A 104 LAKTNRLAELEEFING------PN-------NAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHL 161 (449)
T ss_dssp -----CHHHHTTTTTC------C-----------------------CTTTHHHHHHHT---------TCHHHHHHHHHTT
T ss_pred HHHhCCHHHHHHHHcC------Cc-------HHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHh
Confidence 9999999998877742 11 126777888899999999999999976 2477799999999
Q ss_pred CCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHH
Q 005108 400 HQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKL 479 (714)
Q Consensus 400 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~ 479 (714)
|++++|++.++++ .+ ..+|.....++...|+++.|..+... +...|++.. .
T Consensus 162 g~yq~AVea~~KA-----~~--------------~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~~ad~l~---~------ 212 (449)
T 1b89_A 162 GEYQAAVDGARKA-----NS--------------TRTWKEVCFACVDGKEFRLAQMCGLH-IVVHADELE---E------ 212 (449)
T ss_dssp TCHHHHHHHHHHH-----TC--------------HHHHHHHHHHHHHTTCHHHHHHTTTT-TTTCHHHHH---H------
T ss_pred ccHHHHHHHHHHc-----CC--------------chhHHHHHHHHHHcCcHHHHHHHHHH-HHhCHhhHH---H------
Confidence 9999999999999 24 67899999999999999999877765 334554422 2
Q ss_pred HHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHH--hCCHHHHHHHHHHHHHhCC-----CCHHHHH
Q 005108 480 VARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFK--LGQWERSVEDSNQALLIQP-----NYTKALL 552 (714)
Q Consensus 480 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~p-----~~~~~~~ 552 (714)
+...|.+.|++++|+.++++++.+++.+..++..+|.+|.+ .++..+.++.|...+.+.| ++...|.
T Consensus 213 ------lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~ 286 (449)
T 1b89_A 213 ------LINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWA 286 (449)
T ss_dssp ------HHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHH
T ss_pred ------HHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 27789999999999999999999999999999999998876 5678888888888777777 7778899
Q ss_pred HHHHHHHHhccHHHHHHHHHHHH
Q 005108 553 RRAASNSKLEKWADAVRDFEVLR 575 (714)
Q Consensus 553 ~la~~~~~~g~~~eA~~~~~~al 575 (714)
.+..+|.+.++|+.|+..+-+..
T Consensus 287 e~~~ly~~~~e~d~A~~tm~~h~ 309 (449)
T 1b89_A 287 ELVFLYDKYEEYDNAIITMMNHP 309 (449)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHST
T ss_pred HHHHHHHhhchHHHHHHHHHhCC
Confidence 99999999999999998665543
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.76 E-value=3.6e-17 Score=160.71 Aligned_cols=84 Identities=13% Similarity=0.101 Sum_probs=75.1
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHH---HHH
Q 005108 241 DAEELKRMGNELYRKGCFGEALSMYDKAISLAPRN---AAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWR---AHQ 314 (714)
Q Consensus 241 ~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---a~~ 314 (714)
++..++.+|..++..|+|++|+..|+++++..|.+ ..+++.+|.+|..+|++++|+..|+++++.+|++.. +++
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 56789999999999999999999999999999876 478999999999999999999999999999998754 788
Q ss_pred HHHHHHHHcC
Q 005108 315 RLGSLLVRLG 324 (714)
Q Consensus 315 ~la~~~~~~g 324 (714)
.+|.++..++
T Consensus 83 ~~g~~~~~~~ 92 (225)
T 2yhc_A 83 MRGLTNMALD 92 (225)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhhh
Confidence 8888877654
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=5.9e-16 Score=158.32 Aligned_cols=170 Identities=14% Similarity=0.118 Sum_probs=145.6
Q ss_pred HHHHcCCHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC----------HHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 005108 251 ELYRKGCFG-EALSMYDKAISLAPRNAAFRSNRAAALTGLGR----------IGEAVKECEEAVRLDPNYWRAHQRLGSL 319 (714)
Q Consensus 251 ~~~~~g~~~-~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~p~~~~a~~~la~~ 319 (714)
...+.|++. +|+.++++++..+|++..+|+.++.++..+++ +++++..++.++..+|.+..+|...+.+
T Consensus 38 ~~~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wl 117 (331)
T 3dss_A 38 QKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWL 117 (331)
T ss_dssp HHHHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 344677776 79999999999999999999999999988876 7899999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 005108 320 LVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKL 399 (714)
Q Consensus 320 ~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~ 399 (714)
+..+++ .++++++..++++++.+|.+ ...|..++.++...
T Consensus 118 L~~l~~---------------------------------------~~~~~EL~~~~k~l~~dprN-y~AW~~R~~vl~~l 157 (331)
T 3dss_A 118 LSRLPE---------------------------------------PNWARELELCARFLEADERN-FHCWDYRRFVAAQA 157 (331)
T ss_dssp HHHCSS---------------------------------------CCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHT
T ss_pred HhccCc---------------------------------------ccHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHh
Confidence 887763 02344555667778888874 45566688888899
Q ss_pred CC-HHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHh--------------CcHHHHHHHHHHHhccC
Q 005108 400 HQ-LEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMAL--------------GRFENAVTAAEKAGQID 464 (714)
Q Consensus 400 g~-~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~--------------g~~~~A~~~~~~al~~~ 464 (714)
|. ++++++++.++++.+|.+ ..+|..++.++... +.++++++++.+++..+
T Consensus 158 ~~~~~eel~~~~~~I~~~p~N--------------~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~ 223 (331)
T 3dss_A 158 AVAPAEELAFTDSLITRNFSN--------------YSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD 223 (331)
T ss_dssp TCCHHHHHHHHHHHHHHCSCC--------------HHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS
T ss_pred CcCHHHHHHHHHHHHHHCCCC--------------HHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC
Confidence 98 599999999999999999 78899999998887 56999999999999999
Q ss_pred CCCHHHHHHH
Q 005108 465 PRNVEVAVLL 474 (714)
Q Consensus 465 p~~~~~~~~l 474 (714)
|++..+|+.+
T Consensus 224 P~d~SaW~Y~ 233 (331)
T 3dss_A 224 PNDQSAWFYH 233 (331)
T ss_dssp TTCHHHHHHH
T ss_pred CCCHHHHHHH
Confidence 9999999866
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.75 E-value=5.9e-17 Score=159.14 Aligned_cols=191 Identities=15% Similarity=0.160 Sum_probs=133.3
Q ss_pred HHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhh
Q 005108 353 KHLSKCTDARKVGDWKSALREGDAAIAAGADFS--PQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGM 430 (714)
Q Consensus 353 ~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 430 (714)
.++.++..+...|++++|+..|+++++..|... ...+..+|.+|...|++++|+..|+++++.+|++..
T Consensus 6 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~--------- 76 (225)
T 2yhc_A 6 EIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN--------- 76 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT---------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCc---------
Confidence 455556666666666666666666666666432 344555666666666666666666666666666510
Q ss_pred hhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccC
Q 005108 431 LSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFD 510 (714)
Q Consensus 431 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~ 510 (714)
...+++.+|.++...+.. .++ .+ ..++..+...|++++|+..|+++++.+
T Consensus 77 --~~~a~~~~g~~~~~~~~~-----~~~-----------~~------------~~~~~~~~~~~~~~~A~~~~~~~l~~~ 126 (225)
T 2yhc_A 77 --IDYVMYMRGLTNMALDDS-----ALQ-----------GF------------FGVDRSDRDPQQARAAFSDFSKLVRGY 126 (225)
T ss_dssp --HHHHHHHHHHHHHHHHC------------------------------------------CCHHHHHHHHHHHHHHTTC
T ss_pred --HHHHHHHHHHHHHhhhhh-----hhh-----------hh------------hccchhhcCcHHHHHHHHHHHHHHHHC
Confidence 123555566665554421 000 01 123566677899999999999999999
Q ss_pred CCCHHHH-----------------HHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhccHHHHHHH
Q 005108 511 PSNSVLY-----------------CNRAACWFKLGQWERSVEDSNQALLIQPNYT---KALLRRAASNSKLEKWADAVRD 570 (714)
Q Consensus 511 p~~~~~~-----------------~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~eA~~~ 570 (714)
|++..++ +.+|.+|.+.|++++|+..|+++++..|+++ .+++.+|.+|.++|++++|++.
T Consensus 127 P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~ 206 (225)
T 2yhc_A 127 PNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKV 206 (225)
T ss_dssp TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHH
Confidence 9986544 5789999999999999999999999999986 7899999999999999999999
Q ss_pred HHHHHHhCCCCH
Q 005108 571 FEVLRRELPDDN 582 (714)
Q Consensus 571 ~~~al~~~p~~~ 582 (714)
++++....|++.
T Consensus 207 ~~~l~~~~~~~~ 218 (225)
T 2yhc_A 207 AKIIAANSSNTL 218 (225)
T ss_dssp HHHHHHCCSCCC
T ss_pred HHHHHhhCCCch
Confidence 999999888764
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.74 E-value=4.8e-18 Score=171.93 Aligned_cols=234 Identities=15% Similarity=0.045 Sum_probs=169.0
Q ss_pred HCCCHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhH
Q 005108 288 GLGRIGEAVKECEEAVRL--------DPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCT 359 (714)
Q Consensus 288 ~~g~~~~A~~~~~~al~~--------~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~ 359 (714)
..|++++|+..|++++++ +|....++..+|.+|...|++++|+.+|++++.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--------------------- 71 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALA--------------------- 71 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---------------------
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH---------------------
Confidence 456777777777777763 256688999999999999999999999877642
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCC-----CCCCCchhhhhhhhhhhH
Q 005108 360 DARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIE-----PSTVSSSQTRFFGMLSEA 434 (714)
Q Consensus 360 ~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~~~~~~~~~~~ 434 (714)
.+++....+.......+..+|.+|...|++++|+.+|+++++.. +++ ....
T Consensus 72 -------------~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-----------~~~~ 127 (283)
T 3edt_B 72 -------------IREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFH-----------PDVA 127 (283)
T ss_dssp -------------HHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTC-----------HHHH
T ss_pred -------------HHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCC-----------hHHH
Confidence 11111001111123456668888888888888888888888762 211 0127
Q ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHhcc--------CCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHh
Q 005108 435 YTFFVRAQIEMALGRFENAVTAAEKAGQI--------DPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEG 506 (714)
Q Consensus 435 ~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~a 506 (714)
.++..+|.++...|++++|+.+|++++++ .|....++.. +|.++...|++++|+.+|+++
T Consensus 128 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~------------la~~~~~~g~~~~A~~~~~~~ 195 (283)
T 3edt_B 128 KQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNN------------LASCYLKQGKYQDAETLYKEI 195 (283)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH------------HHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH------------HHHHHHHcCCHHHHHHHHHHH
Confidence 78999999999999999999999999987 3433344433 499999999999999999999
Q ss_pred hcc---------CCCCHHHHHHHHHHHHHhCC------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHH
Q 005108 507 LRF---------DPSNSVLYCNRAACWFKLGQ------WERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDF 571 (714)
Q Consensus 507 l~~---------~p~~~~~~~~la~~~~~~g~------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~ 571 (714)
+++ .+....++..++..+...+. +.++...++......|....++..+|.+|..+|++++|+.+|
T Consensus 196 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 275 (283)
T 3edt_B 196 LTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLE 275 (283)
T ss_dssp HHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 986 45556777777777776554 444444444444445667789999999999999999999999
Q ss_pred HHHHHhC
Q 005108 572 EVLRREL 578 (714)
Q Consensus 572 ~~al~~~ 578 (714)
++++++.
T Consensus 276 ~~al~~~ 282 (283)
T 3edt_B 276 DCASRNR 282 (283)
T ss_dssp HHHHTTC
T ss_pred HHHHHhh
Confidence 9998753
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.74 E-value=7.2e-17 Score=152.00 Aligned_cols=170 Identities=18% Similarity=0.150 Sum_probs=158.7
Q ss_pred HHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhh
Q 005108 352 EKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGML 431 (714)
Q Consensus 352 ~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 431 (714)
..++.++..+...|++++|+..++++++..|.. ...+..++.++...|++++|+.+++++++.+|.+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~------------ 75 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFD-VDVALHLGIAYVKTGAVDRGTELLERSLADAPDN------------ 75 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------------
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------------
Confidence 456677888999999999999999999998874 6777789999999999999999999999999988
Q ss_pred hhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCC
Q 005108 432 SEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDP 511 (714)
Q Consensus 432 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p 511 (714)
..++..+|.++...|++++|+.++++++...|.+...+..+ |.++...|++++|+.+|+++++..|
T Consensus 76 --~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~------------a~~~~~~~~~~~A~~~~~~~~~~~~ 141 (186)
T 3as5_A 76 --VKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRL------------GVALDNLGRFDEAIDSFKIALGLRP 141 (186)
T ss_dssp --HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred --HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHH------------HHHHHHcCcHHHHHHHHHHHHhcCc
Confidence 78899999999999999999999999999999999888766 9999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH
Q 005108 512 SNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYT 548 (714)
Q Consensus 512 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 548 (714)
.+..++..+|.++...|++++|+.+++++++++|++.
T Consensus 142 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~ 178 (186)
T 3as5_A 142 NEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGAS 178 (186)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCC
T ss_pred cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCch
Confidence 9999999999999999999999999999999988764
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.73 E-value=1.1e-17 Score=152.44 Aligned_cols=125 Identities=15% Similarity=0.094 Sum_probs=116.0
Q ss_pred HhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHH
Q 005108 446 ALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWF 525 (714)
Q Consensus 446 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 525 (714)
..+++-.+-..+++++.++|++...++.+ |.+++..|++++|+.+|+++++++|+++.+|+++|.+|.
T Consensus 14 ~l~~~~~~~~~l~~al~l~p~~~~~~~~l------------g~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~ 81 (151)
T 3gyz_A 14 AVIDAINSGATLKDINAIPDDMMDDIYSY------------AYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQ 81 (151)
T ss_dssp HHHHHHHTSCCTGGGCCSCHHHHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCHHHHhCCCHHHHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 33444445567788999999999998876 999999999999999999999999999999999999999
Q ss_pred HhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCH
Q 005108 526 KLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDN 582 (714)
Q Consensus 526 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~ 582 (714)
.+|++++|+..|+++++++|+++.+|+++|.+|..+|++++|+..|++++++.|+.+
T Consensus 82 ~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 82 IKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 999999999999999999999999999999999999999999999999999999865
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.3e-15 Score=155.76 Aligned_cols=246 Identities=11% Similarity=0.027 Sum_probs=204.1
Q ss_pred HHCCCHH-HHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcC
Q 005108 287 TGLGRIG-EAVKECEEAVRLDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVG 365 (714)
Q Consensus 287 ~~~g~~~-~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g 365 (714)
.+.|.+. +|+..+.+++.++|++..+|+..+.++..++... ++.. ...
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~-------------~~~~------------------~~~ 88 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEK-------------SPEE------------------SAA 88 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHS-------------CHHH------------------HHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccc-------------cchh------------------hhH
Confidence 3456664 8999999999999999999999999987654310 0000 012
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC--HHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHH
Q 005108 366 DWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQ--LEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQI 443 (714)
Q Consensus 366 ~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~ 443 (714)
.+++++..++.++..+|. +..+|..++.++...++ +++++.++.++++.+|.+ ..+|...+.+
T Consensus 89 ~l~~EL~~~~~~L~~~PK-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprN--------------y~AW~~R~~v 153 (331)
T 3dss_A 89 LVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEADERN--------------FHCWDYRRFV 153 (331)
T ss_dssp HHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTC--------------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCC--------------HHHHHHHHHH
Confidence 356788899999999998 46677779999999994 899999999999999999 8999999999
Q ss_pred HHHhCc-HHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhC--------------cCHHHHHHHHHHhhc
Q 005108 444 EMALGR-FENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKS--------------ERFTEACQAYGEGLR 508 (714)
Q Consensus 444 ~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~--------------g~~~~A~~~~~~al~ 508 (714)
+...|. ++++++++.++++.+|.+..+|... +.++... +.++++++++.+++.
T Consensus 154 l~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R------------~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~ 221 (331)
T 3dss_A 154 AAQAAVAPAEELAFTDSLITRNFSNYSSWHYR------------SCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFF 221 (331)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHH------------HHHHHHHSCCC------CCCHHHHHHHHHHHHHHHH
T ss_pred HHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHH------------HHHHHHhhhccccccccccchHHHHHHHHHHHHHHH
Confidence 999999 6999999999999999999999876 5555544 569999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHh-----------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH---HhccHHHHHHHHHHH
Q 005108 509 FDPSNSVLYCNRAACWFKL-----------GQWERSVEDSNQALLIQPNYTKALLRRAASNS---KLEKWADAVRDFEVL 574 (714)
Q Consensus 509 ~~p~~~~~~~~la~~~~~~-----------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~---~~g~~~eA~~~~~~a 574 (714)
.+|+|..+|+.+..++... +.++++++.+++++++.|++...+..++.+.. ..+..++...++.++
T Consensus 222 ~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l 301 (331)
T 3dss_A 222 TDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTL 301 (331)
T ss_dssp HSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHH
Confidence 9999999998776666655 56899999999999999999766666654433 357888999999999
Q ss_pred HHhCCCCHHHHHHHHH
Q 005108 575 RRELPDDNEIAESLFH 590 (714)
Q Consensus 575 l~~~p~~~~~~~~L~~ 590 (714)
+++||.....+..+..
T Consensus 302 ~~~Dp~r~~~y~d~~~ 317 (331)
T 3dss_A 302 KAVDPMRAAYLDDLRS 317 (331)
T ss_dssp HHHCGGGHHHHHHHHH
T ss_pred HHhCcchhhHHHHHHH
Confidence 9999998887776643
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.72 E-value=4.3e-17 Score=144.09 Aligned_cols=113 Identities=19% Similarity=0.208 Sum_probs=109.2
Q ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCC
Q 005108 434 AYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSN 513 (714)
Q Consensus 434 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~ 513 (714)
+..+..+|..++..|+|++|++.|+++++++|++..++..+ |.++...|++++|+..|+++++++|++
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~------------~~~~~~~~~~~~A~~~~~~al~~~p~~ 80 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNR------------AACLTKLMEFQRALDDCDTCIRLDSKF 80 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH------------hhHHHhhccHHHHHHHHHHHHHhhhhh
Confidence 78899999999999999999999999999999999998866 999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005108 514 SVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASN 558 (714)
Q Consensus 514 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 558 (714)
..+|+++|.+|..+|++++|++.|+++++++|++..++..++.++
T Consensus 81 ~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 81 IKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999988764
|
| >3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.9e-17 Score=143.07 Aligned_cols=99 Identities=20% Similarity=0.350 Sum_probs=85.2
Q ss_pred ceeeehhhhHHhhhcc-CCC--ceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCcchhhhCCccccceEEE
Q 005108 611 EVEEVSSLEQFRAAVS-LPG--VSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAHAENVRIVPTFKI 687 (714)
Q Consensus 611 ~~~~i~~~e~~~~~i~-~~~--~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~ 687 (714)
.+.+++. ++|...+. ... +++|+||++||++|+.+.|.+++++.+|+++.|++||+|+. +..|+|+++||+++
T Consensus 4 ~v~~it~-~~f~~~v~~~~~~~~vvv~F~a~wc~~C~~~~p~l~~la~~~~~v~f~kvd~d~~---~~~~~v~~~PT~~~ 79 (118)
T 3evi_A 4 ELREISG-NQYVNEVTNAEEDVWVIIHLYRSSIPMCLLVNQHLSLLARKFPETKFVKAIVNSC---IQHYHDNCLPTIFV 79 (118)
T ss_dssp SCEECCG-GGHHHHTTTCCTTCEEEEEEECTTSHHHHHHHHHHHHHHHHCTTSEEEEEEGGGT---STTCCGGGCSEEEE
T ss_pred ceEEeCH-HHHHHHHHhcCCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCCEEEEEEhHHh---HHHCCCCCCCEEEE
Confidence 4455544 55665443 333 89999999999999999999999999999999999999985 68999999999999
Q ss_pred EeCCeEEEEEcCC--------CHHHHHHHHhhhc
Q 005108 688 YKNGSRMKEIVCP--------SRDMLEHSVRHYS 713 (714)
Q Consensus 688 ~~~G~~~~~~~g~--------~~~~l~~~~~~~~ 713 (714)
|+||+.+.+++|+ +.++|+.+|.+++
T Consensus 80 fk~G~~v~~~~G~~~~gg~~~~~~~le~~L~~~g 113 (118)
T 3evi_A 80 YKNGQIEAKFIGIIECGGINLKLEELEWKLAEVG 113 (118)
T ss_dssp EETTEEEEEEESTTTTTCSSCCHHHHHHHHHTTT
T ss_pred EECCEEEEEEeChhhhCCCCCCHHHHHHHHHHcC
Confidence 9999999999986 4799999998865
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.72 E-value=5e-17 Score=152.96 Aligned_cols=161 Identities=14% Similarity=0.068 Sum_probs=143.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCH
Q 005108 389 SMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNV 468 (714)
Q Consensus 389 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 468 (714)
+..+|..+...|++++|+..|+++++.+|++ ..+++.+|.++...|++++|+..|++++..+| ++
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~--------------~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~ 73 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSR--------------GDVKLAKADCLLETKQFELAQELLATIPLEYQ-DN 73 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTS--------------HHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc--------------HHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-Ch
Confidence 4568999999999999999999999999999 88999999999999999999999999999999 77
Q ss_pred HHHHHHHhHHHHHHHHHHHhH-HhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC
Q 005108 469 EVAVLLNNVKLVARARARGND-LFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNY 547 (714)
Q Consensus 469 ~~~~~l~~l~~~~~~~~~g~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 547 (714)
..+..+ +.+ +...++..+|+..|+++++.+|+++.+++++|.++...|++++|+..|+++++.+|++
T Consensus 74 ~~~~~~------------~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 141 (176)
T 2r5s_A 74 SYKSLI------------AKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGA 141 (176)
T ss_dssp HHHHHH------------HHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTT
T ss_pred HHHHHH------------HHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccc
Confidence 655433 222 1222334468999999999999999999999999999999999999999999999976
Q ss_pred --HHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 005108 548 --TKALLRRAASNSKLEKWADAVRDFEVLRR 576 (714)
Q Consensus 548 --~~~~~~la~~~~~~g~~~eA~~~~~~al~ 576 (714)
..++..++.++..+|++++|+..|++++.
T Consensus 142 ~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 142 QDGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp TTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 56999999999999999999999999875
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.71 E-value=9.7e-16 Score=162.63 Aligned_cols=283 Identities=13% Similarity=-0.021 Sum_probs=203.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--------CC
Q 005108 243 EELKRMGNELYRKGCFGEALSMYDKAISLAPRN------AAFRSNRAAALTGLGRIGEAVKECEEAVRLD--------PN 308 (714)
Q Consensus 243 ~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~ 308 (714)
..+..+|..+...|++++|+..+++++...+.. ..++..+|.++...|++++|+..|++++++. |.
T Consensus 54 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~ 133 (373)
T 1hz4_A 54 VATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPM 133 (373)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcH
Confidence 367889999999999999999999999876543 3457889999999999999999999999864 33
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH
Q 005108 309 YWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQL 388 (714)
Q Consensus 309 ~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~ 388 (714)
...++..+|.++...|++++|+.++++++...... ++......
T Consensus 134 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-------------------------------------~~~~~~~~ 176 (373)
T 1hz4_A 134 HEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSY-------------------------------------QPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTS-------------------------------------CGGGGHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcc-------------------------------------CcHHHHHH
Confidence 45677888889888888888888887765311000 00012234
Q ss_pred HHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCH
Q 005108 389 SMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNV 468 (714)
Q Consensus 389 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 468 (714)
+..++.++...|++++|+.++++++.+.+..... ..........++.++...|++++|..++++++...+...
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 249 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYH-------SDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANN 249 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCC-------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcc-------hhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcc
Confidence 5567888888888888888888887653322000 000111223455668899999999999999998776532
Q ss_pred HHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCC------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 005108 469 EVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPS------NSVLYCNRAACWFKLGQWERSVEDSNQALL 542 (714)
Q Consensus 469 ~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 542 (714)
.... ..+..++.++...|++++|+..+++++...+. ...++..+|.++...|++++|...|++++.
T Consensus 250 ~~~~--------~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 250 HFLQ--------GQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp GGGH--------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hhhH--------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 1100 00123489999999999999999999876432 235888899999999999999999999998
Q ss_pred hCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHH
Q 005108 543 IQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEI 584 (714)
Q Consensus 543 ~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~ 584 (714)
+.+.. .....+...| +.....+++++...|-+.-.
T Consensus 322 ~~~~~-----g~~~~~~~~g--~~~~~ll~~~~~~~~~~~~~ 356 (373)
T 1hz4_A 322 LANRT-----GFISHFVIEG--EAMAQQLRQLIQLNTLPELE 356 (373)
T ss_dssp HHHHH-----CCCHHHHTTH--HHHHHHHHHHHHTTCSCHHH
T ss_pred Hhccc-----cHHHHHHHcc--HHHHHHHHHHHhCCCCchHH
Confidence 74321 1223334444 67788888889888875433
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.71 E-value=2e-16 Score=163.22 Aligned_cols=239 Identities=11% Similarity=0.027 Sum_probs=168.5
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 005108 254 RKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTG-LGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVRLGQVENARRH 332 (714)
Q Consensus 254 ~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~ 332 (714)
..|++++|.++++++.+..+.. ++. .+++++|+..|.++ +.+|...|++++|+..
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~~----------~~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKTS----------FMKWKPDYDSAASEYAKA--------------AVAFKNAKQLEQAKDA 58 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCC----------SSSCSCCHHHHHHHHHHH--------------HHHHHHTTCHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHcccc----------ccCCCCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHH
Confidence 4577888888888888776642 122 47888888888765 5577778888888888
Q ss_pred HHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHhhcc
Q 005108 333 LCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNI 412 (714)
Q Consensus 333 ~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 412 (714)
|.+++. ++...++...+. ..+..+|.+|..+|++++|+.+|+++
T Consensus 59 ~~~al~---------------------~~~~~~~~~~~a---------------~~~~~lg~~~~~~g~~~~A~~~~~~A 102 (307)
T 2ifu_A 59 YLQEAE---------------------AHANNRSLFHAA---------------KAFEQAGMMLKDLQRMPEAVQYIEKA 102 (307)
T ss_dssp HHHHHH---------------------HHHHTTCHHHHH---------------HHHHHHHHHHHHTTCGGGGHHHHHHH
T ss_pred HHHHHH---------------------HHHHcCCHHHHH---------------HHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 776641 122233333322 34456788899999999999999998
Q ss_pred ccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhh
Q 005108 413 PKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFK 492 (714)
Q Consensus 413 l~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~ 492 (714)
+++.+... .....+.++..+|.+|.. |++++|+.+|++++++.+...... .....+.++|.++..
T Consensus 103 l~l~~~~g--------~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~------~~~~~~~~lg~~~~~ 167 (307)
T 2ifu_A 103 SVMYVENG--------TPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLR------QAAELIGKASRLLVR 167 (307)
T ss_dssp HHHHHTTT--------CHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHH------HHHHHHHHHHHHHHH
T ss_pred HHHHHHcC--------CHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChh------HHHHHHHHHHHHHHH
Confidence 87754321 111235678899999998 999999999999998766431110 011223355999999
Q ss_pred CcCHHHHHHHHHHhhccCCCC------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHH-----HHHHHHHHHHHh
Q 005108 493 SERFTEACQAYGEGLRFDPSN------SVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTK-----ALLRRAASNSKL 561 (714)
Q Consensus 493 ~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-----~~~~la~~~~~~ 561 (714)
.|+|++|+.+|++++++.+.+ ..++..+|.++..+|++++|+.+|++++ ++|++.. .+..++..+ ..
T Consensus 168 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~ 245 (307)
T 2ifu_A 168 QQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DE 245 (307)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HT
T ss_pred cCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-Hh
Confidence 999999999999999976543 3478889999999999999999999999 9887542 344445544 45
Q ss_pred ccHHHHHH
Q 005108 562 EKWADAVR 569 (714)
Q Consensus 562 g~~~eA~~ 569 (714)
++.+.+.+
T Consensus 246 ~d~~~~~~ 253 (307)
T 2ifu_A 246 QDEEQLLR 253 (307)
T ss_dssp TCHHHHHH
T ss_pred cCHHHHHH
Confidence 55544433
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.71 E-value=3.2e-17 Score=171.95 Aligned_cols=279 Identities=13% Similarity=0.066 Sum_probs=172.5
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 005108 239 GGDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGS 318 (714)
Q Consensus 239 p~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~ 318 (714)
.+|+..+...+..+...|+|++|+.+++.+.+..+ ++.+...++.+|.++|++.++.+.++. |+ ..+|..+|.
T Consensus 58 a~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~-~~~i~~~Li~~Y~Klg~l~e~e~f~~~-----pn-~~a~~~IGd 130 (449)
T 1b89_A 58 ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR-ESYVETELIFALAKTNRLAELEEFING-----PN-NAHIQQVGD 130 (449)
T ss_dssp ----------------------------------------------------CHHHHTTTTTC-----C-----------
T ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCc-cchhHHHHHHHHHHhCCHHHHHHHHcC-----Cc-HHHHHHHHH
Confidence 35777899999999999999999999999988544 478888999999999999999888752 43 469999999
Q ss_pred HHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 005108 319 LLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLK 398 (714)
Q Consensus 319 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~ 398 (714)
.+...|+|++|+.+|.++ ..+..++.++.++|++++|++.+.++ ..+..|.....++..
T Consensus 131 ~~~~~g~yeeA~~~Y~~a---------------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~ 189 (449)
T 1b89_A 131 RCYDEKMYDAAKLLYNNV---------------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVD 189 (449)
T ss_dssp ------CTTTHHHHHHHT---------------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHh---------------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHH
Confidence 999999999999999876 35677888899999999999999999 257788889999999
Q ss_pred cCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHH
Q 005108 399 LHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVK 478 (714)
Q Consensus 399 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~ 478 (714)
.|+++.|..+...+. .+|+. ...+...|.+.|++++|+.++++++.+++.+...+..+
T Consensus 190 ~~ef~lA~~~~l~L~-~~ad~-----------------l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel---- 247 (449)
T 1b89_A 190 GKEFRLAQMCGLHIV-VHADE-----------------LEELINYYQDRGYFEELITMLEAALGLERAHMGMFTEL---- 247 (449)
T ss_dssp TTCHHHHHHTTTTTT-TCHHH-----------------HHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHH----
T ss_pred cCcHHHHHHHHHHHH-hCHhh-----------------HHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHH----
Confidence 999999988887643 55543 44578899999999999999999999999999988877
Q ss_pred HHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCC-----CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh----------
Q 005108 479 LVARARARGNDLFKSERFTEACQAYGEGLRFDP-----SNSVLYCNRAACWFKLGQWERSVEDSNQALLI---------- 543 (714)
Q Consensus 479 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---------- 543 (714)
....+-++.++..+.++.|...+.+.| .+..+|..+..+|.+.++|+.|+...-+....
T Consensus 248 ------~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~~~a~~~~~f~~~ 321 (449)
T 1b89_A 248 ------AILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDI 321 (449)
T ss_dssp ------HHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHH
T ss_pred ------HHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhCChhhhhhHHHHHH
Confidence 224455667889999999999888888 88999999999999999999999866544322
Q ss_pred --CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 005108 544 --QPNYTKALLRRAASNSKLEKWADAVRDFEVLR 575 (714)
Q Consensus 544 --~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al 575 (714)
.+.+.+.++.....|. +...+++..+..++
T Consensus 322 ~~kv~n~elyYkai~fyl--~~~p~~l~~ll~~l 353 (449)
T 1b89_A 322 ITKVANVELYYRAIQFYL--EFKPLLLNDLLMVL 353 (449)
T ss_dssp HHHCSSTHHHHHHHHHHH--HHCGGGHHHHHHHH
T ss_pred HhchhHHHHHHHHHHHHH--hcCHHHHHHHHHHH
Confidence 4566788887777776 44455566666665
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=2.1e-16 Score=178.00 Aligned_cols=160 Identities=13% Similarity=0.077 Sum_probs=135.7
Q ss_pred cCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHH
Q 005108 399 LHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVK 478 (714)
Q Consensus 399 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~ 478 (714)
.|++++|+..|+++++.+|.+ ..+++.+|.++...|++++|++.|+++++++|++..++..+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~--------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l---- 63 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQD--------------FVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARL---- 63 (568)
T ss_dssp -------------------CC--------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHH----
T ss_pred CccHHHHHHHHHHHHHhCCCC--------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH----
Confidence 478999999999999999998 88999999999999999999999999999999999988876
Q ss_pred HHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005108 479 LVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASN 558 (714)
Q Consensus 479 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 558 (714)
|.++...|++++|+++|+++++++|++..+++++|.+|.++|++++|++.|+++++++|++..++..++.++
T Consensus 64 --------g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 135 (568)
T 2vsy_A 64 --------GRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWR 135 (568)
T ss_dssp --------HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred --------HHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHh---ccHHHHHHHHHHHHHhCCCCHHH
Q 005108 559 SKL---EKWADAVRDFEVLRRELPDDNEI 584 (714)
Q Consensus 559 ~~~---g~~~eA~~~~~~al~~~p~~~~~ 584 (714)
..+ |++++|++.|+++++.+|++...
T Consensus 136 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 164 (568)
T 2vsy_A 136 RRLCDWRALDVLSAQVRAAVAQGVGAVEP 164 (568)
T ss_dssp HHTTCCTTHHHHHHHHHHHHHHTCCCSCH
T ss_pred HHhhccccHHHHHHHHHHHHhcCCcccCh
Confidence 999 99999999999999999986433
|
| >4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.70 E-value=2e-17 Score=141.11 Aligned_cols=99 Identities=14% Similarity=0.221 Sum_probs=79.9
Q ss_pred eehhhhHHhhhccCCCceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCcchhhhCCccccceEEEEeCCeE
Q 005108 614 EVSSLEQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSR 693 (714)
Q Consensus 614 ~i~~~e~~~~~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~ 693 (714)
.+.+.++|...+...++++++||++||++|+.+.|.++++..+++++.|+.||+++.+++++.|+|.++||+++|++|+.
T Consensus 4 ~i~~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~G~~ 83 (105)
T 4euy_A 4 TFKTIEELATYIEEQQLVLLFIKTENCGVCDVMLRKVNYVLENYNYVEKIEILLQDMQEIAGRYAVFTGPTVLLFYNGKE 83 (105)
T ss_dssp ------CCSSSTTCSSEEEEEEEESSCHHHHHHHHHHHHHHHTCTTEEEEEEEECCC---------CCCCEEEEEETTEE
T ss_pred ccCCHHHHHHHHhcCCCEEEEEeCCCCcchHHHHHHHHHHHHHcCCceEEEEECCCCHHHHHhcCCCCCCEEEEEeCCeE
Confidence 45566777787777889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCC-CHHHHHHHHhhh
Q 005108 694 MKEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 694 ~~~~~g~-~~~~l~~~~~~~ 712 (714)
+.++.|. +.++|+++|+++
T Consensus 84 ~~~~~g~~~~~~l~~~l~~~ 103 (105)
T 4euy_A 84 ILRESRFISLENLERTIQLF 103 (105)
T ss_dssp EEEEESSCCHHHHHHHHHTT
T ss_pred EEEEeCCcCHHHHHHHHHHh
Confidence 9999999 999999999875
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=6.4e-17 Score=147.42 Aligned_cols=134 Identities=13% Similarity=0.161 Sum_probs=123.2
Q ss_pred HHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHH
Q 005108 454 VTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERS 533 (714)
Q Consensus 454 ~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 533 (714)
-..|++++.++|++...++.+ |..++..|++++|+..|+++++.+|+++.+|+++|.+|..+|++++|
T Consensus 7 ~~~~~~al~~~p~~~~~~~~~------------g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A 74 (148)
T 2vgx_A 7 GGTIAMLNEISSDTLEQLYSL------------AFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLA 74 (148)
T ss_dssp CCSHHHHTTCCHHHHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred hhhHHHHHcCCHhhHHHHHHH------------HHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHH
Confidence 356889999999988888766 99999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhc
Q 005108 534 VEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAESLFHAQVSLKKSR 599 (714)
Q Consensus 534 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~L~~~~~~l~~~~ 599 (714)
+..|+++++++|+++.+++.+|.+|..+|++++|+.+|+++++++|++++......++...+...+
T Consensus 75 ~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~~l~ 140 (148)
T 2vgx_A 75 IHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSSMLEAIK 140 (148)
T ss_dssp HHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999888777777776666543
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.70 E-value=7e-16 Score=153.22 Aligned_cols=223 Identities=14% Similarity=0.043 Sum_probs=183.7
Q ss_pred HHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH-------HHHHHHcCCHHHHHHHhhccccCCCCCCCch
Q 005108 351 VEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCR-------VEALLKLHQLEDAESSLSNIPKIEPSTVSSS 423 (714)
Q Consensus 351 ~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~l-------a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 423 (714)
+..++..+.-+ ..+++..|++.|.+++..+|+. .+.|..+ +.++...++..+++..+++.+.+.|......
T Consensus 7 ~~~~~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~-~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~ 84 (282)
T 4f3v_A 7 LASLFESAVSM-LPMSEARSLDLFTEITNYDESA-CDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNAR 84 (282)
T ss_dssp HHHHHHHHHHH-TTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCE
T ss_pred HHHHHHHHhcc-cCCCHHHHHHHHHHHHHhChhh-hHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhh
Confidence 34445555555 5899999999999999999995 5666667 8999999999999999999999988863322
Q ss_pred hh--hhh-----hhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCH
Q 005108 424 QT--RFF-----GMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERF 496 (714)
Q Consensus 424 ~~--~~~-----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~ 496 (714)
.. -++ -......++..++.++...|+|++|.+.|+.++...|++. ..+.+ |.++++.++|
T Consensus 85 ~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~------------a~l~~~~~r~ 151 (282)
T 4f3v_A 85 IAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMK------------AVVYGAAERW 151 (282)
T ss_dssp EECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHH------------HHHHHHTTCH
T ss_pred hccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHH------------HHHHHHcCCH
Confidence 21 000 0112345677889999999999999999999999898777 65544 9999999999
Q ss_pred HHHHHHHHHhhccCCCC--HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CC-CHHHHHHHHHHHHHhccHHHHHHHH
Q 005108 497 TEACQAYGEGLRFDPSN--SVLYCNRAACWFKLGQWERSVEDSNQALLIQ--PN-YTKALLRRAASNSKLEKWADAVRDF 571 (714)
Q Consensus 497 ~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~-~~~~~~~la~~~~~~g~~~eA~~~~ 571 (714)
++|+.+|+++++..+.. ..+++++|.++..+|++++|+.+|++++.-. |. ..++++.+|.++.++|+.++|...|
T Consensus 152 ~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l 231 (282)
T 4f3v_A 152 TDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALL 231 (282)
T ss_dssp HHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999888764221 4589999999999999999999999998643 55 6689999999999999999999999
Q ss_pred HHHHHhCCCCHHHHHHHH
Q 005108 572 EVLRRELPDDNEIAESLF 589 (714)
Q Consensus 572 ~~al~~~p~~~~~~~~L~ 589 (714)
++++..+|+ ..+...|.
T Consensus 232 ~~a~a~~P~-~~~~~aL~ 248 (282)
T 4f3v_A 232 EWLQTTHPE-PKVAAALK 248 (282)
T ss_dssp HHHHHHSCC-HHHHHHHH
T ss_pred HHHHhcCCc-HHHHHHHh
Confidence 999999999 88877774
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=2.2e-16 Score=161.18 Aligned_cols=168 Identities=14% Similarity=0.055 Sum_probs=153.3
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHh
Q 005108 382 ADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAG 461 (714)
Q Consensus 382 p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 461 (714)
|+ ....+..+|..+...|++++|+..|+++++.+|++ ..+++.+|.++...|++++|+..|++++
T Consensus 114 p~-~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~--------------~~a~~~la~~~~~~g~~~~A~~~l~~~~ 178 (287)
T 3qou_A 114 PR-EEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQN--------------GEIGLLLAETLIALNRSEDAEAVLXTIP 178 (287)
T ss_dssp CC-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSC--------------HHHHHHHHHHHHHTTCHHHHHHHHTTSC
T ss_pred CC-chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcc--------------hhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 44 45666779999999999999999999999999999 8899999999999999999999999999
Q ss_pred ccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 005108 462 QIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQAL 541 (714)
Q Consensus 462 ~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 541 (714)
..+|+....+.. .+..+...++.++|+..|+++++.+|++..+++++|.+|...|++++|+..|++++
T Consensus 179 ~~~p~~~~~~~~------------~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l 246 (287)
T 3qou_A 179 LQDQDTRYQGLV------------AQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHL 246 (287)
T ss_dssp GGGCSHHHHHHH------------HHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhhcchHHHHHH------------HHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 999965433332 26667888899999999999999999999999999999999999999999999999
Q ss_pred HhCCCC--HHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 005108 542 LIQPNY--TKALLRRAASNSKLEKWADAVRDFEVLRR 576 (714)
Q Consensus 542 ~~~p~~--~~~~~~la~~~~~~g~~~eA~~~~~~al~ 576 (714)
+.+|++ ..++..++.++..+|+.++|+..|++++.
T Consensus 247 ~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 247 RXDLTAADGQTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hcccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 999998 89999999999999999999999999875
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=3.7e-15 Score=152.94 Aligned_cols=249 Identities=12% Similarity=-0.015 Sum_probs=199.4
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 005108 240 GDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLG-RIGEAVKECEEAVRLDPNYWRAHQRLGS 318 (714)
Q Consensus 240 ~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~a~~~la~ 318 (714)
+-.+++......+...+..++|++++++++.++|++..+|+.++.++..++ .+++++..+++++..+|++..+|...+.
T Consensus 52 ~y~~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~w 131 (349)
T 3q7a_A 52 EYKDAMDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLL 131 (349)
T ss_dssp HHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 334444444444555556678999999999999999999999999999999 5999999999999999999999988887
Q ss_pred HHHHc-CCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 005108 319 LLVRL-GQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALL 397 (714)
Q Consensus 319 ~~~~~-g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~ 397 (714)
++..+ +
T Consensus 132 lL~~l~~------------------------------------------------------------------------- 138 (349)
T 3q7a_A 132 LLDRISP------------------------------------------------------------------------- 138 (349)
T ss_dssp HHHHHCC-------------------------------------------------------------------------
T ss_pred HHHHhcC-------------------------------------------------------------------------
Confidence 76554 2
Q ss_pred HcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHH--------HHHHHHHHHhccCCCCHH
Q 005108 398 KLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFE--------NAVTAAEKAGQIDPRNVE 469 (714)
Q Consensus 398 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~--------~A~~~~~~al~~~p~~~~ 469 (714)
.+++++++++.++++.+|.+ ..+|..++.++...++++ +++++++++++.+|.|..
T Consensus 139 --~~~~~EL~~~~k~L~~dpkN--------------y~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~S 202 (349)
T 3q7a_A 139 --QDPVSEIEYIHGSLLPDPKN--------------YHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNS 202 (349)
T ss_dssp --SCCHHHHHHHHHHTSSCTTC--------------HHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred --CChHHHHHHHHHHHHhCCCC--------------HHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHH
Confidence 02346667777788888888 788888888888888887 999999999999999999
Q ss_pred HHHHHHhHHHHHHHHHHHhHHhhCcC-------HHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCH------------
Q 005108 470 VAVLLNNVKLVARARARGNDLFKSER-------FTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQW------------ 530 (714)
Q Consensus 470 ~~~~l~~l~~~~~~~~~g~~~~~~g~-------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~------------ 530 (714)
+|... +.++...++ ++++++++++++.++|+|..+|+.+..++.+.|+-
T Consensus 203 AW~~R------------~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~ 270 (349)
T 3q7a_A 203 AWGWR------------WYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYT 270 (349)
T ss_dssp HHHHH------------HHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGT
T ss_pred HHHHH------------HHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccc
Confidence 99865 888888886 79999999999999999999999999999887764
Q ss_pred --------HHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHhccHHHHHHHHHHHH-HhCCCCHHHHHHHH
Q 005108 531 --------ERSVEDSNQALLIQ------PNYTKALLRRAASNSKLEKWADAVRDFEVLR-RELPDDNEIAESLF 589 (714)
Q Consensus 531 --------~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~g~~~eA~~~~~~al-~~~p~~~~~~~~L~ 589 (714)
.+-.+.+.+.+... +....++..++.+|...|+.++|++.|+.+. +.||-....+....
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~ 344 (349)
T 3q7a_A 271 ASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRR 344 (349)
T ss_dssp C--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred cccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHH
Confidence 33333333333322 4678899999999999999999999999987 67887766665543
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.69 E-value=1.3e-16 Score=145.26 Aligned_cols=125 Identities=15% Similarity=0.101 Sum_probs=115.8
Q ss_pred HcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhH
Q 005108 398 KLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNV 477 (714)
Q Consensus 398 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l 477 (714)
..+++-.+-..++++++++|++ ..+++.+|.++...|++++|+..|++++.++|+++.+|..+
T Consensus 14 ~l~~~~~~~~~l~~al~l~p~~--------------~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~l--- 76 (151)
T 3gyz_A 14 AVIDAINSGATLKDINAIPDDM--------------MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGL--- 76 (151)
T ss_dssp HHHHHHHTSCCTGGGCCSCHHH--------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH---
T ss_pred HHHHHHHCCCCHHHHhCCCHHH--------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH---
Confidence 3334444556788999999998 88999999999999999999999999999999999999877
Q ss_pred HHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH
Q 005108 478 KLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYT 548 (714)
Q Consensus 478 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 548 (714)
|.++...|++++|+.+|+++++++|+++.+|+++|.+|..+|++++|+..|++++++.|+..
T Consensus 77 ---------g~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 77 ---------AAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp ---------HHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred ---------HHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999865
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=5.2e-15 Score=151.88 Aligned_cols=237 Identities=8% Similarity=-0.047 Sum_probs=187.6
Q ss_pred ccchhhhhcCCCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC-C-CHHHHHHHHHHHH
Q 005108 227 NANVNRNRGGICGGDAEELKRMGNELYRKG-CFGEALSMYDKAISLAPRNAAFRSNRAAALTGL-G-RIGEAVKECEEAV 303 (714)
Q Consensus 227 ~~~~~~~~~~~~p~~~~~~~~~g~~~~~~g-~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~-g-~~~~A~~~~~~al 303 (714)
..........++|++..+|+.++.++...| .+++++.++++++..+|++..+|..++.++..+ + +++++++.+++++
T Consensus 73 AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L 152 (349)
T 3q7a_A 73 ALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSL 152 (349)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 333334445689999999999999999999 599999999999999999999999999999998 8 9999999999999
Q ss_pred hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCC
Q 005108 304 RLDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGAD 383 (714)
Q Consensus 304 ~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~ 383 (714)
+.+|.+..+|...+.++...+.++.+
T Consensus 153 ~~dpkNy~AW~~R~wvl~~l~~~~~~------------------------------------------------------ 178 (349)
T 3q7a_A 153 LPDPKNYHTWAYLHWLYSHFSTLGRI------------------------------------------------------ 178 (349)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHHTTCC------------------------------------------------------
T ss_pred HhCCCCHHHHHHHHHHHHHhcccccc------------------------------------------------------
Confidence 99999999999999888765533210
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCc-------HHHHHHH
Q 005108 384 FSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGR-------FENAVTA 456 (714)
Q Consensus 384 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-------~~~A~~~ 456 (714)
.. ..+++++++++++++.+|.+ ..+|..++.++...++ +++++++
T Consensus 179 -~~-------------~~~~eELe~~~k~I~~dp~N--------------~SAW~~R~~lL~~l~~~~~~~~~~~eELe~ 230 (349)
T 3q7a_A 179 -SE-------------AQWGSELDWCNEMLRVDGRN--------------NSAWGWRWYLRVSRPGAETSSRSLQDELIY 230 (349)
T ss_dssp -CH-------------HHHHHHHHHHHHHHHHCTTC--------------HHHHHHHHHHHTTSTTCCCCHHHHHHHHHH
T ss_pred -ch-------------hhHHHHHHHHHHHHHhCCCC--------------HHHHHHHHHHHHhccccccchHHHHHHHHH
Confidence 00 01247788888888889988 8899999999999887 7999999
Q ss_pred HHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcC--------------------HHHHHHHHHHhhccC------
Q 005108 457 AEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSER--------------------FTEACQAYGEGLRFD------ 510 (714)
Q Consensus 457 ~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~--------------------~~~A~~~~~~al~~~------ 510 (714)
+++++.++|++..+|..+ ..++...|+ ..+-.+.+.+.+...
T Consensus 231 ~~~aI~~~P~n~SaW~Yl------------r~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (349)
T 3q7a_A 231 ILKSIHLIPHNVSAWNYL------------RGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTP 298 (349)
T ss_dssp HHHHHHHCTTCHHHHHHH------------HHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCC
T ss_pred HHHHHHhCCCCHHHHHHH------------HHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccC
Confidence 999999999999999877 334444443 233333333333332
Q ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH-HhCCCCHHHHHHHHHH
Q 005108 511 PSNSVLYCNRAACWFKLGQWERSVEDSNQAL-LIQPNYTKALLRRAAS 557 (714)
Q Consensus 511 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al-~~~p~~~~~~~~la~~ 557 (714)
+..+.++..++.+|.+.|+.++|+++|+.+. +.||-....|..++..
T Consensus 299 ~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~~~ 346 (349)
T 3q7a_A 299 LPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRRRE 346 (349)
T ss_dssp SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHHHh
Confidence 4678899999999999999999999999987 6788777777655543
|
| >3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B | Back alignment and structure |
|---|
Probab=99.68 E-value=1.3e-16 Score=137.03 Aligned_cols=100 Identities=26% Similarity=0.512 Sum_probs=93.6
Q ss_pred eeehhhhHHhhhccCCCceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCcchhhhCCccccceEEEEeCCe
Q 005108 613 EEVSSLEQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAHAENVRIVPTFKIYKNGS 692 (714)
Q Consensus 613 ~~i~~~e~~~~~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~ 692 (714)
....+.++|..++...++++++||++||++|+.+.|.++++..+++++.|+.||+++.+++++.|+|.++||+++|++|+
T Consensus 9 ~~~~~~~~f~~~~~~~k~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~G~ 88 (109)
T 3f3q_A 9 TQFKTASEFDSAIAQDKLVVVDFYATWCGPCKMIAPMIEKFSEQYPQADFYKLDVDELGDVAQKNEVSAMPTLLLFKNGK 88 (109)
T ss_dssp EECCSHHHHHHHTTSSSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTCHHHHHHTTCCSSSEEEEEETTE
T ss_pred cCCCCHHHHHHHHhcCCEEEEEEECCcCHhHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHcCCCccCEEEEEECCE
Confidence 34556678888888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEcCCCHHHHHHHHhhh
Q 005108 693 RMKEIVCPSRDMLEHSVRHY 712 (714)
Q Consensus 693 ~~~~~~g~~~~~l~~~~~~~ 712 (714)
.+.++.|.+.++|+++|+++
T Consensus 89 ~~~~~~G~~~~~l~~~i~~~ 108 (109)
T 3f3q_A 89 EVAKVVGANPAAIKQAIAAN 108 (109)
T ss_dssp EEEEEESSCHHHHHHHHHHH
T ss_pred EEEEEeCCCHHHHHHHHHhh
Confidence 99999999889999999886
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=99.68 E-value=1e-17 Score=175.13 Aligned_cols=184 Identities=13% Similarity=0.130 Sum_probs=152.5
Q ss_pred CCHHHHHHHHHH----HHHcCCCCCHHHHHHHHHHHH------------HcCCHHHHHHHhhccccCCCCCCCchhhhhh
Q 005108 365 GDWKSALREGDA----AIAAGADFSPQLSMCRVEALL------------KLHQLEDAESSLSNIPKIEPSTVSSSQTRFF 428 (714)
Q Consensus 365 g~~~~Al~~~~~----al~~~p~~~~~~~~~la~~~~------------~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 428 (714)
+.|++|+..++. ++.+.|++ .|..++.... .++++++|+..|+++++.+|..
T Consensus 79 ~~~e~al~~~~~Ge~~~l~i~p~~---ayg~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~~~p~~--------- 146 (336)
T 1p5q_A 79 YGLERAIQRMEKGEHSIVYLKPSY---AFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQ--------- 146 (336)
T ss_dssp HHHHHHHTTCCTTCEEEEEECTTT---TTTTTCBGGGTBCSSCCEEEEEEEEEEECCCCGGGCCHHHHHHH---------
T ss_pred hHHHHHHhcCCCCCeEEEEECCcc---ccCcCCCCccCCCCCCeEEEEEEEeecccccchhcCCHHHHHHH---------
Confidence 345666666666 66666653 2222333222 4566777777777777766665
Q ss_pred hhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCC---------------HHHHHHHHhHHHHHHHHHHHhHHhhC
Q 005108 429 GMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRN---------------VEVAVLLNNVKLVARARARGNDLFKS 493 (714)
Q Consensus 429 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~l~~l~~~~~~~~~g~~~~~~ 493 (714)
+.+++.+|.+++..|++++|+..|++++.++|++ ..++. ++|.++.+.
T Consensus 147 -----a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~------------nla~~~~~~ 209 (336)
T 1p5q_A 147 -----STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHL------------NLAMCHLKL 209 (336)
T ss_dssp -----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHH------------HHHHHHHHT
T ss_pred -----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHH------------HHHHHHHHc
Confidence 7899999999999999999999999999999998 34444 459999999
Q ss_pred cCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHH-HHHHH
Q 005108 494 ERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADA-VRDFE 572 (714)
Q Consensus 494 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA-~~~~~ 572 (714)
|++++|+.+|+++++++|++..+|+++|.+|..+|++++|+.+|+++++++|++..++..++.++..+|++++| ...|+
T Consensus 210 g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~ 289 (336)
T 1p5q_A 210 QAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYA 289 (336)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999 55777
Q ss_pred HHHHh
Q 005108 573 VLRRE 577 (714)
Q Consensus 573 ~al~~ 577 (714)
+++..
T Consensus 290 ~~~~~ 294 (336)
T 1p5q_A 290 NMFER 294 (336)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77643
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.67 E-value=3.1e-16 Score=155.81 Aligned_cols=229 Identities=14% Similarity=0.076 Sum_probs=171.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH-------HHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHH
Q 005108 243 EELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNR-------AAALTGLGRIGEAVKECEEAVRLDPNYWRAHQR 315 (714)
Q Consensus 243 ~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~l-------a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~ 315 (714)
..++..|.-+ ..+++.+|++.|.++++++|....+|..+ +.++..++++.+++..+++.+.+.|....+++.
T Consensus 8 ~~~~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~ 86 (282)
T 4f3v_A 8 ASLFESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIA 86 (282)
T ss_dssp HHHHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEE
T ss_pred HHHHHHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhc
Confidence 4455566665 57788888888888888888888888887 677777777777777777777777776554443
Q ss_pred HHHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 005108 316 LGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEA 395 (714)
Q Consensus 316 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~ 395 (714)
+.-+| |+. ..--.....+...++.+
T Consensus 87 ~~g~y---~~~----------------------------------------------------~~~v~~r~dl~LayA~~ 111 (282)
T 4f3v_A 87 IGGLY---GDI----------------------------------------------------TYPVTSPLAITMGFAAC 111 (282)
T ss_dssp CCTTT---CCC----------------------------------------------------EEECSSHHHHHHHHHHH
T ss_pred cCCcc---ccc----------------------------------------------------ccccCCHhHHHHHHHHH
Confidence 11111 000 00000113445557888
Q ss_pred HHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCC--HHHHHH
Q 005108 396 LLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRN--VEVAVL 473 (714)
Q Consensus 396 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~ 473 (714)
+...|++++|.+.|..++...|.+ . ..+.+|.++++.+++++|+.+|+++....+.. ..+++.
T Consensus 112 L~~~g~y~eA~~~l~~~~~~~p~~--------------~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~ 176 (282)
T 4f3v_A 112 EAAQGNYADAMEALEAAPVAGSEH--------------L-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVA 176 (282)
T ss_dssp HHHHTCHHHHHHHHTSSCCTTCHH--------------H-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHhcCCch--------------H-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHH
Confidence 999999999999999999888876 5 88999999999999999999999887653221 224444
Q ss_pred HHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccC--CC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH
Q 005108 474 LNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFD--PS-NSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKA 550 (714)
Q Consensus 474 l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 550 (714)
+ |.++..+|++++|+.+|++++.-. |. ...+++++|.++.++|+.++|...|++++..+|+ ..+
T Consensus 177 L------------G~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~ 243 (282)
T 4f3v_A 177 H------------GVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKV 243 (282)
T ss_dssp H------------HHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHH
T ss_pred H------------HHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHH
Confidence 4 999999999999999999998654 55 5679999999999999999999999999999999 776
Q ss_pred HHHHH
Q 005108 551 LLRRA 555 (714)
Q Consensus 551 ~~~la 555 (714)
+..|.
T Consensus 244 ~~aL~ 248 (282)
T 4f3v_A 244 AAALK 248 (282)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 66553
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.9e-16 Score=163.42 Aligned_cols=174 Identities=13% Similarity=0.095 Sum_probs=130.3
Q ss_pred HHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHH
Q 005108 394 EALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVL 473 (714)
Q Consensus 394 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 473 (714)
.+|...|++++|+.+|.+++++.+.. ......+.++..+|.+|..+|++++|+.+|++++++.+......
T Consensus 44 ~~~~~~g~~~~A~~~~~~al~~~~~~--------~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~-- 113 (307)
T 2ifu_A 44 VAFKNAKQLEQAKDAYLQEAEAHANN--------RSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPD-- 113 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHH--
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHH--
Confidence 34444455555555555554443221 00112256788999999999999999999999998754321110
Q ss_pred HHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCC------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC
Q 005108 474 LNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSN------SVLYCNRAACWFKLGQWERSVEDSNQALLIQPNY 547 (714)
Q Consensus 474 l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 547 (714)
..+..+.++|.+|.. |++++|+.+|++++++.+.. ..++.++|.+|..+|++++|+.+|++++++.|++
T Consensus 114 ----~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 188 (307)
T 2ifu_A 114 ----TAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEM 188 (307)
T ss_dssp ----HHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred ----HHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Confidence 011223356999999 99999999999999987643 5789999999999999999999999999986543
Q ss_pred ------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHH
Q 005108 548 ------TKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNE 583 (714)
Q Consensus 548 ------~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~ 583 (714)
..+++.++.++..+|++++|+.+|++++ ++|+...
T Consensus 189 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~ 229 (307)
T 2ifu_A 189 ENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSG 229 (307)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTT
T ss_pred CChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCC
Confidence 3578899999999999999999999999 9997654
|
| >3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C* | Back alignment and structure |
|---|
Probab=99.66 E-value=1.4e-16 Score=138.39 Aligned_cols=100 Identities=27% Similarity=0.512 Sum_probs=92.4
Q ss_pred eeehhhhHHhhhcc--CCCceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCcchhhhCCccccceEEEEeC
Q 005108 613 EEVSSLEQFRAAVS--LPGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAHAENVRIVPTFKIYKN 690 (714)
Q Consensus 613 ~~i~~~e~~~~~i~--~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~ 690 (714)
....+.++|..++. ..++++|+||++||++|+.+.|.++++..+++++.|+.||+++.+++++.|+|.++||+++|++
T Consensus 14 ~~~~t~~~f~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~ 93 (116)
T 3qfa_C 14 KQIESKTAFQEALDAAGDKLVVVDFSATWCGPSKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASECEVKSMPTFQFFKK 93 (116)
T ss_dssp BCCCCHHHHHHHHHHHTTSCEEEEEECTTCHHHHHHHHHHHHHHTTCTTSEEEEEETTTTHHHHHHTTCCSSSEEEEESS
T ss_pred cCCCCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHcCCccccEEEEEeC
Confidence 34456678888887 6789999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEcCCCHHHHHHHHhhh
Q 005108 691 GSRMKEIVCPSRDMLEHSVRHY 712 (714)
Q Consensus 691 G~~~~~~~g~~~~~l~~~~~~~ 712 (714)
|+++.++.|.+.+.|+++|+++
T Consensus 94 G~~~~~~~G~~~~~l~~~l~~~ 115 (116)
T 3qfa_C 94 GQKVGEFSGANKEKLEATINEL 115 (116)
T ss_dssp SSEEEEEESCCHHHHHHHHHHH
T ss_pred CeEEEEEcCCCHHHHHHHHHHh
Confidence 9999999999999999999875
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=99.66 E-value=2.8e-16 Score=142.10 Aligned_cols=132 Identities=14% Similarity=0.170 Sum_probs=119.2
Q ss_pred HHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHH
Q 005108 455 TAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSV 534 (714)
Q Consensus 455 ~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 534 (714)
..|++++.++|++...++.+ |..++..|++++|+..|+++++.+|+++.+|+.+|.+|..+|++++|+
T Consensus 5 ~~l~~al~~~p~~~~~~~~~------------a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~ 72 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYAL------------GFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQAL 72 (142)
T ss_dssp ----CCTTCCHHHHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hhHHHHHcCCHHHHHHHHHH------------HHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHH
Confidence 56788899999888887765 999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhh
Q 005108 535 EDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAESLFHAQVSLKKS 598 (714)
Q Consensus 535 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~L~~~~~~l~~~ 598 (714)
.+|+++++++|+++.+++.+|.+|..+|++++|+.+|+++++++|++++......++...++..
T Consensus 73 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~~l 136 (142)
T 2xcb_A 73 QSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLEAV 136 (142)
T ss_dssp HHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999988877777776666543
|
| >1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.66 E-value=3.2e-16 Score=134.10 Aligned_cols=101 Identities=26% Similarity=0.481 Sum_probs=91.8
Q ss_pred eeeehhhhHHhhhc--cCCCceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCcchhhhCCccccceEEEEe
Q 005108 612 VEEVSSLEQFRAAV--SLPGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAHAENVRIVPTFKIYK 689 (714)
Q Consensus 612 ~~~i~~~e~~~~~i--~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~ 689 (714)
+..+.+.++|...+ ...++++++||++||++|+.+.|.++++..+++++.|+.||+++.+++++.|+|.++||+++|+
T Consensus 3 v~~i~~~~~~~~~~~~~~~~~v~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~ 82 (107)
T 1gh2_A 3 VKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQCQGTAATNNISATPTFQFFR 82 (107)
T ss_dssp EEEECSGGGHHHHHHHTTTSCEEEEEECSSCHHHHHHHHHHHHHHHHCTTSEEEEEETTTSHHHHHHTTCCSSSEEEEEE
T ss_pred eEEecCHHHHHHHHHhCCCCEEEEEEECCCChhhHHHHHHHHHHHHHCCCcEEEEEECccCHHHHHhcCCCcccEEEEEE
Confidence 34566677888877 4678999999999999999999999999999989999999999999999999999999999999
Q ss_pred CCeEEEEEcCCCHHHHHHHHhhh
Q 005108 690 NGSRMKEIVCPSRDMLEHSVRHY 712 (714)
Q Consensus 690 ~G~~~~~~~g~~~~~l~~~~~~~ 712 (714)
+|+.+.++.|...++|+++|+++
T Consensus 83 ~G~~~~~~~G~~~~~l~~~l~~~ 105 (107)
T 1gh2_A 83 NKVRIDQYQGADAVGLEEKIKQH 105 (107)
T ss_dssp TTEEEEEEESSCHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCHHHHHHHHHHh
Confidence 99999999999667799999875
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.65 E-value=7e-14 Score=157.71 Aligned_cols=341 Identities=9% Similarity=-0.028 Sum_probs=231.7
Q ss_pred cccchhhhhcCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHH
Q 005108 226 ENANVNRNRGGICGGDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGR---IGEAVKECEEA 302 (714)
Q Consensus 226 ~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~a 302 (714)
+....+......+|.|...|..++..+...++++.|...|++++...|.....|...+......++ ++.+...|+++
T Consensus 50 d~i~~lE~~l~~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRa 129 (679)
T 4e6h_A 50 DVIGKLNDMIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARC 129 (679)
T ss_dssp CHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHH
Confidence 334344444557899999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred HhcCC--CcHHHHHHHHHHHHHcCCH--------HHHHHHHHhhcC--CC-Ch---HHHHHHHHHHHHHHHhHHHHHcCC
Q 005108 303 VRLDP--NYWRAHQRLGSLLVRLGQV--------ENARRHLCLSGQ--QA-DP---TEVHRLQVVEKHLSKCTDARKVGD 366 (714)
Q Consensus 303 l~~~p--~~~~a~~~la~~~~~~g~~--------~~A~~~~~~al~--~~-~~---~~~~~l~~~~~~~~~a~~~~~~g~ 366 (714)
+...| .+.+.|..+.......++. +.....|+.++. .. ++ ..|.....+.........+...++
T Consensus 130 l~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~ 209 (679)
T 4e6h_A 130 LSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQR 209 (679)
T ss_dssp TCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHH
T ss_pred HHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhH
Confidence 99984 5778888887766665543 334478888775 22 22 222211111100000000112334
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-------------HHcCCHHHHHHH-------------------------
Q 005108 367 WKSALREGDAAIAAGADFSPQLSMCRVEAL-------------LKLHQLEDAESS------------------------- 408 (714)
Q Consensus 367 ~~~Al~~~~~al~~~p~~~~~~~~~la~~~-------------~~~g~~~~A~~~------------------------- 408 (714)
++.+..+|++++..-......+|......- ....+|+.|...
T Consensus 210 ~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~ 289 (679)
T 4e6h_A 210 VQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATES 289 (679)
T ss_dssp HHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTT
T ss_pred HHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhc
Confidence 566667777776531122222221111000 001122223322
Q ss_pred ------------------------------------------hhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHH
Q 005108 409 ------------------------------------------LSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMA 446 (714)
Q Consensus 409 ------------------------------------------~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 446 (714)
|++++...|.+ ..+|+..+..+..
T Consensus 290 ~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~--------------~~lW~~ya~~~~~ 355 (679)
T 4e6h_A 290 NLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFA--------------PEIWFNMANYQGE 355 (679)
T ss_dssp TSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTC--------------HHHHHHHHHHHHH
T ss_pred cCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCC--------------HHHHHHHHHHHHh
Confidence 33333333332 5678899999999
Q ss_pred hCcHHHHH-HHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhcc-----------CCC--
Q 005108 447 LGRFENAV-TAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRF-----------DPS-- 512 (714)
Q Consensus 447 ~g~~~~A~-~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~-----------~p~-- 512 (714)
.|+.++|+ ..|++++...|.+...|..+ +......|++++|.+.|+++++. .|.
T Consensus 356 ~~~~~~a~r~il~rAi~~~P~s~~Lwl~~------------a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~ 423 (679)
T 4e6h_A 356 KNTDSTVITKYLKLGQQCIPNSAVLAFSL------------SEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNE 423 (679)
T ss_dssp HSCCTTHHHHHHHHHHHHCTTCHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCH
T ss_pred cCcHHHHHHHHHHHHHHhCCCCHHHHHHH------------HHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcch
Confidence 99999997 99999999999998888766 77788888888888888888864 242
Q ss_pred ---------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHhCCCC
Q 005108 513 ---------NSVLYCNRAACWFKLGQWERSVEDSNQALLI-QPNYTKALLRRAASNSKLEK-WADAVRDFEVLRRELPDD 581 (714)
Q Consensus 513 ---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~-~~eA~~~~~~al~~~p~~ 581 (714)
...+|..++....+.|+.+.|...|.+|++. .+....+|...+.+..+.++ ++.|...|+.+++..|++
T Consensus 424 ~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~ 503 (679)
T 4e6h_A 424 SAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATD 503 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTC
T ss_pred hhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCc
Confidence 3457788888888888888888888888876 43445667767776666654 888888888888888888
Q ss_pred HHHHHHHHHHH
Q 005108 582 NEIAESLFHAQ 592 (714)
Q Consensus 582 ~~~~~~L~~~~ 592 (714)
+.++..+....
T Consensus 504 ~~~w~~y~~fe 514 (679)
T 4e6h_A 504 GEYINKYLDFL 514 (679)
T ss_dssp HHHHHHHHHHH
T ss_pred hHHHHHHHHHH
Confidence 88775555443
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=2e-15 Score=169.94 Aligned_cols=165 Identities=13% Similarity=0.094 Sum_probs=138.6
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHH
Q 005108 364 VGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQI 443 (714)
Q Consensus 364 ~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~ 443 (714)
.|++++|+..|+++++.+|+. ...+..+|.+|...|++++|++.|+++++++|++ ..+++.+|.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~--------------~~~~~~lg~~ 66 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQD-FVAWLMLADAELGMGDTTAGEMAVQRGLALHPGH--------------PEAVARLGRV 66 (568)
T ss_dssp -------------------CC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTC--------------HHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--------------HHHHHHHHHH
Confidence 478999999999999999974 6777789999999999999999999999999998 8899999999
Q ss_pred HHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHH
Q 005108 444 EMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAAC 523 (714)
Q Consensus 444 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 523 (714)
+..+|++++|+++|+++++++|++..++..+ |.++...|++++|+++|+++++++|++..++.++|.+
T Consensus 67 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l------------a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 134 (568)
T 2vsy_A 67 RWTQQRHAEAAVLLQQASDAAPEHPGIALWL------------GHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNW 134 (568)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHhcCCCCHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 9999999999999999999999999988766 9999999999999999999999999999999999999
Q ss_pred HHHh---CCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 005108 524 WFKL---GQWERSVEDSNQALLIQPNYTKALLRRA 555 (714)
Q Consensus 524 ~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~la 555 (714)
+..+ |++++|++.|+++++.+|++...+..++
T Consensus 135 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 135 RRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLS 169 (568)
T ss_dssp HHHTTCCTTHHHHHHHHHHHHHHTCCCSCHHHHTT
T ss_pred HHHhhccccHHHHHHHHHHHHhcCCcccChHHHhC
Confidence 9999 9999999999999999999888777666
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=99.64 E-value=3.9e-16 Score=140.47 Aligned_cols=121 Identities=12% Similarity=0.109 Sum_probs=110.2
Q ss_pred HHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCC-------CHH-----HHHHHHHHHHHhCCHHHHHHHHHHHHHh-
Q 005108 477 VKLVARARARGNDLFKSERFTEACQAYGEGLRFDPS-------NSV-----LYCNRAACWFKLGQWERSVEDSNQALLI- 543 (714)
Q Consensus 477 l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-------~~~-----~~~~la~~~~~~g~~~~A~~~~~~al~~- 543 (714)
+..+..+.++|..+++.|+|++|+..|+++|+++|+ +.. +|.++|.++.++|+|++|+.+|++++++
T Consensus 8 ~~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~ 87 (159)
T 2hr2_A 8 VVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYF 87 (159)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhh
Confidence 344556677899999999999999999999999999 444 9999999999999999999999999999
Q ss_pred ------CCCCHHHH----HHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhh
Q 005108 544 ------QPNYTKAL----LRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAESLFHAQVSLKK 597 (714)
Q Consensus 544 ------~p~~~~~~----~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~L~~~~~~l~~ 597 (714)
+|++..+| +++|.++..+|++++|+..|+++++++|++..+...+..+...++.
T Consensus 88 n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~~~~ 151 (159)
T 2hr2_A 88 NRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVAID 151 (159)
T ss_dssp HHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHHHH
T ss_pred hccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 99999999 9999999999999999999999999999998888877777766654
|
| >1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.64 E-value=5.3e-16 Score=136.55 Aligned_cols=101 Identities=29% Similarity=0.449 Sum_probs=93.8
Q ss_pred eeeehhhhHHhhhccCCCceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCcchhhhCCccccceEEEEeCC
Q 005108 612 VEEVSSLEQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAHAENVRIVPTFKIYKNG 691 (714)
Q Consensus 612 ~~~i~~~e~~~~~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G 691 (714)
+..+...++|...+...++++|+||++||++|+.+.|.++++..+++++.|+.||+++.+++++.|+|.++||+++|++|
T Consensus 21 v~~l~~~~~f~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~i~~~G 100 (125)
T 1r26_A 21 VVDVYSVEQFRNIMSEDILTVAWFTAVWCGPCKTIERPMEKIAYEFPTVKFAKVDADNNSEIVSKCRVLQLPTFIIARSG 100 (125)
T ss_dssp CEEECCHHHHHHHHHSSSCEEEEEECTTCHHHHHTHHHHHHHHHHCTTSEEEEEETTTCHHHHHHTTCCSSSEEEEEETT
T ss_pred eEECCCHHHHHHHHccCCEEEEEEECCcCHhHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHcCCCcccEEEEEeCC
Confidence 55667768888888778899999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEcCCCHHHHHHHHhhh
Q 005108 692 SRMKEIVCPSRDMLEHSVRHY 712 (714)
Q Consensus 692 ~~~~~~~g~~~~~l~~~~~~~ 712 (714)
+.+.++.|.+.++|+++|+++
T Consensus 101 ~~~~~~~G~~~~~l~~~l~~~ 121 (125)
T 1r26_A 101 KMLGHVIGANPGMLRQKLRDI 121 (125)
T ss_dssp EEEEEEESSCHHHHHHHHHHH
T ss_pred eEEEEEeCCCHHHHHHHHHHH
Confidence 999999999889999999875
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.64 E-value=2.7e-15 Score=141.05 Aligned_cols=162 Identities=17% Similarity=0.121 Sum_probs=140.7
Q ss_pred HHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhh
Q 005108 353 KHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLS 432 (714)
Q Consensus 353 ~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 432 (714)
..+.++..+...|++++|+..|+++++.+|++ ...+..+|.++...|++++|+..|++++..+| +
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~-~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~------------- 72 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSR-GDVKLAKADCLLETKQFELAQELLATIPLEYQ-D------------- 72 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTS-HHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-C-------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc-HHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-C-------------
Confidence 35667778999999999999999999999984 67777899999999999999999999999999 6
Q ss_pred hHHHHHHHHHHHH-HhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCC
Q 005108 433 EAYTFFVRAQIEM-ALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDP 511 (714)
Q Consensus 433 ~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p 511 (714)
...+..++.+.. ..++..+|+..|+++++.+|++..+++.+ |.++...|++++|+..|+++++.+|
T Consensus 73 -~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~l------------a~~~~~~g~~~~A~~~~~~~l~~~p 139 (176)
T 2r5s_A 73 -NSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACEL------------AVQYNQVGRDEEALELLWNILKVNL 139 (176)
T ss_dssp -HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred -hHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHH------------HHHHHHcccHHHHHHHHHHHHHhCc
Confidence 334444444432 33344568999999999999999999877 9999999999999999999999998
Q ss_pred CC--HHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 005108 512 SN--SVLYCNRAACWFKLGQWERSVEDSNQALL 542 (714)
Q Consensus 512 ~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~ 542 (714)
+. ..++.+++.++..+|++++|+..|++++.
T Consensus 140 ~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 140 GAQDGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp TTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred ccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 75 67999999999999999999999999875
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=99.64 E-value=5.5e-17 Score=169.63 Aligned_cols=175 Identities=21% Similarity=0.270 Sum_probs=152.9
Q ss_pred cCCHHHHHHHhhc----cccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHH------------HhCcHHHHHHHHHHHhc
Q 005108 399 LHQLEDAESSLSN----IPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEM------------ALGRFENAVTAAEKAGQ 462 (714)
Q Consensus 399 ~g~~~~A~~~~~~----al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~------------~~g~~~~A~~~~~~al~ 462 (714)
.+.+++|+..++. ++.+.|.. +|..+|.... .++++++|+..|++++.
T Consensus 78 ~~~~e~al~~~~~Ge~~~l~i~p~~----------------ayg~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~ 141 (336)
T 1p5q_A 78 PYGLERAIQRMEKGEHSIVYLKPSY----------------AFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSE 141 (336)
T ss_dssp CHHHHHHHTTCCTTCEEEEEECTTT----------------TTTTTCBGGGTBCSSCCEEEEEEEEEEECCCCGGGCCHH
T ss_pred chHHHHHHhcCCCCCeEEEEECCcc----------------ccCcCCCCccCCCCCCeEEEEEEEeecccccchhcCCHH
Confidence 4578899999999 89888875 1222222221 46778888888888888
Q ss_pred cCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCC---------------HHHHHHHHHHHHHh
Q 005108 463 IDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSN---------------SVLYCNRAACWFKL 527 (714)
Q Consensus 463 ~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~la~~~~~~ 527 (714)
..|++...+..+ |.+++..|+|++|+.+|+++++++|.+ ..+|+++|.+|.++
T Consensus 142 ~~p~~a~~~~~~------------g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~ 209 (336)
T 1p5q_A 142 EKLEQSTIVKER------------GTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKL 209 (336)
T ss_dssp HHHHHHHHHHHH------------HHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH------------HHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 877777776655 999999999999999999999999998 69999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhccc
Q 005108 528 GQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAESLFHAQVSLKKSRGE 601 (714)
Q Consensus 528 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~L~~~~~~l~~~~~~ 601 (714)
|++++|+.+|+++++++|++..+++++|.+|..+|++++|+.+|+++++++|++..++..+..++..+++....
T Consensus 210 g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 210 QAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999888776544
|
| >2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A | Back alignment and structure |
|---|
Probab=99.64 E-value=4.6e-16 Score=134.64 Aligned_cols=102 Identities=27% Similarity=0.526 Sum_probs=94.0
Q ss_pred ceeeehhhhHHhhhccCCCceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCcchhhhCCccccceEEEEeC
Q 005108 611 EVEEVSSLEQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAHAENVRIVPTFKIYKN 690 (714)
Q Consensus 611 ~~~~i~~~e~~~~~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~ 690 (714)
.+..+.+.+.+..++...+++++.||++||++|+.+.|.++++..+++++.|+.||+++.++++++|+|.++||+++|++
T Consensus 13 ~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~ 92 (114)
T 2oe3_A 13 SITKLTNLTEFRNLIKQNDKLVIDFYATWCGPCKMMQPHLTKLIQAYPDVRFVKCDVDESPDIAKECEVTAMPTFVLGKD 92 (114)
T ss_dssp GSCBCCSHHHHHHHHHHCSEEEEEEECTTCHHHHHTHHHHHHHHHHCTTSEEEEEETTTCHHHHHHTTCCSBSEEEEEET
T ss_pred heeecCCHHHHHHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHCCCCcccEEEEEeC
Confidence 45567777888888888889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEcCCCHHHHHHHHhhh
Q 005108 691 GSRMKEIVCPSRDMLEHSVRHY 712 (714)
Q Consensus 691 G~~~~~~~g~~~~~l~~~~~~~ 712 (714)
|+.+.++.|...++|+++|+++
T Consensus 93 G~~~~~~~G~~~~~l~~~l~~~ 114 (114)
T 2oe3_A 93 GQLIGKIIGANPTALEKGIKDL 114 (114)
T ss_dssp TEEEEEEESSCHHHHHHHHHTC
T ss_pred CeEEEEEeCCCHHHHHHHHHhC
Confidence 9999999999888999998764
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.63 E-value=1e-14 Score=129.04 Aligned_cols=134 Identities=22% Similarity=0.395 Sum_probs=127.9
Q ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHH
Q 005108 436 TFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSV 515 (714)
Q Consensus 436 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~ 515 (714)
+++.+|.++...|++++|+..++++++..|.+...+..+ |.++...|++++|+.+|+++++..|.+..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~------------a~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 70 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNL------------GNAYYKQGDYDEAIEYYQKALELDPRSAE 70 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH------------HHHHHHHTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHH------------HHHHHHhcCHHHHHHHHHHHHHHCCCchH
Confidence 578899999999999999999999999999998887765 89999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Q 005108 516 LYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDD 581 (714)
Q Consensus 516 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~ 581 (714)
+++.+|.++...|++++|+..++++++..|++..+++.+|.++...|++++|+.+|+++++.+|++
T Consensus 71 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 136 (136)
T 2fo7_A 71 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136 (136)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999863
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.7e-14 Score=140.00 Aligned_cols=186 Identities=11% Similarity=-0.012 Sum_probs=160.6
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhC
Q 005108 369 SALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALG 448 (714)
Q Consensus 369 ~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 448 (714)
+|+..|+++.+.+ .+..++.+|.+|...+++++|+.+|+++.+. .+ +.+++.+|.+|.. +
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~--------------~~a~~~lg~~y~~-~ 63 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GD--------------GDALALLAQLKIR-N 63 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TC--------------HHHHHHHHHHTTS-S
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CC--------------HHHHHHHHHHHHc-C
Confidence 5778888888863 5677888999999999999999999999875 34 6789999999998 7
Q ss_pred ----cHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhh----CcCHHHHHHHHHHhhccCC--CCHHHHH
Q 005108 449 ----RFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFK----SERFTEACQAYGEGLRFDP--SNSVLYC 518 (714)
Q Consensus 449 ----~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~----~g~~~~A~~~~~~al~~~p--~~~~~~~ 518 (714)
++++|+.+|+++.+ +.++.+++.+ |.+|.. .+++++|+.+|+++++..+ .++.+++
T Consensus 64 g~~~~~~~A~~~~~~A~~--~g~~~a~~~L------------g~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~ 129 (212)
T 3rjv_A 64 PQQADYPQARQLAEKAVE--AGSKSGEIVL------------ARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQM 129 (212)
T ss_dssp TTSCCHHHHHHHHHHHHH--TTCHHHHHHH------------HHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH--CCCHHHHHHH------------HHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHH
Confidence 89999999999965 5677777766 888988 8999999999999999987 3599999
Q ss_pred HHHHHHHH----hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh-c-----cHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005108 519 NRAACWFK----LGQWERSVEDSNQALLIQPNYTKALLRRAASNSKL-E-----KWADAVRDFEVLRRELPDDNEIAESL 588 (714)
Q Consensus 519 ~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g-----~~~eA~~~~~~al~~~p~~~~~~~~L 588 (714)
++|.+|.. .+++++|+.+|++++++ +.++.+++.||.+|..- | ++++|+.+|+++.+.. +.+....|
T Consensus 130 ~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g--~~~A~~~l 206 (212)
T 3rjv_A 130 LLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG--FDTGCEEF 206 (212)
T ss_dssp HHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT--CHHHHHHH
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC--CHHHHHHH
Confidence 99999999 89999999999999998 66788999999999764 3 8999999999999984 56666655
Q ss_pred HHH
Q 005108 589 FHA 591 (714)
Q Consensus 589 ~~~ 591 (714)
..+
T Consensus 207 ~~l 209 (212)
T 3rjv_A 207 DRI 209 (212)
T ss_dssp HHH
T ss_pred HHh
Confidence 543
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.63 E-value=5.6e-15 Score=130.27 Aligned_cols=115 Identities=26% Similarity=0.459 Sum_probs=108.6
Q ss_pred HHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005108 481 ARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSK 560 (714)
Q Consensus 481 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 560 (714)
..+..+|..++..|+|++|+..|+++++++|+++.+|+++|.+|.++|++++|+..|+++++++|++..+++.+|.++..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 34456699999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHh
Q 005108 561 LEKWADAVRDFEVLRREL------PDDNEIAESLFHAQVSL 595 (714)
Q Consensus 561 ~g~~~eA~~~~~~al~~~------p~~~~~~~~L~~~~~~l 595 (714)
+|++++|+..|+++++++ |++..+...+..+...+
T Consensus 85 ~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~l 125 (126)
T 3upv_A 85 VKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQR 125 (126)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHC
T ss_pred HhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHhh
Confidence 999999999999999999 99999999988876553
|
| >3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} SCOP: c.47.1.0 PDB: 1xbs_A | Back alignment and structure |
|---|
Probab=99.63 E-value=5.2e-16 Score=141.10 Aligned_cols=101 Identities=15% Similarity=0.261 Sum_probs=91.3
Q ss_pred eeeehhhhHHhhhc--cCCCceEEEeecCCCccccccchHHHHHHhhCCC-cEEEEEecccCcchhhhCCccccceEEEE
Q 005108 612 VEEVSSLEQFRAAV--SLPGVSVVHFKSASNLHCKQISPYVETLCGRYPS-INFLKVDIDESPGVAHAENVRIVPTFKIY 688 (714)
Q Consensus 612 ~~~i~~~e~~~~~i--~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~-~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~ 688 (714)
+..+.+.+.|...+ ...++++|+||++||++|+.+.|.++++..++++ +.|++||+|+.+++++.|+|.++||++++
T Consensus 5 l~~i~~~~~~~~~i~~~~~k~vlv~F~a~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~ 84 (149)
T 3gix_A 5 LPKLTSKKEVDQAIKSTAEKVLVLRFGRDEDPVCLQLDDILSKTSSDLSKMAAIYLVDVDQTAVYTQYFDISYIPSTVFF 84 (149)
T ss_dssp CCEECSHHHHHHHHHHCCSSEEEEEEECTTSHHHHHHHHHHHHHHTTTTTTEEEEEEETTTCCHHHHHTTCCSSSEEEEE
T ss_pred eeecCCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHccCceEEEEEECCcCHHHHHHcCCCccCeEEEE
Confidence 34455667788777 4578999999999999999999999999999987 99999999999999999999999999999
Q ss_pred eCCeEE---------EEEcC-C-CHHHHHHHHhhh
Q 005108 689 KNGSRM---------KEIVC-P-SRDMLEHSVRHY 712 (714)
Q Consensus 689 ~~G~~~---------~~~~g-~-~~~~l~~~~~~~ 712 (714)
++|+.+ .++.| + +.++|.+.|+.+
T Consensus 85 ~~G~~v~~~~g~~~~~~~~G~~~~~~~l~~~l~~~ 119 (149)
T 3gix_A 85 FNGQHMKVDYGSPDHTKFVGSFKTKQDFIDLIEVI 119 (149)
T ss_dssp ETTEEEEEECSSSCCSCEESCCSSHHHHHHHHHHH
T ss_pred ECCeEEEeecCCCCCCeEeeecCCHHHHHHHHHHH
Confidence 999999 99999 7 999999998875
|
| >2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A | Back alignment and structure |
|---|
Probab=99.63 E-value=6.5e-16 Score=132.82 Aligned_cols=98 Identities=17% Similarity=0.258 Sum_probs=88.5
Q ss_pred ehhhhHHhhhccCCCceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCcchhhhCCccccceEEEEeCCeEE
Q 005108 615 VSSLEQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRM 694 (714)
Q Consensus 615 i~~~e~~~~~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~ 694 (714)
+.+.+.| ..+...+.+++.||++||++|+.+.|.++++...++++.|+.||+++.+++++.|+|.++||+++|++|+.+
T Consensus 7 ~~~~~~f-~~~~~~~~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~G~~v 85 (110)
T 2l6c_A 7 ITTEAGM-AHFEGLSDAIVFFHKNLCPHCKNMEKVLDKFGARAPQVAISSVDSEARPELMKELGFERVPTLVFIRDGKVA 85 (110)
T ss_dssp CGGGCSH-HHHTTCSEEEEEEECSSCSTHHHHHHHHHHHHTTCTTSCEEEEEGGGCHHHHHHTTCCSSCEEEEEESSSEE
T ss_pred cCCHHHH-HHHHcCCCEEEEEECCCCHhHHHHHHHHHHHHHHCCCcEEEEEcCcCCHHHHHHcCCcccCEEEEEECCEEE
Confidence 3444566 555567889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCC-CHHHHHHHHhhhc
Q 005108 695 KEIVCP-SRDMLEHSVRHYS 713 (714)
Q Consensus 695 ~~~~g~-~~~~l~~~~~~~~ 713 (714)
.++.|. +.++|+.+|+.+.
T Consensus 86 ~~~~G~~~~~~l~~~~~~~~ 105 (110)
T 2l6c_A 86 KVFSGIMNPRELQALYASIH 105 (110)
T ss_dssp EEEESCCCHHHHHHHHHTC-
T ss_pred EEEcCCCCHHHHHHHHHHHh
Confidence 999998 9999999998763
|
| >3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ... | Back alignment and structure |
|---|
Probab=99.63 E-value=9.4e-16 Score=130.60 Aligned_cols=100 Identities=28% Similarity=0.561 Sum_probs=92.3
Q ss_pred eeehhhhHHhhhcc--CCCceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCcchhhhCCccccceEEEEeC
Q 005108 613 EEVSSLEQFRAAVS--LPGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAHAENVRIVPTFKIYKN 690 (714)
Q Consensus 613 ~~i~~~e~~~~~i~--~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~ 690 (714)
..+.+.+++...+. .++++++.||++||++|+.+.|.++++..+++++.|+.||+++.+++++.|+|.++||+++|++
T Consensus 3 ~~i~~~~~~~~~l~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~ 82 (105)
T 3m9j_A 3 KQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASESEVKSMPTFQFFKK 82 (105)
T ss_dssp EECCSHHHHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHSTTSEEEEEETTTCHHHHHHTTCCBSSEEEEEET
T ss_pred EEcCCHHHHHHHHHhcCCCeEEEEEECCCChhhHHHHHHHHHHHHHccCeEEEEEEhhhhHHHHHHcCCCcCcEEEEEEC
Confidence 34666677887776 6789999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEcCCCHHHHHHHHhhh
Q 005108 691 GSRMKEIVCPSRDMLEHSVRHY 712 (714)
Q Consensus 691 G~~~~~~~g~~~~~l~~~~~~~ 712 (714)
|+.+.++.|.+.+.|+++|+++
T Consensus 83 g~~~~~~~g~~~~~l~~~l~~~ 104 (105)
T 3m9j_A 83 GQKVGEFSGANKEKLEATINEL 104 (105)
T ss_dssp TEEEEEEESSCHHHHHHHHHHH
T ss_pred CeEEEEEeCCCHHHHHHHHHHh
Confidence 9999999999999999999875
|
| >3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.3e-15 Score=131.48 Aligned_cols=99 Identities=21% Similarity=0.364 Sum_probs=86.9
Q ss_pred eehhhhHHhhhccC---CCceEEEeecCCCccccccchHHHHHHhh--CCCcEEEEEecccCcchhhhCCccccceEEEE
Q 005108 614 EVSSLEQFRAAVSL---PGVSVVHFKSASNLHCKQISPYVETLCGR--YPSINFLKVDIDESPGVAHAENVRIVPTFKIY 688 (714)
Q Consensus 614 ~i~~~e~~~~~i~~---~~~~vv~f~a~~c~~C~~~~p~l~~l~~~--~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~ 688 (714)
.+...+.|...+.. .++++++||++||++|+.+.|.++++..+ ++++.|+.||+++.+++++.|+|.++||+++|
T Consensus 4 ~i~~~~~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~ 83 (112)
T 3d6i_A 4 EINDQEQFTYLTTTAAGDKLIVLYFHTSWAEPCKALKQVFEAISNEPSNSNVSFLSIDADENSEISELFEISAVPYFIII 83 (112)
T ss_dssp EECCHHHHHHHHTTTTTTCCEEEEEECCC--CHHHHHHHHHHHHHCGGGTTSEEEEEETTTCHHHHHHTTCCSSSEEEEE
T ss_pred ccCCHHHHHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHhcCCCCEEEEEEecccCHHHHHHcCCCcccEEEEE
Confidence 45555677777764 77999999999999999999999999998 67899999999999999999999999999999
Q ss_pred eCCeEEEEEcCCCHHHHHHHHhhh
Q 005108 689 KNGSRMKEIVCPSRDMLEHSVRHY 712 (714)
Q Consensus 689 ~~G~~~~~~~g~~~~~l~~~~~~~ 712 (714)
++|+.+.++.|...++|+++|+++
T Consensus 84 ~~G~~~~~~~G~~~~~l~~~l~~~ 107 (112)
T 3d6i_A 84 HKGTILKELSGADPKEYVSLLEDC 107 (112)
T ss_dssp ETTEEEEEECSCCHHHHHHHHHHH
T ss_pred ECCEEEEEecCCCHHHHHHHHHHH
Confidence 999999999999767799998875
|
| >1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.62 E-value=8.1e-16 Score=135.28 Aligned_cols=102 Identities=26% Similarity=0.470 Sum_probs=92.9
Q ss_pred ceeeehhhhHHhhhccC----CCceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCcchhhhCCccccceEE
Q 005108 611 EVEEVSSLEQFRAAVSL----PGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAHAENVRIVPTFK 686 (714)
Q Consensus 611 ~~~~i~~~e~~~~~i~~----~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~ 686 (714)
.+..+.+.++|...+.. .++++++||++||++|+.+.|.++++..+++++.|+.||+++.+++++.|+|.++||++
T Consensus 17 ~v~~l~~~~~~~~~l~~~~~~~k~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~ 96 (124)
T 1xfl_A 17 QVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPNVLFLKVDTDELKSVASDWAIQAMPTFM 96 (124)
T ss_dssp CCEEESSHHHHHHHHHHHHHTTCEEEEEEECTTCHHHHHHHHHHHHHHHHCSSEEEEEEETTTSHHHHHHTTCCSSSEEE
T ss_pred cEEEeCCHHHHHHHHHHhhhcCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCcEEEEEECccCHHHHHHcCCCccCEEE
Confidence 45666677777776653 67999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCeEEEEEcCCCHHHHHHHHhhh
Q 005108 687 IYKNGSRMKEIVCPSRDMLEHSVRHY 712 (714)
Q Consensus 687 ~~~~G~~~~~~~g~~~~~l~~~~~~~ 712 (714)
+|++|+++.++.|.+.++|+++|+++
T Consensus 97 ~~~~G~~~~~~~G~~~~~l~~~l~~~ 122 (124)
T 1xfl_A 97 FLKEGKILDKVVGAKKDELQSTIAKH 122 (124)
T ss_dssp EEETTEEEEEEESCCHHHHHHHHHHH
T ss_pred EEECCEEEEEEeCCCHHHHHHHHHHh
Confidence 99999999999999999999999875
|
| >3iv4_A Putative oxidoreductase; APC23140, meticillin-resistant staphylococcus aureus, oxidor thioredoxin fold, structural genomics, PSI-2; HET: MSE; 1.50A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=99.62 E-value=3e-16 Score=130.81 Aligned_cols=102 Identities=15% Similarity=0.122 Sum_probs=90.7
Q ss_pred cccceeeehhhhHHhhhccCCCceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCcc----hhhhCCccc-c
Q 005108 608 FGGEVEEVSSLEQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPG----VAHAENVRI-V 682 (714)
Q Consensus 608 ~~~~~~~i~~~e~~~~~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~----l~~~~~v~~-~ 682 (714)
|.+.+..+.+.++|++++...++++|+|+++||++|+++.|.++++..+ +++.|++||+++.++ +|..|+|++ .
T Consensus 4 ~~~~~~~i~s~e~f~~ii~~~~~vvi~khatwCgpc~~~~~~~e~~~~~-~~v~~~~vdVde~r~~Sn~IA~~~~V~h~s 82 (112)
T 3iv4_A 4 FQGVAIKLSSIDQFEQVIEENKYVFVLKHSETCPISANAYDQFNKFLYE-RDMDGYYLIVQQERDLSDYIAKKTNVKHES 82 (112)
T ss_dssp GGGCEEECCSHHHHHHHHHHCSEEEEEEECTTCHHHHHHHHHHHHHHHH-HTCCEEEEEGGGGHHHHHHHHHHHTCCCCS
T ss_pred hhcceeecCCHHHHHHHHhcCCCEEEEEECCcCHhHHHHHHHHHHHhcc-CCceEEEEEeecCchhhHHHHHHhCCccCC
Confidence 4567788899999999998889999999999999999999999999886 789999999999866 899999995 9
Q ss_pred ceEEEEeCCeEEEEEc-CC-CHHHHHHHHh
Q 005108 683 PTFKIYKNGSRMKEIV-CP-SRDMLEHSVR 710 (714)
Q Consensus 683 Pt~~~~~~G~~~~~~~-g~-~~~~l~~~~~ 710 (714)
||+++||||+.+.+.. +. +.+.|++.|+
T Consensus 83 Pq~il~k~G~~v~~~SH~~I~~~~l~~~~e 112 (112)
T 3iv4_A 83 PQAFYFVNGEMVWNRDHGDINVSSLAQAEE 112 (112)
T ss_dssp SEEEEEETTEEEEEEEGGGCSHHHHHHHTC
T ss_pred CeEEEEECCEEEEEeeccccCHHHHHHhhC
Confidence 9999999999998754 55 9898887653
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=1.1e-14 Score=148.60 Aligned_cols=164 Identities=18% Similarity=0.158 Sum_probs=151.2
Q ss_pred HHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhh
Q 005108 352 EKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGML 431 (714)
Q Consensus 352 ~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 431 (714)
+.++.++..+...|++++|+..|+++++.+|++ ...+..+|.++...|++++|+..|++++..+|+.
T Consensus 118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~-~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~------------ 184 (287)
T 3qou_A 118 ELXAQQAMQLMQESNYTDALPLLXDAWQLSNQN-GEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDT------------ 184 (287)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSC-HHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSH------------
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcc-hhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcch------------
Confidence 345677888999999999999999999999985 6677789999999999999999999999999965
Q ss_pred hhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCC
Q 005108 432 SEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDP 511 (714)
Q Consensus 432 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p 511 (714)
...+...+..+...++.++|+..|++++..+|++..+++.+ |.++...|++++|+..|+++++.+|
T Consensus 185 --~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~l------------a~~l~~~g~~~~A~~~l~~~l~~~p 250 (287)
T 3qou_A 185 --RYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQL------------ALQLHQVGRNEEALELLFGHLRXDL 250 (287)
T ss_dssp --HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred --HHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHH------------HHHHHHcccHHHHHHHHHHHHhccc
Confidence 56677777788899999999999999999999999999877 9999999999999999999999999
Q ss_pred CC--HHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 005108 512 SN--SVLYCNRAACWFKLGQWERSVEDSNQALL 542 (714)
Q Consensus 512 ~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~ 542 (714)
++ ..++.+++.+|..+|+.++|+..|++++.
T Consensus 251 ~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 251 TAADGQTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp TGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 98 89999999999999999999999999875
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.62 E-value=6e-15 Score=136.51 Aligned_cols=124 Identities=27% Similarity=0.427 Sum_probs=113.6
Q ss_pred HHHHHHHHHhHHhhCcCHHHHHHHHHHhhcc------------------CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 005108 479 LVARARARGNDLFKSERFTEACQAYGEGLRF------------------DPSNSVLYCNRAACWFKLGQWERSVEDSNQA 540 (714)
Q Consensus 479 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~------------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 540 (714)
.+..+..+|..+++.|+|++|+..|++++++ +|.+..+|+++|.||.++|+|++|+.+|+++
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a 89 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV 89 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3445567799999999999999999999998 6777899999999999999999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHhhhhcccc
Q 005108 541 LLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDN-EIAESLFHAQVSLKKSRGEE 602 (714)
Q Consensus 541 l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~-~~~~~L~~~~~~l~~~~~~~ 602 (714)
++++|++..+|+.+|.+|..+|++++|+.+|+++++++|++. .+...|..+...++..+.++
T Consensus 90 l~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~~~~ 152 (162)
T 3rkv_A 90 LKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAEKKADS 152 (162)
T ss_dssp HHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHTTSS
T ss_pred HhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999 77888888888887665544
|
| >1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A | Back alignment and structure |
|---|
Probab=99.61 E-value=1.2e-15 Score=131.57 Aligned_cols=102 Identities=33% Similarity=0.511 Sum_probs=92.9
Q ss_pred ceeeehhhhHHhhhccC----CCceEEEeecCCCccccccchHHHHHHhhCC-CcEEEEEecccCcchhhhCCccccceE
Q 005108 611 EVEEVSSLEQFRAAVSL----PGVSVVHFKSASNLHCKQISPYVETLCGRYP-SINFLKVDIDESPGVAHAENVRIVPTF 685 (714)
Q Consensus 611 ~~~~i~~~e~~~~~i~~----~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~-~~~~~~vd~d~~~~l~~~~~v~~~Pt~ 685 (714)
.+..+.+.++|...+.. .+++++.||++||++|+.+.|.++++..+++ ++.|+.||+++.+++++.|+|.++||+
T Consensus 3 ~v~~i~~~~~~~~~l~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~ 82 (112)
T 1ep7_A 3 SVIVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDAVAAVAEAAGITAMPTF 82 (112)
T ss_dssp SEEEECSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTTHHHHHHHTCCBSSEE
T ss_pred cEEEecCHHHHHHHHHhhcccCCeEEEEEECCCCHHHHHHHHHHHHHHHHcCCCeEEEEEECCchHHHHHHcCCCcccEE
Confidence 45566677788877765 7799999999999999999999999999998 799999999999999999999999999
Q ss_pred EEEeCCeEEEEEcCCCHHHHHHHHhhh
Q 005108 686 KIYKNGSRMKEIVCPSRDMLEHSVRHY 712 (714)
Q Consensus 686 ~~~~~G~~~~~~~g~~~~~l~~~~~~~ 712 (714)
++|++|+.+.++.|.+.++|+++|+++
T Consensus 83 ~~~~~G~~~~~~~G~~~~~l~~~l~~~ 109 (112)
T 1ep7_A 83 HVYKDGVKADDLVGASQDKLKALVAKH 109 (112)
T ss_dssp EEEETTEEEEEEESCCHHHHHHHHHHH
T ss_pred EEEECCeEEEEEcCCCHHHHHHHHHHH
Confidence 999999999999999999999999875
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=1.3e-15 Score=138.72 Aligned_cols=120 Identities=15% Similarity=0.159 Sum_probs=111.7
Q ss_pred HHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHH
Q 005108 406 ESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARA 485 (714)
Q Consensus 406 ~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~ 485 (714)
...|++++.++|.+ ...++.+|.++...|++++|+..|++++.++|++..+|..+
T Consensus 7 ~~~~~~al~~~p~~--------------~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l----------- 61 (148)
T 2vgx_A 7 GGTIAMLNEISSDT--------------LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGL----------- 61 (148)
T ss_dssp CCSHHHHTTCCHHH--------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH-----------
T ss_pred hhhHHHHHcCCHhh--------------HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHH-----------
Confidence 34577788888887 78899999999999999999999999999999999999876
Q ss_pred HHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHH
Q 005108 486 RGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKAL 551 (714)
Q Consensus 486 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 551 (714)
|.++...|++++|+.+|+++++++|+++.+++++|.+|..+|++++|+..|+++++++|+++...
T Consensus 62 -g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 126 (148)
T 2vgx_A 62 -GACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFX 126 (148)
T ss_dssp -HHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGH
T ss_pred -HHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcch
Confidence 99999999999999999999999999999999999999999999999999999999999876543
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.61 E-value=9.3e-15 Score=129.18 Aligned_cols=110 Identities=25% Similarity=0.362 Sum_probs=98.8
Q ss_pred HHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC-------HHHHHH
Q 005108 481 ARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNY-------TKALLR 553 (714)
Q Consensus 481 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~ 553 (714)
..++++|..+++.|+|++|+.+|+++++++|+++.+|+++|.+|.++|++++|++.|+++++++|++ ..++++
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 3455679999999999999999999999999999999999999999999999999999999998765 358899
Q ss_pred HHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005108 554 RAASNSKLEKWADAVRDFEVLRRELPDDNEIAESLFHA 591 (714)
Q Consensus 554 la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~L~~~ 591 (714)
+|.++..+|++++|+++|+++++..|+ +++...|.++
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l~~l 125 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSEFRD-PELVKKVKEL 125 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSCC-HHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCcC-HHHHHHHHHh
Confidence 999999999999999999999999885 6666555443
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=99.60 E-value=1.3e-14 Score=147.51 Aligned_cols=196 Identities=18% Similarity=0.156 Sum_probs=149.1
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 005108 239 GGDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGS 318 (714)
Q Consensus 239 p~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~ 318 (714)
|.++..++.+|..++..|+|++|+.+|+++++.+|++..+++++|.+|..+|++++|+..|+++++++|++..+++.+|.
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHhhcCCC--ChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 005108 319 LLVRLGQVENARRHLCLSGQQA--DPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEAL 396 (714)
Q Consensus 319 ~~~~~g~~~~A~~~~~~al~~~--~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~ 396 (714)
+|..+|++++|+..|++++... ++..... .+...+ ...++...........+. ...+...++..+
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~--~~~~~~----------~~~~~~~~~~~~~~~~~~-~~~i~~~l~~l~ 147 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKEQRLNFGD--DIPSAL----------RIAKKKRWNSIEERRIHQ-ESELHSYLTRLI 147 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCCCS--HHHHHH----------HHHHHHHHHHHHHTCCCC-CCHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchhhHHH--HHHHHH----------HHHHHHHHHHHHHHHHhh-hHHHHHHHHHHH
Confidence 9999999999999999987511 1000000 000000 011111222222223333 233344344443
Q ss_pred HHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHh-CcHHHHHHHHHHHhcc
Q 005108 397 LKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMAL-GRFENAVTAAEKAGQI 463 (714)
Q Consensus 397 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~ 463 (714)
.|++++|++.++++++.+|.+ ......++.++... +++++|.++|+++.+.
T Consensus 148 --~~~~~~A~~~~~~al~~~p~~--------------~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 148 --AAERERELEECQRNHEGHEDD--------------GHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp --HHHHHHHHTTTSGGGTTTSCH--------------HHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred --HHHHHHHHHHHHhhhccccch--------------hhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 799999999999999999987 45555566666665 7789999999998764
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=99.60 E-value=4.9e-15 Score=133.80 Aligned_cols=129 Identities=15% Similarity=0.170 Sum_probs=114.3
Q ss_pred HHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHH
Q 005108 407 SSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARAR 486 (714)
Q Consensus 407 ~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~ 486 (714)
..|++++.++|.+ ...++.+|..+...|++++|+..|++++..+|++..+|..+
T Consensus 5 ~~l~~al~~~p~~--------------~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l------------ 58 (142)
T 2xcb_A 5 GTLAMLRGLSEDT--------------LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGL------------ 58 (142)
T ss_dssp ----CCTTCCHHH--------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH------------
T ss_pred hhHHHHHcCCHHH--------------HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHH------------
Confidence 5678888888887 78899999999999999999999999999999999999876
Q ss_pred HhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 005108 487 GNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKL 561 (714)
Q Consensus 487 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 561 (714)
|.++...|++++|+.+|+++++++|+++.+++++|.+|..+|++++|+..|+++++++|+++.....+..+...+
T Consensus 59 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l 133 (142)
T 2xcb_A 59 GACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAML 133 (142)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999998876655554444433
|
| >2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A | Back alignment and structure |
|---|
Probab=99.60 E-value=1.8e-15 Score=138.57 Aligned_cols=102 Identities=27% Similarity=0.466 Sum_probs=93.3
Q ss_pred ceeeehhhhHHhhhccC--CCceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCcchhhhCCccccceEEEE
Q 005108 611 EVEEVSSLEQFRAAVSL--PGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAHAENVRIVPTFKIY 688 (714)
Q Consensus 611 ~~~~i~~~e~~~~~i~~--~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~ 688 (714)
.+..+.+.+.|..++.. .++++|+||++||++|+.+.|.++++..+++++.|+.||+++.+++++.|+|.++||+++|
T Consensus 13 ~v~~l~~~~~~~~~~~~~~~~~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~ 92 (153)
T 2wz9_A 13 AVEEVGSAGQFEELLRLKAKSLLVVHFWAPWAPQCAQMNEVMAELAKELPQVSFVKLEAEGVPEVSEKYEISSVPTFLFF 92 (153)
T ss_dssp CSEEECSHHHHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTSHHHHHHTTCCSSSEEEEE
T ss_pred CeEEcCCHHHHHHHHHhcCCCeEEEEEECCCCHhHHHHHHHHHHHHHHcCCeEEEEEECCCCHHHHHHcCCCCCCEEEEE
Confidence 45566667788887766 7899999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCeEEEEEcCCCHHHHHHHHhhh
Q 005108 689 KNGSRMKEIVCPSRDMLEHSVRHY 712 (714)
Q Consensus 689 ~~G~~~~~~~g~~~~~l~~~~~~~ 712 (714)
++|+++.++.|.+.++|.++|+++
T Consensus 93 ~~G~~~~~~~G~~~~~l~~~i~~~ 116 (153)
T 2wz9_A 93 KNSQKIDRLDGAHAPELTKKVQRH 116 (153)
T ss_dssp ETTEEEEEEESSCHHHHHHHHHHH
T ss_pred ECCEEEEEEeCCCHHHHHHHHHHH
Confidence 999999999999888899999875
|
| >2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica} | Back alignment and structure |
|---|
Probab=99.60 E-value=2.9e-15 Score=127.24 Aligned_cols=99 Identities=23% Similarity=0.397 Sum_probs=90.3
Q ss_pred eehhhhHHhhhcc--CCCceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCcchhhhCCccccceEEEEeCC
Q 005108 614 EVSSLEQFRAAVS--LPGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAHAENVRIVPTFKIYKNG 691 (714)
Q Consensus 614 ~i~~~e~~~~~i~--~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G 691 (714)
.+.+.+.|...+. ..+++++.||++||++|+.+.|.++++..+++++.|+.||+++.+++++.|+|.++||+++|++|
T Consensus 3 ~i~~~~~~~~~l~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g 82 (104)
T 2vim_A 3 VLATAADLEKLINENKGRLIVVDFFAQWCGPCRNIAPKVEALAKEIPEVEFAKVDVDQNEEAAAKYSVTAMPTFVFIKDG 82 (104)
T ss_dssp ECCSHHHHHHHHHTTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTCHHHHHHTTCCSSSEEEEEETT
T ss_pred ecCCHHHHHHHHHhcCCCeEEEEEECCCCHHHHHhhHHHHHHHHHCCCCEEEEEeccCCHHHHHHcCCccccEEEEEeCC
Confidence 3455567777776 56799999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEcCCCHHHHHHHHhhh
Q 005108 692 SRMKEIVCPSRDMLEHSVRHY 712 (714)
Q Consensus 692 ~~~~~~~g~~~~~l~~~~~~~ 712 (714)
+.+.++.|.+.++|+++|+++
T Consensus 83 ~~~~~~~G~~~~~l~~~l~~~ 103 (104)
T 2vim_A 83 KEVDRFSGANETKLRETITRH 103 (104)
T ss_dssp EEEEEEESSCHHHHHHHHHHH
T ss_pred cEEEEEeCCCHHHHHHHHHhh
Confidence 999999999999999999875
|
| >1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.59 E-value=2.4e-15 Score=129.73 Aligned_cols=100 Identities=32% Similarity=0.574 Sum_probs=92.3
Q ss_pred eeehhhhHHhhhccCCCceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCcchhhhCCccccceEEEEeCCe
Q 005108 613 EEVSSLEQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAHAENVRIVPTFKIYKNGS 692 (714)
Q Consensus 613 ~~i~~~e~~~~~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~ 692 (714)
....+.++|..++...+++++.||++||++|+.+.|.++++..+++++.|+.||+++.+++++.|+|.++||+++|++|+
T Consensus 11 ~~~~~~~~f~~~~~~~k~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~G~ 90 (112)
T 1syr_A 11 KIVTSQAEFDSIISQNELVIVDFFAEWCGPCKRIAPFYEECSKTYTKMVFIKVDVDEVSEVTEKENITSMPTFKVYKNGS 90 (112)
T ss_dssp EEECSHHHHHHHHHHCSEEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTTHHHHHHTTCCSSSEEEEEETTE
T ss_pred EEECCHHHHHHHHccCCeEEEEEECCCCHHHHHHHHHHHHHHHHcCCCEEEEEECCCCHHHHHHcCCCcccEEEEEECCc
Confidence 34455678888887788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEcCCCHHHHHHHHhhh
Q 005108 693 RMKEIVCPSRDMLEHSVRHY 712 (714)
Q Consensus 693 ~~~~~~g~~~~~l~~~~~~~ 712 (714)
.+.++.|.+.++|+++|+++
T Consensus 91 ~~~~~~G~~~~~l~~~l~~~ 110 (112)
T 1syr_A 91 SVDTLLGANDSALKQLIEKY 110 (112)
T ss_dssp EEEEEESCCHHHHHHHHHTT
T ss_pred EEEEEeCCCHHHHHHHHHHh
Confidence 99999999999999999875
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.59 E-value=4.8e-15 Score=139.26 Aligned_cols=135 Identities=18% Similarity=0.206 Sum_probs=121.5
Q ss_pred HHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHH
Q 005108 444 EMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAAC 523 (714)
Q Consensus 444 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 523 (714)
+...|++++|+..|+++++.+|++..++..+ |.++...|++++|+.+|+++++++|+++.++..+|.+
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l------------g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 87 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANPQNSEQWALL------------GEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATV 87 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCCSCHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHH
T ss_pred hhhccCHHHHHHHHHHHHHhCCCcHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 3467899999999999999999999998876 9999999999999999999999999999999999999
Q ss_pred -HHHhCCH--HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 005108 524 -WFKLGQW--ERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAESLFH 590 (714)
Q Consensus 524 -~~~~g~~--~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~L~~ 590 (714)
+...|++ ++|+..|+++++++|++..+++.+|.+|..+|++++|+.+|+++++++|++......+..
T Consensus 88 l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 157 (177)
T 2e2e_A 88 LYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLVES 157 (177)
T ss_dssp HHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHHHHH
T ss_pred HHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHHHHH
Confidence 8899999 999999999999999999999999999999999999999999999999998665544433
|
| >3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=99.59 E-value=3.5e-15 Score=128.48 Aligned_cols=96 Identities=19% Similarity=0.343 Sum_probs=89.0
Q ss_pred hhhHHhhhc-cCCCceEEEeecCCCccccccchHHHHHHhhCCC-cEEEEEecccCcchhhhCCccccceEEEEeCCeEE
Q 005108 617 SLEQFRAAV-SLPGVSVVHFKSASNLHCKQISPYVETLCGRYPS-INFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRM 694 (714)
Q Consensus 617 ~~e~~~~~i-~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~-~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~ 694 (714)
+.++|...+ ...+++++.||++||++|+.+.|.++++..++++ +.|+.||+++.+++++.|+|.++||+++|++|+.+
T Consensus 10 ~~~~~~~~~~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~g~~~ 89 (111)
T 3gnj_A 10 DTNTFEQLIYDEGKACLVMFSRKNCHVCQKVTPVLEELRLNYEESFGFYYVDVEEEKTLFQRFSLKGVPQILYFKDGEYK 89 (111)
T ss_dssp CHHHHHHHHTTSCCCEEEEEECSSCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTCHHHHHHTTCCSSCEEEEEETTEEE
T ss_pred CHHHHHHHHHhcCCEEEEEEeCCCChhHHHHHHHHHHHHHHcCCceEEEEEECCcChhHHHhcCCCcCCEEEEEECCEEE
Confidence 446777766 6778999999999999999999999999999985 99999999999999999999999999999999999
Q ss_pred EEEcCC-CHHHHHHHHhhh
Q 005108 695 KEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 695 ~~~~g~-~~~~l~~~~~~~ 712 (714)
.++.|. +.+.|+++|+++
T Consensus 90 ~~~~g~~~~~~l~~~l~~~ 108 (111)
T 3gnj_A 90 GKMAGDVEDDEVEQMIADV 108 (111)
T ss_dssp EEEESSCCHHHHHHHHHHH
T ss_pred EEEeccCCHHHHHHHHHHH
Confidence 999999 999999999875
|
| >2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A | Back alignment and structure |
|---|
Probab=99.59 E-value=2.9e-15 Score=130.35 Aligned_cols=100 Identities=26% Similarity=0.429 Sum_probs=91.2
Q ss_pred eeeehhhhHHhhhcc--CCCceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCcchhhhCCccccceEEEEe
Q 005108 612 VEEVSSLEQFRAAVS--LPGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAHAENVRIVPTFKIYK 689 (714)
Q Consensus 612 ~~~i~~~e~~~~~i~--~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~ 689 (714)
+..+...+.|...+. ..++++++||++||++|+.+.|.++++..++ ++.|+.||+++.+++++.|+|.++||+++|+
T Consensus 15 v~~l~~~~~~~~~l~~~~~~~~vv~f~a~wC~~C~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~ 93 (117)
T 2xc2_A 15 LIELKQDGDLESLLEQHKNKLVVVDFFATWCGPCKTIAPLFKELSEKY-DAIFVKVDVDKLEETARKYNISAMPTFIAIK 93 (117)
T ss_dssp EEECCSTTHHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHTTS-SSEEEEEETTTSHHHHHHTTCCSSSEEEEEE
T ss_pred eEEeCCHHHHHHHHHhCCCCEEEEEEECCCCHhHHHHhHHHHHHHHHc-CcEEEEEECCccHHHHHHcCCCccceEEEEe
Confidence 455666677777776 5779999999999999999999999999998 8999999999999999999999999999999
Q ss_pred CCeEEEEEcCCCHHHHHHHHhhh
Q 005108 690 NGSRMKEIVCPSRDMLEHSVRHY 712 (714)
Q Consensus 690 ~G~~~~~~~g~~~~~l~~~~~~~ 712 (714)
+|+.+.++.|.+.++|+++|+++
T Consensus 94 ~G~~~~~~~G~~~~~l~~~l~~~ 116 (117)
T 2xc2_A 94 NGEKVGDVVGASIAKVEDMIKKF 116 (117)
T ss_dssp TTEEEEEEESSCHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCHHHHHHHHHHh
Confidence 99999999999989999999875
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.8e-14 Score=133.56 Aligned_cols=115 Identities=22% Similarity=0.388 Sum_probs=106.8
Q ss_pred HHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccH
Q 005108 485 ARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKW 564 (714)
Q Consensus 485 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 564 (714)
.+|.+++..|+|++|+.+|+++++++|++..+|+++|.+|..+|++++|+.+|+++++++|++..+|+.+|.+|..+|++
T Consensus 16 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~ 95 (164)
T 3sz7_A 16 SEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADY 95 (164)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCH
Confidence 45999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHhhhhc
Q 005108 565 ADAVRDFEVLRRELPDDNE--IAESLFHAQVSLKKSR 599 (714)
Q Consensus 565 ~eA~~~~~~al~~~p~~~~--~~~~L~~~~~~l~~~~ 599 (714)
++|+.+|+++++++|++.. +...+..++..+++..
T Consensus 96 ~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~ 132 (164)
T 3sz7_A 96 KGAKEAYEKGIEAEGNGGSDAMKRGLETTKRKIEEAN 132 (164)
T ss_dssp HHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999987 5666666666665544
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.58 E-value=7.2e-13 Score=149.49 Aligned_cols=318 Identities=10% Similarity=-0.037 Sum_probs=235.3
Q ss_pred CCCCCcHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHCCCH--------HHHHHHHHHH
Q 005108 236 GICGGDAEELKRMGNELYRKGC---FGEALSMYDKAISLAP--RNAAFRSNRAAALTGLGRI--------GEAVKECEEA 302 (714)
Q Consensus 236 ~~~p~~~~~~~~~g~~~~~~g~---~~~Al~~~~~al~~~p--~~~~~~~~la~~~~~~g~~--------~~A~~~~~~a 302 (714)
...|.....|...+......++ ++.+..+|++++...| .++.+|..........++. +...+.|++|
T Consensus 94 ~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErA 173 (679)
T 4e6h_A 94 DRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVV 173 (679)
T ss_dssp HHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHH
T ss_pred HHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHH
Confidence 4678889999999999999999 9999999999999884 6778888777665555543 3344788888
Q ss_pred Hh---c-CCCcHHHHHHHHHHHH---------HcCCHHHHHHHHHhhcCCCCh-H--HHHHHHHHH--------------
Q 005108 303 VR---L-DPNYWRAHQRLGSLLV---------RLGQVENARRHLCLSGQQADP-T--EVHRLQVVE-------------- 352 (714)
Q Consensus 303 l~---~-~p~~~~a~~~la~~~~---------~~g~~~~A~~~~~~al~~~~~-~--~~~~l~~~~-------------- 352 (714)
+. . ++.....|..+..... .+++.+.+..+|++++..+.. . .+......+
T Consensus 174 l~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e 253 (679)
T 4e6h_A 174 VDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGE 253 (679)
T ss_dssp HHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHH
T ss_pred HHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHH
Confidence 76 3 6767777777765543 344577888999998873221 1 110000000
Q ss_pred --HHHHHhHH-----------------------------------------------HHHcC--------CHHHHHHHHH
Q 005108 353 --KHLSKCTD-----------------------------------------------ARKVG--------DWKSALREGD 375 (714)
Q Consensus 353 --~~~~~a~~-----------------------------------------------~~~~g--------~~~~Al~~~~ 375 (714)
..+..+.. +.+.. ..+.....|+
T Consensus 254 ~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye 333 (679)
T 4e6h_A 254 LSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYM 333 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHH
Confidence 00000000 00000 1223456799
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH-HHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHH
Q 005108 376 AAIAAGADFSPQLSMCRVEALLKLHQLEDAE-SSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAV 454 (714)
Q Consensus 376 ~al~~~p~~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 454 (714)
+++...|. .+.+|...+..+...|+.++|. .+|++++...|.+ ...|...+..+...|++++|.
T Consensus 334 ~aL~~~p~-~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s--------------~~Lwl~~a~~ee~~~~~e~aR 398 (679)
T 4e6h_A 334 QAAQHVCF-APEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNS--------------AVLAFSLSEQYELNTKIPEIE 398 (679)
T ss_dssp HHHHHTTT-CHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTC--------------HHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHcCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCC--------------HHHHHHHHHHHHHhCCHHHHH
Confidence 99999887 6888888999999999999997 9999999999987 778999999999999999999
Q ss_pred HHHHHHhccC-----------CCC-----------HHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhcc-CC
Q 005108 455 TAAEKAGQID-----------PRN-----------VEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRF-DP 511 (714)
Q Consensus 455 ~~~~~al~~~-----------p~~-----------~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~-~p 511 (714)
++|++++... |.+ ..+|..+ +....+.|..+.|...|.+|++. .+
T Consensus 399 ~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y------------~~~erR~~~l~~AR~vf~~A~~~~~~ 466 (679)
T 4e6h_A 399 TTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVY------------MNTMKRIQGLAASRKIFGKCRRLKKL 466 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHH------------HHHHHHHHCHHHHHHHHHHHHHTGGG
T ss_pred HHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHhcCC
Confidence 9999999752 432 2244443 66667778899999999999887 44
Q ss_pred CCHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Q 005108 512 SNSVLYCNRAACWFKLGQ-WERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPD 580 (714)
Q Consensus 512 ~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~ 580 (714)
....+|...|.+..+.++ ++.|.++|+++++..|+++..+..++......|+.+.|...|+++++..|+
T Consensus 467 ~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~ 536 (679)
T 4e6h_A 467 VTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISD 536 (679)
T ss_dssp SCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSS
T ss_pred CChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCC
Confidence 456777777777777654 899999999999999999988888888888899999999999999998874
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=99.58 E-value=3.2e-14 Score=137.79 Aligned_cols=135 Identities=18% Similarity=0.282 Sum_probs=124.1
Q ss_pred hHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCC
Q 005108 433 EAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPS 512 (714)
Q Consensus 433 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~ 512 (714)
....++.+|..+...|++++|+..|++++ ++ +..++..+ |.++...|++++|+.+|+++++++|+
T Consensus 5 ~~~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~l------------g~~~~~~g~~~~A~~~~~~al~~~~~ 69 (213)
T 1hh8_A 5 EAISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNI------------GCMYTILKNMTEAEKAFTRSINRDKH 69 (213)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 35568899999999999999999999996 33 55666554 99999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH----------------HHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 005108 513 NSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYT----------------KALLRRAASNSKLEKWADAVRDFEVLRR 576 (714)
Q Consensus 513 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----------------~~~~~la~~~~~~g~~~eA~~~~~~al~ 576 (714)
+..+++++|.+|..+|++++|+..|++++++.|++. .+++.+|.+|..+|++++|+++|+++++
T Consensus 70 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 149 (213)
T 1hh8_A 70 LAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 149 (213)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999888766 9999999999999999999999999999
Q ss_pred hCCCCH
Q 005108 577 ELPDDN 582 (714)
Q Consensus 577 ~~p~~~ 582 (714)
++|++.
T Consensus 150 ~~p~~~ 155 (213)
T 1hh8_A 150 MKSEPR 155 (213)
T ss_dssp TCCSGG
T ss_pred cCcccc
Confidence 999764
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=99.58 E-value=7.1e-14 Score=129.08 Aligned_cols=134 Identities=18% Similarity=0.183 Sum_probs=123.2
Q ss_pred hhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCC
Q 005108 432 SEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDP 511 (714)
Q Consensus 432 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p 511 (714)
..+..++.+|.++...|++++|+..|+++++.+|.+..++..+ |.++...|++++|+.+|+++++.+|
T Consensus 11 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~------------a~~~~~~~~~~~A~~~~~~a~~~~~ 78 (166)
T 1a17_A 11 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNR------------SLAYLRTECYGYALGDATRAIELDK 78 (166)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 4477899999999999999999999999999999999888766 9999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHH--HHHHHHhccHHHHHHHHHHHHHh
Q 005108 512 SNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRR--AASNSKLEKWADAVRDFEVLRRE 577 (714)
Q Consensus 512 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l--a~~~~~~g~~~eA~~~~~~al~~ 577 (714)
.+..+++.+|.++..+|++++|+.+|+++++++|++..++..+ +..+...|++++|++.++++..+
T Consensus 79 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 79 KYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 9999999999999999999999999999999999999888555 44488899999999999877654
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=3.3e-15 Score=166.43 Aligned_cols=193 Identities=17% Similarity=0.110 Sum_probs=161.0
Q ss_pred HHHcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHhhccccCCCCCCCchhhhhhh
Q 005108 361 ARKVGD-WKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQ----------LEDAESSLSNIPKIEPSTVSSSQTRFFG 429 (714)
Q Consensus 361 ~~~~g~-~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~~~~~ 429 (714)
....++ .++|++.+++++..+|++ ..+|..++.++..+++ +++++++++++++.+|++
T Consensus 38 ~~~~~~~~eeal~~~~~~l~~nP~~-~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~---------- 106 (567)
T 1dce_A 38 KRQAGELDESVLELTSQILGANPDF-ATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKS---------- 106 (567)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTC----------
T ss_pred HHHcCCCCHHHHHHHHHHHHHCchh-HHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCC----------
Confidence 334444 467899999999999985 5666779999999988 899999999999999998
Q ss_pred hhhhHHHHHHHHHHHHHhC--cHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCc-CHHHHHHHHHHh
Q 005108 430 MLSEAYTFFVRAQIEMALG--RFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSE-RFTEACQAYGEG 506 (714)
Q Consensus 430 ~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g-~~~~A~~~~~~a 506 (714)
..+|+.++.++...+ ++++|+++++++++++|.+..+|... +.++...| .+++++++++++
T Consensus 107 ----y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R------------~~~l~~l~~~~~~el~~~~~~ 170 (567)
T 1dce_A 107 ----YGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYR------------RFVAAQAAVAPAEELAFTDSL 170 (567)
T ss_dssp ----HHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHH------------HHHHHHTCCCHHHHHHHHHTT
T ss_pred ----HHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHH------------HHHHHHcCCChHHHHHHHHHH
Confidence 888999999999988 66999999999999999998888755 77888888 888999999999
Q ss_pred hccCCCCHHHHHHHHHHHHHh--------------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHH------
Q 005108 507 LRFDPSNSVLYCNRAACWFKL--------------GQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWAD------ 566 (714)
Q Consensus 507 l~~~p~~~~~~~~la~~~~~~--------------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~e------ 566 (714)
++.+|.+..+|++++.++..+ +.+++|++++++++.++|++..+|+.++.++.+.+++++
T Consensus 171 I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~~~~~~~ 250 (567)
T 1dce_A 171 ITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDVLCCVHV 250 (567)
T ss_dssp TTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSCEEEEEE
T ss_pred HHHCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccceeeeee
Confidence 999999999999999888875 567888888888888888888888888888888887666
Q ss_pred ------HHHHHHHHHHhCCC
Q 005108 567 ------AVRDFEVLRRELPD 580 (714)
Q Consensus 567 ------A~~~~~~al~~~p~ 580 (714)
|+.+|.++++++|.
T Consensus 251 ~~~~~~~~~~f~~~i~~~~~ 270 (567)
T 1dce_A 251 SREEACLSVCFSRPLTVGSR 270 (567)
T ss_dssp ETTTTEEEEEEEEEECTTBT
T ss_pred ccCCceEEEEeccceecccc
Confidence 55556666666664
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.58 E-value=6.2e-14 Score=141.03 Aligned_cols=190 Identities=12% Similarity=-0.026 Sum_probs=151.0
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCC--CCCCchhhhhhhhhhhHHHHHHHHHHHHHh
Q 005108 370 ALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEP--STVSSSQTRFFGMLSEAYTFFVRAQIEMAL 447 (714)
Q Consensus 370 Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 447 (714)
|+..+++.+...+.. ...+..+|.++...|++++|++++.+.+..+| .+ ..++..++.++..+
T Consensus 85 a~~~l~~l~~~~~~~-~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~--------------lea~~l~vqi~L~~ 149 (310)
T 3mv2_B 85 NIEELENLLKDKQNS-PYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGT--------------TELLLLAIEVALLN 149 (310)
T ss_dssp CCHHHHHTTTTSCCC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTH--------------HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCCC-cHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCc--------------HHHHHHHHHHHHHC
Confidence 344455555443332 33345699999999999999999999988887 44 77888999999999
Q ss_pred CcHHHHHHHHHHHhccCCC----CHHHHHHHHhHHHHHHHHHHHhHHhhCc--CHHHHHHHHHHhhccCCC--CHHHHHH
Q 005108 448 GRFENAVTAAEKAGQIDPR----NVEVAVLLNNVKLVARARARGNDLFKSE--RFTEACQAYGEGLRFDPS--NSVLYCN 519 (714)
Q Consensus 448 g~~~~A~~~~~~al~~~p~----~~~~~~~l~~l~~~~~~~~~g~~~~~~g--~~~~A~~~~~~al~~~p~--~~~~~~~ 519 (714)
|+.+.|.+.++++.+.+|+ +......+ ..+++.+..| ++++|...|+++.+..|+ ....+++
T Consensus 150 ~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~L----------aea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln 219 (310)
T 3mv2_B 150 NNVSTASTIFDNYTNAIEDTVSGDNEMILNL----------AESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN 219 (310)
T ss_dssp TCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH----------HHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCccccccchHHHHHH----------HHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH
Confidence 9999999999999999883 12222222 1254455545 999999999999988886 3445555
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHh----------CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 005108 520 RAACWFKLGQWERSVEDSNQALLI----------QPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAESLF 589 (714)
Q Consensus 520 la~~~~~~g~~~~A~~~~~~al~~----------~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~L~ 589 (714)
++.++|++++|.+.++.+++. +|+++.++.+++.+...+|+ +|.++++++.+.+|+++.+.....
T Consensus 220 ---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d~~~ 294 (310)
T 3mv2_B 220 ---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKHHQE 294 (310)
T ss_dssp ---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHHHHH
T ss_pred ---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHHHHH
Confidence 899999999999999988876 58899999999999999998 999999999999999998876543
|
| >2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A | Back alignment and structure |
|---|
Probab=99.58 E-value=6.2e-15 Score=127.12 Aligned_cols=93 Identities=25% Similarity=0.341 Sum_probs=86.2
Q ss_pred hHHhhhccCCCceEEEeecCCCccccccchHHHHHHhhCC-CcEEEEEecccCcchhhhCCccccceEEEEeCCeEEEEE
Q 005108 619 EQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYP-SINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKEI 697 (714)
Q Consensus 619 e~~~~~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~-~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~~~ 697 (714)
+.|...+ ..++++++||++||++|+.+.|.++++..+++ ++.|+.||+++.+++++.|+|.++||+++|++|+.+.++
T Consensus 9 ~~~~~~~-~~~~~lv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~G~~~~~~ 87 (112)
T 2voc_A 9 QSFSAET-SEGVVLADFWAPWCGPSKMIAPVLEELDQEMGDKLKIVKIDVDENQETAGKYGVMSIPTLLVLKDGEVVETS 87 (112)
T ss_dssp TTHHHHH-SSSEEEEEEECTTBGGGGGHHHHHHHHHHHHTTTCEEEEEETTTCCSHHHHTTCCSBSEEEEEETTEEEEEE
T ss_pred HHHHHHh-CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCcEEEEEECCCCHHHHHHcCCCcccEEEEEeCCEEEEEE
Confidence 5566666 67799999999999999999999999999986 599999999999999999999999999999999999999
Q ss_pred cCC-CHHHHHHHHhhh
Q 005108 698 VCP-SRDMLEHSVRHY 712 (714)
Q Consensus 698 ~g~-~~~~l~~~~~~~ 712 (714)
.|. +.++|+++|+++
T Consensus 88 ~G~~~~~~l~~~l~~~ 103 (112)
T 2voc_A 88 VGFKPKEALQELVNKH 103 (112)
T ss_dssp ESCCCHHHHHHHHHTT
T ss_pred eCCCCHHHHHHHHHHH
Confidence 999 999999999875
|
| >2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A | Back alignment and structure |
|---|
Probab=99.58 E-value=4.8e-15 Score=129.12 Aligned_cols=102 Identities=25% Similarity=0.449 Sum_probs=92.8
Q ss_pred ceeeehhhhHHhhhccC----CCceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCcchhhhCCccccceEE
Q 005108 611 EVEEVSSLEQFRAAVSL----PGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAHAENVRIVPTFK 686 (714)
Q Consensus 611 ~~~~i~~~e~~~~~i~~----~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~ 686 (714)
.+..+.+.++|...+.. .+++++.||++||++|+.+.|.++++..+++++.|+.||+++.+++++.|+|.++||++
T Consensus 7 ~v~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~ 86 (118)
T 2vm1_A 7 AVIACHTKQEFDTHMANGKDTGKLVIIDFTASWCGPCRVIAPVFAEYAKKFPGAIFLKVDVDELKDVAEAYNVEAMPTFL 86 (118)
T ss_dssp CEEECCSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTSHHHHHHTTCCSBSEEE
T ss_pred ceEEecCHHHHHHHHHhcccCCCEEEEEEECCCCHhHHHHhHHHHHHHHHCCCcEEEEEEcccCHHHHHHcCCCcCcEEE
Confidence 45666677778777654 67999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCeEEEEEcCCCHHHHHHHHhhh
Q 005108 687 IYKNGSRMKEIVCPSRDMLEHSVRHY 712 (714)
Q Consensus 687 ~~~~G~~~~~~~g~~~~~l~~~~~~~ 712 (714)
+|++|+.+.++.|.+.++|.++|+++
T Consensus 87 ~~~~g~~~~~~~g~~~~~l~~~l~~~ 112 (118)
T 2vm1_A 87 FIKDGEKVDSVVGGRKDDIHTKIVAL 112 (118)
T ss_dssp EEETTEEEEEEESCCHHHHHHHHHHH
T ss_pred EEeCCeEEEEecCCCHHHHHHHHHHH
Confidence 99999999999999999999999875
|
| >2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.57 E-value=6.1e-15 Score=135.03 Aligned_cols=102 Identities=19% Similarity=0.290 Sum_probs=91.3
Q ss_pred cceeeehhhhHHhhhccCCCceEEEeecCCCccccccchHHHHHHhhCC-CcEEEEEecccCcchhhhCCccccceEEEE
Q 005108 610 GEVEEVSSLEQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYP-SINFLKVDIDESPGVAHAENVRIVPTFKIY 688 (714)
Q Consensus 610 ~~~~~i~~~e~~~~~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~-~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~ 688 (714)
+....+. .+.|...+....+++|+||++||++|+.+.|.++++..+++ ++.|++||+++.++++..|+|+++||+++|
T Consensus 47 ~~~~~l~-~~~f~~~~~~~~~vlv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~ 125 (155)
T 2ppt_A 47 GKVAGID-PAILARAERDDLPLLVDFWAPWCGPCRQMAPQFQAAAATLAGQVRLAKIDTQAHPAVAGRHRIQGIPAFILF 125 (155)
T ss_dssp SSEEECC-HHHHHHHTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTCEEEEEETTTSTHHHHHTTCCSSSEEEEE
T ss_pred CCCccCC-HHHHHHHHhCCCcEEEEEECCCCHHHHHHHHHHHHHHHHccCCEEEEEEeCCccHHHHHHcCCCcCCEEEEE
Confidence 3444444 46777777667899999999999999999999999999987 699999999999999999999999999999
Q ss_pred eCCeEEEEEcCC-CHHHHHHHHhhh
Q 005108 689 KNGSRMKEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 689 ~~G~~~~~~~g~-~~~~l~~~~~~~ 712 (714)
++|+.+.++.|. +.++|+++|+++
T Consensus 126 ~~G~~~~~~~G~~~~~~l~~~l~~~ 150 (155)
T 2ppt_A 126 HKGRELARAAGARPASELVGFVRGK 150 (155)
T ss_dssp ETTEEEEEEESCCCHHHHHHHHHHH
T ss_pred eCCeEEEEecCCCCHHHHHHHHHHH
Confidence 999999999999 999999999875
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.2e-13 Score=134.08 Aligned_cols=107 Identities=12% Similarity=0.038 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHH----hCcHHHHHHHHHHHhccCCC--CHHHHHHHHhHHHHHHHHHHHhHHhh----CcCHHHHHHHH
Q 005108 434 AYTFFVRAQIEMA----LGRFENAVTAAEKAGQIDPR--NVEVAVLLNNVKLVARARARGNDLFK----SERFTEACQAY 503 (714)
Q Consensus 434 ~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~l~~~~~~~~~g~~~~~----~g~~~~A~~~~ 503 (714)
..+++.+|.+|.. .+++++|+.+|+++++..+. ++.+++.+ |.+|.. .+++++|+.+|
T Consensus 85 ~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~L------------g~~y~~g~g~~~d~~~A~~~~ 152 (212)
T 3rjv_A 85 KSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLL------------GLIYASGVHGPEDDVKASEYF 152 (212)
T ss_dssp HHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHH------------HHHHHHTSSSSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHH------------HHHHHcCCCCCCCHHHHHHHH
Confidence 4456666666665 66777777777777777663 35555544 777777 77888888888
Q ss_pred HHhhccCCCCHHHHHHHHHHHHHh-C-----CHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 005108 504 GEGLRFDPSNSVLYCNRAACWFKL-G-----QWERSVEDSNQALLIQPNYTKALLRRA 555 (714)
Q Consensus 504 ~~al~~~p~~~~~~~~la~~~~~~-g-----~~~~A~~~~~~al~~~p~~~~~~~~la 555 (714)
+++++. +.++.+++++|.+|..- | ++++|+.+|+++++.. +..+...++
T Consensus 153 ~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g--~~~A~~~l~ 207 (212)
T 3rjv_A 153 KGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG--FDTGCEEFD 207 (212)
T ss_dssp HHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT--CHHHHHHHH
T ss_pred HHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHH
Confidence 888887 56777888888888764 2 7888888888888774 344444444
|
| >1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.57 E-value=2.9e-15 Score=129.45 Aligned_cols=103 Identities=30% Similarity=0.496 Sum_probs=93.0
Q ss_pred cceeeehhhhHHhhhccC----CCceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCcchhhhCCccccceE
Q 005108 610 GEVEEVSSLEQFRAAVSL----PGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAHAENVRIVPTF 685 (714)
Q Consensus 610 ~~~~~i~~~e~~~~~i~~----~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~ 685 (714)
+.+..+.+.++|...+.. .+++++.||++||++|+.+.|.++++..+++++.|+.||+++.+++++.|+|.++||+
T Consensus 4 ~~v~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~v~~~~~~~~~~~~~v~~~Pt~ 83 (113)
T 1ti3_A 4 GQVIACHTVDTWKEHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFPNVTFLKVDVDELKAVAEEWNVEAMPTF 83 (113)
T ss_dssp CCEEEECSHHHHHHHHHHHTTSSSEEEEEEECSSCHHHHHHHHHHHHHHHHCSSEEEEEEETTTCHHHHHHHHCSSTTEE
T ss_pred CceeEeccHHHHHHHHHHhhhcCCeEEEEEECCCCHHHHHHHHHHHHHHHhCCCcEEEEEEccccHHHHHhCCCCcccEE
Confidence 345667677777776653 6789999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCeEEEEEcCCCHHHHHHHHhhh
Q 005108 686 KIYKNGSRMKEIVCPSRDMLEHSVRHY 712 (714)
Q Consensus 686 ~~~~~G~~~~~~~g~~~~~l~~~~~~~ 712 (714)
++|++|+.+.++.|.+.+.|.++|+++
T Consensus 84 ~~~~~G~~~~~~~g~~~~~l~~~l~~~ 110 (113)
T 1ti3_A 84 IFLKDGKLVDKTVGADKDGLPTLVAKH 110 (113)
T ss_dssp EEEETTEEEEEEECCCTTHHHHHHHHH
T ss_pred EEEeCCEEEEEEecCCHHHHHHHHHHh
Confidence 999999999999999889999999875
|
| >2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=99.57 E-value=4.5e-15 Score=129.96 Aligned_cols=103 Identities=29% Similarity=0.513 Sum_probs=95.8
Q ss_pred cceeeehhhhHHhhhccCCCceEEEeecCCCccccccchHHHHHHhhCCC--cEEEEEecccCcchhhhCCccccceEEE
Q 005108 610 GEVEEVSSLEQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYPS--INFLKVDIDESPGVAHAENVRIVPTFKI 687 (714)
Q Consensus 610 ~~~~~i~~~e~~~~~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~--~~~~~vd~d~~~~l~~~~~v~~~Pt~~~ 687 (714)
.....+.+.++|..++...+++++.||++||+.|+.+.|.++++...+++ +.|+.||+++.+++++.|+|.++||+++
T Consensus 15 ~~~~~i~~~~~f~~~l~~~k~vvv~f~a~~C~~C~~~~~~l~~l~~~~~~~~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~ 94 (121)
T 2j23_A 15 GSVQVISSYDQFKQVTGGDKVVVIDFWATWCGPCKMIGPVFEKISDTPAGDKVGFYKVDVDEQSQIAQEVGIRAMPTFVF 94 (121)
T ss_dssp CCEEECCSHHHHHHHHSSSSCEEEEEECTTCSTHHHHHHHHHHHHTSTHHHHSEEEEEETTTCHHHHHHHTCCSSSEEEE
T ss_pred cceEEcCCHHHHHHHHcCCCEEEEEEECCCCHhHHHHHHHHHHHHHHCcCCcEEEEEEECcCCHHHHHHcCCCcccEEEE
Confidence 45677888899999888788999999999999999999999999999875 9999999999999999999999999999
Q ss_pred EeCCeEEEEEcCCCHHHHHHHHhhh
Q 005108 688 YKNGSRMKEIVCPSRDMLEHSVRHY 712 (714)
Q Consensus 688 ~~~G~~~~~~~g~~~~~l~~~~~~~ 712 (714)
|++|+.+.++.|.+.++|+++|+++
T Consensus 95 ~~~G~~~~~~~G~~~~~l~~~l~~~ 119 (121)
T 2j23_A 95 FKNGQKIDTVVGADPSKLQAAITQH 119 (121)
T ss_dssp EETTEEEEEEESSCHHHHHHHHHHH
T ss_pred EECCeEEeeEcCCCHHHHHHHHHHh
Confidence 9999999999999999999999875
|
| >2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A | Back alignment and structure |
|---|
Probab=99.57 E-value=5.5e-15 Score=127.23 Aligned_cols=100 Identities=29% Similarity=0.384 Sum_probs=88.6
Q ss_pred eeeehhhhHHhhhcc--CCCceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecc-cCcchhhhCCccccceEEEE
Q 005108 612 VEEVSSLEQFRAAVS--LPGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDID-ESPGVAHAENVRIVPTFKIY 688 (714)
Q Consensus 612 ~~~i~~~e~~~~~i~--~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d-~~~~l~~~~~v~~~Pt~~~~ 688 (714)
+..+.. ++|...+. ..++++++||++||++|+.+.|.++++..+++++.|+.||++ +.+++++.|+|.++||++++
T Consensus 7 v~~l~~-~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~~v~~~Pt~~~~ 85 (111)
T 2pu9_C 7 VTEVNK-DTFWPIVKAAGDKPVVLDMFTQWCGPSKAMAPKYEKLAEEYLDVIFLKLDCNQENKTLAKELGIRVVPTFKIL 85 (111)
T ss_dssp EEEECT-TTHHHHHTTCTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEECSSTTHHHHHHHCCSBSSEEEEE
T ss_pred cEEech-HHHHHHHHhcCCCEEEEEEECCcCHhHHHHCHHHHHHHHHCCCeEEEEEecCcchHHHHHHcCCCeeeEEEEE
Confidence 334443 56666665 367899999999999999999999999999999999999998 78999999999999999999
Q ss_pred eCCeEEEEEcCCCHHHHHHHHhhh
Q 005108 689 KNGSRMKEIVCPSRDMLEHSVRHY 712 (714)
Q Consensus 689 ~~G~~~~~~~g~~~~~l~~~~~~~ 712 (714)
++|+.+.++.|.+.++|.++|+++
T Consensus 86 ~~G~~~~~~~G~~~~~l~~~l~~~ 109 (111)
T 2pu9_C 86 KENSVVGEVTGAKYDKLLEAIQAA 109 (111)
T ss_dssp SSSSEEEEEESSCHHHHHHHHHHH
T ss_pred eCCcEEEEEcCCCHHHHHHHHHHh
Confidence 999999999999889999999875
|
| >3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A | Back alignment and structure |
|---|
Probab=99.57 E-value=5.7e-15 Score=132.90 Aligned_cols=102 Identities=23% Similarity=0.427 Sum_probs=92.3
Q ss_pred ceeeehhhhHHhhhcc----CCCceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCcchhhhCCccccceEE
Q 005108 611 EVEEVSSLEQFRAAVS----LPGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAHAENVRIVPTFK 686 (714)
Q Consensus 611 ~~~~i~~~e~~~~~i~----~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~ 686 (714)
.+..+.+.++|...+. .+++++++||++||++|+.+.|.++++..+++++.|+.||+++.+++++.|+|.++||++
T Consensus 25 ~~~~i~~~~~~~~~~~~~~~~~k~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~v~~~~v~~~~~~~~~~~~~v~~~Pt~~ 104 (139)
T 3d22_A 25 NVHLITTKERWDQKLSEASRDGKIVLANFSARWCGPSRQIAPYYIELSENYPSLMFLVIDVDELSDFSASWEIKATPTFF 104 (139)
T ss_dssp TCEEECSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTSHHHHHHTTCCEESEEE
T ss_pred cEEEeCCHHHHHHHHHHHhhcCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEEeCcccHHHHHHcCCCcccEEE
Confidence 4566666777877663 467899999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCeEEEEEcCCCHHHHHHHHhhh
Q 005108 687 IYKNGSRMKEIVCPSRDMLEHSVRHY 712 (714)
Q Consensus 687 ~~~~G~~~~~~~g~~~~~l~~~~~~~ 712 (714)
+|++|+++.++.|.+.++|+++|+++
T Consensus 105 ~~~~G~~~~~~~G~~~~~l~~~l~~~ 130 (139)
T 3d22_A 105 FLRDGQQVDKLVGANKPELHKKITAI 130 (139)
T ss_dssp EEETTEEEEEEESCCHHHHHHHHHHH
T ss_pred EEcCCeEEEEEeCCCHHHHHHHHHHH
Confidence 99999999999999889999999875
|
| >2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A | Back alignment and structure |
|---|
Probab=99.57 E-value=2.3e-15 Score=134.95 Aligned_cols=94 Identities=15% Similarity=0.211 Sum_probs=72.5
Q ss_pred hHHhhhccCCCceEEEeecCC--CccccccchHHHHHHhhCCCcE--EEEEecccCcchhhhCCccccceEEEEeCCeEE
Q 005108 619 EQFRAAVSLPGVSVVHFKSAS--NLHCKQISPYVETLCGRYPSIN--FLKVDIDESPGVAHAENVRIVPTFKIYKNGSRM 694 (714)
Q Consensus 619 e~~~~~i~~~~~~vv~f~a~~--c~~C~~~~p~l~~l~~~~~~~~--~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~ 694 (714)
++|...+...+.+++.|++.| |++|+.+.|.++++..+|+++. |++||+|+.++++.+|+|+++||+++|++|+++
T Consensus 25 ~~f~~~i~~~~~~vv~f~~~~~~C~~C~~l~P~l~~la~~~~~v~~~~~~Vd~d~~~~la~~~~V~~iPT~~~fk~G~~v 104 (142)
T 2es7_A 25 STVDDWIKRVGDGVILLSSDPRRTPEVSDNPVMIAELLREFPQFDWQVAVADLEQSEAIGDRFNVRRFPATLVFTDGKLR 104 (142)
T ss_dssp C--------CCSEEEEECCCSCC----CCHHHHHHHHHHTCTTSCCEEEEECHHHHHHHHHTTTCCSSSEEEEESCC---
T ss_pred ccHHHHHHhCCCEEEEEECCCCCCccHHHHHHHHHHHHHHhcccceeEEEEECCCCHHHHHhcCCCcCCeEEEEeCCEEE
Confidence 667777777777889999877 9999999999999999996688 999999999999999999999999999999999
Q ss_pred EEEcCC-CHHHHHHHHhhh
Q 005108 695 KEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 695 ~~~~g~-~~~~l~~~~~~~ 712 (714)
.++.|. +.++|+++|+++
T Consensus 105 ~~~~G~~~~~~l~~~i~~~ 123 (142)
T 2es7_A 105 GALSGIHPWAELLTLMRSI 123 (142)
T ss_dssp -CEESCCCHHHHHHHHHHH
T ss_pred EEEeCCCCHHHHHHHHHHH
Confidence 999999 999999999875
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.57 E-value=8.4e-14 Score=123.07 Aligned_cols=134 Identities=22% Similarity=0.384 Sum_probs=125.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCC
Q 005108 388 LSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRN 467 (714)
Q Consensus 388 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 467 (714)
.+..+|.++...|++++|+..++++++.+|.+ ...+..++.++...|++++|+.++++++...|.+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--------------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~ 68 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRS--------------AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 68 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC--------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcc--------------hhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCc
Confidence 35668999999999999999999999999887 7789999999999999999999999999999999
Q ss_pred HHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC
Q 005108 468 VEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNY 547 (714)
Q Consensus 468 ~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 547 (714)
...+..+ |.++...|++++|+.+|+++++..|.+..++..+|.++...|++++|+..|+++++.+|+.
T Consensus 69 ~~~~~~l------------~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 136 (136)
T 2fo7_A 69 AEAWYNL------------GNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136 (136)
T ss_dssp HHHHHHH------------HHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred hHHHHHH------------HHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence 8887765 9999999999999999999999999999999999999999999999999999999998863
|
| >3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A | Back alignment and structure |
|---|
Probab=99.56 E-value=8.2e-15 Score=124.91 Aligned_cols=95 Identities=28% Similarity=0.505 Sum_probs=88.0
Q ss_pred hhhHHhhhccCCCceEEEeecCCCccccccchHHHHHHhhCCC-cEEEEEecccCcchhhhCCccccceEEEEeCCeEEE
Q 005108 617 SLEQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYPS-INFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMK 695 (714)
Q Consensus 617 ~~e~~~~~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~-~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~ 695 (714)
+.+.|...+ ..+++++.||++||++|+.+.|.++++..++++ +.|+.||+++.+++++.|+|.++||+++|++|+.+.
T Consensus 9 ~~~~~~~~~-~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~G~~~~ 87 (106)
T 3die_A 9 TDADFDSKV-ESGVQLVDFWATACGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVD 87 (106)
T ss_dssp CTTTHHHHS-CSSEEEEEEECSBCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCSBSEEEEEETTEEEE
T ss_pred CHHHHHHHh-cCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCcEEEEEECCcCHHHHHhCCCcccCEEEEEeCCeEEE
Confidence 445677777 778999999999999999999999999999986 999999999999999999999999999999999999
Q ss_pred EEcCC-CHHHHHHHHhhh
Q 005108 696 EIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 696 ~~~g~-~~~~l~~~~~~~ 712 (714)
++.|. +.++|+++|+++
T Consensus 88 ~~~g~~~~~~l~~~l~~~ 105 (106)
T 3die_A 88 KVVGFQPKENLAEVLDKH 105 (106)
T ss_dssp EEESCCCHHHHHHHHHTT
T ss_pred EEeCCCCHHHHHHHHHHh
Confidence 99999 999999999875
|
| >1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A | Back alignment and structure |
|---|
Probab=99.56 E-value=8.6e-15 Score=124.79 Aligned_cols=99 Identities=26% Similarity=0.418 Sum_probs=89.6
Q ss_pred eehhhhHHhhhcc--CCCceEEEeecCCCccccccchHHHHHHhhC-CCcEEEEEecccCcchhhhCCccccceEEEEeC
Q 005108 614 EVSSLEQFRAAVS--LPGVSVVHFKSASNLHCKQISPYVETLCGRY-PSINFLKVDIDESPGVAHAENVRIVPTFKIYKN 690 (714)
Q Consensus 614 ~i~~~e~~~~~i~--~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~-~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~ 690 (714)
.+.+.+.|...+. ..+++++.||++||++|+.+.|.++++..++ +++.|+.||+++.+++++.|+|.++||+++|++
T Consensus 4 ~l~~~~~~~~~l~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~ 83 (106)
T 1xwb_A 4 QVKDKADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDECEDIAMEYNISSMPTFVFLKN 83 (106)
T ss_dssp ECCSHHHHHHHHHHHTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCHHHHHHTTCCSSSEEEEEET
T ss_pred ecCCHHHHHHHHHhcCCCEEEEEEECCcCHHHHHhhHHHHHHHHHhCCCeEEEEEeccchHHHHHHcCCCcccEEEEEcC
Confidence 4555567777665 5779999999999999999999999999999 679999999999999999999999999999999
Q ss_pred CeEEEEEcCCCHHHHHHHHhhh
Q 005108 691 GSRMKEIVCPSRDMLEHSVRHY 712 (714)
Q Consensus 691 G~~~~~~~g~~~~~l~~~~~~~ 712 (714)
|+.+.++.|.+.+.|+++|+++
T Consensus 84 G~~~~~~~g~~~~~l~~~i~~~ 105 (106)
T 1xwb_A 84 GVKVEEFAGANAKRLEDVIKAN 105 (106)
T ss_dssp TEEEEEEESCCHHHHHHHHHHT
T ss_pred CcEEEEEcCCCHHHHHHHHHHh
Confidence 9999999999889999999875
|
| >3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.56 E-value=3.7e-15 Score=133.22 Aligned_cols=100 Identities=16% Similarity=0.211 Sum_probs=89.7
Q ss_pred ccceeeehhhhHHhhhccCCCceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEec---------ccCcchhhhCCc
Q 005108 609 GGEVEEVSSLEQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDI---------DESPGVAHAENV 679 (714)
Q Consensus 609 ~~~~~~i~~~e~~~~~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~---------d~~~~l~~~~~v 679 (714)
.+.+..+ +.++|...+.. +++|+||++||++|+.+.|.++++..+++ +.|+.||+ ++.+++++.|+|
T Consensus 15 ~~~v~~l-~~~~~~~~~~~--~vlv~F~a~wC~~C~~~~p~l~~l~~~~~-v~~~~vd~~~~~~~~~~d~~~~l~~~~~v 90 (135)
T 3emx_A 15 DGRLIYI-TPEEFRQLLQG--DAILAVYSKTCPHCHRDWPQLIQASKEVD-VPIVMFIWGSLIGERELSAARLEMNKAGV 90 (135)
T ss_dssp TTEEEEC-CHHHHHHHHTS--SEEEEEEETTCHHHHHHHHHHHHHHTTCC-SCEEEEEECTTCCHHHHHHHHHHHHHHTC
T ss_pred cCceeec-CHHHHHHHhCC--cEEEEEECCcCHhhhHhChhHHHHHHHCC-CEEEEEECCCchhhhhhhhhHHHHHHcCC
Confidence 3455555 44777777765 99999999999999999999999999998 99999999 889999999999
Q ss_pred cccceEEEEeCCeEEEEEcCC-CHHHHHHHHhhh
Q 005108 680 RIVPTFKIYKNGSRMKEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 680 ~~~Pt~~~~~~G~~~~~~~g~-~~~~l~~~~~~~ 712 (714)
.++||+++|++|+++.++.|. +.+.++.+++++
T Consensus 91 ~~~Pt~~~~~~G~~v~~~~G~~~~~~~~~~i~~~ 124 (135)
T 3emx_A 91 EGTPTLVFYKEGRIVDKLVGATPWSLKVEKAREI 124 (135)
T ss_dssp CSSSEEEEEETTEEEEEEESCCCHHHHHHHHHHH
T ss_pred ceeCeEEEEcCCEEEEEEeCCCCHHHHHHHHHHH
Confidence 999999999999999999999 999999998875
|
| >3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=99.56 E-value=6.1e-15 Score=126.37 Aligned_cols=96 Identities=23% Similarity=0.380 Sum_probs=89.4
Q ss_pred hhhHHhhhccCCCceEEEeecCCCccccccchHHHHHHhhCC-CcEEEEEecccCcchhhhCCccccceEEEEeCCeEEE
Q 005108 617 SLEQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYP-SINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMK 695 (714)
Q Consensus 617 ~~e~~~~~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~-~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~ 695 (714)
+.+.|...+...+++++.||++||++|+.+.|.++++...++ .+.|+.||+++.+++++.|+|.++||+++|++|+.+.
T Consensus 10 ~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~ 89 (109)
T 3tco_A 10 TEENFDEVIRNNKLVLVDCWAEWCAPCHLYEPIYKKVAEKYKGKAVFGRLNVDENQKIADKYSVLNIPTTLIFVNGQLVD 89 (109)
T ss_dssp CTTTHHHHHHHSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTCHHHHHHTTCCSSSEEEEEETTEEEE
T ss_pred cHHHHHHHHhcCCeEEEEEECCCCHHHHhhhHHHHHHHHHhCCCceEEEEccccCHHHHHhcCcccCCEEEEEcCCcEEE
Confidence 446777777778899999999999999999999999999998 5999999999999999999999999999999999999
Q ss_pred EEcCC-CHHHHHHHHhhh
Q 005108 696 EIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 696 ~~~g~-~~~~l~~~~~~~ 712 (714)
++.|. +.++|.++|+++
T Consensus 90 ~~~g~~~~~~l~~~l~~~ 107 (109)
T 3tco_A 90 SLVGAVDEDTLESTVNKY 107 (109)
T ss_dssp EEESCCCHHHHHHHHHHH
T ss_pred eeeccCCHHHHHHHHHHH
Confidence 99999 999999999875
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=99.56 E-value=9.3e-14 Score=134.46 Aligned_cols=130 Identities=15% Similarity=0.114 Sum_probs=120.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCH
Q 005108 389 SMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNV 468 (714)
Q Consensus 389 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 468 (714)
++.+|.++...|++++|+..|++++ ++ + ..+++.+|.++...|++++|+.+|++++.++|++.
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~--------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 71 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ--DP-H--------------SRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLA 71 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS--SC-C--------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc--CC-C--------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccch
Confidence 4568999999999999999999996 33 3 67899999999999999999999999999999999
Q ss_pred HHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCH----------------HHHHHHHHHHHHhCCHHH
Q 005108 469 EVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNS----------------VLYCNRAACWFKLGQWER 532 (714)
Q Consensus 469 ~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~----------------~~~~~la~~~~~~g~~~~ 532 (714)
.++..+ |.++...|++++|+.+|+++++..|.+. .+++++|.+|..+|++++
T Consensus 72 ~~~~~l------------g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 139 (213)
T 1hh8_A 72 VAYFQR------------GMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKK 139 (213)
T ss_dssp HHHHHH------------HHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHH------------HHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHH
Confidence 888766 9999999999999999999999888766 999999999999999999
Q ss_pred HHHHHHHHHHhCCCC
Q 005108 533 SVEDSNQALLIQPNY 547 (714)
Q Consensus 533 A~~~~~~al~~~p~~ 547 (714)
|+..|+++++++|++
T Consensus 140 A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 140 AEEQLALATSMKSEP 154 (213)
T ss_dssp HHHHHHHHHTTCCSG
T ss_pred HHHHHHHHHHcCccc
Confidence 999999999999986
|
| >2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.2e-14 Score=128.48 Aligned_cols=95 Identities=24% Similarity=0.406 Sum_probs=86.5
Q ss_pred hhHHhh-hccCCCceEEEeecCCCccccccchHHHHHHhhCC-CcEEEEEecccCcchhhhCCccccceEEEEeCCeEEE
Q 005108 618 LEQFRA-AVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYP-SINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMK 695 (714)
Q Consensus 618 ~e~~~~-~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~-~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~ 695 (714)
.++|.. ++...+++++.||++||++|+.+.|.++++..+++ ++.|+.||+++.+++++.|+|.++||+++|++|+.+.
T Consensus 29 ~~~f~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~G~~~~ 108 (128)
T 2o8v_B 29 DDSFDTDVLKADGAILVDFWAEWCGPAKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAA 108 (128)
T ss_dssp TTTHHHHTTTCSSEEEEEEECSSCHHHHHTHHHHHHHHHHTTTTEEEEEEETTTCCTTSGGGTCCSSSEEEEEETTEEEE
T ss_pred hhhHHHHHHhcCCEEEEEEECCCCHHHHHHhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCCccCEEEEEeCCEEEE
Confidence 355654 44567899999999999999999999999999997 5999999999999999999999999999999999999
Q ss_pred EEcCC-CHHHHHHHHhhh
Q 005108 696 EIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 696 ~~~g~-~~~~l~~~~~~~ 712 (714)
++.|. +.++|+++|+++
T Consensus 109 ~~~G~~~~~~l~~~l~~~ 126 (128)
T 2o8v_B 109 TKVGALSKGQLKEFLDAN 126 (128)
T ss_dssp EEESCCCHHHHHHHHHHH
T ss_pred EEcCCCCHHHHHHHHHHh
Confidence 99999 999999999875
|
| >1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.1e-14 Score=125.48 Aligned_cols=100 Identities=26% Similarity=0.445 Sum_probs=87.1
Q ss_pred eeehhhhHHhhhccCCCceEEEeecCCCccccccchHHHHHHhhCC-CcEEEEEecccCcchhhhCCccccceEEEEeCC
Q 005108 613 EEVSSLEQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYP-SINFLKVDIDESPGVAHAENVRIVPTFKIYKNG 691 (714)
Q Consensus 613 ~~i~~~e~~~~~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~-~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G 691 (714)
..+...+....++...+++++.||++||++|+.+.|.++++..+++ ++.|+.||+++.+++++.|+|.++||+++|++|
T Consensus 8 ~~l~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~G 87 (112)
T 1t00_A 8 KHVTDDSFEQDVLKNDKPVLVDFWAAWCGPCRQIAPSLEAIAAEYGDKIEIVKLNIDENPGTAAKYGVMSIPTLNVYQGG 87 (112)
T ss_dssp EEECTTTHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCSSSEEEEEETT
T ss_pred EecchhhHHHHHhhCCCeEEEEEECCCCHhHHhcCHHHHHHHHHhcCCeEEEEEEcCCCHHHHHhCCCCcccEEEEEeCC
Confidence 3444433333455567799999999999999999999999999995 599999999999999999999999999999999
Q ss_pred eEEEEEcCC-CHHHHHHHHhhh
Q 005108 692 SRMKEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 692 ~~~~~~~g~-~~~~l~~~~~~~ 712 (714)
+.+.++.|. +.+.|+++|+++
T Consensus 88 ~~~~~~~G~~~~~~l~~~l~~~ 109 (112)
T 1t00_A 88 EVAKTIVGAKPKAAIVRDLEDF 109 (112)
T ss_dssp EEEEEEESCCCHHHHHHHTHHH
T ss_pred EEEEEEeCCCCHHHHHHHHHHH
Confidence 999999999 899999998875
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=99.56 E-value=1.2e-14 Score=147.72 Aligned_cols=193 Identities=13% Similarity=0.030 Sum_probs=143.2
Q ss_pred HHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhh
Q 005108 352 EKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGML 431 (714)
Q Consensus 352 ~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 431 (714)
..+..++..+...|++++|+..|+++++.+|+ ...++.++|.+|..+|++++|+..|+++++++|++
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------------ 71 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDGQS------------ 71 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTC------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC------------
Confidence 34566777788889999999999999998887 46677778999999999999999999999998888
Q ss_pred hhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCC
Q 005108 432 SEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDP 511 (714)
Q Consensus 432 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p 511 (714)
..+++.+|.++..+|++++|+..|+++++++|++...+... ..... +..++..+........+
T Consensus 72 --~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~------------~~~~~---~~~~~~~~~~~~~~~~~ 134 (281)
T 2c2l_A 72 --VKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDD------------IPSAL---RIAKKKRWNSIEERRIH 134 (281)
T ss_dssp --HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSH------------HHHHH---HHHHHHHHHHHHHTCCC
T ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHH------------HHHHH---HHHHHHHHHHHHHHHHh
Confidence 77888889999999999999999999888887653211100 00011 12222333333344566
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh-ccHHHHHHHHHHHHH
Q 005108 512 SNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKL-EKWADAVRDFEVLRR 576 (714)
Q Consensus 512 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~eA~~~~~~al~ 576 (714)
.+..+...++..+ .|++++|++.|+++++++|++......++.++.+. +++++|.+.|+++.+
T Consensus 135 ~~~~i~~~l~~l~--~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 135 QESELHSYLTRLI--AAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp CCCHHHHHHHHHH--HHHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred hhHHHHHHHHHHH--HHHHHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 7777777776654 68889999999999888888887777777777666 678888888887755
|
| >2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ... | Back alignment and structure |
|---|
Probab=99.55 E-value=1.6e-14 Score=123.58 Aligned_cols=94 Identities=26% Similarity=0.464 Sum_probs=85.5
Q ss_pred hHHhh-hccCCCceEEEeecCCCccccccchHHHHHHhhCC-CcEEEEEecccCcchhhhCCccccceEEEEeCCeEEEE
Q 005108 619 EQFRA-AVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYP-SINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKE 696 (714)
Q Consensus 619 e~~~~-~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~-~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~~ 696 (714)
++|.. ++...+++++.||++||++|+.+.|.++++..+++ ++.|+.||+++.+++++.|+|.++||+++|++|+.+.+
T Consensus 10 ~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~G~~~~~ 89 (108)
T 2trx_A 10 DSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAAT 89 (108)
T ss_dssp TTHHHHTTTCSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCTTHHHHTTCCSSSEEEEEETTEEEEE
T ss_pred hhHHHHHHhcCCeEEEEEECCCCHhHHHHHHHHHHHHHHhCCCcEEEEEECCCCHHHHHHcCCcccCEEEEEeCCEEEEE
Confidence 45553 44567799999999999999999999999999997 59999999999999999999999999999999999999
Q ss_pred EcCC-CHHHHHHHHhhh
Q 005108 697 IVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 697 ~~g~-~~~~l~~~~~~~ 712 (714)
+.|. +.++|+++|+++
T Consensus 90 ~~G~~~~~~l~~~l~~~ 106 (108)
T 2trx_A 90 KVGALSKGQLKEFLDAN 106 (108)
T ss_dssp EESCCCHHHHHHHHHHH
T ss_pred EecCCCHHHHHHHHHHh
Confidence 9999 999999999875
|
| >3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.55 E-value=9.7e-15 Score=131.44 Aligned_cols=100 Identities=27% Similarity=0.380 Sum_probs=89.6
Q ss_pred eeeehhhhHHh-hhccCCCceEEEeecCCCccccccchHHHHHHhhCCC-cEEEEEecccCcchhhhCCccccceEEEEe
Q 005108 612 VEEVSSLEQFR-AAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYPS-INFLKVDIDESPGVAHAENVRIVPTFKIYK 689 (714)
Q Consensus 612 ~~~i~~~e~~~-~~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~-~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~ 689 (714)
+..+.. +.|. .++...++++|.||++||++|+.+.|.++++..++++ +.|+.||+++.+++++.|+|.++||+++|+
T Consensus 8 v~~l~~-~~f~~~~~~~~~~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~ 86 (140)
T 3hz4_A 8 IIEFED-MTWSQQVEDSKKPVVVMFYSPACPYCKAMEPYFEEYAKEYGSSAVFGRINIATNPWTAEKYGVQGTPTFKFFC 86 (140)
T ss_dssp EEEECH-HHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTSEEEEEETTTCHHHHHHHTCCEESEEEEEE
T ss_pred eEEcch-HhHHHHHHhCCCcEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCcCHhHHHHCCCCcCCEEEEEe
Confidence 334444 4555 6666788999999999999999999999999999987 999999999999999999999999999999
Q ss_pred CCeEEEEEcCC-CHHHHHHHHhhh
Q 005108 690 NGSRMKEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 690 ~G~~~~~~~g~-~~~~l~~~~~~~ 712 (714)
+|+.+.++.|. +.+.|.++|+++
T Consensus 87 ~G~~~~~~~G~~~~~~l~~~l~~~ 110 (140)
T 3hz4_A 87 HGRPVWEQVGQIYPSILKNAVRDM 110 (140)
T ss_dssp TTEEEEEEESSCCHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCHHHHHHHHHHH
Confidence 99999999999 999999999875
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.55 E-value=1.2e-14 Score=139.27 Aligned_cols=151 Identities=19% Similarity=0.222 Sum_probs=118.4
Q ss_pred HHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCH-----
Q 005108 440 RAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNS----- 514 (714)
Q Consensus 440 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~----- 514 (714)
.+......+++++|.+.++......+.... .+..+|..++..|+|++|+.+|++++++.|.++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 77 (198)
T 2fbn_A 10 HSSGRENLYFQGAKKSIYDYTDEEKVQSAF------------DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQ 77 (198)
T ss_dssp ------------CCCSGGGCCHHHHHHHHH------------HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCH
T ss_pred hhhhhhhhhhccccCchhhCCHHHHHHHHH------------HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchh
Confidence 344555666777666666544333222222 333559999999999999999999999988887
Q ss_pred -----------HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHH
Q 005108 515 -----------VLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNE 583 (714)
Q Consensus 515 -----------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~ 583 (714)
.+++++|.+|..+|++++|+.+|+++++++|++..+++.+|.+|..+|++++|+.+|+++++++|++..
T Consensus 78 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~ 157 (198)
T 2fbn_A 78 ILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLD 157 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHH
Confidence 899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhcccc
Q 005108 584 IAESLFHAQVSLKKSRGEE 602 (714)
Q Consensus 584 ~~~~L~~~~~~l~~~~~~~ 602 (714)
++..+..+...+++..+.+
T Consensus 158 ~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 158 IRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp HHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999998887766544
|
| >2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=1e-14 Score=127.91 Aligned_cols=100 Identities=28% Similarity=0.437 Sum_probs=89.5
Q ss_pred eeehhhhHHhhhcc----CCCceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCcchhhhCCccccceEEEE
Q 005108 613 EEVSSLEQFRAAVS----LPGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAHAENVRIVPTFKIY 688 (714)
Q Consensus 613 ~~i~~~e~~~~~i~----~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~ 688 (714)
..+.+.+.|...+. ..++++++||++||++|+.+.|.++++..+++++.|+.||+++.+++++.|+|.++||+++|
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~ 94 (122)
T 2vlu_A 15 ISVHSLEQWTMQIEEANTAKKLVVIDFTASWCGPCRIMAPVFADLAKKFPNAVFLKVDVDELKPIAEQFSVEAMPTFLFM 94 (122)
T ss_dssp EEECSHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTCHHHHHHTTCCSSSEEEEE
T ss_pred eeccCHHHHHHHHHHhhccCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCcEEEEEECCCCHHHHHHcCCCcccEEEEE
Confidence 34455567776664 46799999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCeEEEEEcCCCHHHHHHHHhhh
Q 005108 689 KNGSRMKEIVCPSRDMLEHSVRHY 712 (714)
Q Consensus 689 ~~G~~~~~~~g~~~~~l~~~~~~~ 712 (714)
++|+.+.++.|...++|+++|+++
T Consensus 95 ~~G~~~~~~~G~~~~~l~~~l~~~ 118 (122)
T 2vlu_A 95 KEGDVKDRVVGAIKEELTAKVGLH 118 (122)
T ss_dssp ETTEEEEEEESSCHHHHHHHHHHH
T ss_pred eCCEEEEEEeCcCHHHHHHHHHHH
Confidence 999999999998888899999875
|
| >1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A | Back alignment and structure |
|---|
Probab=99.55 E-value=9.1e-15 Score=124.42 Aligned_cols=94 Identities=21% Similarity=0.421 Sum_probs=86.3
Q ss_pred hHHhhhccCCCceEEEeecCCCccccccchHHHHHHhhCCC-cEEEEEecccCcchhhhCCccccceEEEEeCCeEEEEE
Q 005108 619 EQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYPS-INFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKEI 697 (714)
Q Consensus 619 e~~~~~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~-~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~~~ 697 (714)
+.|..++...+++++.||++||++|+.+.|.++++..++++ +.|+.||+++.+++++.|+|.++||+++|++|+.+.++
T Consensus 8 ~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~G~~~~~~ 87 (105)
T 1nsw_A 8 ANFQQAIQGDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETTSQFGIMSIPTLILFKGGRPVKQL 87 (105)
T ss_dssp TTHHHHHSSSSCEEEEEECTTCHHHHHHHHHHHHHHHHSTTTCEEEEEETTTCHHHHHHTTCCSSSEEEEEETTEEEEEE
T ss_pred HhHHHHHhCCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECcCCHHHHHHcCCccccEEEEEeCCeEEEEE
Confidence 45666666778999999999999999999999999999975 99999999999999999999999999999999999999
Q ss_pred cCC-CHHHHHHHHhhh
Q 005108 698 VCP-SRDMLEHSVRHY 712 (714)
Q Consensus 698 ~g~-~~~~l~~~~~~~ 712 (714)
.|. +.+.|+++|+++
T Consensus 88 ~G~~~~~~l~~~l~~~ 103 (105)
T 1nsw_A 88 IGYQPKEQLEAQLADV 103 (105)
T ss_dssp ESCCCHHHHHHHTTTT
T ss_pred ecCCCHHHHHHHHHHH
Confidence 999 899999998875
|
| >1qgv_A Spliceosomal protein U5-15KD; snRNP, thioredoxin, transcription; 1.40A {Homo sapiens} SCOP: c.47.1.8 PDB: 1syx_A 1pqn_A | Back alignment and structure |
|---|
Probab=99.55 E-value=7.4e-15 Score=132.23 Aligned_cols=100 Identities=13% Similarity=0.137 Sum_probs=85.2
Q ss_pred eeehhhhHHhhhcc--CCCceEEEeecCCCccccccchHHHHHHhhCC-CcEEEEEecccCcchhhhCCccccceEEEEe
Q 005108 613 EEVSSLEQFRAAVS--LPGVSVVHFKSASNLHCKQISPYVETLCGRYP-SINFLKVDIDESPGVAHAENVRIVPTFKIYK 689 (714)
Q Consensus 613 ~~i~~~e~~~~~i~--~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~-~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~ 689 (714)
..+.+.++|...+. ..++++|+||++||++|+.+.|.++++..++. ++.|+.||+++.+++++.|+|.++||+++|+
T Consensus 6 ~~i~~~~~~~~~v~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~i~~~Pt~~~~~ 85 (142)
T 1qgv_A 6 PHLHNGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEVPDFNKMYELYDPCTVMFFF 85 (142)
T ss_dssp CBCCSHHHHHHHHHTCSSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTCCTTTTSSCSCSSCEEEEEE
T ss_pred hccCCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEccccCHHHHHHcCCCCCCEEEEEE
Confidence 34556677776543 46799999999999999999999999999984 5999999999999999999999999999999
Q ss_pred CCeEEE---------EEcCC--CHHHHHHHHhhh
Q 005108 690 NGSRMK---------EIVCP--SRDMLEHSVRHY 712 (714)
Q Consensus 690 ~G~~~~---------~~~g~--~~~~l~~~~~~~ 712 (714)
+|+.+. ++.|. +.++|.+.|+++
T Consensus 86 ~G~~v~~~~g~~~~~~~~g~~~~~~~l~~~i~~~ 119 (142)
T 1qgv_A 86 RNKHIMIDLGTGNNNKINWAMEDKQEMVDIIETV 119 (142)
T ss_dssp TTEEEEEECC------CCSCCSCHHHHHHHHHHH
T ss_pred CCcEEEEecCCCCcceeeeecCcHHHHHHHHHHH
Confidence 999987 45566 488888888764
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.55 E-value=1.2e-14 Score=139.50 Aligned_cols=171 Identities=12% Similarity=0.006 Sum_probs=122.6
Q ss_pred HHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHH
Q 005108 392 RVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVA 471 (714)
Q Consensus 392 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 471 (714)
.+......++++++.+.+.......+. .+..+..+|..++..|++++|+..|++++.+.|.++...
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 75 (198)
T 2fbn_A 10 HSSGRENLYFQGAKKSIYDYTDEEKVQ--------------SAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWD 75 (198)
T ss_dssp ------------CCCSGGGCCHHHHHH--------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCC
T ss_pred hhhhhhhhhhccccCchhhCCHHHHHH--------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccc
Confidence 444555667777776666554433322 377899999999999999999999999999988876100
Q ss_pred HH----HHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC
Q 005108 472 VL----LNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNY 547 (714)
Q Consensus 472 ~~----l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 547 (714)
.. .........+..+|.++...|++++|+.+|+++++++|.+..+++.+|.+|..+|++++|+.+|+++++++|++
T Consensus 76 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 155 (198)
T 2fbn_A 76 DQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNN 155 (198)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc
Confidence 00 00000112223459999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccHHHHH-HHHHHHHH
Q 005108 548 TKALLRRAASNSKLEKWADAV-RDFEVLRR 576 (714)
Q Consensus 548 ~~~~~~la~~~~~~g~~~eA~-~~~~~al~ 576 (714)
..++..++.++..+++.+++. ..|.+++.
T Consensus 156 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 156 LDIRNSYELCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHC-----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999998887 45555443
|
| >2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis} | Back alignment and structure |
|---|
Probab=99.55 E-value=1e-14 Score=126.97 Aligned_cols=97 Identities=18% Similarity=0.343 Sum_probs=87.3
Q ss_pred hhhHHhh-hccCCCceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCcchhhhCCccccceEEEEeC----C
Q 005108 617 SLEQFRA-AVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAHAENVRIVPTFKIYKN----G 691 (714)
Q Consensus 617 ~~e~~~~-~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~----G 691 (714)
+.+.|.. +....+++++.||++||++|+.+.|.++++..+++++.|+.||+++.+++++.|+|.++||+++|++ |
T Consensus 11 ~~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~~~l~~l~~~~~~v~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~~~~~G 90 (118)
T 2f51_A 11 THEALLNRIKEAPGLVLVDFFATWCGPCQRLGQILPSIAEANKDVTFIKVDVDKNGNAADAYGVSSIPALFFVKKEGNEI 90 (118)
T ss_dssp CHHHHHHHHHHCSSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTCHHHHHHTTCCSSSEEEEEEEETTEE
T ss_pred CHHHHHHHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCeEEEEEECCCCHHHHHhcCCCCCCEEEEEeCCCCcc
Confidence 4556663 4445779999999999999999999999999999889999999999999999999999999999998 9
Q ss_pred eEEEEEcCCCHHHHHHHHhhhc
Q 005108 692 SRMKEIVCPSRDMLEHSVRHYS 713 (714)
Q Consensus 692 ~~~~~~~g~~~~~l~~~~~~~~ 713 (714)
+++.++.|...++|+..|+++.
T Consensus 91 ~~~~~~~G~~~~~l~~~~~~~~ 112 (118)
T 2f51_A 91 KTLDQFVGADVSRIKADIEKFK 112 (118)
T ss_dssp EEEEEEESCCHHHHHHHHHHHC
T ss_pred eEEEeecCCCHHHHHHHHHHhh
Confidence 9999999997788999998874
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.55 E-value=9.6e-14 Score=122.23 Aligned_cols=116 Identities=15% Similarity=0.086 Sum_probs=109.6
Q ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCC
Q 005108 434 AYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSN 513 (714)
Q Consensus 434 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~ 513 (714)
+..+..+|..++..|++++|+..|+++++++|++..++..+ |.++...|++++|+..|+++++++|++
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~------------a~~~~~~~~~~~A~~~~~~al~~~p~~ 71 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNR------------AAALAKLMSFPEAIADCNKAIEKDPNF 71 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHH------------HHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence 66899999999999999999999999999999999988866 999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHh
Q 005108 514 SVLYCNRAACWFKLGQWERSVEDSNQALLIQ------PNYTKALLRRAASNSKL 561 (714)
Q Consensus 514 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~ 561 (714)
..+|+.+|.++..+|++++|+..|+++++++ |++..++..++.+..++
T Consensus 72 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~l 125 (126)
T 3upv_A 72 VRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQR 125 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999 99999888888877553
|
| >2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6 | Back alignment and structure |
|---|
Probab=99.55 E-value=2.2e-14 Score=138.47 Aligned_cols=103 Identities=22% Similarity=0.407 Sum_probs=91.5
Q ss_pred cceeeehhhhHHhhhccCC---CceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCcchhhhCCccccceEE
Q 005108 610 GEVEEVSSLEQFRAAVSLP---GVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAHAENVRIVPTFK 686 (714)
Q Consensus 610 ~~~~~i~~~e~~~~~i~~~---~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~ 686 (714)
+.+..+.+.+.|..++... .+++|+||++||++|+.+.|.+.++..+|+++.|++||++ ++.++..|+|.++||++
T Consensus 99 g~v~~i~~~~~f~~~v~~~~~~k~vvV~F~a~wC~~C~~l~p~l~~la~~~~~v~f~~vd~~-~~~l~~~~~i~~~PTl~ 177 (217)
T 2trc_P 99 GFVYELETGEQFLETIEKEQKVTTIVVNIYEDGVRGCDALNSSLECLAAEYPMVKFCKIRAS-NTGAGDRFSSDVLPTLL 177 (217)
T ss_dssp CSEEECCSHHHHHHHHHHSCTTCEEEEEEECTTSTTHHHHHHHHHHHHTTCTTSEEEEEEHH-HHTCSTTSCGGGCSEEE
T ss_pred CeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEEECC-cHHHHHHCCCCCCCEEE
Confidence 3556665667787776433 6899999999999999999999999999999999999999 78899999999999999
Q ss_pred EEeCCeEEEEEcCC-CH-------HHHHHHHhhhc
Q 005108 687 IYKNGSRMKEIVCP-SR-------DMLEHSVRHYS 713 (714)
Q Consensus 687 ~~~~G~~~~~~~g~-~~-------~~l~~~~~~~~ 713 (714)
+|++|+.+.+++|+ +. +.|+.+|.+++
T Consensus 178 ~~~~G~~v~~~~G~~~~~g~~~~~~~Le~~L~~~g 212 (217)
T 2trc_P 178 VYKGGELISNFISVAEQFAEDFFAADVESFLNEYG 212 (217)
T ss_dssp EEETTEEEEEETTGGGGSCSSCCHHHHHHHHHTTT
T ss_pred EEECCEEEEEEeCCcccCcccCCHHHHHHHHHHcC
Confidence 99999999999999 54 89999999875
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=99.54 E-value=4.9e-16 Score=169.48 Aligned_cols=144 Identities=22% Similarity=0.325 Sum_probs=126.4
Q ss_pred HhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCC------------
Q 005108 446 ALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSN------------ 513 (714)
Q Consensus 446 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------------ 513 (714)
.++++++|+..|+++++..|+....+.. +|..+++.|+|++|+..|+++++++|.+
T Consensus 246 ~l~~~~~A~~~~~~~~~~~~~~a~~~~~------------~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~ 313 (457)
T 1kt0_A 246 TLKSFEKAKESWEMDTKEKLEQAAIVKE------------KGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASE 313 (457)
T ss_dssp EEEEEECCCCGGGSCHHHHHHHHHHHHH------------HHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHH
T ss_pred hhhhcccCcchhhcCHHHHHHHHHHHHH------------HHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHH
Confidence 4567778888888777777666666554 4999999999999999999999999998
Q ss_pred ---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 005108 514 ---SVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAESLFH 590 (714)
Q Consensus 514 ---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~L~~ 590 (714)
..+|+++|.||.++|+|++|+.+|+++++++|++..+|+++|.+|..+|++++|+.+|+++++++|++..++..+..
T Consensus 314 ~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~ 393 (457)
T 1kt0_A 314 SFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISM 393 (457)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhccc
Q 005108 591 AQVSLKKSRGE 601 (714)
Q Consensus 591 ~~~~l~~~~~~ 601 (714)
++..+++....
T Consensus 394 ~~~~~~~~~~a 404 (457)
T 1kt0_A 394 CQKKAKEHNER 404 (457)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 98888766543
|
| >2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.54 E-value=9.5e-15 Score=130.45 Aligned_cols=99 Identities=21% Similarity=0.316 Sum_probs=86.7
Q ss_pred ceeeehhhhHHhhhccCC---CceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCcchhhhCCccccceEEE
Q 005108 611 EVEEVSSLEQFRAAVSLP---GVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAHAENVRIVPTFKI 687 (714)
Q Consensus 611 ~~~~i~~~e~~~~~i~~~---~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~ 687 (714)
.+..+ +.++|...+... .+++|+||++||++|+.+.|.++++..+++++.|+.||+++.. +.|+|.++||+++
T Consensus 11 ~v~~i-~~~~~~~~v~~~~~~~~vvv~f~a~wC~~C~~~~p~l~~la~~~~~v~~~~vd~~~~~---~~~~i~~~Pt~~~ 86 (135)
T 2dbc_A 11 ELREI-SGNQYVNEVTNAEKDLWVVIHLYRSSVPMCLVVNQHLSVLARKFPETKFVKAIVNSCI---EHYHDNCLPTIFV 86 (135)
T ss_dssp SCEEC-CHHHHHHHTTTCCSSCEEEEEECCTTCHHHHHHHHHHHHHHHHCSSEEEEEECCSSSC---SSCCSSCCSEEEE
T ss_pred ceEEc-CHHHHHHHHHhcCCCCEEEEEEECCCChHHHHHHHHHHHHHHHCCCcEEEEEEhhcCc---ccCCCCCCCEEEE
Confidence 45566 567777766442 4899999999999999999999999999999999999999875 7899999999999
Q ss_pred EeCCeEEEEEcCC--------CHHHHHHHHhhhc
Q 005108 688 YKNGSRMKEIVCP--------SRDMLEHSVRHYS 713 (714)
Q Consensus 688 ~~~G~~~~~~~g~--------~~~~l~~~~~~~~ 713 (714)
|++|+.+.+++|. +.++|+.+|.+++
T Consensus 87 ~~~G~~v~~~~G~~~~~~~~~~~~~l~~~l~~~~ 120 (135)
T 2dbc_A 87 YKNGQIEGKFIGIIECGGINLKLEELEWKLSEVG 120 (135)
T ss_dssp ESSSSCSEEEESTTTTTCTTCCHHHHHHHHHHHT
T ss_pred EECCEEEEEEEeEEeeCCCcCCHHHHHHHHHHcC
Confidence 9999999999998 5899999998875
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=99.54 E-value=8.9e-14 Score=124.18 Aligned_cols=123 Identities=23% Similarity=0.369 Sum_probs=111.8
Q ss_pred cCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 005108 463 IDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALL 542 (714)
Q Consensus 463 ~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 542 (714)
.++.+...+..+ |..++..|++++|+.+|+++++.+|++..+++++|.++..+|++++|+..|+++++
T Consensus 4 ~~~~~~~~~~~~------------g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 71 (137)
T 3q49_B 4 MKSPSAQELKEQ------------GNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALE 71 (137)
T ss_dssp --CCCHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CccccHHHHHHH------------HHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 355666666655 99999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHhhh
Q 005108 543 IQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPD-----DNEIAESLFHAQVSLKK 597 (714)
Q Consensus 543 ~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~-----~~~~~~~L~~~~~~l~~ 597 (714)
++|++..+++.+|.++..+|++++|+.+|+++++++|+ +..+...+..+......
T Consensus 72 ~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~~~ 131 (137)
T 3q49_B 72 LDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWN 131 (137)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHH
T ss_pred hCchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998 78888888877766544
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=1.7e-13 Score=152.58 Aligned_cols=175 Identities=10% Similarity=-0.048 Sum_probs=162.0
Q ss_pred HHcCC-HHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhccCC
Q 005108 397 LKLHQ-LEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGR----------FENAVTAAEKAGQIDP 465 (714)
Q Consensus 397 ~~~g~-~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~p 465 (714)
.+.++ .++|++.+.+++..+|++ ..+|+.++.++..+++ ++++++.++++++.+|
T Consensus 39 ~~~~~~~eeal~~~~~~l~~nP~~--------------~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~p 104 (567)
T 1dce_A 39 RQAGELDESVLELTSQILGANPDF--------------ATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP 104 (567)
T ss_dssp HHTTCCSHHHHHHHHHHHHHCTTC--------------HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHcCCCCHHHHHHHHHHHHHCchh--------------HHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCC
Confidence 34444 467899999999999999 8899999999999998 9999999999999999
Q ss_pred CCHHHHHHHHhHHHHHHHHHHHhHHhhCc--CHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhC-CHHHHHHHHHHHHH
Q 005108 466 RNVEVAVLLNNVKLVARARARGNDLFKSE--RFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLG-QWERSVEDSNQALL 542 (714)
Q Consensus 466 ~~~~~~~~l~~l~~~~~~~~~g~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~ 542 (714)
++..+|... +.++.+.+ ++++|+++++++++++|.+..+|.+++.++.++| .+++++++++++++
T Consensus 105 K~y~aW~hR------------~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~ 172 (567)
T 1dce_A 105 KSYGTWHHR------------CWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLIT 172 (567)
T ss_dssp TCHHHHHHH------------HHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTT
T ss_pred CCHHHHHHH------------HHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 999999865 89999999 7799999999999999999999999999999999 99999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHh--------------ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhh
Q 005108 543 IQPNYTKALLRRAASNSKL--------------EKWADAVRDFEVLRRELPDDNEIAESLFHAQVSLKK 597 (714)
Q Consensus 543 ~~p~~~~~~~~la~~~~~~--------------g~~~eA~~~~~~al~~~p~~~~~~~~L~~~~~~l~~ 597 (714)
.+|.+..+|..++.++.++ +++++|+++++++++++|++..++..+..+......
T Consensus 173 ~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 173 RNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp TTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCC
T ss_pred HCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCC
Confidence 9999999999999999885 778999999999999999999999999887766543
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=99.54 E-value=2.2e-13 Score=139.27 Aligned_cols=175 Identities=14% Similarity=0.040 Sum_probs=138.0
Q ss_pred HHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHH
Q 005108 390 MCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVE 469 (714)
Q Consensus 390 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 469 (714)
...+..+...|++++|++.++++++..+... ........++.+|.++...|++++|+.+|++++++.+....
T Consensus 79 ~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~ 150 (293)
T 2qfc_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHP--------EFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGID 150 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCCCH--------HHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSC
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhccccCCh--------hHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCc
Confidence 3477888899999999999999888776541 01112345677899999999999999999999986554321
Q ss_pred HHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhh---ccCCCCH----HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 005108 470 VAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGL---RFDPSNS----VLYCNRAACWFKLGQWERSVEDSNQALL 542 (714)
Q Consensus 470 ~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al---~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~ 542 (714)
.+. .+..+..+|.+|...|++++|+.+|++++ +..+++. .+++++|.+|..+|++++|+.+|+++++
T Consensus 151 ~~~------~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~ 224 (293)
T 2qfc_A 151 VYQ------NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIE 224 (293)
T ss_dssp TTH------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHH------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHH
Confidence 110 01122345999999999999999999999 4455542 6899999999999999999999999998
Q ss_pred hCCC------CHHHHHHHHHHHHHhccHHHH-HHHHHHHHHhC
Q 005108 543 IQPN------YTKALLRRAASNSKLEKWADA-VRDFEVLRREL 578 (714)
Q Consensus 543 ~~p~------~~~~~~~la~~~~~~g~~~eA-~~~~~~al~~~ 578 (714)
+.++ ...+++++|.+|..+|++++| ..+|++++.+.
T Consensus 225 ~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~ 267 (293)
T 2qfc_A 225 ISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 7533 268899999999999999999 88899998754
|
| >1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.53 E-value=1.2e-14 Score=127.91 Aligned_cols=95 Identities=28% Similarity=0.404 Sum_probs=85.9
Q ss_pred hHHhhhcc--CCCceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecc-cCcchhhhCCccccceEEEEeCCeEEE
Q 005108 619 EQFRAAVS--LPGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDID-ESPGVAHAENVRIVPTFKIYKNGSRMK 695 (714)
Q Consensus 619 e~~~~~i~--~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d-~~~~l~~~~~v~~~Pt~~~~~~G~~~~ 695 (714)
+.|...+. .+++++++||++||++|+.+.|.++++..+++++.|+.||++ +.+++++.|+|.++||++++++|+.+.
T Consensus 26 ~~~~~~~~~~~~~~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~~~~~vd~~~~~~~~~~~~~v~~~Pt~~~~~~G~~~~ 105 (124)
T 1faa_A 26 DTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLDVIFLKLDCNQENKTLAKELGIRVVPTFKILKENSVVG 105 (124)
T ss_dssp TTHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEECSSTTHHHHHHHCCSSSSEEEEEETTEEEE
T ss_pred hhHHHHHHhcCCCEEEEEEECCcCHhHHHHhHHHHHHHHHCCCCEEEEEecCcchHHHHHHcCCCeeeEEEEEeCCcEEE
Confidence 45655554 567899999999999999999999999999999999999998 689999999999999999999999999
Q ss_pred EEcCCCHHHHHHHHhhhc
Q 005108 696 EIVCPSRDMLEHSVRHYS 713 (714)
Q Consensus 696 ~~~g~~~~~l~~~~~~~~ 713 (714)
++.|...++|.++|+++.
T Consensus 106 ~~~G~~~~~l~~~i~~~~ 123 (124)
T 1faa_A 106 EVTGAKYDKLLEAIQAAR 123 (124)
T ss_dssp EEESSCHHHHHHHHHHHT
T ss_pred EEcCCCHHHHHHHHHHhh
Confidence 999998899999998763
|
| >3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.53 E-value=8.8e-15 Score=129.51 Aligned_cols=92 Identities=23% Similarity=0.234 Sum_probs=84.4
Q ss_pred HhhhccCCCceEEEeecCCCccccccchHHHHHHhhCC-CcEEEEEecccCcchhhhCCccccceEEEEeCCeEEEEEcC
Q 005108 621 FRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYP-SINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKEIVC 699 (714)
Q Consensus 621 ~~~~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~-~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~~~~g 699 (714)
+.......++++|+||++||++|+.+.|.++++..+++ ++.|+.||+++.+++++.|+|.++||+++|++|+++.++.|
T Consensus 35 ~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~~~~G 114 (128)
T 3ul3_B 35 INGVNMKNTVIVLYFFAKWCQACTMQSTEMDKLQKYYGKRIYLLKVDLDKNESLARKFSVKSLPTIILLKNKTMLARKDH 114 (128)
T ss_dssp SSBTTSCCSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGEEEEEEEGGGCHHHHHHTTCCSSSEEEEEETTEEEEEESS
T ss_pred HHHHHccCCEEEEEEECCCCHHHHHHhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCCCcCEEEEEECCEEEEEecC
Confidence 34444567799999999999999999999999999986 59999999999999999999999999999999999999999
Q ss_pred C-CHHHHHHHHhhh
Q 005108 700 P-SRDMLEHSVRHY 712 (714)
Q Consensus 700 ~-~~~~l~~~~~~~ 712 (714)
. +.++|+++|+++
T Consensus 115 ~~~~~~l~~~l~~~ 128 (128)
T 3ul3_B 115 FVSSNDLIALIKKH 128 (128)
T ss_dssp CCCHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHhC
Confidence 8 999999999864
|
| >3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.1e-14 Score=129.61 Aligned_cols=101 Identities=19% Similarity=0.392 Sum_probs=89.8
Q ss_pred ceeeehhhhHHhhhccC--CCceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCcchhhhCCccccceEEEE
Q 005108 611 EVEEVSSLEQFRAAVSL--PGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAHAENVRIVPTFKIY 688 (714)
Q Consensus 611 ~~~~i~~~e~~~~~i~~--~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~ 688 (714)
.+..+.+.+.+...+.. ..+++|+||++||++|+.+.|.++++..++ ++.|+.||+++.+++++.|+|.++||+++|
T Consensus 21 ~v~~l~~~~~~~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~-~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~ 99 (133)
T 3cxg_A 21 IYIELKNTGSLNQVFSSTQNSSIVIKFGAVWCKPCNKIKEYFKNQLNYY-YVTLVDIDVDIHPKLNDQHNIKALPTFEFY 99 (133)
T ss_dssp EEEECCCTTHHHHHHTC-CCSEEEEEEECTTCHHHHHTHHHHHGGGGTE-ECEEEEEETTTCHHHHHHTTCCSSSEEEEE
T ss_pred cEEEecChhHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHhc-CEEEEEEeccchHHHHHhcCCCCCCEEEEE
Confidence 45666666778777755 358999999999999999999999998887 689999999999999999999999999999
Q ss_pred e--CCe--EEEEEcCCCHHHHHHHHhhh
Q 005108 689 K--NGS--RMKEIVCPSRDMLEHSVRHY 712 (714)
Q Consensus 689 ~--~G~--~~~~~~g~~~~~l~~~~~~~ 712 (714)
+ +|+ ++.++.|.+.++|+++|+++
T Consensus 100 ~~~~g~g~~~~~~~G~~~~~l~~~l~~~ 127 (133)
T 3cxg_A 100 FNLNNEWVLVHTVEGANQNDIEKAFQKY 127 (133)
T ss_dssp EEETTEEEEEEEEESCCHHHHHHHHHHH
T ss_pred EecCCCeEEEEEEcCCCHHHHHHHHHHH
Confidence 7 999 89999999999999999875
|
| >1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A | Back alignment and structure |
|---|
Probab=99.53 E-value=3e-14 Score=124.31 Aligned_cols=101 Identities=26% Similarity=0.344 Sum_probs=89.5
Q ss_pred eeeehhhhHHhhh-ccCCCceEEEeecCCCccccccchHHHHHHhhCC-CcEEEEEecccCcchhhhCCccccceEEEEe
Q 005108 612 VEEVSSLEQFRAA-VSLPGVSVVHFKSASNLHCKQISPYVETLCGRYP-SINFLKVDIDESPGVAHAENVRIVPTFKIYK 689 (714)
Q Consensus 612 ~~~i~~~e~~~~~-i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~-~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~ 689 (714)
.....+.++|... +...+++++.||++||++|+.+.|.++++..++. ++.|+.||+++.+++++.|+|.++||+++|+
T Consensus 14 ~~~~~~~~~f~~~v~~~~k~vlv~f~a~~C~~C~~~~~~l~~~~~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~ 93 (119)
T 1w4v_A 14 TFNIQDGPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTVLAMK 93 (119)
T ss_dssp EEECCSHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTSSEEEEEETTTTHHHHHHTTCCSSSEEEEEE
T ss_pred EEEecChhhHHHHHHcCCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCCHHHHHHcCCCcccEEEEEe
Confidence 3444555667664 4556799999999999999999999999999885 6999999999999999999999999999999
Q ss_pred CCeEEEEEcCC-CHHHHHHHHhhh
Q 005108 690 NGSRMKEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 690 ~G~~~~~~~g~-~~~~l~~~~~~~ 712 (714)
+|+.+.++.|. +.+.|.++|+++
T Consensus 94 ~G~~~~~~~G~~~~~~l~~~l~~~ 117 (119)
T 1w4v_A 94 NGDVVDKFVGIKDEDQLEAFLKKL 117 (119)
T ss_dssp TTEEEEEEESCCCHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCHHHHHHHHHHH
Confidence 99999999999 999999999875
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.53 E-value=1e-13 Score=122.43 Aligned_cols=106 Identities=31% Similarity=0.390 Sum_probs=96.4
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc-------HHH
Q 005108 240 GDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNY-------WRA 312 (714)
Q Consensus 240 ~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~a 312 (714)
+.+.++..+|..+++.|+|++|+.+|+++++++|+++.+|.++|.+|..+|++++|+..|+++++++|++ ..+
T Consensus 6 d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~ 85 (127)
T 4gcn_A 6 DAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKA 85 (127)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHH
Confidence 3567888999999999999999999999999999999999999999999999999999999999998765 458
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhhcC-CCChHHH
Q 005108 313 HQRLGSLLVRLGQVENARRHLCLSGQ-QADPTEV 345 (714)
Q Consensus 313 ~~~la~~~~~~g~~~~A~~~~~~al~-~~~~~~~ 345 (714)
|..+|.++..+|++++|+.+|++++. .+++...
T Consensus 86 ~~~lg~~~~~~~~~~~A~~~~~kal~~~~~~~~~ 119 (127)
T 4gcn_A 86 MSRAGNAFQKQNDLSLAVQWFHRSLSEFRDPELV 119 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSCCHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCcCHHHH
Confidence 99999999999999999999999987 4555443
|
| >3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A 3uj1_A | Back alignment and structure |
|---|
Probab=99.53 E-value=1.5e-14 Score=124.39 Aligned_cols=96 Identities=21% Similarity=0.370 Sum_probs=86.7
Q ss_pred hhhHHhhhccCCCceEEEeecCCCccccccchHHHHHHhhC----CCcEEEEEecccCcchhhhCCccccceEEEEeCCe
Q 005108 617 SLEQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRY----PSINFLKVDIDESPGVAHAENVRIVPTFKIYKNGS 692 (714)
Q Consensus 617 ~~e~~~~~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~----~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~ 692 (714)
+.+.|...+. .+++++.||++||++|+.+.|.++++..++ +++.|+.||+++.+++++.|+|.++||+++|++|+
T Consensus 11 ~~~~~~~~~~-~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~g~ 89 (111)
T 3uvt_A 11 TENNFDDTIA-EGITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAERNICSKYSVRGYPTLLLFRGGK 89 (111)
T ss_dssp CTTTHHHHHH-SSEEEEEEECSSCHHHHHHHHHHHHHHTCCCCC-CCEEEEEEETTTCHHHHHHTTCCSSSEEEEEETTE
T ss_pred ChhhHHHHhc-CCcEEEEEECCCChhHHHhhHHHHHHHHHhhccCCceEEEEEeccccHhHHHhcCCCcccEEEEEeCCc
Confidence 3456666665 679999999999999999999999999887 36999999999999999999999999999999999
Q ss_pred EEEEEcCC-CHHHHHHHHhhhc
Q 005108 693 RMKEIVCP-SRDMLEHSVRHYS 713 (714)
Q Consensus 693 ~~~~~~g~-~~~~l~~~~~~~~ 713 (714)
.+.++.|. +.+.|.++|++.+
T Consensus 90 ~~~~~~g~~~~~~l~~~l~~~a 111 (111)
T 3uvt_A 90 KVSEHSGGRDLDSLHRFVLSQA 111 (111)
T ss_dssp EEEEECSCCSHHHHHHHHHHHC
T ss_pred EEEeccCCcCHHHHHHHHHhcC
Confidence 99999999 9999999998753
|
| >2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A | Back alignment and structure |
|---|
Probab=99.53 E-value=1.5e-14 Score=122.63 Aligned_cols=94 Identities=27% Similarity=0.512 Sum_probs=86.9
Q ss_pred hHHhhhccCCCceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCcchhhhCCccccceEEEEeCCeEEEEEc
Q 005108 619 EQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKEIV 698 (714)
Q Consensus 619 e~~~~~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~~~~ 698 (714)
+.|...+...+++++.||++||++|+.+.|.++++...++++.|+.+|+++.+++++.|+|.++||+++|++|+.+.++.
T Consensus 7 ~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~ 86 (104)
T 2e0q_A 7 KNFDSFLASHEIAVVDFWAEWCAPCLILAPIIEELAEDYPQVGFGKLNSDENPDIAARYGVMSLPTVIFFKDGEPVDEII 86 (104)
T ss_dssp TTHHHHHHHSSEEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTCHHHHHHTTCCSSCEEEEEETTEEEEEEE
T ss_pred HHHHHHHhcCCcEEEEEECCCChhHHHHhHHHHHHHHHcCCceEEEEECCCCHHHHHhCCccccCEEEEEECCeEhhhcc
Confidence 45666666677999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred CC-CHHHHHHHHhhh
Q 005108 699 CP-SRDMLEHSVRHY 712 (714)
Q Consensus 699 g~-~~~~l~~~~~~~ 712 (714)
|. +.+.|.++|+++
T Consensus 87 g~~~~~~l~~~l~~~ 101 (104)
T 2e0q_A 87 GAVPREEIEIRIKNL 101 (104)
T ss_dssp SCCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 99 999999999875
|
| >1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.53 E-value=2.6e-14 Score=122.04 Aligned_cols=94 Identities=26% Similarity=0.534 Sum_probs=85.3
Q ss_pred hHHhhh-ccCCCceEEEeecCCCccccccchHHHHHHhhCC-CcEEEEEecccCcchhhhCCccccceEEEEeCCeEEEE
Q 005108 619 EQFRAA-VSLPGVSVVHFKSASNLHCKQISPYVETLCGRYP-SINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKE 696 (714)
Q Consensus 619 e~~~~~-i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~-~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~~ 696 (714)
+.|... ....+++++.||++||++|+.+.|.++++..+++ .+.|+.||+++.+++++.|+|.++||+++|++|+.+.+
T Consensus 9 ~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~G~~~~~ 88 (107)
T 1dby_A 9 DTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDESPNVASEYGIRSIPTIMVFKGGKKCET 88 (107)
T ss_dssp HHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHHTCCSSCEEEEESSSSEEEE
T ss_pred HHHHHHHhcCCCcEEEEEECCCCHhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHHHHHCCCCcCCEEEEEeCCEEEEE
Confidence 455554 3556789999999999999999999999999997 49999999999999999999999999999999999999
Q ss_pred EcCC-CHHHHHHHHhhh
Q 005108 697 IVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 697 ~~g~-~~~~l~~~~~~~ 712 (714)
+.|. +.++|+++|+++
T Consensus 89 ~~G~~~~~~l~~~l~~~ 105 (107)
T 1dby_A 89 IIGAVPKATIVQTVEKY 105 (107)
T ss_dssp EESCCCHHHHHHHHHHH
T ss_pred EeCCCCHHHHHHHHHHH
Confidence 9999 999999999875
|
| >2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti} | Back alignment and structure |
|---|
Probab=99.53 E-value=2.9e-14 Score=121.66 Aligned_cols=94 Identities=23% Similarity=0.417 Sum_probs=85.4
Q ss_pred hHHhhh-ccCCCceEEEeecCCCccccccchHHHHHHhhCC-CcEEEEEecccCcchhhhCCccccceEEEEeCCeEEEE
Q 005108 619 EQFRAA-VSLPGVSVVHFKSASNLHCKQISPYVETLCGRYP-SINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKE 696 (714)
Q Consensus 619 e~~~~~-i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~-~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~~ 696 (714)
++|... ....+++++.||++||++|+.+.|.++++..+++ ++.|+.||+++.+++++.|+|.++||+++|++|+.+.+
T Consensus 10 ~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~G~~~~~ 89 (107)
T 2i4a_A 10 SSFDQDVLKASGLVLVDFWAEWCGPCKMIGPALGEIGKEFAGKVTVAKVNIDDNPETPNAYQVRSIPTLMLVRDGKVIDK 89 (107)
T ss_dssp TTHHHHTTTCSSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTSEEEEEEETTTCCHHHHHTTCCSSSEEEEEETTEEEEE
T ss_pred hhhhHHHHhCCCEEEEEEECCCChhHHHHhHHHHHHHHHhCCcEEEEEEECCCCHHHHHhcCCCccCEEEEEeCCEEEEE
Confidence 455543 3567799999999999999999999999999987 59999999999999999999999999999999999999
Q ss_pred EcCC-CHHHHHHHHhhh
Q 005108 697 IVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 697 ~~g~-~~~~l~~~~~~~ 712 (714)
+.|. +.+.|.++|+++
T Consensus 90 ~~G~~~~~~l~~~l~~~ 106 (107)
T 2i4a_A 90 KVGALPKSQLKAWVESA 106 (107)
T ss_dssp EESCCCHHHHHHHHHHT
T ss_pred ecCCCCHHHHHHHHHhc
Confidence 9999 999999999875
|
| >1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.52 E-value=2.6e-14 Score=125.26 Aligned_cols=94 Identities=26% Similarity=0.461 Sum_probs=81.0
Q ss_pred hHHh-hhccCCCceEEEeecCCCc--------------cccccchHHHHHHhhCC-CcEEEEEecccCcchhhhCCcccc
Q 005108 619 EQFR-AAVSLPGVSVVHFKSASNL--------------HCKQISPYVETLCGRYP-SINFLKVDIDESPGVAHAENVRIV 682 (714)
Q Consensus 619 e~~~-~~i~~~~~~vv~f~a~~c~--------------~C~~~~p~l~~l~~~~~-~~~~~~vd~d~~~~l~~~~~v~~~ 682 (714)
++|. .++..+++++++||++||+ +|+.+.|.++++..+++ ++.|++||+++.+++++.|+|.++
T Consensus 11 ~~f~~~~~~~~k~vlv~F~a~wC~~c~~l~~~~~~~~~~C~~~~p~~~~l~~~~~~~~~~~~vd~d~~~~l~~~~~v~~~ 90 (123)
T 1oaz_A 11 DSFDTDVLKADGAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGI 90 (123)
T ss_dssp TTHHHHTTSCSSEEEEEEECSSCSCBSSSTTSCCSCCCCCCTTHHHHTTC-------CEEEEEETTSCTTTGGGGTCCBS
T ss_pred hhHHHHHHhCCCeEEEEEECCCCccccccccccccCCCCcHHHHHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCCcc
Confidence 4565 3456678999999999999 99999999999998886 599999999999999999999999
Q ss_pred ceEEEEeCCeEEEEEcCC-CHHHHHHHHhhh
Q 005108 683 PTFKIYKNGSRMKEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 683 Pt~~~~~~G~~~~~~~g~-~~~~l~~~~~~~ 712 (714)
||+++|++|+.+.++.|. +.++|+++|+++
T Consensus 91 Pt~~~~~~G~~~~~~~G~~~~~~l~~~l~~~ 121 (123)
T 1oaz_A 91 PTLLLFKNGEVAATKVGALSKGQLKEFLDAN 121 (123)
T ss_dssp SEEEEEESSSEEEEEESCCCHHHHHHHHTTT
T ss_pred CEEEEEECCEEEEEEeCCCCHHHHHHHHHHH
Confidence 999999999999999999 999999999875
|
| >3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=99.52 E-value=2.1e-14 Score=130.60 Aligned_cols=101 Identities=17% Similarity=0.326 Sum_probs=90.7
Q ss_pred ceeeehhhhHHhhhccCCCceEEEeecCCCccccccchHHHHHHhhCC-CcEEEEEecccCcchhhhCCccccceEEEEe
Q 005108 611 EVEEVSSLEQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYP-SINFLKVDIDESPGVAHAENVRIVPTFKIYK 689 (714)
Q Consensus 611 ~~~~i~~~e~~~~~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~-~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~ 689 (714)
....+.. +.|...+...++++|+||++||++|+.+.|.++++..++. ++.|+.||+++.+++++.|+|.++||+++|+
T Consensus 39 ~v~~l~~-~~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~ 117 (148)
T 3p2a_A 39 EVINATA-ETLDKLLQDDLPMVIDFWAPWCGPCRSFAPIFAETAAERAGKVRFVKVNTEAEPALSTRFRIRSIPTIMLYR 117 (148)
T ss_dssp CCEECCT-TTHHHHTTCSSCEEEEEECSSCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCSSSEEEEEE
T ss_pred CceecCH-HHHHHHHhcCCcEEEEEECCCCHHHHHHHHHHHHHHHHcCCceEEEEEECcCCHHHHHHCCCCccCEEEEEE
Confidence 3333333 6777777778899999999999999999999999999984 6999999999999999999999999999999
Q ss_pred CCeEEEEEcCC-CHHHHHHHHhhh
Q 005108 690 NGSRMKEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 690 ~G~~~~~~~g~-~~~~l~~~~~~~ 712 (714)
+|+.+.++.|. +.+.|.++|+++
T Consensus 118 ~G~~~~~~~G~~~~~~l~~~l~~~ 141 (148)
T 3p2a_A 118 NGKMIDMLNGAVPKAPFDNWLDEQ 141 (148)
T ss_dssp TTEEEEEESSCCCHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCHHHHHHHHHHH
Confidence 99999999999 999999999875
|
| >1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C | Back alignment and structure |
|---|
Probab=99.52 E-value=5.4e-14 Score=137.35 Aligned_cols=103 Identities=23% Similarity=0.396 Sum_probs=90.1
Q ss_pred cceeeehhhhHHhhhccC---CCceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCcchhhhCCccccceEE
Q 005108 610 GEVEEVSSLEQFRAAVSL---PGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAHAENVRIVPTFK 686 (714)
Q Consensus 610 ~~~~~i~~~e~~~~~i~~---~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~ 686 (714)
+.+..+.+.+.|...+.. ..+++|+||++||++|+.+.|.+.+|..+|+++.|++||++. +.++..|+|.++||++
T Consensus 112 G~V~ei~s~~~f~~~v~~~~~~k~VvV~Fya~wC~~Ck~l~p~l~~La~~~~~v~f~kVd~d~-~~l~~~~~I~~~PTll 190 (245)
T 1a0r_P 112 GFVYELESGEQFLETIEKEQKITTIVVHIYEDGIKGCDALNSSLICLAAEYPMVKFCKIKASN-TGAGDRFSSDVLPTLL 190 (245)
T ss_dssp CSEEECCSHHHHHHHHHSSCTTCEEEEEEECTTSTTHHHHHHHHHHHHHHCTTSEEEEEEHHH-HCCTTSSCTTTCSEEE
T ss_pred CeEEEeCCHHHHHHHHHHhcCCCEEEEEEECCCChHHHHHHHHHHHHHHHCCCCEEEEEeCCc-HHHHHHCCCCCCCEEE
Confidence 355666666788877743 568999999999999999999999999999999999999988 7899999999999999
Q ss_pred EEeCCeEEEEEcCC-C-------HHHHHHHHhhhc
Q 005108 687 IYKNGSRMKEIVCP-S-------RDMLEHSVRHYS 713 (714)
Q Consensus 687 ~~~~G~~~~~~~g~-~-------~~~l~~~~~~~~ 713 (714)
+|++|+.+.+++|+ . .+.|+.+|.+++
T Consensus 191 ~~~~G~~v~~~vG~~~~~g~~~~~e~Le~~L~~~g 225 (245)
T 1a0r_P 191 VYKGGELLSNFISVTEQLAEEFFTGDVESFLNEYG 225 (245)
T ss_dssp EEETTEEEEEETTGGGGSCTTCCHHHHHHHHHTTT
T ss_pred EEECCEEEEEEeCCcccccccccHHHHHHHHHHcC
Confidence 99999999999997 2 457999998865
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.52 E-value=4.9e-13 Score=134.50 Aligned_cols=260 Identities=14% Similarity=0.070 Sum_probs=191.0
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 005108 240 GDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRN-AAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGS 318 (714)
Q Consensus 240 ~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~ 318 (714)
.+++.++.+ +..|-.|+|..++.... +..|.+ ....+.+.++|+.+|++.... .++....+...++.
T Consensus 12 ~~~~~lf~i-kn~fy~G~yq~~i~e~~---~~~~~~~~~~~~~~~Rs~iAlg~~~~~~--------~~~~~~~a~~~la~ 79 (310)
T 3mv2_B 12 QDPMDYFNI-KQNYYTGNFVQCLQEIE---KFSKVTDNTLLFYKAKTLLALGQYQSQD--------PTSKLGKVLDLYVQ 79 (310)
T ss_dssp ---CCTHHH-HHHHTTTCHHHHTHHHH---TSSCCCCHHHHHHHHHHHHHTTCCCCCC--------SSSTTHHHHHHHHH
T ss_pred CCcHHHHHH-HHHHHhhHHHHHHHHHH---hcCccchHHHHHHHHHHHHHcCCCccCC--------CCCHHHHHHHHHHH
Confidence 345555543 45677899999998543 344443 456677889999999987421 12223334455554
Q ss_pred HHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHH
Q 005108 319 LLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGA-DFSPQLSMCRVEALL 397 (714)
Q Consensus 319 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p-~~~~~~~~~la~~~~ 397 (714)
.+. ++ |+..|++.+....+... .++.++.++...|++++|++.+.+.+..+| ....+.+...+.++.
T Consensus 80 ~~~--~~---a~~~l~~l~~~~~~~~~-------~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L 147 (310)
T 3mv2_B 80 FLD--TK---NIEELENLLKDKQNSPY-------ELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVAL 147 (310)
T ss_dssp HHT--TT---CCHHHHHTTTTSCCCHH-------HHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHH
T ss_pred Hhc--cc---HHHHHHHHHhcCCCCcH-------HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHH
Confidence 442 22 88889888764322221 123566778889999999999999998887 346777788999999
Q ss_pred HcCCHHHHHHHhhccccCCCC-----CCCchhhhhhhhhhhHHHHHHHHHHHHHhC--cHHHHHHHHHHHhccCCCCHHH
Q 005108 398 KLHQLEDAESSLSNIPKIEPS-----TVSSSQTRFFGMLSEAYTFFVRAQIEMALG--RFENAVTAAEKAGQIDPRNVEV 470 (714)
Q Consensus 398 ~~g~~~~A~~~~~~al~~~p~-----~~~~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~~ 470 (714)
++|+.+.|.+.++++.+.+|+ + ...+...-+++.+..| ++++|..+|+++.+..|+....
T Consensus 148 ~~~r~d~A~k~l~~~~~~~~d~~~~~d-------------~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~ 214 (310)
T 3mv2_B 148 LNNNVSTASTIFDNYTNAIEDTVSGDN-------------EMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQ 214 (310)
T ss_dssp HTTCHHHHHHHHHHHHHHSCHHHHHHH-------------HHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHH
T ss_pred HCCCHHHHHHHHHHHHhcCccccccch-------------HHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccH
Confidence 999999999999999998882 2 1333444455566667 9999999999998888862222
Q ss_pred HHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhcc----------CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 005108 471 AVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRF----------DPSNSVLYCNRAACWFKLGQWERSVEDSNQA 540 (714)
Q Consensus 471 ~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~----------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 540 (714)
...+ . ++..+|++++|...++.+++. +|+++.++.+++.+...+|+ +|.++++++
T Consensus 215 ~lLl------------n-~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL 279 (310)
T 3mv2_B 215 LGLL------------N-LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQL 279 (310)
T ss_dssp HHHH------------H-HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHH
T ss_pred HHHH------------H-HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHH
Confidence 2222 3 799999999999999988876 48899999999999999998 999999999
Q ss_pred HHhCCCCHHHH
Q 005108 541 LLIQPNYTKAL 551 (714)
Q Consensus 541 l~~~p~~~~~~ 551 (714)
.+.+|+++.+.
T Consensus 280 ~~~~P~hp~i~ 290 (310)
T 3mv2_B 280 VKLDHEHAFIK 290 (310)
T ss_dssp HHTTCCCHHHH
T ss_pred HHhCCCChHHH
Confidence 99999998544
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.52 E-value=7.9e-14 Score=121.99 Aligned_cols=99 Identities=13% Similarity=0.109 Sum_probs=90.2
Q ss_pred HHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccH
Q 005108 485 ARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKW 564 (714)
Q Consensus 485 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 564 (714)
.+|..+...|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+..|+++++++|++..+++.+|.+|..+|++
T Consensus 22 ~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~ 101 (121)
T 1hxi_A 22 EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNA 101 (121)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 34999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCHH
Q 005108 565 ADAVRDFEVLRRELPDDNE 583 (714)
Q Consensus 565 ~eA~~~~~~al~~~p~~~~ 583 (714)
++|+..|+++++++|++..
T Consensus 102 ~~A~~~~~~al~~~P~~~~ 120 (121)
T 1hxi_A 102 NAALASLRAWLLSQPQYEQ 120 (121)
T ss_dssp HHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHhCcCCCC
Confidence 9999999999999998754
|
| >1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.52 E-value=6.5e-14 Score=121.24 Aligned_cols=100 Identities=19% Similarity=0.293 Sum_probs=88.3
Q ss_pred eeeehhhhHHhhh-ccCCCceEEEeecCCCccccccchHHHHHHhhCC-CcEEEEEecccCcchhhhCCccccceEEEEe
Q 005108 612 VEEVSSLEQFRAA-VSLPGVSVVHFKSASNLHCKQISPYVETLCGRYP-SINFLKVDIDESPGVAHAENVRIVPTFKIYK 689 (714)
Q Consensus 612 ~~~i~~~e~~~~~-i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~-~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~ 689 (714)
+..+. .++|... +...+++++.||++||++|+.+.|.++++..+++ .+.|+.||+++.+++++.|+|.++||+++|+
T Consensus 9 v~~l~-~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~ 87 (115)
T 1thx_A 9 VITIT-DAEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEIDPNPTTVKKYKVEGVPALRLVK 87 (115)
T ss_dssp EEECC-GGGHHHHTTTCSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTTTCEEEEEESTTCHHHHHHTTCCSSSEEEEEE
T ss_pred eEEee-ccchhhHhhcCCceEEEEEECCCCHHHHHhHHHHHHHHHHhCCcEEEEEEEcCCCHHHHHHcCCCceeEEEEEc
Confidence 33443 3556654 4567799999999999999999999999999997 5999999999999999999999999999999
Q ss_pred CCeEEEEEcCC-CHHHHHHHHhhh
Q 005108 690 NGSRMKEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 690 ~G~~~~~~~g~-~~~~l~~~~~~~ 712 (714)
+|+.+.++.|. +.+.|+++|+++
T Consensus 88 ~G~~~~~~~g~~~~~~l~~~l~~~ 111 (115)
T 1thx_A 88 GEQILDSTEGVISKDKLLSFLDTH 111 (115)
T ss_dssp TTEEEEEEESCCCHHHHHHHHHHH
T ss_pred CCEEEEEecCCCCHHHHHHHHHHH
Confidence 99999999999 999999999875
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=99.51 E-value=2.2e-13 Score=139.28 Aligned_cols=173 Identities=14% Similarity=0.073 Sum_probs=136.1
Q ss_pred HHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHH
Q 005108 392 RVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVA 471 (714)
Q Consensus 392 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 471 (714)
.+..+...|++++|+..++++++..+.... .......+..+|.++...+++++|+.+|++++.+.+.....+
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~ 152 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPE--------FQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVY 152 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHH--------HHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTT
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChH--------HHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHH
Confidence 577888999999999999999987766511 000123445689999999999999999999998654433221
Q ss_pred HHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhcc-------CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Q 005108 472 VLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRF-------DPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQ 544 (714)
Q Consensus 472 ~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~-------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 544 (714)
. .+..+..+|.+|...|++++|+.+|+++++. .+....+++++|.+|.++|++++|++++++++++.
T Consensus 153 ~------~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~ 226 (293)
T 3u3w_A 153 Q------NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEIS 226 (293)
T ss_dssp H------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred H------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 1 1112234599999999999999999999952 22235689999999999999999999999999875
Q ss_pred CCC------HHHHHHHHHHHHHhc-cHHHHHHHHHHHHHhC
Q 005108 545 PNY------TKALLRRAASNSKLE-KWADAVRDFEVLRREL 578 (714)
Q Consensus 545 p~~------~~~~~~la~~~~~~g-~~~eA~~~~~~al~~~ 578 (714)
+.. ..+++.+|.+|.++| ++++|+++|++++++.
T Consensus 227 ~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 227 CRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 433 789999999999999 5799999999998753
|
| >1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C | Back alignment and structure |
|---|
Probab=99.51 E-value=4.3e-14 Score=120.14 Aligned_cols=94 Identities=30% Similarity=0.534 Sum_probs=84.9
Q ss_pred hHHhhhc-cCCCceEEEeecCCCccccccchHHHHHHhhCCC-cEEEEEecccCcchhhhCCccccceEEEEeCCeEEEE
Q 005108 619 EQFRAAV-SLPGVSVVHFKSASNLHCKQISPYVETLCGRYPS-INFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKE 696 (714)
Q Consensus 619 e~~~~~i-~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~-~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~~ 696 (714)
+.|...+ ...+++++.||++||++|+.+.|.++++..++++ +.|+.+|+++.+++++.|+|.++||++++++|+.+.+
T Consensus 8 ~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~ 87 (105)
T 1fb6_A 8 SSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPGIATQYNIRSIPTVLFFKNGERKES 87 (105)
T ss_dssp TTHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCSSSEEEEEETTEEEEE
T ss_pred hhHHHHHhcCCCcEEEEEECCCChHHHHHHHHHHHHHHHhcCceEEEEEcCcchHHHHHhCCCCcccEEEEEeCCeEEEE
Confidence 4455533 4567899999999999999999999999999975 9999999999999999999999999999999999999
Q ss_pred EcCC-CHHHHHHHHhhh
Q 005108 697 IVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 697 ~~g~-~~~~l~~~~~~~ 712 (714)
+.|. +.+.|+++|+++
T Consensus 88 ~~G~~~~~~l~~~l~~~ 104 (105)
T 1fb6_A 88 IIGAVPKSTLTDSIEKY 104 (105)
T ss_dssp EEECCCHHHHHHHHHHH
T ss_pred EecCCCHHHHHHHHHhh
Confidence 9999 999999999875
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.51 E-value=2.4e-13 Score=120.18 Aligned_cols=118 Identities=14% Similarity=0.111 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCC
Q 005108 434 AYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSN 513 (714)
Q Consensus 434 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~ 513 (714)
...++.+|.++...|++++|+..|+++++.+|++..++..+ |.++...|++++|+.+|+++++.+|.+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l------------a~~~~~~~~~~~A~~~~~~a~~~~~~~ 83 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNR------------AACYTKLLEFQLALKDCEECIQLEPTF 83 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHH------------HHHHTTTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHH------------HHHHHHhccHHHHHHHHHHHHHhCCCc
Confidence 56777778888888888888888888887777777766655 777777888888888888888777777
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcc
Q 005108 514 SVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEK 563 (714)
Q Consensus 514 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 563 (714)
..+++.+|.++..+|++++|+.+|+++++++|++..++..++.++..+|+
T Consensus 84 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 84 IKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 77788888888888888888888888887777777777777777776653
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.6e-13 Score=127.15 Aligned_cols=115 Identities=15% Similarity=0.144 Sum_probs=107.7
Q ss_pred hHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCC
Q 005108 433 EAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPS 512 (714)
Q Consensus 433 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~ 512 (714)
.+..++.+|.+++..|++++|+.+|+++++++|++..++..+ |.+|...|++++|+.+|+++++++|+
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l------------~~~~~~~g~~~~A~~~~~~al~~~p~ 77 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNR------------AAAYSASGQHEKAAEDAELATVVDPK 77 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHH------------HHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 477899999999999999999999999999999999988876 99999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005108 513 NSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNS 559 (714)
Q Consensus 513 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 559 (714)
+..+|+++|.+|..+|++++|+.+|+++++++|++..+++.++....
T Consensus 78 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 124 (164)
T 3sz7_A 78 YSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETT 124 (164)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999887776665543
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=99.51 E-value=1.5e-14 Score=157.82 Aligned_cols=163 Identities=17% Similarity=0.140 Sum_probs=131.1
Q ss_pred HcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHH----HHHH
Q 005108 398 KLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVE----VAVL 473 (714)
Q Consensus 398 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~ 473 (714)
.++++++|+..|+.+++..|.. +..++.+|..++..|+|++|+..|+++++++|.+.. ....
T Consensus 246 ~l~~~~~A~~~~~~~~~~~~~~--------------a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~ 311 (457)
T 1kt0_A 246 TLKSFEKAKESWEMDTKEKLEQ--------------AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKA 311 (457)
T ss_dssp EEEEEECCCCGGGSCHHHHHHH--------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHH
T ss_pred hhhhcccCcchhhcCHHHHHHH--------------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHH
Confidence 4566777777777777766665 788999999999999999999999999999998830 0000
Q ss_pred HHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 005108 474 LNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLR 553 (714)
Q Consensus 474 l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 553 (714)
..-.....+.++|.+|.++|+|++|+.+|+++++++|++..+|+++|.+|..+|++++|+.+|+++++++|++..++..
T Consensus 312 -~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~ 390 (457)
T 1kt0_A 312 -SESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQ 390 (457)
T ss_dssp -HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 0001122233559999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccHHHHHH-HHHHHH
Q 005108 554 RAASNSKLEKWADAVR-DFEVLR 575 (714)
Q Consensus 554 la~~~~~~g~~~eA~~-~~~~al 575 (714)
++.++.+++++++|.. .|++++
T Consensus 391 l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 391 ISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998875 344433
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.50 E-value=3.9e-13 Score=118.17 Aligned_cols=119 Identities=20% Similarity=0.171 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCC
Q 005108 434 AYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSN 513 (714)
Q Consensus 434 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~ 513 (714)
...++.+|..+...|++++|+..|++++..+|++..++..+ |.++...|++++|+.+|+++++.+|++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~------------a~~~~~~~~~~~A~~~~~~~~~~~~~~ 79 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNR------------AAAYSKLGNYAGAVQDCERAICIDPAY 79 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHH------------HHHHHHhhchHHHHHHHHHHHhcCccC
Confidence 45566666667677777777777777766666666655544 666666667777777776666666666
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccH
Q 005108 514 SVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKW 564 (714)
Q Consensus 514 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 564 (714)
..+++.+|.++...|++++|+.+|+++++++|++..++..++.++..+|++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 80 SKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 666666666666666777777666666666666666666666666666553
|
| >2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A | Back alignment and structure |
|---|
Probab=99.50 E-value=3.1e-14 Score=121.86 Aligned_cols=94 Identities=21% Similarity=0.413 Sum_probs=86.4
Q ss_pred hHHhhhccCCCceEEEeecCCCccccccchHHHHHHhhCC-CcEEEEEecccCcchhhhCCccccceEEEEeCCeEEEEE
Q 005108 619 EQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYP-SINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKEI 697 (714)
Q Consensus 619 e~~~~~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~-~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~~~ 697 (714)
+.|..++...+++++.||++||++|+.+.|.++++..+++ ++.|+.||+++.+++++.|+|.++||+++|++|+.+.++
T Consensus 9 ~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~ 88 (109)
T 2yzu_A 9 QNFDETLGQHPLVLVDFWAEWCAPCRMIAPILEEIAKEYEGKLLVAKLDVDENPKTAMRYRVMSIPTVILFKDGQPVEVL 88 (109)
T ss_dssp TTHHHHHHHCSEEEEEEECTTCHHHHHHHHHHHHHHHHTBTTBEEEEEETTTCHHHHHHTTCCSSSEEEEEETTEEEEEE
T ss_pred hHHHHHhcCCCeEEEEEECCCCHHHHHhhHHHHHHHHHhhCceEEEEEECCCCHhHHHhCCCCcCCEEEEEeCCcEeeeE
Confidence 4555666667899999999999999999999999999997 599999999999999999999999999999999999999
Q ss_pred cCC-CHHHHHHHHhhh
Q 005108 698 VCP-SRDMLEHSVRHY 712 (714)
Q Consensus 698 ~g~-~~~~l~~~~~~~ 712 (714)
.|. +.+.|.++|+++
T Consensus 89 ~g~~~~~~l~~~l~~~ 104 (109)
T 2yzu_A 89 VGAQPKRNYQAKIEKH 104 (109)
T ss_dssp ESCCCHHHHHHHHHTT
T ss_pred eCCCCHHHHHHHHHHH
Confidence 999 899999999875
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.50 E-value=5.5e-14 Score=131.92 Aligned_cols=130 Identities=12% Similarity=0.140 Sum_probs=117.2
Q ss_pred HHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHH
Q 005108 396 LLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLN 475 (714)
Q Consensus 396 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 475 (714)
+...|++++|+..++++++.+|.+ ..+|+.+|.++...|++++|+.+|+++++++|++..++..+
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p~~--------------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l- 84 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANPQN--------------SEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAAL- 84 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCCSC--------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHH-
T ss_pred hhhccCHHHHHHHHHHHHHhCCCc--------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH-
Confidence 456789999999999999999998 88999999999999999999999999999999999888766
Q ss_pred hHHHHHHHHHHHhH-HhhCcCH--HHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHH
Q 005108 476 NVKLVARARARGND-LFKSERF--TEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKAL 551 (714)
Q Consensus 476 ~l~~~~~~~~~g~~-~~~~g~~--~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 551 (714)
|.+ +...|++ ++|+.+|+++++.+|++..+++.+|.+|...|++++|+..|+++++++|++....
T Consensus 85 -----------a~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 85 -----------ATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp -----------HHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred -----------HHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence 888 8899999 9999999999999999999999999999999999999999999999999976443
|
| >2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A | Back alignment and structure |
|---|
Probab=99.49 E-value=5.2e-14 Score=123.15 Aligned_cols=99 Identities=23% Similarity=0.383 Sum_probs=87.2
Q ss_pred eeehhhhHHh-hhccCCCceEEEeecCCCccccccchHHHHHHhhCC-CcEEEEEecccCcchhhhCCccccceEEEEeC
Q 005108 613 EEVSSLEQFR-AAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYP-SINFLKVDIDESPGVAHAENVRIVPTFKIYKN 690 (714)
Q Consensus 613 ~~i~~~e~~~-~~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~-~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~ 690 (714)
..+.. +.|. .++...+++++.||++||++|+.+.|.++++..+++ ++.|+.||+++.+++++.|+|.++||+++|++
T Consensus 15 ~~l~~-~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~ 93 (121)
T 2i1u_A 15 IKVTD-ASFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDVDTNPETARNFQVVSIPTLILFKD 93 (121)
T ss_dssp EECCT-TTHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCSSSEEEEEET
T ss_pred eecCH-HHHHHHHHhCCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCCHHHHHhcCCCcCCEEEEEEC
Confidence 33444 4444 455667799999999999999999999999999996 59999999999999999999999999999999
Q ss_pred CeEEEEEcCC-CHHHHHHHHhhh
Q 005108 691 GSRMKEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 691 G~~~~~~~g~-~~~~l~~~~~~~ 712 (714)
|+.+.++.|. +.+.|.++|+++
T Consensus 94 g~~~~~~~G~~~~~~l~~~l~~~ 116 (121)
T 2i1u_A 94 GQPVKRIVGAKGKAALLRELSDV 116 (121)
T ss_dssp TEEEEEEESCCCHHHHHHHTCSC
T ss_pred CEEEEEecCCCCHHHHHHHHHHH
Confidence 9999999999 899999998864
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.49 E-value=3.1e-13 Score=119.51 Aligned_cols=111 Identities=23% Similarity=0.466 Sum_probs=106.0
Q ss_pred HHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccH
Q 005108 485 ARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKW 564 (714)
Q Consensus 485 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 564 (714)
.+|.++...|++++|+.+|+++++.+|.+..+++.+|.++...|++++|+.+|+++++++|++..+++.+|.++..+|++
T Consensus 21 ~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~ 100 (133)
T 2lni_A 21 NKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDY 100 (133)
T ss_dssp HHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhhH
Confidence 34999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 005108 565 ADAVRDFEVLRRELPDDNEIAESLFHAQVSL 595 (714)
Q Consensus 565 ~eA~~~~~~al~~~p~~~~~~~~L~~~~~~l 595 (714)
++|+.+|+++++++|++..++..+..++...
T Consensus 101 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 131 (133)
T 2lni_A 101 TKAMDVYQKALDLDSSCKEAADGYQRCMMAQ 131 (133)
T ss_dssp HHHHHHHHHHHHHCGGGTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHHh
Confidence 9999999999999999999998888877654
|
| >1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.49 E-value=7.5e-14 Score=124.41 Aligned_cols=94 Identities=20% Similarity=0.272 Sum_probs=85.0
Q ss_pred hHHhhhc-cCCCceEEEeecCCCccccccchHHHHHHhhCC-----CcEEEEEecccCcchhhhCCccccceEEEEeCCe
Q 005108 619 EQFRAAV-SLPGVSVVHFKSASNLHCKQISPYVETLCGRYP-----SINFLKVDIDESPGVAHAENVRIVPTFKIYKNGS 692 (714)
Q Consensus 619 e~~~~~i-~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~-----~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~ 692 (714)
+.|...+ ...++++|+||++||++|+.+.|.++++..++. ++.|+.||+++.+++++.|+|.++||+++|++|+
T Consensus 15 ~~~~~~~~~~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~g~ 94 (133)
T 1x5d_A 15 DSFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDATVNQVLASRYGIRGFPTIKIFQKGE 94 (133)
T ss_dssp THHHHHTTTSSSEEEEEEECTTCHHHHTHHHHHHHHHHHHHHHTTTSEEEEEEETTTCCHHHHHHTCCSSSEEEEEETTE
T ss_pred hhHHHHHhcCCCeEEEEEECCCCHHHHhhcHHHHHHHHHHHhhcCCcEEEEEEECCCCHHHHHhCCCCeeCeEEEEeCCC
Confidence 5566544 557799999999999999999999999998874 5999999999999999999999999999999999
Q ss_pred EEEEEcCC-CHHHHHHHHhhh
Q 005108 693 RMKEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 693 ~~~~~~g~-~~~~l~~~~~~~ 712 (714)
.+.++.|. +.+.|.++|+++
T Consensus 95 ~~~~~~G~~~~~~l~~~l~~~ 115 (133)
T 1x5d_A 95 SPVDYDGGRTRSDIVSRALDL 115 (133)
T ss_dssp EEEEECSCCSHHHHHHHHHHH
T ss_pred ceEEecCCCCHHHHHHHHHHH
Confidence 99999999 999999999874
|
| >3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=99.49 E-value=4e-14 Score=125.05 Aligned_cols=97 Identities=15% Similarity=0.110 Sum_probs=84.0
Q ss_pred hhhHHhhhc-cCCCceEEEeecCCCccccccchHHHHHHhhC------CCcEEEEEecccCcchhhhCCccccceEEEEe
Q 005108 617 SLEQFRAAV-SLPGVSVVHFKSASNLHCKQISPYVETLCGRY------PSINFLKVDIDESPGVAHAENVRIVPTFKIYK 689 (714)
Q Consensus 617 ~~e~~~~~i-~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~------~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~ 689 (714)
+.+.|...+ ...++++|+||++||++|+.+.|.++++...+ +++.|+.||+++.+++++.|+|.++||+++|+
T Consensus 21 ~~~~f~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~ 100 (127)
T 3h79_A 21 TDETFDSIVMDPEKDVFVLYYVPWSRHSVAAMRLWDDLSMSQSQKRNHLTFVAARIDGEKYPDVIERMRVSGFPTMRYYT 100 (127)
T ss_dssp CTTTHHHHHTCTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHHTSTTTTTEEEEEEETTTCHHHHHHTTCCSSSEEEEEC
T ss_pred ChhhHHHHHhCCCCCEEEEEECCccHHHHHHhHHHHHHHHHHHhcccCCCeEEEEEEccccHhHHHhcCCccCCEEEEEe
Confidence 345666666 45789999999999999999999999997654 35999999999999999999999999999999
Q ss_pred CCeEE--EEEcCC-CHHHHHHHHhhhc
Q 005108 690 NGSRM--KEIVCP-SRDMLEHSVRHYS 713 (714)
Q Consensus 690 ~G~~~--~~~~g~-~~~~l~~~~~~~~ 713 (714)
+|+.+ .++.|. +.+.|.++|++++
T Consensus 101 ~g~~~~~~~~~G~~~~~~l~~~i~~~s 127 (127)
T 3h79_A 101 RIDKQEPFEYSGQRYLSLVDSFVFQNT 127 (127)
T ss_dssp SSCSSSCEECCSCCCHHHHHHHHHHHC
T ss_pred CCCCCCceEecCCccHHHHHHHHHhcC
Confidence 98775 477788 9999999998864
|
| >2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.48 E-value=3.7e-14 Score=127.68 Aligned_cols=99 Identities=23% Similarity=0.278 Sum_probs=87.7
Q ss_pred eeeehhhhHHhhhccCCCceEEEeecCCCccccccchHHHHHHhhCC----CcEEEEEecccCcchhhhCCccccceEEE
Q 005108 612 VEEVSSLEQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYP----SINFLKVDIDESPGVAHAENVRIVPTFKI 687 (714)
Q Consensus 612 ~~~i~~~e~~~~~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~----~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~ 687 (714)
+..+ +.+.|...+...++++|+||++||++|+.+.|.++++..++. ++.|+.||+++..++++.|+|.++||+++
T Consensus 19 v~~l-~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~ 97 (140)
T 2dj1_A 19 VWVL-NDGNFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDATSASMLASKFDVSGYPTIKI 97 (140)
T ss_dssp EEEC-CTTTHHHHHTTCSEEEEEECCTTCHHHHTTHHHHHHHHHHHHSSSSCCEEEEECTTTCHHHHHHTTCCSSSEEEE
T ss_pred CEEc-ChHhHHHHHhcCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhccCCceEEEEEeCcccHHHHHHCCCCccCeEEE
Confidence 3344 456777777778899999999999999999999999988874 38999999999999999999999999999
Q ss_pred EeCCeEEEEEcCC-CHHHHHHHHhhh
Q 005108 688 YKNGSRMKEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 688 ~~~G~~~~~~~g~-~~~~l~~~~~~~ 712 (714)
|++|+ +.++.|. +.+.|.++|+++
T Consensus 98 ~~~G~-~~~~~g~~~~~~l~~~l~~~ 122 (140)
T 2dj1_A 98 LKKGQ-AVDYDGSRTQEEIVAKVREV 122 (140)
T ss_dssp EETTE-EEECCSCCCHHHHHHHHHHH
T ss_pred EECCc-EEEcCCCCCHHHHHHHHHHh
Confidence 99999 7788888 999999999875
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.48 E-value=1e-12 Score=113.19 Aligned_cols=111 Identities=27% Similarity=0.520 Sum_probs=105.2
Q ss_pred HHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 005108 482 RARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKL 561 (714)
Q Consensus 482 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 561 (714)
.+..+|..+...|++++|+..|+++++.+|.+..++..+|.++...|++++|+..++++++.+|++..+++.+|.++..+
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 85 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFL 85 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 34456999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005108 562 EKWADAVRDFEVLRRELPDDNEIAESLFHAQ 592 (714)
Q Consensus 562 g~~~eA~~~~~~al~~~p~~~~~~~~L~~~~ 592 (714)
|++++|+.+|+++++++|++..+...+..+.
T Consensus 86 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 86 NRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp TCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 9999999999999999999999988887664
|
| >1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.48 E-value=7e-14 Score=125.84 Aligned_cols=94 Identities=30% Similarity=0.519 Sum_probs=80.5
Q ss_pred hHHhhhccCCCceEEEeecCCCccccccchHHHHHHhhCC-CcEEEEEecccCcchhhhCCccccceEEEEeCCeEEEEE
Q 005108 619 EQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYP-SINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKEI 697 (714)
Q Consensus 619 e~~~~~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~-~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~~~ 697 (714)
+.|...+...+.++|+||++||++|+.+.|.++++..+++ ++.|+.||+++.+++++.|+|.++||+++|++|+.+.++
T Consensus 41 ~~~~~~~~~~~~vvv~f~~~~C~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~G~~~~~~ 120 (140)
T 1v98_A 41 KGFAQEVAGAPLTLVDFFAPWCGPCRLVSPILEELARDHAGRLKVVKVNVDEHPGLAARYGVRSVPTLVLFRRGAPVATW 120 (140)
T ss_dssp --------CCCEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCHHHHHHTTCCSSSEEEEEETTEEEEEE
T ss_pred HHHHHHHHcCCCEEEEEECCCCHHHHHHHHHHHHHHHHccCceEEEEEECCCCHHHHHHCCCCccCEEEEEeCCcEEEEE
Confidence 4566555444449999999999999999999999999997 599999999999999999999999999999999999999
Q ss_pred cCC-CHHHHHHHHhhh
Q 005108 698 VCP-SRDMLEHSVRHY 712 (714)
Q Consensus 698 ~g~-~~~~l~~~~~~~ 712 (714)
.|. +.+.|.++|+++
T Consensus 121 ~G~~~~~~l~~~i~~~ 136 (140)
T 1v98_A 121 VGASPRRVLEERLRPY 136 (140)
T ss_dssp ESCCCHHHHHHHHHHH
T ss_pred eCCCCHHHHHHHHHHH
Confidence 999 899999999875
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.48 E-value=1.5e-12 Score=114.43 Aligned_cols=113 Identities=34% Similarity=0.578 Sum_probs=108.1
Q ss_pred HHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccH
Q 005108 485 ARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKW 564 (714)
Q Consensus 485 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 564 (714)
.+|..+...|++++|+..|+++++.+|++..++..+|.++...|++++|+.+++++++.+|++..+++.+|.++..+|++
T Consensus 17 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (131)
T 2vyi_A 17 TEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKH 96 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHHhCCH
Confidence 45999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhh
Q 005108 565 ADAVRDFEVLRRELPDDNEIAESLFHAQVSLKK 597 (714)
Q Consensus 565 ~eA~~~~~~al~~~p~~~~~~~~L~~~~~~l~~ 597 (714)
++|+.+|+++++++|++..+...+..++..+++
T Consensus 97 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 97 VEAVAYYKKALELDPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence 999999999999999999999999888877654
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.48 E-value=1e-12 Score=118.55 Aligned_cols=119 Identities=29% Similarity=0.397 Sum_probs=109.7
Q ss_pred ccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCC---HHHHHHHHHHHHHhCCHHHHHHHHH
Q 005108 462 QIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSN---SVLYCNRAACWFKLGQWERSVEDSN 538 (714)
Q Consensus 462 ~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~ 538 (714)
...+.+...+..+ |..++..|++++|+.+|+++++.+|++ ..+++++|.+|..+|++++|+.+|+
T Consensus 22 ~~~~~~~~~~~~~------------a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 89 (148)
T 2dba_A 22 TPGASSVEQLRKE------------GNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEAS 89 (148)
T ss_dssp CTTCCCHHHHHHH------------HHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccchHHHHHHHHH------------HHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHH
Confidence 3456667666655 999999999999999999999999987 8999999999999999999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005108 539 QALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAESLFHAQ 592 (714)
Q Consensus 539 ~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~L~~~~ 592 (714)
++++++|++..+++.+|.++..+|++++|+.+|+++++++|++..+...+..+.
T Consensus 90 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 90 KAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHhhCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999888776653
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.9e-12 Score=132.24 Aligned_cols=176 Identities=15% Similarity=0.117 Sum_probs=140.9
Q ss_pred HHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCH-----HHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhh
Q 005108 352 EKHLSKCTDARKVGDWKSALREGDAAIAAGADFSP-----QLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTR 426 (714)
Q Consensus 352 ~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 426 (714)
..+...+..+...|++++|++.++++++..+.... .++..++.++...|++++|+.+|+++++..+....
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~----- 150 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGID----- 150 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSC-----
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCc-----
Confidence 44556677788999999999999999998775321 33556888999999999999999999987655411
Q ss_pred hhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHh---ccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHH
Q 005108 427 FFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAG---QIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAY 503 (714)
Q Consensus 427 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al---~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~ 503 (714)
......++..+|.+|...|++++|+.+|++++ +..+++..... ..+.++|.+|...|+|++|+.+|
T Consensus 151 ---~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~--------~~~~nlg~~y~~~~~y~~Al~~~ 219 (293)
T 2qfc_A 151 ---VYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDV--------KVRYNHAKALYLDSRYEESLYQV 219 (293)
T ss_dssp ---TTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH--------HHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ---hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchH--------HHHHhHHHHHHHHhhHHHHHHHH
Confidence 11236689999999999999999999999999 55565543220 11234599999999999999999
Q ss_pred HHhhccCCC------CHHHHHHHHHHHHHhCCHHHH-HHHHHHHHHh
Q 005108 504 GEGLRFDPS------NSVLYCNRAACWFKLGQWERS-VEDSNQALLI 543 (714)
Q Consensus 504 ~~al~~~p~------~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~ 543 (714)
++++++.+. ...+++++|.+|..+|++++| ..+|++++.+
T Consensus 220 ~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 220 NKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 999987532 278999999999999999999 7889999864
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=99.47 E-value=1.1e-13 Score=124.47 Aligned_cols=118 Identities=15% Similarity=0.184 Sum_probs=101.4
Q ss_pred hhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCC-------CHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHH
Q 005108 431 LSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPR-------NVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAY 503 (714)
Q Consensus 431 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-------~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~ 503 (714)
+..++.+..+|..++..|+|++|+..|+++++++|+ +.... ....+.++|.++.++|+|++|+..|
T Consensus 8 ~~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~-------~a~a~~n~g~al~~Lgr~~eAl~~~ 80 (159)
T 2hr2_A 8 VVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGF-------DAFCHAGLAEALAGLRSFDEALHSA 80 (159)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHH-------HHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccc-------hHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 456888999999999999999999999999999999 43310 0112335699999999999999999
Q ss_pred HHhhcc-------CCCCHHHH----HHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 005108 504 GEGLRF-------DPSNSVLY----CNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRA 555 (714)
Q Consensus 504 ~~al~~-------~p~~~~~~----~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 555 (714)
+++|++ +|++..+| +++|.++..+|++++|+..|+++++++|++..+.-.+.
T Consensus 81 ~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~ 143 (159)
T 2hr2_A 81 DKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKE 143 (159)
T ss_dssp HHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHH
T ss_pred HHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 999999 99999999 99999999999999999999999999998865444333
|
| >3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=4.5e-14 Score=119.72 Aligned_cols=85 Identities=13% Similarity=0.237 Sum_probs=70.6
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhC---CCcEEEEEecccC--cchhhhCCccccceEEEEeCCeEEEEEcCC-C
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRY---PSINFLKVDIDES--PGVAHAENVRIVPTFKIYKNGSRMKEIVCP-S 701 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~---~~~~~~~vd~d~~--~~l~~~~~v~~~Pt~~~~~~G~~~~~~~g~-~ 701 (714)
.+.++|+||++||++|+++.+.+....... ..+.+++||++++ +.++..|+|+++|||++|++|+++.|++|+ +
T Consensus 18 ~~~~LV~F~A~wC~~Ck~~~~~i~~~~~~~a~~~~~~l~~vdv~~~~~~~la~~~~V~g~PT~i~f~~G~ev~Ri~G~~~ 97 (116)
T 3dml_A 18 AELRLLMFEQPGCLYCARWDAEIAPQYPLTDEGRAAPVQRLQMRDPLPPGLELARPVTFTPTFVLMAGDVESGRLEGYPG 97 (116)
T ss_dssp -CEEEEEEECTTCHHHHHHHHHTTTTGGGSHHHHHSCEEEEETTSCCCTTCBCSSCCCSSSEEEEEETTEEEEEEECCCC
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHhhHHHhhhcccceEEEEECCCCCchhHHHHCCCCCCCEEEEEECCEEEeeecCCCC
Confidence 357899999999999999987554332221 1267899999986 479999999999999999999999999999 9
Q ss_pred HHHHHHHHhhh
Q 005108 702 RDMLEHSVRHY 712 (714)
Q Consensus 702 ~~~l~~~~~~~ 712 (714)
.+++..+|+++
T Consensus 98 ~~~f~~~L~~~ 108 (116)
T 3dml_A 98 EDFFWPMLARL 108 (116)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998764
|
| >1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa} | Back alignment and structure |
|---|
Probab=99.47 E-value=9.4e-15 Score=129.75 Aligned_cols=102 Identities=27% Similarity=0.460 Sum_probs=90.9
Q ss_pred ceeeehhhhHHhhhccC----CCceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCcchhhhCCccccceEE
Q 005108 611 EVEEVSSLEQFRAAVSL----PGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAHAENVRIVPTFK 686 (714)
Q Consensus 611 ~~~~i~~~e~~~~~i~~----~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~ 686 (714)
.+..+.+.++|...+.. .+++++.||++||++|+.+.|.++++..+++++.|+.||+++.+++++.|+|.++||++
T Consensus 15 ~~~~i~~~~~~~~~l~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~v~~~~~~~~~~~~~v~~~Pt~~ 94 (130)
T 1wmj_A 15 VVIACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAVFLKVDVDELKEVAEKYNVEAMPTFL 94 (130)
T ss_dssp SSBCCSSSHHHHHHHHHHHTTTCBCBEECCSSSCSCSSSSHHHHHHHHHHCTTBCCEECCTTTSGGGHHHHTCCSSCCCC
T ss_pred ceEEcCCHHHHHHHHHHHhhcCCEEEEEEECCCChhHHHHHHHHHHHHHHCCCCEEEEEeccchHHHHHHcCCCccceEE
Confidence 45556666777766643 67899999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCeEEEEEcCCCHHHHHHHHhhh
Q 005108 687 IYKNGSRMKEIVCPSRDMLEHSVRHY 712 (714)
Q Consensus 687 ~~~~G~~~~~~~g~~~~~l~~~~~~~ 712 (714)
+|++|+.+.++.|.+.++|+++|+++
T Consensus 95 ~~~~g~~~~~~~g~~~~~l~~~l~~~ 120 (130)
T 1wmj_A 95 FIKDGAEADKVVGARKDDLQNTIVKH 120 (130)
T ss_dssp BCTTTTCCBCCCTTCTTTHHHHHHHH
T ss_pred EEeCCeEEEEEeCCCHHHHHHHHHHH
Confidence 99999999999999888899998875
|
| >3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A | Back alignment and structure |
|---|
Probab=99.47 E-value=1.2e-13 Score=124.37 Aligned_cols=84 Identities=23% Similarity=0.375 Sum_probs=78.1
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhCC-CcEEEEEecccCcchhhhCCccccceEEEE-eCCeEEEEEcCC-CHHH
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRYP-SINFLKVDIDESPGVAHAENVRIVPTFKIY-KNGSRMKEIVCP-SRDM 704 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~-~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~-~~G~~~~~~~g~-~~~~ 704 (714)
.++++|+||++||++|+.+.|.++++..+++ .+.|+.||+++.+++++.|+|.++||+++| ++|+.+ ++.|. +.+.
T Consensus 51 ~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~~g~~~-~~~G~~~~~~ 129 (141)
T 3hxs_A 51 DKPAIVDFYADWCGPCKMVAPILEELSKEYAGKIYIYKVNVDKEPELARDFGIQSIPTIWFVPMKGEPQ-VNMGALSKEQ 129 (141)
T ss_dssp SSCEEEEEECTTCTTHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCSSSEEEEECSSSCCE-EEESCCCHHH
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCceEEEEEECCCCHHHHHHcCCCCcCEEEEEeCCCCEE-EEeCCCCHHH
Confidence 5789999999999999999999999999997 599999999999999999999999999999 777766 88888 9999
Q ss_pred HHHHHhhh
Q 005108 705 LEHSVRHY 712 (714)
Q Consensus 705 l~~~~~~~ 712 (714)
|+++|+++
T Consensus 130 l~~~l~~~ 137 (141)
T 3hxs_A 130 LKGYIDKV 137 (141)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 99999875
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=99.46 E-value=8.9e-13 Score=121.60 Aligned_cols=131 Identities=15% Similarity=0.188 Sum_probs=114.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCC
Q 005108 387 QLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPR 466 (714)
Q Consensus 387 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 466 (714)
..+..+|.++...|++++|+..|+++++.+|.+ ..++..+|.++...|++++|+.+|+++++.+|+
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~--------------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~ 79 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELNPSN--------------AIYYGNRSLAYLRTECYGYALGDATRAIELDKK 79 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC--------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC--------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 345668888999999999999999999988887 778999999999999999999999999999999
Q ss_pred CHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHH--HHHhCCHHHHHHHHHHHHHh
Q 005108 467 NVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAAC--WFKLGQWERSVEDSNQALLI 543 (714)
Q Consensus 467 ~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~--~~~~g~~~~A~~~~~~al~~ 543 (714)
+..++..+ |.++...|++++|+.+|+++++++|.+..++..++.+ +...|++++|++.++++..+
T Consensus 80 ~~~~~~~~------------a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 80 YIKGYYRR------------AASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp CHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHH------------HHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 98888766 8999999999999999999999999998888555444 88889999999999887654
|
| >3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.5e-13 Score=134.04 Aligned_cols=96 Identities=25% Similarity=0.447 Sum_probs=88.2
Q ss_pred hhhHHhh-hccCCCceEEEeecCCCccccccchHHHHHHhhCCC-cEEEEEecccCcchhhhCCccccceEEEEeCCeEE
Q 005108 617 SLEQFRA-AVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYPS-INFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRM 694 (714)
Q Consensus 617 ~~e~~~~-~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~-~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~ 694 (714)
+.++|.. ++...++++|+||++||++|+.+.|.++++..++++ +.|+.||+++.+++++.|+|.++||+++|++|+.+
T Consensus 18 t~~~f~~~v~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~ 97 (222)
T 3dxb_A 18 TDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVA 97 (222)
T ss_dssp CTTTHHHHHTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCTTTGGGGTCCSBSEEEEEETTEEE
T ss_pred CHHHHHHHHHhcCCEEEEEEECCcCHHHHHHHHHHHHHHHHhcCCcEEEEEECCCCHHHHHHcCCCcCCEEEEEECCeEE
Confidence 3456665 566778999999999999999999999999999986 99999999999999999999999999999999999
Q ss_pred EEEcCC-CHHHHHHHHhhh
Q 005108 695 KEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 695 ~~~~g~-~~~~l~~~~~~~ 712 (714)
.++.|. +.+.|+++|+++
T Consensus 98 ~~~~G~~~~~~l~~~l~~~ 116 (222)
T 3dxb_A 98 ATKVGALSKGQLKEFLDAN 116 (222)
T ss_dssp EEEESCCCHHHHHHHHHHH
T ss_pred EEeccccChHHHHHHHHhh
Confidence 999999 999999999875
|
| >2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens} | Back alignment and structure |
|---|
Probab=99.46 E-value=7.4e-14 Score=123.15 Aligned_cols=90 Identities=12% Similarity=0.153 Sum_probs=82.7
Q ss_pred hccCCCceEEEeecCCCccccccchHHHHHHhhC-CCcEEEEEe--cccCcchhhhCCccccceEEEEe-CCeEEEEEcC
Q 005108 624 AVSLPGVSVVHFKSASNLHCKQISPYVETLCGRY-PSINFLKVD--IDESPGVAHAENVRIVPTFKIYK-NGSRMKEIVC 699 (714)
Q Consensus 624 ~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~-~~~~~~~vd--~d~~~~l~~~~~v~~~Pt~~~~~-~G~~~~~~~g 699 (714)
.....+++++.||++||++|+.+.|.++++..++ +++.|+.|| +++..++++.|+|.++||+++|+ +|+.+.++.|
T Consensus 22 ~~~~~k~~lv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~v~~~~d~~~~~~~~~~v~~~Pt~~~~~~~G~~~~~~~G 101 (126)
T 2l57_A 22 EAKEGIPTIIMFKTDTCPYCVEMQKELSYVSKEREGKFNIYYARLEEEKNIDLAYKYDANIVPTTVFLDKEGNKFYVHQG 101 (126)
T ss_dssp TCCSSSCEEEEEECSSCHHHHHHHHHHHHHHHHSSSSCEEEEEETTSSHHHHHHHHTTCCSSSEEEEECTTCCEEEEEES
T ss_pred HHhCCCcEEEEEECCCCccHHHHHHHHHHHHHHhcCCeEEEEEeCCCCchHHHHHHcCCcceeEEEEECCCCCEEEEecC
Confidence 3445678999999999999999999999999999 579999999 99999999999999999999997 9999999999
Q ss_pred C-CHHHHHHHHhhhc
Q 005108 700 P-SRDMLEHSVRHYS 713 (714)
Q Consensus 700 ~-~~~~l~~~~~~~~ 713 (714)
. +.++|+++|+++.
T Consensus 102 ~~~~~~l~~~l~~~~ 116 (126)
T 2l57_A 102 LMRKNNIETILNSLG 116 (126)
T ss_dssp CCCHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHh
Confidence 8 9999999998753
|
| >2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.4e-13 Score=122.05 Aligned_cols=100 Identities=16% Similarity=0.259 Sum_probs=86.0
Q ss_pred eeeehhhhHHhh-hccCCCceEEEeecCCCccccccchHHHHHHhhCCC-cEEEEEecccCcchhhhCCccccceEEEEe
Q 005108 612 VEEVSSLEQFRA-AVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYPS-INFLKVDIDESPGVAHAENVRIVPTFKIYK 689 (714)
Q Consensus 612 ~~~i~~~e~~~~-~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~-~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~ 689 (714)
+..+.. ++|.. ++...++++|+||++||++|+.+.|.++++..++++ +.|+.||+++..++++.|+|.++||+++|+
T Consensus 19 v~~l~~-~~f~~~~~~~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~ 97 (130)
T 2dml_A 19 VIELTP-SNFNREVIQSDGLWLVEFYAPWCGHCQRLTPEWKKAATALKDVVKVGAVNADKHQSLGGQYGVQGFPTIKIFG 97 (130)
T ss_dssp SEECCT-TTHHHHTTTCSSCEEEEEECTTCSTTGGGHHHHHHHHHHTTTTSEEEEEETTTCHHHHHHHTCCSSSEEEEES
T ss_pred cEECCH-HHHHHHHhcCCCeEEEEEECCCCHHHHhhCHHHHHHHHHhcCceEEEEEeCCCCHHHHHHcCCCccCEEEEEe
Confidence 344443 56666 445677999999999999999999999999999976 999999999999999999999999999997
Q ss_pred CCeE-EEEEcCC-CHHHHHHHHhhh
Q 005108 690 NGSR-MKEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 690 ~G~~-~~~~~g~-~~~~l~~~~~~~ 712 (714)
+|.. +.++.|. +.+.|.++|.+.
T Consensus 98 ~~~~~~~~~~G~~~~~~l~~~l~~~ 122 (130)
T 2dml_A 98 ANKNKPEDYQGGRTGEAIVDAALSA 122 (130)
T ss_dssp SCTTSCEECCSCCSHHHHHHHHHHH
T ss_pred CCCCeEEEeecCCCHHHHHHHHHHH
Confidence 7766 7888998 899998888764
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.5e-12 Score=114.70 Aligned_cols=110 Identities=13% Similarity=0.129 Sum_probs=102.7
Q ss_pred HHHhHHhhCcCHHHHHHHHHHhhccCCCCH---HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHH
Q 005108 485 ARGNDLFKSERFTEACQAYGEGLRFDPSNS---VLYCNRAACWFKLGQWERSVEDSNQALLIQPNY---TKALLRRAASN 558 (714)
Q Consensus 485 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~ 558 (714)
.+|..++..|++++|+..|+++++.+|++. .+++.+|.++...|++++|+..|+++++.+|++ +.+++.+|.++
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHH
Confidence 459999999999999999999999999988 899999999999999999999999999999999 89999999999
Q ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005108 559 SKLEKWADAVRDFEVLRRELPDDNEIAESLFHAQVS 594 (714)
Q Consensus 559 ~~~g~~~eA~~~~~~al~~~p~~~~~~~~L~~~~~~ 594 (714)
..+|++++|+..|+++++.+|+++.+...+..+...
T Consensus 87 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l 122 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSI 122 (129)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHH
Confidence 999999999999999999999999887766655443
|
| >2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.7e-13 Score=122.55 Aligned_cols=85 Identities=19% Similarity=0.327 Sum_probs=78.9
Q ss_pred CCCceEEEeecCCCccccccchHHHHHHhhCC-CcEEEEEecccCcchhhhCCccccceEEEE-eCCeEEEEEcCC-CHH
Q 005108 627 LPGVSVVHFKSASNLHCKQISPYVETLCGRYP-SINFLKVDIDESPGVAHAENVRIVPTFKIY-KNGSRMKEIVCP-SRD 703 (714)
Q Consensus 627 ~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~-~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~-~~G~~~~~~~g~-~~~ 703 (714)
..++++|.||++||++|+.+.|.++++..+++ ++.|+.||+++.+++++.|+|.++||+++| ++|+++ ++.|. +.+
T Consensus 37 ~~k~~lv~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~~G~~~-~~~G~~~~~ 115 (136)
T 2l5l_A 37 GDKPAIVDFYADWCGPCKMVAPILDELAKEYDGQIVIYKVDTEKEQELAGAFGIRSIPSILFIPMEGKPE-MAQGAMPKA 115 (136)
T ss_dssp CSSCEEEEEECTTSHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCSSCEEEEECSSSCCE-EEESCCCHH
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhcCCEEEEEEeCCCCHHHHHHcCCCCCCEEEEECCCCcEE-EEeCCCCHH
Confidence 35689999999999999999999999999997 599999999999999999999999999999 999988 67787 999
Q ss_pred HHHHHHhhh
Q 005108 704 MLEHSVRHY 712 (714)
Q Consensus 704 ~l~~~~~~~ 712 (714)
.|+++|+++
T Consensus 116 ~l~~~l~~~ 124 (136)
T 2l5l_A 116 SFKKAIDEF 124 (136)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999875
|
| >1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.45 E-value=7.8e-14 Score=123.01 Aligned_cols=93 Identities=19% Similarity=0.318 Sum_probs=82.7
Q ss_pred hhhHHhhhccCCCceEEEeecCCCccccccchHHHHHHhhCC--CcEEEEEecccCcchhhhCCccccceEEEEeCCeEE
Q 005108 617 SLEQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYP--SINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRM 694 (714)
Q Consensus 617 ~~e~~~~~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~--~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~ 694 (714)
+.+.|...+.. .++|+||++||++|+.+.|.++++..+++ ++.|+.||+++.+++++.|+|.++||+++|++|+ +
T Consensus 13 ~~~~f~~~~~~--~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~G~-~ 89 (126)
T 1x5e_A 13 TDENWRELLEG--DWMIEFYAPWCPACQNLQPEWESFAEWGEDLEVNIAKVDVTEQPGLSGRFIINALPTIYHCKDGE-F 89 (126)
T ss_dssp CTTTHHHHTSS--EEEEEEECSSCHHHHHHHHHHHHHHHHHGGGTCEEEEEETTTCHHHHHHTTCCSSSEEEEEETTE-E
T ss_pred cHHHHHHHhCC--CEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECcCCHHHHHHcCCcccCEEEEEeCCe-E
Confidence 34567766643 38999999999999999999999998886 5999999999999999999999999999999999 5
Q ss_pred EEEcCC-CHHHHHHHHhhh
Q 005108 695 KEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 695 ~~~~g~-~~~~l~~~~~~~ 712 (714)
.++.|. +.++|.++|+++
T Consensus 90 ~~~~G~~~~~~l~~~l~~~ 108 (126)
T 1x5e_A 90 RRYQGPRTKKDFINFISDK 108 (126)
T ss_dssp EECCSCCCHHHHHHHHHTC
T ss_pred EEeecCCCHHHHHHHHHHH
Confidence 788898 999999999875
|
| >1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2 | Back alignment and structure |
|---|
Probab=99.45 E-value=8.3e-14 Score=121.51 Aligned_cols=95 Identities=26% Similarity=0.386 Sum_probs=86.0
Q ss_pred hhHHhhhccCCCceEEEeecCCCccccccchHHHHHHhhCC----CcEEEEEecccCcchhhhCCccccceEEEEeCCeE
Q 005108 618 LEQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYP----SINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSR 693 (714)
Q Consensus 618 ~e~~~~~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~----~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~ 693 (714)
.+.|...+...+++++.||++||++|+.+.|.++++..++. ++.|+.||+++.+++++.|+|.++||+++|++|+.
T Consensus 14 ~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~ 93 (120)
T 1mek_A 14 KSNFAEALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEESDLAQQYGVRGYPTIKFFRNGDT 93 (120)
T ss_dssp TTTHHHHHHHCSEEEEEEECSSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETTTCCSSHHHHTCCSSSEEEEEESSCS
T ss_pred hhhHHHHHccCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhccCCcEEEEEEcCCCCHHHHHHCCCCcccEEEEEeCCCc
Confidence 35666667677899999999999999999999999998874 58899999999999999999999999999999998
Q ss_pred E--EEEcCC-CHHHHHHHHhhh
Q 005108 694 M--KEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 694 ~--~~~~g~-~~~~l~~~~~~~ 712 (714)
+ .++.|. +.+.|.++|+++
T Consensus 94 ~~~~~~~g~~~~~~l~~~l~~~ 115 (120)
T 1mek_A 94 ASPKEYTAGREADDIVNWLKKR 115 (120)
T ss_dssp SSCEECCCCSSHHHHHHHHHTT
T ss_pred CCcccccCccCHHHHHHHHHhc
Confidence 7 888898 999999999875
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.45 E-value=3.7e-13 Score=124.30 Aligned_cols=133 Identities=14% Similarity=0.062 Sum_probs=108.2
Q ss_pred hhHHHHHHHHHHHHHhCcHHHHHHHHHHHhcc--------CCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHH
Q 005108 432 SEAYTFFVRAQIEMALGRFENAVTAAEKAGQI--------DPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAY 503 (714)
Q Consensus 432 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~ 503 (714)
..+..+..+|..++..|++++|+..|++++.+ +|.+..... + .-.....+.++|.++...|+|++|+.+|
T Consensus 9 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~nla~~~~~~~~~~~A~~~~ 86 (162)
T 3rkv_A 9 KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVE-L-DRKNIPLYANMSQCYLNIGDLHEAEETS 86 (162)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHH-H-HHTHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHH-H-HHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 44778999999999999999999999999998 333332100 0 0011122334599999999999999999
Q ss_pred HHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHhccHHH
Q 005108 504 GEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYT-KALLRRAASNSKLEKWAD 566 (714)
Q Consensus 504 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~e 566 (714)
+++++++|+++.+|+.+|.+|..+|++++|+.+|+++++++|++. .+...++.+..++++..+
T Consensus 87 ~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~~ 150 (162)
T 3rkv_A 87 SEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAEKKA 150 (162)
T ss_dssp HHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998 667777777766655543
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=99.45 E-value=2.9e-12 Score=111.48 Aligned_cols=110 Identities=23% Similarity=0.405 Sum_probs=104.8
Q ss_pred HHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccH
Q 005108 485 ARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKW 564 (714)
Q Consensus 485 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 564 (714)
.+|.++...|++++|+.+|+++++..|.+..+++.+|.++...|++++|+.+|+++++..|++..+++.+|.++...|++
T Consensus 14 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 93 (125)
T 1na0_A 14 NLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDY 93 (125)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCH
Confidence 34999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005108 565 ADAVRDFEVLRRELPDDNEIAESLFHAQVS 594 (714)
Q Consensus 565 ~eA~~~~~~al~~~p~~~~~~~~L~~~~~~ 594 (714)
++|+.+|+++++.+|++..+...+..++..
T Consensus 94 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 94 DEAIEYYQKALELDPNNAEAKQNLGNAKQK 123 (125)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence 999999999999999999999888877654
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=99.45 E-value=9.4e-13 Score=117.43 Aligned_cols=119 Identities=9% Similarity=0.017 Sum_probs=108.8
Q ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCC
Q 005108 434 AYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSN 513 (714)
Q Consensus 434 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~ 513 (714)
+..++.+|.+++..|++++|+.+|++++..+|++..++..+ |.++...|++++|+.+|+++++++|++
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l------------~~~~~~~~~~~~A~~~~~~al~~~p~~ 76 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNR------------ALCYLKMQQPEQALADCRRALELDGQS 76 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHH------------HHHHHHhcCHHHHHHHHHHHHHhCchh
Confidence 77899999999999999999999999999999999988876 999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHhccH
Q 005108 514 SVLYCNRAACWFKLGQWERSVEDSNQALLIQPN-----YTKALLRRAASNSKLEKW 564 (714)
Q Consensus 514 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~la~~~~~~g~~ 564 (714)
+.+++.+|.+|..+|++++|+..|+++++++|+ +..+...+..+..+....
T Consensus 77 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~~~~ 132 (137)
T 3q49_B 77 VKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNS 132 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999887 666776666666554443
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.45 E-value=3e-13 Score=121.35 Aligned_cols=104 Identities=17% Similarity=0.213 Sum_probs=95.0
Q ss_pred hhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005108 491 FKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQW----------ERSVEDSNQALLIQPNYTKALLRRAASNSK 560 (714)
Q Consensus 491 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~----------~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 560 (714)
.+.++|++|++.|+++++++|+++++|+++|.++..++++ ++|+..|+++++++|++..+|+++|.+|..
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 3456799999999999999999999999999999999875 599999999999999999999999999998
Q ss_pred hc-----------cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005108 561 LE-----------KWADAVRDFEVLRRELPDDNEIAESLFHAQVS 594 (714)
Q Consensus 561 ~g-----------~~~eA~~~~~~al~~~p~~~~~~~~L~~~~~~ 594 (714)
+| ++++|+++|++|++++|++......+..+...
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~~~ka 137 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKA 137 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTH
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhC
Confidence 85 89999999999999999999888877665433
|
| >3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.44 E-value=6.5e-14 Score=122.73 Aligned_cols=94 Identities=18% Similarity=0.225 Sum_probs=82.9
Q ss_pred hHH-hhhccCCCceEEEeecCCCccccccchHHHHHHhhCC-CcEEEEEecccCcchhhhCCccccceEEEEeCCeEEEE
Q 005108 619 EQF-RAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYP-SINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKE 696 (714)
Q Consensus 619 e~~-~~~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~-~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~~ 696 (714)
+.| ..++...++++++||++||++|+.+.|.++++..+++ ++.|+.||+++.+++++.|+|.++||+++|++|..+.+
T Consensus 11 ~~f~~~~~~~~~~~lv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~~~~~~ 90 (122)
T 3aps_A 11 QTFNEKVLQGKTHWVVDFYAPWCGPCQNFAPEFELLARMIKGKVRAGKVDCQAYPQTCQKAGIKAYPSVKLYQYERAKKS 90 (122)
T ss_dssp HHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTCEEEEEETTTCHHHHHHTTCCSSSEEEEEEEEGGGTE
T ss_pred HHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCcCCHHHHHHcCCCccceEEEEeCCCccce
Confidence 555 4466677899999999999999999999999999987 69999999999999999999999999999977766777
Q ss_pred EcCC-----CHHHHHHHHhhh
Q 005108 697 IVCP-----SRDMLEHSVRHY 712 (714)
Q Consensus 697 ~~g~-----~~~~l~~~~~~~ 712 (714)
+.|. +.+.|.++|+++
T Consensus 91 ~~g~~~~~~~~~~l~~~l~~~ 111 (122)
T 3aps_A 91 IWEEQINSRDAKTIAALIYGK 111 (122)
T ss_dssp EEEEEECCSCHHHHHHHHHHH
T ss_pred eeccccCcCCHHHHHHHHHHH
Confidence 7763 899999998874
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=99.44 E-value=2.9e-12 Score=111.48 Aligned_cols=117 Identities=26% Similarity=0.436 Sum_probs=110.9
Q ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCC
Q 005108 434 AYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSN 513 (714)
Q Consensus 434 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~ 513 (714)
...++.+|.++...|++++|+..|++++...|++...+..+ |.++...|++++|+.+|+++++..|.+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l------------a~~~~~~~~~~~A~~~~~~~~~~~~~~ 76 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNL------------GNAYYKQGDYDEAIEYYQKALELDPNN 76 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHH------------HHHHHHhCCHHHHHHHHHHHHHhCCcc
Confidence 56789999999999999999999999999999998887766 999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Q 005108 514 SVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLE 562 (714)
Q Consensus 514 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 562 (714)
..++..+|.++...|++++|+..|+++++++|++..++..++.++...|
T Consensus 77 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 77 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999987764
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=99.44 E-value=1.5e-12 Score=133.11 Aligned_cols=173 Identities=14% Similarity=0.109 Sum_probs=136.1
Q ss_pred HHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCH-----HHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhh
Q 005108 355 LSKCTDARKVGDWKSALREGDAAIAAGADFSP-----QLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFG 429 (714)
Q Consensus 355 ~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 429 (714)
...+..+...+++++|+..+++++...+.... .++..++.++...+++++|+.+|+++++..+....
T Consensus 79 ~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~-------- 150 (293)
T 3u3w_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGID-------- 150 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSC--------
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhccccc--------
Confidence 34456678899999999999999987664332 23445888999999999999999999987655421
Q ss_pred hhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccC---CCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHh
Q 005108 430 MLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQID---PRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEG 506 (714)
Q Consensus 430 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~a 506 (714)
......++..+|.+|..+|++++|+.+|+++++.. +.+.... +..+.++|.+|...|+|++|+.+++++
T Consensus 151 ~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~--------~~~~~nlg~~y~~~~~y~~A~~~~~~a 222 (293)
T 3u3w_A 151 VYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFD--------VKVRYNHAKALYLDSRYEESLYQVNKA 222 (293)
T ss_dssp TTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHH--------HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHH--------HHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 11235679999999999999999999999999532 1222211 112335699999999999999999999
Q ss_pred hccCCCC------HHHHHHHHHHHHHhC-CHHHHHHHHHHHHHh
Q 005108 507 LRFDPSN------SVLYCNRAACWFKLG-QWERSVEDSNQALLI 543 (714)
Q Consensus 507 l~~~p~~------~~~~~~la~~~~~~g-~~~~A~~~~~~al~~ 543 (714)
+++.+.. ..+++++|.+|.++| ++++|+++|++++.+
T Consensus 223 l~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 223 IEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 9875433 789999999999999 579999999999875
|
| >3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.5e-13 Score=132.94 Aligned_cols=96 Identities=18% Similarity=0.255 Sum_probs=87.9
Q ss_pred hhhHHhhhccCCCceEEEeecCCCccccccchHHHHHHhhCCC-cEEEEEecccCcchhhhCCccccceEEEEeCCeEEE
Q 005108 617 SLEQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYPS-INFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMK 695 (714)
Q Consensus 617 ~~e~~~~~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~-~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~ 695 (714)
+.+.|...+...++++|+||++||++|+.+.|.++++..++++ +.|+.||+++.+++++.|+|.++||+++|++|+.+.
T Consensus 103 ~~~~f~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~G~~~~ 182 (210)
T 3apq_A 103 ERREFDAAVNSGELWFVNFYSPGCSHCHDLAPTWREFAKEVDGLLRIGAVNCGDDRMLCRMKGVNSYPSLFIFRSGMAAV 182 (210)
T ss_dssp CHHHHHHHHHHSCCEEEEEECTTCHHHHHHHHHHHHHHHHTBTTBEEEEEETTTCHHHHHHTTCCSSSEEEEECTTSCCE
T ss_pred cHHHHHHHHccCCcEEEEEeCCCChhHHHHHHHHHHHHHHhcCceEEEEEECCccHHHHHHcCCCcCCeEEEEECCCcee
Confidence 3456777766778999999999999999999999999999865 999999999999999999999999999999999999
Q ss_pred EEcCC-CHHHHHHHHhhh
Q 005108 696 EIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 696 ~~~g~-~~~~l~~~~~~~ 712 (714)
++.|. +.+.|.++|+++
T Consensus 183 ~~~G~~~~~~l~~~i~~~ 200 (210)
T 3apq_A 183 KYNGDRSKESLVAFAMQH 200 (210)
T ss_dssp ECCSCCCHHHHHHHHHHH
T ss_pred EecCCCCHHHHHHHHHHh
Confidence 99998 999999999874
|
| >2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.8e-14 Score=129.21 Aligned_cols=94 Identities=17% Similarity=0.229 Sum_probs=80.9
Q ss_pred hhHHhhhccCCC--ceEEEeecCCCccccccchHHHHHHhhCC--CcEEEEEecccCcchhhhCCcc------ccceEEE
Q 005108 618 LEQFRAAVSLPG--VSVVHFKSASNLHCKQISPYVETLCGRYP--SINFLKVDIDESPGVAHAENVR------IVPTFKI 687 (714)
Q Consensus 618 ~e~~~~~i~~~~--~~vv~f~a~~c~~C~~~~p~l~~l~~~~~--~~~~~~vd~d~~~~l~~~~~v~------~~Pt~~~ 687 (714)
.+.|...+.... +++|+||++||++|+.+.|.++++..++. ++.|+.||+++.+++++.|+|. ++||+++
T Consensus 14 ~~~f~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~~~~~~~Pt~~~ 93 (137)
T 2dj0_A 14 DKTIDEELERDKRVTWIVEFFANWSNDCQSFAPIYADLSLKYNCTGLNFGKVDVGRYTDVSTRYKVSTSPLTKQLPTLIL 93 (137)
T ss_dssp TTHHHHHHHHSTTSCEEEEECCTTCSTTTTTHHHHHHHHHHHCSSSCEEEECCTTTCHHHHHHTTCCCCSSSSCSSEEEE
T ss_pred HhhHHHHHhcCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEeCccCHHHHHHccCcccCCcCCCCEEEE
Confidence 356666564433 88999999999999999999999999985 6999999999999999999999 9999999
Q ss_pred EeCCeEEEEEcCC-CHHHHHHHHhh
Q 005108 688 YKNGSRMKEIVCP-SRDMLEHSVRH 711 (714)
Q Consensus 688 ~~~G~~~~~~~g~-~~~~l~~~~~~ 711 (714)
|++|+++.++.|. +.+.|.++|.+
T Consensus 94 ~~~G~~~~~~~G~~~~~~l~~~l~~ 118 (137)
T 2dj0_A 94 FQGGKEAMRRPQIDKKGRAVSWTFS 118 (137)
T ss_dssp ESSSSEEEEESCBCSSSCBCCCCCC
T ss_pred EECCEEEEEecCcCchHHHHHHHhc
Confidence 9999999999998 76666555443
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.44 E-value=2.1e-12 Score=111.25 Aligned_cols=114 Identities=14% Similarity=0.158 Sum_probs=108.0
Q ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCC
Q 005108 434 AYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSN 513 (714)
Q Consensus 434 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~ 513 (714)
+..++.+|..+...|++++|+..|++++..+|.+..++..+ |.++...|++++|+.+|+++++.+|++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~------------a~~~~~~~~~~~A~~~~~~~~~~~~~~ 71 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNR------------SAAYAKKGDYQKAYEDGCKTVDLKPDW 71 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH------------HHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHH------------HHHHHhhccHHHHHHHHHHHHHhCccc
Confidence 66789999999999999999999999999999999888766 999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005108 514 SVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNS 559 (714)
Q Consensus 514 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 559 (714)
..+++.+|.++..+|++++|+..|+++++++|++..++..++.+..
T Consensus 72 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 117 (118)
T 1elw_A 72 GKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA 117 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999998887753
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.44 E-value=5.1e-13 Score=116.77 Aligned_cols=102 Identities=20% Similarity=0.144 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHH
Q 005108 436 TFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSV 515 (714)
Q Consensus 436 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~ 515 (714)
.++.+|..+...|++++|+..|+++++.+|++..+|..+ |.++...|++++|+..|+++++++|++..
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~l------------g~~~~~~g~~~~A~~~~~~al~l~P~~~~ 86 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSL------------GLTQAENEKDGLAIIALNHARMLDPKDIA 86 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence 478899999999999999999999999999999999877 99999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHH
Q 005108 516 LYCNRAACWFKLGQWERSVEDSNQALLIQPNYTK 549 (714)
Q Consensus 516 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 549 (714)
+++.+|.+|..+|++++|+..|+++++++|++..
T Consensus 87 ~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~ 120 (121)
T 1hxi_A 87 VHAALAVSHTNEHNANAALASLRAWLLSQPQYEQ 120 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCCC
Confidence 9999999999999999999999999999998753
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=99.44 E-value=2.1e-12 Score=113.47 Aligned_cols=115 Identities=26% Similarity=0.378 Sum_probs=107.1
Q ss_pred HHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC-------HHHHHHHH
Q 005108 483 ARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNY-------TKALLRRA 555 (714)
Q Consensus 483 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~la 555 (714)
+..+|..+...|++++|+.+|+++++.+|.+..+++.+|.++...|++++|+.+|++++++.|++ ..+++.+|
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la 86 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHH
Confidence 44569999999999999999999999999999999999999999999999999999999998877 89999999
Q ss_pred HHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhh
Q 005108 556 ASNSKLEKWADAVRDFEVLRRELPDDNEIAESLFHAQVSLKKS 598 (714)
Q Consensus 556 ~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~L~~~~~~l~~~ 598 (714)
.++..+|++++|+++|++++++.| ++.+...+..+...+++.
T Consensus 87 ~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~ 128 (131)
T 1elr_A 87 NSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILKEQ 128 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999 688888888888777654
|
| >1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.44 E-value=4.2e-14 Score=123.14 Aligned_cols=94 Identities=9% Similarity=0.107 Sum_probs=78.6
Q ss_pred hhhHHhhhccCCCceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEeccc------CcchhhhCCccccceEEEEeC
Q 005108 617 SLEQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDE------SPGVAHAENVRIVPTFKIYKN 690 (714)
Q Consensus 617 ~~e~~~~~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~------~~~l~~~~~v~~~Pt~~~~~~ 690 (714)
+.+.+...+...+.++++||++||++|+.+.|.++++..++. ..+..+|++. ..++++.|+|.++||+++|++
T Consensus 18 ~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~l~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~i~~~Pt~~~~~~ 96 (118)
T 1zma_A 18 TVVRAQEALDKKETATFFIGRKTCPYCRKFAGTLSGVVAETK-AHIYFINSEEPSQLNDLQAFRSRYGIPTVPGFVHITD 96 (118)
T ss_dssp CHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHC-CCCEEEETTCGGGHHHHHHHHHHHTCCSSCEEEEEET
T ss_pred CHHHHHHHHhCCCeEEEEEECCCCccHHHHHHHHHHHHHhcC-CeEEEEECCCcCcHHHHHHHHHHcCCCCCCeEEEEEC
Confidence 445666667677899999999999999999999999998875 3344454443 457889999999999999999
Q ss_pred CeEEEEEcCC-CHHHHHHHHhh
Q 005108 691 GSRMKEIVCP-SRDMLEHSVRH 711 (714)
Q Consensus 691 G~~~~~~~g~-~~~~l~~~~~~ 711 (714)
|+.+.++.|. +.+.|+++|++
T Consensus 97 G~~~~~~~G~~~~~~l~~~l~k 118 (118)
T 1zma_A 97 GQINVRCDSSMSAQEIKDFAGL 118 (118)
T ss_dssp TEEEEECCTTCCHHHHHHHHTC
T ss_pred CEEEEEecCCCCHHHHHHHhhC
Confidence 9999999999 99999999864
|
| >1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.43 E-value=3.6e-13 Score=109.42 Aligned_cols=79 Identities=24% Similarity=0.418 Sum_probs=73.8
Q ss_pred ceEEEeecCCCccccccchHHHHHHhhCC-CcEEEEEecccCcchhhhCCccccceEEEEeCCeEEEEEcCC-CHHHHHH
Q 005108 630 VSVVHFKSASNLHCKQISPYVETLCGRYP-SINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKEIVCP-SRDMLEH 707 (714)
Q Consensus 630 ~~vv~f~a~~c~~C~~~~p~l~~l~~~~~-~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~~~~g~-~~~~l~~ 707 (714)
+.++.||++||++|+.+.|.++++..+++ ++.|+.+|+++++++++.|+|.++||+++ ||+. ++.|. +.++|++
T Consensus 4 ~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~--~G~~--~~~G~~~~~~l~~ 79 (85)
T 1fo5_A 4 VKIELFTSPMCPHCPAAKRVVEEVANEMPDAVEVEYINVMENPQKAMEYGIMAVPTIVI--NGDV--EFIGAPTKEALVE 79 (85)
T ss_dssp EEEEEEECCCSSCCCTHHHHHHHHHHHCSSSEEEEEEESSSSCCTTTSTTTCCSSEEEE--TTEE--ECCSSSSSHHHHH
T ss_pred eEEEEEeCCCCCchHHHHHHHHHHHHHcCCceEEEEEECCCCHHHHHHCCCcccCEEEE--CCEE--eeecCCCHHHHHH
Confidence 67899999999999999999999999998 69999999999999999999999999988 9987 78898 9999999
Q ss_pred HHhhh
Q 005108 708 SVRHY 712 (714)
Q Consensus 708 ~~~~~ 712 (714)
+|+++
T Consensus 80 ~l~~~ 84 (85)
T 1fo5_A 80 AIKKR 84 (85)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 99874
|
| >1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.42 E-value=3.2e-13 Score=109.80 Aligned_cols=79 Identities=24% Similarity=0.271 Sum_probs=73.6
Q ss_pred ceEEEeecCCCccccccchHHHHHHhhCC-CcEEEEEecccCcchhhhCCccccceEEEEeCCeEEEEEcCC-CHHHHHH
Q 005108 630 VSVVHFKSASNLHCKQISPYVETLCGRYP-SINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKEIVCP-SRDMLEH 707 (714)
Q Consensus 630 ~~vv~f~a~~c~~C~~~~p~l~~l~~~~~-~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~~~~g~-~~~~l~~ 707 (714)
+.++.||++||++|+.+.|.++++..+++ ++.|+.+|+++++++++.|+|.++||+++ ||+. ++.|. +.++|++
T Consensus 3 ~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~--~G~~--~~~G~~~~~~l~~ 78 (85)
T 1nho_A 3 VNIEVFTSPTCPYCPMAIEVVDEAKKEFGDKIDVEKIDIMVDREKAIEYGLMAVPAIAI--NGVV--RFVGAPSREELFE 78 (85)
T ss_dssp CCEEEESCSSSCCSTTHHHHHHHHHHHHCSSCCEEEECTTTCGGGGGGTCSSCSSEEEE--TTTE--EEECSSCCHHHHH
T ss_pred EEEEEEECCCCcchHHHHHHHHHHHHHhcCCeEEEEEECCCCHHHHHhCCceeeCEEEE--CCEE--EEccCCCHHHHHH
Confidence 46899999999999999999999999987 69999999999999999999999999988 9997 78888 9999999
Q ss_pred HHhhh
Q 005108 708 SVRHY 712 (714)
Q Consensus 708 ~~~~~ 712 (714)
+|+++
T Consensus 79 ~l~~~ 83 (85)
T 1nho_A 79 AINDE 83 (85)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99875
|
| >2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A | Back alignment and structure |
|---|
Probab=99.42 E-value=7.2e-14 Score=124.66 Aligned_cols=98 Identities=11% Similarity=0.233 Sum_probs=85.2
Q ss_pred ehhhhHHhhhccC--CCceEEEeecCCCccccccchHH---HHHHhhCCCcEEEEEec----ccCcchhhhCCccccceE
Q 005108 615 VSSLEQFRAAVSL--PGVSVVHFKSASNLHCKQISPYV---ETLCGRYPSINFLKVDI----DESPGVAHAENVRIVPTF 685 (714)
Q Consensus 615 i~~~e~~~~~i~~--~~~~vv~f~a~~c~~C~~~~p~l---~~l~~~~~~~~~~~vd~----d~~~~l~~~~~v~~~Pt~ 685 (714)
+.+.+.+...+.. .++++|+||++||++|+.+.|.+ .++...++++.|+.||+ +...++++.|+|.++||+
T Consensus 16 ~~~~~~~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~~~~~~~l~~~~~~~~~~~vd~~~~~~~~~~l~~~~~v~~~Pt~ 95 (134)
T 2fwh_A 16 IKTVDELNQALVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALADTVLLQANVTANDAQDVALLKHLNVLGLPTI 95 (134)
T ss_dssp CCSHHHHHHHHHHHTTSCEEEEEECTTCHHHHHHHHHTTTSHHHHHHTTTSEEEEEECTTCCHHHHHHHHHTTCCSSSEE
T ss_pred ecCHHHHHHHHHHhcCCcEEEEEECCCCHHHHHHHHHhcCCHHHHHHhcCcEEEEEeCCCCcchHHHHHHHcCCCCCCEE
Confidence 4445555555532 67899999999999999999998 89999998999999999 567789999999999999
Q ss_pred EEE-eCCeEE--EEEcCC-CHHHHHHHHhhh
Q 005108 686 KIY-KNGSRM--KEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 686 ~~~-~~G~~~--~~~~g~-~~~~l~~~~~~~ 712 (714)
++| ++|+++ .++.|. +.++|++.|+++
T Consensus 96 ~~~d~~G~~v~~~~~~G~~~~~~l~~~l~~~ 126 (134)
T 2fwh_A 96 LFFDGQGQEHPQARVTGFMDAETFSAHLRDR 126 (134)
T ss_dssp EEECTTSCBCGGGCBCSCCCHHHHHHHHHHC
T ss_pred EEECCCCCEeeeeeeeeccCHHHHHHHHHhc
Confidence 999 999998 789999 999999999875
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.42 E-value=3.2e-12 Score=115.26 Aligned_cols=115 Identities=14% Similarity=0.111 Sum_probs=106.3
Q ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCC---HHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccC
Q 005108 434 AYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRN---VEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFD 510 (714)
Q Consensus 434 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~ 510 (714)
...++.+|..+...|++++|+.+|+++++.+|++ ..++..+ |.++...|++++|+.+|+++++.+
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~------------a~~~~~~~~~~~A~~~~~~~~~~~ 95 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNR------------AACHLKLEDYDKAETEASKAIEKD 95 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHH------------HHHHHHHccHHHHHHHHHHHHhhC
Confidence 7789999999999999999999999999999987 5555544 999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005108 511 PSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSK 560 (714)
Q Consensus 511 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 560 (714)
|++..+++.+|.++..+|++++|+.+|+++++++|++..++..++.+..+
T Consensus 96 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 145 (148)
T 2dba_A 96 GGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGP 145 (148)
T ss_dssp SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999998888877543
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=99.41 E-value=1.3e-12 Score=137.96 Aligned_cols=118 Identities=30% Similarity=0.505 Sum_probs=110.7
Q ss_pred HHHHhHHhhCcCHHHHHHHHHHhhc----------------cCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC
Q 005108 484 RARGNDLFKSERFTEACQAYGEGLR----------------FDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNY 547 (714)
Q Consensus 484 ~~~g~~~~~~g~~~~A~~~~~~al~----------------~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 547 (714)
..+|..+++.|+|++|+..|+++++ .+|.+..+|+++|.+|.++|++++|+++|+++++++|++
T Consensus 227 ~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~ 306 (370)
T 1ihg_A 227 KNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSN 306 (370)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchh
Confidence 3459999999999999999999998 778889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhccc
Q 005108 548 TKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAESLFHAQVSLKKSRGE 601 (714)
Q Consensus 548 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~L~~~~~~l~~~~~~ 601 (714)
..+++.+|.+|..+|++++|+.+|+++++++|++..++..+..++..+++.++.
T Consensus 307 ~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 307 TKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998887765543
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=99.41 E-value=7.7e-14 Score=152.72 Aligned_cols=136 Identities=17% Similarity=0.152 Sum_probs=121.8
Q ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCC
Q 005108 434 AYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSN 513 (714)
Q Consensus 434 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~ 513 (714)
+..++.+|.++...|++++|+++|+++++++|++..++..+ |.++.++|++++|+++|+++++++|++
T Consensus 6 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~l------------g~~~~~~g~~~~A~~~~~~al~l~p~~ 73 (477)
T 1wao_1 6 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNR------------SLAYLRTECYGYALGDATRAIELDKKY 73 (477)
T ss_dssp HTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHH------------HHHHHHhcCHHHHHHHHHHHHHhCCCC
Confidence 44567778888999999999999999999999999988866 999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH--HHHhccHHHHHHHHH-----------HHHHhCCC
Q 005108 514 SVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAAS--NSKLEKWADAVRDFE-----------VLRRELPD 580 (714)
Q Consensus 514 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~--~~~~g~~~eA~~~~~-----------~al~~~p~ 580 (714)
+.+++++|.+|..+|++++|++.|+++++++|++..++..++.+ +.++|++++|++.++ ++++++|+
T Consensus 74 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~ 153 (477)
T 1wao_1 74 IKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDE 153 (477)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhcccccc
Confidence 99999999999999999999999999999999999999999988 899999999999999 77777765
Q ss_pred C
Q 005108 581 D 581 (714)
Q Consensus 581 ~ 581 (714)
.
T Consensus 154 ~ 154 (477)
T 1wao_1 154 Y 154 (477)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >3ga4_A Dolichyl-diphosphooligosaccharide-protein glycosyltransferase subunit OST6; oxidoreductase, active site loop, redox state, membrane; HET: PG4; 1.30A {Saccharomyces cerevisiae} PDB: 3g7y_A 3g9b_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=2.6e-13 Score=124.67 Aligned_cols=96 Identities=10% Similarity=0.141 Sum_probs=79.8
Q ss_pred hhhHHhhhccC--CCceEEEeec-------CCCccccccchHHHHHHhhCC------CcEEEEEecccCcchhhhCCccc
Q 005108 617 SLEQFRAAVSL--PGVSVVHFKS-------ASNLHCKQISPYVETLCGRYP------SINFLKVDIDESPGVAHAENVRI 681 (714)
Q Consensus 617 ~~e~~~~~i~~--~~~~vv~f~a-------~~c~~C~~~~p~l~~l~~~~~------~~~~~~vd~d~~~~l~~~~~v~~ 681 (714)
+.+.|++.+.. +..++|+||| .||++|+++.|.+++++..+. .+.|++||+|++++++++|+|++
T Consensus 24 t~~nF~~~v~~~~~~~vvV~F~A~~~~~~~~wCgpCk~l~P~~e~lA~~~~~~~~~~~v~f~kvD~d~~~~la~~~~I~s 103 (178)
T 3ga4_A 24 TADNYPLLSRGVPGYFNILYITMRGTNSNGMSCQLCHDFEKTYHAVADVIRSQAPQSLNLFFTVDVNEVPQLVKDLKLQN 103 (178)
T ss_dssp CTTTHHHHTTCCTTCEEEEEEECCSBCTTSCBCHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEETTTCHHHHHHTTCCS
T ss_pred CHHHHHHHHcccCCCcEEEEEeCCCCCCCCCCChhHHHHHHHHHHHHHHhhhccCCCCEEEEEEECccCHHHHHHcCCCC
Confidence 34677777643 4479999999 499999999999999998874 48999999999999999999999
Q ss_pred cceEEEEeCCeEE------------EEE----c-CCCHHHHHHHHhhh
Q 005108 682 VPTFKIYKNGSRM------------KEI----V-CPSRDMLEHSVRHY 712 (714)
Q Consensus 682 ~Pt~~~~~~G~~~------------~~~----~-g~~~~~l~~~~~~~ 712 (714)
+||+++|++|... .++ . |.+.+.|.+||.+.
T Consensus 104 iPtl~~F~~g~~~~~~~~~~~~~~~~~y~~~~~~~~~ae~la~fi~~~ 151 (178)
T 3ga4_A 104 VPHLVVYPPAESNKQSQFEWKTSPFYQYSLVPENAENTLQFGDFLAKI 151 (178)
T ss_dssp SCEEEEECCCCGGGGGGCCTTTSCCEEECCCGGGTTCHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCCccccccccCCcceeecccCCCcCHHHHHHHHHHh
Confidence 9999999998632 233 2 45999999999763
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.40 E-value=4.5e-10 Score=123.02 Aligned_cols=318 Identities=10% Similarity=-0.021 Sum_probs=219.5
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHhc---CCCcHHHHHH
Q 005108 240 GDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGR-IGEAVKECEEAVRL---DPNYWRAHQR 315 (714)
Q Consensus 240 ~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~---~p~~~~a~~~ 315 (714)
+.+...+..+...+-.|+++.+..+|++++...| +...|........+.+. .+.....|+.++.. ++.....|..
T Consensus 12 ~~aR~vyer~l~~~P~~~~e~~~~iferal~~~p-s~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~ 90 (493)
T 2uy1_A 12 SSPSAIMEHARRLYMSKDYRSLESLFGRCLKKSY-NLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKE 90 (493)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCC-CHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHH
Confidence 3566777777778878999999999999999888 78888888877777663 45677788888864 6778889988
Q ss_pred HHHHHH----HcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHH---HH----HhHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 005108 316 LGSLLV----RLGQVENARRHLCLSGQQADPTEVHRLQVVEKH---LS----KCTDARKVGDWKSALREGDAAIAAGADF 384 (714)
Q Consensus 316 la~~~~----~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~---~~----~a~~~~~~g~~~~Al~~~~~al~~~p~~ 384 (714)
.+..+. ..++.+.+...|++++..+.............+ .+ ..........+..|...|+.+...-+..
T Consensus 91 Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~ 170 (493)
T 2uy1_A 91 YIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGW 170 (493)
T ss_dssp HHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhc
Confidence 887754 356788999999999984332221111111110 00 0111122344555666666665543333
Q ss_pred CHHHHHHHHHHHHHc--CC-----HHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHH
Q 005108 385 SPQLSMCRVEALLKL--HQ-----LEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAA 457 (714)
Q Consensus 385 ~~~~~~~la~~~~~~--g~-----~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 457 (714)
....|......-... +- .+.....|++++...|.. ..+|+..+..+...|+.++|...|
T Consensus 171 s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~--------------~~lW~~ya~~~~~~~~~~~ar~i~ 236 (493)
T 2uy1_A 171 SVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYA--------------EEVYFFYSEYLIGIGQKEKAKKVV 236 (493)
T ss_dssp SHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTC--------------HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCC--------------HHHHHHHHHHHHHcCCHHHHHHHH
Confidence 444554433332221 11 345678999999999987 788999999999999999999999
Q ss_pred HHHhccCCCCHHHHHHHHhHHH----------------------------HHHHHHHHhHHhhCcCHHHHHHHHHHhhcc
Q 005108 458 EKAGQIDPRNVEVAVLLNNVKL----------------------------VARARARGNDLFKSERFTEACQAYGEGLRF 509 (714)
Q Consensus 458 ~~al~~~p~~~~~~~~l~~l~~----------------------------~~~~~~~g~~~~~~g~~~~A~~~~~~al~~ 509 (714)
++++.. |.+...|..+..+.. ...+...+..+.+.+..+.|...|+++ +.
T Consensus 237 erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~ 314 (493)
T 2uy1_A 237 ERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN 314 (493)
T ss_dssp HHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT
T ss_pred HHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC
Confidence 999999 998877765533200 011223344444567788888899888 43
Q ss_pred CCCCHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHH
Q 005108 510 DPSNSVLYCNRAACWFKLG-QWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVL 574 (714)
Q Consensus 510 ~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~a 574 (714)
.+....+|...|.+....+ +.+.|...|+.+++..|+.+..+..++......|+.+.|...|+++
T Consensus 315 ~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 315 EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3335567777777666666 5888999999999888888888777888788888888888888876
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.40 E-value=2.4e-13 Score=141.91 Aligned_cols=152 Identities=13% Similarity=0.037 Sum_probs=80.2
Q ss_pred hhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHH-----HHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHh
Q 005108 432 SEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVL-----LNNVKLVARARARGNDLFKSERFTEACQAYGEG 506 (714)
Q Consensus 432 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~-----l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~a 506 (714)
..+..++.+|..++..|++++|+..|++++.+.|++...... .........+.++|.+|.+.|+|++|+.+|+++
T Consensus 177 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~a 256 (338)
T 2if4_A 177 GAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIV 256 (338)
T ss_dssp HHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 346789999999999999999999999999999876520000 000000112334577777777777777777777
Q ss_pred hccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHhccHHHHHHHHHHHHHhCCCCHH
Q 005108 507 LRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASN-SKLEKWADAVRDFEVLRRELPDDNE 583 (714)
Q Consensus 507 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~-~~~g~~~eA~~~~~~al~~~p~~~~ 583 (714)
++++|++..+|+++|.+|..+|++++|+.+|+++++++|++..++..++.+. ...+..+++...|.+++...|+++.
T Consensus 257 l~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 257 LTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDEGGA 334 (338)
T ss_dssp HHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------------------------
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCC
Confidence 7777777777777777777777777777777777777777777777777773 4455666777777777777776543
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.40 E-value=6.8e-13 Score=115.19 Aligned_cols=101 Identities=14% Similarity=0.084 Sum_probs=90.2
Q ss_pred hCcCHHHHHHHHHHhhcc---CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHH
Q 005108 492 KSERFTEACQAYGEGLRF---DPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAV 568 (714)
Q Consensus 492 ~~g~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~ 568 (714)
..|++++|+.+|++++++ +|++..+++++|.+|..+|++++|+..|+++++++|++..+++.+|.++..+|++++|+
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 468999999999999999 68889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHH
Q 005108 569 RDFEVLRRELPDDNEIAESLFHAQ 592 (714)
Q Consensus 569 ~~~~~al~~~p~~~~~~~~L~~~~ 592 (714)
..|+++++..|+++.+......+.
T Consensus 82 ~~~~~al~~~p~~~~~~~~~~ai~ 105 (117)
T 3k9i_A 82 ELLLKIIAETSDDETIQSYKQAIL 105 (117)
T ss_dssp HHHHHHHHHHCCCHHHHHTHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHH
Confidence 999999999999998776544443
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.3e-12 Score=124.98 Aligned_cols=161 Identities=13% Similarity=0.115 Sum_probs=122.9
Q ss_pred HHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCC---CHHHHH
Q 005108 396 LLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPR---NVEVAV 472 (714)
Q Consensus 396 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~ 472 (714)
++..|++++|++.++.+.. +|.. ...++..+|.++...|++++|+.++++++.+... .....
T Consensus 2 ~~~~g~~~~A~~~~~~~~~-~~~~-------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~- 66 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLA-HPAT-------------ASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEH- 66 (203)
T ss_dssp -----CHHHHHHHHHHHHT-STTT-------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHH-
T ss_pred ccccccHHHHHHHHHHhcC-ChHH-------------HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHH-
Confidence 3567888999884444333 3322 3778999999999999999999999999974321 11111
Q ss_pred HHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhcc---CCC----CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Q 005108 473 LLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRF---DPS----NSVLYCNRAACWFKLGQWERSVEDSNQALLIQP 545 (714)
Q Consensus 473 ~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 545 (714)
..+..+|.++...|++++|+.+|++++++ .++ ...++.++|.++..+|++++|+.++++++++.+
T Consensus 67 --------~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 138 (203)
T 3gw4_A 67 --------RALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQ 138 (203)
T ss_dssp --------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 12234599999999999999999999987 442 356789999999999999999999999997532
Q ss_pred --CC----HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Q 005108 546 --NY----TKALLRRAASNSKLEKWADAVRDFEVLRRELP 579 (714)
Q Consensus 546 --~~----~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p 579 (714)
.+ ..++..+|.++..+|++++|+++|++++++..
T Consensus 139 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 178 (203)
T 3gw4_A 139 QADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFA 178 (203)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 22 24568999999999999999999999998753
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.2e-12 Score=111.57 Aligned_cols=106 Identities=16% Similarity=0.203 Sum_probs=99.7
Q ss_pred CCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Q 005108 464 DPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLI 543 (714)
Q Consensus 464 ~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 543 (714)
+|++...+..+ |.++...|++++|+.+|+++++.+|.+..+++.+|.++..+|++++|+.+|++++++
T Consensus 2 ~p~~~~~~~~~------------~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~ 69 (112)
T 2kck_A 2 VDQNPEEYYLE------------GVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINV 69 (112)
T ss_dssp CCSSTTGGGGH------------HHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred CCCcHHHHHHH------------HHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 46666666554 999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC--CHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHhCCCC
Q 005108 544 QPN--YTKALLRRAASNSKL-EKWADAVRDFEVLRRELPDD 581 (714)
Q Consensus 544 ~p~--~~~~~~~la~~~~~~-g~~~eA~~~~~~al~~~p~~ 581 (714)
+|+ +..+++.+|.++..+ |++++|+++++++++..|.+
T Consensus 70 ~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 70 IEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp SCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred CcccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence 999 999999999999999 99999999999999999875
|
| >1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A {Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A | Back alignment and structure |
|---|
Probab=99.39 E-value=2.9e-13 Score=118.70 Aligned_cols=100 Identities=21% Similarity=0.274 Sum_probs=87.8
Q ss_pred eeeehhhhHHhhhccC--CCceEEEeecC-------CCccccccchHHHHHHhhCC-CcEEEEEec-------ccCcchh
Q 005108 612 VEEVSSLEQFRAAVSL--PGVSVVHFKSA-------SNLHCKQISPYVETLCGRYP-SINFLKVDI-------DESPGVA 674 (714)
Q Consensus 612 ~~~i~~~e~~~~~i~~--~~~~vv~f~a~-------~c~~C~~~~p~l~~l~~~~~-~~~~~~vd~-------d~~~~l~ 674 (714)
...+.+.+.|...+.. .++++++||++ ||++|+.+.|.++++..+++ ++.|+.||+ +..++++
T Consensus 6 ~v~~~~~~~~~~~~~~~~~~~v~v~F~a~~~~~~~~wC~~C~~~~p~l~~~~~~~~~~~~~~~vd~~~~~~~~d~~~~~~ 85 (123)
T 1wou_A 6 EVSVSGFEEFHRAVEQHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISEGCVFIYCQVGEKPYWKDPNNDFR 85 (123)
T ss_dssp EEEEESHHHHHHHHHTTTTSEEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCCTTEEEEEEECCCHHHHHCTTCHHH
T ss_pred eEEeccHHHHHHHHHHhCCCEEEEEEEccCCCCCCCcCHHHHHhhHHHHHHHHHcCCCcEEEEEECCCchhhhchhHHHH
Confidence 3456667788877755 77999999999 99999999999999999996 699999999 7899999
Q ss_pred hhCCccccceEEEEeCCeEEEEEcCCCHHHHHHHHhh
Q 005108 675 HAENVRIVPTFKIYKNGSRMKEIVCPSRDMLEHSVRH 711 (714)
Q Consensus 675 ~~~~v~~~Pt~~~~~~G~~~~~~~g~~~~~l~~~~~~ 711 (714)
+.|+|.++||+++|++|.++....|.+.+.|+++|++
T Consensus 86 ~~~~i~~~Pt~~~~~~~~~~~g~~~~~~~~l~~~i~~ 122 (123)
T 1wou_A 86 KNLKVTAVPTLLKYGTPQKLVESECLQANLVEMLFSE 122 (123)
T ss_dssp HHHCCCSSSEEEETTSSCEEEGGGGGCHHHHHHHHHC
T ss_pred HHCCCCeeCEEEEEcCCceEeccccCCHHHHHHHHhc
Confidence 9999999999999999888877777788999998864
|
| >3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa} | Back alignment and structure |
|---|
Probab=99.39 E-value=2.1e-13 Score=121.50 Aligned_cols=88 Identities=10% Similarity=0.130 Sum_probs=80.9
Q ss_pred cCCCceEEEeecCCCccccccchHHH--HHHhhC-CCcEEEEEec---ccCcchhhhCCc---cccceEEEE-eCCeEEE
Q 005108 626 SLPGVSVVHFKSASNLHCKQISPYVE--TLCGRY-PSINFLKVDI---DESPGVAHAENV---RIVPTFKIY-KNGSRMK 695 (714)
Q Consensus 626 ~~~~~~vv~f~a~~c~~C~~~~p~l~--~l~~~~-~~~~~~~vd~---d~~~~l~~~~~v---~~~Pt~~~~-~~G~~~~ 695 (714)
...++++|+||++||++|+.+.|.++ ++...+ .++.|+.||+ ++..++++.|+| .++||+++| ++|+++.
T Consensus 27 ~~~k~vlv~f~a~wC~~C~~~~~~l~~~~~~~~~~~~~~~~~vd~~~~~~~~~l~~~~~v~~~~~~Pt~~~~d~~G~~~~ 106 (133)
T 3fk8_A 27 RTHKPTLLVFGANWCTDCRALDKSLRNQKNTALIAKHFEVVKIDVGNFDRNLELSQAYGDPIQDGIPAVVVVNSDGKVRY 106 (133)
T ss_dssp HHTCCEEEEEECTTCHHHHHHHHHHTSHHHHHHHHHHCEEEEEECTTTTSSHHHHHHTTCGGGGCSSEEEEECTTSCEEE
T ss_pred hcCCcEEEEEcCCCCHHHHHHHHHhCCHHHHHHhcCCEEEEEEeCCcccchHHHHHHhCCccCCccceEEEECCCCCEEE
Confidence 45779999999999999999999999 888887 4699999999 899999999999 999999999 9999999
Q ss_pred EEcC-------C-CHHHHHHHHhhhc
Q 005108 696 EIVC-------P-SRDMLEHSVRHYS 713 (714)
Q Consensus 696 ~~~g-------~-~~~~l~~~~~~~~ 713 (714)
+..| . +.++++++|+++.
T Consensus 107 ~~~g~~~~~~~~~~~~~l~~~l~~l~ 132 (133)
T 3fk8_A 107 TTKGGELANARKMSDQGIYDFFAKIT 132 (133)
T ss_dssp ECCSCTTTTGGGSCHHHHHHHHHHHH
T ss_pred EecCCcccccccCCHHHHHHHHHHhc
Confidence 9999 5 8999999998863
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=99.38 E-value=4e-12 Score=134.19 Aligned_cols=127 Identities=18% Similarity=0.210 Sum_probs=114.9
Q ss_pred hhHHHHHHHHHHHHHhCcHHHHHHHHHHHhc----------------cCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcC
Q 005108 432 SEAYTFFVRAQIEMALGRFENAVTAAEKAGQ----------------IDPRNVEVAVLLNNVKLVARARARGNDLFKSER 495 (714)
Q Consensus 432 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~----------------~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~ 495 (714)
..+..+..+|..++..|++++|+..|+++++ .+|.+..++. ++|.+|+++|+
T Consensus 221 ~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~------------nla~~~~~~g~ 288 (370)
T 1ihg_A 221 LISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVL------------NIGACKLKMSD 288 (370)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHH------------HHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHH------------HHHHHHHhccC
Confidence 3466789999999999999999999999998 4444444444 45999999999
Q ss_pred HHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHH
Q 005108 496 FTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRD 570 (714)
Q Consensus 496 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~ 570 (714)
+++|+.+|+++++++|+++.+|+.+|.+|..+|++++|+++|+++++++|++..++..++.++..+++++++.+.
T Consensus 289 ~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 289 WQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp HHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999888654
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.1e-11 Score=109.02 Aligned_cols=115 Identities=14% Similarity=0.111 Sum_probs=102.9
Q ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCH---HHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCC
Q 005108 436 TFFVRAQIEMALGRFENAVTAAEKAGQIDPRNV---EVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPS 512 (714)
Q Consensus 436 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~ 512 (714)
.++.+|.++...|++++|+..|+++++.+|++. .+++.+ |.++...|++++|+.+|+++++.+|+
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l------------g~~~~~~~~~~~A~~~~~~~~~~~p~ 71 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWL------------GESYYATRNFQLAEAQFRDLVSRYPT 71 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHH------------HHHHHHhccHHHHHHHHHHHHHHCCC
Confidence 478899999999999999999999999999987 566655 99999999999999999999999999
Q ss_pred C---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Q 005108 513 N---SVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLE 562 (714)
Q Consensus 513 ~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 562 (714)
+ +.+++.+|.++..+|++++|+..|+++++..|++..+...+..+....+
T Consensus 72 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l~~ 124 (129)
T 2xev_A 72 HDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSIRL 124 (129)
T ss_dssp STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHC-
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHh
Confidence 9 8999999999999999999999999999999999877766655554433
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.36 E-value=2.9e-11 Score=130.56 Aligned_cols=211 Identities=8% Similarity=-0.001 Sum_probs=144.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----------------HHHHHHHHHHHHCCCHHHHHHHHHHHHh
Q 005108 242 AEELKRMGNELYRKGCFGEALSMYDKAISLAPRNA-----------------AFRSNRAAALTGLGRIGEAVKECEEAVR 304 (714)
Q Consensus 242 ~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~-----------------~~~~~la~~~~~~g~~~~A~~~~~~al~ 304 (714)
|......|..+...|+|++|++.|.++++..|... .++..+|.+|..+|++++|++++.+++.
T Consensus 4 p~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~ 83 (434)
T 4b4t_Q 4 PGSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTE 83 (434)
T ss_dssp TTHHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34567788899999999999999999999887652 3466677777777777777777776665
Q ss_pred cCCCcH------HHHHHHHHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHH
Q 005108 305 LDPNYW------RAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAI 378 (714)
Q Consensus 305 ~~p~~~------~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al 378 (714)
..+... .+...++.++...|++++|+.++ ++++
T Consensus 84 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~-----------------------------------------~~~~ 122 (434)
T 4b4t_Q 84 YMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVC-----------------------------------------EKSI 122 (434)
T ss_dssp HHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHH-----------------------------------------HHHH
T ss_pred HHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHH-----------------------------------------HHHH
Confidence 433321 12333444444445555555444 4444
Q ss_pred HcCC-----CCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHH
Q 005108 379 AAGA-----DFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENA 453 (714)
Q Consensus 379 ~~~p-----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 453 (714)
.... .....++..+|.+|...|++++|+.++++++....... +......++..++.+|...|++++|
T Consensus 123 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~A 194 (434)
T 4b4t_Q 123 EFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLD--------DKPSLVDVHLLESKVYHKLRNLAKS 194 (434)
T ss_dssp HHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSS--------CSTHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcc--------cchhHHHHHHHHHHHHHHhCcHHHH
Confidence 3311 11245667799999999999999999998875433220 1113467899999999999999999
Q ss_pred HHHHHHHhccCC---CCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhcc
Q 005108 454 VTAAEKAGQIDP---RNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRF 509 (714)
Q Consensus 454 ~~~~~~al~~~p---~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~ 509 (714)
..++++++.+.+ ........ .+...|..+...++|++|..+|.++++.
T Consensus 195 ~~~~~~al~~~~~~~~~~~~~~~--------~~~~~g~~~~~~~~y~~A~~~~~~a~~~ 245 (434)
T 4b4t_Q 195 KASLTAARTAANSIYCPTQTVAE--------LDLMSGILHCEDKDYKTAFSYFFESFES 245 (434)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHH--------HHHHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCCchHHHHH--------HHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 999999986543 22222111 1224589999999999999999999874
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.35 E-value=2e-12 Score=116.03 Aligned_cols=92 Identities=20% Similarity=0.227 Sum_probs=84.4
Q ss_pred HHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcC----------HHHHHHHHHHhhccCCCCH
Q 005108 445 MALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSER----------FTEACQAYGEGLRFDPSNS 514 (714)
Q Consensus 445 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~----------~~~A~~~~~~al~~~p~~~ 514 (714)
.+.++|++|++.++++++++|++.++|..+ |.++...++ +++|+..|+++|+++|++.
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~------------G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~ 80 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRW------------GGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKD 80 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHH------------HHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHH------------HHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcH
Confidence 456789999999999999999999999877 777877766 4699999999999999999
Q ss_pred HHHHHHHHHHHHhC-----------CHHHHHHHHHHHHHhCCCCH
Q 005108 515 VLYCNRAACWFKLG-----------QWERSVEDSNQALLIQPNYT 548 (714)
Q Consensus 515 ~~~~~la~~~~~~g-----------~~~~A~~~~~~al~~~p~~~ 548 (714)
.+|+++|.+|..+| ++++|+++|++|++++|++.
T Consensus 81 ~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 81 EAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence 99999999999885 89999999999999999975
|
| >1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A | Back alignment and structure |
|---|
Probab=99.34 E-value=1.7e-12 Score=127.13 Aligned_cols=94 Identities=19% Similarity=0.118 Sum_probs=83.8
Q ss_pred hHHhhhccCCCce-EEEeecCCCccccccchHHHHHHhhCC-----CcEEEEEecccCcchhhhCCccccceEEEEeCCe
Q 005108 619 EQFRAAVSLPGVS-VVHFKSASNLHCKQISPYVETLCGRYP-----SINFLKVDIDESPGVAHAENVRIVPTFKIYKNGS 692 (714)
Q Consensus 619 e~~~~~i~~~~~~-vv~f~a~~c~~C~~~~p~l~~l~~~~~-----~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~ 692 (714)
+.+..+....+.+ ++.||++||++|+.+.|.++++..+++ ++.|+.||+++.+++++.|+|.++||+++|++|+
T Consensus 124 ~~~~~~~~~~~~~~~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~G~ 203 (226)
T 1a8l_A 124 ETKQAIRNIDQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEYPEWADQYNVMAVPKIVIQVNGE 203 (226)
T ss_dssp HHHHHHTTCCSCEEEEEEECSSCTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEEGGGCHHHHHHTTCCSSCEEEEEETTE
T ss_pred HHHHHHHhcCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcccccCCcEEEEEEEcccCHHHHHhCCCcccCeEEEEeCCc
Confidence 3444444455566 999999999999999999999999886 7999999999999999999999999999999999
Q ss_pred EEEEEcCC-CHHHHHHHHhhh
Q 005108 693 RMKEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 693 ~~~~~~g~-~~~~l~~~~~~~ 712 (714)
.+.++.|. +.+.|.++|+++
T Consensus 204 ~~~~~~G~~~~~~l~~~l~~~ 224 (226)
T 1a8l_A 204 DRVEFEGAYPEKMFLEKLLSA 224 (226)
T ss_dssp EEEEEESCCCHHHHHHHHHHH
T ss_pred eeEEEcCCCCHHHHHHHHHHh
Confidence 99999999 999999999875
|
| >2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.34 E-value=5.3e-13 Score=118.84 Aligned_cols=94 Identities=19% Similarity=0.251 Sum_probs=80.9
Q ss_pred hHHhhhcc-CCCceEEEeecCCCccccccchHHHHHHhhCC---CcEEEEEecccCcchhhhCCccccceEEEEeCCeEE
Q 005108 619 EQFRAAVS-LPGVSVVHFKSASNLHCKQISPYVETLCGRYP---SINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRM 694 (714)
Q Consensus 619 e~~~~~i~-~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~---~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~ 694 (714)
+.|...+. ...+++|+||++||++|+.+.|.++++..++. ++.|+.||+++.+.+++.|+|.++||+++|++|..+
T Consensus 15 ~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~ 94 (133)
T 2dj3_A 15 KTFDAIVMDPKKDVLIEFYAPWCGHCKQLEPIYTSLGKKYKGQKDLVIAKMDATANDITNDQYKVEGFPTIYFAPSGDKK 94 (133)
T ss_dssp TTCCCCCTCTTSEEEEEECCTTCSHHHHHHHHHHHHHHHHTTSSSEEEEEECTTTSCCCCSSCCCSSSSEEEEECTTCTT
T ss_pred CCHHHHhccCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCCEEEEEecCCcCHHHHhhcCCCcCCEEEEEeCCCcc
Confidence 55666554 36799999999999999999999999999885 599999999999999999999999999999888755
Q ss_pred E--EEc-CC-CHHHHHHHHhhh
Q 005108 695 K--EIV-CP-SRDMLEHSVRHY 712 (714)
Q Consensus 695 ~--~~~-g~-~~~~l~~~~~~~ 712 (714)
. ++. |. +.+.|.++|+++
T Consensus 95 ~~~~~~gg~~~~~~l~~~l~~~ 116 (133)
T 2dj3_A 95 NPIKFEGGNRDLEHLSKFIDEH 116 (133)
T ss_dssp SCEECCSSCCSTTHHHHHHHHH
T ss_pred cceEecCCCcCHHHHHHHHHHh
Confidence 4 455 64 899999999875
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=99.34 E-value=9.7e-12 Score=109.18 Aligned_cols=117 Identities=15% Similarity=0.200 Sum_probs=107.6
Q ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCC
Q 005108 434 AYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSN 513 (714)
Q Consensus 434 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~ 513 (714)
+..++.+|.++...|++++|+.+|++++..+|.+..++..+ |.++...|++++|+.+|+++++..|.+
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l------------a~~~~~~~~~~~A~~~~~~~~~~~~~~ 71 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQ------------AAVYFEKGDYNKCRELCEKAIEVGREN 71 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH------------HHHHHHHTCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHH------------HHHHHHhccHHHHHHHHHHHHhhcccc
Confidence 56789999999999999999999999999999998888766 999999999999999999999998877
Q ss_pred -------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcc
Q 005108 514 -------SVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEK 563 (714)
Q Consensus 514 -------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 563 (714)
..+++.+|.++...|++++|+++|++++++.| +...+..++.++..+++
T Consensus 72 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~ 127 (131)
T 1elr_A 72 REDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILKE 127 (131)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999 58888888888766554
|
| >2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A | Back alignment and structure |
|---|
Probab=99.34 E-value=1.1e-12 Score=114.63 Aligned_cols=92 Identities=21% Similarity=0.314 Sum_probs=79.6
Q ss_pred hhHHhhhc-cCCCceEEEeecCCCccccccchHHHHHHhhCC------CcEEEEEecccCcchhhhCCccccceEEEEeC
Q 005108 618 LEQFRAAV-SLPGVSVVHFKSASNLHCKQISPYVETLCGRYP------SINFLKVDIDESPGVAHAENVRIVPTFKIYKN 690 (714)
Q Consensus 618 ~e~~~~~i-~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~------~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~ 690 (714)
.+.|...+ ...++++|+||++||++|+.+.|.++++..+++ ++.|+.||+++.+ +++ +|.++||+++|++
T Consensus 14 ~~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~vd~~~~~-~~~--~v~~~Pt~~~~~~ 90 (121)
T 2djj_A 14 AKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATAND-VPD--EIQGFPTIKLYPA 90 (121)
T ss_dssp TTTTTTSSSCTTSCEEEEEECSSCTTHHHHHHHHHHHHHHHTTSSCTTSSEEEEEETTTSC-CSS--CCSSSSEEEEECS
T ss_pred ccCHHHHhhcCCCCEEEEEECCCCHhHHHhhHHHHHHHHHHhhcccCCceEEEEEECcccc-ccc--ccCcCCeEEEEeC
Confidence 35666664 567799999999999999999999999999886 4899999999876 665 9999999999988
Q ss_pred CeE--EEEEcCC-CHHHHHHHHhhh
Q 005108 691 GSR--MKEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 691 G~~--~~~~~g~-~~~~l~~~~~~~ 712 (714)
|.. +.++.|. +.+.|.++|+++
T Consensus 91 ~~~~~~~~~~G~~~~~~l~~~i~~~ 115 (121)
T 2djj_A 91 GAKGQPVTYSGSRTVEDLIKFIAEN 115 (121)
T ss_dssp SCTTSCCCCCCCSCHHHHHHHHHHT
T ss_pred cCCCCceEecCCCCHHHHHHHHHhc
Confidence 755 7788898 999999999875
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.34 E-value=4.8e-12 Score=107.82 Aligned_cols=101 Identities=21% Similarity=0.246 Sum_probs=96.7
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC--cHHHHHH
Q 005108 238 CGGDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPN--YWRAHQR 315 (714)
Q Consensus 238 ~p~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~a~~~ 315 (714)
+|+++..++.+|..++..|++++|+.+|+++++.+|.+..+++.+|.++..+|++++|+..|+++++.+|. +..++..
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 81 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA 81 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHH
Confidence 56677778889999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred HHHHHHHc-CCHHHHHHHHHhhcC
Q 005108 316 LGSLLVRL-GQVENARRHLCLSGQ 338 (714)
Q Consensus 316 la~~~~~~-g~~~~A~~~~~~al~ 338 (714)
+|.++..+ |++++|+++|++++.
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGG
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhh
Confidence 99999999 999999999999886
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=99.33 E-value=6.8e-12 Score=119.93 Aligned_cols=169 Identities=12% Similarity=0.036 Sum_probs=119.1
Q ss_pred HHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh------cCCCcHHHHHHHHHHHHHcC
Q 005108 252 LYRKGCFGEALSMYDKAISLAP-RNAAFRSNRAAALTGLGRIGEAVKECEEAVR------LDPNYWRAHQRLGSLLVRLG 324 (714)
Q Consensus 252 ~~~~g~~~~Al~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~------~~p~~~~a~~~la~~~~~~g 324 (714)
++..|++++|++.++.... +| ....++..+|.++...|++++|+..|+++++ ..+....++..+|.++...|
T Consensus 2 ~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 80 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAG 80 (203)
T ss_dssp -----CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred ccccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC
Confidence 4578999999996655544 44 5688899999999999999999999999988 34445778888888888888
Q ss_pred CHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Q 005108 325 QVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLED 404 (714)
Q Consensus 325 ~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~ 404 (714)
++++|+.+|++++.. +...++ ++......+..+|.++...|++++
T Consensus 81 ~~~~A~~~~~~al~~---------------------~~~~~~--------------~~~~~~~~~~~lg~~~~~~g~~~~ 125 (203)
T 3gw4_A 81 NWDAARRCFLEEREL---------------------LASLPE--------------DPLAASANAYEVATVALHFGDLAG 125 (203)
T ss_dssp CHHHHHHHHHHHHHH---------------------HHHSCC--------------CHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred CHHHHHHHHHHHHHH---------------------HHHcCc--------------cHHHHHHHHHHHHHHHHHhCCHHH
Confidence 888888888776420 000010 000113345568888888888888
Q ss_pred HHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccC
Q 005108 405 AESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQID 464 (714)
Q Consensus 405 A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 464 (714)
|+.++++++++.+.. ........++..+|.++...|++++|+.++++++++.
T Consensus 126 A~~~~~~al~~~~~~--------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 177 (203)
T 3gw4_A 126 ARQEYEKSLVYAQQA--------DDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIF 177 (203)
T ss_dssp HHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc--------cchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 888888887653322 1112235667899999999999999999999998753
|
| >2djk_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp2_A | Back alignment and structure |
|---|
Probab=99.33 E-value=2.1e-12 Score=114.75 Aligned_cols=93 Identities=16% Similarity=0.156 Sum_probs=82.4
Q ss_pred hhHHhhhccCCCceEEEeecCCCccccccchHHHHHHhhCCC-cEEEEEecccCcchhhhCCccc--cceEEEEeC--Ce
Q 005108 618 LEQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYPS-INFLKVDIDESPGVAHAENVRI--VPTFKIYKN--GS 692 (714)
Q Consensus 618 ~e~~~~~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~-~~~~~vd~d~~~~l~~~~~v~~--~Pt~~~~~~--G~ 692 (714)
.+.|...+..+.+++++||++ |++|+++.|.+++++.+|.+ +.|++||+|+.+.+++.|||++ +||++++++ |+
T Consensus 13 ~~~f~~~~~~~~pv~v~f~a~-~~~c~~~~p~l~~~A~~~~gk~~f~~vd~d~~~~~a~~~gi~~~~iPtl~i~~~~~g~ 91 (133)
T 2djk_A 13 PETYSDYMSAGIPLAYIFAET-AEERKELSDKLKPIAEAQRGVINFGTIDAKAFGAHAGNLNLKTDKFPAFAIQEVAKNQ 91 (133)
T ss_dssp HHHHHHHHHTTSCEEEEECSC-SSSHHHHHHHHHHHHHSSTTTSEEEEECTTTTGGGTTTTTCCSSSSSEEEEECTTTCC
T ss_pred hHHHHHHhcCCCCEEEEEecC-hhhHHHHHHHHHHHHHHhCCeEEEEEEchHHhHHHHHHcCCCcccCCEEEEEecCcCc
Confidence 356666666677899999999 89999999999999999964 9999999999999999999999 999999987 77
Q ss_pred EEEEEc--CC-CHHHHHHHHhhh
Q 005108 693 RMKEIV--CP-SRDMLEHSVRHY 712 (714)
Q Consensus 693 ~~~~~~--g~-~~~~l~~~~~~~ 712 (714)
. .++. |. +.+.|+++|+++
T Consensus 92 ~-~~~~~~g~~~~~~l~~fi~~~ 113 (133)
T 2djk_A 92 K-FPFDQEKEITFEAIKAFVDDF 113 (133)
T ss_dssp B-CCCCSSSCCCHHHHHHHHHHH
T ss_pred c-cCCCCccccCHHHHHHHHHHH
Confidence 6 5766 88 999999999875
|
| >2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct} | Back alignment and structure |
|---|
Probab=99.01 E-value=1.2e-13 Score=117.39 Aligned_cols=89 Identities=25% Similarity=0.487 Sum_probs=81.4
Q ss_pred hccCCCceEEEeecCCCccccccchHHHHHHhhCC-CcEEEEEecccCcchhhhCCccccceEEEEeCCeEEEEEcCC-C
Q 005108 624 AVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYP-SINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKEIVCP-S 701 (714)
Q Consensus 624 ~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~-~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~~~~g~-~ 701 (714)
++...+++++.||++||+.|+.+.|.++++..+++ ++.|+.+|+++.+++++.|+|.++||+++|++|+.+.++.|. +
T Consensus 15 ~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~ 94 (106)
T 2yj7_A 15 VLKSDKPVLVDFWAPWCGPCRMIAPIIEELAKEYEGKVKVVKVNVDENPNTAAQYGIRSIPTLLLFKNGQVVDRLVGAQP 94 (106)
Confidence 33556789999999999999999999999999987 599999999999999999999999999999999999999999 8
Q ss_pred HHHHHHHHhhh
Q 005108 702 RDMLEHSVRHY 712 (714)
Q Consensus 702 ~~~l~~~~~~~ 712 (714)
.+.|.++|+++
T Consensus 95 ~~~l~~~l~~~ 105 (106)
T 2yj7_A 95 KEALKERIDKH 105 (106)
Confidence 89999988764
|
| >1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.47.1.1 PDB: 3lef_A | Back alignment and structure |
|---|
Probab=99.32 E-value=7.6e-13 Score=121.79 Aligned_cols=82 Identities=6% Similarity=-0.025 Sum_probs=69.9
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCcchhhhCC---ccccceEEEEeC-CeEEEEEcCCCHH
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAHAEN---VRIVPTFKIYKN-GSRMKEIVCPSRD 703 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~l~~~~~---v~~~Pt~~~~~~-G~~~~~~~g~~~~ 703 (714)
.++++++||++||++|+.+.|.|+++...++++.|+.||+|++++++..|. |+++||+++|++ |+++.++.+.. +
T Consensus 54 ~k~vvv~F~A~WC~pC~~~~P~l~~l~~~~~~v~~~~v~~d~~~~~~~~~~~~~v~~iPt~i~~~~~G~~~~~~g~~p-~ 132 (167)
T 1z6n_A 54 RRYRLLVAGEMWCPDCQINLAALDFAQRLQPNIELAIISKGRAEDDLRQRLALERIAIPLVLVLDEEFNLLGRFVERP-Q 132 (167)
T ss_dssp SCEEEEEECCTTCHHHHHHHHHHHHHHHHCTTEEEEEECHHHHHHHTTTTTTCSSCCSSEEEEECTTCCEEEEEESSC-H
T ss_pred CCEEEEEEECCCChhHHHHHHHHHHHHHHCCCcEEEEEECCCCHHHHHHHHHcCCCCcCeEEEECCCCCEEEEEcCCC-H
Confidence 458899999999999999999999999999999999999999999999997 999999999977 58887774434 3
Q ss_pred HHHHHHh
Q 005108 704 MLEHSVR 710 (714)
Q Consensus 704 ~l~~~~~ 710 (714)
.++..|.
T Consensus 133 ~~~~~i~ 139 (167)
T 1z6n_A 133 AVLDGGP 139 (167)
T ss_dssp HHHHHCH
T ss_pred HHHHhHH
Confidence 3444443
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.31 E-value=9.3e-12 Score=113.66 Aligned_cols=143 Identities=17% Similarity=0.112 Sum_probs=116.7
Q ss_pred hhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCC
Q 005108 432 SEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDP 511 (714)
Q Consensus 432 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p 511 (714)
..+.++..+|.++...|++++|+.++++++++.+....... ....+..+|.++...|++++|+.+|++++++.+
T Consensus 7 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 80 (164)
T 3ro3_A 7 AQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAA------ERIAYSNLGNAYIFLGEFETASEYYKKTLLLAR 80 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchH------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 34678999999999999999999999999987543221100 112233569999999999999999999998754
Q ss_pred CC------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Q 005108 512 SN------SVLYCNRAACWFKLGQWERSVEDSNQALLIQP------NYTKALLRRAASNSKLEKWADAVRDFEVLRRELP 579 (714)
Q Consensus 512 ~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p 579 (714)
.. ..++.++|.++...|++++|++++++++++.+ ....++..+|.++..+|++++|++++++++++..
T Consensus 81 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 81 QLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 160 (164)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 32 67899999999999999999999999998632 2246789999999999999999999999998754
Q ss_pred C
Q 005108 580 D 580 (714)
Q Consensus 580 ~ 580 (714)
.
T Consensus 161 ~ 161 (164)
T 3ro3_A 161 E 161 (164)
T ss_dssp T
T ss_pred H
Confidence 4
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.31 E-value=2.9e-12 Score=133.77 Aligned_cols=113 Identities=29% Similarity=0.418 Sum_probs=89.3
Q ss_pred HHHHhHHhhCcCHHHHHHHHHHhhccCCCCH-----------------HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Q 005108 484 RARGNDLFKSERFTEACQAYGEGLRFDPSNS-----------------VLYCNRAACWFKLGQWERSVEDSNQALLIQPN 546 (714)
Q Consensus 484 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~-----------------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 546 (714)
+.+|..++..|+|++|+.+|++++++.|++. .+|+++|.+|.++|+|++|+.+|+++++++|+
T Consensus 183 ~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 262 (338)
T 2if4_A 183 KMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEK 262 (338)
T ss_dssp HHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 3459999999999999999999999999876 48999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Q 005108 547 YTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAESLFHAQVSLK 596 (714)
Q Consensus 547 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~L~~~~~~l~ 596 (714)
+..+|+++|.+|..+|++++|+.+|+++++++|++..++..|..+....+
T Consensus 263 ~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~ 312 (338)
T 2if4_A 263 NPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEK 312 (338)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998887755443
|
| >3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A | Back alignment and structure |
|---|
Probab=99.29 E-value=2.9e-12 Score=126.91 Aligned_cols=95 Identities=23% Similarity=0.301 Sum_probs=85.3
Q ss_pred hhhHHhhhccCCCceEEEeecCCCccccccchHHHHHHhhCCC----cEEEEEecccCcchhhhCCccccceEEEEeCCe
Q 005108 617 SLEQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYPS----INFLKVDIDESPGVAHAENVRIVPTFKIYKNGS 692 (714)
Q Consensus 617 ~~e~~~~~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~----~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~ 692 (714)
+.+.|...+...++++|+||++||++|+.+.|.++++..++.+ +.|+.||+++..++++.|+|.++||+++|++|+
T Consensus 21 ~~~~~~~~~~~~~~v~v~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~g~ 100 (241)
T 3idv_A 21 NDANFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVAKIDATSASVLASRFDVSGYPTIKILKKGQ 100 (241)
T ss_dssp CTTTHHHHHTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHHHTSSSCCCEEEEETTTCHHHHHHTTCCSSSEEEEEETTE
T ss_pred cccCHHHHHhcCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhhcCCceEEEEEeccCCHHHHHhcCCCcCCEEEEEcCCC
Confidence 3467777887788999999999999999999999999987743 899999999999999999999999999999999
Q ss_pred EEEEEcCC-CHHHHHHHHhhh
Q 005108 693 RMKEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 693 ~~~~~~g~-~~~~l~~~~~~~ 712 (714)
.+ ++.|. +.+.|.++|+++
T Consensus 101 ~~-~~~g~~~~~~l~~~i~~~ 120 (241)
T 3idv_A 101 AV-DYEGSRTQEEIVAKVREV 120 (241)
T ss_dssp EE-ECCSCSCHHHHHHHHHHH
T ss_pred cc-cccCcccHHHHHHHHhhc
Confidence 88 57777 999999999874
|
| >2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea} | Back alignment and structure |
|---|
Probab=99.29 E-value=2.1e-12 Score=107.95 Aligned_cols=77 Identities=13% Similarity=0.173 Sum_probs=69.8
Q ss_pred ceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCcchhhhCCccccceEEEEeCCeEEEEEcCC-CHHHHHHH
Q 005108 630 VSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKEIVCP-SRDMLEHS 708 (714)
Q Consensus 630 ~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~~~~g~-~~~~l~~~ 708 (714)
..++.||++||++|+++.|.|+++..++. +.|.+||++++++++..|+++ +|++++++||+.+. .|+ +.++|+++
T Consensus 30 ~~vv~y~~~~C~~C~~a~~~L~~l~~e~~-i~~~~vDId~d~~l~~~ygv~-VP~l~~~~dG~~v~--~g~~~~~~L~~~ 105 (107)
T 2fgx_A 30 RKLVVYGREGCHLCEEMIASLRVLQKKSW-FELEVINIDGNEHLTRLYNDR-VPVLFAVNEDKELC--HYFLDSDVIGAY 105 (107)
T ss_dssp CCEEEEECSSCHHHHHHHHHHHHHHHHSC-CCCEEEETTTCHHHHHHSTTS-CSEEEETTTTEEEE--CSSCCCHHHHHH
T ss_pred cEEEEEeCCCChhHHHHHHHHHHHHHhcC-CeEEEEECCCCHHHHHHhCCC-CceEEEEECCEEEE--ecCCCHHHHHHH
Confidence 56899999999999999999999998875 899999999999999999997 99999999999873 465 99999988
Q ss_pred Hh
Q 005108 709 VR 710 (714)
Q Consensus 709 ~~ 710 (714)
|.
T Consensus 106 L~ 107 (107)
T 2fgx_A 106 LS 107 (107)
T ss_dssp HC
T ss_pred hC
Confidence 73
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.28 E-value=3.2e-12 Score=110.88 Aligned_cols=95 Identities=21% Similarity=0.184 Sum_probs=83.3
Q ss_pred HhCcHHHHHHHHHHHhcc---CCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHH
Q 005108 446 ALGRFENAVTAAEKAGQI---DPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAA 522 (714)
Q Consensus 446 ~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 522 (714)
.+|++++|+.+|++++++ +|++..++..+ |.++...|++++|+.+|+++++++|+++.+++++|.
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~l------------g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 69 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGL------------GSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAM 69 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 468999999999999999 47666666655 999999999999999999999999999999999999
Q ss_pred HHHHhCCHHHHHHHHHHHHHhCCCCHHHHH
Q 005108 523 CWFKLGQWERSVEDSNQALLIQPNYTKALL 552 (714)
Q Consensus 523 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 552 (714)
++..+|++++|+..|+++++..|+++.+..
T Consensus 70 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 99 (117)
T 3k9i_A 70 VLYNLGRYEQGVELLLKIIAETSDDETIQS 99 (117)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHCCCHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHH
Confidence 999999999999999999999999987653
|
| >1ttz_A Conserved hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative; 2.11A {Xanthomonas campestris} SCOP: c.47.1.1 PDB: 1xpv_A | Back alignment and structure |
|---|
Probab=99.28 E-value=1.9e-12 Score=104.63 Aligned_cols=73 Identities=18% Similarity=0.271 Sum_probs=65.5
Q ss_pred eEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCcchhhhCCccccceEEEEeCCeEEEEEcCC-CHHHHHHHH
Q 005108 631 SVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKEIVCP-SRDMLEHSV 709 (714)
Q Consensus 631 ~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~~~~g~-~~~~l~~~~ 709 (714)
.++.||++||++|+++.|.|+++..++ |.+||++++++++.+|+++ +||+++ +||+.+. |+ +.++|+++|
T Consensus 2 ~vv~f~a~~C~~C~~~~~~L~~~~~~~----~~~vdid~~~~l~~~~g~~-vPtl~~-~~G~~v~---g~~~~~~L~~~l 72 (87)
T 1ttz_A 2 ALTLYQRDDCHLCDQAVEALAQARAGA----FFSVFIDDDAALESAYGLR-VPVLRD-PMGRELD---WPFDAPRLRAWL 72 (87)
T ss_dssp CEEEEECSSCHHHHHHHHHHHHTTCCC----EEEEECTTCHHHHHHHTTT-CSEEEC-TTCCEEE---SCCCHHHHHHHH
T ss_pred EEEEEECCCCchHHHHHHHHHHHHHhh----eEEEECCCCHHHHHHhCCC-cCeEEE-ECCEEEe---CCCCHHHHHHHH
Confidence 378999999999999999999887654 7899999999999999998 999998 9999985 65 999999999
Q ss_pred hhh
Q 005108 710 RHY 712 (714)
Q Consensus 710 ~~~ 712 (714)
+++
T Consensus 73 ~~~ 75 (87)
T 1ttz_A 73 DAA 75 (87)
T ss_dssp HTC
T ss_pred HHH
Confidence 864
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.26 E-value=3.4e-11 Score=130.11 Aligned_cols=204 Identities=9% Similarity=0.018 Sum_probs=161.2
Q ss_pred HHHhHHHHHcCCHHHHHHHHHHHHHcCCCCC----------------HHHHHHHHHHHHHcCCHHHHHHHhhccccCCCC
Q 005108 355 LSKCTDARKVGDWKSALREGDAAIAAGADFS----------------PQLSMCRVEALLKLHQLEDAESSLSNIPKIEPS 418 (714)
Q Consensus 355 ~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~----------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 418 (714)
+..+..+...|+|++|++.|.++++..+... ...+..+|.+|...|++++|++++.++++..+.
T Consensus 8 l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~ 87 (434)
T 4b4t_Q 8 LEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQ 87 (434)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 4455667889999999999999999877532 234667999999999999999999999876554
Q ss_pred CCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCC------HHHHHHHHhHHHHHHHHHHHhHHhh
Q 005108 419 TVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRN------VEVAVLLNNVKLVARARARGNDLFK 492 (714)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~l~~~~~~~~~g~~~~~ 492 (714)
.. .......+...++.++...|++++|+.++++++...+.. ..++. .+|.++..
T Consensus 88 ~~--------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~------------~la~~~~~ 147 (434)
T 4b4t_Q 88 FA--------KSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSI------------KLATLHYQ 147 (434)
T ss_dssp SC--------HHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHH------------HHHHHHHH
T ss_pred cc--------chHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHH------------HHHHHHHH
Confidence 31 111223456778888888999999999999998653221 22222 45999999
Q ss_pred CcCHHHHHHHHHHhhcc------CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC---CCC----HHHHHHHHHHHH
Q 005108 493 SERFTEACQAYGEGLRF------DPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQ---PNY----TKALLRRAASNS 559 (714)
Q Consensus 493 ~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~~----~~~~~~la~~~~ 559 (714)
.|+|++|+.++++++.. .+....++..++.+|..+|++++|...|++++.+. ++. ...+..+|.++.
T Consensus 148 ~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~ 227 (434)
T 4b4t_Q 148 KKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHC 227 (434)
T ss_dssp HTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTT
T ss_pred ccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHH
Confidence 99999999999998865 23346899999999999999999999999998763 222 356778889999
Q ss_pred HhccHHHHHHHHHHHHHhC
Q 005108 560 KLEKWADAVRDFEVLRREL 578 (714)
Q Consensus 560 ~~g~~~eA~~~~~~al~~~ 578 (714)
..++|++|..+|.++++..
T Consensus 228 ~~~~y~~A~~~~~~a~~~~ 246 (434)
T 4b4t_Q 228 EDKDYKTAFSYFFESFESY 246 (434)
T ss_dssp SSSCHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHh
Confidence 9999999999999998753
|
| >3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.25 E-value=1e-11 Score=126.40 Aligned_cols=96 Identities=16% Similarity=0.197 Sum_probs=84.0
Q ss_pred hhhHHhhhc-cCCCceEEEeecCCCccccccchHHHHHHhhCCC-cEEEEEecc--cCcchhhhCCccccceEEEEeCCe
Q 005108 617 SLEQFRAAV-SLPGVSVVHFKSASNLHCKQISPYVETLCGRYPS-INFLKVDID--ESPGVAHAENVRIVPTFKIYKNGS 692 (714)
Q Consensus 617 ~~e~~~~~i-~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~-~~~~~vd~d--~~~~l~~~~~v~~~Pt~~~~~~G~ 692 (714)
+.+.|...+ ....+++|+||++||++|+.+.|.++++..++++ +.++.||+| +..++++.|+|.++||+++|++|+
T Consensus 23 t~~~f~~~i~~~~~~vlV~F~A~wC~~C~~~~p~~~~la~~~~~~~~~~~v~~d~~~~~~l~~~~~I~~~Pt~~~~~~g~ 102 (298)
T 3ed3_A 23 TPKSFDKAIHNTNYTSLVEFYAPWCGHCKKLSSTFRKAAKRLDGVVQVAAVNCDLNKNKALCAKYDVNGFPTLMVFRPPK 102 (298)
T ss_dssp CHHHHHHHHTSSSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTSTTTHHHHHHTTCCBSSEEEEEECCC
T ss_pred CHHHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHccCCcEEEEEEccCccCHHHHHhCCCCccceEEEEECCc
Confidence 346777777 4467899999999999999999999999999976 889999998 688999999999999999999997
Q ss_pred -----------------EEEEEcCC-CHHHHHHHHhhh
Q 005108 693 -----------------RMKEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 693 -----------------~~~~~~g~-~~~~l~~~~~~~ 712 (714)
.+.++.|. +.+.|.++|.+.
T Consensus 103 ~v~~~~g~~~~~~~~~~~~~~y~G~r~~~~i~~fl~~~ 140 (298)
T 3ed3_A 103 IDLSKPIDNAKKSFSAHANEVYSGARTLAPIVDFSLSR 140 (298)
T ss_dssp C-------------CCCEEEECCSCCSHHHHHHHHHTT
T ss_pred eeecccccccccccccccceeecCCcCHHHHHHHHHHh
Confidence 36677888 999999998764
|
| >2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.90 E-value=5.6e-13 Score=118.16 Aligned_cols=93 Identities=19% Similarity=0.265 Sum_probs=80.1
Q ss_pred HHhhhccCCCceEEEeecCCCccccccchHH---HHHHhhCCC-cEEEEEec--ccCcchhhhCCccccceEEEE--eCC
Q 005108 620 QFRAAVSLPGVSVVHFKSASNLHCKQISPYV---ETLCGRYPS-INFLKVDI--DESPGVAHAENVRIVPTFKIY--KNG 691 (714)
Q Consensus 620 ~~~~~i~~~~~~vv~f~a~~c~~C~~~~p~l---~~l~~~~~~-~~~~~vd~--d~~~~l~~~~~v~~~Pt~~~~--~~G 691 (714)
.+.......++++|+||++||++|+.+.|.+ +++...+.+ +.|+.||+ ++..++++.|+|.++||+++| ++|
T Consensus 11 ~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~v~~~Pt~~~~d~~~G 90 (130)
T 2lst_A 11 ALALAQAHGRMVMVYFHSEHCPYCQQMNTFVLSDPGVSRLLEARFVVASVSVDTPEGQELARRYRVPGTPTFVFLVPKAG 90 (130)
Confidence 3444445567899999999999999999999 888888765 88999999 467889999999999999999 789
Q ss_pred eE--EEEEcCC-CHHHHHHHHhhh
Q 005108 692 SR--MKEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 692 ~~--~~~~~g~-~~~~l~~~~~~~ 712 (714)
+. +.++.|. +.+.|.++|+++
T Consensus 91 ~~~~~~~~~G~~~~~~l~~~l~~~ 114 (130)
T 2lst_A 91 AWEEVGRLFGSRPRAEFLKELRQV 114 (130)
Confidence 99 8999999 888999988875
|
| >3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A | Back alignment and structure |
|---|
Probab=99.25 E-value=8.1e-12 Score=123.62 Aligned_cols=97 Identities=25% Similarity=0.346 Sum_probs=85.7
Q ss_pred hhhhHHhhhccCCCceEEEeecCCCccccccchHHHHHHhhC----CCcEEEEEecccCcchhhhCCccccceEEEEeCC
Q 005108 616 SSLEQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRY----PSINFLKVDIDESPGVAHAENVRIVPTFKIYKNG 691 (714)
Q Consensus 616 ~~~e~~~~~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~----~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G 691 (714)
.+.+.|...+....+++|+||++||++|+.+.|.+.++..++ +++.|++||+++.+++++.|+|.++||+++|++|
T Consensus 135 ~~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~g 214 (241)
T 3idv_A 135 LTKENFDEVVNDADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATAETDLAKRFDVSGYPTLKIFRKG 214 (241)
T ss_dssp CCTTTHHHHHHHCSEEEEEEECTTCTGGGGTHHHHHHHHHHHHTSSSCCCEEEEETTTCHHHHHHTTCCSSSEEEEEETT
T ss_pred ccHHHHHHhhccCCeEEEEEECCCCHHHHHhHHHHHHHHHHHhccCCcEEEEEEECCCCHHHHHHcCCcccCEEEEEECC
Confidence 344566777767789999999999999999999999998876 4499999999999999999999999999999999
Q ss_pred eEEEEEcCC-CHHHHHHHHhhhc
Q 005108 692 SRMKEIVCP-SRDMLEHSVRHYS 713 (714)
Q Consensus 692 ~~~~~~~g~-~~~~l~~~~~~~~ 713 (714)
+.+. +.|. +.+.|.++|.+..
T Consensus 215 ~~~~-~~g~~~~~~l~~~l~~~~ 236 (241)
T 3idv_A 215 RPYD-YNGPREKYGIVDYMIEQS 236 (241)
T ss_dssp EEEE-CCSCCSHHHHHHHHHHHT
T ss_pred eEEE-ecCCCCHHHHHHHHHhhh
Confidence 9887 7788 9999999998753
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=99.25 E-value=1.5e-11 Score=134.60 Aligned_cols=110 Identities=27% Similarity=0.515 Sum_probs=104.9
Q ss_pred HHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccH
Q 005108 485 ARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKW 564 (714)
Q Consensus 485 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 564 (714)
.+|..++..|++++|+++|+++++++|++..+|+++|.+|.++|++++|+++|+++++++|++..+++++|.+|..+|++
T Consensus 11 ~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 11 TQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 45888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005108 565 ADAVRDFEVLRRELPDDNEIAESLFHAQVS 594 (714)
Q Consensus 565 ~eA~~~~~~al~~~p~~~~~~~~L~~~~~~ 594 (714)
++|+++|+++++++|++..++..+..+...
T Consensus 91 ~eA~~~~~~al~~~p~~~~~~~~l~~~~~~ 120 (477)
T 1wao_1 91 RAALRDYETVVKVKPHDKDAKMKYQECNKI 120 (477)
T ss_dssp HHHHHHHHHHHHHSTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999888887333
|
| >2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.23 E-value=5.9e-12 Score=111.51 Aligned_cols=86 Identities=19% Similarity=0.194 Sum_probs=75.6
Q ss_pred CCCceEEEeecCCCccccccchHH---HHHHhhCC-CcEEEEEecc--cCcchhhhCCccccceEEEE-eCCeEEEEEcC
Q 005108 627 LPGVSVVHFKSASNLHCKQISPYV---ETLCGRYP-SINFLKVDID--ESPGVAHAENVRIVPTFKIY-KNGSRMKEIVC 699 (714)
Q Consensus 627 ~~~~~vv~f~a~~c~~C~~~~p~l---~~l~~~~~-~~~~~~vd~d--~~~~l~~~~~v~~~Pt~~~~-~~G~~~~~~~g 699 (714)
..++++|.||++||++|+.+.|.+ +.+...+. .+.++.||++ +...+++.|+|.++||+++| ++|+++.++.|
T Consensus 26 ~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~v~~~Pt~~~~d~~G~~~~~~~G 105 (130)
T 2kuc_A 26 EDKLLFVDCFTTWCGPCKRLSKVVFKDSLVADYFNRHFVNLKMDMEKGEGVELRKKYGVHAYPTLLFINSSGEVVYRLVG 105 (130)
T ss_dssp HSSCEEEEECCTTCTHHHHHHHHGGGCHHHHHHHHHHSEEEEECSSSTTHHHHHHHTTCCSSCEEEEECTTSCEEEEEES
T ss_pred cCCeEEEEEECCCCccHHHHHHHhcCcHHHHHHHhcCeEEEEEecCCcchHHHHHHcCCCCCCEEEEECCCCcEEEEecC
Confidence 467899999999999999999988 66655543 5889999998 47789999999999999999 89999999999
Q ss_pred C-CHHHHHHHHhhh
Q 005108 700 P-SRDMLEHSVRHY 712 (714)
Q Consensus 700 ~-~~~~l~~~~~~~ 712 (714)
. +.+.|.++|+++
T Consensus 106 ~~~~~~l~~~l~~~ 119 (130)
T 2kuc_A 106 AEDAPELLKKVKLG 119 (130)
T ss_dssp CCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 9 999999999875
|
| >3f9u_A Putative exported cytochrome C biogenesis-related; exported cytochrome C biogenesis-related protein, bacteroide fragilis; 2.20A {Bacteroides fragilis nctc 9343} | Back alignment and structure |
|---|
Probab=99.23 E-value=6e-12 Score=117.46 Aligned_cols=85 Identities=8% Similarity=0.190 Sum_probs=71.0
Q ss_pred cCCCceEEEeecCCCccccccc------hHHHHHHhhCCCcEEEEEecccCcch--------------------------
Q 005108 626 SLPGVSVVHFKSASNLHCKQIS------PYVETLCGRYPSINFLKVDIDESPGV-------------------------- 673 (714)
Q Consensus 626 ~~~~~~vv~f~a~~c~~C~~~~------p~l~~l~~~~~~~~~~~vd~d~~~~l-------------------------- 673 (714)
..+++++|+||++||++|+.+. |.+.+...+ ++.|+.||+++..++
T Consensus 45 ~~gk~vlv~F~A~WC~~C~~~~~~~~~~~~~~~~~~~--~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (172)
T 3f9u_A 45 QHNKPVMLDFTGYGCVNCRKMELAVWTDPKVSSIINN--DYVLITLYVDNKTPLTEPVKIMENGTERTLRTVGDKWSYLQ 122 (172)
T ss_dssp HTTCCEEEEEECTTCHHHHHHHHHTTTSHHHHHHHHH--HCEEEEEETTCCCEEEEEEEEEETTEEEEEEEHHHHHHHHH
T ss_pred HcCCeEEEEEECCCCHHHHHHHHHhcCCHHHHHHhcC--CEEEEEEecCcccccchhhhhhhcchhhhhhhhhhhhhHHH
Confidence 4577999999999999999983 444444333 589999999987766
Q ss_pred hhhCCccccceEEEE-eCCeEEEEEcCC-C-HHHHHHHHhhh
Q 005108 674 AHAENVRIVPTFKIY-KNGSRMKEIVCP-S-RDMLEHSVRHY 712 (714)
Q Consensus 674 ~~~~~v~~~Pt~~~~-~~G~~~~~~~g~-~-~~~l~~~~~~~ 712 (714)
+..|+|.++||+++| ++|+++.++.|. + .+++.++|++.
T Consensus 123 ~~~~~v~~~Pt~~lid~~G~~~~~~~G~~~~~~~l~~~l~~~ 164 (172)
T 3f9u_A 123 RVKFGANAQPFYVLIDNEGNPLNKSYAYDEDISKYINFLQTG 164 (172)
T ss_dssp HHHHSCCCSSEEEEECTTSCBSSCCBCSCCCHHHHHHHHHHH
T ss_pred HHHcCCCCcceEEEECCCCCEEeeccCCCCCHHHHHHHHHHH
Confidence 789999999999999 999999999999 6 88888887753
|
| >2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.22 E-value=8.8e-12 Score=132.22 Aligned_cols=94 Identities=22% Similarity=0.340 Sum_probs=84.5
Q ss_pred hHHhhhccCCCceEEEeecCCCccccccchHHHHHHhhCC-------CcEEEEEecccCcchhhhCCccccceEEEEeCC
Q 005108 619 EQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYP-------SINFLKVDIDESPGVAHAENVRIVPTFKIYKNG 691 (714)
Q Consensus 619 e~~~~~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~-------~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G 691 (714)
+.|..++...++++|.||++||++|+.+.|.++++...+. ++.|++||+++..++++.|+|.++||+++|++|
T Consensus 13 ~~f~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~v~~~~Vd~~~~~~l~~~~~v~~~Pt~~~f~~G 92 (382)
T 2r2j_A 13 ENIDEILNNADVALVNFYADWCRFSQMLHPIFEEASDVIKEEFPNENQVVFARVDCDQHSDIAQRYRISKYPTLKLFRNG 92 (382)
T ss_dssp TTHHHHHHHCSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTCC---CCEEEEEEETTTCHHHHHHTTCCEESEEEEEETT
T ss_pred HHHHHHHhcCCeEEEEEECCCCHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEEECCccHHHHHhcCCCcCCEEEEEeCC
Confidence 5666777677899999999999999999999999988762 389999999999999999999999999999999
Q ss_pred eEEEE-EcCC-CHHHHHHHHhhh
Q 005108 692 SRMKE-IVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 692 ~~~~~-~~g~-~~~~l~~~~~~~ 712 (714)
+.+.+ +.|. +.+.|.++|.+.
T Consensus 93 ~~~~~~~~G~~~~~~l~~~i~~~ 115 (382)
T 2r2j_A 93 MMMKREYRGQRSVKALADYIRQQ 115 (382)
T ss_dssp EEEEEECCSCCSHHHHHHHHHHH
T ss_pred cEeeeeecCcchHHHHHHHHHHh
Confidence 99884 8898 999999999874
|
| >1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A | Back alignment and structure |
|---|
Probab=99.22 E-value=2.5e-11 Score=127.22 Aligned_cols=94 Identities=14% Similarity=0.139 Sum_probs=84.2
Q ss_pred hhhHHhhhccCCCceEEEeecCCCccccccchH-------HHHHHhhCC--CcEEEEEecccCcchhhhCCccccceEEE
Q 005108 617 SLEQFRAAVSLPGVSVVHFKSASNLHCKQISPY-------VETLCGRYP--SINFLKVDIDESPGVAHAENVRIVPTFKI 687 (714)
Q Consensus 617 ~~e~~~~~i~~~~~~vv~f~a~~c~~C~~~~p~-------l~~l~~~~~--~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~ 687 (714)
+.+.|...+...++++|+|||+||+ |+.+.|. ++++...+. ++.|++||+++.++++++|+|+++||+++
T Consensus 17 ~~~~f~~~i~~~~~~lV~F~a~wC~-c~~~~p~~~~~~~~~~~~a~~~~~~~v~~~~Vd~~~~~~l~~~~~v~~~Pt~~~ 95 (350)
T 1sji_A 17 TEKNFKQVLKKYDVLCLYYHESVSS-DKVAQKQFQLKEIVLELVAQVLEHKDIGFVMVDAKKEAKLAKKLGFDEEGSLYV 95 (350)
T ss_dssp CHHHHHHHHTTCSEEEEEEECCSCS-SSTTSHHHHHHHHHHHHHHHHGGGSSEEEEEEETTTTHHHHHHHTCCSTTEEEE
T ss_pred CHHHHHHHHhhCCeEEEEEECCCCc-chhhCchhhhhhHHHHHHHHHHhhcCcEEEEEeCCCCHHHHHhcCCCccceEEE
Confidence 3467888887888999999999999 9999888 888887774 59999999999999999999999999999
Q ss_pred EeCCeEEEEEcCC-CHHHHHHHHhhh
Q 005108 688 YKNGSRMKEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 688 ~~~G~~~~~~~g~-~~~~l~~~~~~~ 712 (714)
|++|+ +.++.|. +.+.|.++|.+.
T Consensus 96 ~~~g~-~~~~~G~~~~~~l~~~i~~~ 120 (350)
T 1sji_A 96 LKGDR-TIEFDGEFAADVLVEFLLDL 120 (350)
T ss_dssp EETTE-EEEECSCCCHHHHHHHHHTT
T ss_pred EECCc-EEEecCCCCHHHHHHHHHHh
Confidence 99999 5688898 999999999874
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.22 E-value=1.5e-10 Score=99.74 Aligned_cols=101 Identities=15% Similarity=0.113 Sum_probs=90.3
Q ss_pred HHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 005108 497 TEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRR 576 (714)
Q Consensus 497 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~ 576 (714)
++|+..|+++++.+|+++.+++.+|.+|...|++++|+..|+++++++|++..+++.+|.+|..+|++++|+..|+++++
T Consensus 2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 36889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCC--CHHHHHHHHHHHHHhhh
Q 005108 577 ELPD--DNEIAESLFHAQVSLKK 597 (714)
Q Consensus 577 ~~p~--~~~~~~~L~~~~~~l~~ 597 (714)
+.|+ +......+......+++
T Consensus 82 ~~~~~~~~~~~~~l~~~l~~l~~ 104 (115)
T 2kat_A 82 AAQSRGDQQVVKELQVFLRRLAR 104 (115)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHH
T ss_pred hccccccHHHHHHHHHHHHHhcc
Confidence 9874 45555556555555544
|
| >3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.21 E-value=1.5e-11 Score=121.79 Aligned_cols=100 Identities=15% Similarity=0.206 Sum_probs=81.6
Q ss_pred eeeehhhhHHhhhc-cCCCceEEEeecCCCccccccchHHHHHHhhCC----CcEEEEEec--ccCcchhhhCCccccce
Q 005108 612 VEEVSSLEQFRAAV-SLPGVSVVHFKSASNLHCKQISPYVETLCGRYP----SINFLKVDI--DESPGVAHAENVRIVPT 684 (714)
Q Consensus 612 ~~~i~~~e~~~~~i-~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~----~~~~~~vd~--d~~~~l~~~~~v~~~Pt 684 (714)
+..+.. +.|...+ ...++++|+||++||++|+.+.|.++++..+++ .+.|+.||+ ++..++++.|+|.++||
T Consensus 14 v~~l~~-~~f~~~i~~~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~v~~~~vd~~~~~~~~l~~~~~v~~~Pt 92 (244)
T 3q6o_A 14 LTLLQA-DTVRGAVLGSRSAWAVEFFASWCGHCIAFAPTWXALAEDVKAWRPALYLAALDCAEETNSAVCRDFNIPGFPT 92 (244)
T ss_dssp SEEECT-TTHHHHHSSCSSEEEEEEECTTCHHHHHHHHHHHHHHHHTGGGTTTEEEEEEETTSTTTHHHHHHTTCCSSSE
T ss_pred ceeCCh-hhHHHHHhhCCCeEEEEEECCcCHHHHHHHHHHHHHHHHHHhccCcEEEEEEeCCchhhHHHHHHcCCCccCE
Confidence 333444 4555544 455899999999999999999999999999986 499999999 67899999999999999
Q ss_pred EEEEeCCeEEE-----EEcCCCHHHHHHHHhhh
Q 005108 685 FKIYKNGSRMK-----EIVCPSRDMLEHSVRHY 712 (714)
Q Consensus 685 ~~~~~~G~~~~-----~~~g~~~~~l~~~~~~~ 712 (714)
+++|++|+.+. ++.|.+.+.|+++|.++
T Consensus 93 ~~~~~~g~~~~~g~~~~~~g~~~~~l~~~i~~~ 125 (244)
T 3q6o_A 93 VRFFXAFTXNGSGAVFPVAGADVQTLRERLIDA 125 (244)
T ss_dssp EEEECTTCCSSSCEECCCTTCCHHHHHHHHHHH
T ss_pred EEEEeCCCcCCCCeeEecCCCCHHHHHHHHHHH
Confidence 99999854432 66677899999888764
|
| >3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A | Back alignment and structure |
|---|
Probab=99.21 E-value=1.5e-11 Score=134.96 Aligned_cols=95 Identities=22% Similarity=0.340 Sum_probs=88.0
Q ss_pred hhHHhhhccCC---CceEEEeecCCCccccccchHHHHHHhhCCC-cEEEEEecccCcchhhhCCccccceEEEEeCCeE
Q 005108 618 LEQFRAAVSLP---GVSVVHFKSASNLHCKQISPYVETLCGRYPS-INFLKVDIDESPGVAHAENVRIVPTFKIYKNGSR 693 (714)
Q Consensus 618 ~e~~~~~i~~~---~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~-~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~ 693 (714)
.+.|...+... ++++|.||++||++|+.+.|.++++...+.+ +.|+.||+++.+++++.|+|.++||+++|++|+.
T Consensus 8 ~~~f~~~i~~~~~~~~~lv~F~a~wC~~C~~~~p~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Ptl~~~~~g~~ 87 (481)
T 3f8u_A 8 DDNFESRISDTGSAGLMLVEFFAPWCGHAKRLAPEYEAAATRLKGIVPLAKVDCTANTNTCNKYGVSGYPTLKIFRDGEE 87 (481)
T ss_dssp TTTHHHHTTCCSSSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCCEEEEETTTCHHHHHHTTCCEESEEEEEETTEE
T ss_pred HHHHHHHHHhCCCCCeEEEEEECCCCHHHHHhHHHHHHHHHHhcCceEEEEEECCCCHHHHHhcCCCCCCEEEEEeCCce
Confidence 35677777666 8999999999999999999999999999976 9999999999999999999999999999999999
Q ss_pred EEEEcCC-CHHHHHHHHhhh
Q 005108 694 MKEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 694 ~~~~~g~-~~~~l~~~~~~~ 712 (714)
+.++.|. +.+.|.++|.+.
T Consensus 88 ~~~~~G~~~~~~l~~~~~~~ 107 (481)
T 3f8u_A 88 AGAYDGPRTADGIVSHLKKQ 107 (481)
T ss_dssp EEECCSCSSHHHHHHHHHHH
T ss_pred eeeecCccCHHHHHHHHHhh
Confidence 9999999 999999999875
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.20 E-value=1.9e-11 Score=104.29 Aligned_cols=96 Identities=28% Similarity=0.408 Sum_probs=90.0
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc------HHHHH
Q 005108 241 DAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNY------WRAHQ 314 (714)
Q Consensus 241 ~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~a~~ 314 (714)
++..++.+|..++..|+|++|+..|+++++.+|+++.+++++|.++..+|++++|+..|+++++++|++ ..+++
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 568899999999999999999999999999999999999999999999999999999999999999998 88999
Q ss_pred HHHHHHHHcCCHHHHHHHHHhh
Q 005108 315 RLGSLLVRLGQVENARRHLCLS 336 (714)
Q Consensus 315 ~la~~~~~~g~~~~A~~~~~~a 336 (714)
.+|.++..+|++++|+..|++.
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHHHhHhhhHhHHHHh
Confidence 9999999999888887766554
|
| >3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide formation, redox partner, oxidoreductase; 1.66A {Synechococcus SP} | Back alignment and structure |
|---|
Probab=99.19 E-value=1.1e-11 Score=104.98 Aligned_cols=74 Identities=14% Similarity=0.214 Sum_probs=61.7
Q ss_pred CceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecc----cCcchhhhCCccccceEEEEeCCeEEEEEcCC-CHH
Q 005108 629 GVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDID----ESPGVAHAENVRIVPTFKIYKNGSRMKEIVCP-SRD 703 (714)
Q Consensus 629 ~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d----~~~~l~~~~~v~~~Pt~~~~~~G~~~~~~~g~-~~~ 703 (714)
.+.+|+||++||++|+.+.|.++++..+++ ++.+|++ +.+++++.|+|+++||+++ +|++ +.|. +.+
T Consensus 13 k~~vV~F~A~WC~~C~~~~p~~~~~a~~~~---~v~~~~~~~~~~~~~l~~~~~V~~~PT~~i--~G~~---~~G~~~~~ 84 (106)
T 3kp8_A 13 QIGGTMYGAYWCPHCQDQKELFGAAFDQVP---YVECSPNGPGTPQAQECTEAGITSYPTWII--NGRT---YTGVRSLE 84 (106)
T ss_dssp HHTCEEEECTTCHHHHHHHHHHGGGGGGSC---EEESCTTCTTSCCCHHHHHTTCCSSSEEEE--TTEE---EESCCCHH
T ss_pred CCEEEEEECCCCHHHHHHHHHHHHHHHhCC---EEEEecccccchhHHHHHHcCCeEeCEEEE--CCEE---ecCCCCHH
Confidence 356899999999999999999999988775 4444433 6788999999999999877 9984 7788 999
Q ss_pred HHHHHHh
Q 005108 704 MLEHSVR 710 (714)
Q Consensus 704 ~l~~~~~ 710 (714)
.|++++.
T Consensus 85 ~l~~~~~ 91 (106)
T 3kp8_A 85 ALAVASG 91 (106)
T ss_dssp HHHHHHT
T ss_pred HHHHHhC
Confidence 9998874
|
| >1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=99.18 E-value=4.3e-11 Score=106.62 Aligned_cols=85 Identities=19% Similarity=0.285 Sum_probs=78.5
Q ss_pred CCCceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEeccc----------------------CcchhhhCCccccce
Q 005108 627 LPGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDE----------------------SPGVAHAENVRIVPT 684 (714)
Q Consensus 627 ~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~----------------------~~~l~~~~~v~~~Pt 684 (714)
..+++++.||++||++|+...|.+.++..+++++.|+.|+++. ..++++.|+|.++|+
T Consensus 23 ~~k~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P~ 102 (136)
T 1lu4_A 23 QGKPAVLWFWTPWCPFCNAEAPSLSQVAAANPAVTFVGIATRADVGAMQSFVSKYNLNFTNLNDADGVIWARYNVPWQPA 102 (136)
T ss_dssp TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCHHHHHHHHHHHTCCSEEEECTTSHHHHHTTCCSSSE
T ss_pred CCCEEEEEEECCcChhHHHHHHHHHHHHHHCCCcEEEEEEcCCCHHHHHHHHHHcCCCceEEECCchhHHHhcCCCCCCE
Confidence 3568999999999999999999999999999999999999987 678999999999999
Q ss_pred EEEE-eCCeEEEEEc---CC-CHHHHHHHHhhh
Q 005108 685 FKIY-KNGSRMKEIV---CP-SRDMLEHSVRHY 712 (714)
Q Consensus 685 ~~~~-~~G~~~~~~~---g~-~~~~l~~~~~~~ 712 (714)
++++ ++|+++ ++. |. +.++|++.|+++
T Consensus 103 ~~lid~~G~i~-~~~~~~g~~~~~~l~~~l~~l 134 (136)
T 1lu4_A 103 FVFYRADGTST-FVNNPTAAMSQDELSGRVAAL 134 (136)
T ss_dssp EEEECTTSCEE-EECCSSSCCCHHHHHHHHHHC
T ss_pred EEEECCCCcEE-EEEcCCCccCHHHHHHHHHHH
Confidence 9999 899999 999 98 999999999875
|
| >1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A | Back alignment and structure |
|---|
Probab=99.18 E-value=3.6e-12 Score=117.71 Aligned_cols=94 Identities=15% Similarity=0.165 Sum_probs=78.6
Q ss_pred hHHhhhccCCCceEEEeecCCCccccccchHHHHHHhhCC-CcEEEEEecccCcc-hhhhCCc--cccceEEEE-eCCeE
Q 005108 619 EQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYP-SINFLKVDIDESPG-VAHAENV--RIVPTFKIY-KNGSR 693 (714)
Q Consensus 619 e~~~~~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~-~~~~~~vd~d~~~~-l~~~~~v--~~~Pt~~~~-~~G~~ 693 (714)
+.+.......++++|+||++||++|+.+.|.++++...+. ++.|+.||+++.++ ++..|+| ..+||+++| ++|++
T Consensus 37 ~~~~~~~~~~k~vlv~F~a~WC~~C~~~~p~l~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~Pt~~~~d~~G~~ 116 (164)
T 1sen_A 37 DGKKEAAASGLPLMVIIHKSWCGACKALKPKFAESTEISELSHNFVMVNLEDEEEPKDEDFSPDGGYIPRILFLDPSGKV 116 (164)
T ss_dssp HHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHTCHHHHHHHTTSEEEEEEGGGSCSCGGGCTTCSCSSEEEEECTTSCB
T ss_pred HHHHHHHhcCCeEEEEEECCCCHHHHHHHHHHHHHHHHhhcCCeEEEEEecCCchHHHHHhcccCCcCCeEEEECCCCCE
Confidence 4555565667899999999999999999999998765543 47889999998877 8889998 669999999 89999
Q ss_pred EEEEcC-----------CCHHHHHHHHhhh
Q 005108 694 MKEIVC-----------PSRDMLEHSVRHY 712 (714)
Q Consensus 694 ~~~~~g-----------~~~~~l~~~~~~~ 712 (714)
+.++.| .+.++|.+.|+++
T Consensus 117 ~~~~~G~~~~~~~~~~~~~~~~l~~~l~~~ 146 (164)
T 1sen_A 117 HPEIINENGNPSYKYFYVSAEQVVQGMKEA 146 (164)
T ss_dssp CTTCCCTTSCTTSTTCCCSHHHHHHHHHHH
T ss_pred EEEEeCCCCccchhcccCCHHHHHHHHHHH
Confidence 999998 3778888888764
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.17 E-value=7.3e-11 Score=107.60 Aligned_cols=146 Identities=14% Similarity=0.060 Sum_probs=111.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCC
Q 005108 387 QLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPR 466 (714)
Q Consensus 387 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 466 (714)
..+..+|.++...|++++|+.+++++++..+.. ........++..+|.++...|++++|+.++++++++.+.
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~--------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 81 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF--------GDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQ 81 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHh--------CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 345568888888888888888888888765432 111223568899999999999999999999999976543
Q ss_pred CHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCC------CHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 005108 467 NVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPS------NSVLYCNRAACWFKLGQWERSVEDSNQA 540 (714)
Q Consensus 467 ~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~a 540 (714)
...... ....+..+|.++...|++++|+.++++++++.+. ...++..+|.++..+|++++|+++++++
T Consensus 82 ~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 155 (164)
T 3ro3_A 82 LKDRAV------EAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 155 (164)
T ss_dssp TTCHHH------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hCCcHH------HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 211100 0112235699999999999999999999986322 2578899999999999999999999999
Q ss_pred HHhCCC
Q 005108 541 LLIQPN 546 (714)
Q Consensus 541 l~~~p~ 546 (714)
+++...
T Consensus 156 ~~~~~~ 161 (164)
T 3ro3_A 156 LEISRE 161 (164)
T ss_dssp HHHHTT
T ss_pred HHHHHH
Confidence 987543
|
| >2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae} | Back alignment and structure |
|---|
Probab=99.17 E-value=2.2e-11 Score=111.15 Aligned_cols=86 Identities=10% Similarity=0.120 Sum_probs=74.6
Q ss_pred cCCCceEEEee-cCCCccccccchHH---HHHHhhC-CCcEEEEEecccCc-----------chhhhCCccccceEEEE-
Q 005108 626 SLPGVSVVHFK-SASNLHCKQISPYV---ETLCGRY-PSINFLKVDIDESP-----------GVAHAENVRIVPTFKIY- 688 (714)
Q Consensus 626 ~~~~~~vv~f~-a~~c~~C~~~~p~l---~~l~~~~-~~~~~~~vd~d~~~-----------~l~~~~~v~~~Pt~~~~- 688 (714)
...++++|+|| ++||++|+.+.|.+ .++...+ .++.++.||+++.. ++++.|+|.++||++++
T Consensus 45 ~~gk~vlv~F~ga~wC~~C~~~~p~l~~~~~~~~~~~~~~~~v~vd~~~~~~~~~~~~~~~~~l~~~~~v~~~Pt~~~~d 124 (154)
T 2ju5_A 45 QDHKPIGLFFTGSDWCMWCIKMQDQILQSSEFKHFAGVHLHMVEVDFPQKNHQPEEQRQKNQELKAQYKVTGFPELVFID 124 (154)
T ss_dssp HHCCCEEEEEECTTTCHHHHHHHHHTTTSHHHHHHHHHHCEEEEEECCSSCCCCHHHHHHHHHHHHHTTCCSSSEEEEEC
T ss_pred hCCCeEEEEEeCCCCCHhHHHHHHHHhcCHHHHHHhcCcEEEEEecCccccCCChhhHhhHHHHHHHcCCCCCCEEEEEc
Confidence 34678999999 99999999999999 7776655 46899999998765 88999999999999999
Q ss_pred eCCeEEEEEcCC---CHHHHHHHHhhh
Q 005108 689 KNGSRMKEIVCP---SRDMLEHSVRHY 712 (714)
Q Consensus 689 ~~G~~~~~~~g~---~~~~l~~~~~~~ 712 (714)
++|+++.++ |. +.+.+.++|+++
T Consensus 125 ~~G~~~~~~-G~~~~~~~~l~~~l~~~ 150 (154)
T 2ju5_A 125 AEGKQLARM-GFEPGGGAAYVSKVKSA 150 (154)
T ss_dssp TTCCEEEEE-CCCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEe-cCCCCCHHHHHHHHHHH
Confidence 999999999 87 588888888764
|
| >2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A | Back alignment and structure |
|---|
Probab=99.17 E-value=3.7e-11 Score=117.82 Aligned_cols=91 Identities=15% Similarity=0.078 Sum_probs=79.8
Q ss_pred hHHhhhccCCCce-EEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCcchhhhCCccccceEEEEeCCeEEEEE
Q 005108 619 EQFRAAVSLPGVS-VVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKEI 697 (714)
Q Consensus 619 e~~~~~i~~~~~~-vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~~~ 697 (714)
+.+..++...+.+ ++.||++||++|+.+.|.++++..+++++.|+.||+++.+++++.|+|.++||+++ ||+ +.++
T Consensus 126 ~~~~~~~~~~~~~~~v~F~a~wC~~C~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~--~G~-~~~~ 202 (229)
T 2ywm_A 126 KTLELLQVVDIPIEIWVFVTTSCGYCPSAAVMAWDFALANDYITSKVIDASENQDLAEQFQVVGVPKIVI--NKG-VAEF 202 (229)
T ss_dssp HHHHHHTTCCSCEEEEEEECTTCTTHHHHHHHHHHHHHHCTTEEEEEEEGGGCHHHHHHTTCCSSSEEEE--GGG-TEEE
T ss_pred HHHHHHHhcCCCeEEEEEECCCCcchHHHHHHHHHHHHHCCCeEEEEEECCCCHHHHHHcCCcccCEEEE--CCE-EEEe
Confidence 4455555455555 88999999999999999999999999889999999999999999999999999988 999 7778
Q ss_pred cCC-CHHHHHHHHhhh
Q 005108 698 VCP-SRDMLEHSVRHY 712 (714)
Q Consensus 698 ~g~-~~~~l~~~~~~~ 712 (714)
.|. +.++|.++|+++
T Consensus 203 ~G~~~~~~l~~~l~~~ 218 (229)
T 2ywm_A 203 VGAQPENAFLGYIMAV 218 (229)
T ss_dssp ESCCCHHHHHHHHHHH
T ss_pred eCCCCHHHHHHHHHHH
Confidence 899 999999998764
|
| >2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A | Back alignment and structure |
|---|
Probab=99.17 E-value=2.6e-11 Score=133.83 Aligned_cols=96 Identities=17% Similarity=0.292 Sum_probs=88.4
Q ss_pred hhhHHhhhccCCCceEEEeecCCCccccccchHHHHHHhhCC--CcEEEEEecccCcchhhhCCccccceEEEEeCCeE-
Q 005108 617 SLEQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYP--SINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSR- 693 (714)
Q Consensus 617 ~~e~~~~~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~--~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~- 693 (714)
+.+.|...+....+++|.||++||++|+.+.|.++++...+. ++.|++||+++..++++.|+|.++||+++|++|+.
T Consensus 20 ~~~~f~~~~~~~~~~lv~F~a~wC~~C~~~~p~~~~~a~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~g~~~ 99 (504)
T 2b5e_A 20 ATDSFNEYIQSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKNITLAQIDCTENQDLCMEHNIPGFPSLKIFKNSDVN 99 (504)
T ss_dssp CTTTHHHHHTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTTCEEEEEETTTCHHHHHHTTCCSSSEEEEEETTCTT
T ss_pred CHHHHHHHHhcCCeEEEEEECCCCHHHHHhHHHHHHHHHHhccCCeEEEEEECCCCHHHHHhcCCCcCCEEEEEeCCccc
Confidence 446788888888899999999999999999999999999987 49999999999999999999999999999999997
Q ss_pred -EEEEcCC-CHHHHHHHHhhh
Q 005108 694 -MKEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 694 -~~~~~g~-~~~~l~~~~~~~ 712 (714)
+.++.|. +.+.|.++|.+.
T Consensus 100 ~~~~~~G~~~~~~l~~~l~~~ 120 (504)
T 2b5e_A 100 NSIDYEGPRTAEAIVQFMIKQ 120 (504)
T ss_dssp CEEECCSCCSHHHHHHHHHHH
T ss_pred cceeecCCCCHHHHHHHHHHh
Confidence 8889998 999999999864
|
| >3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein disulfide isomerase, endoplasmic R isomerase; 1.83A {Homo sapiens} SCOP: c.47.1.0 PDB: 2lns_A 2lnt_A | Back alignment and structure |
|---|
Probab=99.16 E-value=5.5e-12 Score=113.58 Aligned_cols=81 Identities=9% Similarity=0.011 Sum_probs=64.8
Q ss_pred HHhhhccCCCceEEEeecCCCccccccchHHHHHHh--hCCCcEEEEEecc-cCcchhhhCCccccceEEEEe-CCeEEE
Q 005108 620 QFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCG--RYPSINFLKVDID-ESPGVAHAENVRIVPTFKIYK-NGSRMK 695 (714)
Q Consensus 620 ~~~~~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~--~~~~~~~~~vd~d-~~~~l~~~~~v~~~Pt~~~~~-~G~~~~ 695 (714)
.+..+...+++++|+||++||++|+.+.|.+.+... .+.+..|+.||+| +..+++..|+|.++||+++|+ +|+++.
T Consensus 36 al~~A~~~~KpVlV~F~A~WC~~Ck~m~p~~~~~~~~~~~~~~~fv~V~vD~e~~~~~~~~~v~~~PT~~f~~~~G~~v~ 115 (151)
T 3ph9_A 36 GLFYAQKSKKPLMVIHHLEDCQYSQALKKVFAQNEEIQEMAQNKFIMLNLMHETTDKNLSPDGQYVPRIMFVDPSLTVRA 115 (151)
T ss_dssp HHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHCHHHHHHHHHTCEEEEESSCCSCGGGCTTCCCSSEEEEECTTSCBCT
T ss_pred HHHHHHHcCCcEEEEEECCCCHhHHHHHHHHhcCHHHHHHhhcCeEEEEecCCchhhHhhcCCCCCCEEEEECCCCCEEE
Confidence 445555667899999999999999999998876421 2223457777775 456788999999999999997 999999
Q ss_pred EEcCC
Q 005108 696 EIVCP 700 (714)
Q Consensus 696 ~~~g~ 700 (714)
+++|.
T Consensus 116 ~~~G~ 120 (151)
T 3ph9_A 116 DIAGR 120 (151)
T ss_dssp TCCCS
T ss_pred EEeCC
Confidence 99996
|
| >1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=99.15 E-value=4.1e-11 Score=95.07 Aligned_cols=72 Identities=8% Similarity=0.177 Sum_probs=63.7
Q ss_pred eEEEeecCCCccccccchHHHHHHhhCC-CcEEEEEecccCcchhhhCCccccceEEEEeCCeEEEEEcCC--CHHHHHH
Q 005108 631 SVVHFKSASNLHCKQISPYVETLCGRYP-SINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKEIVCP--SRDMLEH 707 (714)
Q Consensus 631 ~vv~f~a~~c~~C~~~~p~l~~l~~~~~-~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~~~~g~--~~~~l~~ 707 (714)
..|+||++||++|+.+.|.++++..++. ++.++.|| .++++++|+|.++||+++ ||+.+.+ |. +.++|++
T Consensus 2 ~~v~f~a~wC~~C~~~~~~l~~~~~~~~~~~~~~~v~---~~~~~~~~~v~~~Pt~~~--~G~~~~~--G~~~~~~~l~~ 74 (77)
T 1ilo_A 2 MKIQIYGTGCANCQMLEKNAREAVKELGIDAEFEKIK---EMDQILEAGLTALPGLAV--DGELKIM--GRVASKEEIKK 74 (77)
T ss_dssp EEEEEECSSSSTTHHHHHHHHHHHHHTTCCEEEEEEC---SHHHHHHHTCSSSSCEEE--TTEEEEC--SSCCCHHHHHH
T ss_pred cEEEEEcCCChhHHHHHHHHHHHHHHcCCceEEEEec---CHHHHHHCCCCcCCEEEE--CCEEEEc--CCCCCHHHHHH
Confidence 3589999999999999999999999887 58888888 778999999999999988 9998887 65 7888887
Q ss_pred HH
Q 005108 708 SV 709 (714)
Q Consensus 708 ~~ 709 (714)
+|
T Consensus 75 ~l 76 (77)
T 1ilo_A 75 IL 76 (77)
T ss_dssp HC
T ss_pred Hh
Confidence 65
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.15 E-value=2e-11 Score=104.07 Aligned_cols=91 Identities=24% Similarity=0.388 Sum_probs=77.3
Q ss_pred HHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC------HHHHHHHHH
Q 005108 483 ARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNY------TKALLRRAA 556 (714)
Q Consensus 483 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~ 556 (714)
+..+|.+++..|++++|+..|+++++++|+++.+++++|.++..+|++++|++.|+++++++|++ ..+++.+|.
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 86 (111)
T 2l6j_A 7 QKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRLEL 86 (111)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHH
Confidence 34558888899999999999999999999888899999999999999999999999999988888 788888888
Q ss_pred HHHHhccHHHHHHHHHH
Q 005108 557 SNSKLEKWADAVRDFEV 573 (714)
Q Consensus 557 ~~~~~g~~~eA~~~~~~ 573 (714)
++..+|++++|+..|++
T Consensus 87 ~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 87 AQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHCCCCCSSSSSS
T ss_pred HHHHHHhHhhhHhHHHH
Confidence 88888888777766554
|
| >1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A | Back alignment and structure |
|---|
Probab=99.14 E-value=6.1e-11 Score=116.03 Aligned_cols=95 Identities=15% Similarity=0.214 Sum_probs=80.2
Q ss_pred hhHHhhhc-c--CCCceEEEeecC-CCccccccchHHHHHHhhCCCcEEEEEeccc--CcchhhhCCccccceEEEEeCC
Q 005108 618 LEQFRAAV-S--LPGVSVVHFKSA-SNLHCKQISPYVETLCGRYPSINFLKVDIDE--SPGVAHAENVRIVPTFKIYKNG 691 (714)
Q Consensus 618 ~e~~~~~i-~--~~~~~vv~f~a~-~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~--~~~l~~~~~v~~~Pt~~~~~~G 691 (714)
.++++..+ . ...++++.||++ ||++|+.+.|.++++....+.+.|++||+++ .+++++.|+|.++||+++|++|
T Consensus 9 ~~~~~~~~~~~~~~~v~lv~f~~~~~C~~C~~~~~~~~~la~~~~~v~~~~vd~~~~~~~~~~~~~~v~~~Pt~~~~~~g 88 (226)
T 1a8l_A 9 KKVIKEEFFSKMVNPVKLIVFVRKDHCQYCDQLKQLVQELSELTDKLSYEIVDFDTPEGKELAKRYRIDRAPATTITQDG 88 (226)
T ss_dssp HHHHHHHTGGGCCSCEEEEEEECSSSCTTHHHHHHHHHHHHTTCTTEEEEEEETTSHHHHHHHHHTTCCSSSEEEEEETT
T ss_pred HHHHHHHHHHhcCCCeEEEEEecCCCCchhHHHHHHHHHHHhhCCceEEEEEeCCCcccHHHHHHcCCCcCceEEEEcCC
Confidence 34454444 1 235778999999 9999999999999999877789999999999 9999999999999999999999
Q ss_pred eEE-EEEcCC-CHHHHHHHHhhh
Q 005108 692 SRM-KEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 692 ~~~-~~~~g~-~~~~l~~~~~~~ 712 (714)
+.+ .++.|. +.+.+..++..+
T Consensus 89 ~~~~~~~~G~~~~~~l~~~l~~~ 111 (226)
T 1a8l_A 89 KDFGVRYFGLPAGHEFAAFLEDI 111 (226)
T ss_dssp BCCSEEEESCCCTTHHHHHHHHH
T ss_pred ceeeEEEeccCcHHHHHHHHHHH
Confidence 876 788888 778888877653
|
| >3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=99.14 E-value=7.4e-11 Score=106.33 Aligned_cols=84 Identities=17% Similarity=0.296 Sum_probs=76.5
Q ss_pred CCCceEEEeecCCCccccccchHHHHHHhhCC--CcEEEEEeccc-------------------------CcchhhhCCc
Q 005108 627 LPGVSVVHFKSASNLHCKQISPYVETLCGRYP--SINFLKVDIDE-------------------------SPGVAHAENV 679 (714)
Q Consensus 627 ~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~--~~~~~~vd~d~-------------------------~~~l~~~~~v 679 (714)
..+++++.||++||++|+.+.|.+.++..+++ ++.|+.|+++. ...+++.|+|
T Consensus 33 ~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v 112 (145)
T 3erw_A 33 KGQKTILHFWTSWCPPCKKELPQFQSFYDAHPSDSVKLVTVNLVNSEQNQQVVEDFIKANKLTFPIVLDSKGELMKEYHI 112 (145)
T ss_dssp TTSEEEEEEECSSCHHHHHHHHHHHHHHHHCCCSSEEEEEEECGGGSSCHHHHHHHHHHTTCCSCEEECSSSHHHHHTTC
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEccCCcCCHHHHHHHHHHcCCceeEEEcCchhHHHhcCc
Confidence 45689999999999999999999999999997 69999999864 6689999999
Q ss_pred cccceEEEE-eCCeEEEEEcCC-CHHHHHHHHh
Q 005108 680 RIVPTFKIY-KNGSRMKEIVCP-SRDMLEHSVR 710 (714)
Q Consensus 680 ~~~Pt~~~~-~~G~~~~~~~g~-~~~~l~~~~~ 710 (714)
.++|+++++ ++|+++.++.|. +.++|++.|+
T Consensus 113 ~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~ 145 (145)
T 3erw_A 113 ITIPTSFLLNEKGEIEKTKIGPMTAEQLKEWTE 145 (145)
T ss_dssp CEESEEEEECTTCCEEEEEESCCCHHHHHHHHC
T ss_pred CccCeEEEEcCCCcEEEEEcCCcCHHHHHHhhC
Confidence 999999999 999999999999 9999998874
|
| >3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A | Back alignment and structure |
|---|
Probab=99.14 E-value=3.8e-11 Score=126.34 Aligned_cols=95 Identities=13% Similarity=0.113 Sum_probs=81.3
Q ss_pred hhhHHhhhccCCCceEEEeecCCCccccccc------hHHHHHHhhCC--CcEEEEEecccCcchhhhCCccccceEEEE
Q 005108 617 SLEQFRAAVSLPGVSVVHFKSASNLHCKQIS------PYVETLCGRYP--SINFLKVDIDESPGVAHAENVRIVPTFKIY 688 (714)
Q Consensus 617 ~~e~~~~~i~~~~~~vv~f~a~~c~~C~~~~------p~l~~l~~~~~--~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~ 688 (714)
+.++|...+....+++|+|||+||++|.... |.++.+...+. ++.|++||+++.+++|++|+|+++||+++|
T Consensus 19 t~~~f~~~i~~~~~vlV~FyApWC~~~~~~~~l~~~~p~~e~~a~~~~~~~v~~~~Vd~~~~~~l~~~~~V~~~PTl~~f 98 (367)
T 3us3_A 19 NAKNYKNVFKKYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKGVGFGLVDSEKDAAVAKKLGLTEEDSIYVF 98 (367)
T ss_dssp CTTTHHHHHHHCSEEEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEETTTTHHHHHHHTCCSTTEEEEE
T ss_pred CHHHHHHHHhhCCeEEEEEECCCchhHHHhhhhccccHHHHHHHHHhhcCCceEEEEeCcccHHHHHHcCCCcCceEEEE
Confidence 4467888887788999999999999974333 57778777664 499999999999999999999999999999
Q ss_pred eCCeEEEEEcCC-CHHHHHHHHhhh
Q 005108 689 KNGSRMKEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 689 ~~G~~~~~~~g~-~~~~l~~~~~~~ 712 (714)
++|+++ ++.|. +.+.|.++|.+.
T Consensus 99 ~~G~~~-~y~G~~~~~~i~~~i~~~ 122 (367)
T 3us3_A 99 KEDEVI-EYDGEFSADTLVEFLLDV 122 (367)
T ss_dssp ETTEEE-ECCSCCSHHHHHHHHHHH
T ss_pred ECCcEE-EeCCCCCHHHHHHHHHHh
Confidence 999876 77888 999999999874
|
| >2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain (residues 33-153), D domain (residues 154-261), CHA; 2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A | Back alignment and structure |
|---|
Probab=99.13 E-value=7.2e-11 Score=114.95 Aligned_cols=91 Identities=10% Similarity=0.164 Sum_probs=80.5
Q ss_pred hhHHhhhccCCCceEEEeec--CCCccccccchHHHHHHhhC---CCcEEEEEeccc-----CcchhhhCCcc--ccceE
Q 005108 618 LEQFRAAVSLPGVSVVHFKS--ASNLHCKQISPYVETLCGRY---PSINFLKVDIDE-----SPGVAHAENVR--IVPTF 685 (714)
Q Consensus 618 ~e~~~~~i~~~~~~vv~f~a--~~c~~C~~~~p~l~~l~~~~---~~~~~~~vd~d~-----~~~l~~~~~v~--~~Pt~ 685 (714)
..+|..++....+++|+||+ +||+ +.|.++++...+ +++.|++||+++ ++++++.|+|. ++|||
T Consensus 12 ~~nF~~~i~~~~~vlV~FyA~~pWCg----l~P~~e~lA~~~~~~~~v~~akVDvd~~g~~~~~~l~~~~~V~~~~~PTl 87 (240)
T 2qc7_A 12 TVTFYKVIPKSKFVLVKFDTQYPYGE----KQDEFKRLAENSASSDDLLVAEVGISDYGDKLNMELSEKYKLDKESYPVF 87 (240)
T ss_dssp TTHHHHHGGGCSEEEEEECCSSCCSH----HHHHHHHHHHHHTTCTTEEEEEECCCCSSSCCSHHHHHHTTCCGGGCSEE
T ss_pred HHHHHHHHcCCCCEEEEEeCCCCCCc----chHHHHHHHHHhcCCCCeEEEEEeCCcccchhhHHHHHHcCCCCCCCCEE
Confidence 36777777777899999999 9999 999999999887 469999999665 88999999999 99999
Q ss_pred EEEeCCe--EEEEEcCC-CHHHHHHHHhhh
Q 005108 686 KIYKNGS--RMKEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 686 ~~~~~G~--~~~~~~g~-~~~~l~~~~~~~ 712 (714)
++|++|+ .+.++.|. +.+.|.++|.++
T Consensus 88 ~~f~~G~~~~~~~y~G~~~~~~L~~fi~~~ 117 (240)
T 2qc7_A 88 YLFRDGDFENPVPYTGAVKVGAIQRWLKGQ 117 (240)
T ss_dssp EEEETTCSSCCEECCSCSCHHHHHHHHHHT
T ss_pred EEEeCCCcCcceeecCCCCHHHHHHHHHHh
Confidence 9999998 46788898 999999999875
|
| >2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A | Back alignment and structure |
|---|
Probab=99.13 E-value=9.5e-11 Score=106.05 Aligned_cols=86 Identities=24% Similarity=0.371 Sum_probs=77.4
Q ss_pred CCCceEEEeecCCCccccccchHHHHHHhhCCC-cEEEEEec---------------------------ccCcchhhhCC
Q 005108 627 LPGVSVVHFKSASNLHCKQISPYVETLCGRYPS-INFLKVDI---------------------------DESPGVAHAEN 678 (714)
Q Consensus 627 ~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~-~~~~~vd~---------------------------d~~~~l~~~~~ 678 (714)
..+++++.||++||+.|+...|.+.++..++++ +.|+.|++ +....+++.|+
T Consensus 28 ~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 107 (148)
T 2b5x_A 28 GEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQDQLNVVAVHMPRSEDDLDPGKIKETAAEHDITQPIFVDSDHALTDAFE 107 (148)
T ss_dssp TTSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTSEEEEEECCCSTTTSSHHHHHHHHHHTTCCSCEEECSSCHHHHHTC
T ss_pred CCCEEEEEEEcCCCHHHHHHhHHHHHHHHHhcCCcEEEEEEcCCCccccCHHHHHHHHHHcCCCcceEECCchhHHHHhC
Confidence 456899999999999999999999999999876 99999985 44567899999
Q ss_pred ccccceEEEE-eCCeEEEEEcCC-CHHHHHHHHhhh
Q 005108 679 VRIVPTFKIY-KNGSRMKEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 679 v~~~Pt~~~~-~~G~~~~~~~g~-~~~~l~~~~~~~ 712 (714)
|.++|+++++ ++|+++.+..|. +.++|++.|+++
T Consensus 108 v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~ 143 (148)
T 2b5x_A 108 NEYVPAYYVFDKTGQLRHFQAGGSGMKMLEKRVNRV 143 (148)
T ss_dssp CCCSSEEEEECTTCBEEEEEESCSTTHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCcEEEEecCCCCHHHHHHHHHHH
Confidence 9999999999 999999999998 889999998875
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=99.12 E-value=5.4e-10 Score=91.26 Aligned_cols=85 Identities=35% Similarity=0.519 Sum_probs=81.2
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 005108 240 GDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSL 319 (714)
Q Consensus 240 ~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~ 319 (714)
.++..++.+|..++..|++++|+.+|+++++.+|++..+++.+|.++..+|++++|+..|+++++++|++..++..+|.+
T Consensus 7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 86 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcC
Q 005108 320 LVRLG 324 (714)
Q Consensus 320 ~~~~g 324 (714)
+..+|
T Consensus 87 ~~~~g 91 (91)
T 1na3_A 87 KQKQG 91 (91)
T ss_dssp HHHHC
T ss_pred HHhcC
Confidence 88764
|
| >1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A | Back alignment and structure |
|---|
Probab=99.12 E-value=1.3e-10 Score=103.31 Aligned_cols=85 Identities=20% Similarity=0.230 Sum_probs=77.1
Q ss_pred CCCceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEeccc-----------------------CcchhhhCCccccc
Q 005108 627 LPGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDE-----------------------SPGVAHAENVRIVP 683 (714)
Q Consensus 627 ~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~-----------------------~~~l~~~~~v~~~P 683 (714)
..+++++.||++||++|+...|.+.++..+++++.|+.|++++ ...+++.|+|.++|
T Consensus 24 ~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P 103 (136)
T 1zzo_A 24 LGKPAVLWFWAPWCPTCQGEAPVVGQVAASHPEVTFVGVAGLDQVPAMQEFVNKYPVKTFTQLADTDGSVWANFGVTQQP 103 (136)
T ss_dssp TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCHHHHHHHHHHTTCTTSEEEECTTCHHHHHTTCCSSS
T ss_pred CCCeEEEEEEcCCChhHHHHHHHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHHHcCCCceEEEEcCCcHHHHHcCCCCCc
Confidence 3468999999999999999999999999999999999999854 56789999999999
Q ss_pred eEEEE-eCCeEEEEEcCC-CHHHHHHHHhhh
Q 005108 684 TFKIY-KNGSRMKEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 684 t~~~~-~~G~~~~~~~g~-~~~~l~~~~~~~ 712 (714)
+++++ ++|+++ ++.|. +.++|++.|+++
T Consensus 104 ~~~~id~~g~i~-~~~g~~~~~~l~~~l~~~ 133 (136)
T 1zzo_A 104 AYAFVDPHGNVD-VVRGRMSQDELTRRVTAL 133 (136)
T ss_dssp EEEEECTTCCEE-EEESCCCHHHHHHHHHHH
T ss_pred eEEEECCCCCEE-EEecCCCHHHHHHHHHHH
Confidence 99999 799999 99998 999999999875
|
| >2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein disulfide isomerase, PIPE, dorsal-ventral patterning, chaperone, WIND mutants; 1.75A {Drosophila melanogaster} SCOP: a.71.1.1 c.47.1.7 PDB: 1ovn_A 2c0f_A 2c1y_A 2c0e_A | Back alignment and structure |
|---|
Probab=99.12 E-value=9.1e-11 Score=114.56 Aligned_cols=91 Identities=16% Similarity=0.174 Sum_probs=79.9
Q ss_pred hhhHHhhhccCCCceEEEee--cCCCccccccchHHHHHHhhC----CCcEEEEEeccc-----CcchhhhCCcc--ccc
Q 005108 617 SLEQFRAAVSLPGVSVVHFK--SASNLHCKQISPYVETLCGRY----PSINFLKVDIDE-----SPGVAHAENVR--IVP 683 (714)
Q Consensus 617 ~~e~~~~~i~~~~~~vv~f~--a~~c~~C~~~~p~l~~l~~~~----~~~~~~~vd~d~-----~~~l~~~~~v~--~~P 683 (714)
+..+|..++.....++|+|| ++||+ +.|.++++...+ +++.|++||+++ +++++..|+|+ ++|
T Consensus 22 t~~nF~~vi~~~~~vlV~Fy~~ApWCg----l~P~~e~lA~~~~~~~~~v~~akVD~d~~g~~~n~~la~~~~V~~~~~P 97 (248)
T 2c0g_A 22 DELSFEKTVERFPYSVVKFDIASPYGE----KHEAFTAFSKSAHKATKDLLIATVGVKDYGELENKALGDRYKVDDKNFP 97 (248)
T ss_dssp CTTTHHHHHTTSSEEEEEEEESSCCSH----HHHHHHHHHHHHHHHCSSEEEEEEEECSSTTCTTHHHHHHTTCCTTSCC
T ss_pred CHHHHHHHHhcCCCEEEEEECCCCCCc----cHHHHHHHHHHHhccCCCeEEEEEECCcccccccHHHHHHhCCCcCCCC
Confidence 34677777777789999999 99998 999999999887 469999999998 89999999999 999
Q ss_pred eEEEEeCCeE--EEEE--cCC-CHHHHHHHHhhh
Q 005108 684 TFKIYKNGSR--MKEI--VCP-SRDMLEHSVRHY 712 (714)
Q Consensus 684 t~~~~~~G~~--~~~~--~g~-~~~~l~~~~~~~ 712 (714)
||++|+ |+. +.++ .|. +.+.|..+|.++
T Consensus 98 Tl~~F~-G~~~~~~~y~~~G~~~~~~L~~fi~~~ 130 (248)
T 2c0g_A 98 SIFLFK-GNADEYVQLPSHVDVTLDNLKAFVSAN 130 (248)
T ss_dssp EEEEES-SSSSSEEECCTTSCCCHHHHHHHHHHH
T ss_pred eEEEEe-CCcCcceeecccCCCCHHHHHHHHHHh
Confidence 999999 983 5666 787 999999999875
|
| >2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.11 E-value=1e-10 Score=115.38 Aligned_cols=81 Identities=21% Similarity=0.185 Sum_probs=73.4
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhC-----CCcEEEEEecccCcchhhhCCccccceEEEEeCCeEEEEEcCC-C
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRY-----PSINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKEIVCP-S 701 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~-----~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~~~~g~-~ 701 (714)
..+.++.||++||++|+.+.|.++++...+ +++.+..||+++.+++++.|+|+++||+++ ||+.+ +.|. +
T Consensus 138 ~~~~vv~F~a~wC~~C~~~~p~l~~la~~~~~~~~~~v~~~~vd~~~~~~~~~~~~V~~vPt~~i--~G~~~--~~G~~~ 213 (243)
T 2hls_A 138 GRVHIETIITPSCPYCPYAVLLAHMFAYEAWKQGNPVILSEAVEAYENPDIADKYGVMSVPSIAI--NGYLV--FVGVPY 213 (243)
T ss_dssp SCEEEEEEECSSCSSHHHHHHHHHHHHHHHHHTTCCCEEEEEEETTTCHHHHHHTTCCSSSEEEE--TTEEE--EESCCC
T ss_pred CCcEEEEEECCCCCCcHHHHHHHHHHHHHcccccCCcEEEEEEECccCHHHHHHcCCeeeCeEEE--CCEEE--EeCCCC
Confidence 346789999999999999999999999888 679999999999999999999999999988 99865 7788 9
Q ss_pred HHHHHHHHhhh
Q 005108 702 RDMLEHSVRHY 712 (714)
Q Consensus 702 ~~~l~~~~~~~ 712 (714)
.++|.++|.++
T Consensus 214 ~~~l~~~l~~~ 224 (243)
T 2hls_A 214 EEDFLDYVKSA 224 (243)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998864
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.11 E-value=3.5e-10 Score=97.37 Aligned_cols=100 Identities=16% Similarity=0.132 Sum_probs=87.0
Q ss_pred HHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCH
Q 005108 451 ENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQW 530 (714)
Q Consensus 451 ~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 530 (714)
++|+..|+++++.+|++..++..+ |.++...|++++|+.+|+++++++|++..+|+.+|.+|..+|++
T Consensus 2 ~~a~~~~~~al~~~p~~~~~~~~l------------g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 69 (115)
T 2kat_A 2 QAITERLEAMLAQGTDNMLLRFTL------------GKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDR 69 (115)
T ss_dssp CCHHHHHHHHHTTTCCCHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred hHHHHHHHHHHHhCCCcHHHHHHH------------HHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCH
Confidence 368899999999999999988876 99999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhc
Q 005108 531 ERSVEDSNQALLIQPN--YTKALLRRAASNSKLE 562 (714)
Q Consensus 531 ~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g 562 (714)
++|+..|++++++.|. +......+...+..++
T Consensus 70 ~~A~~~~~~al~~~~~~~~~~~~~~l~~~l~~l~ 103 (115)
T 2kat_A 70 AGARQAWESGLAAAQSRGDQQVVKELQVFLRRLA 103 (115)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccccHHHHHHHHHHHHHhc
Confidence 9999999999998774 3444445554444444
|
| >2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A | Back alignment and structure |
|---|
Probab=99.09 E-value=1.4e-10 Score=105.47 Aligned_cols=85 Identities=18% Similarity=0.276 Sum_probs=76.8
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhCC--CcEEEEEeccc----------------------CcchhhhCCccccc
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRYP--SINFLKVDIDE----------------------SPGVAHAENVRIVP 683 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~--~~~~~~vd~d~----------------------~~~l~~~~~v~~~P 683 (714)
.+++++.||++||++|+...|.+.++..+++ ++.|+.|++++ ...+++.|+|.++|
T Consensus 26 gk~vlv~F~~~~C~~C~~~~~~l~~~~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P 105 (151)
T 2f9s_A 26 GKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQGVEIVAVNVGESKIAVHNFMKSYGVNFPVVLDTDRQVLDAYDVSPLP 105 (151)
T ss_dssp TSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCHHHHHHHHHHHTCCSCEEEETTSHHHHHTTCCSSC
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHHHHcCCCceEEECCchHHHHhcCCCCCC
Confidence 4689999999999999999999999999886 49999999876 34789999999999
Q ss_pred eEEEE-eCCeEEEEEcCC-CHHHHHHHHhhh
Q 005108 684 TFKIY-KNGSRMKEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 684 t~~~~-~~G~~~~~~~g~-~~~~l~~~~~~~ 712 (714)
+++++ ++|+++.++.|. +.+.|++.|+++
T Consensus 106 ~~~lid~~G~i~~~~~G~~~~~~l~~~l~~l 136 (151)
T 2f9s_A 106 TTFLINPEGKVVKVVTGTMTESMIHDYMNLI 136 (151)
T ss_dssp EEEEECTTSEEEEEEESCCCHHHHHHHHHHH
T ss_pred eEEEECCCCcEEEEEeCCCCHHHHHHHHHHH
Confidence 98888 999999999999 999999999875
|
| >3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=99.08 E-value=1.6e-10 Score=105.13 Aligned_cols=86 Identities=14% Similarity=0.179 Sum_probs=75.7
Q ss_pred CCCceEEEeecCCCccccccchHHHHHHhhCC--CcEEEEEeccc------------------------CcchhhhCC--
Q 005108 627 LPGVSVVHFKSASNLHCKQISPYVETLCGRYP--SINFLKVDIDE------------------------SPGVAHAEN-- 678 (714)
Q Consensus 627 ~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~--~~~~~~vd~d~------------------------~~~l~~~~~-- 678 (714)
.+++++|+||++||++|+...|.+.++..++. ++.++.|++|. ...+++.|+
T Consensus 23 ~gk~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (151)
T 3raz_A 23 KAPVRIVNLWATWCGPCRKEMPAMSKWYKAQKKGSVDMVGIALDTSDNIGNFLKQTPVSYPIWRYTGANSRNFMKTYGNT 102 (151)
T ss_dssp CSSEEEEEEECTTCHHHHHHHHHHHHHHHTSCTTTEEEEEEESSCHHHHHHHHHHSCCSSCEEEECCSCHHHHHHTTTCC
T ss_pred CCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhccCCeEEEEEECCChHHHHHHHHHcCCCCceEecCccchHHHHHHhCCc
Confidence 35689999999999999999999999999984 59999999873 344678899
Q ss_pred ccccceEEEE-eCCeEEEEEcCC-CHHHHHHHHhhh
Q 005108 679 VRIVPTFKIY-KNGSRMKEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 679 v~~~Pt~~~~-~~G~~~~~~~g~-~~~~l~~~~~~~ 712 (714)
|.++|+++++ ++|+++.++.|. +.++|++.|+++
T Consensus 103 v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~l 138 (151)
T 3raz_A 103 VGVLPFTVVEAPKCGYRQTITGEVNEKSLTDAVKLA 138 (151)
T ss_dssp SCCSSEEEEEETTTTEEEECCSCCCHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCcEEEEECCCCCHHHHHHHHHHH
Confidence 9999988777 999999999999 999999999875
|
| >3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.08 E-value=1.3e-10 Score=106.02 Aligned_cols=84 Identities=17% Similarity=0.141 Sum_probs=77.2
Q ss_pred CceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEec---------------------------ccCcchhhhCCccc
Q 005108 629 GVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDI---------------------------DESPGVAHAENVRI 681 (714)
Q Consensus 629 ~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~---------------------------d~~~~l~~~~~v~~ 681 (714)
+++++.||++||++|+...|.+.++..++ ++.|+.|++ +....+++.|+|.+
T Consensus 31 k~vll~f~~~~C~~C~~~~~~l~~l~~~~-~v~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~ 109 (154)
T 3ia1_A 31 KPAVIVFWASWCTVCKAEFPGLHRVAEET-GVPFYVISREPRDTREVVLEYMKTYPRFIPLLASDRDRPHEVAARFKVLG 109 (154)
T ss_dssp SSEEEEEECTTCHHHHHHHHHHHHHHHHH-CCCEEEEECCTTCCHHHHHHHHTTCTTEEECBCCSSCCHHHHHTTSSBCS
T ss_pred CeEEEEEEcccChhHHHHHHHHHHHHHHc-CCeEEEEeCCCcccHHHHHHHHHHcCCCcccccccccchHHHHHHhCCCc
Confidence 68999999999999999999999999999 999999999 35677899999999
Q ss_pred cceEEEE-eCCeEEEEEcCC-CHHHHHHHHhhhc
Q 005108 682 VPTFKIY-KNGSRMKEIVCP-SRDMLEHSVRHYS 713 (714)
Q Consensus 682 ~Pt~~~~-~~G~~~~~~~g~-~~~~l~~~~~~~~ 713 (714)
+|+++++ ++|+++.++.|. +.++|++.|+++.
T Consensus 110 ~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~~ 143 (154)
T 3ia1_A 110 QPWTFVVDREGKVVALFAGRAGREALLDALLLAG 143 (154)
T ss_dssp SCEEEEECTTSEEEEEEESBCCHHHHHHHHHHTT
T ss_pred ccEEEEECCCCCEEEEEcCCCCHHHHHHHHHhcc
Confidence 9997777 999999999999 9999999998864
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.07 E-value=1.4e-07 Score=103.19 Aligned_cols=309 Identities=7% Similarity=-0.076 Sum_probs=208.0
Q ss_pred cHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHh---CCCCHHHHHHHHHHHH----HCCCHHHHHHHHHHHHhcCCCcHH-
Q 005108 241 DAEELKRMGNELYRKGC-FGEALSMYDKAISL---APRNAAFRSNRAAALT----GLGRIGEAVKECEEAVRLDPNYWR- 311 (714)
Q Consensus 241 ~~~~~~~~g~~~~~~g~-~~~Al~~~~~al~~---~p~~~~~~~~la~~~~----~~g~~~~A~~~~~~al~~~p~~~~- 311 (714)
+.+.|..........++ .+.....|+.++.. ++.+..+|...+..+. ..++.+.+...|++++..-..+..
T Consensus 46 s~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~ 125 (493)
T 2uy1_A 46 NLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSE 125 (493)
T ss_dssp CHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHH
T ss_pred CHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHH
Confidence 88888888888777764 45677889999975 7888888888887654 346788999999999996433332
Q ss_pred HHHHHHHHHH-------------HcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCC---------HHH
Q 005108 312 AHQRLGSLLV-------------RLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGD---------WKS 369 (714)
Q Consensus 312 a~~~la~~~~-------------~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~---------~~~ 369 (714)
.|......-. ....+..|...|+.+....... .+..+..... + ..++ .+.
T Consensus 126 lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~------s~~~W~~y~~-~-E~~~~~~~~~~~~~~R 197 (493)
T 2uy1_A 126 LWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGW------SVKNAARLID-L-EMENGMKLGGRPHESR 197 (493)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC------SHHHHHHHHH-H-HHTCTTCCCHHHHHHH
T ss_pred HHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhc------cHHHHHHHHH-H-HhcCCccCcchhhHHH
Confidence 2222222111 1123333444443332100000 0011111111 1 1111 345
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchh--hhh------hhh-----------
Q 005108 370 ALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQ--TRF------FGM----------- 430 (714)
Q Consensus 370 Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~--~~~------~~~----------- 430 (714)
....|++++...|.. +.+|...+..+...|+.++|...|++++.. |.+..... ..+ ...
T Consensus 198 v~~~ye~al~~~p~~-~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~ 275 (493)
T 2uy1_A 198 MHFIHNYILDSFYYA-EEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAE 275 (493)
T ss_dssp HHHHHHHHHHHTTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC-----
T ss_pred HHHHHHHHHHcCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccc
Confidence 678999999988864 888888999999999999999999999999 87632111 000 000
Q ss_pred -------hhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCc-CHHHHHHH
Q 005108 431 -------LSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSE-RFTEACQA 502 (714)
Q Consensus 431 -------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g-~~~~A~~~ 502 (714)
.....+|...+..+.+.+..+.|...|+++ ...+.....|... +...+..+ +.+.|...
T Consensus 276 ~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~------------A~lE~~~~~d~~~ar~i 342 (493)
T 2uy1_A 276 SAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYC------------AFIEYYATGSRATPYNI 342 (493)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHH------------HHHHHHHHCCSHHHHHH
T ss_pred hhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHH------------HHHHHHHCCChHHHHHH
Confidence 001245667777777788899999999999 4333344454433 55455545 69999999
Q ss_pred HHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 005108 503 YGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRR 576 (714)
Q Consensus 503 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~ 576 (714)
|+.+++..|+++..+...+......|+.+.|...|+++ +.....|......-...|+.+.+...++++++
T Consensus 343 fe~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~----~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 343 FSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL----EKTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS----CCBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999999999999888899899999999999999998 34567777777777788998888888887765
|
| >2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.06 E-value=2.8e-10 Score=103.55 Aligned_cols=86 Identities=14% Similarity=0.209 Sum_probs=77.1
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhCCC--cEEEEEecccCc-----------------------chhhhCCcccc
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRYPS--INFLKVDIDESP-----------------------GVAHAENVRIV 682 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~--~~~~~vd~d~~~-----------------------~l~~~~~v~~~ 682 (714)
.+++++.||++||+.|+...|.+.++..++++ +.|+.|+++... ++++.|+|.++
T Consensus 30 gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~ 109 (152)
T 2lja_A 30 GKYIYIDVWATWCGPCRGELPALKELEEKYAGKDIHFVSLSCDKNKKAWENMVTKDQLKGIQLHMGTDRTFMDAYLINGI 109 (152)
T ss_dssp TSEEEEEECCSSCCGGGGTHHHHHHHHHHSTTSSEEEEEEECCSCHHHHHHHHHHHTCCSEEEECSSCTHHHHHTTCCSS
T ss_pred CCEEEEEEECCcCHhHHHHhHHHHHHHHHhccCCeEEEEEEccCcHHHHHHHHHhcCCCCceeecCcchhHHHHcCcCCC
Confidence 46899999999999999999999999999964 889999988754 68899999999
Q ss_pred ceEEEE-eCCeEEEEEcCC-CHHHHHHHHhhhc
Q 005108 683 PTFKIY-KNGSRMKEIVCP-SRDMLEHSVRHYS 713 (714)
Q Consensus 683 Pt~~~~-~~G~~~~~~~g~-~~~~l~~~~~~~~ 713 (714)
|+++++ ++|+++.+..|. +.++|++.|+++.
T Consensus 110 P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~~ 142 (152)
T 2lja_A 110 PRFILLDRDGKIISANMTRPSDPKTAEKFNELL 142 (152)
T ss_dssp CCEEEECTTSCEEESSCCCTTCHHHHHHHHHHH
T ss_pred CEEEEECCCCeEEEccCCCCCHHHHHHHHHHHh
Confidence 999999 599999999998 8899999998763
|
| >3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=1.4e-10 Score=126.41 Aligned_cols=99 Identities=17% Similarity=0.200 Sum_probs=81.9
Q ss_pred eeehhhhHHhhhc-cCCCceEEEeecCCCccccccchHHHHHHhhCCC----cEEEEEecc--cCcchhhhCCccccceE
Q 005108 613 EEVSSLEQFRAAV-SLPGVSVVHFKSASNLHCKQISPYVETLCGRYPS----INFLKVDID--ESPGVAHAENVRIVPTF 685 (714)
Q Consensus 613 ~~i~~~e~~~~~i-~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~----~~~~~vd~d--~~~~l~~~~~v~~~Pt~ 685 (714)
..+.. +.|...+ ...++++|+||++||++|+.+.|.++++..++.+ +.|+.||++ +..++++.|+|.++||+
T Consensus 15 ~~Lt~-~~f~~~v~~~~k~vlV~FyA~WC~pCk~~~P~l~~la~~~~~~~~~v~~~~VD~d~d~~~~l~~~~~V~~~PTl 93 (519)
T 3t58_A 15 TLLDA-DSVRPTVLGSSSAWAVEFFASWCGHAIAFAPTWKELANDVKDWRPALNLAVLDCAEETNSAVCREFNIAGFPTV 93 (519)
T ss_dssp EEECT-TTHHHHHSSCSSEEEEEEECTTSHHHHHHHHHHHHHHHHHGGGTTTEEEEEEETTSGGGHHHHHHTTCCSBSEE
T ss_pred EECCh-HHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhhCcCCcEEEEEEECCccccHHHHHHcCCcccCEE
Confidence 33433 4566544 5567999999999999999999999999998864 999999995 58899999999999999
Q ss_pred EEEe----CCeEEEEEcCC-CHHHHHHHHhhh
Q 005108 686 KIYK----NGSRMKEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 686 ~~~~----~G~~~~~~~g~-~~~~l~~~~~~~ 712 (714)
++|+ +|+.+....|. +.+.|+++|.++
T Consensus 94 ~~f~~g~~~G~~~~~~~g~~~~~~L~~~l~~~ 125 (519)
T 3t58_A 94 RFFQAFTKNGSGATLPGAGANVQTLRMRLIDA 125 (519)
T ss_dssp EEECTTCCSCCCEEECCSSCCHHHHHHHHHHH
T ss_pred EEEcCcccCCCceeEecCCCCHHHHHHHHHHH
Confidence 9998 56666666666 999999988764
|
| >3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=99.06 E-value=3.5e-10 Score=103.69 Aligned_cols=85 Identities=15% Similarity=0.167 Sum_probs=74.4
Q ss_pred CCceEEEeecCCCcccccc-chHHHHHHhhCC--CcEEEEEecc----------------------------cCc-----
Q 005108 628 PGVSVVHFKSASNLHCKQI-SPYVETLCGRYP--SINFLKVDID----------------------------ESP----- 671 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~-~p~l~~l~~~~~--~~~~~~vd~d----------------------------~~~----- 671 (714)
.++++++||++||++|+.. .|.+.++..+|+ ++.|+.|+++ ...
T Consensus 28 gk~vlv~f~a~wC~~C~~~~~~~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 107 (158)
T 3eyt_A 28 GKVIVIEAFQMLCPGCVMHGIPLAQKVRAAFPEDKVAVLGLHTVFEHHEAMTPISLKAFLHEYRIKFPVGVDQPGDGAMP 107 (158)
T ss_dssp TSEEEEEEECTTCHHHHHTHHHHHHHHHHHSCTTTEEEEEEECCCSCGGGSCHHHHHHHHHHTTCCSCEEEECCCSSSSC
T ss_pred CCEEEEEEECCcCcchhhhhhHHHHHHHHHhCcCCEEEEEEEecccccccCCHHHHHHHHHHcCCCceEEEcCccchhhH
Confidence 5689999999999999996 999999999997 4889988853 222
Q ss_pred chhhhCCccccceEEEE-eCCeEEEEEcCC-CHHHHHHHHhhh
Q 005108 672 GVAHAENVRIVPTFKIY-KNGSRMKEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 672 ~l~~~~~v~~~Pt~~~~-~~G~~~~~~~g~-~~~~l~~~~~~~ 712 (714)
.+++.|+|.++|+++++ ++|+++.++.|. +.++|++.|+++
T Consensus 108 ~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~l 150 (158)
T 3eyt_A 108 RTMAAYQMRGTPSLLLIDKAGDLRAHHFGDVSELLLGAEIATL 150 (158)
T ss_dssp HHHHHTTCCSSSEEEEECTTSEEEEEEESCCCHHHHHHHHHHH
T ss_pred HHHHHcCCCCCCEEEEECCCCCEEEEEeCCCCHHHHHHHHHHH
Confidence 58999999999998888 999999999999 999999998875
|
| >2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A | Back alignment and structure |
|---|
Probab=99.06 E-value=1.1e-10 Score=107.91 Aligned_cols=86 Identities=15% Similarity=0.198 Sum_probs=73.7
Q ss_pred CCCceEEEeecCCCccccccchHHHHHHhhC--CCcEEEEEe----------------------------cccCcchhhh
Q 005108 627 LPGVSVVHFKSASNLHCKQISPYVETLCGRY--PSINFLKVD----------------------------IDESPGVAHA 676 (714)
Q Consensus 627 ~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~--~~~~~~~vd----------------------------~d~~~~l~~~ 676 (714)
..++++++||++||++|+.+.|.+.++..++ .++.|+.|+ .+...++++.
T Consensus 37 ~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 116 (164)
T 2h30_A 37 KDKPTLIKFWASWCPLCLSELGQAEKWAQDAKFSSANLITVASPGFLHEKKDGEFQKWYAGLNYPKLPVVTDNGGTIAQN 116 (164)
T ss_dssp TTSCEEEEECCTTCHHHHHHHHHHHHHHTCGGGTTSEEEEEECTTSTTCCCTTHHHHHHTTSCCTTSCEEECTTCHHHHH
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCcEEEEEEcCCCccccCHHHHHHHHHhCCCCcceEEEcCchHHHHH
Confidence 4568999999999999999999999999886 346665554 4446678999
Q ss_pred CCccccceEEEE-eCCeEEEEEcCC-CHHHHHHHHhhh
Q 005108 677 ENVRIVPTFKIY-KNGSRMKEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 677 ~~v~~~Pt~~~~-~~G~~~~~~~g~-~~~~l~~~~~~~ 712 (714)
|+|.++|+++++ ++|+++.++.|. +.++|+++|+++
T Consensus 117 ~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~~ 154 (164)
T 2h30_A 117 LNISVYPSWALIGKDGDVQRIVKGSINEAQALALIRNP 154 (164)
T ss_dssp TTCCSSSEEEEECTTSCEEEEEESCCCHHHHHHHHHCT
T ss_pred cCCCccceEEEECCCCcEEEEEcCCCCHHHHHHHHHHH
Confidence 999999999988 999999999998 999999999875
|
| >3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.06 E-value=1.5e-10 Score=134.97 Aligned_cols=98 Identities=16% Similarity=0.213 Sum_probs=82.3
Q ss_pred ehhhhHHhhhccCCCceEEEeecCCCccccccchHHHHHHhhCCC-cEEEEEecccCcchhhhCCccccceEEEEeCCeE
Q 005108 615 VSSLEQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYPS-INFLKVDIDESPGVAHAENVRIVPTFKIYKNGSR 693 (714)
Q Consensus 615 i~~~e~~~~~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~-~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~ 693 (714)
..+.++|...+...++++|+||++||++|+.+.|.++++...+.+ +.|++||+++.+++++.|+|.++||+++|++|+.
T Consensus 120 ~l~~~~f~~~i~~~~~~lv~Fya~wC~~C~~~~p~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~g~~ 199 (780)
T 3apo_A 120 TLERREFDAAVNSGELWFVNFYSPGSSHSHDLAPTWREFAKEVDGLLRIGAVNCGDDRMLCRMKGVNSYPSLFIFRSGMA 199 (780)
T ss_dssp ECCHHHHHHHHTSSSCEEEEEECSSCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTCSSCC--------CEEEEECTTSC
T ss_pred eechHhHHhhhcCCCcEEEEEeCCCCcchhHhhHHHHHHHHHhcCceEEEEEeCCCcHHHHHHcCCceeeeEEEEeCCcE
Confidence 344567888888888999999999999999999999999999865 9999999999999999999999999999999999
Q ss_pred EEEEcCC-CHHHHHHHHhhh
Q 005108 694 MKEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 694 ~~~~~g~-~~~~l~~~~~~~ 712 (714)
+.++.|. +.+.|.++|.++
T Consensus 200 ~~~~~G~~~~~~l~~~l~~~ 219 (780)
T 3apo_A 200 AVKYNGDRSKESLVAFAMQH 219 (780)
T ss_dssp CEECCSCSCHHHHHHHHHTT
T ss_pred eeEecCCCCHHHHHHHHHHh
Confidence 9999999 999999999875
|
| >3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.06 E-value=3.5e-10 Score=103.88 Aligned_cols=85 Identities=11% Similarity=0.062 Sum_probs=74.8
Q ss_pred CCceEEEeecCCCccccc-cchHHHHHHhhCCC--cEEEEEec----------------------------ccCcc----
Q 005108 628 PGVSVVHFKSASNLHCKQ-ISPYVETLCGRYPS--INFLKVDI----------------------------DESPG---- 672 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~-~~p~l~~l~~~~~~--~~~~~vd~----------------------------d~~~~---- 672 (714)
.++++|+||++||++|+. +.|.+.++..+|++ +.|+.|++ +....
T Consensus 30 gk~vlv~F~a~~C~~C~~e~~~~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 109 (160)
T 3lor_A 30 GKVVVVEVFQMLCPGCVNHGVPQAQKIHRMIDESQVQVIGLHSVFEHHDVMTPEALKVFIDEFGIKFPVAVDMPREGQRI 109 (160)
T ss_dssp TSEEEEEEECTTCHHHHHTHHHHHHHHHHHSCTTTEEEEEEECCCSCGGGSCHHHHHHHHHHTTCCSCEEEECCCTTCSS
T ss_pred CCEEEEEEEcCCCcchhhhhhHHHHHHHHHhCcCCcEEEEEeccccccccCCHHHHHHHHHHcCCCCcEEECCccccchh
Confidence 568999999999999999 59999999999974 89999885 33344
Q ss_pred --hhhhCCccccceEEEE-eCCeEEEEEcCC-CHHHHHHHHhhh
Q 005108 673 --VAHAENVRIVPTFKIY-KNGSRMKEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 673 --l~~~~~v~~~Pt~~~~-~~G~~~~~~~g~-~~~~l~~~~~~~ 712 (714)
+++.|+|.++|+++++ ++|+++.++.|. +.+.|++.|+++
T Consensus 110 ~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~l 153 (160)
T 3lor_A 110 PSTMKKYRLEGTPSIILADRKGRIRQVQFGQVDDFVLGLLLGSL 153 (160)
T ss_dssp CHHHHHTTCCSSSEEEEECTTSBEEEEEESCCCHHHHHHHHHHH
T ss_pred hhHHHhcccCccceEEEECCCCcEEEEecCcCCHHHHHHHHHHH
Confidence 8999999999999888 799999999999 999999998875
|
| >3ira_A Conserved protein; methanosarcina mazei,structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 2.10A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.04 E-value=6.7e-11 Score=108.72 Aligned_cols=81 Identities=16% Similarity=0.119 Sum_probs=65.7
Q ss_pred hhHHhhhccCCCceEEEeecCCCccccccchH-H--HHHHhhCC-CcEEEEEecccCcchhhhC--------CccccceE
Q 005108 618 LEQFRAAVSLPGVSVVHFKSASNLHCKQISPY-V--ETLCGRYP-SINFLKVDIDESPGVAHAE--------NVRIVPTF 685 (714)
Q Consensus 618 ~e~~~~~i~~~~~~vv~f~a~~c~~C~~~~p~-l--~~l~~~~~-~~~~~~vd~d~~~~l~~~~--------~v~~~Pt~ 685 (714)
.+.+..+...+++++|+||++||++|+.+.|. + .++...+. ++.+++||+|+.++++..| +|.++||+
T Consensus 29 ~ea~~~A~~~~KpVlvdF~A~WC~~Ck~m~~~~f~~~~va~~l~~~fv~ikVD~de~~~l~~~y~~~~q~~~gv~g~Pt~ 108 (173)
T 3ira_A 29 EEAFEKARKENKPVFLSIGYSTCHWCHMMAHESFEDEEVAGLMNEAFVSIKVDREERPDIDNIYMTVCQIILGRGGWPLN 108 (173)
T ss_dssp HHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHTTTCHHHHHHHHHHCEEEEEETTTCHHHHHHHHHHHHHHHSCCCSSEE
T ss_pred HHHHHHHHHhCCCEEEecccchhHhhccccccccCCHHHHHHHHhcCceeeeCCcccCcHHHHHHHHHHHHcCCCCCcce
Confidence 35566666678899999999999999998882 2 34444332 5889999999999999988 99999999
Q ss_pred EEE-eCCeEEEEEc
Q 005108 686 KIY-KNGSRMKEIV 698 (714)
Q Consensus 686 ~~~-~~G~~~~~~~ 698 (714)
++| ++|+++....
T Consensus 109 v~l~~dG~~v~~~t 122 (173)
T 3ira_A 109 IIMTPGKKPFFAGT 122 (173)
T ss_dssp EEECTTSCEEEEES
T ss_pred eeECCCCCceeeee
Confidence 999 5999998643
|
| >3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=99.03 E-value=3.3e-10 Score=104.64 Aligned_cols=86 Identities=17% Similarity=0.236 Sum_probs=76.8
Q ss_pred CCCceEEEeecCCCccccccchHHHHHHhhCCC--cEEEEEecccCcchhhhC---------------------------
Q 005108 627 LPGVSVVHFKSASNLHCKQISPYVETLCGRYPS--INFLKVDIDESPGVAHAE--------------------------- 677 (714)
Q Consensus 627 ~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~--~~~~~vd~d~~~~l~~~~--------------------------- 677 (714)
..+++++.||++||++|+.+.|.+.++..++++ +.|+.|++++.++..+.|
T Consensus 33 ~gk~vlv~f~~~~C~~C~~~~~~l~~l~~~~~~~~v~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (165)
T 3or5_A 33 KGKAYIVNFFATWCPPCRSEIPDMVQVQKTWASRGFTFVGIAVNEQLPNVKNYMKTQGIIYPVMMATPELIRAFNGYIDG 112 (165)
T ss_dssp TTCEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTTEEEEEEECSCCHHHHHHHHHHHTCCSCEEECCHHHHHHHHTTSTT
T ss_pred CCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHHHHcCCCCceEecCHHHHHHHhhhhcc
Confidence 346899999999999999999999999999874 899999999877766666
Q ss_pred CccccceEEEE-eCCeEEEEEcCC-CHHHHHHHHhhh
Q 005108 678 NVRIVPTFKIY-KNGSRMKEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 678 ~v~~~Pt~~~~-~~G~~~~~~~g~-~~~~l~~~~~~~ 712 (714)
+|.++|+++++ ++|+++.++.|. +.++|++.|+++
T Consensus 113 ~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~ 149 (165)
T 3or5_A 113 GITGIPTSFVIDASGNVSGVIVGPRSKADFDRIVKMA 149 (165)
T ss_dssp CSCSSSEEEEECTTSBEEEEECSCCCHHHHHHHHHHH
T ss_pred CCCCCCeEEEECCCCcEEEEEcCCCCHHHHHHHHHHH
Confidence 89999998888 999999999998 999999998875
|
| >3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.03 E-value=2.9e-10 Score=102.79 Aligned_cols=85 Identities=13% Similarity=0.169 Sum_probs=74.3
Q ss_pred CCCceEEEeecCCCccccccchHHHHHHhhCCC--cEEEEEecccCcc-------------------------hhhhCCc
Q 005108 627 LPGVSVVHFKSASNLHCKQISPYVETLCGRYPS--INFLKVDIDESPG-------------------------VAHAENV 679 (714)
Q Consensus 627 ~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~--~~~~~vd~d~~~~-------------------------l~~~~~v 679 (714)
..+++++.||++||++|+...|.+.++..++++ +.|+.|++++.++ ++..|+|
T Consensus 30 ~gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i 109 (148)
T 3hcz_A 30 QAKYTILFFWDSQCGHCQQETPKLYDWWLKNRAKGIQVYAANIERKDEEWLKFIRSKKIGGWLNVRDSKNHTDFKITYDI 109 (148)
T ss_dssp CCSEEEEEEECGGGCTTCSHHHHHHHHHHHHGGGTEEEEEEECCSSSHHHHHHHHHHTCTTSEEEECTTCCCCHHHHHCC
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHhccCCEEEEEEEecCCHHHHHHHHHHcCCCCceEEeccccchhHHHhcCc
Confidence 356899999999999999999999999999864 9999999998776 9999999
Q ss_pred cccceEEEE-eCCeEEEEEcCC-CHHHHHHHHhh
Q 005108 680 RIVPTFKIY-KNGSRMKEIVCP-SRDMLEHSVRH 711 (714)
Q Consensus 680 ~~~Pt~~~~-~~G~~~~~~~g~-~~~~l~~~~~~ 711 (714)
.++|+++++ ++|+++.+..|. ..+.+.+.|.+
T Consensus 110 ~~~P~~~lid~~G~i~~~~~g~~~~~~~l~~l~~ 143 (148)
T 3hcz_A 110 YATPVLYVLDKNKVIIAKRIGYENLDDFLVQYEK 143 (148)
T ss_dssp CSSCEEEEECTTCBEEEESCCGGGHHHHHHHHHH
T ss_pred CCCCEEEEECCCCcEEEecCCHHHHHHHHHHHHH
Confidence 999999999 999999999888 66666655543
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.03 E-value=3.9e-10 Score=94.01 Aligned_cols=89 Identities=18% Similarity=0.261 Sum_probs=74.8
Q ss_pred HHHhHHhhCcCHHHHHHHHHHhhccCCCCHH-HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcc
Q 005108 485 ARGNDLFKSERFTEACQAYGEGLRFDPSNSV-LYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEK 563 (714)
Q Consensus 485 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 563 (714)
.+|..+...|++++|+..|+++++.+|++.. +++.+|.+|..+|++++|++.|+++++++|++..++.. +.
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~ 76 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KM 76 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HH
Confidence 4588888889999999999999998888888 88899999999999999999999999999888877643 67
Q ss_pred HHHHHHHHHHHHHhCCCC
Q 005108 564 WADAVRDFEVLRRELPDD 581 (714)
Q Consensus 564 ~~eA~~~~~~al~~~p~~ 581 (714)
+.+++..|+++...+|++
T Consensus 77 ~~~a~~~~~~~~~~~p~~ 94 (99)
T 2kc7_A 77 VMDILNFYNKDMYNQLEH 94 (99)
T ss_dssp HHHHHHHHCCTTHHHHCC
T ss_pred HHHHHHHHHHHhccCccc
Confidence 788888888887777765
|
| >4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=99.03 E-value=5.2e-10 Score=99.54 Aligned_cols=87 Identities=17% Similarity=0.143 Sum_probs=76.4
Q ss_pred CCCceEEEeecCCCccccccchHHHHHHhhCC-CcEEEEEec----------------------------ccCcchhhhC
Q 005108 627 LPGVSVVHFKSASNLHCKQISPYVETLCGRYP-SINFLKVDI----------------------------DESPGVAHAE 677 (714)
Q Consensus 627 ~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~-~~~~~~vd~----------------------------d~~~~l~~~~ 677 (714)
..+++++.||++||++|+...|.+.++..+++ ++.++.|+. +....+++.|
T Consensus 21 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 100 (138)
T 4evm_A 21 KGKKVYLKFWASWCSICLASLPDTDEIAKEAGDDYVVLTVVSPGHKGEQSEADFKNWYKGLDYKNLPVLVDPSGKLLETY 100 (138)
T ss_dssp TTSEEEEEECCTTCHHHHHHHHHHHHHHHTCTTTEEEEEEECTTSTTCCCHHHHHHHHTTCCCTTCCEEECTTCHHHHHT
T ss_pred CCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhCCCcEEEEEEcCCCCchhhHHHHHHHHhhcCCCCeeEEECcchHHHHHc
Confidence 34689999999999999999999999999986 488888842 3456789999
Q ss_pred CccccceEEEE-eCCeEEEEEcCC-CHHHHHHHHhhhc
Q 005108 678 NVRIVPTFKIY-KNGSRMKEIVCP-SRDMLEHSVRHYS 713 (714)
Q Consensus 678 ~v~~~Pt~~~~-~~G~~~~~~~g~-~~~~l~~~~~~~~ 713 (714)
+|.++|+++++ ++|+++.+..|. +.++|.+.|++++
T Consensus 101 ~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~l~ 138 (138)
T 4evm_A 101 GVRSYPTQAFIDKEGKLVKTHPGFMEKDAILQTLKELA 138 (138)
T ss_dssp TCCSSSEEEEECTTCCEEEEEESCCCHHHHHHHHHHCC
T ss_pred CcccCCeEEEECCCCcEEEeecCCCcHHHHHHHHHhhC
Confidence 99999999999 999999999998 9999999998763
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.03 E-value=1.9e-09 Score=117.06 Aligned_cols=139 Identities=13% Similarity=0.079 Sum_probs=115.6
Q ss_pred hhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhc-----cCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHH
Q 005108 431 LSEAYTFFVRAQIEMALGRFENAVTAAEKAGQ-----IDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGE 505 (714)
Q Consensus 431 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-----~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~ 505 (714)
+..+......+..+..+|+|++|+.+++++++ +.++++.....++++ |.+|..+|+|++|+.+|++
T Consensus 306 l~~a~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nL---------a~~y~~~g~~~eA~~~~~~ 376 (490)
T 3n71_A 306 IQFSKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIA---------SEVLSYLQAYEEASHYARR 376 (490)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHH---------HHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH---------HHHHHHhcCHHHHHHHHHH
Confidence 33344455666778889999999999999986 467888877766554 9999999999999999999
Q ss_pred hhcc-----CCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHhccHHHHHH
Q 005108 506 GLRF-----DPSN---SVLYCNRAACWFKLGQWERSVEDSNQALLI-----QPNYT---KALLRRAASNSKLEKWADAVR 569 (714)
Q Consensus 506 al~~-----~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~---~~~~~la~~~~~~g~~~eA~~ 569 (714)
++++ .|++ ...+++||.+|..+|++++|+.+|++|+++ .|+++ +....++.++..++++++|..
T Consensus 377 aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~ 456 (490)
T 3n71_A 377 MVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEF 456 (490)
T ss_dssp HHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9975 3444 678999999999999999999999999974 67765 556788999999999999999
Q ss_pred HHHHHHHhC
Q 005108 570 DFEVLRREL 578 (714)
Q Consensus 570 ~~~~al~~~ 578 (714)
.|.++.+..
T Consensus 457 ~~~~~~~~~ 465 (490)
T 3n71_A 457 MYHKMREAA 465 (490)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999986543
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=99.02 E-value=1.7e-09 Score=90.51 Aligned_cols=84 Identities=14% Similarity=0.142 Sum_probs=72.1
Q ss_pred cCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC--CHHHHH
Q 005108 509 FDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPD--DNEIAE 586 (714)
Q Consensus 509 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~--~~~~~~ 586 (714)
.+|+++.+++.+|.+|..+|++++|+..|+++++++|++..+|+.+|.+|..+|++++|++.|++++++.|. +.....
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~ 81 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLS 81 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHH
Confidence 478999999999999999999999999999999999999999999999999999999999999999998764 344444
Q ss_pred HHHHHH
Q 005108 587 SLFHAQ 592 (714)
Q Consensus 587 ~L~~~~ 592 (714)
.+..+.
T Consensus 82 ~l~~~l 87 (100)
T 3ma5_A 82 ELQDAK 87 (100)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
|
| >3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold, sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A {Trypanosoma brucei} PDB: 3qd9_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=1.7e-10 Score=122.32 Aligned_cols=83 Identities=12% Similarity=0.163 Sum_probs=69.7
Q ss_pred hhhHHhhhccCC--CceEEEeecCCCccccccchHHHHHHhhCC---------CcEEEEEecccCcchhhhCCccccceE
Q 005108 617 SLEQFRAAVSLP--GVSVVHFKSASNLHCKQISPYVETLCGRYP---------SINFLKVDIDESPGVAHAENVRIVPTF 685 (714)
Q Consensus 617 ~~e~~~~~i~~~--~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~---------~~~~~~vd~d~~~~l~~~~~v~~~Pt~ 685 (714)
+.++|...+... ++++|+||++||++|+.+.|.++++..+++ .+.|+.||+++.++++++|+|.++||+
T Consensus 29 t~~~F~~~l~~~~~k~VlV~FyA~WC~pCk~~~P~l~~la~~~~~~~g~~~~~~v~f~~VD~d~~~~la~~y~V~~~PTl 108 (470)
T 3qcp_A 29 SGDDFSRVHRVAPLCPWIVLFYNDGCGACRRYASTFSKFAGGLKVEHGKDALQIATAAAVNCASEVDLCRKYDINFVPRL 108 (470)
T ss_dssp SCSCGGGTCTTGGGSCEEEEEECTTCHHHHHHHHHHHHHHHTSCCSSCSSGGGGCEEEEEETTTCHHHHHHTTCCSSCEE
T ss_pred CHHHHHHHHHhCCCCeEEEEEECCCCHHHHHHHHHHHHHHHHHhhhcccccCceEEEEEEECCCCHHHHHHcCCCccCeE
Confidence 335677776543 589999999999999999999999999986 389999999999999999999999999
Q ss_pred EEEeCCeE--EEEEcC
Q 005108 686 KIYKNGSR--MKEIVC 699 (714)
Q Consensus 686 ~~~~~G~~--~~~~~g 699 (714)
++|++|.. +.++.|
T Consensus 109 ilf~~gg~~~~~~y~G 124 (470)
T 3qcp_A 109 FFFYPRDSCRSNEECG 124 (470)
T ss_dssp EEEEESSCCCTTSCCC
T ss_pred EEEECCCceEEEEeeC
Confidence 99975542 344445
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=99.01 E-value=2.9e-09 Score=86.79 Aligned_cols=82 Identities=18% Similarity=0.318 Sum_probs=61.1
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005108 513 NSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAESLFHAQ 592 (714)
Q Consensus 513 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~L~~~~ 592 (714)
+...++.+|.++...|++++|+.+|+++++++|++..+++.+|.++..+|++++|+.+|+++++++|++..+...+..++
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 45667777777777777777777777777777777777777777777777777777777777777777777777666655
Q ss_pred HH
Q 005108 593 VS 594 (714)
Q Consensus 593 ~~ 594 (714)
..
T Consensus 88 ~~ 89 (91)
T 1na3_A 88 QK 89 (91)
T ss_dssp HH
T ss_pred Hh
Confidence 43
|
| >2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP} | Back alignment and structure |
|---|
Probab=98.99 E-value=5.5e-10 Score=101.66 Aligned_cols=83 Identities=17% Similarity=0.250 Sum_probs=70.8
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhCCC--cEEEEEeccc-------------------------CcchhhhCCcc
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRYPS--INFLKVDIDE-------------------------SPGVAHAENVR 680 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~--~~~~~vd~d~-------------------------~~~l~~~~~v~ 680 (714)
.+++++.||++||++|+...|.+.++..++++ +.++.|+++. ...+++.|+|.
T Consensus 29 gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~ 108 (152)
T 2lrn_A 29 GKYVLVDFWFAGCSWCRKETPYLLKTYNAFKDKGFTIYGVSTDRREEDWKKAIEEDKSYWNQVLLQKDDVKDVLESYCIV 108 (152)
T ss_dssp TSEEEEEEECTTCTTHHHHHHHHHHHHHHHTTTTEEEEEEECCSCHHHHHHHHHHHTCCSEEEEECHHHHHHHHHHTTCC
T ss_pred CCEEEEEEECCCChhHHHHHHHHHHHHHHhccCCeEEEEEEccCCHHHHHHHHHHhCCCCeEEecccchhHHHHHHhCCC
Confidence 46899999999999999999999999998864 8999999987 46789999999
Q ss_pred ccceEEEE-eCCeEEEEEcCCCHHHHHHHHhhh
Q 005108 681 IVPTFKIY-KNGSRMKEIVCPSRDMLEHSVRHY 712 (714)
Q Consensus 681 ~~Pt~~~~-~~G~~~~~~~g~~~~~l~~~~~~~ 712 (714)
++|+++++ ++|+++.+..+ .++|++.|+++
T Consensus 109 ~~P~~~lid~~G~i~~~~~~--~~~l~~~l~~l 139 (152)
T 2lrn_A 109 GFPHIILVDPEGKIVAKELR--GDDLYNTVEKF 139 (152)
T ss_dssp SSCEEEEECTTSEEEEECCC--TTHHHHHHHHH
T ss_pred cCCeEEEECCCCeEEEeeCC--HHHHHHHHHHH
Confidence 99999888 99999998653 35566666553
|
| >3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls} | Back alignment and structure |
|---|
Probab=98.99 E-value=6.7e-10 Score=100.99 Aligned_cols=85 Identities=19% Similarity=0.312 Sum_probs=75.2
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhCCC--cEEEEEecccCc----------------------chhhhCCccccc
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRYPS--INFLKVDIDESP----------------------GVAHAENVRIVP 683 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~--~~~~~vd~d~~~----------------------~l~~~~~v~~~P 683 (714)
.+++++.||++||+.|+...|.+.++..++++ +.++.|+++... ++++.|+|.++|
T Consensus 28 gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P 107 (152)
T 3gl3_A 28 GSVVYLDFWASWCGPCRQSFPWMNQMQAKYKAKGFQVVAVNLDAKTGDAMKFLAQVPAEFTVAFDPKGQTPRLYGVKGMP 107 (152)
T ss_dssp TSEEEEEEECTTCTHHHHHHHHHHHHHHHHGGGTEEEEEEECCSSHHHHHHHHHHSCCCSEEEECTTCHHHHHTTCCSSS
T ss_pred CCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEECCCCHHHHHHHHHHcCCCCceeECCcchhHHHcCCCCCC
Confidence 46899999999999999999999999999864 899999988654 678899999999
Q ss_pred eEEEE-eCCeEEEEEcCC---CHHHHHHHHhhh
Q 005108 684 TFKIY-KNGSRMKEIVCP---SRDMLEHSVRHY 712 (714)
Q Consensus 684 t~~~~-~~G~~~~~~~g~---~~~~l~~~~~~~ 712 (714)
+++++ ++|+++.+..|. +.++|++.|+++
T Consensus 108 ~~~lid~~G~i~~~~~g~~~~~~~~l~~~i~~~ 140 (152)
T 3gl3_A 108 TSFLIDRNGKVLLQHVGFRPADKEALEQQILAA 140 (152)
T ss_dssp EEEEECTTSBEEEEEESCCTTTHHHHHHHHHHH
T ss_pred eEEEECCCCCEEEEEccCCCcCHHHHHHHHHHH
Confidence 98877 999999999996 557899988875
|
| >2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal thioredoxin-like domain, N-terminal beta-sheet, fingerprint rigion, oxidoreductase; 1.90A {Escherichia coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A | Back alignment and structure |
|---|
Probab=98.99 E-value=4.2e-10 Score=104.38 Aligned_cols=84 Identities=13% Similarity=0.119 Sum_probs=71.6
Q ss_pred CCCceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEec-----------------------ccCcchhhhCCccccc
Q 005108 627 LPGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDI-----------------------DESPGVAHAENVRIVP 683 (714)
Q Consensus 627 ~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~-----------------------d~~~~l~~~~~v~~~P 683 (714)
..++++++||++||++|+.+.|.++++..+ ++.++.|++ |....++..|+|.++|
T Consensus 50 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~--~v~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P 127 (168)
T 2b1k_A 50 QGKPVLLNVWATWCPTCRAEHQYLNQLSAQ--GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYGAP 127 (168)
T ss_dssp CSSCEEEEEECTTCHHHHHHHHHHHHHHHT--TCCEEEEEESCCHHHHHHHHHHHCCCCSEEEEETTCHHHHHHTCCSSS
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHC--CCEEEEEECCCChHHHHHHHHHcCCCCceeeECcchHHHHHcCccccC
Confidence 466899999999999999999999999887 788888884 4566789999999999
Q ss_pred eE-EEEeCCeEEEEEcCC-CHHHHHHHHhhh
Q 005108 684 TF-KIYKNGSRMKEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 684 t~-~~~~~G~~~~~~~g~-~~~~l~~~~~~~ 712 (714)
++ +|.++|+++.++.|. +.+.+++.|+++
T Consensus 128 ~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~ 158 (168)
T 2b1k_A 128 ETFLIDGNGIIRYRHAGDLNPRVWEEEIKPL 158 (168)
T ss_dssp EEEEECTTSBEEEEEESCCCHHHHHHTTHHH
T ss_pred EEEEECCCCeEEEEEeCCCCHHHHHHHHHHH
Confidence 55 555999999999998 888888877653
|
| >3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A | Back alignment and structure |
|---|
Probab=98.99 E-value=5.1e-10 Score=122.75 Aligned_cols=96 Identities=19% Similarity=0.206 Sum_probs=83.5
Q ss_pred hhhHHhhhccC-CCceEEEeecCCCccccccchHHHHHHhhCC---CcEEEEEecccCcchhhhCCccccceEEEEeCCe
Q 005108 617 SLEQFRAAVSL-PGVSVVHFKSASNLHCKQISPYVETLCGRYP---SINFLKVDIDESPGVAHAENVRIVPTFKIYKNGS 692 (714)
Q Consensus 617 ~~e~~~~~i~~-~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~---~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~ 692 (714)
..+.|...+.. .+.++|+||++||++|+.+.|.++++...+. ++.|+++|++.+ +++..|+|.++||+++|++|.
T Consensus 358 ~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~~~v~~~~id~~~~-~~~~~~~v~~~Pt~~~~~~~~ 436 (481)
T 3f8u_A 358 VAENFDEIVNNENKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDATAN-DVPSPYEVRGFPTIYFSPANK 436 (481)
T ss_dssp CTTTHHHHHTCTTCEEEEEEECTTBHHHHHHHHHHHHHHHHTTTCSSEEEEEEETTSS-CCCTTCCCCSSSEEEEECTTC
T ss_pred cccCHHHHhhcCCCcEEEEEecCcChhHHHhhHHHHHHHHHhccCCCEEEEEEECCch-hhHhhCCCcccCEEEEEeCCC
Confidence 34566665544 6789999999999999999999999999886 488999999988 899999999999999998887
Q ss_pred E--EEEEcCC-CHHHHHHHHhhhc
Q 005108 693 R--MKEIVCP-SRDMLEHSVRHYS 713 (714)
Q Consensus 693 ~--~~~~~g~-~~~~l~~~~~~~~ 713 (714)
. +.++.|. +.+.|.++|+++.
T Consensus 437 ~~~~~~~~G~~~~~~l~~~l~~~~ 460 (481)
T 3f8u_A 437 KLNPKKYEGGRELSDFISYLQREA 460 (481)
T ss_dssp TTSCEECCSCCSHHHHHHHHHHHC
T ss_pred eEeeeEeCCCCCHHHHHHHHHHhc
Confidence 6 6788898 9999999998864
|
| >3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.98 E-value=8.5e-10 Score=99.70 Aligned_cols=84 Identities=13% Similarity=0.168 Sum_probs=73.7
Q ss_pred CCCceEEEeecCCCccccccchHHHHHHhhC-CC--cEEEEEeccc-------------------------CcchhhhCC
Q 005108 627 LPGVSVVHFKSASNLHCKQISPYVETLCGRY-PS--INFLKVDIDE-------------------------SPGVAHAEN 678 (714)
Q Consensus 627 ~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~-~~--~~~~~vd~d~-------------------------~~~l~~~~~ 678 (714)
..+++++.||++||++|+...|.+.++..++ ++ +.|+.|+++. ...++..|+
T Consensus 32 ~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 111 (148)
T 3fkf_A 32 RNRYLLLNFWASWCDPQPEANAELKRLNKEYKKNKNFAMLGISLDIDREAWETAIKKDTLSWDQVCDFTGLSSETAKQYA 111 (148)
T ss_dssp TTSEEEEEEECGGGCCCHHHHHHHHHHHHHTTTCTTEEEEEEECCSCHHHHHHHHHHTTCCSEEECCSCGGGCHHHHHTT
T ss_pred CCcEEEEEEECCCCHHHHHHhHHHHHHHHHhcCCCCeEEEEEECCCCHHHHHHHHHHcCCCceEEEccCCcchHHHHhcC
Confidence 3568999999999999999999999999999 53 8999998886 347899999
Q ss_pred ccccceEEEE-eCCeEEEEEcCCCHHHHHHHHhhh
Q 005108 679 VRIVPTFKIY-KNGSRMKEIVCPSRDMLEHSVRHY 712 (714)
Q Consensus 679 v~~~Pt~~~~-~~G~~~~~~~g~~~~~l~~~~~~~ 712 (714)
|.++|+++++ ++|+++.+.. +.+.|++.|+++
T Consensus 112 v~~~P~~~lid~~G~i~~~~~--~~~~l~~~l~~l 144 (148)
T 3fkf_A 112 ILTLPTNILLSPTGKILARDI--QGEALTGKLKEL 144 (148)
T ss_dssp CCSSSEEEEECTTSBEEEESC--CHHHHHHHHHHH
T ss_pred CCCcCEEEEECCCCeEEEecC--CHHHHHHHHHHH
Confidence 9999999988 9999998876 788888888764
|
| >3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A | Back alignment and structure |
|---|
Probab=98.97 E-value=7e-10 Score=116.80 Aligned_cols=93 Identities=20% Similarity=0.277 Sum_probs=80.0
Q ss_pred hHHhhhc-cCCCceEEEeecCCCccccccchHHHHHHhhCCC---cEEEEEecccCcchhhhCCccccceEEEEeCC--e
Q 005108 619 EQFRAAV-SLPGVSVVHFKSASNLHCKQISPYVETLCGRYPS---INFLKVDIDESPGVAHAENVRIVPTFKIYKNG--S 692 (714)
Q Consensus 619 e~~~~~i-~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~---~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G--~ 692 (714)
+.|...+ ...+.++|.||++||++|+.+.|.++++...+.+ +.+++||++.+. +..|+|.++||+++|++| +
T Consensus 257 ~~f~~~~~~~~k~~lv~f~a~wC~~C~~~~p~~~~la~~~~~~~~v~~~~vd~~~~~--~~~~~v~~~Pt~~~~~~~~~~ 334 (361)
T 3uem_A 257 KNFEDVAFDEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDSTANE--VEAVKVHSFPTLKFFPASADR 334 (361)
T ss_dssp TTHHHHHTCTTCEEEEEEECTTCHHHHHHHHHHHHHHHHTTTCSSEEEEEEETTTCB--CSSCCCCSSSEEEEECSSSSC
T ss_pred CchhhhcccCCCcEEEEEecCcCHhHHHHHHHHHHHHHHhccCCcEEEEEEECCccc--hhhcCCcccCeEEEEECCCCc
Confidence 4555544 5677999999999999999999999999999864 889999998877 789999999999999655 6
Q ss_pred EEEEEcCC-CHHHHHHHHhhhc
Q 005108 693 RMKEIVCP-SRDMLEHSVRHYS 713 (714)
Q Consensus 693 ~~~~~~g~-~~~~l~~~~~~~~ 713 (714)
.+.++.|. +.+.|.++|++.+
T Consensus 335 ~~~~~~G~~~~~~l~~~l~~~~ 356 (361)
T 3uem_A 335 TVIDYNGERTLDGFKKFLESGG 356 (361)
T ss_dssp CCEECCSCSSHHHHHHHHTTTS
T ss_pred ceeEecCCCCHHHHHHHHHhcC
Confidence 67888898 9999999998764
|
| >1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold, cytochrome C maturation, atomic resolution oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=98.97 E-value=8.7e-10 Score=100.72 Aligned_cols=84 Identities=17% Similarity=0.226 Sum_probs=72.5
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecc-----------------------cCcchhhhCCccccce
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDID-----------------------ESPGVAHAENVRIVPT 684 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d-----------------------~~~~l~~~~~v~~~Pt 684 (714)
.+++++.||++||++|+.+.|.+.++..+ +++.|+.|+++ ....+++.|+|.++|+
T Consensus 42 gk~~ll~f~~~~C~~C~~~~~~l~~l~~~-~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~ 120 (156)
T 1kng_A 42 GKVSLVNVWASWCVPCHDEAPLLTELGKD-KRFQLVGINYKDAADNARRFLGRYGNPFGRVGVDANGRASIEWGVYGVPE 120 (156)
T ss_dssp TSCEEEEEECTTCHHHHHHHHHHHHHTTC-TTSEEEEEEESCCHHHHHHHHHHHCCCCSEEEEETTSHHHHHTTCCSSCE
T ss_pred CCEEEEEEEcccCHhHHHHHHHHHHHHhc-CCeEEEEEECCCCHHHHHHHHHHcCCCCceeeeCchhHHHHhcCcCccCe
Confidence 56899999999999999999999999887 66999988864 3557888999999997
Q ss_pred EEEE-eCCeEEEEEcCC-CHHHHHHHHhhh
Q 005108 685 FKIY-KNGSRMKEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 685 ~~~~-~~G~~~~~~~g~-~~~~l~~~~~~~ 712 (714)
++++ ++|+++.++.|. +.+.|++.|+++
T Consensus 121 ~~~id~~G~i~~~~~g~~~~~~l~~~l~~~ 150 (156)
T 1kng_A 121 TFVVGREGTIVYKLVGPITPDNLRSVLLPQ 150 (156)
T ss_dssp EEEECTTSBEEEEEESCCCHHHHHHTHHHH
T ss_pred EEEEcCCCCEEEEEeCCCCHHHHHHHHHHH
Confidence 6555 999999999999 888888888764
|
| >1wjk_A C330018D20RIK protein; glutaredoxin, thioredoxin fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=98.96 E-value=3.8e-10 Score=94.26 Aligned_cols=78 Identities=18% Similarity=0.191 Sum_probs=66.7
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecc--cCcchhhhCCccccceEEEEeCCeEEEEEcCCCHHHH
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDID--ESPGVAHAENVRIVPTFKIYKNGSRMKEIVCPSRDML 705 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d--~~~~l~~~~~v~~~Pt~~~~~~G~~~~~~~g~~~~~l 705 (714)
..+.++.|+++||++|+++.+.|+++.. ++.|..||++ +.++++..|+ +.+|++ +.+|+.+ .+.|++.++|
T Consensus 15 ~~~~v~~f~~~~C~~C~~~~~~L~~l~~---~i~~~~vdi~~~~~~el~~~~g-~~vP~l--~~~g~~~-~~~g~~~~~l 87 (100)
T 1wjk_A 15 ALPVLTLFTKAPCPLCDEAKEVLQPYKD---RFILQEVDITLPENSTWYERYK-FDIPVF--HLNGQFL-MMHRVNTSKL 87 (100)
T ss_dssp CCCEEEEEECSSCHHHHHHHHHTSTTSS---SSEEEEEETTSSTTHHHHHHSS-SSCSEE--EESSSEE-EESSCCHHHH
T ss_pred CCCEEEEEeCCCCcchHHHHHHHHHhhh---CCeEEEEECCCcchHHHHHHHC-CCCCEE--EECCEEE-EecCCCHHHH
Confidence 3467889999999999999999987653 3889999999 7889999999 999976 5799876 5667799999
Q ss_pred HHHHhhh
Q 005108 706 EHSVRHY 712 (714)
Q Consensus 706 ~~~~~~~ 712 (714)
+++|+++
T Consensus 88 ~~~l~~~ 94 (100)
T 1wjk_A 88 EKQLRKL 94 (100)
T ss_dssp HHHHHSS
T ss_pred HHHHHHH
Confidence 9999875
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.96 E-value=1.3e-08 Score=90.83 Aligned_cols=119 Identities=12% Similarity=-0.018 Sum_probs=104.6
Q ss_pred CcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHH-
Q 005108 448 GRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFK- 526 (714)
Q Consensus 448 g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~- 526 (714)
+++++|+++|+++.+....... + |.+|...+.+++|+++|+++.+. .++.+++++|.+|..
T Consensus 9 ~d~~~A~~~~~~aa~~g~~~a~----l------------g~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G 70 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEMFGC----L------------SLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENG 70 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCTTHH----H------------HHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHC
T ss_pred cCHHHHHHHHHHHHcCCCHhhh----H------------HHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcC
Confidence 5789999999999988754443 4 88899999999999999999987 689999999999999
Q ss_pred ---hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hccHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005108 527 ---LGQWERSVEDSNQALLIQPNYTKALLRRAASNSK----LEKWADAVRDFEVLRRELPDDNEIAESL 588 (714)
Q Consensus 527 ---~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~eA~~~~~~al~~~p~~~~~~~~L 588 (714)
.+++++|+++|+++.+. .++.+++++|.+|.. .+++++|+++|+++.+.. ++.....|
T Consensus 71 ~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~A~~~l 135 (138)
T 1klx_A 71 KYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG--SEDACGIL 135 (138)
T ss_dssp SSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHC
T ss_pred CCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC--CHHHHHHH
Confidence 89999999999999987 679999999999999 899999999999999874 45554443
|
| >3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.95 E-value=1.1e-09 Score=98.40 Aligned_cols=82 Identities=13% Similarity=0.221 Sum_probs=70.0
Q ss_pred CCceEEEeecCCCccccccchHHHH---HHhhC--CCcEEEEEecccCcc------------------------hhhhCC
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVET---LCGRY--PSINFLKVDIDESPG------------------------VAHAEN 678 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~---l~~~~--~~~~~~~vd~d~~~~------------------------l~~~~~ 678 (714)
.++++++||++||++|+...|.+.+ +.+++ .++.++.|++|...+ ++..|+
T Consensus 31 gk~vll~F~a~wC~~C~~~~~~l~~~~~l~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 110 (142)
T 3eur_A 31 AEYTLLFINNPGCHACAEMIEGLKASPVINGFTAAKKLKVLSIYPDEELDEWKKHRNDFAKEWTNGYDKELVIKNKNLYD 110 (142)
T ss_dssp CSEEEEEECCSSSHHHHHHHHHHHHCHHHHHHHHTTSEEEEEEECSSCHHHHHHHGGGSCTTSEEEECTTCHHHHTTCSC
T ss_pred CCEEEEEEECCCCccHHHHHHHHhhhHHHHHHhccCCeEEEEEEcCCCHHHHHHHHHhcccccccccCccchhhhhhhcC
Confidence 4689999999999999999999999 88887 469999999887533 478999
Q ss_pred ccccceEEEE-eCCeEEEEEcCCCHHHHHHHHhh
Q 005108 679 VRIVPTFKIY-KNGSRMKEIVCPSRDMLEHSVRH 711 (714)
Q Consensus 679 v~~~Pt~~~~-~~G~~~~~~~g~~~~~l~~~~~~ 711 (714)
|.++|+++++ ++|+++.+..+ .++|+++|++
T Consensus 111 v~~~P~~~lid~~G~i~~~~~~--~~~l~~~l~e 142 (142)
T 3eur_A 111 LRAIPTLYLLDKNKTVLLKDAT--LQKVEQYLAE 142 (142)
T ss_dssp CTTCSEEEEECTTCBEEEEEEC--HHHHHHHHHC
T ss_pred CCcCCeEEEECCCCcEEecCCC--HHHHHHHHhC
Confidence 9999998888 99999988765 6888888763
|
| >3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15} | Back alignment and structure |
|---|
Probab=98.95 E-value=1.3e-09 Score=99.84 Aligned_cols=84 Identities=14% Similarity=0.264 Sum_probs=72.7
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhCC--CcEEEEEeccc-------------------CcchhhhCCccccceEE
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRYP--SINFLKVDIDE-------------------SPGVAHAENVRIVPTFK 686 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~--~~~~~~vd~d~-------------------~~~l~~~~~v~~~Pt~~ 686 (714)
.+++++.||++||+.|+...|.+.++..+++ ++.|+.|+++. ..++++.|+|.++|+++
T Consensus 41 gk~vll~F~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~ 120 (158)
T 3hdc_A 41 GKIVLVNFWASWCPYCRDEMPSMDRLVKSFPKGDLVVLAVNVEKRFPEKYRRAPVSFNFLSDATGQVQQRYGANRLPDTF 120 (158)
T ss_dssp TSEEEEEEECTTCHHHHHHHHHHHHHHHHSSTTSEEEEEEECSSSCCGGGGGCCCSCEEEECTTSHHHHHTTCCSSSEEE
T ss_pred CCEEEEEEECCcCHHHHHHHHHHHHHHHHcccCCeEEEEEeCCHHHHHHHHHcCCCceEEECchHHHHHHhCCCCcceEE
Confidence 4689999999999999999999999999997 69999999987 67899999999999977
Q ss_pred EE-eCCeEEEEEcCC---CHHHHHHHHhh
Q 005108 687 IY-KNGSRMKEIVCP---SRDMLEHSVRH 711 (714)
Q Consensus 687 ~~-~~G~~~~~~~g~---~~~~l~~~~~~ 711 (714)
++ ++|+++.++.|. +.+++.+.+++
T Consensus 121 lid~~G~i~~~~~G~~~~~~~~~~~~~~~ 149 (158)
T 3hdc_A 121 IVDRKGIIRQRVTGGIEWDAPKVVSYLKS 149 (158)
T ss_dssp EECTTSBEEEEEESCCCTTSHHHHHHHHT
T ss_pred EEcCCCCEEEEEeCCCccchHHHHHHHHh
Confidence 66 999999999998 44555555544
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=98.95 E-value=3.2e-09 Score=88.85 Aligned_cols=86 Identities=10% Similarity=0.137 Sum_probs=71.4
Q ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc--HHHHH
Q 005108 237 ICGGDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNY--WRAHQ 314 (714)
Q Consensus 237 ~~p~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~a~~ 314 (714)
.+|+++..++.+|.+++..|++++|+.+|+++++.+|+++.+|+.+|.+|..+|++++|+..|++++++.|.. .....
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~ 81 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLS 81 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHH
Confidence 3688899999999999999999999999999999999999999999999999999999999999999886643 34444
Q ss_pred HHHHHHHH
Q 005108 315 RLGSLLVR 322 (714)
Q Consensus 315 ~la~~~~~ 322 (714)
.+..++..
T Consensus 82 ~l~~~l~~ 89 (100)
T 3ma5_A 82 ELQDAKLK 89 (100)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444433
|
| >2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A | Back alignment and structure |
|---|
Probab=98.95 E-value=5.8e-10 Score=123.03 Aligned_cols=93 Identities=19% Similarity=0.235 Sum_probs=80.1
Q ss_pred hHHhhhc-cCCCceEEEeecCCCccccccchHHHHHHhhCC----CcEEEEEecccCcchhhhCCccccceEEEEeCCeE
Q 005108 619 EQFRAAV-SLPGVSVVHFKSASNLHCKQISPYVETLCGRYP----SINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSR 693 (714)
Q Consensus 619 e~~~~~i-~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~----~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~ 693 (714)
+.|...+ ...+.++|+||++||++|+.+.|.++++..+++ ++.++++|++.+... . |+|.++||+++|++|+.
T Consensus 366 ~~f~~~v~~~~k~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~v~~~~vd~~~~~~~-~-~~v~~~Pt~~~~~~G~~ 443 (504)
T 2b5e_A 366 KNHDEIVNDPKKDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKLDHTENDVR-G-VVIEGYPTIVLYPGGKK 443 (504)
T ss_dssp TTHHHHHHCTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHHHHCSSCEEEEEEGGGCCCS-S-CCCSSSSEEEEECCTTS
T ss_pred ccHHHhhccCCCCEEEEEECCCChhHHHHhHHHHHHHHHhhccCCcEEEEEecCCccccc-c-CCceecCeEEEEeCCce
Confidence 4566554 456789999999999999999999999998875 699999999887654 4 99999999999999987
Q ss_pred --EEEEcCC-CHHHHHHHHhhhc
Q 005108 694 --MKEIVCP-SRDMLEHSVRHYS 713 (714)
Q Consensus 694 --~~~~~g~-~~~~l~~~~~~~~ 713 (714)
+.++.|. +.+.|.++|+++.
T Consensus 444 ~~~~~~~G~~~~~~l~~~i~~~~ 466 (504)
T 2b5e_A 444 SESVVYQGSRSLDSLFDFIKENG 466 (504)
T ss_dssp CCCCBCCSCCCHHHHHHHHHHHC
T ss_pred ecceEecCCCCHHHHHHHHHhcC
Confidence 7788898 9999999998753
|
| >2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=98.94 E-value=1.2e-09 Score=99.54 Aligned_cols=86 Identities=21% Similarity=0.250 Sum_probs=75.0
Q ss_pred CCCceEEEeecCCCccccccchHHHHHHhhCC--CcEEEEEec-----------------------ccCcchhhhCCccc
Q 005108 627 LPGVSVVHFKSASNLHCKQISPYVETLCGRYP--SINFLKVDI-----------------------DESPGVAHAENVRI 681 (714)
Q Consensus 627 ~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~--~~~~~~vd~-----------------------d~~~~l~~~~~v~~ 681 (714)
..+++++.||++||+.|+...|.+.++..+++ ++.++.|++ +....+++.|+|..
T Consensus 27 ~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~ 106 (153)
T 2l5o_A 27 QGKVTLINFWFPSCPGCVSEMPKIIKTANDYKNKNFQVLAVAQPIDPIESVRQYVKDYGLPFTVMYDADKAVGQAFGTQV 106 (153)
T ss_dssp TTCEEEEEEECTTCTTHHHHHHHHHHHHHHGGGTTEEEEEEECTTSCHHHHHHHHHHTTCCSEEEECSSCHHHHHHTCCS
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHhccCCeEEEEEecCCCCHHHHHHHHHHcCCCceEEcCchHHHHHHcCCCc
Confidence 35689999999999999999999999999886 478876653 45667899999999
Q ss_pred cceEEEE-eCCeEEEEEcCC-CHHHHHHHHhhh
Q 005108 682 VPTFKIY-KNGSRMKEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 682 ~Pt~~~~-~~G~~~~~~~g~-~~~~l~~~~~~~ 712 (714)
+|+++++ ++|+++.++.|. +.+.|.+.|+++
T Consensus 107 ~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~l 139 (153)
T 2l5o_A 107 YPTSVLIGKKGEILKTYVGEPDFGKLYQEIDTA 139 (153)
T ss_dssp SSEEEEECSSSCCCEEEESSCCHHHHHHHHHHH
T ss_pred cCeEEEECCCCcEEEEEcCCCCHHHHHHHHHHH
Confidence 9999988 999999999998 999999998874
|
| >3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=98.94 E-value=1.7e-09 Score=99.91 Aligned_cols=85 Identities=19% Similarity=0.253 Sum_probs=74.5
Q ss_pred CCCceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecc------------------cC------------------
Q 005108 627 LPGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDID------------------ES------------------ 670 (714)
Q Consensus 627 ~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d------------------~~------------------ 670 (714)
..+++++.||+.||++|+...|.+.++..+++++.|+.|+++ +.
T Consensus 36 ~gk~~lv~F~~~~C~~C~~~~~~l~~l~~~~~~v~vv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (165)
T 3ha9_A 36 GGDVVILWFMAAWCPSCVYMADLLDRLTEKYREISVIAIDFWTAEALKALGLNKPGYPPPDTPEMFRKFIANYGDPSWIM 115 (165)
T ss_dssp CSSEEEEEEECTTCTTHHHHHHHHHHHHHHCTTEEEEEEECCSHHHHHHHTCCSTTSCCCCCHHHHHHHHHHHSCTTSEE
T ss_pred CCCEEEEEEECCCCcchhhhHHHHHHHHHHcCCcEEEEEEecccccccccccccccCCCCCCHHHHHHHHHHcCCCCeeE
Confidence 346899999999999999999999999999999999999998 44
Q ss_pred ----cchhhhCCccccceEEEE-eCCeEEEEEcCC-CHHHHHHHHhhh
Q 005108 671 ----PGVAHAENVRIVPTFKIY-KNGSRMKEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 671 ----~~l~~~~~v~~~Pt~~~~-~~G~~~~~~~g~-~~~~l~~~~~~~ 712 (714)
..++..|+|.++|+++++ ++|+++. .... +.++|++.|+++
T Consensus 116 ~~d~~~~~~~~~v~~~P~~~lid~~G~i~~-~g~~~~~~~l~~~l~~l 162 (165)
T 3ha9_A 116 VMDDGSLVEKFNVRSIDYIVIMDKSSNVLY-AGTTPSLGELESVIKSV 162 (165)
T ss_dssp EECCSHHHHHTTCCSSSEEEEEETTCCEEE-EEESCCHHHHHHHHHHC
T ss_pred EeChHHHHHHhCCCCceEEEEEcCCCcEEE-eCCCCCHHHHHHHHHHH
Confidence 378999999999999888 8999998 3333 789999999875
|
| >3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide exchange, cell inner membrane, CYT C-type biogenesis, disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB: 3kh9_A | Back alignment and structure |
|---|
Probab=98.91 E-value=1.6e-09 Score=101.14 Aligned_cols=83 Identities=12% Similarity=0.135 Sum_probs=71.6
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecc-----------------------cCcchhhhCCccccce
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDID-----------------------ESPGVAHAENVRIVPT 684 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d-----------------------~~~~l~~~~~v~~~Pt 684 (714)
.+++++.||++||++|+...|.+.++..+ ++.|+.|+++ ....++..|+|..+|+
T Consensus 58 gk~vll~F~a~~C~~C~~~~~~l~~l~~~--~v~vv~vs~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~ 135 (176)
T 3kh7_A 58 GKPALVNVWGTWCPSCRVEHPELTRLAEQ--GVVIYGINYKDDNAAAIKWLNELHNPYLLSISDADGTLGLDLGVYGAPE 135 (176)
T ss_dssp SSCEEEEEECTTCHHHHHHHHHHHHHHHT--TCEEEEEEESCCHHHHHHHHHHTTCCCSEEEEETTCHHHHHHTCCSSCE
T ss_pred CCEEEEEEECCcCHHHHHHHHHHHHHHHC--CCEEEEEeCCCCHHHHHHHHHHcCCCCceEEECCcchHHHHcCCCCCCe
Confidence 46899999999999999999999999887 7888888863 3556788999999997
Q ss_pred EEEE-eCCeEEEEEcCC-CHHHHHHHHhhh
Q 005108 685 FKIY-KNGSRMKEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 685 ~~~~-~~G~~~~~~~g~-~~~~l~~~~~~~ 712 (714)
++++ ++|+++.++.|. +.+.+++.|+++
T Consensus 136 ~~lid~~G~i~~~~~g~~~~~~l~~~l~~~ 165 (176)
T 3kh7_A 136 TYLIDKQGIIRHKIVGVVDQKVWREQLAPL 165 (176)
T ss_dssp EEEECTTCBEEEEEESCCCHHHHHHHTHHH
T ss_pred EEEECCCCeEEEEEcCCCCHHHHHHHHHHH
Confidence 7666 999999999999 888888877654
|
| >3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15} | Back alignment and structure |
|---|
Probab=98.90 E-value=2e-09 Score=98.04 Aligned_cols=86 Identities=20% Similarity=0.227 Sum_probs=74.5
Q ss_pred CCCceEEEeecCCCccccccchHHHHHHhhCCC--cEEEEEecccC-----------------------cchhhhCCccc
Q 005108 627 LPGVSVVHFKSASNLHCKQISPYVETLCGRYPS--INFLKVDIDES-----------------------PGVAHAENVRI 681 (714)
Q Consensus 627 ~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~--~~~~~vd~d~~-----------------------~~l~~~~~v~~ 681 (714)
..+++++.||++||+.|+...|.+.++..++++ +.|+.|+++.. ..++..|+|.+
T Consensus 27 ~gk~vll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~ 106 (154)
T 3kcm_A 27 KGQVVIVNFWATWCPPCREEIPSMMRLNAAMAGKPFRMLCVSIDEGGKVAVEEFFRKTGFTLPVLLDADKRVGKLYGTTG 106 (154)
T ss_dssp TTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTSSEEEEEEECCTTHHHHHHHHHHHHCCCCCEEECTTCHHHHHHTCCS
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCCeEEEEEEcCCcchHHHHHHHHHcCCCeeEEecCchHHHHHhCCCC
Confidence 346899999999999999999999999999975 88999998875 44888999999
Q ss_pred cceEEEE-eCCeEEEEEcCC---CHHHHHHHHhhh
Q 005108 682 VPTFKIY-KNGSRMKEIVCP---SRDMLEHSVRHY 712 (714)
Q Consensus 682 ~Pt~~~~-~~G~~~~~~~g~---~~~~l~~~~~~~ 712 (714)
+|+++++ ++|+++.++.|. +.+++.+.|+++
T Consensus 107 ~P~~~lid~~G~i~~~~~g~~~~~~~~l~~~l~~l 141 (154)
T 3kcm_A 107 VPETFVIDRHGVILKKVVGAMEWDHPEVIAFLNNE 141 (154)
T ss_dssp BCEEEEECTTSBEEEEEESCCCTTSHHHHHHHHTC
T ss_pred CCeEEEECCCCcEEEEEcCCCccccHHHHHHHHHH
Confidence 9976665 999999999998 567898888875
|
| >3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.90 E-value=2.5e-09 Score=97.03 Aligned_cols=83 Identities=16% Similarity=0.257 Sum_probs=72.4
Q ss_pred CCceEEEeecCCCcc--ccccchHHHHHHhhC---CCcEEEEEecccCc-------------------------chhhhC
Q 005108 628 PGVSVVHFKSASNLH--CKQISPYVETLCGRY---PSINFLKVDIDESP-------------------------GVAHAE 677 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~--C~~~~p~l~~l~~~~---~~~~~~~vd~d~~~-------------------------~l~~~~ 677 (714)
.++++++||++||++ |+...|.+.++..+| .++.|+.|++|..+ .+++.|
T Consensus 33 gk~vll~F~a~~C~~v~C~~~~~~l~~l~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 112 (150)
T 3fw2_A 33 QKSLLINFWASWNDSISQKQSNSELREIYKKYKKNKYIGMLGISLDVDKQQWKDAIKRDTLDWEQVCDFGGLNSEVAKQY 112 (150)
T ss_dssp TSEEEEEEECTTCCCHHHHHHHHHHHHHHHHHTTCSSEEEEEEECCSCHHHHHHHHHHTTCCSEEECCSCGGGCHHHHHT
T ss_pred CCEEEEEEEeCCCCchHHHHHHHHHHHHHHHhccCCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEEcCcccchHHHHHc
Confidence 468999999999999 999999999999998 35899999988754 688999
Q ss_pred CccccceEEEE-eCCeEEEEEcCCCHHHHHHHHhhh
Q 005108 678 NVRIVPTFKIY-KNGSRMKEIVCPSRDMLEHSVRHY 712 (714)
Q Consensus 678 ~v~~~Pt~~~~-~~G~~~~~~~g~~~~~l~~~~~~~ 712 (714)
+|..+|+++++ ++|+++.+.. +.++|++.|+++
T Consensus 113 ~v~~~P~~~lid~~G~i~~~~~--~~~~l~~~l~~l 146 (150)
T 3fw2_A 113 SIYKIPANILLSSDGKILAKNL--RGEELKKKIENI 146 (150)
T ss_dssp TCCSSSEEEEECTTSBEEEESC--CHHHHHHHHHHH
T ss_pred CCCccCeEEEECCCCEEEEccC--CHHHHHHHHHHH
Confidence 99999999998 9999998875 677777777654
|
| >2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A | Back alignment and structure |
|---|
Probab=98.89 E-value=1.4e-09 Score=106.46 Aligned_cols=77 Identities=10% Similarity=-0.040 Sum_probs=68.4
Q ss_pred ecCCCccccccchHHHHHHhhC---CCcEEEEEecccCcchhhhCCccccceEEEEeCCeEEEEEcCC-CHHHHHHHHhh
Q 005108 636 KSASNLHCKQISPYVETLCGRY---PSINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKEIVCP-SRDMLEHSVRH 711 (714)
Q Consensus 636 ~a~~c~~C~~~~p~l~~l~~~~---~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~~~~g~-~~~~l~~~~~~ 711 (714)
|++||++|+.+.|.+.++..++ +.+.|++||+++.++++++|+|+++||+++|++|+...++.|. +.+.+..++..
T Consensus 33 ~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Ptl~~~~~~~~~~~~~G~~~~~~l~~~~~~ 112 (229)
T 2ywm_A 33 GCESCQTAEELLKETVEVIGEAVGQDKIKLDIYSPFTHKEETEKYGVDRVPTIVIEGDKDYGIRYIGLPAGLEFTTLING 112 (229)
T ss_dssp TCGGGGHHHHHHHHHHHHHHHHHCTTTEEEEEECTTTCHHHHHHTTCCBSSEEEEESSSCCCEEEESCCCTTHHHHHHHH
T ss_pred CCcccHHHHHHHHHHHHHHhccCCCCceEEEEecCcccHHHHHHcCCCcCcEEEEECCCcccceecCCccHHHHHHHHHH
Confidence 4889999999999999987665 4599999999999999999999999999999988888999998 88888888765
Q ss_pred h
Q 005108 712 Y 712 (714)
Q Consensus 712 ~ 712 (714)
+
T Consensus 113 ~ 113 (229)
T 2ywm_A 113 I 113 (229)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=98.89 E-value=1.4e-09 Score=102.31 Aligned_cols=85 Identities=11% Similarity=0.123 Sum_probs=72.3
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhCCC--c------EEEEEeccc-CcchhhhC---------------------
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRYPS--I------NFLKVDIDE-SPGVAHAE--------------------- 677 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~--~------~~~~vd~d~-~~~l~~~~--------------------- 677 (714)
.++++|+||++||++|+...|.|.++..++++ + .|+.|+++. .++..+.|
T Consensus 59 gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~~v~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 138 (183)
T 3lwa_A 59 NQVVILNAWGQWCAPCRSESDDLQIIHEELQAAGNGDTPGGTVLGINVRDYSRDIAQDFVTDNGLDYPSIYDPPFMTAAS 138 (183)
T ss_dssp TSEEEEEEECTTCHHHHHHHHHHHHHHHHHHHCC---CCSEEEEEEECSCCCHHHHHHHHHHTTCCSCEEECTTCGGGGG
T ss_pred CCEEEEEEECCcCHhHHHHHHHHHHHHHHHHhcCCCccCCcEEEEEECCCCCHHHHHHHHHHcCCCccEEECCcchHHHH
Confidence 46899999999999999999999999998853 7 999999988 56555544
Q ss_pred ----CccccceEEEE-eCCeEEEEEcCC-CHHHHHHHHhhh
Q 005108 678 ----NVRIVPTFKIY-KNGSRMKEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 678 ----~v~~~Pt~~~~-~~G~~~~~~~g~-~~~~l~~~~~~~ 712 (714)
+|..+|+++++ ++|+++.++.|. +.++|++.|+++
T Consensus 139 ~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~l 179 (183)
T 3lwa_A 139 LGGVPASVIPTTIVLDKQHRPAAVFLREVTSKDVLDVALPL 179 (183)
T ss_dssp TTTCCTTCCSEEEEECTTSCEEEEECSCCCHHHHHHHHHHH
T ss_pred hccCCCCCCCeEEEECCCCcEEEEEcCCCCHHHHHHHHHHH
Confidence 78999976555 999999999998 999999999875
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.88 E-value=6.4e-09 Score=86.48 Aligned_cols=85 Identities=18% Similarity=0.158 Sum_probs=76.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Q 005108 245 LKRMGNELYRKGCFGEALSMYDKAISLAPRNAA-FRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVRL 323 (714)
Q Consensus 245 ~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~ 323 (714)
.+.+|..++..|++++|+..|+++++.+|++.. +++.+|.+|..+|++++|+..|+++++++|++..++..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-------- 74 (99)
T 2kc7_A 3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR-------- 74 (99)
T ss_dssp THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------
Confidence 356899999999999999999999999999999 99999999999999999999999999999999888744
Q ss_pred CCHHHHHHHHHhhc
Q 005108 324 GQVENARRHLCLSG 337 (714)
Q Consensus 324 g~~~~A~~~~~~al 337 (714)
+.+.+++..|++++
T Consensus 75 ~~~~~a~~~~~~~~ 88 (99)
T 2kc7_A 75 KMVMDILNFYNKDM 88 (99)
T ss_dssp HHHHHHHHHHCCTT
T ss_pred HHHHHHHHHHHHHh
Confidence 55677777776664
|
| >3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.88 E-value=2.2e-09 Score=96.30 Aligned_cols=83 Identities=12% Similarity=0.173 Sum_probs=69.5
Q ss_pred CCceEEEeecCCCccccccchHHHH---HHhhCC--CcEEEEEecccCcch------------------------hhhCC
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVET---LCGRYP--SINFLKVDIDESPGV------------------------AHAEN 678 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~---l~~~~~--~~~~~~vd~d~~~~l------------------------~~~~~ 678 (714)
.++++++||++||++|+...|.+.+ +..+++ ++.++.|++|+.++. +..|+
T Consensus 27 gk~vll~F~a~~C~~C~~~~~~l~~~~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 106 (142)
T 3ewl_A 27 AQYTMLFFYDPDCSNCRKFEKLFAEIPAFVEMVENGTLRVLAIYPDENREEWATKAVYMPQGWIVGWNKAGDIRTRQLYD 106 (142)
T ss_dssp CSEEEEEECCSSCHHHHHHHHHHHTCHHHHHHHHHTSEEEEEEECSSCHHHHHHHHTTSCTTCEEEECTTCHHHHTTCSC
T ss_pred CCEEEEEEECCCCccHHHHHHHHHHhHHHHHHhccCCeEEEEEEecCCHHHHHHHHHHcCCCcceeeCCccchhhHHHcC
Confidence 5689999999999999999999888 777773 599999999875543 45899
Q ss_pred ccccceEEEE-eCCeEEEEEcCCCHHHHHHHHhhh
Q 005108 679 VRIVPTFKIY-KNGSRMKEIVCPSRDMLEHSVRHY 712 (714)
Q Consensus 679 v~~~Pt~~~~-~~G~~~~~~~g~~~~~l~~~~~~~ 712 (714)
|.++|+++++ ++|+++. .+.+.++|++.|+++
T Consensus 107 v~~~P~~~lid~~G~i~~--~~~~~~~l~~~l~~~ 139 (142)
T 3ewl_A 107 IRATPTIYLLDGRKRVIL--KDTSMEQLIDYLATQ 139 (142)
T ss_dssp CCSSSEEEEECTTCBEEE--CSCCHHHHHHHHHC-
T ss_pred CCCCCeEEEECCCCCEEe--cCCCHHHHHHHHHHH
Confidence 9999999888 8999887 244899999999875
|
| >4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis} | Back alignment and structure |
|---|
Probab=98.87 E-value=2.8e-09 Score=95.79 Aligned_cols=82 Identities=11% Similarity=0.159 Sum_probs=69.2
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhCC--CcEEEEEecccC--------------------------cchhhhCCc
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRYP--SINFLKVDIDES--------------------------PGVAHAENV 679 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~--~~~~~~vd~d~~--------------------------~~l~~~~~v 679 (714)
.++++++||+.||++|+...|.+.++..+|+ ++.++.|++|.. ..+++.|+|
T Consensus 32 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v 111 (143)
T 4fo5_A 32 GRYTLLNFWAAYDAESRARNVQLANEVNKFGPDKIAMCSISMDEKESIFTETVKIDKLDLSTQFHEGLGKESELYKKYDL 111 (143)
T ss_dssp CCEEEEEEECTTCHHHHHHHHHHHHHHTTSCTTTEEEEEEECCSCHHHHHHHHHHHTCCGGGEEECTTGGGSHHHHHTTG
T ss_pred CCEEEEEEEcCcCHHHHHHHHHHHHHHHHhCcCCEEEEEEEccCCHHHHHHHHHHhCCCCceeeecccccchHHHHHcCC
Confidence 4689999999999999999999999999996 489999988743 246789999
Q ss_pred cccceEEEE-eCCeEEEEEcCCCHHHHHHHHhh
Q 005108 680 RIVPTFKIY-KNGSRMKEIVCPSRDMLEHSVRH 711 (714)
Q Consensus 680 ~~~Pt~~~~-~~G~~~~~~~g~~~~~l~~~~~~ 711 (714)
..+|+++++ ++|+++.+.. +.++|++.|++
T Consensus 112 ~~~P~~~lid~~G~i~~~~~--~~~~l~~~l~~ 142 (143)
T 4fo5_A 112 RKGFKNFLINDEGVIIAANV--TPEKLTEILKA 142 (143)
T ss_dssp GGCCCEEEECTTSBEEEESC--CHHHHHHHHTC
T ss_pred CCCCcEEEECCCCEEEEccC--CHHHHHHHHHh
Confidence 999988777 7999988754 56778888765
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.87 E-value=1.6e-08 Score=89.53 Aligned_cols=103 Identities=13% Similarity=0.104 Sum_probs=93.1
Q ss_pred CHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHhccHHHHHH
Q 005108 495 RFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLG---QWERSVEDSNQALLIQ-P-NYTKALLRRAASNSKLEKWADAVR 569 (714)
Q Consensus 495 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~-p-~~~~~~~~la~~~~~~g~~~eA~~ 569 (714)
....+.+.|.+.++.++.+.++.+++|+++.+.+ ++++++..++.+++.+ | +..+.+|.+|..|+++|+|++|.+
T Consensus 13 ~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence 4567788888888888899999999999999988 7779999999999998 7 568999999999999999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhhh
Q 005108 570 DFEVLRRELPDDNEIAESLFHAQVSLKK 597 (714)
Q Consensus 570 ~~~~al~~~p~~~~~~~~L~~~~~~l~~ 597 (714)
+++++++++|++.++......+...+.+
T Consensus 93 y~~~lL~ieP~n~QA~~Lk~~ie~~~~k 120 (152)
T 1pc2_A 93 YVRGLLQTEPQNNQAKELERLIDKAMKK 120 (152)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999988877776654
|
| >2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=98.86 E-value=2e-09 Score=97.85 Aligned_cols=80 Identities=14% Similarity=0.141 Sum_probs=69.5
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhCC--CcEEEEEecccCcc-----------------------hhhhCCcccc
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRYP--SINFLKVDIDESPG-----------------------VAHAENVRIV 682 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~--~~~~~~vd~d~~~~-----------------------l~~~~~v~~~ 682 (714)
.+++++.||++||++|+...|.+.++..+++ ++.++.|++|...+ ++..|+|..+
T Consensus 35 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~vv~i~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~~ 114 (152)
T 2lrt_A 35 GKVVLIDFTVYNNAMSAAHNLALRELYNKYASQGFEIYQISLDGDEHFWKTSADNLPWVCVRDANGAYSSYISLYNVTNL 114 (152)
T ss_dssp GSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEECSCCHHHHHHHHTTCSSEEEECSSGGGCHHHHHHTCCSC
T ss_pred CCEEEEEEEcCCChhhHHHHHHHHHHHHHhccCCeEEEEEEccCCHHHHHHHHhCCCceEEECCCCcchHHHHHcCcccC
Confidence 4589999999999999999999999999886 48999999887653 8889999999
Q ss_pred ceEEEE-eCCeEEEEEcCC-CHHHHHH
Q 005108 683 PTFKIY-KNGSRMKEIVCP-SRDMLEH 707 (714)
Q Consensus 683 Pt~~~~-~~G~~~~~~~g~-~~~~l~~ 707 (714)
|+++++ ++|+++.+..|. +.++...
T Consensus 115 P~~~lid~~G~i~~~~~g~~~~e~~~~ 141 (152)
T 2lrt_A 115 PSVFLVNRNNELSARGENIKDLDEAIK 141 (152)
T ss_dssp SEEEEEETTTEEEEETTTCSCHHHHHH
T ss_pred ceEEEECCCCeEEEecCCHHHHHHHHH
Confidence 999888 899999999999 6655443
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=98.86 E-value=4.5e-08 Score=100.05 Aligned_cols=135 Identities=13% Similarity=0.004 Sum_probs=107.7
Q ss_pred HHHHHHHHHHHHHhCc---HHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhh----C---c-C---HHHH
Q 005108 434 AYTFFVRAQIEMALGR---FENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFK----S---E-R---FTEA 499 (714)
Q Consensus 434 ~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~----~---g-~---~~~A 499 (714)
++-++..|..++..++ +.+|+.+|+++++++|++..++..+ +.+|.. . + . ...|
T Consensus 196 Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~l------------a~a~~~~~~~~~~~~~~~~~l~~a 263 (372)
T 3ly7_A 196 LLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEK------------ALVDIVRHSQHPLDEKQLAALNTE 263 (372)
T ss_dssp GHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHH------------HHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHH------------HHHHHHHhccCCCchhhHHHHHHH
Confidence 6667777887777644 6899999999999999999888755 222211 0 0 1 1122
Q ss_pred HHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Q 005108 500 CQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELP 579 (714)
Q Consensus 500 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p 579 (714)
+.. ..++..+|.++.++..++..+...|++++|+..+++++.++|+ ..+|..+|.++...|++++|++.|++|+.++|
T Consensus 264 ~~a-~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P 341 (372)
T 3ly7_A 264 IDN-IVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRP 341 (372)
T ss_dssp HHH-HHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred HHH-HHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 221 1234667999999999999999999999999999999999975 67889999999999999999999999999999
Q ss_pred CCH
Q 005108 580 DDN 582 (714)
Q Consensus 580 ~~~ 582 (714)
..+
T Consensus 342 ~~~ 344 (372)
T 3ly7_A 342 GAN 344 (372)
T ss_dssp SHH
T ss_pred CcC
Confidence 875
|
| >3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.86 E-value=1.5e-09 Score=126.55 Aligned_cols=94 Identities=17% Similarity=0.199 Sum_probs=83.5
Q ss_pred hHHhh-hccCCCceEEEeecCCCccccccchHHHHHHhhCC-CcEEEEEecccCcchhhhCCccccceEEEEeCCeEEEE
Q 005108 619 EQFRA-AVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYP-SINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKE 696 (714)
Q Consensus 619 e~~~~-~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~-~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~~ 696 (714)
+.|.. ++....+++|+||++||++|+.+.|.++++..++. ++.|+.||+++.+.+++.|+|.++||+++|++|+.+.+
T Consensus 665 ~~~~~~~~~~~~~v~v~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~ 744 (780)
T 3apo_A 665 QTFNEKVLQGKTHWVVDFYAPWSGPSQNFAPEFELLARMIKGKVRAGKVDCQAYPQTCQKAGIKAYPSVKLYQYERAKKS 744 (780)
T ss_dssp HHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTCEEEEEETTTCHHHHHHTTCCSSSEEEEEEEETTTTE
T ss_pred HHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCceEEEEECCCCHHHHHhcCCCcCCEEEEEcCCCcccc
Confidence 55654 44566789999999999999999999999999985 69999999999999999999999999999999999888
Q ss_pred EcC----C-CHHHHHHHHhhh
Q 005108 697 IVC----P-SRDMLEHSVRHY 712 (714)
Q Consensus 697 ~~g----~-~~~~l~~~~~~~ 712 (714)
+.| . +.+.|.++|+++
T Consensus 745 ~~G~~~g~~~~~~l~~~l~~~ 765 (780)
T 3apo_A 745 IWEEQINSRDAKTIAALIYGK 765 (780)
T ss_dssp EEEEEECCCCHHHHHHHHHHH
T ss_pred ccCcccCCcCHHHHHHHHHHH
Confidence 877 3 899999998874
|
| >2e7p_A Glutaredoxin; thioredoxin fold, poplar, electron transport; HET: GSH; 2.10A {Populus tremula x populus tremuloides} PDB: 1z7p_A 1z7r_A | Back alignment and structure |
|---|
Probab=98.82 E-value=7.2e-10 Score=95.69 Aligned_cols=87 Identities=15% Similarity=0.203 Sum_probs=64.5
Q ss_pred HHhhhccCCCceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccC-----cchhhhCCccccceEEEEeCCeEE
Q 005108 620 QFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDES-----PGVAHAENVRIVPTFKIYKNGSRM 694 (714)
Q Consensus 620 ~~~~~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~-----~~l~~~~~v~~~Pt~~~~~~G~~~ 694 (714)
.+..++.. ..+++ ||++||++|+.+.|.|+++... +.++.||.+.. .++++.|+|.++||+ |.+|+.+
T Consensus 12 ~~~~~~~~-~~vv~-f~a~~C~~C~~~~~~l~~~~~~---~~~v~v~~~~~~~~~~~~l~~~~~v~~~Pt~--~~~g~~v 84 (116)
T 2e7p_A 12 KAKELASS-APVVV-FSKTYCGYCNRVKQLLTQVGAS---YKVVELDELSDGSQLQSALAHWTGRGTVPNV--FIGGKQI 84 (116)
T ss_dssp HHHHHHTS-SSEEE-EECTTCHHHHHHHHHHHHHTCC---CEEEEGGGSTTHHHHHHHHHHHHSCCSSCEE--EETTEEE
T ss_pred HHHHHHcC-CCEEE-EECCCChhHHHHHHHHHHcCCC---eEEEEccCCCChHHHHHHHHHHhCCCCcCEE--EECCEEE
Confidence 33444433 34444 9999999999999999988654 34555555544 468999999999999 6699999
Q ss_pred EEEcCC----CHHHHHHHHhhhc
Q 005108 695 KEIVCP----SRDMLEHSVRHYS 713 (714)
Q Consensus 695 ~~~~g~----~~~~l~~~~~~~~ 713 (714)
.++.|. +.++|+++|++++
T Consensus 85 ~~~~~~~~~~~~~~l~~~l~~~g 107 (116)
T 2e7p_A 85 GGCDTVVEKHQRNELLPLLQDAA 107 (116)
T ss_dssp ECHHHHHHHHHTTCHHHHHHHTT
T ss_pred CChHHHHHHHhCChHHHHHHHcc
Confidence 877665 5667888888764
|
| >2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein, structural genomics, riken struc genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.47.1.10 PDB: 2ywo_A | Back alignment and structure |
|---|
Probab=98.82 E-value=5.3e-09 Score=98.88 Aligned_cols=85 Identities=18% Similarity=0.163 Sum_probs=72.2
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhCCC-cEEEEEec-----------------------------ccCcchhhhC
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRYPS-INFLKVDI-----------------------------DESPGVAHAE 677 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~-~~~~~vd~-----------------------------d~~~~l~~~~ 677 (714)
.++++|+||++||++|+...|.++++..++.+ +.|+.|++ |...++++.|
T Consensus 33 gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~v~v~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 112 (188)
T 2cvb_A 33 EPLLAVVFMCNHCPYVKGSIGELVALAERYRGKVAFVGINANDYEKYPEDAPEKMAAFAEEHGIFFPYLLDETQEVAKAY 112 (188)
T ss_dssp SSEEEEEEECSSCHHHHTTHHHHHHHHHHTTTTEEEEEEECCCTTTCGGGSHHHHHHHHHHHTCCSCEEECSSSHHHHHT
T ss_pred CCEEEEEEECCCCccHHHHHHHHHHHHHHhhcCeEEEEEEcCccccccccCHHHHHHHHHHhCCCceEEECCcchHHHHc
Confidence 46899999999999999999999999999977 89999988 3356789999
Q ss_pred CccccceEEEE-eCCeEEEE--------EcCC-CHHHHHHHHhhh
Q 005108 678 NVRIVPTFKIY-KNGSRMKE--------IVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 678 ~v~~~Pt~~~~-~~G~~~~~--------~~g~-~~~~l~~~~~~~ 712 (714)
+|..+|+++++ ++|+++.+ +.|. +.++|++.|+++
T Consensus 113 ~v~~~P~~~lid~~G~i~~~g~~~~~~~~~g~~~~~~l~~~i~~l 157 (188)
T 2cvb_A 113 RALRTPEVFLFDERRLLRYHGRVNDNPKDPSKVQSHDLEAAIEAL 157 (188)
T ss_dssp TCCEESEEEEECTTCBEEEEECSSSCTTCGGGCCCCHHHHHHHHH
T ss_pred CCCCCCeEEEECCCCcEEEEEecCCccccccccCHHHHHHHHHHH
Confidence 99999999888 99999887 2233 678888888765
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.82 E-value=1.2e-08 Score=110.71 Aligned_cols=135 Identities=16% Similarity=0.140 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-----C---C
Q 005108 244 ELKRMGNELYRKGCFGEALSMYDKAISL-----APRN---AAFRSNRAAALTGLGRIGEAVKECEEAVRL-----D---P 307 (714)
Q Consensus 244 ~~~~~g~~~~~~g~~~~Al~~~~~al~~-----~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~---p 307 (714)
.....+..+..+|+|++|+.+|++++++ .|++ ...+.++|.+|..+|+|++|+.++++++++ . |
T Consensus 311 ~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp 390 (490)
T 3n71_A 311 DTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNA 390 (490)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCH
Confidence 3445566678899999999999999986 3444 567889999999999999999999999875 3 3
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCC--C
Q 005108 308 NYWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADF--S 385 (714)
Q Consensus 308 ~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~--~ 385 (714)
+-...+.+||.+|..+|++++|+.+|++++ +.+++.+ +|++ .
T Consensus 391 ~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al----------------------------------~i~~~~l--G~~Hp~~ 434 (490)
T 3n71_A 391 QLGMAVMRAGLTNWHAGHIEVGHGMICKAY----------------------------------AILLVTH--GPSHPIT 434 (490)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHH----------------------------------HHHHHHT--CTTSHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH----------------------------------HHHHHHh--CCCChHH
Confidence 446788999999999999999999987764 2222222 2222 2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHhhcccc
Q 005108 386 PQLSMCRVEALLKLHQLEDAESSLSNIPK 414 (714)
Q Consensus 386 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 414 (714)
..+..+++.++..++++++|...|.++.+
T Consensus 435 ~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 435 KDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445677777788888888877777654
|
| >2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB struct genomics consortium, TBSGC, unknown function; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.81 E-value=4.6e-09 Score=108.52 Aligned_cols=85 Identities=16% Similarity=0.185 Sum_probs=75.3
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhCC--CcEEEEEecc---------------------------cCcchhhhCC
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRYP--SINFLKVDID---------------------------ESPGVAHAEN 678 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~--~~~~~~vd~d---------------------------~~~~l~~~~~ 678 (714)
.++++|+||++||++|+.+.|.|.++..+++ ++.|+.|+++ ....+++.|+
T Consensus 82 GK~vLl~F~atwC~~C~~~~p~L~~l~~~~~~~~v~vi~Vs~d~~~~~d~~~~~~~~~~~~~l~fpv~~D~~~~l~~~yg 161 (352)
T 2hyx_A 82 GKVVLIDFWAYSCINCQRAIPHVVGWYQAYKDSGLAVIGVHTPEYAFEKVPGNVAKGAANLGISYPIALDNNYATWTNYR 161 (352)
T ss_dssp TSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEECCSSGGGGCHHHHHHHHHHHTCCSCEEECTTSHHHHHTT
T ss_pred CCEEEEEEECCCChhHHHHHHHHHHHHHHhhcCCeEEEEEECCcccccCCHHHHHHHHHHcCCCccEEeCCcHHHHHHcC
Confidence 5689999999999999999999999999986 4899999764 2457889999
Q ss_pred ccccceEEEE-eCCeEEEEEcCC-CHHHHHHHHhhh
Q 005108 679 VRIVPTFKIY-KNGSRMKEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 679 v~~~Pt~~~~-~~G~~~~~~~g~-~~~~l~~~~~~~ 712 (714)
|..+|+++++ ++|+++.++.|. +.++|++.|+++
T Consensus 162 V~~~Pt~~lID~~G~Iv~~~~G~~~~~~l~~~I~~l 197 (352)
T 2hyx_A 162 NRYWPAEYLIDATGTVRHIKFGEGDYNVTETLVRQL 197 (352)
T ss_dssp CCEESEEEEECTTSBEEEEEESBCCHHHHHHHHHHH
T ss_pred CCccCEEEEEeCCCeEEEEEcCCCCHHHHHHHHHHH
Confidence 9999998888 999999999998 899999988874
|
| >1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A | Back alignment and structure |
|---|
Probab=98.81 E-value=6.2e-09 Score=114.88 Aligned_cols=81 Identities=16% Similarity=0.155 Sum_probs=74.1
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCcchhhhCCccccceEEEEeCCeEEEEEcCC-CHHHHH
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKEIVCP-SRDMLE 706 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~~~~g~-~~~~l~ 706 (714)
....++.||++||++|+++.|.++++...++++.|.++|+++.+++++.|+|+++||+++ ||+.+.+ |. +.++|.
T Consensus 117 ~~~~i~~f~a~~C~~C~~~~~~l~~~a~~~~~v~~~~vd~~~~~~~~~~~~i~svPt~~i--~g~~~~~--G~~~~~~l~ 192 (521)
T 1hyu_A 117 GDFEFETYYSLSCHNCPDVVQALNLMAVLNPRIKHTAIDGGTFQNEITERNVMGVPAVFV--NGKEFGQ--GRMTLTEIV 192 (521)
T ss_dssp SCEEEEEEECTTCSSHHHHHHHHHHHHHHCTTEEEEEEETTTCHHHHHHTTCCSSSEEEE--TTEEEEE--SCCCHHHHH
T ss_pred CCcceEEEECCCCcCcHHHHHHHHHHHhHcCceEEEEEechhhHHHHHHhCCCccCEEEE--CCEEEec--CCCCHHHHH
Confidence 346789999999999999999999999999999999999999999999999999999977 9998865 88 999999
Q ss_pred HHHhhh
Q 005108 707 HSVRHY 712 (714)
Q Consensus 707 ~~~~~~ 712 (714)
++|++.
T Consensus 193 ~~l~~~ 198 (521)
T 1hyu_A 193 AKVDTG 198 (521)
T ss_dssp HHHCCS
T ss_pred HHHhhc
Confidence 988653
|
| >2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=98.80 E-value=3.5e-09 Score=100.86 Aligned_cols=83 Identities=17% Similarity=0.308 Sum_probs=72.7
Q ss_pred ceEEEeecCCCccccccchHHHHHHhhCC--CcEEEEEecc-----------------------------cCcchhhhCC
Q 005108 630 VSVVHFKSASNLHCKQISPYVETLCGRYP--SINFLKVDID-----------------------------ESPGVAHAEN 678 (714)
Q Consensus 630 ~~vv~f~a~~c~~C~~~~p~l~~l~~~~~--~~~~~~vd~d-----------------------------~~~~l~~~~~ 678 (714)
+++++||++||++|+...|.+.++..++. ++.|+.|+++ ...++++.|+
T Consensus 48 ~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~v~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 127 (196)
T 2ywi_A 48 ATVIMFICNHCPFVKHVQHELVRLANDYMPKGVSFVAINSNDAEQYPEDSPENMKKVAEELGYPFPYLYDETQEVAKAYD 127 (196)
T ss_dssp EEEEEECCSSCHHHHHHHHHHHHHHHHHGGGTCEEEEEECSCTTTCGGGSHHHHHHHHHHHTCCSCEEECSSCHHHHHHT
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHHHHhCCcEEEEEECCccccccccCHHHHHHHHHHcCCCceEEECCchHHHHHhC
Confidence 49999999999999999999999999886 4999999983 3567899999
Q ss_pred ccccceEEEE-eCCeEEEE---------EcCC-CHHHHHHHHhhh
Q 005108 679 VRIVPTFKIY-KNGSRMKE---------IVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 679 v~~~Pt~~~~-~~G~~~~~---------~~g~-~~~~l~~~~~~~ 712 (714)
|..+|+++++ ++|+++.+ +.|. +.++|++.|+++
T Consensus 128 v~~~P~~~lid~~G~i~~~~~~~~~~~~~~g~~~~~~l~~~i~~l 172 (196)
T 2ywi_A 128 AACTPDFYIFDRDLKCVYRGQLDDSRPNNGIPVTGESIRAALDAL 172 (196)
T ss_dssp CCEESEEEEEETTCBEEEEECSSSCCTTTCCCCCCHHHHHHHHHH
T ss_pred CCCCCeEEEEcCCCeEEEccccCcccccccCccCHHHHHHHHHHH
Confidence 9999998888 89999988 4577 889999988875
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.79 E-value=4.3e-08 Score=87.35 Aligned_cols=120 Identities=10% Similarity=0.002 Sum_probs=102.1
Q ss_pred CCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHH
Q 005108 400 HQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKL 479 (714)
Q Consensus 400 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~ 479 (714)
+++++|+.+|+++.+..... + . +|.+|...+.+++|+++|+++.+. .++.+++.+
T Consensus 9 ~d~~~A~~~~~~aa~~g~~~--------------a--~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~L----- 63 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEMF--------------G--C--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFL----- 63 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCTT--------------H--H--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHH-----
T ss_pred cCHHHHHHHHHHHHcCCCHh--------------h--h--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHH-----
Confidence 46788999999998877554 3 3 899999999999999999999986 567777665
Q ss_pred HHHHHHHHhHHhh----CcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHhCCCCHHHH
Q 005108 480 VARARARGNDLFK----SERFTEACQAYGEGLRFDPSNSVLYCNRAACWFK----LGQWERSVEDSNQALLIQPNYTKAL 551 (714)
Q Consensus 480 ~~~~~~~g~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~ 551 (714)
|.+|.. .+++++|+.+|+++.+. .++.+++++|.+|.. .+++++|+++|+++.+. .+..+.
T Consensus 64 -------g~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~ 132 (138)
T 1klx_A 64 -------GDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL--GSEDAC 132 (138)
T ss_dssp -------HHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHH
T ss_pred -------HHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC--CCHHHH
Confidence 999998 89999999999999987 689999999999999 99999999999999987 455666
Q ss_pred HHHH
Q 005108 552 LRRA 555 (714)
Q Consensus 552 ~~la 555 (714)
..++
T Consensus 133 ~~l~ 136 (138)
T 1klx_A 133 GILN 136 (138)
T ss_dssp HHC-
T ss_pred HHHh
Confidence 6554
|
| >2k8s_A Thioredoxin; dimer, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Nitrosomonas europaea} | Back alignment and structure |
|---|
Probab=98.79 E-value=1.2e-09 Score=87.24 Aligned_cols=72 Identities=19% Similarity=0.246 Sum_probs=56.4
Q ss_pred eEEEeecCCCccccccchHHHHHHhhCC-CcEEEEEecc-cCcchhhhCCccccceEEEEeCCeEEEEEcCC--CHHHHH
Q 005108 631 SVVHFKSASNLHCKQISPYVETLCGRYP-SINFLKVDID-ESPGVAHAENVRIVPTFKIYKNGSRMKEIVCP--SRDMLE 706 (714)
Q Consensus 631 ~vv~f~a~~c~~C~~~~p~l~~l~~~~~-~~~~~~vd~d-~~~~l~~~~~v~~~Pt~~~~~~G~~~~~~~g~--~~~~l~ 706 (714)
.++.|+++||++|+.+.|.++++..++. .+.++.||.+ +..+++..|||+++||+++ ||+.+. +|. +.++|+
T Consensus 3 ~~~~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~gv~~vPt~~i--~g~~~~--~G~~~~~~~l~ 78 (80)
T 2k8s_A 3 SKAIFYHAGCPVCVSAEQAVANAIDPSKYTVEIVHLGTDKARIAEAEKAGVKSVPALVI--DGAAFH--INFGAGIDDLK 78 (80)
T ss_dssp EEEEEEECSCHHHHHHHHHHHHHSCTTTEEEEEEETTTCSSTHHHHHHHTCCEEEEEEE--TTEEEE--EEEEEEHHHHC
T ss_pred ceEEEeCCCCCchHHHHHHHHHHHHhcCCeEEEEEecCChhhHHHHHHcCCCcCCEEEE--CCEEEE--eccCcCHHHhh
Confidence 3678999999999999999999987764 3555555554 5778899999999999877 998764 343 666664
|
| >3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major} | Back alignment and structure |
|---|
Probab=98.79 E-value=4.3e-09 Score=97.10 Aligned_cols=72 Identities=13% Similarity=0.213 Sum_probs=63.2
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhCC---CcEEEEEecccC------------------------cchhhhCCcc
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRYP---SINFLKVDIDES------------------------PGVAHAENVR 680 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~---~~~~~~vd~d~~------------------------~~l~~~~~v~ 680 (714)
.++++|+||++||++|+.+.|.+.++..+++ ++.++.|++|.. ..+++.|+|.
T Consensus 48 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 127 (165)
T 3s9f_A 48 GKTVFFYFSASWCPPCRGFTPQLVEFYEKHHDSKNFEIILASWDEEEDDFNAYYAKMPWLSIPFANRNIVEALTKKYSVE 127 (165)
T ss_dssp TSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHTTCC
T ss_pred CCEEEEEEECCcChhHHHHHHHHHHHHHHhccCCCeEEEEEecCCCHHHHHHHHHhCCCcccccCchhHHHHHHHHcCCC
Confidence 4689999999999999999999999999986 488999998876 6789999999
Q ss_pred ccceEEEE-eC-CeEEEEEcC
Q 005108 681 IVPTFKIY-KN-GSRMKEIVC 699 (714)
Q Consensus 681 ~~Pt~~~~-~~-G~~~~~~~g 699 (714)
.+|+++++ ++ |+++.+..+
T Consensus 128 ~~Pt~~lid~~~G~iv~~~~~ 148 (165)
T 3s9f_A 128 SIPTLIGLNADTGDTVTTRAR 148 (165)
T ss_dssp SSSEEEEEETTTCCEEESCHH
T ss_pred CCCEEEEEeCCCCEEEecccH
Confidence 99999988 55 999886543
|
| >2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=98.78 E-value=6.7e-09 Score=102.23 Aligned_cols=95 Identities=12% Similarity=0.079 Sum_probs=80.4
Q ss_pred eehhhhHHhhhccC-CCceEEEeecCC--CccccccchHHHHHHhhCCC------cEEEEEecccCcchhhhCCccccce
Q 005108 614 EVSSLEQFRAAVSL-PGVSVVHFKSAS--NLHCKQISPYVETLCGRYPS------INFLKVDIDESPGVAHAENVRIVPT 684 (714)
Q Consensus 614 ~i~~~e~~~~~i~~-~~~~vv~f~a~~--c~~C~~~~p~l~~l~~~~~~------~~~~~vd~d~~~~l~~~~~v~~~Pt 684 (714)
.....++++..+.. .++++++||++| |++|+++.+.++++...++. +.|+++|+++.++++..|+|+++||
T Consensus 10 ~~~~~~ql~~~~~~~~~pv~v~~~~~~~~c~~c~~~~~~l~ela~~~~~~~~~~~v~~~~vd~d~~~~~~~~~gv~~~Pt 89 (243)
T 2hls_A 10 SEDFRRELRETLAEMVNPVEVHVFLSKSGCETCEDTLRLMKLFEEESPTRNGGKLLKLNVYYRESDSDKFSEFKVERVPT 89 (243)
T ss_dssp CHHHHHHHHHHHTTCCSCEEEEEEECSSSCTTHHHHHHHHHHHHHHSCEETTEESEEEEEEETTTTHHHHHHTTCCSSSE
T ss_pred CHHHHHHHHHHHHhCCCCEEEEEEeCCCCCCchHHHHHHHHHHHHhccCCCCCceeEEEEecCCcCHHHHHhcCCCcCCE
Confidence 34555677766644 468899999999 99999999999999988765 9999999999999999999999999
Q ss_pred EEEEeCCeEEEEEcCC-CHHHHHHHHhh
Q 005108 685 FKIYKNGSRMKEIVCP-SRDMLEHSVRH 711 (714)
Q Consensus 685 ~~~~~~G~~~~~~~g~-~~~~l~~~~~~ 711 (714)
++++ +| ..++.|. +.+.+..++..
T Consensus 90 ~~i~-~g--~~~~~G~~~~~~l~~fv~~ 114 (243)
T 2hls_A 90 VAFL-GG--EVRWTGIPAGEEIRALVEV 114 (243)
T ss_dssp EEET-TT--TEEEESCCCTTHHHHHHHH
T ss_pred EEEE-CC--ceeEcCCCcHHHHHHHHHH
Confidence 9999 77 7778787 77778777665
|
| >3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation, blood coagulation, oxidoreduc blood coagulation,oxidoreductase; HET: U10; 3.60A {Synechococcus SP} | Back alignment and structure |
|---|
Probab=98.78 E-value=1.2e-09 Score=108.80 Aligned_cols=72 Identities=14% Similarity=0.200 Sum_probs=59.6
Q ss_pred eEEEeecCCCccccccchHHHHHHhhCCCcEEEEEe---c-ccCcchhhhCCccccceEEEEeCCeEEEEEcCC-CHHHH
Q 005108 631 SVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVD---I-DESPGVAHAENVRIVPTFKIYKNGSRMKEIVCP-SRDML 705 (714)
Q Consensus 631 ~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd---~-d~~~~l~~~~~v~~~Pt~~~~~~G~~~~~~~g~-~~~~l 705 (714)
.+++|+++||++|+++.|.++++.++++ ++.+| . ++.++++++|+|+++||+++ ||++ +.|. +.++|
T Consensus 200 ~vV~F~A~WC~~Ck~l~p~le~lA~~l~---~Vd~d~~d~~~~~~~la~~~gI~~vPT~~i--~G~~---~~G~~~~~~L 271 (291)
T 3kp9_A 200 GGTMYGAYWCPHCQDQKELFGAAFDQVP---YVECSPNGPGTPQAQECTEAGITSYPTWII--NGRT---YTGVRSLEAL 271 (291)
T ss_dssp TCEEEECTTCHHHHHHHHHHGGGGGGSC---EEESCSSCSSSCCCHHHHTTTCCSTTEEEE--TTEE---EESCCCHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHcC---EEEEeecCchhhHHHHHHHcCCcccCeEEE--CCEE---ecCCCCHHHH
Confidence 3689999999999999999999987764 44444 2 34789999999999999655 9974 7788 99999
Q ss_pred HHHHh
Q 005108 706 EHSVR 710 (714)
Q Consensus 706 ~~~~~ 710 (714)
+++++
T Consensus 272 ~~~l~ 276 (291)
T 3kp9_A 272 AVASG 276 (291)
T ss_dssp HHHTC
T ss_pred HHHHC
Confidence 98875
|
| >2ls5_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, NEW structural genomics research consortium; NMR {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.26 E-value=7.2e-10 Score=101.73 Aligned_cols=85 Identities=14% Similarity=0.171 Sum_probs=69.5
Q ss_pred CCceEEEeecCCCccccccchHHHH-HHhhCC---CcEEEEEecccCcchhhhC----------------------C--c
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVET-LCGRYP---SINFLKVDIDESPGVAHAE----------------------N--V 679 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~-l~~~~~---~~~~~~vd~d~~~~l~~~~----------------------~--v 679 (714)
.+++++.||++||++|+...|.+.+ +..++. ++.++.|++|+.++..++| + +
T Consensus 33 gk~vll~f~a~~C~~C~~~~~~l~~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 112 (159)
T 2ls5_A 33 GKVVMLQFTASWCGVCRKEMPFIEKDIWLKHKDNADFALIGIDRDEPLEKVLAFAKSTGVTYPLGLDPGADIFAKYALRD 112 (159)
Confidence 4588999999999999999999998 877775 5889999888765544444 3 6
Q ss_pred cccceEEEE-eCCeEEEEEcCCCHHHHHHHHhhh
Q 005108 680 RIVPTFKIY-KNGSRMKEIVCPSRDMLEHSVRHY 712 (714)
Q Consensus 680 ~~~Pt~~~~-~~G~~~~~~~g~~~~~l~~~~~~~ 712 (714)
.++|+++++ ++|+++.+..|.+.+++++.|+++
T Consensus 113 ~~~P~~~lid~~G~i~~~~~g~~~~~l~~~l~~l 146 (159)
T 2ls5_A 113 AGITRNVLIDREGKIVKLTRLYNEEEFASLVQQI 146 (159)
Confidence 779999888 999999999898777788777664
|
| >2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.75 E-value=1.9e-08 Score=93.38 Aligned_cols=85 Identities=13% Similarity=0.138 Sum_probs=72.3
Q ss_pred CCceEEEeecCCCcc-ccccchHHHHHHhhC------CCcEEEEEecccC----------------------------cc
Q 005108 628 PGVSVVHFKSASNLH-CKQISPYVETLCGRY------PSINFLKVDIDES----------------------------PG 672 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~-C~~~~p~l~~l~~~~------~~~~~~~vd~d~~----------------------------~~ 672 (714)
.+++++.||++||++ |....|.+.++..++ .++.++.|++|.. ..
T Consensus 26 gk~vll~F~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~vv~is~d~~~d~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 105 (171)
T 2rli_A 26 GQWVLMYFGFTHCPDICPDELEKLVQVVRQLEAEPGLPPVQPVFITVDPERDDVEAMARYVQDFHPRLLGLTGSTKQVAQ 105 (171)
T ss_dssp TSEEEEEEECTTCSSSHHHHHHHHHHHHHHHHHSTTSCCEEEEEEESCSTTCCHHHHHHHHHTTCTTCCEEECCHHHHHH
T ss_pred CCEEEEEEEcCCCCchhHHHHHHHHHHHHHHhhccCCCceEEEEEEECCCCCCHHHHHHHHHHcCCCeEEEeCCHHHHHH
Confidence 468999999999998 999999999999888 4799999988731 14
Q ss_pred hhhhCCccccc---------------eEEEE-eCCeEEEEEcCC-CHHHHHHHHhhh
Q 005108 673 VAHAENVRIVP---------------TFKIY-KNGSRMKEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 673 l~~~~~v~~~P---------------t~~~~-~~G~~~~~~~g~-~~~~l~~~~~~~ 712 (714)
+++.|+|..+| +++++ ++|+++.++.|. +.++|.+.|+++
T Consensus 106 ~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~l~~l 162 (171)
T 2rli_A 106 ASHSYRVYYNAGPKDEDQDYIVDHSIAIYLLNPDGLFTDYYGRSRSAEQISDSVRRH 162 (171)
T ss_dssp HHHHSCCCCEECCCCSSCCCCEECCCEEEEECTTSCEEEEEESSCCHHHHHHHHHHH
T ss_pred HHHHhCeEEEecCCCCCCCeEEeccceEEEECCCCeEEEEECCCCCHHHHHHHHHHH
Confidence 78899999888 65555 999999999998 888898888764
|
| >1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A | Back alignment and structure |
|---|
Probab=98.75 E-value=4.8e-09 Score=94.63 Aligned_cols=72 Identities=13% Similarity=0.175 Sum_probs=62.9
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhCC---CcEEEEEecccC------------------------cchhhhCCcc
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRYP---SINFLKVDIDES------------------------PGVAHAENVR 680 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~---~~~~~~vd~d~~------------------------~~l~~~~~v~ 680 (714)
.++++++||++||++|+...|.+.++..+++ ++.++.|++|+. ..+++.|+|.
T Consensus 28 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~ 107 (146)
T 1o8x_A 28 GKLVFFYFSASWCPPARGFTPQLIEFYDKFHESKNFEVVFCTWDEEEDGFAGYFAKMPWLAVPFAQSEAVQKLSKHFNVE 107 (146)
T ss_dssp TCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCGGGHHHHHHHHHHTTCC
T ss_pred CCEEEEEEEccCCHHHHHHHHHHHHHHHHhhhcCCeEEEEEeCCCCHHHHHHHHHHCCceeeccchhhHHHHHHHHhCCC
Confidence 4689999999999999999999999999886 588999988863 4688999999
Q ss_pred ccceEEEEe--CCeEEEEEcC
Q 005108 681 IVPTFKIYK--NGSRMKEIVC 699 (714)
Q Consensus 681 ~~Pt~~~~~--~G~~~~~~~g 699 (714)
++|+++++. +|+++.+..+
T Consensus 108 ~~Pt~~lid~~~G~i~~~~~~ 128 (146)
T 1o8x_A 108 SIPTLIGVDADSGDVVTTRAR 128 (146)
T ss_dssp SSSEEEEEETTTCCEEESCHH
T ss_pred CCCEEEEEECCCCeEEEecch
Confidence 999999886 9999887543
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=1.9e-07 Score=91.41 Aligned_cols=87 Identities=10% Similarity=0.026 Sum_probs=80.3
Q ss_pred CHHHHHHHHHHhhccCCC--CHHHHHHHHHHHHHh-----CCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHH-hccHH
Q 005108 495 RFTEACQAYGEGLRFDPS--NSVLYCNRAACWFKL-----GQWERSVEDSNQALLIQPNY-TKALLRRAASNSK-LEKWA 565 (714)
Q Consensus 495 ~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~-~g~~~ 565 (714)
...+|...++++++++|+ +..+|..+|.+|.+. |+.++|.++|+++++++|+. ..+++.+|..++. +|+++
T Consensus 178 ~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~ 257 (301)
T 3u64_A 178 TVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA 257 (301)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence 467899999999999999 677999999999995 99999999999999999975 9999999999988 59999
Q ss_pred HHHHHHHHHHHhCCCC
Q 005108 566 DAVRDFEVLRRELPDD 581 (714)
Q Consensus 566 eA~~~~~~al~~~p~~ 581 (714)
+|.+++++++..+|..
T Consensus 258 ~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 258 GFDEALDRALAIDPES 273 (301)
T ss_dssp HHHHHHHHHHHCCGGG
T ss_pred HHHHHHHHHHcCCCCC
Confidence 9999999999988763
|
| >1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A | Back alignment and structure |
|---|
Probab=98.74 E-value=5.2e-09 Score=94.11 Aligned_cols=71 Identities=13% Similarity=0.160 Sum_probs=62.5
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhCC---CcEEEEEecccC------------------------cchhhhCCcc
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRYP---SINFLKVDIDES------------------------PGVAHAENVR 680 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~---~~~~~~vd~d~~------------------------~~l~~~~~v~ 680 (714)
.++++++||++||++|+.+.|.+.++..+++ ++.++.|++|.. ..+++.|+|.
T Consensus 28 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~ 107 (144)
T 1i5g_A 28 GKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDVK 107 (144)
T ss_dssp TSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHTTCC
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCCCEEEEEEeCCCCHHHHHHHHHhCCccccccCchHHHHHHHHHcCCC
Confidence 4689999999999999999999999999886 588999998863 4688999999
Q ss_pred ccceEEEE--eCCeEEEEEc
Q 005108 681 IVPTFKIY--KNGSRMKEIV 698 (714)
Q Consensus 681 ~~Pt~~~~--~~G~~~~~~~ 698 (714)
.+|+++++ ++|+++.+..
T Consensus 108 ~~P~~~lid~~~G~i~~~~~ 127 (144)
T 1i5g_A 108 SIPTLVGVEADSGNIITTQA 127 (144)
T ss_dssp SSSEEEEEETTTCCEEESCH
T ss_pred CCCEEEEEECCCCcEEeccc
Confidence 99999988 5999988654
|
| >1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A | Back alignment and structure |
|---|
Probab=98.74 E-value=6.8e-09 Score=83.85 Aligned_cols=74 Identities=16% Similarity=0.243 Sum_probs=62.0
Q ss_pred eEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCc----chhhhCC--ccccceEEEEeCCeEEEEEcCCCHHH
Q 005108 631 SVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESP----GVAHAEN--VRIVPTFKIYKNGSRMKEIVCPSRDM 704 (714)
Q Consensus 631 ~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~----~l~~~~~--v~~~Pt~~~~~~G~~~~~~~g~~~~~ 704 (714)
.++.|+++||+.|+.+.+.|+++..+++++.|..+|+++.+ ++++.++ |.++|++ +.+|+.+. |. ++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~vdi~~~~~~~~~l~~~~~~~~~~vP~i--~~~g~~i~---~~--~~ 74 (85)
T 1ego_A 2 QTVIFGRSGCPYCVRAKDLAEKLSNERDDFQYQYVDIRAEGITKEDLQQKAGKPVETVPQI--FVDQQHIG---GY--TD 74 (85)
T ss_dssp EEEEECCTTSTHHHHHHHHHHHHHHHHSSCEEEEECHHHHTCCSHHHHHHTCCCSCCSCEE--EETTEEEE---SS--HH
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHhcCCCceEEEEecccChHHHHHHHHHhCCCCceeCeE--EECCEEEE---CH--HH
Confidence 36789999999999999999999988888999999998754 7888999 9999998 45898764 33 56
Q ss_pred HHHHHhh
Q 005108 705 LEHSVRH 711 (714)
Q Consensus 705 l~~~~~~ 711 (714)
|..++++
T Consensus 75 l~~~~~~ 81 (85)
T 1ego_A 75 FAAWVKE 81 (85)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7777665
|
| >2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A | Back alignment and structure |
|---|
Probab=98.71 E-value=3e-08 Score=91.16 Aligned_cols=85 Identities=15% Similarity=0.156 Sum_probs=71.5
Q ss_pred CCceEEEeecCCCcc-ccccchHHHHHHhhC------CCcEEEEEecccCc----------------------------c
Q 005108 628 PGVSVVHFKSASNLH-CKQISPYVETLCGRY------PSINFLKVDIDESP----------------------------G 672 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~-C~~~~p~l~~l~~~~------~~~~~~~vd~d~~~----------------------------~ 672 (714)
.+++++.||+.||++ |....|.+.++..++ +++.++.|++|... .
T Consensus 23 gk~vll~f~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~~~vv~vs~d~~~d~~~~~~~~~~~~~~~~~~l~~~~d~~~~ 102 (164)
T 2ggt_A 23 GQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPERDTKEAIANYVKEFSPKLVGLTGTREEVDQ 102 (164)
T ss_dssp TCEEEEEEECTTCSSHHHHHHHHHHHHHHHHHHSSSSCCEEEEEEESCTTTCCHHHHHHHHHTTCSSCEEEECCHHHHHH
T ss_pred CCEEEEEEEeCCCCchhHHHHHHHHHHHHHHhhccCCCcEEEEEEEeCCCCCCHHHHHHHHHHcCCCeEEEeCCHHHHHH
Confidence 468999999999998 999999999998877 37889998887521 3
Q ss_pred hhhhCCccccc---------------eEEEE-eCCeEEEEEcCC-CHHHHHHHHhhh
Q 005108 673 VAHAENVRIVP---------------TFKIY-KNGSRMKEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 673 l~~~~~v~~~P---------------t~~~~-~~G~~~~~~~g~-~~~~l~~~~~~~ 712 (714)
+++.|+|..+| +++++ ++|+++.++.|. +.++|.+.|+++
T Consensus 103 ~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~l~~l 159 (164)
T 2ggt_A 103 VARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGPDGEFLDYFGQNKRKGEIAASIATH 159 (164)
T ss_dssp HHHTTTCCEEEEEECTTSCEEEEECCEEEEECTTSCEEEEEETTCCHHHHHHHHHHH
T ss_pred HHHhcCeEEEecCCCCCCCeeEeccceEEEECCCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 78899999999 55555 999999999998 888888888764
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.70 E-value=9.4e-08 Score=78.27 Aligned_cols=74 Identities=15% Similarity=0.131 Sum_probs=69.1
Q ss_pred CCCCHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHH
Q 005108 510 DPSNSVLYCNRAACWFKLGQ---WERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNE 583 (714)
Q Consensus 510 ~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~ 583 (714)
+|+++.++..+|.+++..++ .++|...++++++++|+++.+++.+|..+++.|+|++|+.+|+++++.+|.++.
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~ 78 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLD 78 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCC
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence 58899999999999987766 799999999999999999999999999999999999999999999999998543
|
| >1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=98.70 E-value=2.4e-08 Score=94.14 Aligned_cols=85 Identities=16% Similarity=0.290 Sum_probs=71.3
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhCC--CcEEEEEecccC-----cchhhhCCcc--------------------
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRYP--SINFLKVDIDES-----PGVAHAENVR-------------------- 680 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~--~~~~~~vd~d~~-----~~l~~~~~v~-------------------- 680 (714)
.++++++||++||++|+...|.+.++..++. ++.++.|++|.. .+.++.+++.
T Consensus 60 gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 139 (186)
T 1jfu_A 60 GKTLLVNLWATWCVPCRKEMPALDELQGKLSGPNFEVVAINIDTRDPEKPKTFLKEANLTRLGYFNDQKAKVFQDLKAIG 139 (186)
T ss_dssp TSEEEEEEECTTCHHHHHHHHHHHHHHHHHCBTTEEEEEEECCCSCTTHHHHHHHHTTCCTTCCEECTTCHHHHHHHTTT
T ss_pred CCEEEEEEEeCCCHhHHHHHHHHHHHHHHhccCCcEEEEEECCCCCHHHHHHHHHHcCCCCCceEECCcchHHHHhcccc
Confidence 4689999999999999999999999999886 699999998864 2345556653
Q ss_pred ---ccceEEEE-eCCeEEEEEcCC-C--HHHHHHHHhhh
Q 005108 681 ---IVPTFKIY-KNGSRMKEIVCP-S--RDMLEHSVRHY 712 (714)
Q Consensus 681 ---~~Pt~~~~-~~G~~~~~~~g~-~--~~~l~~~~~~~ 712 (714)
++|+++++ ++|+++.++.|. + .++|++.|+++
T Consensus 140 ~~~~~P~~~lid~~G~i~~~~~g~~~~~~~~l~~~l~~l 178 (186)
T 1jfu_A 140 RALGMPTSVLVDPQGCEIATIAGPAEWASEDALKLIRAA 178 (186)
T ss_dssp CCSSSSEEEEECTTSBEEEEEESCCCTTSHHHHHHHHHH
T ss_pred ccCCCCEEEEECCCCCEEEEEecCCccCHHHHHHHHHHH
Confidence 89998888 999999999998 4 68888888875
|
| >1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=98.69 E-value=9.5e-09 Score=92.33 Aligned_cols=71 Identities=13% Similarity=0.255 Sum_probs=62.2
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhCC---CcEEEEEecccC------------------------cchhhhCCcc
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRYP---SINFLKVDIDES------------------------PGVAHAENVR 680 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~---~~~~~~vd~d~~------------------------~~l~~~~~v~ 680 (714)
.+++++.||++||++|+...|.+.++..+++ ++.++.|++|.. ..+++.|+|.
T Consensus 28 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 107 (144)
T 1o73_A 28 GKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVAKNFEVVLISWDENESDFHDYYGKMPWLALPFDQRSTVSELGKTFGVE 107 (144)
T ss_dssp TCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHHTCC
T ss_pred CCEEEEEEECcCCHHHHHHHHHHHHHHHHhccCCCEEEEEEeCCCCHHHHHHHHHhCCceEeeccchhHHHHHHHHcCCC
Confidence 4689999999999999999999999999886 588999988863 3588899999
Q ss_pred ccceEEEEe--CCeEEEEEc
Q 005108 681 IVPTFKIYK--NGSRMKEIV 698 (714)
Q Consensus 681 ~~Pt~~~~~--~G~~~~~~~ 698 (714)
++|+++++. +|+++.+..
T Consensus 108 ~~Pt~~lid~~~G~i~~~~~ 127 (144)
T 1o73_A 108 SIPTLITINADTGAIIGTQA 127 (144)
T ss_dssp SSSEEEEEETTTCCEEESCH
T ss_pred CCCEEEEEECCCCeEEecch
Confidence 999999987 999887654
|
| >3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.69 E-value=1.7e-08 Score=97.73 Aligned_cols=83 Identities=18% Similarity=0.220 Sum_probs=70.9
Q ss_pred ceEEEeecCCCccccccchHHHHHHhhCCC--cEEEEEecc-----------------------------cCcchhhhCC
Q 005108 630 VSVVHFKSASNLHCKQISPYVETLCGRYPS--INFLKVDID-----------------------------ESPGVAHAEN 678 (714)
Q Consensus 630 ~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~--~~~~~vd~d-----------------------------~~~~l~~~~~ 678 (714)
+++|.||++||++|+...|.|.++..++.+ +.|+.|+++ ....+++.|+
T Consensus 61 ~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Vs~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~ 140 (218)
T 3u5r_E 61 ALLVAFISNRCPFVVLIREALAKFAGDYAGQGLAVVAINSNDAQAFPEETLERVGAEVKAYGYGFPYLKDASQSVAKAYG 140 (218)
T ss_dssp EEEEEECCSSCHHHHTTHHHHHHHHHHHTTTTEEEEEEECSCTTTCGGGSHHHHHHHHHHHTCCSCEEECTTCHHHHHHT
T ss_pred eEEEEEECCCCccHHHHHHHHHHHHHHHHhCCcEEEEEECCcccccccCCHHHHHHHHHHhCCCccEEECCccHHHHHcC
Confidence 599999999999999999999999999964 899999984 4567899999
Q ss_pred ccccceEEEE-eCCeEEEEEc---------CC-CHHHHHHHHhhh
Q 005108 679 VRIVPTFKIY-KNGSRMKEIV---------CP-SRDMLEHSVRHY 712 (714)
Q Consensus 679 v~~~Pt~~~~-~~G~~~~~~~---------g~-~~~~l~~~~~~~ 712 (714)
|..+|+++++ ++|+++.+-. +. +.++|++.|+++
T Consensus 141 v~~~P~~~liD~~G~i~~~g~~d~~~~~~~~~~~~~~l~~~i~~l 185 (218)
T 3u5r_E 141 AACTPDFFLYDRERRLVYHGQFDDARPGNGKDVTGADLRAAVDAV 185 (218)
T ss_dssp CCEESEEEEECTTCBEEEEECSSSCCTTSCCCCCCHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCcEEEeccccccccccccccCHHHHHHHHHHH
Confidence 9999999988 9999986532 23 578888888774
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=5e-07 Score=88.46 Aligned_cols=86 Identities=20% Similarity=0.132 Sum_probs=77.7
Q ss_pred cHHHHHHHHHHHhccCCC--CHHHHHHHHhHHHHHHHHHHHhHHhhC-----cCHHHHHHHHHHhhccCCCC-HHHHHHH
Q 005108 449 RFENAVTAAEKAGQIDPR--NVEVAVLLNNVKLVARARARGNDLFKS-----ERFTEACQAYGEGLRFDPSN-SVLYCNR 520 (714)
Q Consensus 449 ~~~~A~~~~~~al~~~p~--~~~~~~~l~~l~~~~~~~~~g~~~~~~-----g~~~~A~~~~~~al~~~p~~-~~~~~~l 520 (714)
...+|...++++++++|+ +..+|..+ |.+|... |+.++|.++|+++++++|+. ...++.+
T Consensus 178 ~l~~A~a~lerAleLDP~~~~GsA~~~L------------G~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~Y 245 (301)
T 3u64_A 178 TVHAAVMMLERACDLWPSYQEGAVWNVL------------TKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITY 245 (301)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHHHHHHHH------------HHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCcccCHHHHHH------------HHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHH
Confidence 368999999999999999 55577766 8889985 99999999999999999975 9999999
Q ss_pred HHHHHH-hCCHHHHHHHHHHHHHhCCC
Q 005108 521 AACWFK-LGQWERSVEDSNQALLIQPN 546 (714)
Q Consensus 521 a~~~~~-~g~~~~A~~~~~~al~~~p~ 546 (714)
|..++. .|++++|.+++++++..+|.
T Consensus 246 A~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 246 ADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred HHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 999988 59999999999999998776
|
| >2k6v_A Putative cytochrome C oxidase assembly protein; thioredoxin fold, electron transfer protein, metal binding protein, electron transport; NMR {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.66 E-value=2.8e-08 Score=92.20 Aligned_cols=85 Identities=14% Similarity=0.149 Sum_probs=71.4
Q ss_pred CCceEEEeecCCCcc-ccccchHHHHHHhhCC-----CcEEEEEecccC----------------------------cch
Q 005108 628 PGVSVVHFKSASNLH-CKQISPYVETLCGRYP-----SINFLKVDIDES----------------------------PGV 673 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~-C~~~~p~l~~l~~~~~-----~~~~~~vd~d~~----------------------------~~l 673 (714)
.+++++.||+.||++ |+...|.+.++..++. ++.++.|++|.. ..+
T Consensus 35 gk~vll~f~~~~C~~~C~~~~~~l~~~~~~~~~~~~~~v~vv~is~d~~~d~~~~~~~~~~~~~~~~~~l~d~~~~~~~~ 114 (172)
T 2k6v_A 35 DKVVLLFFGFTRCPDVCPTTLLALKRAYEKLPPKAQERVQVIFVSVDPERDPPEVADRYAKAFHPSFLGLSGSPEAVREA 114 (172)
T ss_dssp TSEEEEEEECTTCSSHHHHHHHHHHHHHTTSCHHHHTTEEEEEEESCTTTCCHHHHHHHHHHHCTTEEEECCCHHHHHHH
T ss_pred CCEEEEEEECCCCcchhHHHHHHHHHHHHHhhhhccCCEEEEEEEECCCCCCHHHHHHHHHHhCCCcEEEeCCHHHHHHH
Confidence 468999999999998 9999999999999997 699999998742 245
Q ss_pred hhhCC---------------ccccceEEEEeCCeEEEEEcCC---CHHHHHHHHhhh
Q 005108 674 AHAEN---------------VRIVPTFKIYKNGSRMKEIVCP---SRDMLEHSVRHY 712 (714)
Q Consensus 674 ~~~~~---------------v~~~Pt~~~~~~G~~~~~~~g~---~~~~l~~~~~~~ 712 (714)
++.|+ |..+|+++++.+|+++.++.|. +.++|.+.|+++
T Consensus 115 ~~~~gv~~~~~~~~~~~~~~i~~~P~~~lid~G~i~~~~~g~~~~~~~~l~~~l~~l 171 (172)
T 2k6v_A 115 AQTFGVFYQKSQYRGPGEYLVDHTATTFVVKEGRLVLLYSPDKAEATDRVVADLQAL 171 (172)
T ss_dssp HHHHTCCEEEEEEEETTEEEEEECCCEEEEETTEEEEEECHHHHTCHHHHHHHHHHC
T ss_pred HHhcCeEEEeccCCCCCCceEecCCEEEEEECCEEEEEECCCCCCCHHHHHHHHHHh
Confidence 55554 5789998888899999998877 788999988874
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.65 E-value=1.8e-07 Score=76.63 Aligned_cols=72 Identities=21% Similarity=0.074 Sum_probs=65.7
Q ss_pred CCCcHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Q 005108 238 CGGDAEELKRMGNELYRKGC---FGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNY 309 (714)
Q Consensus 238 ~p~~~~~~~~~g~~~~~~g~---~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 309 (714)
+|++++.+..+|.+++..++ .++|..+++++++.+|+++.+++.+|..+++.|+|++|+.+|+++++.+|..
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 57889999999999987766 7999999999999999999999999999999999999999999999999884
|
| >2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius rotundicauda} | Back alignment and structure |
|---|
Probab=98.10 E-value=2.8e-09 Score=95.65 Aligned_cols=71 Identities=15% Similarity=0.241 Sum_probs=61.6
Q ss_pred ceEEEeecCCCccccccchHHHHHHhhC----CCcEEEEEecccC-------------------------cchhhhCCcc
Q 005108 630 VSVVHFKSASNLHCKQISPYVETLCGRY----PSINFLKVDIDES-------------------------PGVAHAENVR 680 (714)
Q Consensus 630 ~~vv~f~a~~c~~C~~~~p~l~~l~~~~----~~~~~~~vd~d~~-------------------------~~l~~~~~v~ 680 (714)
++++.||++||++|+.+.|.+.++..++ +++.++.|++++. ..+++.|+|.
T Consensus 28 ~vll~F~a~wC~~C~~~~~~l~~~~~~~~~~~~~~~v~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 107 (143)
T 2lus_A 28 IIGFYFSAHWCPPCRGFTPILADMYSELVDDSAPFEIIFVSSDRSEDDMFQYMMESHGDWLAIPYRSGPASNVTAKYGIT 107 (143)
Confidence 8999999999999999999999999888 4688888888765 3689999999
Q ss_pred ccceEEEE-eCCeEEEEEcCC
Q 005108 681 IVPTFKIY-KNGSRMKEIVCP 700 (714)
Q Consensus 681 ~~Pt~~~~-~~G~~~~~~~g~ 700 (714)
++|+++++ ++|+++.+..+.
T Consensus 108 ~~P~~~lid~~G~i~~~~~~~ 128 (143)
T 2lus_A 108 GIPALVIVKKDGTLISMNGRG 128 (143)
Confidence 99999888 599998875433
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=98.65 E-value=4.7e-07 Score=92.55 Aligned_cols=131 Identities=12% Similarity=0.104 Sum_probs=100.2
Q ss_pred HHHHHHHHcCC---HHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCc-----------HHHHHHH
Q 005108 391 CRVEALLKLHQ---LEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGR-----------FENAVTA 456 (714)
Q Consensus 391 ~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-----------~~~A~~~ 456 (714)
..|..++..+. +.+|+.+|+++++++|++ +.+|..++.+|..... ...|+..
T Consensus 201 Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~--------------a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a 266 (372)
T 3ly7_A 201 YQAHDYLLHGDDKSLNRASELLGEIVQSSPEF--------------TYARAEKALVDIVRHSQHPLDEKQLAALNTEIDN 266 (372)
T ss_dssp HHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTC--------------HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCC--------------HHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHH
Confidence 35666655443 578999999999999998 6666666666643211 1112221
Q ss_pred HHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHH
Q 005108 457 AEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVED 536 (714)
Q Consensus 457 ~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 536 (714)
..++..+|.++.++..+ +..+...|++++|+..+++++.++| +...|..+|.++...|++++|++.
T Consensus 267 -~~a~~~~~~~a~~~~al------------al~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~ 332 (372)
T 3ly7_A 267 -IVTLPELNNLSIIYQIK------------AVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADA 332 (372)
T ss_dssp -HHTCGGGTTCHHHHHHH------------HHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred -HHhcccCCcCHHHHHHH------------HHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHH
Confidence 12346778888888766 7778888999999999999999997 577888999999999999999999
Q ss_pred HHHHHHhCCCCHH
Q 005108 537 SNQALLIQPNYTK 549 (714)
Q Consensus 537 ~~~al~~~p~~~~ 549 (714)
|++|+.++|....
T Consensus 333 ~~~AlrL~P~~~t 345 (372)
T 3ly7_A 333 YLTAFNLRPGANT 345 (372)
T ss_dssp HHHHHHHSCSHHH
T ss_pred HHHHHhcCCCcCh
Confidence 9999999998753
|
| >1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC, oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=98.60 E-value=6.4e-08 Score=91.24 Aligned_cols=85 Identities=15% Similarity=0.100 Sum_probs=73.4
Q ss_pred CCceEEEee-cCCCccccccchHHHHHHhhCC--CcEEEEEeccc-------------------------CcchhhhCCc
Q 005108 628 PGVSVVHFK-SASNLHCKQISPYVETLCGRYP--SINFLKVDIDE-------------------------SPGVAHAENV 679 (714)
Q Consensus 628 ~~~~vv~f~-a~~c~~C~~~~p~l~~l~~~~~--~~~~~~vd~d~-------------------------~~~l~~~~~v 679 (714)
.+++++.|| +.||++|....|.+.++..++. ++.++.|++|. ..++++.|+|
T Consensus 31 gk~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v 110 (187)
T 1we0_A 31 GKWSIVVFYPADFSFVCPTELEDVQKEYAELKKLGVEVYSVSTDTHFVHKAWHENSPAVGSIEYIMIGDPSQTISRQFDV 110 (187)
T ss_dssp SSEEEEEECSCTTCSSCTHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHHSCHHHHTCCSEEEECTTCHHHHHTTC
T ss_pred CCCEEEEEECCCCCcchHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHHhccccCCCceEEECCchHHHHHhCC
Confidence 468999999 9999999999999999998885 68999998874 4567889999
Q ss_pred c------ccceEEEE-eCCeEEEEEcCC-----CHHHHHHHHhhh
Q 005108 680 R------IVPTFKIY-KNGSRMKEIVCP-----SRDMLEHSVRHY 712 (714)
Q Consensus 680 ~------~~Pt~~~~-~~G~~~~~~~g~-----~~~~l~~~~~~~ 712 (714)
. .+|+++++ ++|+++.+..|. +.++|.+.|+++
T Consensus 111 ~~~~~g~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l~~~l~~l 155 (187)
T 1we0_A 111 LNEETGLADRGTFIIDPDGVIQAIEINADGIGRDASTLINKVKAA 155 (187)
T ss_dssp EETTTTEECEEEEEECTTSBEEEEEEECTTSCCCTTHHHHHHHHH
T ss_pred CcCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHH
Confidence 9 99999888 999999998875 578888888764
|
| >3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=98.60 E-value=5e-08 Score=89.49 Aligned_cols=82 Identities=7% Similarity=-0.004 Sum_probs=67.7
Q ss_pred CCc-eEEEee-cCCCccccccchHHHHHHhhCC--CcEEEEEecc---------------------cCcchhhhCCccc-
Q 005108 628 PGV-SVVHFK-SASNLHCKQISPYVETLCGRYP--SINFLKVDID---------------------ESPGVAHAENVRI- 681 (714)
Q Consensus 628 ~~~-~vv~f~-a~~c~~C~~~~p~l~~l~~~~~--~~~~~~vd~d---------------------~~~~l~~~~~v~~- 681 (714)
.+. +++.|| +.||++|....|.+.++..++. ++.++.|++| ...++++.|+|.+
T Consensus 28 gk~~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~ 107 (161)
T 3drn_A 28 GKHNIVLYFYPKDDTPGSTREASAFRDNWDLLKDYDVVVIGVSSDDINSHKRFKEKYKLPFILVSDPDKKIRELYGAKGF 107 (161)
T ss_dssp TTSEEEEEECSCTTCHHHHHHHHHHHHTHHHHHTTCEEEEEEESCCHHHHHHHHHHTTCCSEEEECTTSHHHHHTTCCCS
T ss_pred CCCCEEEEEEcCCCCCchHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHHHhCCCceEEECCcHHHHHHcCCCCc
Confidence 345 899999 9999999999999999999985 4899999887 4667899999999
Q ss_pred ---cceEEEE-eCCeEEEEEcCC--CHHHHHHHH
Q 005108 682 ---VPTFKIY-KNGSRMKEIVCP--SRDMLEHSV 709 (714)
Q Consensus 682 ---~Pt~~~~-~~G~~~~~~~g~--~~~~l~~~~ 709 (714)
+|+++++ ++|+++....|. ..+.+++.+
T Consensus 108 ~~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~il 141 (161)
T 3drn_A 108 ILPARITFVIDKKGIIRHIYNSQMNPANHVNEAL 141 (161)
T ss_dssp SSCCCEEEEECTTSBEEEEEECSSCTTHHHHHHH
T ss_pred CcccceEEEECCCCEEEEEEecCCCCCcCHHHHH
Confidence 9988777 899999999993 333344333
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=98.59 E-value=6.5e-07 Score=75.18 Aligned_cols=84 Identities=10% Similarity=-0.086 Sum_probs=64.2
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHH
Q 005108 513 NSVLYCNRAACWFKLGQWERSVEDSNQALLIQ-------PNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIA 585 (714)
Q Consensus 513 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~ 585 (714)
++.-.+.+|..+++.|+|+.|+.+|++|++.. +....++..+|.++.++|++++|+.+++++++++|++..+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 34556778888888888888888888888752 34567888888888888888888888888888888888887
Q ss_pred HHHHHHHHHhh
Q 005108 586 ESLFHAQVSLK 596 (714)
Q Consensus 586 ~~L~~~~~~l~ 596 (714)
..+......+.
T Consensus 84 ~n~~~~~~~~~ 94 (104)
T 2v5f_A 84 GNLKYFEYIMA 94 (104)
T ss_dssp HHHHHHHHHHH
T ss_pred hhHHHHHHHHH
Confidence 77765554443
|
| >2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: c.47.1.24 | Back alignment and structure |
|---|
Probab=98.58 E-value=3.8e-08 Score=88.49 Aligned_cols=89 Identities=11% Similarity=0.156 Sum_probs=68.5
Q ss_pred hhhccCCCceEEEeecCCCccccccc------hHHHHHHhhCCCcEEEEEeccc--CcchhhhCCccccceEEEE-eC-C
Q 005108 622 RAAVSLPGVSVVHFKSASNLHCKQIS------PYVETLCGRYPSINFLKVDIDE--SPGVAHAENVRIVPTFKIY-KN-G 691 (714)
Q Consensus 622 ~~~i~~~~~~vv~f~a~~c~~C~~~~------p~l~~l~~~~~~~~~~~vd~d~--~~~l~~~~~v~~~Pt~~~~-~~-G 691 (714)
..+....++++|+|+++||..|+.+. |.+.++..+ ++.++++|++. ...+++.|+|.++|+++|+ .+ |
T Consensus 36 ~~Ak~~~K~vlvd~~a~wC~~C~~me~~vf~d~~V~~~l~~--~fv~v~~d~~~~~~~~l~~~y~v~~~P~~~fld~~~G 113 (153)
T 2dlx_A 36 ECGQMQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIRE--HFIFWQVYHDSEEGQRYIQFYKLGDFPYVSILDPRTG 113 (153)
T ss_dssp HHHHHHTCEEEEEEECSCTTTHHHHHHHTTTCHHHHHHHHH--TEEEEEEESSSHHHHHHHHHHTCCSSSEEEEECTTTC
T ss_pred HHHHHcCCeEEEEEECCCCHhHHHHHHHhcCCHHHHHHHHc--CeEEEEEecCCHhHHHHHHHcCCCCCCEEEEEeCCCC
Confidence 33444577999999999999999985 444444332 67888999975 3458899999999999998 55 8
Q ss_pred eEEEEEcCCCHHHHHHHHhhh
Q 005108 692 SRMKEIVCPSRDMLEHSVRHY 712 (714)
Q Consensus 692 ~~~~~~~g~~~~~l~~~~~~~ 712 (714)
+++.++.|.+.+++...|+++
T Consensus 114 ~~l~~~~g~~~~~fl~~L~~~ 134 (153)
T 2dlx_A 114 QKLVEWHQLDVSSFLDQVTGF 134 (153)
T ss_dssp CCCEEESSCCHHHHHHHHHHH
T ss_pred cEeeecCCCCHHHHHHHHHHH
Confidence 888887666888888777654
|
| >3cmi_A Peroxiredoxin HYR1; thioredoxin-like fold, oxidoreductase, peroxidase, redox-ACT center; 2.02A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.58 E-value=6.3e-08 Score=89.82 Aligned_cols=84 Identities=10% Similarity=0.062 Sum_probs=66.5
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhCC--CcEEEEEecc-------c----Ccchh--------------------
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRYP--SINFLKVDID-------E----SPGVA-------------------- 674 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~--~~~~~~vd~d-------~----~~~l~-------------------- 674 (714)
.+++++.||++||++|+ ..|.+.++..++. ++.++.|+++ + ..+.+
T Consensus 32 Gk~vll~F~a~wC~~C~-~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~d~~~~~~~~~~~~~~~~~p~~~d~d~~~~~ 110 (171)
T 3cmi_A 32 GKVVLIVNVASKCGFTP-QYKELEALYKRYKDEGFTIIGFPCNQFGHQEPGSDEEIAQFCQLNYGVTFPIMKKIDVNGGN 110 (171)
T ss_dssp TCEEEEEEEESSSCCHH-HHHHHHHHHHHHGGGTEEEEEEEECSCC------------------CCCSCBBCCCBSSSTT
T ss_pred CCEEEEEEEecCCCcch-hHHHHHHHHHHhccCCeEEEEEECcccCCCCCCCHHHHHHHHHhccCCCceEEeeccCCCcc
Confidence 46899999999999999 9999999999885 4889988764 1 01111
Q ss_pred ----------hhCCccccc------eEEEE-eCCeEEEEEcCC-CHHHHHHHHhhh
Q 005108 675 ----------HAENVRIVP------TFKIY-KNGSRMKEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 675 ----------~~~~v~~~P------t~~~~-~~G~~~~~~~g~-~~~~l~~~~~~~ 712 (714)
..|+|.++| +++++ ++|+++.++.|. +.+.|++.|+++
T Consensus 111 ~~~~~~~~~~~~~~v~~~P~i~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~i~~l 166 (171)
T 3cmi_A 111 EDPVYKFLKSQKSGMLGLRGIKWNFEKFLVDKKGKVYERYSSLTKPSSLSETIEEL 166 (171)
T ss_dssp BCHHHHHHHHHSCCSSSCCSCCSTTCEEEECSSSCEEEEECTTSCGGGGHHHHHHH
T ss_pred chHHHHHHHhccCCcCCCCcccccceEEEECCCCCEEEEeCCCCCHHHHHHHHHHH
Confidence 247899999 65555 999999999997 888898888775
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=98.56 E-value=3.9e-07 Score=97.24 Aligned_cols=103 Identities=12% Similarity=-0.002 Sum_probs=86.7
Q ss_pred HhHHhhCcCHHHHHHHHHHhhcc-----CCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-----CCCCH---HH
Q 005108 487 GNDLFKSERFTEACQAYGEGLRF-----DPSN---SVLYCNRAACWFKLGQWERSVEDSNQALLI-----QPNYT---KA 550 (714)
Q Consensus 487 g~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~---~~ 550 (714)
.......|+|++|+..|++++++ .|++ ...+.++|.+|..+|+|++|+.++++++++ .|+++ ..
T Consensus 305 ~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~ 384 (433)
T 3qww_A 305 FRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASM 384 (433)
T ss_dssp HHHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHH
Confidence 44445678999999999999984 4555 577889999999999999999999999974 45554 66
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHh-----CCCCHHHHHHHH
Q 005108 551 LLRRAASNSKLEKWADAVRDFEVLRRE-----LPDDNEIAESLF 589 (714)
Q Consensus 551 ~~~la~~~~~~g~~~eA~~~~~~al~~-----~p~~~~~~~~L~ 589 (714)
+++||.+|..+|++++|+.+|++|+++ .|+++.+.+...
T Consensus 385 l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~ 428 (433)
T 3qww_A 385 WLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQ 428 (433)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHH
Confidence 899999999999999999999999875 588888776544
|
| >2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system, oxidoreductase, structural proteomics in EURO spine; 2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=98.56 E-value=7.4e-08 Score=91.49 Aligned_cols=85 Identities=16% Similarity=0.100 Sum_probs=73.1
Q ss_pred CCceEEEee-cCCCccccccchHHHHHHhhCC--CcEEEEEeccc-------------------------CcchhhhCCc
Q 005108 628 PGVSVVHFK-SASNLHCKQISPYVETLCGRYP--SINFLKVDIDE-------------------------SPGVAHAENV 679 (714)
Q Consensus 628 ~~~~vv~f~-a~~c~~C~~~~p~l~~l~~~~~--~~~~~~vd~d~-------------------------~~~l~~~~~v 679 (714)
.+++++.|| +.||++|....|.+.++..++. ++.++.|++|. ...+++.|+|
T Consensus 45 gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v 124 (195)
T 2bmx_A 45 GKWRVVFFWPKDFTFVCPTEIAAFSKLNDEFEDRDAQILGVSIDSEFAHFQWRAQHNDLKTLPFPMLSDIKRELSQAAGV 124 (195)
T ss_dssp TCEEEEEECSCTTSCCCHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHHCTTGGGCCSCEEECTTSHHHHHHTC
T ss_pred CCcEEEEEEcCCCCCCcHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHhccccCCceeEEeCCchHHHHHhCC
Confidence 458999999 9999999999999999998885 58999998874 3457889999
Q ss_pred c-----ccceEEEE-eCCeEEEEEcCC-----CHHHHHHHHhhh
Q 005108 680 R-----IVPTFKIY-KNGSRMKEIVCP-----SRDMLEHSVRHY 712 (714)
Q Consensus 680 ~-----~~Pt~~~~-~~G~~~~~~~g~-----~~~~l~~~~~~~ 712 (714)
. .+|+++++ ++|+++.+..|. +.++|.+.|+++
T Consensus 125 ~~~~g~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l~~~l~~l 168 (195)
T 2bmx_A 125 LNADGVADRVTFIVDPNNEIQFVSATAGSVGRNVDEVLRVLDAL 168 (195)
T ss_dssp BCTTSSBCEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHH
T ss_pred cccCCCccceEEEEcCCCeEEEEEecCCCCCCCHHHHHHHHHHH
Confidence 9 99998888 899999998875 578888888775
|
| >1zof_A Alkyl hydroperoxide-reductase; decamer, toroide-shaped complex, oxidoreductase; 2.95A {Helicobacter pylori} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=98.56 E-value=1.1e-07 Score=90.47 Aligned_cols=85 Identities=13% Similarity=0.146 Sum_probs=72.2
Q ss_pred CCceEEEee-cCCCccccccchHHHHHHhhCC--CcEEEEEeccc----------------------------Ccchhhh
Q 005108 628 PGVSVVHFK-SASNLHCKQISPYVETLCGRYP--SINFLKVDIDE----------------------------SPGVAHA 676 (714)
Q Consensus 628 ~~~~vv~f~-a~~c~~C~~~~p~l~~l~~~~~--~~~~~~vd~d~----------------------------~~~l~~~ 676 (714)
.++++++|| +.||++|....|.+.++..++. ++.++.|++|. ..++++.
T Consensus 33 gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 112 (198)
T 1zof_A 33 KNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEKGFNVIGVSIDSEQVHFAWKNTPVEKGGIGQVSFPMVADITKSISRD 112 (198)
T ss_dssp SSEEEEEECSCTTCSSCCTHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCCCSSCEEECTTSHHHHH
T ss_pred CCcEEEEEECCCCCCchHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHhhhhcccccCceeEEEECCchHHHHH
Confidence 458999999 9999999999999999998874 58899998874 3467889
Q ss_pred CCcc-----ccceEEEE-eCCeEEEEEcCC-----CHHHHHHHHhhh
Q 005108 677 ENVR-----IVPTFKIY-KNGSRMKEIVCP-----SRDMLEHSVRHY 712 (714)
Q Consensus 677 ~~v~-----~~Pt~~~~-~~G~~~~~~~g~-----~~~~l~~~~~~~ 712 (714)
|+|. .+|+++++ ++|+++.+..|. +.++|.+.|+++
T Consensus 113 ~~v~~~~g~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l~~~l~~l 159 (198)
T 1zof_A 113 YDVLFEEAIALRGAFLIDKNMKVRHAVINDLPLGRNADEMLRMVDAL 159 (198)
T ss_dssp TTCEETTTEECEEEEEEETTTEEEEEEEESSSCCCHHHHHHHHHHHH
T ss_pred hCCcccCCcccceEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHH
Confidence 9999 99988777 899999998875 467888887764
|
| >2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione, dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei} | Back alignment and structure |
|---|
Probab=98.54 E-value=8.8e-08 Score=90.54 Aligned_cols=85 Identities=11% Similarity=0.044 Sum_probs=68.4
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhCC--CcEEEEEeccc-------Ccc----hh--------------------
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRYP--SINFLKVDIDE-------SPG----VA-------------------- 674 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~--~~~~~~vd~d~-------~~~----l~-------------------- 674 (714)
.+++++.||++||++|....|.+.++..++. ++.++.|++|+ .++ .+
T Consensus 48 Gk~vll~F~atwC~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~D~~~~~ 127 (190)
T 2vup_A 48 GSPLLIYNVASKCGYTKGGYETATTLYNKYKSQGFTVLAFPCNQFGGQEPGNEEEIKEFVCTKFKAEFPIMAKINVNGEN 127 (190)
T ss_dssp TSCEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTCEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSCBBCCCBSSSTT
T ss_pred CCEEEEEEecCCCCccHHHHHHHHHHHHHHhcCCeEEEEEEcCccCCCCCCCHHHHHHHHHHhcCCCeEEEeecccCccc
Confidence 4689999999999999999999999999886 49999998762 111 11
Q ss_pred ----------hhCCccccc------eEEEE-eCCeEEEEEcCC-CHHHHHHHHhhh
Q 005108 675 ----------HAENVRIVP------TFKIY-KNGSRMKEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 675 ----------~~~~v~~~P------t~~~~-~~G~~~~~~~g~-~~~~l~~~~~~~ 712 (714)
..|+|.++| +++++ ++|+++.++.|. +.++|++.|+++
T Consensus 128 ~~~~~~~l~~~~~~v~~~P~i~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~i~~l 183 (190)
T 2vup_A 128 AHPLYEYMKKTKPGILKTKAIKWNFTSFLIDRDGVPVERFSPGASVKDIEKKLIPL 183 (190)
T ss_dssp BCHHHHHHHHHSCCGGGCCSCCSTTCEEEECTTSCEEEEECTTCCHHHHHHHHHHH
T ss_pred ccHHHHHHHhhcCCcCCCccccccceEEEECCCCcEEEEECCCCCHHHHHHHHHHH
Confidence 125888999 55555 999999999998 899999888764
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.54 E-value=5.9e-07 Score=79.45 Aligned_cols=98 Identities=10% Similarity=0.019 Sum_probs=84.8
Q ss_pred cHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCc---CHHHHHHHHHHhhccC-C-CCHHHHHHHHHH
Q 005108 449 RFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSE---RFTEACQAYGEGLRFD-P-SNSVLYCNRAAC 523 (714)
Q Consensus 449 ~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g---~~~~A~~~~~~al~~~-p-~~~~~~~~la~~ 523 (714)
....+.+.|.+.++.++.+.+..+.+ |+++.+.+ ++++++..+++.++.+ | .+.++++++|..
T Consensus 13 ~l~~~~~~y~~e~~~~~~~~~~~F~y------------a~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~ 80 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGSVSKSTQFEY------------AWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 80 (152)
T ss_dssp HHHHHHHHHHHHHHTTCCCHHHHHHH------------HHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCCCcHHHHHHH------------HHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHH
Confidence 34567778888888888888888877 99999988 7779999999999998 7 568999999999
Q ss_pred HHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005108 524 WFKLGQWERSVEDSNQALLIQPNYTKALLRRAASN 558 (714)
Q Consensus 524 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 558 (714)
|+++|+|++|+++++++++++|++.++...+-.+-
T Consensus 81 ~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~Lk~~ie 115 (152)
T 1pc2_A 81 NYRLKEYEKALKYVRGLLQTEPQNNQAKELERLID 115 (152)
T ss_dssp HHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 99999999999999999999999988776554443
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=98.52 E-value=7.7e-07 Score=74.69 Aligned_cols=77 Identities=18% Similarity=0.209 Sum_probs=70.6
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHH
Q 005108 241 DAEELKRMGNELYRKGCFGEALSMYDKAISLA-------PRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAH 313 (714)
Q Consensus 241 ~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 313 (714)
++..++.+|..++..++|..|+..|++|++.. +....++..+|.+++++|++++|+.+++++++++|++..+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 56788999999999999999999999999863 34588999999999999999999999999999999999888
Q ss_pred HHHH
Q 005108 314 QRLG 317 (714)
Q Consensus 314 ~~la 317 (714)
.+++
T Consensus 84 ~n~~ 87 (104)
T 2v5f_A 84 GNLK 87 (104)
T ss_dssp HHHH
T ss_pred hhHH
Confidence 7776
|
| >3dwv_A Glutathione peroxidase-like protein; alpha beta, 3-layer(ABA) sandwich, glutaredoxin fold, oxidor peroxidase; 1.41A {Trypanosoma brucei} PDB: 2rm5_A 2rm6_A 3e0u_A | Back alignment and structure |
|---|
Probab=98.51 E-value=2.9e-07 Score=86.67 Aligned_cols=85 Identities=11% Similarity=0.054 Sum_probs=67.6
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhCC--CcEEEEEeccc--------Ccchh-----------------------
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRYP--SINFLKVDIDE--------SPGVA----------------------- 674 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~--~~~~~~vd~d~--------~~~l~----------------------- 674 (714)
.++++|+||++||++|....|.|.++..++. ++.++.|.+|+ .+++.
T Consensus 46 Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~~~vi~is~d~~~~~e~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~~ 125 (187)
T 3dwv_A 46 GSPLLIYNVASKCGYTKGGYETATTLYNKYKSQGFTVLAFPSNQFGGQEPGNEEEIKEFVCTKFKAEFPIMAKINVNGEN 125 (187)
T ss_dssp TSCEEEEEECCBCSCCTTHHHHHHHHHHHHGGGTCEEEEEEBCCCSSCSSSBTTHHHHSCCBCCCCSSCBBCCBCCSCC-
T ss_pred CCEEEEEEecCCCCCcHHHHHHHHHHHHHhhhCCeEEEEEECcccCCCCCCCHHHHHHHHHhccCCCCceeeccccCCcc
Confidence 4689999999999999999999999999986 48899888762 11110
Q ss_pred -------------hhCCccccc---eEEEE-eCCeEEEEEcCC-CHHHHHHHHhhh
Q 005108 675 -------------HAENVRIVP---TFKIY-KNGSRMKEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 675 -------------~~~~v~~~P---t~~~~-~~G~~~~~~~g~-~~~~l~~~~~~~ 712 (714)
..+++..+| +++++ ++|+++.++.|. +.++|++.|+++
T Consensus 126 ~~~~~~~l~~~~~~~~~~~~iP~~~~~~liD~~G~i~~~~~g~~~~~~l~~~i~~l 181 (187)
T 3dwv_A 126 AHPLYEYMKKTKPGILATKAIKWNFTSFLIDRDGVPVERFSPGASVKDIEEKLIPL 181 (187)
T ss_dssp CCHHHHHHHHHSCCSBSSSSCCSTTCEEEECTTSCEEEEECTTCCHHHHHHHHHHH
T ss_pred hhHHHHHHHhhcCCccCCCccccceeEEEECCCCCEEEEECCCCCHHHHHHHHHHH
Confidence 223455677 76666 999999999998 999999998875
|
| >2v1m_A Glutathione peroxidase; selenium, selenocysteine, oxidoreductase, lipid peroxidase, schistosoma detoxification pathway; 1.00A {Schistosoma mansoni} PDB: 2wgr_A | Back alignment and structure |
|---|
Probab=98.50 E-value=1.1e-07 Score=87.75 Aligned_cols=85 Identities=7% Similarity=0.045 Sum_probs=65.9
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhCC--CcEEEEEeccc-------Cc-ch----hh------------------
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRYP--SINFLKVDIDE-------SP-GV----AH------------------ 675 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~--~~~~~~vd~d~-------~~-~l----~~------------------ 675 (714)
.+++++.||++||++|....|.+.++..++. ++.++.|++|. .+ .+ .+
T Consensus 31 gk~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 110 (169)
T 2v1m_A 31 GHVCLIVNVACKCGATDKNYRQLQEMHTRLVGKGLRILAFPCNQFGGQEPWAEAEIKKFVTEKYGVQFDMFSKIKVNGSD 110 (169)
T ss_dssp TSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSEEBCCCCCSSTT
T ss_pred CCEEEEEEeeccCCchHHHHHHHHHHHHHhhcCCeEEEEEECCccCCCCCCCHHHHHHHHHHhcCCCCceEEEEeecCcc
Confidence 4689999999999999999999999999886 48999998753 10 11 01
Q ss_pred ---hC--------C-----ccccceEEEE-eCCeEEEEEcCC-CHHHHHHHHhhh
Q 005108 676 ---AE--------N-----VRIVPTFKIY-KNGSRMKEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 676 ---~~--------~-----v~~~Pt~~~~-~~G~~~~~~~g~-~~~~l~~~~~~~ 712 (714)
.| + |..+|+++++ ++|+++.++.|. +.++|++.|+++
T Consensus 111 ~~~~~~~l~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~l 165 (169)
T 2v1m_A 111 ADDLYKFLKSRQHGTLTNNIKWNFSKFLVDRQGQPVKRYSPTTAPYDIEGDIMEL 165 (169)
T ss_dssp SCHHHHHHHHHSCCSSSCSCCSTTCEEEECTTSCEEEEECTTSCGGGGHHHHHHH
T ss_pred ccHHHHHHHhhcCCccCCcccccceEEEECCCCCEEEEcCCCCCHHHHHHHHHHH
Confidence 11 4 4456876666 999999999998 888888888764
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=9.9e-07 Score=94.28 Aligned_cols=104 Identities=7% Similarity=0.016 Sum_probs=87.7
Q ss_pred HhHHhhCcCHHHHHHHHHHhhcc-----CCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-----CCCCH---HH
Q 005108 487 GNDLFKSERFTEACQAYGEGLRF-----DPSN---SVLYCNRAACWFKLGQWERSVEDSNQALLI-----QPNYT---KA 550 (714)
Q Consensus 487 g~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~---~~ 550 (714)
...+..+|+|++|+..|++++++ .|++ ...+.++|.+|..+|+|++|+.++++++++ .|+++ ..
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 44567889999999999999975 3444 578899999999999999999999999974 45554 66
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHh-----CCCCHHHHHHHHH
Q 005108 551 LLRRAASNSKLEKWADAVRDFEVLRRE-----LPDDNEIAESLFH 590 (714)
Q Consensus 551 ~~~la~~~~~~g~~~eA~~~~~~al~~-----~p~~~~~~~~L~~ 590 (714)
+++||.+|..+|++++|+.+|++|+++ .|+++.+.+.+..
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~ 418 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILL 418 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 899999999999999999999999875 6888887765443
|
| >1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A | Back alignment and structure |
|---|
Probab=98.50 E-value=1.8e-07 Score=85.62 Aligned_cols=83 Identities=10% Similarity=0.027 Sum_probs=68.4
Q ss_pred ceEEEee-cCCCccccccchHHHHHHhhCC--CcEEEEEeccc-----------------------CcchhhhCCcc---
Q 005108 630 VSVVHFK-SASNLHCKQISPYVETLCGRYP--SINFLKVDIDE-----------------------SPGVAHAENVR--- 680 (714)
Q Consensus 630 ~~vv~f~-a~~c~~C~~~~p~l~~l~~~~~--~~~~~~vd~d~-----------------------~~~l~~~~~v~--- 680 (714)
++++.|| +.||++|....|.+.++..++. ++.++.|++|. ...+++.|+|.
T Consensus 38 ~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~~~ 117 (160)
T 1xvw_A 38 NVLLVFFPLAFTGICQGELDQLRDHLPEFENDDSAALAISVGPPPTHKIWATQSGFTFPLLSDFWPHGAVSQAYGVFNEQ 117 (160)
T ss_dssp EEEEEECSCTTSSHHHHHHHHHHHTGGGTSSSSEEEEEEESCCHHHHHHHHHHHTCCSCEEECTTTTTHHHHHTTCEETT
T ss_pred CEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCcEEEEEeCCCHHHHHHHHHhcCCCceEEecCCcChHHHHHcCCcccc
Confidence 7899998 9999999999999999999984 58899998864 56789999999
Q ss_pred -ccc--eEE-EEeCCeEEEEEcCC-C----HHHHHHHHhhh
Q 005108 681 -IVP--TFK-IYKNGSRMKEIVCP-S----RDMLEHSVRHY 712 (714)
Q Consensus 681 -~~P--t~~-~~~~G~~~~~~~g~-~----~~~l~~~~~~~ 712 (714)
++| +++ |.++|+++.+..|. + .+++...|+++
T Consensus 118 ~~~p~~~~~lid~~G~i~~~~~g~~~~~~~~~~l~~~l~~l 158 (160)
T 1xvw_A 118 AGIANRGTFVVDRSGIIRFAEMKQPGEVRDQRLWTDALAAL 158 (160)
T ss_dssp TTEECSEEEEECTTSBEEEEEECCTTCCCCHHHHHHHHHHT
T ss_pred CCCeeeeEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 999 554 44999999999887 2 35566666654
|
| >3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=98.48 E-value=1.3e-07 Score=88.01 Aligned_cols=80 Identities=18% Similarity=0.243 Sum_probs=66.6
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEec----------------------------------------
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDI---------------------------------------- 667 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~---------------------------------------- 667 (714)
..++|+.|+..||++|+.+.|.+.++..+++++.++.+++
T Consensus 22 a~v~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~v~~~~~~~p~~~~~s~~aa~~~~~a~~~~~~~~~~~~lf~~~~~~~~~ 101 (175)
T 3gyk_A 22 GDVTVVEFFDYNCPYCRRAMAEVQGLVDADPNVRLVYREWPILGEGSDFAARAALAARQQGKYEAFHWALMGMSGKANET 101 (175)
T ss_dssp CSEEEEEEECTTCHHHHHHHHHHHHHHHHCTTEEEEEEECCCSCHHHHHHHHHHHHGGGGTCHHHHHHHHHTCSSCCSHH
T ss_pred CCEEEEEEECCCCccHHHHHHHHHHHHHhCCCEEEEEEeCCCCCCChHHHHHHHHHHHHHhHHHHHHHHHHhcCCCCCHH
Confidence 4578999999999999999999999999998877776663
Q ss_pred -----------------------------ccCcchhhhCCccccceEEEEeCCeEEEEEcCC-CHHHHHHHHhhh
Q 005108 668 -----------------------------DESPGVAHAENVRIVPTFKIYKNGSRMKEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 668 -----------------------------d~~~~l~~~~~v~~~Pt~~~~~~G~~~~~~~g~-~~~~l~~~~~~~ 712 (714)
+...++++++||.++|||+| ||+ .+.|. +.+.|++.|++.
T Consensus 102 ~l~~~a~~~Gld~~~~~~~~~~~~~~~~v~~~~~~a~~~gv~gtPt~~i--~g~---~~~G~~~~~~l~~~i~~~ 171 (175)
T 3gyk_A 102 GVLRIAREVGLDTEQLQRDMEAPEVTAHIAQSMALAQKLGFNGTPSFVV--EDA---LVPGFVEQSQLQDAVDRA 171 (175)
T ss_dssp HHHHHHHHTTCCHHHHHHHTTCHHHHHHHHHHHHHHHHHTCCSSSEEEE--TTE---EECSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHhChHHHHHHHHHHHHHHHcCCccCCEEEE--CCE---EeeCCCCHHHHHHHHHHH
Confidence 33445678899999999987 885 45688 999999998764
|
| >1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain swapping, electron transport; 2.69A {Corynebacterium ammoniagenes} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=98.48 E-value=1.3e-07 Score=74.05 Aligned_cols=69 Identities=10% Similarity=0.210 Sum_probs=57.3
Q ss_pred EEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCcchhh---hCCccccceEEEEeCCeEEEEEcCCCHHHHHHH
Q 005108 632 VVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAH---AENVRIVPTFKIYKNGSRMKEIVCPSRDMLEHS 708 (714)
Q Consensus 632 vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~l~~---~~~v~~~Pt~~~~~~G~~~~~~~g~~~~~l~~~ 708 (714)
++.|+++||++|+.+.+.++++ ++.|..+|+++.+++.. .+++..+|++++ +|+. +.|++.++|+++
T Consensus 3 i~~y~~~~C~~C~~~~~~l~~~-----~i~~~~~di~~~~~~~~~~~~~~~~~vP~l~~--~g~~---~~g~~~~~l~~~ 72 (75)
T 1r7h_A 3 ITLYTKPACVQCTATKKALDRA-----GLAYNTVDISLDDEARDYVMALGYVQAPVVEV--DGEH---WSGFRPERIKQL 72 (75)
T ss_dssp EEEEECTTCHHHHHHHHHHHHT-----TCCCEEEETTTCHHHHHHHHHTTCBCCCEEEE--TTEE---EESCCHHHHHHH
T ss_pred EEEEeCCCChHHHHHHHHHHHc-----CCCcEEEECCCCHHHHHHHHHcCCCccCEEEE--CCeE---EcCCCHHHHHHH
Confidence 5779999999999999998865 47788899998877665 899999999874 8864 568888999888
Q ss_pred Hh
Q 005108 709 VR 710 (714)
Q Consensus 709 ~~ 710 (714)
|+
T Consensus 73 l~ 74 (75)
T 1r7h_A 73 QA 74 (75)
T ss_dssp HC
T ss_pred Hh
Confidence 74
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=98.48 E-value=1.3e-05 Score=87.61 Aligned_cols=174 Identities=12% Similarity=-0.018 Sum_probs=124.7
Q ss_pred hHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC---------HHHHHHHhhccccCCCCCCCchhhhhh
Q 005108 358 CTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQ---------LEDAESSLSNIPKIEPSTVSSSQTRFF 428 (714)
Q Consensus 358 a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~---------~~~A~~~~~~al~~~p~~~~~~~~~~~ 428 (714)
...+.+.|++++|++.|+++.+.+-..+...|..+..++...+. +++|.++|+++....-..
T Consensus 33 id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~P--------- 103 (501)
T 4g26_A 33 LDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVP--------- 103 (501)
T ss_dssp HHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCC---------
T ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCC---------
Confidence 35578999999999999999998877677778777777765543 677888888776554321
Q ss_pred hhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhcc--CCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHh
Q 005108 429 GMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQI--DPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEG 506 (714)
Q Consensus 429 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~a 506 (714)
+..+|..+...|.+.|++++|+++|+++.+. .|+ ...|..+ -..|.+.|++++|.++|+++
T Consensus 104 ----d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd-~~tyn~l------------I~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 104 ----NEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPR-LRSYGPA------------LFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp ----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCC-HHHHHHH------------HHHHHHTTCHHHHHHHHHHH
T ss_pred ----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc-cceehHH------------HHHHHHCCCHHHHHHHHHHH
Confidence 1567888888888888888888888887754 343 3334333 56677888888888888887
Q ss_pred hccC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Q 005108 507 LRFD-PSNSVLYCNRAACWFKLGQWERSVEDSNQALLI--QPNYTKALLRRAASN 558 (714)
Q Consensus 507 l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~ 558 (714)
.+.. .-+...|..+..+|.+.|++++|.++|+++.+. .|+ ...+..+-..+
T Consensus 167 ~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps-~~T~~~l~~~F 220 (501)
T 4g26_A 167 VESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVS-KSTFDMIEEWF 220 (501)
T ss_dssp HHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBC-HHHHHHHHHHH
T ss_pred HhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcC-HHHHHHHHHHH
Confidence 7642 226677888888888888888888888887663 454 33443333333
|
| >1h75_A Glutaredoxin-like protein NRDH; electron transport, thioredoxin, redox protein; 1.7A {Escherichia coli} SCOP: c.47.1.1 | Back alignment and structure |
|---|
Probab=98.48 E-value=5.4e-08 Score=77.62 Aligned_cols=72 Identities=15% Similarity=0.262 Sum_probs=57.8
Q ss_pred EEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCcchhh---hCCccccceEEEEeCCeEEEEEcCCCHHHHHHH
Q 005108 632 VVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAH---AENVRIVPTFKIYKNGSRMKEIVCPSRDMLEHS 708 (714)
Q Consensus 632 vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~l~~---~~~v~~~Pt~~~~~~G~~~~~~~g~~~~~l~~~ 708 (714)
++.|+++||++|+.+.+.|+++ ++.|..+|+++.+++.+ .+++.++|++ +.+|+. +.|++.++|++.
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~~-----~i~~~~vdi~~~~~~~~~~~~~g~~~vP~~--~~~g~~---~~g~~~~~l~~~ 72 (81)
T 1h75_A 3 ITIYTRNDCVQCHATKRAMENR-----GFDFEMINVDRVPEAAEALRAQGFRQLPVV--IAGDLS---WSGFRPDMINRL 72 (81)
T ss_dssp EEEEECTTCHHHHHHHHHHHHT-----TCCCEEEETTTCHHHHHHHHHTTCCSSCEE--EETTEE---EESCCHHHHGGG
T ss_pred EEEEcCCCChhHHHHHHHHHHC-----CCCeEEEECCCCHHHHHHHHHhCCCccCEE--EECCEE---EecCCHHHHHHH
Confidence 6789999999999999998763 46788999998776654 4899999998 358874 457888889888
Q ss_pred Hhhhc
Q 005108 709 VRHYS 713 (714)
Q Consensus 709 ~~~~~ 713 (714)
|+++.
T Consensus 73 l~~~~ 77 (81)
T 1h75_A 73 HPAPH 77 (81)
T ss_dssp SCCC-
T ss_pred Hhccc
Confidence 87653
|
| >2p31_A CL683, glutathione peroxidase 7; thioredoxin fold, NPGPX, phospholipid hydroperoxidase, struc genomics, structural genomics consortium, SGC; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.47 E-value=1.1e-07 Score=89.04 Aligned_cols=85 Identities=13% Similarity=0.028 Sum_probs=67.7
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhCC--CcEEEEEeccc-------Ccc----hhh-------------------
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRYP--SINFLKVDIDE-------SPG----VAH------------------- 675 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~--~~~~~~vd~d~-------~~~----l~~------------------- 675 (714)
.+++++.||++||++|....|.|.++..++. ++.++.|++|+ .++ .++
T Consensus 49 Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~v~vv~vs~d~~~~~e~~~~~~~~~~~~~~~~~~~p~~~~~d~~g~~ 128 (181)
T 2p31_A 49 GSVSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAFPCNQFGQQEPDSNKEIESFARRTYSVSFPMFSKIAVTGTG 128 (181)
T ss_dssp TSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSCBBCCCCCSSTT
T ss_pred CCEEEEEEeccCCCCcHHHHHHHHHHHHHhhcCCEEEEEEECcCCCCCCCCCHHHHHHHHHhhcCCCceeEeecccCCcc
Confidence 4689999999999999999999999999886 38999998753 111 111
Q ss_pred -----hCCccccc-------e-EEEEeCCeEEEEEcCC-CHHHHHHHHhhh
Q 005108 676 -----AENVRIVP-------T-FKIYKNGSRMKEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 676 -----~~~v~~~P-------t-~~~~~~G~~~~~~~g~-~~~~l~~~~~~~ 712 (714)
.|.+..+| + ++|.++|+++.++.|. +.++|++.|+++
T Consensus 129 ~~~~~~~~~~~~P~~~~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~i~~l 179 (181)
T 2p31_A 129 AHPAFKYLAQTSGKEPTWNFWKYLVAPDGKVVGAWDPTVSVEEVRPQITAL 179 (181)
T ss_dssp SCHHHHHHHHHHSCCCCSTTCEEEECTTSCEEEEECTTSCHHHHHHHHHTT
T ss_pred chhhhhhhhhcCCCccccceeEEEEcCCCCEEEEeCCCCCHHHHHHHHHHH
Confidence 23467789 5 4555999999999998 999999999875
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=98.47 E-value=8.9e-06 Score=88.87 Aligned_cols=166 Identities=11% Similarity=-0.023 Sum_probs=134.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCC---------HHHHHHHHHHHHhcCC-CcHHH
Q 005108 244 ELKRMGNELYRKGCFGEALSMYDKAISLA-PRNAAFRSNRAAALTGLGR---------IGEAVKECEEAVRLDP-NYWRA 312 (714)
Q Consensus 244 ~~~~~g~~~~~~g~~~~Al~~~~~al~~~-p~~~~~~~~la~~~~~~g~---------~~~A~~~~~~al~~~p-~~~~a 312 (714)
.+...-..+.+.|++++|+++|+++.+.. .-+...|..+..++...+. +++|.+.|+++.+..- -+...
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t 107 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT 107 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHH
Confidence 45666788899999999999999998863 2366777777777765543 7899999999877542 25779
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhhcCC-CChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 005108 313 HQRLGSLLVRLGQVENARRHLCLSGQQ-ADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMC 391 (714)
Q Consensus 313 ~~~la~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~ 391 (714)
|..+...|.+.|++++|+++|+++... ..|+.. .+..+...+.+.|++++|.+.|+++.+.+-..+...|..
T Consensus 108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~-------tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~ 180 (501)
T 4g26_A 108 FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLR-------SYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAA 180 (501)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHH-------HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccc-------eehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHH
Confidence 999999999999999999999998762 333321 233344558899999999999999999988778889999
Q ss_pred HHHHHHHcCCHHHHHHHhhccccCC
Q 005108 392 RVEALLKLHQLEDAESSLSNIPKIE 416 (714)
Q Consensus 392 la~~~~~~g~~~~A~~~~~~al~~~ 416 (714)
+..+|.+.|++++|.++|+++.+..
T Consensus 181 Li~~~~~~g~~d~A~~ll~~Mr~~g 205 (501)
T 4g26_A 181 LLKVSMDTKNADKVYKTLQRLRDLV 205 (501)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHhhCCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999987644
|
| >2f8a_A Glutathione peroxidase 1; thioredoxin fold, structural genomics, structural genomics consortium, SGC, oxidoreductase; 1.50A {Homo sapiens} SCOP: c.47.1.10 PDB: 1gp1_A 2he3_A | Back alignment and structure |
|---|
Probab=98.44 E-value=2.5e-07 Score=88.62 Aligned_cols=85 Identities=8% Similarity=-0.009 Sum_probs=65.4
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhCC--CcEEEEEeccc-------C-cchh---h------hCC----------
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRYP--SINFLKVDIDE-------S-PGVA---H------AEN---------- 678 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~--~~~~~~vd~d~-------~-~~l~---~------~~~---------- 678 (714)
.++++|.||++||++|+...|.|+++..+|. ++.++.|++++ . +++. + .++
T Consensus 47 Gk~vlv~FwatwC~~C~~e~p~l~~l~~~~~~~g~~vv~v~~d~~~~~e~d~~~~i~~f~~~~~~~~~~~~~fp~l~d~d 126 (208)
T 2f8a_A 47 GKVLLIENVASLGGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQENAKNEEILNSLKYVRPGGGFEPNFMLFEKCE 126 (208)
T ss_dssp TSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTTTCSCHHHHHHHHHHTSSCTTCCCSSEEBCCCC
T ss_pred CCEEEEEEECCCCccHHHHHHHHHHHHHHccCCCeEEEEEECCcccccCCCCHHHHHHHHHhcccccccccceEEEEEee
Confidence 4689999999999999999999999999885 48899998751 1 1111 1 222
Q ss_pred -------------------------------------------ccccceEEEE-eCCeEEEEEcCC-CHHHHHHHHhhh
Q 005108 679 -------------------------------------------VRIVPTFKIY-KNGSRMKEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 679 -------------------------------------------v~~~Pt~~~~-~~G~~~~~~~g~-~~~~l~~~~~~~ 712 (714)
|..+|+.+++ ++|+++.++.|. +.++|++.|+++
T Consensus 127 ~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~tflID~~G~i~~~~~g~~~~~~l~~~I~~l 205 (208)
T 2f8a_A 127 VNGAGAHPLFAFLREALPAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGPDGVPLRRYSRRFQTIDIEPDIEAL 205 (208)
T ss_dssp CSSTTCCHHHHHHHHHSCSCTTCSSCCCSSGGGCCSSSCCTTCCCSTTCEEEECTTSCEEEEECTTSCGGGGHHHHHHH
T ss_pred cCCCCccHHHHHHHhcCCCccccchhhccccccccccccccCccccCceEEEEcCCCcEEEEeCCCCCHHHHHHHHHHH
Confidence 3445866555 999999999998 888898888775
|
| >2p5q_A Glutathione peroxidase 5; thioredoxin fold, oxidoreductase; 2.00A {Populus trichocarpa x populusdeltoides} PDB: 2p5r_A | Back alignment and structure |
|---|
Probab=98.42 E-value=1.7e-07 Score=86.74 Aligned_cols=85 Identities=11% Similarity=0.090 Sum_probs=67.2
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhCC--CcEEEEEeccc-------Cc-c---hhh-hC----------------
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRYP--SINFLKVDIDE-------SP-G---VAH-AE---------------- 677 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~--~~~~~~vd~d~-------~~-~---l~~-~~---------------- 677 (714)
.+++++.||++||++|....|.+.++..++. ++.++.|++|. .+ . .++ .+
T Consensus 32 gk~vll~f~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 111 (170)
T 2p5q_A 32 GKVLLIVNVASKCGMTNSNYAEMNQLYEKYKDQGLEILAFPCNQFGEEEPGTNDQITDFVCTRFKSEFPIFDKIDVNGEN 111 (170)
T ss_dssp TSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCTTTTCCCSCHHHHHHHHHHHTCCCSCBBCCCBSSSTT
T ss_pred CCEEEEEEEeccCCccHHHHHHHHHHHHHhccCCEEEEEEECCCCCCCCCCCHHHHHHHHHHhcCCCceeEeeeccCCCc
Confidence 4689999999999999999999999999886 48999998752 11 1 112 21
Q ss_pred -------------Cc--cccc---eEEEE-eCCeEEEEEcCC-CHHHHHHHHhhh
Q 005108 678 -------------NV--RIVP---TFKIY-KNGSRMKEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 678 -------------~v--~~~P---t~~~~-~~G~~~~~~~g~-~~~~l~~~~~~~ 712 (714)
+| ..+| +++++ ++|+++.++.|. +.++|++.|+++
T Consensus 112 ~~~~~~~l~~~~~~~~~~~~p~~~~~~lid~~G~i~~~~~g~~~~~~l~~~i~~l 166 (170)
T 2p5q_A 112 ASPLYRFLKLGKWGIFGDDIQWNFAKFLVNKDGQVVDRYYPTTSPLSLERDIKQL 166 (170)
T ss_dssp BCHHHHHHHTHHHHTTCSCCCSTTCEEEECTTSCEEEEECTTSCGGGGHHHHHHH
T ss_pred hHHHHHHHHhcCCCccCCcccccccEEEECCCCCEEEeeCCCCCHHHHHHHHHHH
Confidence 45 6789 66555 999999999998 888899988875
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=2.1e-06 Score=91.51 Aligned_cols=99 Identities=7% Similarity=0.007 Sum_probs=83.5
Q ss_pred HHHhCcHHHHHHHHHHHhc-----cCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhcc-----CCCC
Q 005108 444 EMALGRFENAVTAAEKAGQ-----IDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRF-----DPSN 513 (714)
Q Consensus 444 ~~~~g~~~~A~~~~~~al~-----~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~-----~p~~ 513 (714)
....|+|++|+.+++++++ +.|+++.....++++ |.+|..+|+|++|+.+|++++++ .|++
T Consensus 308 ~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nL---------a~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~H 378 (433)
T 3qww_A 308 AKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQA---------MGVCLYMQDWEGALKYGQKIIKPYSKHYPVYS 378 (433)
T ss_dssp HTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHH---------HHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSC
T ss_pred hhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHH---------HHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCC
Confidence 3456889999999999986 578888877766554 99999999999999999999975 3444
Q ss_pred ---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-----CCCCHHHH
Q 005108 514 ---SVLYCNRAACWFKLGQWERSVEDSNQALLI-----QPNYTKAL 551 (714)
Q Consensus 514 ---~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~ 551 (714)
...++++|.+|..+|++++|+.+|++|+++ .|+++.+.
T Consensus 379 p~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 424 (433)
T 3qww_A 379 LNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYIS 424 (433)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred hHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 678999999999999999999999999984 67877544
|
| >1xvq_A Thiol peroxidase; thioredoxin fold, structural genomics, PSI, protein structur initiative, TB structural genomics consortium, TBSGC; 1.75A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1y25_A | Back alignment and structure |
|---|
Probab=98.41 E-value=5.8e-07 Score=83.56 Aligned_cols=83 Identities=10% Similarity=0.066 Sum_probs=66.2
Q ss_pred CCceEEEeecCC-CccccccchHHHHHHhhCCCcEEEEEeccc----------------------CcchhhhCCcccc--
Q 005108 628 PGVSVVHFKSAS-NLHCKQISPYVETLCGRYPSINFLKVDIDE----------------------SPGVAHAENVRIV-- 682 (714)
Q Consensus 628 ~~~~vv~f~a~~-c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~----------------------~~~l~~~~~v~~~-- 682 (714)
.+++++.||+.| |++|....|.|.++..+ .++.|+.|++|. ...+++.|+|..+
T Consensus 44 gk~vvl~F~~t~~C~~C~~~~~~l~~l~~~-~~v~vv~Is~D~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~~ 122 (175)
T 1xvq_A 44 GKSVLLNIFPSVDTPVCATSVRTFDERAAA-SGATVLCVSKDLPFAQKRFCGAEGTENVMPASAFRDSFGEDYGVTIADG 122 (175)
T ss_dssp TSCEEEEECSCCCSSCCCHHHHHHHHHHHH-TTCEEEEEESSCHHHHTTCC------CEEEEECTTSSHHHHTTCBBCSS
T ss_pred CCEEEEEEEeCCCCchHHHHHHHHHHHHhh-cCCEEEEEECCCHHHHHHHHHHcCCCCceEeeCCHHHHHHHhCCccccc
Confidence 458999999999 99999999999999988 889999998872 3567889999988
Q ss_pred -------ceEEEE-eCCeEEEEEcC--C-CHHHHHHHHhh
Q 005108 683 -------PTFKIY-KNGSRMKEIVC--P-SRDMLEHSVRH 711 (714)
Q Consensus 683 -------Pt~~~~-~~G~~~~~~~g--~-~~~~l~~~~~~ 711 (714)
|+++++ ++|+++....| . ....+++.|+.
T Consensus 123 ~~~g~~~p~~~lid~~G~I~~~~~g~~~~~~~~~~~~l~~ 162 (175)
T 1xvq_A 123 PMAGLLARAIVVIGADGNVAYTELVPEIAQEPNYEAALAA 162 (175)
T ss_dssp TTTTSBCSEEEEECTTSBEEEEEECSBTTCCCCHHHHHHH
T ss_pred ccCCcccceEEEECCCCeEEEEEECCCcCCCCCHHHHHHH
Confidence 776666 89999999874 2 33345555544
|
| >2h01_A 2-Cys peroxiredoxin; thioredoxin peroxidase, structural genomics, SGC, structural genomics consortium, oxidoreductase; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=98.41 E-value=5.2e-07 Score=85.33 Aligned_cols=85 Identities=15% Similarity=0.210 Sum_probs=71.6
Q ss_pred CCceEEEee-cCCCccccccchHHHHHHhhC--CCcEEEEEeccc----------------------------Ccchhhh
Q 005108 628 PGVSVVHFK-SASNLHCKQISPYVETLCGRY--PSINFLKVDIDE----------------------------SPGVAHA 676 (714)
Q Consensus 628 ~~~~vv~f~-a~~c~~C~~~~p~l~~l~~~~--~~~~~~~vd~d~----------------------------~~~l~~~ 676 (714)
.+++++.|| +.||++|....|.|.++..++ .++.++.|++|. ..++++.
T Consensus 31 gk~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~ 110 (192)
T 2h01_A 31 KKYVLLYFYPLDFTFVCPSEIIALDKALDSFKERNVELLGCSVDSKFTHLAWKKTPLSQGGIGNIKHTLISDISKSIARS 110 (192)
T ss_dssp TCEEEEEECSCSSCSSCCHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSEEEECTTSHHHHH
T ss_pred CCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEeCCHHHHHHHHHhHHhhCCccCCCcCeEECCcHHHHHH
Confidence 458999999 999999999999999999888 568999988763 2457889
Q ss_pred CCcc-----ccceEEEE-eCCeEEEEEcCC-----CHHHHHHHHhhh
Q 005108 677 ENVR-----IVPTFKIY-KNGSRMKEIVCP-----SRDMLEHSVRHY 712 (714)
Q Consensus 677 ~~v~-----~~Pt~~~~-~~G~~~~~~~g~-----~~~~l~~~~~~~ 712 (714)
|+|. .+|+++++ ++|+++....|. +.+++.+.|+.+
T Consensus 111 ~gv~~~~g~~~P~~~liD~~G~i~~~~~g~~~~~~~~~~l~~~l~~l 157 (192)
T 2h01_A 111 YDVLFNESVALRAFVLIDKQGVVQHLLVNNLALGRSVDEILRLIDAL 157 (192)
T ss_dssp TTCEETTTEECCEEEEECTTSBEEEEEEGGGSSGGGHHHHHHHHHHH
T ss_pred hCCcCcCCceeeEEEEEcCCCEEEEEEeCCCCCCCCHHHHHHHHHHH
Confidence 9999 99999888 999999998874 467777777654
|
| >2obi_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase (GPX4); human GPX4, selenoprotein, thioredoxin-fold, anti-oxidatve defense system; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.39 E-value=2.4e-07 Score=86.95 Aligned_cols=85 Identities=20% Similarity=0.152 Sum_probs=66.0
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhCC--CcEEEEEeccc-------Cc------------------------chh
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRYP--SINFLKVDIDE-------SP------------------------GVA 674 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~--~~~~~~vd~d~-------~~------------------------~l~ 674 (714)
.+++++.||++||++|....|.|.++..++. ++.++.|++|. .+ ..+
T Consensus 47 gk~vll~F~atwC~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~e~~~~~~~~~~~~~~~~~~p~~~~~d~~~~~~ 126 (183)
T 2obi_A 47 GFVCIVTNVASQCGKTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQEPGSNEEIKEFAAGYNVKFDMFSKICVNGDDA 126 (183)
T ss_dssp TSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTCCCSCHHHHHHHHHTTTCCSEEBCCCCCSSTTS
T ss_pred CCEEEEEEeCCCCCCcHHHHHHHHHHHHHHhcCCeEEEEEECCCCCCCCCCCHHHHHHHHHHcCCCceEEeeeccCCcch
Confidence 4689999999999999999999999999886 48899998752 10 111
Q ss_pred h-hC----------C-----ccccceEEEE-eCCeEEEEEcCC-CHHHHHHHHhhh
Q 005108 675 H-AE----------N-----VRIVPTFKIY-KNGSRMKEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 675 ~-~~----------~-----v~~~Pt~~~~-~~G~~~~~~~g~-~~~~l~~~~~~~ 712 (714)
. .| + |..+|+++++ ++|+++.++.|. +.++|++.|+++
T Consensus 127 ~~~~~~l~~~~~~~g~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~l 182 (183)
T 2obi_A 127 HPLWKWMKIQPKGKGILGNAIKWNFTKFLIDKNGCVVKRYGPMEEPLVIEKDLPHY 182 (183)
T ss_dssp CHHHHHHHTSTTTCCSSSSSCCSTTCEEEECTTSCEEEEECTTSCTHHHHTTSGGG
T ss_pred hHHHHHhhccCCCCCcccccccccceEEEECCCCCEEEEeCCCCCHHHHHHHHHHh
Confidence 1 12 3 3446987666 999999999998 888898888764
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=1.7e-06 Score=92.44 Aligned_cols=113 Identities=11% Similarity=0.021 Sum_probs=89.4
Q ss_pred HHHHHHHHhCcHHHHHHHHHHHhcc-----CCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhcc----
Q 005108 439 VRAQIEMALGRFENAVTAAEKAGQI-----DPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRF---- 509 (714)
Q Consensus 439 ~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~---- 509 (714)
....-+..+|++++|++.+++++++ .|+++.....++++ |.+|..+|+|++|+.++++++++
T Consensus 292 ~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L---------~~~y~~~g~~~eA~~~~~~~L~i~~~~ 362 (429)
T 3qwp_A 292 KKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCA---------MDACINLGLLEEALFYGTRTMEPYRIF 362 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHH---------HHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHH---------HHHHHhhccHHHHHHHHHHHHHhHHHH
Confidence 3344566789999999999999864 57788776666554 99999999999999999999975
Q ss_pred -CCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-----CCCCHHH---HHHHHHHHHH
Q 005108 510 -DPSN---SVLYCNRAACWFKLGQWERSVEDSNQALLI-----QPNYTKA---LLRRAASNSK 560 (714)
Q Consensus 510 -~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~---~~~la~~~~~ 560 (714)
.|++ ...++++|.+|..+|++++|+.+|++|+++ .|+++.+ +.+|+.+...
T Consensus 363 lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e 425 (429)
T 3qwp_A 363 FPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDAN 425 (429)
T ss_dssp SCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHH
T ss_pred cCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Confidence 3444 678999999999999999999999999984 6777644 3445554433
|
| >1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer, peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=98.38 E-value=5.6e-07 Score=87.03 Aligned_cols=85 Identities=14% Similarity=0.119 Sum_probs=72.0
Q ss_pred CCceEEEee-cCCCccccccchHHHHHHhhC--CCcEEEEEeccc----------------------------Ccchhhh
Q 005108 628 PGVSVVHFK-SASNLHCKQISPYVETLCGRY--PSINFLKVDIDE----------------------------SPGVAHA 676 (714)
Q Consensus 628 ~~~~vv~f~-a~~c~~C~~~~p~l~~l~~~~--~~~~~~~vd~d~----------------------------~~~l~~~ 676 (714)
.+++++.|| +.||+.|....|.|.++..++ .++.++.|++|. ..++++.
T Consensus 56 Gk~vll~F~pa~~Cp~C~~~~~~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~i~~~ 135 (220)
T 1zye_A 56 GKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDVNCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISRD 135 (220)
T ss_dssp TSEEEEEECSCTTCSSSHHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSEEEECTTSHHHHH
T ss_pred CCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHhCCCcCCceEEEECCcHHHHHH
Confidence 368999999 999999999999999999988 578999888763 3457889
Q ss_pred CCcc------ccceEEEE-eCCeEEEEEcCC-----CHHHHHHHHhhh
Q 005108 677 ENVR------IVPTFKIY-KNGSRMKEIVCP-----SRDMLEHSVRHY 712 (714)
Q Consensus 677 ~~v~------~~Pt~~~~-~~G~~~~~~~g~-----~~~~l~~~~~~~ 712 (714)
|+|. .+|+++|+ ++|+++.+..|. +.+++.+.|+.+
T Consensus 136 ygv~~~~~g~~~P~~~liD~~G~I~~~~~g~~~~~~~~~ell~~l~~l 183 (220)
T 1zye_A 136 YGVLLEGPGLALRGLFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAF 183 (220)
T ss_dssp TTCEETTTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHH
T ss_pred hCCeecCCCcccceEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 9999 99999888 999999988775 457788777754
|
| >1kte_A Thioltransferase; redox-active center, electron transport, acetylation; 2.20A {Sus scrofa} SCOP: c.47.1.1 PDB: 1jhb_A 1b4q_A* | Back alignment and structure |
|---|
Probab=98.37 E-value=1.7e-07 Score=79.02 Aligned_cols=88 Identities=15% Similarity=0.150 Sum_probs=62.4
Q ss_pred HHhhhccCCCceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccC-------cchhhhCCccccceEEEEeCCe
Q 005108 620 QFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDES-------PGVAHAENVRIVPTFKIYKNGS 692 (714)
Q Consensus 620 ~~~~~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~-------~~l~~~~~v~~~Pt~~~~~~G~ 692 (714)
.++..+... .++.|+++||++|+.+.+.|+++...+++ |..+|++.. .++++.+++.++|++ |.+|+
T Consensus 4 ~~~~~i~~~--~v~~f~~~~C~~C~~~~~~L~~~~~~~~~--~~~vdi~~~~~~~~~~~~l~~~~g~~~vP~i--~~~g~ 77 (105)
T 1kte_A 4 FVNSKIQPG--KVVVFIKPTCPFCRKTQELLSQLPFKEGL--LEFVDITATSDTNEIQDYLQQLTGARTVPRV--FIGKE 77 (105)
T ss_dssp HHHHHCCTT--CEEEEECSSCHHHHHHHHHHHHSCBCTTS--EEEEEGGGSTTHHHHHHHHHHHHSCCCSCEE--EETTE
T ss_pred HHHhhcccC--CEEEEEcCCCHhHHHHHHHHHHcCCCCCc--cEEEEccCCCCHHHHHHHHHHHhCCCCcCeE--EECCE
Confidence 445555443 46779999999999999999988776665 566777765 357888999999997 45898
Q ss_pred EEEEE---cCC-CHHHHHHHHhhhc
Q 005108 693 RMKEI---VCP-SRDMLEHSVRHYS 713 (714)
Q Consensus 693 ~~~~~---~g~-~~~~l~~~~~~~~ 713 (714)
.+..+ .+. ...+|.+.|+..+
T Consensus 78 ~i~g~~~~~~~~~~g~L~~~l~~~g 102 (105)
T 1kte_A 78 CIGGCTDLESMHKRGELLTRLQQVG 102 (105)
T ss_dssp EEESHHHHHHHHHHTHHHHHHHHHT
T ss_pred EEeccHHHHHHHHCCcHHHHHHHcC
Confidence 76532 122 3466777776543
|
| >3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A | Back alignment and structure |
|---|
Probab=98.37 E-value=7.2e-07 Score=93.58 Aligned_cols=94 Identities=10% Similarity=0.123 Sum_probs=77.3
Q ss_pred hHHhhhccC-CCceEEEeecCCCccccccchHHHHHHhhCCC-cEEEEEecc--cCcchhhhCCccc--cceEEEEeCCe
Q 005108 619 EQFRAAVSL-PGVSVVHFKSASNLHCKQISPYVETLCGRYPS-INFLKVDID--ESPGVAHAENVRI--VPTFKIYKNGS 692 (714)
Q Consensus 619 e~~~~~i~~-~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~-~~~~~vd~d--~~~~l~~~~~v~~--~Pt~~~~~~G~ 692 (714)
+.+...+.. ...+++.|+++||++|+.+.|.+++++.++.+ +.|+.||++ +...+++.|||.. +|+++++.+|+
T Consensus 125 ~~~~~~~~~~~~~~~v~F~~~~~~~~~~~~~~~~~~A~~~~~~i~f~~vd~~~~~~~~~~~~fgi~~~~~P~~~~~~~~~ 204 (361)
T 3uem_A 125 QTAPKIFGGEIKTHILLFLPKSVSDYDGKLSNFKTAAESFKGKILFIFIDSDHTDNQRILEFFGLKKEECPAVRLITLEE 204 (361)
T ss_dssp TTHHHHHSCSCCEEEEEECCSSSSSHHHHHHHHHHHHGGGTTTCEEEEECTTSGGGHHHHHHTTCCTTTCSEEEEEECC-
T ss_pred ccHHHHhcCCCCcEEEEEEeCCchhHHHHHHHHHHHHHHccCceEEEEecCChHHHHHHHHHcCCCccCCccEEEEEcCC
Confidence 334444433 34668999999999999999999999999975 999999999 6889999999998 99999999877
Q ss_pred EEEEEc---CC-CHHHHHHHHhhh
Q 005108 693 RMKEIV---CP-SRDMLEHSVRHY 712 (714)
Q Consensus 693 ~~~~~~---g~-~~~~l~~~~~~~ 712 (714)
...++. |. +.+.|+++++.+
T Consensus 205 ~~~ky~~~~~~~~~~~l~~fi~~~ 228 (361)
T 3uem_A 205 EMTKYKPESEELTAERITEFCHRF 228 (361)
T ss_dssp -CCEECCSSCCCCHHHHHHHHHHH
T ss_pred cccccCCCccccCHHHHHHHHHHH
Confidence 666665 55 999999999875
|
| >1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase; 2.8A {Trypanosoma cruzi} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=98.36 E-value=3.7e-07 Score=87.09 Aligned_cols=85 Identities=12% Similarity=0.054 Sum_probs=71.7
Q ss_pred CCceEEEee-cCCCccccccchHHHHHHhhC--CCcEEEEEeccc----------------------------Ccchhhh
Q 005108 628 PGVSVVHFK-SASNLHCKQISPYVETLCGRY--PSINFLKVDIDE----------------------------SPGVAHA 676 (714)
Q Consensus 628 ~~~~vv~f~-a~~c~~C~~~~p~l~~l~~~~--~~~~~~~vd~d~----------------------------~~~l~~~ 676 (714)
.+++++.|| +.||+.|....|.|.++..++ .++.|+.|++|. ..++++.
T Consensus 36 gk~vvl~F~~~~~C~~C~~~~~~l~~l~~~~~~~~v~vi~Is~D~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~ 115 (202)
T 1uul_A 36 GKWLVLFFYPMDFTFVCPTEICQFSDRVKEFSDIGCEVLACSMDSEYSHLAWTSIERKRGGLGQMNIPILADKTKCIMKS 115 (202)
T ss_dssp TSEEEEEECSCTTCSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSCEEECTTCHHHHH
T ss_pred CCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhhCCCCCCceeEEECCchHHHHH
Confidence 458999999 999999999999999999988 469999998864 3467889
Q ss_pred CCcc------ccceEEEE-eCCeEEEEEcCC-----CHHHHHHHHhhh
Q 005108 677 ENVR------IVPTFKIY-KNGSRMKEIVCP-----SRDMLEHSVRHY 712 (714)
Q Consensus 677 ~~v~------~~Pt~~~~-~~G~~~~~~~g~-----~~~~l~~~~~~~ 712 (714)
|+|. .+|+++++ ++|+++.+..|. +.++|.+.|+.+
T Consensus 116 ygv~~~~~g~~~P~~~lid~~G~i~~~~~g~~~~~~~~~ell~~l~~l 163 (202)
T 1uul_A 116 YGVLKEEDGVAYRGLFIIDPKQNLRQITVNDLPVGRDVDEALRLVKAF 163 (202)
T ss_dssp HTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred cCCccCCCCceeeEEEEECCCCEEEEEEeCCCCCCCCHHHHHHHHHHh
Confidence 9999 99988777 999999988775 458888877764
|
| >2i81_A 2-Cys peroxiredoxin; structural genomics consortium, SGC, oxidoreductase; 2.45A {Plasmodium vivax sai-1} PDB: 2h66_A | Back alignment and structure |
|---|
Probab=98.34 E-value=6.1e-07 Score=86.22 Aligned_cols=85 Identities=14% Similarity=0.187 Sum_probs=70.9
Q ss_pred CCceEEEee-cCCCccccccchHHHHHHhhC--CCcEEEEEeccc----------------------------Ccchhhh
Q 005108 628 PGVSVVHFK-SASNLHCKQISPYVETLCGRY--PSINFLKVDIDE----------------------------SPGVAHA 676 (714)
Q Consensus 628 ~~~~vv~f~-a~~c~~C~~~~p~l~~l~~~~--~~~~~~~vd~d~----------------------------~~~l~~~ 676 (714)
.+.+++.|| +.||+.|....|.|.++..+| .++.++.|++|. ..+++++
T Consensus 52 gk~vvl~F~pa~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~~~~~ 131 (213)
T 2i81_A 52 KKYVLLYFYPLDFTFVCPSEIIALDKALDAFHERNVELLGCSVDSKYTHLAWKKTPLAKGGIGNIKHTLLSDITKSISKD 131 (213)
T ss_dssp TCEEEEEECSCTTSSHHHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHSSCGGGTCCCSCSSEEEECTTSHHHHH
T ss_pred CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhhCCccCCCceEEECCchHHHHH
Confidence 358999999 999999999999999999888 468888888764 3457889
Q ss_pred CCcc-----ccceEEEE-eCCeEEEEEcCC-----CHHHHHHHHhhh
Q 005108 677 ENVR-----IVPTFKIY-KNGSRMKEIVCP-----SRDMLEHSVRHY 712 (714)
Q Consensus 677 ~~v~-----~~Pt~~~~-~~G~~~~~~~g~-----~~~~l~~~~~~~ 712 (714)
|+|. .+|+++++ ++|+++.+..|. +.++|.+.|+.+
T Consensus 132 ygv~~~~g~~~p~~~lID~~G~i~~~~~~~~~~~~~~~ell~~l~~l 178 (213)
T 2i81_A 132 YNVLFDDSVSLRAFVLIDMNGIVQHLLVNNLAIGRSVDEILRIIDAI 178 (213)
T ss_dssp TTCEETTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHH
T ss_pred hCCccccCCcccEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHH
Confidence 9999 89987777 999999998764 478888887764
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=98.33 E-value=4.2e-06 Score=71.15 Aligned_cols=104 Identities=13% Similarity=0.102 Sum_probs=89.2
Q ss_pred cCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHH---HHHHHHHHHHhC-C-CCHHHHHHHHHHHHHhccHHHHH
Q 005108 494 ERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWER---SVEDSNQALLIQ-P-NYTKALLRRAASNSKLEKWADAV 568 (714)
Q Consensus 494 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~---A~~~~~~al~~~-p-~~~~~~~~la~~~~~~g~~~eA~ 568 (714)
.....+.+.|.+.+..++....+.+++|+++.+..+..+ ++..++..++.+ | ..-+.+|.+|..++++|+|++|.
T Consensus 15 ~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 445667777888888778889999999999999887666 999999998876 5 45689999999999999999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHhhh
Q 005108 569 RDFEVLRRELPDDNEIAESLFHAQVSLKK 597 (714)
Q Consensus 569 ~~~~~al~~~p~~~~~~~~L~~~~~~l~~ 597 (714)
.+++.+++..|+|..+......+...+.+
T Consensus 95 ~~~~~lL~~eP~n~QA~~Lk~~i~~~i~k 123 (126)
T 1nzn_A 95 KYVRGLLQTEPQNNQAKELERLIDKAMKK 123 (126)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999998887777666543
|
| >2jsy_A Probable thiol peroxidase; solution structure, antioxidant, oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A | Back alignment and structure |
|---|
Probab=98.33 E-value=1.2e-06 Score=80.73 Aligned_cols=85 Identities=11% Similarity=0.122 Sum_probs=69.5
Q ss_pred CCceEEEeecCC-CccccccchHHHHHHhhCCCcEEEEEeccc-----------------------CcchhhhCCccc--
Q 005108 628 PGVSVVHFKSAS-NLHCKQISPYVETLCGRYPSINFLKVDIDE-----------------------SPGVAHAENVRI-- 681 (714)
Q Consensus 628 ~~~~vv~f~a~~-c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~-----------------------~~~l~~~~~v~~-- 681 (714)
.+++++.||+.| |++|+...|.+.++..++.++.++.|++|. ..++++.|+|..
T Consensus 44 gk~~vl~F~~~~~C~~C~~~~~~l~~l~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~v~~~~ 123 (167)
T 2jsy_A 44 GKVTIISVIPSIDTGVCDAQTRRFNEEAAKLGDVNVYTISADLPFAQARWCGANGIDKVETLSDHRDMSFGEAFGVYIKE 123 (167)
T ss_dssp TSCEEEEECSCSTTSHHHHTHHHHHHHHHHHSSCEEEEEECSSGGGTSCCGGGSSCTTEEEEEGGGTCHHHHHTTCBBTT
T ss_pred CCeEEEEEecCCCCCchHHHHHHHHHHHHHcCCCEEEEEECCCHHHHHHHHHhcCCCCceEeeCCchhHHHHHhCCcccc
Confidence 458999999999 999999999999999988779999988773 235677899987
Q ss_pred ----cceEEEE-eCCeEEEEEcCC------CHHHHHHHHhhh
Q 005108 682 ----VPTFKIY-KNGSRMKEIVCP------SRDMLEHSVRHY 712 (714)
Q Consensus 682 ----~Pt~~~~-~~G~~~~~~~g~------~~~~l~~~~~~~ 712 (714)
+|+++++ ++|+++.+..|. +.+++.+.|+++
T Consensus 124 ~g~~~p~~~lid~~G~i~~~~~g~~~~~~~~~~~l~~~l~~l 165 (167)
T 2jsy_A 124 LRLLARSVFVLDENGKVVYAEYVSEATNHPNYEKPIEAAKAL 165 (167)
T ss_dssp TCSBCCEEEEECTTSCEEEEEECSBTTSCCCSHHHHHHHHHH
T ss_pred CCceeeEEEEEcCCCcEEEEEecCCcCCCCCHHHHHHHHHHh
Confidence 4987766 899999998764 347777777764
|
| >1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein disulfide isomerase, protein folding, redox protein, redox-active center; HET: MES; 1.90A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A 2iyj_A | Back alignment and structure |
|---|
Probab=98.31 E-value=3.2e-07 Score=88.46 Aligned_cols=79 Identities=10% Similarity=0.115 Sum_probs=61.6
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEe-----------------------------------------
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVD----------------------------------------- 666 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd----------------------------------------- 666 (714)
..++++.||++||++|+++.|.++++... ++.++.+.
T Consensus 86 ~k~~vv~F~d~~Cp~C~~~~~~l~~l~~~--~v~v~~~~~p~~~~~~~s~~~a~a~~~a~d~~~~~~~~~~~~~~~~~~~ 163 (216)
T 1eej_A 86 EKHVITVFTDITCGYCHKLHEQMADYNAL--GITVRYLAFPRQGLDSDAEKEMKAIWCAKDKNKAFDDVMAGKSVAPASC 163 (216)
T ss_dssp CCEEEEEEECTTCHHHHHHHTTHHHHHHT--TEEEEEEECCTTCSSSHHHHHHHHHHTSSSHHHHHHHHHTTCCCCCCCC
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHhC--CcEEEEEECCccCCCchHHHHHHHHHhccCHHHHHHHHHhCCCCChhHH
Confidence 45789999999999999999999998763 44444332
Q ss_pred ---cccCcchhhhCCccccceEEEEeCCeEEEEEcCC-CHHHHHHHHhhh
Q 005108 667 ---IDESPGVAHAENVRIVPTFKIYKNGSRMKEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 667 ---~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~~~~g~-~~~~l~~~~~~~ 712 (714)
+++..++++.+||.++||+ ++.||+ .+.|. +.++|++.|++.
T Consensus 164 ~~~v~~~~~l~~~~gV~gtPt~-v~~dG~---~~~G~~~~~~l~~~l~~~ 209 (216)
T 1eej_A 164 DVDIADHYALGVQLGVSGTPAV-VLSNGT---LVPGYQPPKEMKEFLDEH 209 (216)
T ss_dssp SCCHHHHHHHHHHHTCCSSSEE-ECTTSC---EEESCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCccCEE-EEcCCe---EecCCCCHHHHHHHHHHh
Confidence 2334567889999999998 567885 45688 899999988764
|
| >3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane, oxidoreductase, transmembrane; 1.80A {Homo sapiens} SCOP: c.47.1.0 PDB: 3cyn_A | Back alignment and structure |
|---|
Probab=98.30 E-value=4.6e-07 Score=84.68 Aligned_cols=84 Identities=12% Similarity=0.109 Sum_probs=62.8
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhCCC--cEEEEEeccc-------Cc----chhhh-CCc--------------
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRYPS--INFLKVDIDE-------SP----GVAHA-ENV-------------- 679 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~--~~~~~vd~d~-------~~----~l~~~-~~v-------------- 679 (714)
+++++|+||++||++|....|.|.++..+|.+ +.++.|.++. .+ +.++. +++
T Consensus 38 Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~~~vi~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 117 (180)
T 3kij_A 38 GKVSLVVNVASDCQLTDRNYLGLKELHKEFGPSHFSVLAFPCNQFGESEPRPSKEVESFARKNYGVTFPIFHKIKILGSE 117 (180)
T ss_dssp TSEEEEEEECSSSTTHHHHHHHHHHHHHHHTTTSEEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSCBBCCCCCSSTT
T ss_pred CCEEEEEEEecCCCCcHHHHHHHHHHHHHhccCCeEEEEEECCccccCCCCCHHHHHHHHHHhcCCCCceeeeeeccCcc
Confidence 45899999999999999999999999999864 8888887653 11 12223 221
Q ss_pred ------------cccce-----EEEEeCCeEEEEEcCC-CHHHHHHHHhh
Q 005108 680 ------------RIVPT-----FKIYKNGSRMKEIVCP-SRDMLEHSVRH 711 (714)
Q Consensus 680 ------------~~~Pt-----~~~~~~G~~~~~~~g~-~~~~l~~~~~~ 711 (714)
..+|+ ++|.++|+++.++.|. +.+.|+..|++
T Consensus 118 ~~~~~~~~~~~~~~~p~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ 167 (180)
T 3kij_A 118 GEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFWRPEEPIEVIRPDIAA 167 (180)
T ss_dssp CCHHHHHHHHHHTCCCSSTTCEEEECTTSCEEEEECTTCCGGGTHHHHHH
T ss_pred ccHHHHHHHhcCCCCccccceEEEECCCCCEEEEECCCCCHHHHHHHHHH
Confidence 12665 5666999999999998 77776666654
|
| >2hze_A Glutaredoxin-1; thioredoxin fold, arsenic, dimethylarsenite., electron trans oxidoreductase; 1.80A {Ectromelia virus} PDB: 2hzf_A 2hze_B | Back alignment and structure |
|---|
Probab=98.28 E-value=1.8e-07 Score=80.06 Aligned_cols=88 Identities=14% Similarity=0.115 Sum_probs=62.0
Q ss_pred hHHhhhccCCCceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCc-------chhhhCCccccceEEEEeCC
Q 005108 619 EQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESP-------GVAHAENVRIVPTFKIYKNG 691 (714)
Q Consensus 619 e~~~~~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~-------~l~~~~~v~~~Pt~~~~~~G 691 (714)
+.++..+.. ..++.|+++||+.|+.+.+.|+++...++. |..+|+++.+ ++++.++++++|++++ +|
T Consensus 10 ~~~~~~i~~--~~vv~f~~~~Cp~C~~~~~~L~~~~~~~~~--~~~vdi~~~~~~~~~~~~l~~~~g~~~vP~v~i--~g 83 (114)
T 2hze_A 10 EFVQQRLAN--NKVTIFVKYTCPFCRNALDILNKFSFKRGA--YEIVDIKEFKPENELRDYFEQITGGKTVPRIFF--GK 83 (114)
T ss_dssp HHHHTTCCT--TCEEEEECTTCHHHHHHHHHHTTSCBCTTS--EEEEEGGGSSSHHHHHHHHHHHHSCCSSCEEEE--TT
T ss_pred HHHHHHhcc--CCEEEEEeCCChhHHHHHHHHHHcCCCcCc--eEEEEccCCCChHHHHHHHHHHhCCCCcCEEEE--CC
Confidence 444555543 357789999999999999998765433322 7888998875 7888999999998744 89
Q ss_pred eEEEEEc---CC-CHHHHHHHHhhh
Q 005108 692 SRMKEIV---CP-SRDMLEHSVRHY 712 (714)
Q Consensus 692 ~~~~~~~---g~-~~~~l~~~~~~~ 712 (714)
+.+..+. +. +..+|++.|+..
T Consensus 84 ~~igg~~~~~~~~~~~~L~~~L~~~ 108 (114)
T 2hze_A 84 TSIGGYSDLLEIDNMDALGDILSSI 108 (114)
T ss_dssp EEEESHHHHHHHHHTTCHHHHHHHT
T ss_pred EEEeCcHHHHHHHHCChHHHHHHHc
Confidence 8775432 22 335577777654
|
| >2b7k_A SCO1 protein; metallochaperone, cytochrome C oxidase, metal binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 PDB: 2b7j_A | Back alignment and structure |
|---|
Probab=98.28 E-value=9.1e-07 Score=84.20 Aligned_cols=84 Identities=10% Similarity=0.079 Sum_probs=62.7
Q ss_pred CCceEEEeecCCCcc-ccccchHHHHHHhhCC-----CcEEEEEeccc----------------------------Ccch
Q 005108 628 PGVSVVHFKSASNLH-CKQISPYVETLCGRYP-----SINFLKVDIDE----------------------------SPGV 673 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~-C~~~~p~l~~l~~~~~-----~~~~~~vd~d~----------------------------~~~l 673 (714)
.++++|.||++||++ |....|.|.++..++. ++.++.|++|. ...+
T Consensus 41 Gk~vlv~F~at~C~~vC~~~~~~l~~l~~~~~~~~~~~v~vv~Is~D~~~d~~~~~~~~~~~~~~~~~~l~~~~d~~~~~ 120 (200)
T 2b7k_A 41 GKFSIIYFGFSNCPDICPDELDKLGLWLNTLSSKYGITLQPLFITCDPARDSPAVLKEYLSDFHPSILGLTGTFDEVKNA 120 (200)
T ss_dssp TSCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHCCCCEEEEEESCTTTCCHHHHHHHHTTSCTTCEEEECCHHHHHHH
T ss_pred CCEEEEEEECCCCcchhHHHHHHHHHHHHHHHHhhCCceEEEEEECCCCCCCHHHHHHHHHHcCCCceEEeCCHHHHHHH
Confidence 468999999999998 9999999999766552 68899888872 1246
Q ss_pred hhhCCcc-ccc---------------e-EEEEeCCeEEEEEcCC-CHHHHHHHHhh
Q 005108 674 AHAENVR-IVP---------------T-FKIYKNGSRMKEIVCP-SRDMLEHSVRH 711 (714)
Q Consensus 674 ~~~~~v~-~~P---------------t-~~~~~~G~~~~~~~g~-~~~~l~~~~~~ 711 (714)
++.|+|. .+| + ++|.++|+++..+.|. +.+.+.+.|.+
T Consensus 121 ~~~~gv~~~~p~~~~~~~~~~~~~~~~~~liD~~G~i~~~~~g~~~~~~~~~~i~~ 176 (200)
T 2b7k_A 121 CKKYRVYFSTPPNVKPGQDYLVDHSIFFYLMDPEGQFVDALGRNYDEKTGVDKIVE 176 (200)
T ss_dssp HHHTTC--------------CTTTCCCEEEECTTSCEEEEECTTCCTTHHHHHHHH
T ss_pred HHHcCcEEeeccccCCCCCceeeecceEEEECCCCcEEEEeCCCCCHHHHHHHHHH
Confidence 7788887 454 4 4555999999999887 76666666654
|
| >2gs3_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase; GSHPX-4,phospholipid hydroperoxide; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.24 E-value=7.1e-07 Score=83.83 Aligned_cols=85 Identities=18% Similarity=0.142 Sum_probs=65.0
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhCC--CcEEEEEeccc----C-------cchhhh------------------
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRYP--SINFLKVDIDE----S-------PGVAHA------------------ 676 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~--~~~~~~vd~d~----~-------~~l~~~------------------ 676 (714)
.+++++.||++||++|....|.+.++..++. ++.++.|++|. . .+.++.
T Consensus 49 Gk~vlv~F~atwC~~C~~~~~~l~~l~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~~~ 128 (185)
T 2gs3_A 49 GFVCIVTNVASQGGKTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQEPGSNEEIKEFAAGYNVKFDMFSKICVNGDDA 128 (185)
T ss_dssp TSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCTTTTCCCSCHHHHHHHHHHTTCCSEEBCCCBSSSTTB
T ss_pred CCEEEEEEecCCCCchHHHHHHHHHHHHHhhcCCeEEEEEECcccCCCCCCCHHHHHHHHHHcCCCCeeeeeeccCChhh
Confidence 4689999999999999999999999999885 48899987652 0 011111
Q ss_pred ---C----------Cc-----cccceEEEE-eCCeEEEEEcCC-CHHHHHHHHhhh
Q 005108 677 ---E----------NV-----RIVPTFKIY-KNGSRMKEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 677 ---~----------~v-----~~~Pt~~~~-~~G~~~~~~~g~-~~~~l~~~~~~~ 712 (714)
| ++ +.+|+++++ ++|+++.++.|. +.++|++.|+++
T Consensus 129 ~~~~~~l~~~~~~~g~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~l 184 (185)
T 2gs3_A 129 HPLWKWMKIQPKGKGILGNAIKWNFTKFLIDKNGCVVKRYGPMEEPLVIEKDLPHY 184 (185)
T ss_dssp CHHHHHHTTSGGGCCSSSSSCCSSCCEEEECTTSCEEEEECTTSCGGGGGGGHHHH
T ss_pred hHHHHHHHhhcccccccCCcccccceEEEECCCCCEEEeeCCCCCHHHHHHHHHHh
Confidence 1 32 235877666 999999999998 888888888764
|
| >1t3b_A Thiol:disulfide interchange protein DSBC; oxidoreductase, protein disulfide isomerase, protein folding, redox protein; 2.50A {Haemophilus influenzae} SCOP: c.47.1.9 d.17.3.1 | Back alignment and structure |
|---|
Probab=98.23 E-value=5.5e-07 Score=86.36 Aligned_cols=80 Identities=13% Similarity=0.083 Sum_probs=63.0
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEe-----------------------------------------
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVD----------------------------------------- 666 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd----------------------------------------- 666 (714)
..++++.|+++||++|+++.|.++++... ++.+..+.
T Consensus 86 ~k~~vv~F~d~~Cp~C~~~~~~l~~~~~~--~v~v~~~~~p~~~~~~~s~~~a~~~~~a~d~~~a~~~~~~~~~~~~~~~ 163 (211)
T 1t3b_A 86 EKHVVTVFMDITCHYCHLLHQQLKEYNDL--GITVRYLAFPRAGMNNQTAKQMEAIWTAKDPVFALNEAEKGNLPKEVKT 163 (211)
T ss_dssp CSEEEEEEECTTCHHHHHHHTTHHHHHHT--TEEEEEEECCSSTTCSHHHHHHHHHHHSSSHHHHHHHHHTTCCCSSCCC
T ss_pred CCEEEEEEECCCCHhHHHHHHHHHHHHhC--CcEEEEEECCccCCCchHHHHHHHHHhCcCHHHHHHHHHcCCCCChHHH
Confidence 45789999999999999999999997653 45544332
Q ss_pred ---cccCcchhhhCCccccceEEEEeCCeEEEEEcCC-CHHHHHHHHhhhc
Q 005108 667 ---IDESPGVAHAENVRIVPTFKIYKNGSRMKEIVCP-SRDMLEHSVRHYS 713 (714)
Q Consensus 667 ---~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~~~~g~-~~~~l~~~~~~~~ 713 (714)
+++..++++.+||+++||+++ .||+ .+.|. +.++|+++|++..
T Consensus 164 ~~~v~~~~~l~~~~gV~gTPt~vi-~nG~---~~~G~~~~~~l~~~l~~~~ 210 (211)
T 1t3b_A 164 PNIVKKHYELGIQFGVRGTPSIVT-STGE---LIGGYLKPADLLRALEETA 210 (211)
T ss_dssp SSHHHHHHHHHHHHTCCSSCEEEC-TTSC---CCCSCCCHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHcCCCcCCEEEE-eCCE---EecCCCCHHHHHHHHHhcc
Confidence 223456788999999999988 8997 56788 9999999998753
|
| >1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A | Back alignment and structure |
|---|
Probab=98.22 E-value=1.8e-06 Score=80.08 Aligned_cols=85 Identities=14% Similarity=0.226 Sum_probs=66.4
Q ss_pred CCceEEEeecCCCc-cccccchHHHHHHhhCC----CcEEEEEeccc---Cc-------------------------chh
Q 005108 628 PGVSVVHFKSASNL-HCKQISPYVETLCGRYP----SINFLKVDIDE---SP-------------------------GVA 674 (714)
Q Consensus 628 ~~~~vv~f~a~~c~-~C~~~~p~l~~l~~~~~----~~~~~~vd~d~---~~-------------------------~l~ 674 (714)
.++++++||+.||+ +|....|.+.++..++. ++.++.|++|. .+ +++
T Consensus 33 gk~vll~f~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~d~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~ 112 (174)
T 1xzo_A 33 GEVWLADFIFTNCETICPPMTAHMTDLQKKLKAENIDVRIISFSVDPENDKPKQLKKFAANYPLSFDNWDFLTGYSQSEI 112 (174)
T ss_dssp TCCEEEEEECSCCSSCCCSHHHHHHHHHHHHHHTTCCCEEEEEESCTTTCCHHHHHHHHTTSCCCGGGEEEEBCSCHHHH
T ss_pred CCEEEEEEEcCCCcchhHHHHHHHHHHHHHhhhcCCcEEEEEEEeCCCCCCHHHHHHHHHHcCCCCcceEEEeCCCHHHH
Confidence 46899999999999 99999999999988774 38999998862 11 111
Q ss_pred hh----------------CCccccceEEEE-eCCeEEEEEcCC---CHHHHHHHHhhh
Q 005108 675 HA----------------ENVRIVPTFKIY-KNGSRMKEIVCP---SRDMLEHSVRHY 712 (714)
Q Consensus 675 ~~----------------~~v~~~Pt~~~~-~~G~~~~~~~g~---~~~~l~~~~~~~ 712 (714)
.. |++..+|+++++ ++|+++.++.|. +.++|.+.|+++
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~lid~~G~i~~~~~g~~~~~~~~l~~~l~~l 170 (174)
T 1xzo_A 113 EEFALKSFKAIVKKPEGEDQVIHQSSFYLVGPDGKVLKDYNGVENTPYDDIISDVKSA 170 (174)
T ss_dssp HHHHHHHHCCCCCCCSSCCSCCSCCEEEEECTTSEEEEEEESSSSCCHHHHHHHHHHH
T ss_pred HHHHHhhcCeeEeecCCCCeeeeeeEEEEECCCCeEEEEEcCCCCCCHHHHHHHHHHH
Confidence 11 346778976655 999999999997 378899888875
|
| >2cq9_A GLRX2 protein, glutaredoxin 2; glutathione-S-transferase, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.21 E-value=3.5e-07 Score=80.24 Aligned_cols=86 Identities=20% Similarity=0.211 Sum_probs=60.0
Q ss_pred hHHhhhccCCCceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccC---c----chhhhCCccccceEEEEeCC
Q 005108 619 EQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDES---P----GVAHAENVRIVPTFKIYKNG 691 (714)
Q Consensus 619 e~~~~~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~---~----~l~~~~~v~~~Pt~~~~~~G 691 (714)
+.+..++... . ++.|+++||++|+.+.+.|+++. +.|..+|++.. + ++++.+++..+|+++ .+|
T Consensus 18 ~~~~~~i~~~-~-vvvf~~~~Cp~C~~~~~~L~~~~-----i~~~~vdid~~~~~~~~~~~l~~~~g~~~vP~l~--i~G 88 (130)
T 2cq9_A 18 NQIQETISDN-C-VVIFSKTSCSYCTMAKKLFHDMN-----VNYKVVELDLLEYGNQFQDALYKMTGERTVPRIF--VNG 88 (130)
T ss_dssp HHHHHHHHHS-S-EEEEECSSCSHHHHHHHHHHHHT-----CCCEEEETTTSTTHHHHHHHHHHHHSSCCSSEEE--ETT
T ss_pred HHHHHHHcCC-c-EEEEEcCCChHHHHHHHHHHHcC-----CCcEEEECcCCcCcHHHHHHHHHHhCCCCcCEEE--ECC
Confidence 4455555443 2 44499999999999999998874 34566777765 3 377889999999984 499
Q ss_pred eEEEE---EcCC-CHHHHHHHHhhhc
Q 005108 692 SRMKE---IVCP-SRDMLEHSVRHYS 713 (714)
Q Consensus 692 ~~~~~---~~g~-~~~~l~~~~~~~~ 713 (714)
+.+.. +.+. ...+|.++|+.++
T Consensus 89 ~~igg~~~l~~~~~~~~L~~~L~~~g 114 (130)
T 2cq9_A 89 TFIGGATDTHRLHKEGKLLPLVHQCY 114 (130)
T ss_dssp EEEEEHHHHHHHHHHTSSHHHHHHHS
T ss_pred EEEcChHHHHHHHHcCcHHHHHHHcC
Confidence 87765 2333 4456677776653
|
| >3ztl_A Thioredoxin peroxidase; oxidoreductase, reductase, schistosomiasis, thioredoxin fold; 3.00A {Schistosoma mansoni} PDB: 3zvj_A 3zvj_D | Back alignment and structure |
|---|
Probab=98.17 E-value=2.7e-06 Score=82.32 Aligned_cols=84 Identities=13% Similarity=0.079 Sum_probs=68.3
Q ss_pred CCceEEEeec-CCCccccccchHHHHHHhhCC--CcEEEEEeccc----------------------------Ccchhhh
Q 005108 628 PGVSVVHFKS-ASNLHCKQISPYVETLCGRYP--SINFLKVDIDE----------------------------SPGVAHA 676 (714)
Q Consensus 628 ~~~~vv~f~a-~~c~~C~~~~p~l~~l~~~~~--~~~~~~vd~d~----------------------------~~~l~~~ 676 (714)
.++++|.||+ .||++|....|.|.++..+|. ++.|+.|.+|. ...++..
T Consensus 69 Gk~vll~F~a~~wC~~C~~~~p~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~ 148 (222)
T 3ztl_A 69 GKYVVLFFYPADFTFVCPTEIIAFSDQVEEFNSRNCQVIACSTDSQYSHLAWDNLDRKSGGLGHMKIPLLADRKQEISKA 148 (222)
T ss_dssp TSEEEEEECSCSSCSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHSCGGGTSCCSCSSCEEECSSSHHHHH
T ss_pred CCeEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHhhhhccccccceeEEeCCchHHHHH
Confidence 4689999997 999999999999999999984 58999888773 2356789
Q ss_pred CCcc------ccceEEEE-eCCeEEEEEcCC-----CHHHHHHHHhh
Q 005108 677 ENVR------IVPTFKIY-KNGSRMKEIVCP-----SRDMLEHSVRH 711 (714)
Q Consensus 677 ~~v~------~~Pt~~~~-~~G~~~~~~~g~-----~~~~l~~~~~~ 711 (714)
|+|. .+|+++++ ++|+++....|. ..+++.+.|+.
T Consensus 149 ygv~~~~~g~~~P~~~lID~~G~I~~~~~g~~~~~~~~~~il~~l~~ 195 (222)
T 3ztl_A 149 YGVFDEEDGNAFRGLFIIDPNGILRQITINDKPVGRSVDETLRLLDA 195 (222)
T ss_dssp TTCBCTTTSSBCEEEEEECTTSEEEEEEEECTTBCCCHHHHHHHHHH
T ss_pred cCCeecCCCCccceEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHH
Confidence 9999 89988777 999999988776 34555555554
|
| >2ht9_A Glutaredoxin-2; thioredoxin fold, iron-sulfur cluster, 2Fe2S, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: GSH; 1.90A {Homo sapiens} PDB: 2fls_A* | Back alignment and structure |
|---|
Probab=98.10 E-value=6.5e-07 Score=79.93 Aligned_cols=86 Identities=20% Similarity=0.210 Sum_probs=59.3
Q ss_pred hHHhhhccCCCceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccC---c----chhhhCCccccceEEEEeCC
Q 005108 619 EQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDES---P----GVAHAENVRIVPTFKIYKNG 691 (714)
Q Consensus 619 e~~~~~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~---~----~l~~~~~v~~~Pt~~~~~~G 691 (714)
+.+...+... .++.|+++||++|+++.+.|+++. +.|..+|++.. + ++++.+++.++|+++ .+|
T Consensus 40 ~~~~~~i~~~--~Vvvf~~~~Cp~C~~~k~~L~~~~-----i~~~~vdId~~~~~~~~~~~L~~~~g~~tvP~if--i~G 110 (146)
T 2ht9_A 40 NQIQETISDN--CVVIFSKTSCSYCTMAKKLFHDMN-----VNYKVVELDLLEYGNQFQDALYKMTGERTVPRIF--VNG 110 (146)
T ss_dssp HHHHHHHHHC--SEEEEECTTCHHHHHHHHHHHHHT-----CCCEEEEGGGCTTHHHHHHHHHHHHSCCCSCEEE--ETT
T ss_pred HHHHHHhcCC--CEEEEECCCChhHHHHHHHHHHcC-----CCeEEEECccCcCCHHHHHHHHHHhCCCCcCeEE--ECC
Confidence 4555555443 244499999999999999998874 34566777655 3 378889999999984 599
Q ss_pred eEEEEE---cCC-CHHHHHHHHhhhc
Q 005108 692 SRMKEI---VCP-SRDMLEHSVRHYS 713 (714)
Q Consensus 692 ~~~~~~---~g~-~~~~l~~~~~~~~ 713 (714)
+.+... .+. ...+|+.+|+..+
T Consensus 111 ~~igG~d~l~~l~~~g~L~~~L~~~g 136 (146)
T 2ht9_A 111 TFIGGATDTHRLHKEGKLLPLVHQCY 136 (146)
T ss_dssp EEEESHHHHHHHHHTTCHHHHHHHTT
T ss_pred EEEeCchHHHHHHHcChHHHHHHHcC
Confidence 876542 233 3445677776543
|
| >3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A | Back alignment and structure |
|---|
Probab=98.06 E-value=7.1e-06 Score=75.05 Aligned_cols=85 Identities=13% Similarity=0.056 Sum_probs=67.3
Q ss_pred CCceEEEeec-CCCccccccchHHHHHHhhCC--CcEEEEEeccc---------------------CcchhhhCCccc--
Q 005108 628 PGVSVVHFKS-ASNLHCKQISPYVETLCGRYP--SINFLKVDIDE---------------------SPGVAHAENVRI-- 681 (714)
Q Consensus 628 ~~~~vv~f~a-~~c~~C~~~~p~l~~l~~~~~--~~~~~~vd~d~---------------------~~~l~~~~~v~~-- 681 (714)
.+++++.||+ .||+.|....|.+.++..++. ++.++.|.+|. ..++++.|+|..
T Consensus 35 gk~~vl~F~~~~~c~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~~ 114 (163)
T 3gkn_A 35 GHWLVIYFYPKDSTPGATTEGLDFNALLPEFDKAGAKILGVSRDSVKSHDNFCAKQGFAFPLVSDGDEALCRAFDVIKEK 114 (163)
T ss_dssp TSCEEEEECSCTTSHHHHHHHHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHCCSSCEEECTTCHHHHHTTCEEEE
T ss_pred CCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHhCCCceEEECCcHHHHHHhCCcccc
Confidence 3478999998 999999999999999998884 58888888763 445788999987
Q ss_pred ----------cceEEEE-eCCeEEEEEcCC-C---HHHHHHHHhhh
Q 005108 682 ----------VPTFKIY-KNGSRMKEIVCP-S---RDMLEHSVRHY 712 (714)
Q Consensus 682 ----------~Pt~~~~-~~G~~~~~~~g~-~---~~~l~~~~~~~ 712 (714)
+|+++++ ++|+++..+.+. . .+++.+.|+++
T Consensus 115 ~~~~~~~~~~~p~~~lid~~G~i~~~~~~~~~~~~~~~il~~l~~l 160 (163)
T 3gkn_A 115 NMYGKQVLGIERSTFLLSPEGQVVQAWRKVKVAGHADAVLAALKAH 160 (163)
T ss_dssp EETTEEEEEECCEEEEECTTSCEEEEECSCCSTTHHHHHHHHHHHH
T ss_pred ccccccccCcceEEEEECCCCeEEEEEcCCCcccCHHHHHHHHHHH
Confidence 9998888 999999888665 2 35555555543
|
| >2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.05 E-value=5.7e-06 Score=66.98 Aligned_cols=75 Identities=21% Similarity=0.365 Sum_probs=59.1
Q ss_pred ceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCcchhhh-----CCccccceEEEEeCCeEEEEEcCCCHHH
Q 005108 630 VSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAHA-----ENVRIVPTFKIYKNGSRMKEIVCPSRDM 704 (714)
Q Consensus 630 ~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~l~~~-----~~v~~~Pt~~~~~~G~~~~~~~g~~~~~ 704 (714)
..|+.|..+||+.|.+....|++ .++.|..+|++++++..+. .|.+.+|+++ +.||+. ++||+.++
T Consensus 4 a~I~vYs~~~Cp~C~~aK~~L~~-----~gi~y~~idi~~d~~~~~~~~~~~~G~~tVP~I~-i~Dg~~---l~~~~~~e 74 (92)
T 2lqo_A 4 AALTIYTTSWCGYCLRLKTALTA-----NRIAYDEVDIEHNRAAAEFVGSVNGGNRTVPTVK-FADGST---LTNPSADE 74 (92)
T ss_dssp SCEEEEECTTCSSHHHHHHHHHH-----TTCCCEEEETTTCHHHHHHHHHHSSSSSCSCEEE-ETTSCE---EESCCHHH
T ss_pred CcEEEEcCCCCHhHHHHHHHHHh-----cCCceEEEEcCCCHHHHHHHHHHcCCCCEeCEEE-EeCCEE---EeCCCHHH
Confidence 35778999999999999888866 3577889999987765442 3789999865 478875 46899999
Q ss_pred HHHHHhhhc
Q 005108 705 LEHSVRHYS 713 (714)
Q Consensus 705 l~~~~~~~~ 713 (714)
|+..|.+++
T Consensus 75 l~~~L~el~ 83 (92)
T 2lqo_A 75 VKAKLVKIA 83 (92)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 999998864
|
| >2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin dependant, mitochondrial, antioxidant, oxidoreductase, redox-active center; 1.78A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.05 E-value=7.8e-06 Score=78.80 Aligned_cols=85 Identities=13% Similarity=0.171 Sum_probs=67.9
Q ss_pred CCceEEEee-cCCCccccccchHHHHHHhhC--CCcEEEEEeccc----------------------------Ccchhhh
Q 005108 628 PGVSVVHFK-SASNLHCKQISPYVETLCGRY--PSINFLKVDIDE----------------------------SPGVAHA 676 (714)
Q Consensus 628 ~~~~vv~f~-a~~c~~C~~~~p~l~~l~~~~--~~~~~~~vd~d~----------------------------~~~l~~~ 676 (714)
.+++++.|| +.||+.|....|.|.++..++ .++.++.|.+|. ...+++.
T Consensus 56 Gk~vvl~F~patwCp~C~~e~p~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~~~~~ 135 (221)
T 2c0d_A 56 QKYCCLLFYPLNYTFVCPTEIIEFNKHIKDFENKNVELLGISVDSVYSHLAWKNMPIEKGGIGNVEFTLVSDINKDISKN 135 (221)
T ss_dssp TCEEEEEECCCCTTTCCHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSEEEECTTSHHHHH
T ss_pred CCeEEEEEEcCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHhhhhcCccCCceEEEECCchHHHHH
Confidence 358999999 999999999999999998887 468888777653 1235678
Q ss_pred CCc-----cccceEEEE-eCCeEEEEEcCC-----CHHHHHHHHhhh
Q 005108 677 ENV-----RIVPTFKIY-KNGSRMKEIVCP-----SRDMLEHSVRHY 712 (714)
Q Consensus 677 ~~v-----~~~Pt~~~~-~~G~~~~~~~g~-----~~~~l~~~~~~~ 712 (714)
|+| ..+|+++++ ++|+++...+|. +.++|.+.|+.+
T Consensus 136 ygv~~~~g~~~P~~~lID~~G~I~~~~~g~~~~~~~~~ell~~l~~L 182 (221)
T 2c0d_A 136 YNVLYDNSFALRGLFIIDKNGCVRHQTVNDLPIGRNVQEVLRTIDSI 182 (221)
T ss_dssp TTCEETTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHH
T ss_pred cCCcccCCCccceEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHH
Confidence 898 479988877 899999988763 567888877764
|
| >2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=98.04 E-value=6.4e-06 Score=75.05 Aligned_cols=69 Identities=13% Similarity=0.051 Sum_probs=57.4
Q ss_pred ceEEEee-cCCCccccccchHHHHHHhhCC--CcEEEEEeccc---------------------CcchhhhCCccccc--
Q 005108 630 VSVVHFK-SASNLHCKQISPYVETLCGRYP--SINFLKVDIDE---------------------SPGVAHAENVRIVP-- 683 (714)
Q Consensus 630 ~~vv~f~-a~~c~~C~~~~p~l~~l~~~~~--~~~~~~vd~d~---------------------~~~l~~~~~v~~~P-- 683 (714)
++++.|| +.||+.|....|.|.++..++. + .++.|.+|. ..++++.|+|..+|
T Consensus 37 ~vvl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~-~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~p~~ 115 (159)
T 2a4v_A 37 VVVFFVYPRASTPGSTRQASGFRDNYQELKEYA-AVFGLSADSVTSQKKFQSKQNLPYHLLSDPKREFIGLLGAKKTPLS 115 (159)
T ss_dssp EEEEEECSSSSSHHHHHHHHHHHHHHHHHTTTC-EEEEEESCCHHHHHHHHHHHTCSSEEEECTTCHHHHHHTCBSSSSS
T ss_pred eEEEEEcCCCCCCCHHHHHHHHHHHHHHHHhCC-cEEEEeCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCCcccccC
Confidence 6788886 8999999999999999988875 4 677776643 44578899999999
Q ss_pred -----eEEEEeCCeEEEEEcCC
Q 005108 684 -----TFKIYKNGSRMKEIVCP 700 (714)
Q Consensus 684 -----t~~~~~~G~~~~~~~g~ 700 (714)
+++| ++|+++....|.
T Consensus 116 g~~~~~~li-~~G~i~~~~~g~ 136 (159)
T 2a4v_A 116 GSIRSHFIF-VDGKLKFKRVKI 136 (159)
T ss_dssp CBCCEEEEE-ETTEEEEEEESC
T ss_pred CccceEEEE-cCCEEEEEEccC
Confidence 6777 999999999887
|
| >4g2e_A Peroxiredoxin; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 1.40A {Sulfolobus tokodaii} PDB: 2ywn_A 3hjp_A | Back alignment and structure |
|---|
Probab=98.03 E-value=5.4e-06 Score=75.36 Aligned_cols=85 Identities=19% Similarity=0.201 Sum_probs=59.5
Q ss_pred CCceEEEee-cCCCccccccchHHHHHHhhCC--CcEEEEEeccc---------------------CcchhhhCCcc---
Q 005108 628 PGVSVVHFK-SASNLHCKQISPYVETLCGRYP--SINFLKVDIDE---------------------SPGVAHAENVR--- 680 (714)
Q Consensus 628 ~~~~vv~f~-a~~c~~C~~~~p~l~~l~~~~~--~~~~~~vd~d~---------------------~~~l~~~~~v~--- 680 (714)
.+.+++.|| +.||++|....|.+.++..++. ++.++-|.+|. ..+++++|||.
T Consensus 30 Gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~~~~~~v~vs~d~~~~~~~~~~~~~~~~p~l~D~~~~v~~~ygv~~~~ 109 (157)
T 4g2e_A 30 GKVVVLAFYPAAFTQVCTKEMCTFRDSMAKFNQVNAVVLGISVDPPFSNKAFKEHNKLNFTILSDYNREVVKKYNVAWEF 109 (157)
T ss_dssp TSCEEEEECSCTTCCC------CCSCGGGGGGGCSSEEEEEESSCHHHHHHHHHHTTCCSEEEECTTSHHHHHTTCEEEC
T ss_pred CCeEEEEecCCCCCCccccchhhcccccccccccCceEeeecccchhHHHHHHHHcCCcEEEEEcCCcHHHHHcCCcccc
Confidence 457888998 9999999999999988888774 57787777664 34567888884
Q ss_pred --------ccceEEEE-eCCeEEEEEcCC------CHHHHHHHHhhh
Q 005108 681 --------IVPTFKIY-KNGSRMKEIVCP------SRDMLEHSVRHY 712 (714)
Q Consensus 681 --------~~Pt~~~~-~~G~~~~~~~g~------~~~~l~~~~~~~ 712 (714)
..|+++++ ++|+++...++. +.+++.+.|+.+
T Consensus 110 ~~~~~~~~~~p~tflID~~G~I~~~~~~~~~~~~~~~~eil~~l~~L 156 (157)
T 4g2e_A 110 PALPGYVLAKRAVFVIDKEGKVRYKWVSDDPTKEPPYDEIEKVVKSL 156 (157)
T ss_dssp TTSTTCEEECEEEEEECTTSBEEEEEEESSTTCCCCHHHHHHHHHHT
T ss_pred ccCCCcceeeeeEEEECCCCEEEEEEECCCCCCCCCHHHHHHHHHHh
Confidence 46766666 999998876543 567888888765
|
| >1v58_A Thiol:disulfide interchange protein DSBG; reduced DSBG, redox protein, protein disulfide isomerase, thioredoxin fold; 1.70A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1v57_A 2h0i_A 2h0h_A 2h0g_A 2iy2_A | Back alignment and structure |
|---|
Probab=98.01 E-value=5.4e-06 Score=81.16 Aligned_cols=83 Identities=11% Similarity=0.125 Sum_probs=64.6
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEec----------------------------------------
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDI---------------------------------------- 667 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~---------------------------------------- 667 (714)
..++++.|+.+||+.|+++.+.+.++... .++.|..+.+
T Consensus 97 ak~~v~~F~D~~Cp~C~~~~~~l~~~~~~-g~v~v~~~~~p~~~~~s~~~a~a~~~a~d~~~~~~~~~~~~~~~~l~~~~ 175 (241)
T 1v58_A 97 APVIVYVFADPFCPYCKQFWQQARPWVDS-GKVQLRTLLVGVIKPESPATAAAILASKDPAKTWQQYEASGGKLKLNVPA 175 (241)
T ss_dssp CSEEEEEEECTTCHHHHHHHHHHHHHHHT-TSEEEEEEECCCSSTTHHHHHHHHHHSSSHHHHHHHHHHTTTCCCCCCCS
T ss_pred CCeEEEEEECCCChhHHHHHHHHHHHHhC-CcEEEEEEECCcCCCcHHHHHHHHHHccCHHHHHHHHHHHhccCCCCccc
Confidence 34689999999999999999999987765 3566655443
Q ss_pred ----------ccCcchhhhCCccccceEEEEe-CCeEEEEEcCC-CHHHHHHHHhhh
Q 005108 668 ----------DESPGVAHAENVRIVPTFKIYK-NGSRMKEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 668 ----------d~~~~l~~~~~v~~~Pt~~~~~-~G~~~~~~~g~-~~~~l~~~~~~~ 712 (714)
++..++++.+||.++||+++.. +|+. ..+.|. +.++|++.|+++
T Consensus 176 ~~~~~~~~~v~~~~~l~~~~gv~gtPt~vi~~~~G~~-~~~~G~~~~~~L~~~l~~~ 231 (241)
T 1v58_A 176 NVSTEQMKVLSDNEKLMDDLGANVTPAIYYMSKENTL-QQAVGLPDQKTLNIIMGNK 231 (241)
T ss_dssp SCCHHHHHHHHHHHHHHHHHTCCSSCEEEEEETTTEE-EEEESSCCHHHHHHHTTC-
T ss_pred cCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCE-EEecCCCCHHHHHHHHHHH
Confidence 1234467899999999999985 6864 677898 999999988764
|
| >3ic4_A Glutaredoxin (GRX-1); structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomic oxidoreductase; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=97.99 E-value=4.1e-06 Score=68.39 Aligned_cols=70 Identities=19% Similarity=0.300 Sum_probs=55.0
Q ss_pred eEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecc-----cC----cchhhhCCccccceEEEEeCCeEEEEEcCCC
Q 005108 631 SVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDID-----ES----PGVAHAENVRIVPTFKIYKNGSRMKEIVCPS 701 (714)
Q Consensus 631 ~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d-----~~----~~l~~~~~v~~~Pt~~~~~~G~~~~~~~g~~ 701 (714)
.++.|+.+||+.|+++.+.|+++. +.|-.+|++ +. +++.+.+++..+|++++ +|+. +.|++
T Consensus 13 ~v~ly~~~~Cp~C~~~~~~L~~~g-----i~~~~~~v~~~~~~~~~~~~~~l~~~~g~~~vP~l~~--~g~~---i~G~~ 82 (92)
T 3ic4_A 13 EVLMYGLSTCPHCKRTLEFLKREG-----VDFEVIWIDKLEGEERKKVIEKVHSISGSYSVPVVVK--GDKH---VLGYN 82 (92)
T ss_dssp SSEEEECTTCHHHHHHHHHHHHHT-----CCCEEEEGGGCCHHHHHHHHHHHHHHHSSSCSCEEEE--TTEE---EESCC
T ss_pred eEEEEECCCChHHHHHHHHHHHcC-----CCcEEEEeeeCCccchHHHHHHHHHhcCCCCcCEEEE--CCEE---EeCCC
Confidence 367789999999999999998874 334456665 33 66778889999999887 8853 56889
Q ss_pred HHHHHHHHh
Q 005108 702 RDMLEHSVR 710 (714)
Q Consensus 702 ~~~l~~~~~ 710 (714)
.++|+++|+
T Consensus 83 ~~~l~~~l~ 91 (92)
T 3ic4_A 83 EEKLKELIR 91 (92)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 999999885
|
| >3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond, redox-active center, transcription regulator; HET: MSE GOL; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=97.97 E-value=4.7e-06 Score=78.64 Aligned_cols=83 Identities=19% Similarity=0.229 Sum_probs=65.4
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhCCC-cEEEEEeccc-------------------------------------
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRYPS-INFLKVDIDE------------------------------------- 669 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~-~~~~~vd~d~------------------------------------- 669 (714)
..++|+.|+..||++|+.+.|.+.++..++++ +.|..+.+.-
T Consensus 25 ~~~~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~~v~~~~~p~~~~~~~~~aa~a~~aa~~~g~~~~~~~~lf~~~~~~~~~ 104 (192)
T 3h93_A 25 GKIEVVELFWYGCPHCYAFEPTIVPWSEKLPADVHFVRLPALFGGIWNVHGQMFLTLESMGVEHDVHNAVFEAIHKEHKK 104 (192)
T ss_dssp TSEEEEEEECTTCHHHHHHHHHHHHHHHTCCTTEEEEEEECCCSTHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHTSCCC
T ss_pred CCCEEEEEECCCChhHHHhhHHHHHHHHhCCCCeEEEEEehhhccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCcC
Confidence 45789999999999999999999999999985 6666554420
Q ss_pred ------------------------------------CcchhhhCCccccceEEEEeCCeEEEEEcCC-CHHHHHHHHhhh
Q 005108 670 ------------------------------------SPGVAHAENVRIVPTFKIYKNGSRMKEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 670 ------------------------------------~~~l~~~~~v~~~Pt~~~~~~G~~~~~~~g~-~~~~l~~~~~~~ 712 (714)
...++..+||.++|||+| ||+.+....|. +.+.|.+.|+.+
T Consensus 105 ~~~~~~l~~~a~~~Gld~~~~~~~~~~~~~~~~v~~~~~~a~~~gv~gtPt~~v--ng~~~~~~~G~~~~e~l~~~i~~l 182 (192)
T 3h93_A 105 LATPEEMADFLAGKGVDKEKFLSTYNSFAIKGQMEKAKKLAMAYQVTGVPTMVV--NGKYRFDIGSAGGPEETLKLADYL 182 (192)
T ss_dssp CCSHHHHHHHHHTTTCCHHHHHHHHTCHHHHHHHHHHHHHHHHHTCCSSSEEEE--TTTEEEEHHHHTSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHhhCHHHHHHHHHHHHHHHHhCCCCCCeEEE--CCEEEecccccCCHHHHHHHHHHH
Confidence 112356789999999987 99987766677 888888887764
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=97.95 E-value=0.00013 Score=61.96 Aligned_cols=99 Identities=9% Similarity=-0.002 Sum_probs=81.9
Q ss_pred CcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHH---HHHHHHHhhccC-C-CCHHHHHHHHH
Q 005108 448 GRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTE---ACQAYGEGLRFD-P-SNSVLYCNRAA 522 (714)
Q Consensus 448 g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~---A~~~~~~al~~~-p-~~~~~~~~la~ 522 (714)
.....+...|.+.+..++...+..+.+ |+++.+..+..+ ++.+++..++.+ | ..-+.++.+|.
T Consensus 15 ~~l~~~~~~y~~e~~~~~~s~~~~F~y------------Aw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAv 82 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGSVSKSTQFEY------------AWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAV 82 (126)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHH------------HHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCcHHHHHHH------------HHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence 344566677777777777788887766 899998887766 999999999987 5 46789999999
Q ss_pred HHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005108 523 CWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASN 558 (714)
Q Consensus 523 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 558 (714)
.++++|+|++|+.+++.+|++.|++.++......+-
T Consensus 83 g~yklg~Y~~A~~~~~~lL~~eP~n~QA~~Lk~~i~ 118 (126)
T 1nzn_A 83 GNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLID 118 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 999999999999999999999999998876555443
|
| >3a2v_A Probable peroxiredoxin; thioredoxin peroxidase, hydrogen peroxide, antioxidant, oxidoreductase, redox-active center; 1.65A {Aeropyrum pernix} PDB: 1x0r_A 2zct_A 2nvl_A 2e2g_A 2cv4_A* 3a5w_A 2e2m_A 3a2x_A 3a2w_A | Back alignment and structure |
|---|
Probab=97.94 E-value=5.6e-06 Score=80.84 Aligned_cols=83 Identities=12% Similarity=0.120 Sum_probs=68.6
Q ss_pred ceEEEeecCCCccccccchHHHHHHhhCC--CcEEEEEeccc---------------------------CcchhhhCCcc
Q 005108 630 VSVVHFKSASNLHCKQISPYVETLCGRYP--SINFLKVDIDE---------------------------SPGVAHAENVR 680 (714)
Q Consensus 630 ~~vv~f~a~~c~~C~~~~p~l~~l~~~~~--~~~~~~vd~d~---------------------------~~~l~~~~~v~ 680 (714)
++++.||+.||+.|....+.|.++..++. ++.++.|++|. ..+++..|+|.
T Consensus 36 vVL~~fpa~~CpvC~tEl~~l~~l~~ef~~~gv~VI~VS~Ds~~~~~~w~~~~~~~~~~~i~fPil~D~~~~ia~~ygv~ 115 (249)
T 3a2v_A 36 FVLFSHPADFTPVCTTEFVSFARRYEDFQRLGVDLIGLSVDSVFSHIKWKEWIERHIGVRIPFPIIADPQGTVARRLGLL 115 (249)
T ss_dssp EEEECCSCTTCHHHHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHHHHHHHTCCCCCSCEEECTTSHHHHHHTCC
T ss_pred EEEEEEcCCCCcChHHHHHHHHHHHHHHHhCCcEEEEEECCCHHHHHHHHHHHHHhcCCCCceeEEECCchHHHHHhCCc
Confidence 56678999999999999999999988885 68899888763 34578899998
Q ss_pred -------ccceEEEE-eCCeEEEEEcCC-----CHHHHHHHHhhh
Q 005108 681 -------IVPTFKIY-KNGSRMKEIVCP-----SRDMLEHSVRHY 712 (714)
Q Consensus 681 -------~~Pt~~~~-~~G~~~~~~~g~-----~~~~l~~~~~~~ 712 (714)
.+|+++|+ ++|+++..++|. +.++|...|+.+
T Consensus 116 ~~~~g~~~~p~~fIID~dG~I~~~~~~~~~~gr~~~Ellr~I~al 160 (249)
T 3a2v_A 116 HAESATHTVRGVFIVDARGVIRTMLYYPMELGRLVDEILRIVKAL 160 (249)
T ss_dssp CTTCSSSCCEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred cccCCCcccceEEEECCCCeEEEEEecCCcccchhHHHHHHHHHH
Confidence 89987777 899999988765 578888887764
|
| >2pn8_A Peroxiredoxin-4; thioredoxin, oxidoreductase, structural genomics consortium, SGC; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.92 E-value=1.5e-05 Score=76.26 Aligned_cols=85 Identities=12% Similarity=0.076 Sum_probs=67.2
Q ss_pred CCceEEEee-cCCCccccccchHHHHHHhhC--CCcEEEEEeccc----------------------------Ccchhhh
Q 005108 628 PGVSVVHFK-SASNLHCKQISPYVETLCGRY--PSINFLKVDIDE----------------------------SPGVAHA 676 (714)
Q Consensus 628 ~~~~vv~f~-a~~c~~C~~~~p~l~~l~~~~--~~~~~~~vd~d~----------------------------~~~l~~~ 676 (714)
.+++++.|| +.||++|....|.|.++..++ .++.++.|.+|. ..++++.
T Consensus 48 Gk~vvl~F~pat~C~~C~~e~~~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~~~~~ 127 (211)
T 2pn8_A 48 GKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSINTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLTHQISKD 127 (211)
T ss_dssp TSEEEEEECSCTTSSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSCEEECTTSHHHHH
T ss_pred CCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHhhhccCccCCceEEEECCchHHHHH
Confidence 458999999 999999999999999998887 458888777653 1235678
Q ss_pred CCcc------ccceEEEE-eCCeEEEEEcCC-----CHHHHHHHHhhh
Q 005108 677 ENVR------IVPTFKIY-KNGSRMKEIVCP-----SRDMLEHSVRHY 712 (714)
Q Consensus 677 ~~v~------~~Pt~~~~-~~G~~~~~~~g~-----~~~~l~~~~~~~ 712 (714)
|+|. .+|+++|+ ++|+++...+|. +.+++.+.|+.+
T Consensus 128 ygv~~~~~g~~~p~~~lID~~G~I~~~~~g~~~~~~~~~ell~~l~~l 175 (211)
T 2pn8_A 128 YGVYLEDSGHTLRGLFIIDDKGILRQITLNDLPVGRSVDETLRLVQAF 175 (211)
T ss_dssp TTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred cCCcccCCCcccceEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 8985 69988877 899999988764 567777777654
|
| >2i3y_A Epididymal secretory glutathione peroxidase; thioredoxin fold, epididymal androgen related protein, struc genomics, structural genomics consortium; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.91 E-value=3e-05 Score=74.17 Aligned_cols=84 Identities=6% Similarity=-0.088 Sum_probs=62.0
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhCC--CcEEEEEeccc-------C----cchhh------hCCcc--------
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRYP--SINFLKVDIDE-------S----PGVAH------AENVR-------- 680 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~--~~~~~~vd~d~-------~----~~l~~------~~~v~-------- 680 (714)
.++++|.||++||++|+ ..|.|+++..+|. ++.++-|.+++ . .+.++ .|++.
T Consensus 56 GKvvll~FwAt~C~~c~-e~p~L~~l~~~~~~~g~~Vlgvs~d~f~~~e~~~~~~i~~f~~~~~~~~~~~~~fpll~d~d 134 (215)
T 2i3y_A 56 GKHILFVNVATYCGLTA-QYPELNALQEELKPYGLVVLGFPCNQFGKQEPGDNKEILPGLKYVRPGGGFVPSFQLFEKGD 134 (215)
T ss_dssp TSEEEEEEECSSSGGGG-GHHHHHHHHHHHGGGTEEEEEEECCCSTTCCCSCHHHHHHHHHHTSSCTTCCCSSEEBCCCC
T ss_pred CCEEEEEEeCCCCCChH-hHHHHHHHHHHhccCCeEEEEEEccccCcCCCCCHHHHHHHHHhccchhccCccceeEeeec
Confidence 45899999999999999 8999999999885 48888887542 1 11122 33220
Q ss_pred --------------------------------------cc---ceEEEE-eCCeEEEEEcCC-CHHHHHHHHhhh
Q 005108 681 --------------------------------------IV---PTFKIY-KNGSRMKEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 681 --------------------------------------~~---Pt~~~~-~~G~~~~~~~g~-~~~~l~~~~~~~ 712 (714)
.+ |+.+++ ++|+++.++.|. +.++|+..|+++
T Consensus 135 ~~g~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~p~~~~~i~~npttfLID~~G~vv~~~~g~~~~~~l~~~I~~l 209 (215)
T 2i3y_A 135 VNGEKEQKVFSFLKHSCPHPSEILGTFKSISWDPVKVHDIRWNFEKFLVGPDGIPVMRWSHRATVSSVKTDILAY 209 (215)
T ss_dssp SSSTTCCHHHHHHHHHSCCSCSCCCCTTTCCSSSCCTTCCCSTTCEEEECTTSCEEEEECTTSCHHHHHHHHHHH
T ss_pred cCCcccchHHHHHHhhCcccccccccccccccccccccccccCceEEEECCCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 11 555555 999999999988 888999888764
|
| >3hd5_A Thiol:disulfide interchange protein DSBA; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.35A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.90 E-value=9.4e-06 Score=76.75 Aligned_cols=41 Identities=27% Similarity=0.444 Sum_probs=36.6
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhCCC-cEEEEEecc
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRYPS-INFLKVDID 668 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~-~~~~~vd~d 668 (714)
..++++.|++.||+.|+.+.|.+.++.+++++ +.|..++++
T Consensus 25 ~~~~vv~f~d~~Cp~C~~~~~~l~~l~~~~~~~v~~~~~~~~ 66 (195)
T 3hd5_A 25 GKIEVLEFFAYTCPHCAAIEPMVEDWAKTAPQDVVLKQVPIA 66 (195)
T ss_dssp TCEEEEEEECTTCHHHHHHHHHHHHHHHTCCTTEEEEEEECC
T ss_pred CCeEEEEEECCCCccHHHhhHHHHHHHHHCCCCeEEEEEecc
Confidence 45789999999999999999999999999985 888888875
|
| >1q98_A Thiol peroxidase, TPX; structural genomics, NYSGXRC, PSI, protein structure initiative; 1.90A {Haemophilus influenzae} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=97.89 E-value=2.6e-05 Score=71.43 Aligned_cols=73 Identities=10% Similarity=0.091 Sum_probs=58.3
Q ss_pred CCceEEEee-cCCCccccccchHHHHHHhhCCCcEEEEEeccc-----------------------CcchhhhCCccc--
Q 005108 628 PGVSVVHFK-SASNLHCKQISPYVETLCGRYPSINFLKVDIDE-----------------------SPGVAHAENVRI-- 681 (714)
Q Consensus 628 ~~~~vv~f~-a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~-----------------------~~~l~~~~~v~~-- 681 (714)
.+++++.|| +.||+.|....|.+.++..++.++.++.|.+|. ...+++.|+|..
T Consensus 43 gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv~~~~ 122 (165)
T 1q98_A 43 SKRKVLNIFPSIDTGVCATSVRKFNQQAAKLSNTIVLCISADLPFAQARFCGAEGIENAKTVSTFRNHALHSQLGVDIQT 122 (165)
T ss_dssp TSEEEEEECSCSCSSCCCHHHHHHHHHHHHSTTEEEEEEESSCHHHHTTCTTTTTCTTEEEEECTTCTHHHHHTTCEECS
T ss_pred CCeEEEEEECCCCCCccHHHHHHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHcCCCceEEeeccccchHHHHhCceecc
Confidence 457899999 799999999999999999888668887776553 234667788864
Q ss_pred -------cceEEEE-eCCeEEEEEcCC
Q 005108 682 -------VPTFKIY-KNGSRMKEIVCP 700 (714)
Q Consensus 682 -------~Pt~~~~-~~G~~~~~~~g~ 700 (714)
+|+++++ ++|+++....|.
T Consensus 123 ~~~~g~~~p~~~liD~~G~i~~~~~~~ 149 (165)
T 1q98_A 123 GPLAGLTSRAVIVLDEQNNVLHSQLVE 149 (165)
T ss_dssp STTTTSBCCEEEEECTTSBEEEEEECS
T ss_pred cccCCccceeEEEEcCCCEEEEEEeCC
Confidence 5988777 899999998763
|
| >3me7_A Putative uncharacterized protein; electron transfer protein, electron transport, structural GE PSI-2, protein structure initiative; 1.50A {Aquifex aeolicus} PDB: 3me8_A | Back alignment and structure |
|---|
Probab=97.88 E-value=1.7e-05 Score=73.05 Aligned_cols=85 Identities=7% Similarity=-0.071 Sum_probs=66.0
Q ss_pred CCceEEEeecCCCc-cccccchHHHHHHhhCC----CcEEEEEeccc-------------------------------Cc
Q 005108 628 PGVSVVHFKSASNL-HCKQISPYVETLCGRYP----SINFLKVDIDE-------------------------------SP 671 (714)
Q Consensus 628 ~~~~vv~f~a~~c~-~C~~~~p~l~~l~~~~~----~~~~~~vd~d~-------------------------------~~ 671 (714)
.+++++.||+.||+ .|....+.+.++..++. ++.++.|.+|. ..
T Consensus 28 Gk~vll~F~~t~C~~~C~~~~~~l~~~~~~~~~~~~~~~vv~is~d~~d~~~~~~~~~~~~~~~~~~w~~l~~~~~~~~~ 107 (170)
T 3me7_A 28 GKPIILSPIYTHCRAACPLITKSLLKVIPKLGTPGKDFWVITFTFDPKDTLEDIKRFQKEYGIDGKGWKVVKAKTSEDLF 107 (170)
T ss_dssp TSCEEEEEECTTCCSHHHHHHHHHHTTHHHHCCBTTTBEEEEEECCTTCCHHHHHHHHHHTTCCSSSEEEEEESSHHHHH
T ss_pred CCEEEEEEECCCCCchhHHHHHHHHHHHHHhhhcCCceEEEEEECCCCCCHHHHHHHHHHcCCCCCCeEEEeCCCHHHHH
Confidence 46899999999998 59999999999988873 48888777651 11
Q ss_pred chhhhCC---------ccccceEEEE-eCCeEEEEEcCC--CHHHHHHHHhhh
Q 005108 672 GVAHAEN---------VRIVPTFKIY-KNGSRMKEIVCP--SRDMLEHSVRHY 712 (714)
Q Consensus 672 ~l~~~~~---------v~~~Pt~~~~-~~G~~~~~~~g~--~~~~l~~~~~~~ 712 (714)
+++++|| +...|+++++ ++|+++..+.|. +.++|...|++.
T Consensus 108 ~~~~~~g~~~~~~~~~~~~~~~~~lID~~G~i~~~~~g~~~~~~~i~~~l~~~ 160 (170)
T 3me7_A 108 KLLDAIDFRFMTAGNDFIHPNVVVVLSPELQIKDYIYGVNYNYLEFVNALRLA 160 (170)
T ss_dssp HHHHHTTCCCEEETTEEECCCEEEEECTTSBEEEEEESSSCCHHHHHHHHHHH
T ss_pred HHHHHCCeEEecCCCccccCceEEEECCCCeEEEEEeCCCCCHHHHHHHHHHh
Confidence 3455555 4566776666 999999988887 889999988875
|
| >4gqc_A Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, fully folded, locally unfolded, peroxide, DTT, structural genomics, riken; 2.00A {Aeropyrum pernix} PDB: 2cx3_A 2cx4_A 4gqf_A | Back alignment and structure |
|---|
Probab=97.85 E-value=1.5e-05 Score=72.96 Aligned_cols=86 Identities=15% Similarity=0.106 Sum_probs=64.4
Q ss_pred CCCceEEEee-cCCCccccccchHHHHHHhhCC--CcEEEEEeccc---------------------CcchhhhCCcc--
Q 005108 627 LPGVSVVHFK-SASNLHCKQISPYVETLCGRYP--SINFLKVDIDE---------------------SPGVAHAENVR-- 680 (714)
Q Consensus 627 ~~~~~vv~f~-a~~c~~C~~~~p~l~~l~~~~~--~~~~~~vd~d~---------------------~~~l~~~~~v~-- 680 (714)
..+.+++.|| +.||++|....|.+.++..++. ++.++-|..|. ..+++++|||.
T Consensus 32 ~Gk~vvl~f~~~~~cp~C~~e~~~l~~~~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~fp~l~D~~~~v~~~ygv~~~ 111 (164)
T 4gqc_A 32 RGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEKANAEVLAISVDSPWCLKKFKDENRLAFNLLSDYNREVIKLYNVYHE 111 (164)
T ss_dssp TSSCEEEEECSCTTCCEECSSCEESCCCGGGGGGSSSEEEEEESSCHHHHHHHHHHTTCCSEEEECTTSHHHHHTTCEEE
T ss_pred CCCEEEEEEeCCCCCCCcccchhhhhhhHHHhhccCceEEEecCCCHHHHHHHHHhcCcccceeecCchHHHHHcCCccc
Confidence 3456777777 9999999999998888888774 58888887663 44578899985
Q ss_pred --------ccceEEEE-eCCeEEEEEcCC------CHHHHHHHHhhh
Q 005108 681 --------IVPTFKIY-KNGSRMKEIVCP------SRDMLEHSVRHY 712 (714)
Q Consensus 681 --------~~Pt~~~~-~~G~~~~~~~g~------~~~~l~~~~~~~ 712 (714)
..|+++++ ++|+++...++. +.+++.+.|+++
T Consensus 112 ~~~~~~~~~~p~tflID~~G~I~~~~~~~~~~~~~~~~eil~~l~~l 158 (164)
T 4gqc_A 112 DLKGLKMVAKRAVFIVKPDGTVAYKWVTDNPLNEPDYDEVVREANKI 158 (164)
T ss_dssp EETTEEEEECCEEEEECTTSBEEEEEECSCTTCCCCHHHHHHHHHHH
T ss_pred ccccCcCCeeeEEEEECCCCEEEEEEEeCCCCCCCCHHHHHHHHHHH
Confidence 36766555 999999876643 567777777665
|
| >1psq_A Probable thiol peroxidase; structural genomics, NYSGXRC, PSI, structure initiative, NEW YORK SGX research center for STRU genomics; 2.30A {Streptococcus pneumoniae} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=97.85 E-value=3e-05 Score=70.85 Aligned_cols=84 Identities=6% Similarity=-0.029 Sum_probs=65.5
Q ss_pred CCceEEEeec-CCCccccccchHHHHHHhhCCCcEEEEEeccc-----------------------CcchhhhCCcc---
Q 005108 628 PGVSVVHFKS-ASNLHCKQISPYVETLCGRYPSINFLKVDIDE-----------------------SPGVAHAENVR--- 680 (714)
Q Consensus 628 ~~~~vv~f~a-~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~-----------------------~~~l~~~~~v~--- 680 (714)
.+++++.||+ .||+.|....|.+.++..++.++.++.|.+|. ...+++.|+|.
T Consensus 42 gk~vvl~F~~~~~c~~C~~~~~~l~~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv~~~~ 121 (163)
T 1psq_A 42 GKKKVLSVVPSIDTGICSTQTRRFNEELAGLDNTVVLTVSMDLPFAQKRWCGAEGLDNAIMLSDYFDHSFGRDYALLINE 121 (163)
T ss_dssp TSEEEEEECSCTTSHHHHHHHHHHHHHTTTCTTEEEEEEESSCHHHHHHHHHHHTCTTSEEEECTTTCHHHHHHTCBCTT
T ss_pred CCEEEEEEECCCCCCccHHHHHHHHHHHHHcCCcEEEEEECCCHHHHHHHHHhcCCCCcEEecCCchhHHHHHhCCcccc
Confidence 4588999995 99999999999999999888668887776653 23466778887
Q ss_pred -c--cceEEEE-eCCeEEEEEcCC------CHHHHHHHHhh
Q 005108 681 -I--VPTFKIY-KNGSRMKEIVCP------SRDMLEHSVRH 711 (714)
Q Consensus 681 -~--~Pt~~~~-~~G~~~~~~~g~------~~~~l~~~~~~ 711 (714)
+ .|+++++ ++|+++....|. +.+++.+.|++
T Consensus 122 ~g~~~p~~~liD~~G~i~~~~~g~~~~~~~~~~~~l~~l~~ 162 (163)
T 1psq_A 122 WHLLARAVFVLDTDNTIRYVEYVDNINSEPNFEAAIAAAKA 162 (163)
T ss_dssp TCSBCCEEEEECTTCBEEEEEECSBTTSCCCHHHHHHHHHH
T ss_pred CCceEEEEEEEcCCCeEEEEEecCCcCCCCCHHHHHHHHHh
Confidence 3 3888777 899999998764 33677777765
|
| >1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin, decamer, antioxidant, peroxidase, AHPF, oxidoreductase; 2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB: 1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A | Back alignment and structure |
|---|
Probab=97.85 E-value=2.9e-05 Score=72.67 Aligned_cols=85 Identities=11% Similarity=-0.003 Sum_probs=66.7
Q ss_pred CCceEEEeec-CCCccccccchHHHHHHhhCC--CcEEEEEeccc-------------------------CcchhhhCCc
Q 005108 628 PGVSVVHFKS-ASNLHCKQISPYVETLCGRYP--SINFLKVDIDE-------------------------SPGVAHAENV 679 (714)
Q Consensus 628 ~~~~vv~f~a-~~c~~C~~~~p~l~~l~~~~~--~~~~~~vd~d~-------------------------~~~l~~~~~v 679 (714)
.+++++.||+ .||+.|....|.|.++..++. ++.++.|.+|. ...+++.|+|
T Consensus 30 Gk~vvl~F~~~~~Cp~C~~e~~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~ygv 109 (186)
T 1n8j_A 30 GRWSVFFFYPADFTFVSPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFDN 109 (186)
T ss_dssp TSEEEEEECSCTTCSHHHHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHHHCTTGGGCCSEEEECTTSHHHHHTTC
T ss_pred CCeEEEEEECCCCCCccHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHcCcccCCceeEEECCchHHHHHhCC
Confidence 3588999995 899999999999999988774 57887777653 2235678888
Q ss_pred c------ccceEEEE-eCCeEEEEEcCC-----CHHHHHHHHhhh
Q 005108 680 R------IVPTFKIY-KNGSRMKEIVCP-----SRDMLEHSVRHY 712 (714)
Q Consensus 680 ~------~~Pt~~~~-~~G~~~~~~~g~-----~~~~l~~~~~~~ 712 (714)
. .+|+++++ ++|+++....|. +.++|.+.|+.+
T Consensus 110 ~~~~~g~~~p~~~lID~~G~i~~~~~~~~~~~~~~~~l~~~l~~l 154 (186)
T 1n8j_A 110 MREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAA 154 (186)
T ss_dssp EETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred ccCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHH
Confidence 7 47988777 899999988764 477888877764
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.84 E-value=0.00041 Score=59.83 Aligned_cols=99 Identities=12% Similarity=-0.044 Sum_probs=80.4
Q ss_pred HHHHHHHHhhccCCCCHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHH
Q 005108 498 EACQAYGEGLRFDPSNSVLYCNRAACWFKLGQ---WERSVEDSNQALLIQPN-YTKALLRRAASNSKLEKWADAVRDFEV 573 (714)
Q Consensus 498 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~eA~~~~~~ 573 (714)
...+.|++-+. ......+.+++|+++.+..+ ..+++..++..++..|. .-+.+|.+|..++++|+|++|.++.+.
T Consensus 24 ~lr~qY~~E~~-~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~ 102 (144)
T 1y8m_A 24 ILRQQVVSEGG-PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDT 102 (144)
T ss_dssp HHHHHHHHTTS-TTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHhcc-CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 33444443322 34578999999999998775 55799999999998884 568899999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHhhh
Q 005108 574 LRRELPDDNEIAESLFHAQVSLKK 597 (714)
Q Consensus 574 al~~~p~~~~~~~~L~~~~~~l~~ 597 (714)
+++..|+|..+......+...+.+
T Consensus 103 lL~~eP~n~QA~~Lk~~Ie~~i~k 126 (144)
T 1y8m_A 103 LFEHERNNKQVGALKSMVEDKIQK 126 (144)
T ss_dssp HHHTCCCCHHHHHHHHHHHHHHHH
T ss_pred HHhcCCCcHHHHHHHHHHHHHHHH
Confidence 999999999998877777666544
|
| >2r37_A Glutathione peroxidase 3; plasma, structural genomics consort oxidoreductase, secreted, selenium, selenocysteine; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.82 E-value=3.6e-05 Score=73.20 Aligned_cols=40 Identities=5% Similarity=-0.128 Sum_probs=34.1
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhCC--CcEEEEEecc
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRYP--SINFLKVDID 668 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~--~~~~~~vd~d 668 (714)
.++++|.||++||++| ...|.|.++..+|. ++.++-|.++
T Consensus 38 GKvvll~F~At~C~~c-~e~p~L~~l~~~~~~~g~~vlgvs~d 79 (207)
T 2r37_A 38 GKYVLFVNVASYGGLT-GQYIELNALQEELAPFGLVILGFPCN 79 (207)
T ss_dssp TSEEEEEEECSSSTTT-THHHHHHHHHHHHGGGTEEEEEEECC
T ss_pred CCEEEEEEeCCCCCCh-HHHHHHHHHHHHhccCCEEEEEEECc
Confidence 4589999999999999 67899999999885 4888888754
|
| >3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa} | Back alignment and structure |
|---|
Probab=97.80 E-value=3.6e-05 Score=71.57 Aligned_cols=85 Identities=9% Similarity=-0.017 Sum_probs=64.5
Q ss_pred CCceEEEee-cCCCccccccchHHHHHHhhCC--CcEEEEEeccc---------------------CcchhhhCCccc--
Q 005108 628 PGVSVVHFK-SASNLHCKQISPYVETLCGRYP--SINFLKVDIDE---------------------SPGVAHAENVRI-- 681 (714)
Q Consensus 628 ~~~~vv~f~-a~~c~~C~~~~p~l~~l~~~~~--~~~~~~vd~d~---------------------~~~l~~~~~v~~-- 681 (714)
.+.+++.|| +.||+.|....|.|.++..++. ++.++.|.+|. ..++++.|+|..
T Consensus 51 Gk~vvl~f~~~~~c~~C~~el~~l~~l~~~~~~~~~~vv~Vs~D~~~~~~~~~~~~~~~f~~l~D~~~~~~~~~gv~~~~ 130 (179)
T 3ixr_A 51 NQWLVLYFYPKDNTPGSSTEGLEFNLLLPQFEQINATVLGVSRDSVKSHDSFCAKQGFTFPLVSDSDAILCKAFDVIKEK 130 (179)
T ss_dssp TSEEEEEECSCTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESCCHHHHHHHHHHHTCCSCEEECTTCHHHHHTTCEEEE
T ss_pred CCCEEEEEEcCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCceEEEECCchHHHHHcCCcccc
Confidence 347788888 9999999999999999998884 48888887664 445688899864
Q ss_pred ----------cceEEEE-eCCeEEEEEcCC----CHHHHHHHHhhh
Q 005108 682 ----------VPTFKIY-KNGSRMKEIVCP----SRDMLEHSVRHY 712 (714)
Q Consensus 682 ----------~Pt~~~~-~~G~~~~~~~g~----~~~~l~~~~~~~ 712 (714)
+|+++++ ++|+++..+.+. ..+++.+.|+.+
T Consensus 131 ~~~g~~~~~~~p~~~lID~~G~I~~~~~~~~~~~~~~~il~~l~~l 176 (179)
T 3ixr_A 131 TMYGRQVIGIERSTFLIGPTHRIVEAWRQVKVPGHAEEVLNKLKAH 176 (179)
T ss_dssp CCC--CEEEECCEEEEECTTSBEEEEECSCCSTTHHHHHHHHHHHH
T ss_pred cccCcccCCcceEEEEECCCCEEEEEEcCCCCCCCHHHHHHHHHHH
Confidence 5877777 899999888654 335555555543
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=97.80 E-value=0.00031 Score=59.80 Aligned_cols=99 Identities=12% Similarity=-0.059 Sum_probs=80.9
Q ss_pred HHHHHHHHhhccCCCCHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHH
Q 005108 498 EACQAYGEGLRFDPSNSVLYCNRAACWFKLGQ---WERSVEDSNQALLIQPN-YTKALLRRAASNSKLEKWADAVRDFEV 573 (714)
Q Consensus 498 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~eA~~~~~~ 573 (714)
...+.|++-+ ...-.+.+.+++|+++.+..+ ..+++..++..++.+|. .-+.++.+|..+.++|+|++|.++.+.
T Consensus 25 ~l~~qy~~E~-~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~ 103 (134)
T 3o48_A 25 ILRQQVVSEG-GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDT 103 (134)
T ss_dssp HHHHHHHHTT-GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHh-CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 3344444433 233367999999999998765 45799999999998884 468899999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHhhh
Q 005108 574 LRRELPDDNEIAESLFHAQVSLKK 597 (714)
Q Consensus 574 al~~~p~~~~~~~~L~~~~~~l~~ 597 (714)
+++..|+|..+......+...+.+
T Consensus 104 lL~~eP~N~QA~~Lk~~Ie~ki~k 127 (134)
T 3o48_A 104 LFEHERNNKQVGALKSMVEDKIQK 127 (134)
T ss_dssp HHTTCTTCHHHHHHHHHHHHHHHH
T ss_pred HHhhCCCCHHHHHHHHHHHHHHHh
Confidence 999999999999888777777664
|
| >2l4c_A Endoplasmic reticulum resident protein 27; ERP27, PDI, B domain, peptide binding; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.79 E-value=9e-05 Score=63.76 Aligned_cols=95 Identities=12% Similarity=0.145 Sum_probs=77.9
Q ss_pred eeeehhhhHHhhhccCCCceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCcchhhhCCccccceEEEEeCC
Q 005108 612 VEEVSSLEQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAHAENVRIVPTFKIYKNG 691 (714)
Q Consensus 612 ~~~i~~~e~~~~~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G 691 (714)
...+.+.+++...+....++||-|+..||.+| .+.+.+++..++++.|..++. .++++.|+|. .|++++|+.+
T Consensus 23 ~~~i~s~~e~e~fi~~~~v~VVGfF~~~~~~~---~~~F~~~A~~~~d~~F~~t~~---~~v~~~~~v~-~~~vvlfkkf 95 (124)
T 2l4c_A 23 PTWLTDVPAAMEFIAATEVAVIGFFQDLEIPA---VPILHSMVQKFPGVSFGISTD---SEVLTHYNIT-GNTICLFRLV 95 (124)
T ss_dssp CEECCSHHHHHHHHHTSSEEEEEECSCTTSTH---HHHHHHHHHHCTTSEEEEECC---HHHHHHTTCC-SSCEEEEETT
T ss_pred ceEcCCHHHHHHHHhcCCCEEEEEECCCCChh---HHHHHHHHHhCCCceEEEECh---HHHHHHcCCC-CCeEEEEEcC
Confidence 34466777888888888899999999999988 677888888888899988865 5689999998 8999999987
Q ss_pred e-EEEEEcC----C-CHHHHHHHHhhhc
Q 005108 692 S-RMKEIVC----P-SRDMLEHSVRHYS 713 (714)
Q Consensus 692 ~-~~~~~~g----~-~~~~l~~~~~~~~ 713 (714)
. ....+.| . +.+.|++||....
T Consensus 96 de~~~~~~g~~~~~~~~~~L~~FI~~n~ 123 (124)
T 2l4c_A 96 DNEQLNLEDEDIESIDATKLSRFIEINS 123 (124)
T ss_dssp TTEEEEECHHHHTTCCHHHHHHHHHHHC
T ss_pred CCCceeecCcccCCCCHHHHHHHHHHhc
Confidence 4 4455665 4 9999999998764
|
| >3zrd_A Thiol peroxidase; oxidoreductase, 2Cys peroxiredoxin, thioredoxin-fold, ROS PR; 1.74A {Yersinia pseudotuberculosis} PDB: 2xpe_A 2xpd_A 3zre_A 2yjh_A 4af2_A 3hvs_A* 1qxh_A* 3i43_A* 3hvv_A 3hvx_A | Back alignment and structure |
|---|
Probab=97.78 E-value=5.3e-05 Score=71.74 Aligned_cols=73 Identities=12% Similarity=0.086 Sum_probs=58.7
Q ss_pred CCceEEEee-cCCCccccccchHHHHHHhhCCCcEEEEEeccc-----------------------CcchhhhCCcc---
Q 005108 628 PGVSVVHFK-SASNLHCKQISPYVETLCGRYPSINFLKVDIDE-----------------------SPGVAHAENVR--- 680 (714)
Q Consensus 628 ~~~~vv~f~-a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~-----------------------~~~l~~~~~v~--- 680 (714)
.+++++.|| +.||+.|....|.+.++..++.++.++.|.+|. ...++++|+|.
T Consensus 78 Gk~vvl~F~~~~~c~~C~~e~~~l~~l~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~~ygv~~~~ 157 (200)
T 3zrd_A 78 GKRKVLNIFPSIDTGVCAASVRKFNQLAGELENTVVLCISSDLPFAQSRFCGAEGLSNVITLSTLRGADFKQAYGVAITE 157 (200)
T ss_dssp TSEEEEEECSCCCCSCCCHHHHHHHHHHHTSTTEEEEEEESSCHHHHTTCTTTTTCTTEEEEETTSCTHHHHHTTCEECS
T ss_pred CCcEEEEEECCCCCchhHHHHHHHHHHHHHhCCCEEEEEECCCHHHHHHHHHHcCCCCceEEecCchHHHHHHhCceeec
Confidence 457899999 689999999999999999998778888887663 23456778886
Q ss_pred ------ccceEEEE-eCCeEEEEEcCC
Q 005108 681 ------IVPTFKIY-KNGSRMKEIVCP 700 (714)
Q Consensus 681 ------~~Pt~~~~-~~G~~~~~~~g~ 700 (714)
.+|+++++ ++|+++...++.
T Consensus 158 ~~~~g~~~p~~~lID~~G~I~~~~~~~ 184 (200)
T 3zrd_A 158 GPLAGLTARAVVVLDGQDNVIYSELVN 184 (200)
T ss_dssp STTTTSBCCEEEEECTTSBEEEEEECS
T ss_pred ccCCCccccEEEEECCCCeEEEEEecC
Confidence 36988777 999999987654
|
| >3c1r_A Glutaredoxin-1; oxidized form, oxidoreductase, cytoplasm, electron transport, redox-active center, transport; HET: MES; 2.00A {Saccharomyces cerevisiae} PDB: 3c1s_A* 2jac_A* | Back alignment and structure |
|---|
Probab=97.78 E-value=3.1e-06 Score=72.63 Aligned_cols=70 Identities=16% Similarity=0.287 Sum_probs=51.9
Q ss_pred HHhhhccCCCceEEEeecCCCcccccc-chHHHHHHhhCCCcEEEEEecccCc-------chhhhCCccccceEEEEeCC
Q 005108 620 QFRAAVSLPGVSVVHFKSASNLHCKQI-SPYVETLCGRYPSINFLKVDIDESP-------GVAHAENVRIVPTFKIYKNG 691 (714)
Q Consensus 620 ~~~~~i~~~~~~vv~f~a~~c~~C~~~-~p~l~~l~~~~~~~~~~~vd~d~~~-------~l~~~~~v~~~Pt~~~~~~G 691 (714)
.++..+... .++.|+++||+.|+.+ .+.|+++.. +.+.|..+|++..+ ++.+.++++++|++ |.+|
T Consensus 17 ~~~~~i~~~--~Vvvf~~~~Cp~C~~alk~~L~~~~~--~~i~~~~vdid~~~~~~~~~~~l~~~~g~~tvP~v--fi~g 90 (118)
T 3c1r_A 17 HVKDLIAEN--EIFVASKTYCPYCHAALNTLFEKLKV--PRSKVLVLQLNDMKEGADIQAALYEINGQRTVPNI--YING 90 (118)
T ss_dssp HHHHHHHHS--SEEEEECSSCHHHHHHHHHHHTTSCC--CGGGEEEEEGGGSTTHHHHHHHHHHHHSCCSSCEE--EETT
T ss_pred HHHHHHccC--cEEEEEcCCCcCHHHHHHHHHHHcCC--CCCCeEEEECccCCChHHHHHHHHHHhCCCCcCEE--EECC
Confidence 444444333 3667999999999998 887765441 23788899998765 48888999999986 6699
Q ss_pred eEEE
Q 005108 692 SRMK 695 (714)
Q Consensus 692 ~~~~ 695 (714)
+.+.
T Consensus 91 ~~ig 94 (118)
T 3c1r_A 91 KHIG 94 (118)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8764
|
| >2yzh_A Probable thiol peroxidase; redox protein, antioxidant, oxidoreductase, STRU genomics, NPPSFA; 1.85A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.78 E-value=5.1e-05 Score=69.91 Aligned_cols=84 Identities=17% Similarity=0.169 Sum_probs=65.3
Q ss_pred CCceEEEee-cCCCccccccchHHHHHHhhCCCcEEEEEeccc-----------------------CcchhhhCCccc--
Q 005108 628 PGVSVVHFK-SASNLHCKQISPYVETLCGRYPSINFLKVDIDE-----------------------SPGVAHAENVRI-- 681 (714)
Q Consensus 628 ~~~~vv~f~-a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~-----------------------~~~l~~~~~v~~-- 681 (714)
.+++++.|| +.||+.|....|.+.++..++.++.++.|.+|. ...+ +.|+|..
T Consensus 47 gk~vvl~f~~~~~C~~C~~~~~~l~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~-~~~gv~~~~ 125 (171)
T 2yzh_A 47 DVVQVIITVPSLDTPVCETETKKFNEIMAGMEGVDVTVVSMDLPFAQKRFCESFNIQNVTVASDFRYRDM-EKYGVLIGE 125 (171)
T ss_dssp SSEEEEEECSCTTSHHHHHHHHHHHHHTTTCTTEEEEEEESSCHHHHHHHHHHTTCCSSEEEECTTTCGG-GGGTCBBCS
T ss_pred CCeEEEEEECCCCCCchHHHHHHHHHHHHHcCCceEEEEeCCCHHHHHHHHHHcCCCCeEEeecCccCcH-HHhCCEecc
Confidence 457899999 799999999999999999888668887776553 2345 7788762
Q ss_pred -------cceEEEE-eCCeEEEEEcCC------CHHHHHHHHhhh
Q 005108 682 -------VPTFKIY-KNGSRMKEIVCP------SRDMLEHSVRHY 712 (714)
Q Consensus 682 -------~Pt~~~~-~~G~~~~~~~g~------~~~~l~~~~~~~ 712 (714)
+|+++++ ++|+++....|. +.+++.+.|+++
T Consensus 126 ~~~~g~~~p~~~liD~~G~i~~~~~~~~~~~~~~~~~ll~~l~~l 170 (171)
T 2yzh_A 126 GALKGILARAVFIIDKEGKVAYVQLVPEITEEPNYDEVVNKVKEL 170 (171)
T ss_dssp STTTTSBCCEEEEECTTSBEEEEEECSBTTSCCCCHHHHHHHHHC
T ss_pred cccCCceeeEEEEEcCCCeEEEEEeCCCcCCCCCHHHHHHHHHhh
Confidence 6887777 899999988752 557788877764
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=97.77 E-value=0.0003 Score=60.96 Aligned_cols=113 Identities=11% Similarity=-0.054 Sum_probs=92.6
Q ss_pred ccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCH------HHHHHHHHHhhccCCCC--------HHHHHHHHHHHHHh
Q 005108 462 QIDPRNVEVAVLLNNVKLVARARARGNDLFKSERF------TEACQAYGEGLRFDPSN--------SVLYCNRAACWFKL 527 (714)
Q Consensus 462 ~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~------~~A~~~~~~al~~~p~~--------~~~~~~la~~~~~~ 527 (714)
-+.|++++.|..+ ...+.+.|+. ++-++.|++|+..-|.. ..+|...|.. ...
T Consensus 7 ~~~p~~yd~W~~y------------l~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei 73 (161)
T 4h7y_A 7 MMMANNPEDWLSL------------LLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAI 73 (161)
T ss_dssp ---CCSHHHHHHH------------HHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHH
T ss_pred eeCCCCHHHHHHH------------HHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHh
Confidence 3578999999877 4555555777 88889999999876543 4566666644 677
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHH
Q 005108 528 GQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAES 587 (714)
Q Consensus 528 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~ 587 (714)
++.++|.+.|+.++.+......+|...|..-.++|+...|.+.+.+++.+.|...+..+.
T Consensus 74 ~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~ 133 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEI 133 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHH
Confidence 999999999999999988899999999999999999999999999999999998876554
|
| >3p7x_A Probable thiol peroxidase; thioredoxin fold, oxidoreductase; HET: PG4; 1.96A {Staphylococcus aureus} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=97.73 E-value=4.1e-05 Score=70.18 Aligned_cols=83 Identities=8% Similarity=0.052 Sum_probs=65.0
Q ss_pred CCceEEEee-cCCCccccccchHHHHHHhhCCCcEEEEEeccc-----------------------CcchhhhCCccc--
Q 005108 628 PGVSVVHFK-SASNLHCKQISPYVETLCGRYPSINFLKVDIDE-----------------------SPGVAHAENVRI-- 681 (714)
Q Consensus 628 ~~~~vv~f~-a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~-----------------------~~~l~~~~~v~~-- 681 (714)
.+++++.|| +.||+.|....|.+.++..+ .++.++.|..|. ...++..|+|..
T Consensus 46 Gk~vvl~f~~~~~c~~C~~~~~~l~~~~~~-~~~~vv~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv~~~~ 124 (166)
T 3p7x_A 46 GKKKLISVVPSIDTGVCDQQTRKFNSDASK-EEGIVLTISADLPFAQKRWCASAGLDNVITLSDHRDLSFGENYGVVMEE 124 (166)
T ss_dssp TSCEEEEECSCTTSHHHHHHHHHHHHHSCT-TTSEEEEEESSCHHHHHHHHHHHTCSSCEEEECTTTCHHHHHHTCEETT
T ss_pred CCcEEEEEECCCCCCccHHHHHHHHHHhhc-CCCEEEEEECCCHHHHHHHHHHcCCCceEEccCCchhHHHHHhCCcccc
Confidence 457888998 78999999999999999887 778888777653 235677889985
Q ss_pred ----cceEEEE-eCCeEEEEEcCC------CHHHHHHHHhh
Q 005108 682 ----VPTFKIY-KNGSRMKEIVCP------SRDMLEHSVRH 711 (714)
Q Consensus 682 ----~Pt~~~~-~~G~~~~~~~g~------~~~~l~~~~~~ 711 (714)
+|+++++ ++|+++....+. +.+++.+.|++
T Consensus 125 ~g~~~p~~~liD~~G~i~~~~~~~~~~~~~~~~~il~~l~~ 165 (166)
T 3p7x_A 125 LRLLARAVFVLDADNKVVYKEIVSEGTDFPDFDAALAAYKN 165 (166)
T ss_dssp TTEECCEEEEECTTCBEEEEEECSBTTSCCCHHHHHHHHHT
T ss_pred CCceeeEEEEECCCCeEEEEEEcCCcccCCCHHHHHHHHhc
Confidence 8988777 899999885533 45777777765
|
| >2klx_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Bartonella henselae} | Back alignment and structure |
|---|
Probab=97.69 E-value=1.9e-05 Score=63.83 Aligned_cols=57 Identities=7% Similarity=0.210 Sum_probs=46.6
Q ss_pred eEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecc--cCcchhhhC-CccccceEEEEeCCeEE
Q 005108 631 SVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDID--ESPGVAHAE-NVRIVPTFKIYKNGSRM 694 (714)
Q Consensus 631 ~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d--~~~~l~~~~-~v~~~Pt~~~~~~G~~~ 694 (714)
.++.|+++||+.|+.+.+.|+++. +.|..+|++ ..+++.+.+ ++..+|+++ .+|+.+
T Consensus 7 ~v~~y~~~~C~~C~~~~~~L~~~~-----i~~~~vdv~~~~~~~l~~~~~~~~~vP~l~--~~g~~i 66 (89)
T 2klx_A 7 EIILYTRPNCPYCKRARDLLDKKG-----VKYTDIDASTSLRQEMVQRANGRNTFPQIF--IGDYHV 66 (89)
T ss_dssp CEEEESCSCCTTTHHHHHHHHHHT-----CCEEEECSCHHHHHHHHHHHHSSCCSCEEE--ETTEEC
T ss_pred eEEEEECCCChhHHHHHHHHHHcC-----CCcEEEECCHHHHHHHHHHhCCCCCcCEEE--ECCEEE
Confidence 467899999999999999998763 567888887 566788888 999999985 488754
|
| >2wfc_A Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidant enzymes; 1.75A {Arenicola marina} | Back alignment and structure |
|---|
Probab=97.68 E-value=6.5e-05 Score=68.82 Aligned_cols=72 Identities=11% Similarity=0.052 Sum_probs=55.3
Q ss_pred CceEEEee-cCCCccccc-cchHHHHHHhhC--CCc-EEEEEeccc-----------------------CcchhhhCCcc
Q 005108 629 GVSVVHFK-SASNLHCKQ-ISPYVETLCGRY--PSI-NFLKVDIDE-----------------------SPGVAHAENVR 680 (714)
Q Consensus 629 ~~~vv~f~-a~~c~~C~~-~~p~l~~l~~~~--~~~-~~~~vd~d~-----------------------~~~l~~~~~v~ 680 (714)
+.+++.|| +.||+.|.. ..|.+.++..++ .++ .++-|.+|. ..+++++|+|.
T Consensus 32 k~vvl~f~~a~wcp~C~~~e~p~l~~~~~~~~~~gv~~vv~Is~d~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~gv~ 111 (167)
T 2wfc_A 32 KKGVLFAVPGAFTPGSSKTHLPGYVEQAAAIHGKGVDIIACMAVNDSFVMDAWGKAHGADDKVQMLADPGGAFTKAVDME 111 (167)
T ss_dssp SEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHHTTCCEEEEEESSCHHHHHHHHHHTTCTTTSEEEECTTSHHHHHTTCE
T ss_pred CcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHhcCCCcceEEEECCCCcHHHHcCCc
Confidence 45677765 999999999 899999888777 368 888887653 23457788987
Q ss_pred cc-----------ceEEEEeCCeEEEEEcCC
Q 005108 681 IV-----------PTFKIYKNGSRMKEIVCP 700 (714)
Q Consensus 681 ~~-----------Pt~~~~~~G~~~~~~~g~ 700 (714)
.. |+.+|+++|+++...+++
T Consensus 112 ~~~~~~~g~~~~~p~t~lI~~G~I~~~~~~~ 142 (167)
T 2wfc_A 112 LDLSAVLGNVRSKRYSLVIEDGVVTKVNVEP 142 (167)
T ss_dssp ECCHHHHSSCEECCEEEEEETTEEEEEEECT
T ss_pred cccccccCcccceEEEEEEeCCEEEEEEecC
Confidence 54 865544999999988876
|
| >2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.68 E-value=3.2e-05 Score=64.71 Aligned_cols=68 Identities=21% Similarity=0.244 Sum_probs=50.2
Q ss_pred hHHhhhccCCCceEEEeec-----CCCccccccchHHHHHHhhCCCcEEEEEecccCcch----hhhCCccccceEEEEe
Q 005108 619 EQFRAAVSLPGVSVVHFKS-----ASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGV----AHAENVRIVPTFKIYK 689 (714)
Q Consensus 619 e~~~~~i~~~~~~vv~f~a-----~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~l----~~~~~v~~~Pt~~~~~ 689 (714)
+.+...+... .+ +.|+. +||+.|+++.+.|+++. +.|..+|+++++++ ...+++..+|++ |.
T Consensus 8 ~~~~~~i~~~-~v-vvf~~g~~~~~~C~~C~~~~~~L~~~~-----i~~~~vdi~~~~~~~~~l~~~~g~~~vP~v--~i 78 (105)
T 2yan_A 8 ERLKVLTNKA-SV-MLFMKGNKQEAKCGFSKQILEILNSTG-----VEYETFDILEDEEVRQGLKAYSNWPTYPQL--YV 78 (105)
T ss_dssp HHHHHHHTSS-SE-EEEESBCSSSBCTTHHHHHHHHHHHHT-----CCCEEEEGGGCHHHHHHHHHHHTCCSSCEE--EE
T ss_pred HHHHHHhccC-CE-EEEEecCCCCCCCccHHHHHHHHHHCC-----CCeEEEECCCCHHHHHHHHHHHCCCCCCeE--EE
Confidence 4455555544 33 34666 99999999999998863 66888999987764 455799999998 45
Q ss_pred CCeEEE
Q 005108 690 NGSRMK 695 (714)
Q Consensus 690 ~G~~~~ 695 (714)
||+.+.
T Consensus 79 ~g~~ig 84 (105)
T 2yan_A 79 KGELVG 84 (105)
T ss_dssp TTEEEE
T ss_pred CCEEEe
Confidence 898654
|
| >3nzn_A Glutaredoxin; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics, rossmann fold; 1.10A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=97.67 E-value=5.4e-05 Score=63.08 Aligned_cols=71 Identities=20% Similarity=0.241 Sum_probs=51.1
Q ss_pred ceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccC-----cchh----hhCCccccceEEEEeCC-eEEEEEcC
Q 005108 630 VSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDES-----PGVA----HAENVRIVPTFKIYKNG-SRMKEIVC 699 (714)
Q Consensus 630 ~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~-----~~l~----~~~~v~~~Pt~~~~~~G-~~~~~~~g 699 (714)
..++.|+++||+.|+++.+.|+++. +.|-.+|++.. +++. ...++.++|++++ +| + .+.|
T Consensus 22 ~~v~ly~~~~Cp~C~~ak~~L~~~~-----i~y~~vdI~~~~~~~~~~~~~~l~~~~g~~~vP~l~i--~~~~---~igg 91 (103)
T 3nzn_A 22 GKVIMYGLSTCVWCKKTKKLLTDLG-----VDFDYVYVDRLEGKEEEEAVEEVRRFNPSVSFPTTII--NDEK---AIVG 91 (103)
T ss_dssp SCEEEEECSSCHHHHHHHHHHHHHT-----BCEEEEEGGGCCHHHHHHHHHHHHHHCTTCCSCEEEE--TTTE---EEES
T ss_pred CeEEEEcCCCCchHHHHHHHHHHcC-----CCcEEEEeeccCcccHHHHHHHHHHhCCCCccCEEEE--CCCE---EEEc
Confidence 4577899999999999999998874 33455666542 2232 3469999999876 44 3 3457
Q ss_pred CCHHHHHHHHh
Q 005108 700 PSRDMLEHSVR 710 (714)
Q Consensus 700 ~~~~~l~~~~~ 710 (714)
++.++|++.|+
T Consensus 92 ~~~~~l~~~L~ 102 (103)
T 3nzn_A 92 FKEKEIRESLG 102 (103)
T ss_dssp CCHHHHHHHTT
T ss_pred CCHHHHHHHhC
Confidence 79999988763
|
| >3qpm_A Peroxiredoxin; oxidoreductase, thioredoxin fold, peroxidase; 1.90A {Larimichthys crocea} | Back alignment and structure |
|---|
Probab=97.66 E-value=7.7e-05 Score=72.77 Aligned_cols=85 Identities=12% Similarity=0.105 Sum_probs=67.6
Q ss_pred CCceEEEeec-CCCccccccchHHHHHHhhCC--CcEEEEEeccc----------------------------Ccchhhh
Q 005108 628 PGVSVVHFKS-ASNLHCKQISPYVETLCGRYP--SINFLKVDIDE----------------------------SPGVAHA 676 (714)
Q Consensus 628 ~~~~vv~f~a-~~c~~C~~~~p~l~~l~~~~~--~~~~~~vd~d~----------------------------~~~l~~~ 676 (714)
.+.+++.||+ .||+.|....|.|.++..++. ++.++.|.+|. ..++++.
T Consensus 77 Gk~vvL~F~~~~~cp~C~~el~~l~~l~~~~~~~gv~vv~Is~D~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~v~~~ 156 (240)
T 3qpm_A 77 GKYLVFFFYPLDFTFVCPTEIIAFSDRVHEFRAINTEVVACSVDSQFTHLAWIITPRKQGGLGPMKIPLLSDLTHQISKD 156 (240)
T ss_dssp TSEEEEEECSCTTSSHHHHHHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSCEEECTTSHHHHH
T ss_pred CCEEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHhhcCCCCCceeEEeCchHHHHHH
Confidence 4588999999 999999999999999999884 58888777663 2346788
Q ss_pred CCcc------ccceEEEE-eCCeEEEEEcCC-----CHHHHHHHHhhh
Q 005108 677 ENVR------IVPTFKIY-KNGSRMKEIVCP-----SRDMLEHSVRHY 712 (714)
Q Consensus 677 ~~v~------~~Pt~~~~-~~G~~~~~~~g~-----~~~~l~~~~~~~ 712 (714)
|+|. .+|+++++ ++|+++....+. +.+++.+.|+.+
T Consensus 157 ygv~~~~~g~~~p~~flID~~G~I~~~~~~~~~~~~~~~eil~~l~~l 204 (240)
T 3qpm_A 157 YGVYLEDQGHTLRGLFIIDEKGVLRQITMNDLPVGRSVDETLRLVQAF 204 (240)
T ss_dssp TTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred hCCccccCCCccceEEEEcCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 9998 78988777 899999887753 566777766653
|
| >3gv1_A Disulfide interchange protein; neisseria gonorrhoeae (strain 700825 / FA 1090), DSBC, structural genomics, unknown funct 2; 2.00A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=97.66 E-value=2e-05 Score=70.27 Aligned_cols=78 Identities=17% Similarity=0.220 Sum_probs=59.9
Q ss_pred CCCceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEec---------------------------------------
Q 005108 627 LPGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDI--------------------------------------- 667 (714)
Q Consensus 627 ~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~--------------------------------------- 667 (714)
+..++++.|...+|+.|+++.+.++++ +++.++.++.
T Consensus 13 ~a~~~vv~f~D~~Cp~C~~~~~~l~~l----~~v~v~~~~~P~~~~~~~s~~~a~a~~ca~d~~~a~~~~~~~g~~~~~~ 88 (147)
T 3gv1_A 13 NGKLKVAVFSDPDCPFCKRLEHEFEKM----TDVTVYSFMMPIAGLHPDAARKAQILWCQPDRAKAWTDWMRKGKFPVGG 88 (147)
T ss_dssp TCCEEEEEEECTTCHHHHHHHHHHTTC----CSEEEEEEECCCTTTCTTHHHHHHHHHTSSSHHHHHHHHHHHCCCCTTC
T ss_pred CCCEEEEEEECCCChhHHHHHHHHhhc----CceEEEEEEccccccChhHHHHHHHHHcCCCHHHHHHHHHhCCCCCCcc
Confidence 456889999999999999999987653 5555543321
Q ss_pred -------ccCcchhhhCCccccceEEEEeCCeEEEEEcCC-CHHHHHHHHhhh
Q 005108 668 -------DESPGVAHAENVRIVPTFKIYKNGSRMKEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 668 -------d~~~~l~~~~~v~~~Pt~~~~~~G~~~~~~~g~-~~~~l~~~~~~~ 712 (714)
+++.++++.+||+++|||++ .||+. +.|. +.++|++.|++.
T Consensus 89 ~~~~~~v~~~~~la~~~gI~gtPt~vi-~nG~~---i~G~~~~~~l~~~i~~~ 137 (147)
T 3gv1_A 89 SICDNPVAETTSLGEQFGFNGTPTLVF-PNGRT---QSGYSPMPQLEEIIRKN 137 (147)
T ss_dssp CCCSCSHHHHHHHHHHTTCCSSCEEEC-TTSCE---EESCCCTTHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhCCCccCEEEE-ECCEE---eeCCCCHHHHHHHHHHH
Confidence 11345678999999999998 78973 6788 999999999874
|
| >1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10 | Back alignment and structure |
|---|
Probab=97.65 E-value=8e-05 Score=72.93 Aligned_cols=73 Identities=16% Similarity=0.184 Sum_probs=57.9
Q ss_pred CCceEEEee-cCCCcccc-ccchHHHHHHhhC--CCc-EEEEEeccc----------------------CcchhhhCCcc
Q 005108 628 PGVSVVHFK-SASNLHCK-QISPYVETLCGRY--PSI-NFLKVDIDE----------------------SPGVAHAENVR 680 (714)
Q Consensus 628 ~~~~vv~f~-a~~c~~C~-~~~p~l~~l~~~~--~~~-~~~~vd~d~----------------------~~~l~~~~~v~ 680 (714)
.+.+++.|| +.||++|. ...|.+.++..++ .++ .++-|.+|. ..+++++|||.
T Consensus 33 gk~vvl~f~~a~~cp~C~~~e~~~l~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~ 112 (241)
T 1nm3_A 33 NKTVIVFSLPGAFTPTCSSSHLPRYNELAPVFKKYGVDDILVVSVNDTFVMNAWKEDEKSENISFIPDGNGEFTEGMGML 112 (241)
T ss_dssp TSEEEEEEESCSSCHHHHHTHHHHHHHHHHHHHHTTCCEEEEEESSCHHHHHHHHHHTTCTTSEEEECTTSHHHHHTTCE
T ss_pred CCeEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEcCCHHHHHHHHHhcCCCceEEEECCCcHHHHHhCce
Confidence 357889998 99999999 9999999998877 368 888887764 23467888886
Q ss_pred -----------ccceEEEEeCCeEEEEEcCC
Q 005108 681 -----------IVPTFKIYKNGSRMKEIVCP 700 (714)
Q Consensus 681 -----------~~Pt~~~~~~G~~~~~~~g~ 700 (714)
.+|+.+++++|+++...+|.
T Consensus 113 ~~~~~~g~~~~~~p~t~li~~G~i~~~~~~~ 143 (241)
T 1nm3_A 113 VGKEDLGFGKRSWRYSMLVKNGVVEKMFIEP 143 (241)
T ss_dssp EECTTTTCCEEECCEEEEEETTEEEEEEECC
T ss_pred eecccccCcccceeEEEEEECCEEEEEEEec
Confidence 45765444999999988886
|
| >3uma_A Hypothetical peroxiredoxin protein; nysgrc, PSI biology, structural genomics, NEW YORK structura genomics research consortium; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.63 E-value=5.8e-05 Score=70.26 Aligned_cols=82 Identities=10% Similarity=0.037 Sum_probs=61.3
Q ss_pred ceEEEeecCCCccccc-cchHHHHHHhhCC--CcE-EEEEeccc-----------------------CcchhhhCCccc-
Q 005108 630 VSVVHFKSASNLHCKQ-ISPYVETLCGRYP--SIN-FLKVDIDE-----------------------SPGVAHAENVRI- 681 (714)
Q Consensus 630 ~~vv~f~a~~c~~C~~-~~p~l~~l~~~~~--~~~-~~~vd~d~-----------------------~~~l~~~~~v~~- 681 (714)
++++.||+.||+.|.. ..|.+.++..++. ++. ++-|.+|. ..+++++|||..
T Consensus 59 vvL~f~~a~wcp~C~~~e~p~l~~~~~~~~~~gv~~vv~Is~d~~~~~~~f~~~~~~~~~fp~l~D~~~~va~~yGv~~~ 138 (184)
T 3uma_A 59 VVLFAVPGAFTPTCSLNHLPGYLENRDAILARGVDDIAVVAVNDLHVMGAWATHSGGMGKIHFLSDWNAAFTKAIGMEID 138 (184)
T ss_dssp EEEEEESCTTCHHHHHTHHHHHHHTHHHHHTTTCCEEEEEESSCHHHHHHHHHHHTCTTTSEEEECTTCHHHHHTTCEEE
T ss_pred EEEEEEcCCCCCCcCHHHHHHHHHHHHHHHHcCCCEEEEEECCCHHHHHHHHHHhCCCCceEEEEcCchHHHHHcCCcee
Confidence 5667788999999999 6999999988873 577 88887764 234678899863
Q ss_pred ----------cceEEEEeCCeEEEEEcCC-----CHHHHHHHHhh
Q 005108 682 ----------VPTFKIYKNGSRMKEIVCP-----SRDMLEHSVRH 711 (714)
Q Consensus 682 ----------~Pt~~~~~~G~~~~~~~g~-----~~~~l~~~~~~ 711 (714)
.|+.+|+++|+++...++. +...+++.|++
T Consensus 139 ~~~~g~g~~~~r~tfiIddG~I~~~~~~~~~g~~~~~~~~~vL~~ 183 (184)
T 3uma_A 139 LSAGTLGIRSKRYSMLVEDGVVKALNIEESPGQATASGAAAMLEL 183 (184)
T ss_dssp EGGGTCEEEECCEEEEEETTEEEEEEECSSTTCCSTTSHHHHHHH
T ss_pred ccccCCcccceeEEEEECCCEEEEEEEeCCCCCCcCCCHHHHHhh
Confidence 4656555999999988875 24556666654
|
| >2znm_A Thiol:disulfide interchange protein DSBA; thioredoxin fold, DSBA-like, oxidoreductase; 2.30A {Neisseria meningitidis serogroup B} PDB: 3dvx_A | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00015 Score=68.24 Aligned_cols=40 Identities=20% Similarity=0.353 Sum_probs=33.2
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhCCC-cEEEEEec
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRYPS-INFLKVDI 667 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~-~~~~~vd~ 667 (714)
..+.|+.|+..||+.|..+.|.+.++..++++ +.|..+.+
T Consensus 22 ~~~~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~~v~~~~~p~ 62 (195)
T 2znm_A 22 GKIEVLEFFGYFCVHCHHFDPLLLKLGKALPSDAYLRTEHV 62 (195)
T ss_dssp SSEEEEEEECTTSCCTTSSCHHHHHHHHHSCTTEEEEEEEC
T ss_pred CCcEEEEEECCCChhHHHHhHHHHHHHHHCCCceEEEEecc
Confidence 45789999999999999999999999998874 66655543
|
| >3tjj_A Peroxiredoxin-4; thioredoxin fold, sulfenylation, endoplasmic reticulum, oxidoreductase; HET: CSO; 1.91A {Homo sapiens} PDB: 3tjk_A 3tjb_A 3tjf_A 3tjg_A 3tkq_A 3tkp_A 3tks_A 3tkr_A 3tks_C | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00016 Score=70.98 Aligned_cols=85 Identities=12% Similarity=0.083 Sum_probs=66.0
Q ss_pred CCceEEEee-cCCCccccccchHHHHHHhhCC--CcEEEEEeccc----------------------------Ccchhhh
Q 005108 628 PGVSVVHFK-SASNLHCKQISPYVETLCGRYP--SINFLKVDIDE----------------------------SPGVAHA 676 (714)
Q Consensus 628 ~~~~vv~f~-a~~c~~C~~~~p~l~~l~~~~~--~~~~~~vd~d~----------------------------~~~l~~~ 676 (714)
.+.+++.|| +.||+.|....|.|.++..+|. ++.++-|.+|. ..++++.
T Consensus 91 GK~vvL~F~~a~~cp~C~~el~~l~~l~~~~~~~gv~vv~IS~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~va~~ 170 (254)
T 3tjj_A 91 GKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSINTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLTHQISKD 170 (254)
T ss_dssp TSEEEEEECSCTTCSSCCHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHTSCGGGTSCCSCSSCEEECTTSHHHHH
T ss_pred CCeEEEEEECCCCCCchHHHHHHHHHHHHHHHHcCCEEEEEcCCCHHHHHHHHHHHHHhcCCcccccceeeCcHHHHHHH
Confidence 457889999 8999999999999999998884 58888777663 2345778
Q ss_pred CCcc------ccceEEEE-eCCeEEEEEcCC-----CHHHHHHHHhhh
Q 005108 677 ENVR------IVPTFKIY-KNGSRMKEIVCP-----SRDMLEHSVRHY 712 (714)
Q Consensus 677 ~~v~------~~Pt~~~~-~~G~~~~~~~g~-----~~~~l~~~~~~~ 712 (714)
|+|. .+|+++|+ ++|+++....+. +.+++...|+.+
T Consensus 171 ygv~~~~~g~~~p~tflID~~G~I~~~~~~~~~~~~~~~eil~~L~al 218 (254)
T 3tjj_A 171 YGVYLEDSGHTLRGLFIIDDKGILRQITLNDLPVGRSVDETLRLVQAF 218 (254)
T ss_dssp HTCEETTTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHH
T ss_pred cCCccccCCCccceEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHhh
Confidence 8886 58987777 899999887753 567777766653
|
| >1fov_A Glutaredoxin 3, GRX3; active site disulfide, CIS Pro 53, electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 3grx_A* | Back alignment and structure |
|---|
Probab=97.55 E-value=7.2e-05 Score=59.19 Aligned_cols=68 Identities=13% Similarity=0.190 Sum_probs=49.6
Q ss_pred EEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCcc----hhhhCCccccceEEEEeCCeEEEEEcCCCHHHHHH
Q 005108 632 VVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPG----VAHAENVRIVPTFKIYKNGSRMKEIVCPSRDMLEH 707 (714)
Q Consensus 632 vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~----l~~~~~v~~~Pt~~~~~~G~~~~~~~g~~~~~l~~ 707 (714)
++.|+.+||+.|+.+.+.+++. ++.|..+|+++.+. +.+.+++..+|+++ .+|+.+. |. +.|.+
T Consensus 3 i~~y~~~~C~~C~~~~~~l~~~-----~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~l~--~~g~~i~---g~--~~i~~ 70 (82)
T 1fov_A 3 VEIYTKETCPYCHRAKALLSSK-----GVSFQELPIDGNAAKREEMIKRSGRTTVPQIF--IDAQHIG---GY--DDLYA 70 (82)
T ss_dssp EEEEECSSCHHHHHHHHHHHHH-----TCCCEEEECTTCSHHHHHHHHHHSSCCSCEEE--ETTEEEE---SH--HHHHH
T ss_pred EEEEECCCChhHHHHHHHHHHC-----CCCcEEEECCCCHHHHHHHHHHhCCCCcCEEE--ECCEEEe---CH--HHHHH
Confidence 5678999999999999998875 35677788877544 45678999999984 4887653 32 44555
Q ss_pred HHhh
Q 005108 708 SVRH 711 (714)
Q Consensus 708 ~~~~ 711 (714)
.++.
T Consensus 71 ~~~~ 74 (82)
T 1fov_A 71 LDAR 74 (82)
T ss_dssp HHHT
T ss_pred HHHC
Confidence 5543
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00039 Score=61.77 Aligned_cols=106 Identities=14% Similarity=0.078 Sum_probs=80.2
Q ss_pred HHHhHHhhCcCHHHHHHHHHHhhccCCCC---------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC------C----
Q 005108 485 ARGNDLFKSERFTEACQAYGEGLRFDPSN---------SVLYCNRAACWFKLGQWERSVEDSNQALLIQ------P---- 545 (714)
Q Consensus 485 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~---------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------p---- 545 (714)
+....++..+.|+.|+-....++.+..++ ..++..+|.+++..++|.+|...|++++++. +
T Consensus 25 dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~ 104 (167)
T 3ffl_A 25 DHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRP 104 (167)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccc
Confidence 44777899999999999999877664333 3588899999999999999999999997631 1
Q ss_pred ---------------CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005108 546 ---------------NYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAESLFHA 591 (714)
Q Consensus 546 ---------------~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~L~~~ 591 (714)
.+.++.+.++.||.+++++++|+..++..-. .-..+.+...|++.
T Consensus 105 ~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~-k~Rt~kvnm~LakL 164 (167)
T 3ffl_A 105 STGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS-RQRTPKINMLLANL 164 (167)
T ss_dssp ------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG-GGCCHHHHHHHHHH
T ss_pred cccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc-hhcCHHHHHHHHHH
Confidence 1237889999999999999999998765311 11345555555543
|
| >3hz8_A Thiol:disulfide interchange protein DSBA; thiol-oxidoreductase, disulfide bond; 1.45A {Neisseria meningitidis MC58} PDB: 3dvw_A 3a3t_A | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00013 Score=68.62 Aligned_cols=40 Identities=15% Similarity=0.304 Sum_probs=34.7
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhCCC-cEEEEEec
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRYPS-INFLKVDI 667 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~-~~~~~vd~ 667 (714)
..++|+.|+..||++|+.+.|.+.++.+++++ +.|..+++
T Consensus 24 ~~v~vv~f~d~~Cp~C~~~~~~l~~~~~~~~~~v~~~~~p~ 64 (193)
T 3hz8_A 24 GKVEVLEFFGYFCPHCAHLEPVLSKHAKSFKDDMYLRTEHV 64 (193)
T ss_dssp TSEEEEEEECTTCHHHHHHHHHHHHHHTTCCTTEEEEEEEC
T ss_pred CCcEEEEEECCCChhHHHHHHHHHHHHHHCCCCeEEEEecC
Confidence 35789999999999999999999999999985 77766665
|
| >3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=97.50 E-value=7.8e-05 Score=61.46 Aligned_cols=60 Identities=12% Similarity=0.226 Sum_probs=47.2
Q ss_pred CceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCcchhhhC-----CccccceEEEEeCCeEEE
Q 005108 629 GVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAHAE-----NVRIVPTFKIYKNGSRMK 695 (714)
Q Consensus 629 ~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~l~~~~-----~v~~~Pt~~~~~~G~~~~ 695 (714)
...|+.|+.+||+.|+++.+.|+++. +.|..+|++..++..+.+ ++..+|++ |.+|+.+.
T Consensus 15 ~~~v~vy~~~~Cp~C~~ak~~L~~~~-----i~y~~idI~~~~~~~~~l~~~~~g~~~vP~i--fi~g~~ig 79 (99)
T 3qmx_A 15 SAKIEIYTWSTCPFCMRALALLKRKG-----VEFQEYCIDGDNEAREAMAARANGKRSLPQI--FIDDQHIG 79 (99)
T ss_dssp CCCEEEEECTTCHHHHHHHHHHHHHT-----CCCEEEECTTCHHHHHHHHHHTTTCCCSCEE--EETTEEEE
T ss_pred CCCEEEEEcCCChhHHHHHHHHHHCC-----CCCEEEEcCCCHHHHHHHHHHhCCCCCCCEE--EECCEEEe
Confidence 35678899999999999999998864 557788888877654444 89999987 56887654
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00092 Score=59.36 Aligned_cols=95 Identities=14% Similarity=0.032 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC------C
Q 005108 243 EELKRMGNELYRKGCFGEALSMYDKAISLAPRN---------AAFRSNRAAALTGLGRIGEAVKECEEAVRLD------P 307 (714)
Q Consensus 243 ~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~---------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------p 307 (714)
..++.....++..|.|+.|+-..+.++....++ ..++..+|.+++..++|..|...|++++++. +
T Consensus 21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~ 100 (167)
T 3ffl_A 21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTS 100 (167)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCC
Confidence 346778889999999999999999987664332 3588999999999999999999999987542 1
Q ss_pred -------------------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhc
Q 005108 308 -------------------NYWRAHQRLGSLLVRLGQVENARRHLCLSG 337 (714)
Q Consensus 308 -------------------~~~~a~~~la~~~~~~g~~~~A~~~~~~al 337 (714)
.+.+..+.++.||..++++++|+..++.+-
T Consensus 101 s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 101 KVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp ----------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred CccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 123788999999999999999999997763
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00076 Score=58.45 Aligned_cols=101 Identities=14% Similarity=0.154 Sum_probs=87.7
Q ss_pred CCCCcHHHHHHHHHHHHHcCCH------HHHHHHHHHHHHhCCCC--------HHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 005108 237 ICGGDAEELKRMGNELYRKGCF------GEALSMYDKAISLAPRN--------AAFRSNRAAALTGLGRIGEAVKECEEA 302 (714)
Q Consensus 237 ~~p~~~~~~~~~g~~~~~~g~~------~~Al~~~~~al~~~p~~--------~~~~~~la~~~~~~g~~~~A~~~~~~a 302 (714)
+.|+|++.|......+-+.|+. ++-++.|++|+..-|.. ...|...|.. ...++.++|.+.|+.+
T Consensus 8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a 86 (161)
T 4h7y_A 8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMA 86 (161)
T ss_dssp --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHH
Confidence 6899999999999999999999 89999999999987642 4556666644 5669999999999999
Q ss_pred HhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC
Q 005108 303 VRLDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQ 338 (714)
Q Consensus 303 l~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~ 338 (714)
+.+....+..|...|..-.++|+...|.+.+.+++.
T Consensus 87 ~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG 122 (161)
T 4h7y_A 87 RANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVE 122 (161)
T ss_dssp HHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc
Confidence 999888999999999999999999999999999876
|
| >1tp9_A Peroxiredoxin, PRX D (type II); oligomer, thioredoxin fold, oxidoreductase; 1.62A {Populus trichocarpa} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00021 Score=65.06 Aligned_cols=73 Identities=11% Similarity=0.064 Sum_probs=57.3
Q ss_pred CCceEEEee-cCCCcccc-ccchHHHHHHhhC--CCcE-EEEEeccc-----------------------CcchhhhCCc
Q 005108 628 PGVSVVHFK-SASNLHCK-QISPYVETLCGRY--PSIN-FLKVDIDE-----------------------SPGVAHAENV 679 (714)
Q Consensus 628 ~~~~vv~f~-a~~c~~C~-~~~p~l~~l~~~~--~~~~-~~~vd~d~-----------------------~~~l~~~~~v 679 (714)
.+.+++.|| +.||+.|. ...|.+.++..++ .++. ++-|.+|. ..+++++|||
T Consensus 35 gk~vvl~f~~~~~c~~C~~~e~~~l~~~~~~~~~~~v~~vv~Is~d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv 114 (162)
T 1tp9_A 35 GKKVILFGVPGAFTPTCSLKHVPGFIEKAGELKSKGVTEILCISVNDPFVMKAWAKSYPENKHVKFLADGSATYTHALGL 114 (162)
T ss_dssp TSEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHHTTCCCEEEEESSCHHHHHHHHHTCTTCSSEEEEECTTSHHHHHTTC
T ss_pred CCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHhcCCCCCeEEEECCCchHHHHcCc
Confidence 457899999 89999999 8999999988777 3577 77776553 2346778888
Q ss_pred c-----------ccceEEEEeCCeEEEEEcCC
Q 005108 680 R-----------IVPTFKIYKNGSRMKEIVCP 700 (714)
Q Consensus 680 ~-----------~~Pt~~~~~~G~~~~~~~g~ 700 (714)
. .+|+++++.+|+++...+|.
T Consensus 115 ~~~~~~~g~~~~~~p~~~vid~G~i~~~~~~~ 146 (162)
T 1tp9_A 115 ELDLQEKGLGTRSRRFALLVDDLKVKAANIEG 146 (162)
T ss_dssp EEEETTTTSEEEECCEEEEEETTEEEEEEECS
T ss_pred ccccccCCCCccceeEEEEEECCEEEEEEeeC
Confidence 7 37987666799999988876
|
| >3mng_A Peroxiredoxin-5, mitochondrial; peroxidase, PRXV, substrate analog, DTT, oxidoreductase; 1.45A {Homo sapiens} SCOP: c.47.1.10 PDB: 2vl3_A 1oc3_A 2vl2_A 2vl9_A 1urm_A 1hd2_A 1h4o_A | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00017 Score=66.37 Aligned_cols=82 Identities=7% Similarity=0.104 Sum_probs=59.7
Q ss_pred ceEEEeecCCCcccc-ccchHHHHHHhhCC--CcEEEE-Eeccc-----------------------CcchhhhCCcc--
Q 005108 630 VSVVHFKSASNLHCK-QISPYVETLCGRYP--SINFLK-VDIDE-----------------------SPGVAHAENVR-- 680 (714)
Q Consensus 630 ~~vv~f~a~~c~~C~-~~~p~l~~l~~~~~--~~~~~~-vd~d~-----------------------~~~l~~~~~v~-- 680 (714)
++++.||+.||+.|. ...|.+.++..++. ++.++. |..|. ..+++++|||.
T Consensus 46 vvL~f~pa~wcp~C~~~e~p~l~~~~~~~~~~gv~vv~~iS~D~~~~~~~f~~~~~~~~~fp~l~D~~~~va~~yGv~~~ 125 (173)
T 3mng_A 46 GVLFGVPGAFTPGCSKTHLPGFVEQAEALKAKGVQVVACLSVNDAFVTGEWGRAHKAEGKVRLLADPTGAFGKETDLLLD 125 (173)
T ss_dssp EEEEECSCTTCHHHHHTHHHHHHHTHHHHHTTTCCEEEEEESSCHHHHHHHHHHTTCTTTCEEEECTTCHHHHHHTCBCC
T ss_pred EEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHHHHHhCCCCceEEEECCChHHHHHhCCCcc
Confidence 556667799999999 58899999888773 477765 65553 33567888886
Q ss_pred -----------ccceEEEEeCCeEEEEEcCC-----CHHHHHHHHhh
Q 005108 681 -----------IVPTFKIYKNGSRMKEIVCP-----SRDMLEHSVRH 711 (714)
Q Consensus 681 -----------~~Pt~~~~~~G~~~~~~~g~-----~~~~l~~~~~~ 711 (714)
..|+.+|+.+|+++...+++ +..+.++.|++
T Consensus 126 ~~~~~~~g~~~~~r~tfvIDdG~I~~~~v~~~~~g~~~~~~~~vl~~ 172 (173)
T 3mng_A 126 DSLVSIFGNRRLKRFSMVVQDGIVKALNVEPDGTGLTCSLAPNIISQ 172 (173)
T ss_dssp STTHHHHSSCCBCCEEEEEETTEEEEEEECTTSSCSSTTSHHHHHHH
T ss_pred cccccccCCcceEEEEEEEECCEEEEEEEeCCCCCcchHHHHHHHHh
Confidence 45876666699999988875 45666666654
|
| >4dvc_A Thiol:disulfide interchange protein DSBA; pilus assembly, oxidoreductase, thioredoxin fold, D disulfide bond, DSBB; HET: DMS; 1.20A {Vibrio cholerae} PDB: 2ijy_A 1bed_A | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00019 Score=66.84 Aligned_cols=82 Identities=20% Similarity=0.184 Sum_probs=63.3
Q ss_pred CceEEEeecCCCccccccchHHHHHHhhCCC-cEEEEEeccc--------------------------------------
Q 005108 629 GVSVVHFKSASNLHCKQISPYVETLCGRYPS-INFLKVDIDE-------------------------------------- 669 (714)
Q Consensus 629 ~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~-~~~~~vd~d~-------------------------------------- 669 (714)
.++|+.|..-.||.|+.+.|.+.++..++++ +.+..+.+.-
T Consensus 22 ~~~vvEf~dy~Cp~C~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (184)
T 4dvc_A 22 SPVVSEFFSFYCPHCNTFEPIIAQLKQQLPEGAKFQKNHVSFMGGNMGQAMSKAYATMIALEVEDKMVPVMFNRIHTLRK 101 (184)
T ss_dssp SCEEEEEECTTCHHHHHHHHHHHHHHHTSCTTCEEEEEECSSSSGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTSCC
T ss_pred CCEEEEEECCCCHhHHHHhHHHHHHHhhcCCceEEEEEecCCCCCchHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHhh
Confidence 4788999999999999999999999999975 6665543220
Q ss_pred -------------------------------------CcchhhhCCccccceEEEEeCCeEEEEEcCC-CHHHHHHHHhh
Q 005108 670 -------------------------------------SPGVAHAENVRIVPTFKIYKNGSRMKEIVCP-SRDMLEHSVRH 711 (714)
Q Consensus 670 -------------------------------------~~~l~~~~~v~~~Pt~~~~~~G~~~~~~~g~-~~~~l~~~~~~ 711 (714)
...+++.+||.++|||+| ||+.+-...+. +.+++.+.|+.
T Consensus 102 ~~~~~~~l~~~a~~~Gld~~~~~~~~~s~~~~~~v~~~~~~a~~~gv~gTPtfiI--NGky~v~~~~~~s~e~~~~~i~~ 179 (184)
T 4dvc_A 102 PPKDEQELRQIFLDEGIDAAKFDAAYNGFAVDSMVHRFDKQFQDSGLTGVPAVVV--NNRYLVQGQSAKSLDEYFDLVNY 179 (184)
T ss_dssp CCSSHHHHHHHHHTTTCCHHHHHHHHTSHHHHHHHHHHHHHHHHHTCCSSSEEEE--TTTEEECGGGCSSHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHhCCCHHHHHHHHhCHHHHHHHHHHHHHHHHcCCCcCCEEEE--CCEEeeCCcCCCCHHHHHHHHHH
Confidence 222366889999999877 99866555566 88999888876
Q ss_pred h
Q 005108 712 Y 712 (714)
Q Consensus 712 ~ 712 (714)
+
T Consensus 180 L 180 (184)
T 4dvc_A 180 L 180 (184)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >2khp_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Brucella melitensis} | Back alignment and structure |
|---|
Probab=97.36 E-value=0.0001 Score=59.90 Aligned_cols=58 Identities=10% Similarity=0.286 Sum_probs=45.0
Q ss_pred eEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCcc----hhhhCCccccceEEEEeCCeEEE
Q 005108 631 SVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPG----VAHAENVRIVPTFKIYKNGSRMK 695 (714)
Q Consensus 631 ~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~----l~~~~~v~~~Pt~~~~~~G~~~~ 695 (714)
.++.|+.+||+.|+.+.+.|++. ++.|..+|+++.+. +.+.+++..+|++ +.+|+.+.
T Consensus 7 ~v~ly~~~~C~~C~~~~~~L~~~-----~i~~~~~di~~~~~~~~~l~~~~~~~~vP~l--~~~g~~i~ 68 (92)
T 2khp_A 7 DVIIYTRPGCPYCARAKALLARK-----GAEFNEIDASATPELRAEMQERSGRNTFPQI--FIGSVHVG 68 (92)
T ss_dssp CEEEEECTTCHHHHHHHHHHHHT-----TCCCEEEESTTSHHHHHHHHHHHTSSCCCEE--EETTEEEE
T ss_pred cEEEEECCCChhHHHHHHHHHHc-----CCCcEEEECCCCHHHHHHHHHHhCCCCcCEE--EECCEEEc
Confidence 46789999999999999988764 46678888887654 4447899999975 45887544
|
| >3feu_A Putative lipoprotein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.76A {Vibrio fischeri} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00012 Score=68.28 Aligned_cols=82 Identities=17% Similarity=0.235 Sum_probs=62.8
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEeccc--------------------------------------
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDE-------------------------------------- 669 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~-------------------------------------- 669 (714)
..++||.|+..||++|+.+.|.+.++.+++ ++.|.++.+.-
T Consensus 22 ~~~~vvef~d~~Cp~C~~~~~~~~~~~~~~-~v~~~~~p~~~~~~~~~aa~a~~Aa~~q~g~~~~~~~~~~lf~a~~~~~ 100 (185)
T 3feu_A 22 GMAPVTEVFALSCGHCRNMENFLPVISQEA-GTDIGKMHITFNQSAHIASMFYYAAEMQVDGAPDHAFMEDLFAATQMGE 100 (185)
T ss_dssp CCCSEEEEECTTCHHHHHHGGGHHHHHHHH-TSCCEEEECCSSSHHHHHHHHHHHHHTTSSSSCCHHHHHHHHHHHTCCT
T ss_pred CCCEEEEEECCCChhHHHhhHHHHHHHHHh-CCeEEEEeccCCccchHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhc
Confidence 458899999999999999999999999887 66665554320
Q ss_pred ----------------------------------------CcchhhhCCccccceEEEEeCCeEEEEEcCC-CHHHHHHH
Q 005108 670 ----------------------------------------SPGVAHAENVRIVPTFKIYKNGSRMKEIVCP-SRDMLEHS 708 (714)
Q Consensus 670 ----------------------------------------~~~l~~~~~v~~~Pt~~~~~~G~~~~~~~g~-~~~~l~~~ 708 (714)
...+++++||.++|||+| ||+.+-...|. +.+.+.+.
T Consensus 101 ~~~~~~~~~~L~~~a~~~Gl~d~~~~~~~~~~~~~~~v~~~~~~a~~~gv~GtPtfvv--ng~~~v~~~Ga~~~e~~~~~ 178 (185)
T 3feu_A 101 GTTLTEQQEAYSKAFTSRGLVSPYDFNEEQRDTLIKKVDNAKMLSEKSGISSVPTFVV--NGKYNVLIGGHDDPKQIADT 178 (185)
T ss_dssp TSCHHHHHHHHHHHHHTTTCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCCSSSEEEE--TTTEEECGGGCSSHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCEEEE--CCEEEEecCCCCCHHHHHHH
Confidence 000134568899999987 89876555788 99999988
Q ss_pred Hhhh
Q 005108 709 VRHY 712 (714)
Q Consensus 709 ~~~~ 712 (714)
|+.+
T Consensus 179 i~~l 182 (185)
T 3feu_A 179 IRYL 182 (185)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
|
| >3rhb_A ATGRXC5, glutaredoxin-C5, chloroplastic; thioredoxin fold, thiol-disulfide oxidoreductase, glutaredox oxidoreductase; HET: GSH; 1.20A {Arabidopsis thaliana} PDB: 3rhc_A* 3fz9_A* 3fza_A* | Back alignment and structure |
|---|
Probab=97.34 E-value=8.5e-05 Score=63.06 Aligned_cols=68 Identities=21% Similarity=0.367 Sum_probs=47.9
Q ss_pred hHHhhhccCCCceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccC----cc----hhhhCCccccceEEEEeC
Q 005108 619 EQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDES----PG----VAHAENVRIVPTFKIYKN 690 (714)
Q Consensus 619 e~~~~~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~----~~----l~~~~~v~~~Pt~~~~~~ 690 (714)
+.++..+.... ++.|+.+||+.|+++.+.|+++. +.|-.+|++.. ++ +...+++..+|++ |.+
T Consensus 10 ~~~~~~i~~~~--v~vy~~~~Cp~C~~~~~~L~~~~-----i~~~~~di~~~~~~~~~~~~~l~~~~g~~tvP~i--fi~ 80 (113)
T 3rhb_A 10 ESIRKTVTENT--VVIYSKTWCSYCTEVKTLFKRLG-----VQPLVVELDQLGPQGPQLQKVLERLTGQHTVPNV--FVC 80 (113)
T ss_dssp HHHHHHHHHSS--EEEEECTTCHHHHHHHHHHHHTT-----CCCEEEEGGGSTTHHHHHHHHHHHHHSCCSSCEE--EET
T ss_pred HHHHHHHhcCC--EEEEECCCChhHHHHHHHHHHcC-----CCCeEEEeecCCCChHHHHHHHHHHhCCCCcCEE--EEC
Confidence 44455554433 67799999999999999998753 34556666652 22 4555699999998 569
Q ss_pred CeEEE
Q 005108 691 GSRMK 695 (714)
Q Consensus 691 G~~~~ 695 (714)
|+.+.
T Consensus 81 g~~ig 85 (113)
T 3rhb_A 81 GKHIG 85 (113)
T ss_dssp TEEEE
T ss_pred CEEEc
Confidence 98765
|
| >1z6m_A Conserved hypothetical protein; structural genomics, MCSG,, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.30A {Enterococcus faecalis} SCOP: c.47.1.13 | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00023 Score=65.68 Aligned_cols=79 Identities=16% Similarity=0.195 Sum_probs=60.0
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhC--C-CcEEEEEeccc-----------------------------------
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRY--P-SINFLKVDIDE----------------------------------- 669 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~--~-~~~~~~vd~d~----------------------------------- 669 (714)
..+.|+.|+..+|+.|+.+.+.+.++..+| + ++.++.+++.-
T Consensus 27 a~v~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lf~~~~ 106 (175)
T 1z6m_A 27 APVKMIEFINVRCPYCRKWFEESEELLAQSVKSGKVERIIKLFDKEKESLQRGNVMHHYIDYSAPEQALSALHKMFATQD 106 (175)
T ss_dssp CSEEEEEEECTTCHHHHHHHHHHHHHHHHHHHTTSEEEEEEECCCCSTTTHHHHHHHTTCCTTCHHHHHHHHHHHHHTHH
T ss_pred CCeEEEEEECCCCcchHHHHHHHHHHHHHHhhCCcEEEEEEeCCCCcccHHHHHHHHHHHHhcChHHHHHHHHHHHHcCh
Confidence 346899999999999999999999988887 4 47776655420
Q ss_pred -------------------------------CcchhhhCCccccceEEEEeCCeEEEEEcCC-CHHHHHHHHhh
Q 005108 670 -------------------------------SPGVAHAENVRIVPTFKIYKNGSRMKEIVCP-SRDMLEHSVRH 711 (714)
Q Consensus 670 -------------------------------~~~l~~~~~v~~~Pt~~~~~~G~~~~~~~g~-~~~~l~~~~~~ 711 (714)
..++++.+||.++|||+| ||+. +.|. +.+.|++.|++
T Consensus 107 ~~~~~~~~~l~~~a~~~~Gld~~~~~~~~~~~~~~a~~~gv~gtPt~vv--ng~~---~~G~~~~~~l~~~i~~ 175 (175)
T 1z6m_A 107 EWGNLTLEEVATYAEKNLGLKEQKDATLVSAVIAEANAAHIQFVPTIII--GEYI---FDESVTEEELRGYIEK 175 (175)
T ss_dssp HHTTSCHHHHHHHHHHTSCCCCCCCHHHHHHHHHHHHHHTCCSSCEEEE--TTEE---ECTTCCHHHHHHHHTC
T ss_pred hhccCCHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHcCCCCcCeEEE--CCEE---ccCCCCHHHHHHHhcC
Confidence 011245779999999765 8984 4687 99999988763
|
| >2pwj_A Mitochondrial peroxiredoxin; alpha and beta protein, oxidoreductase; 2.80A {Pisum sativum} | Back alignment and structure |
|---|
Probab=97.29 E-value=0.0002 Score=65.78 Aligned_cols=71 Identities=11% Similarity=0.136 Sum_probs=54.1
Q ss_pred CceEEEeecCCCcccccc-chHHHHHHhhC--CCcE-EEEEeccc-----------------------CcchhhhCCccc
Q 005108 629 GVSVVHFKSASNLHCKQI-SPYVETLCGRY--PSIN-FLKVDIDE-----------------------SPGVAHAENVRI 681 (714)
Q Consensus 629 ~~~vv~f~a~~c~~C~~~-~p~l~~l~~~~--~~~~-~~~vd~d~-----------------------~~~l~~~~~v~~ 681 (714)
.++++.||+.||++|... .|.+.++..++ .++. ++-|+++. ..+++++|||..
T Consensus 45 ~vvl~~~~a~wcp~C~~eh~p~l~~~~~~~~~~g~~~vv~Is~d~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~ygv~~ 124 (171)
T 2pwj_A 45 KVVIFGLPGAYTGVCSSKHVPPYKHNIDKFKAKGVDSVICVAINDPYTVNAWAEKIQAKDAIEFYGDFDGSFHKSLELTT 124 (171)
T ss_dssp EEEEEECSCTTCTTHHHHTHHHHHHTHHHHHHTTCSEEEEEESSCHHHHHHHHHHTTCTTTSEEEECTTCHHHHHHTCEE
T ss_pred CEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHHhCCCCceEEEECCccHHHHHhCCcc
Confidence 467889999999999998 89999888777 3577 88887653 233567778763
Q ss_pred -----------cc-eEEEEeCCeEEEEEcCC
Q 005108 682 -----------VP-TFKIYKNGSRMKEIVCP 700 (714)
Q Consensus 682 -----------~P-t~~~~~~G~~~~~~~g~ 700 (714)
.| +++|. +|+++...+|.
T Consensus 125 ~~~~~~~g~~~~~~t~~I~-~G~I~~~~~~~ 154 (171)
T 2pwj_A 125 DLSAGLLGIRSERWSAYVV-DGKVKALNVEE 154 (171)
T ss_dssp ECTTTTCCEEECCEEEEEE-TTEEEEEEECS
T ss_pred ccccccCCcccceeEEEEE-CCEEEEEEeec
Confidence 34 55665 99999988886
|
| >1xcc_A 1-Cys peroxiredoxin; unknown function, structural genomics, structural genomics consortium, SGC; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 PDB: 3tb2_A | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00027 Score=67.83 Aligned_cols=83 Identities=4% Similarity=0.047 Sum_probs=64.0
Q ss_pred ceEEEeecCCCccccccchHHHHHHhhCC--CcEEEEEeccc----------------------------CcchhhhCCc
Q 005108 630 VSVVHFKSASNLHCKQISPYVETLCGRYP--SINFLKVDIDE----------------------------SPGVAHAENV 679 (714)
Q Consensus 630 ~~vv~f~a~~c~~C~~~~p~l~~l~~~~~--~~~~~~vd~d~----------------------------~~~l~~~~~v 679 (714)
++++.||+.||+.|....+.|.++..++. ++.++.|.+|. ..++++.|+|
T Consensus 34 vvL~f~~a~~cp~C~~el~~l~~l~~~f~~~~v~vi~vS~D~~~~~~~~~~~i~~~~~~~~~~fpil~D~~~~va~~ygv 113 (220)
T 1xcc_A 34 AILFSHPNDFTPVCTTELAELGKMHEDFLKLNCKLIGFSCNSKESHDKWIEDIKYYGKLNKWEIPIVCDESRELANKLKI 113 (220)
T ss_dssp EEEECCSCTTCHHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHHTCSCCCCCEEECTTSHHHHHHTC
T ss_pred EEEEEECCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHHHHHHHhcCCCCcceeEECchhHHHHHhCC
Confidence 56666799999999999999999988774 57888777653 2335778888
Q ss_pred c------------ccceEEEE-eCCeEEEEEcC-----CCHHHHHHHHhhh
Q 005108 680 R------------IVPTFKIY-KNGSRMKEIVC-----PSRDMLEHSVRHY 712 (714)
Q Consensus 680 ~------------~~Pt~~~~-~~G~~~~~~~g-----~~~~~l~~~~~~~ 712 (714)
. .+|+++|+ ++|+++..+.+ .+.++|...|+.+
T Consensus 114 ~~~~~~~~~g~~~~~p~~flID~~G~I~~~~~~~~~~g~~~~ell~~i~~l 164 (220)
T 1xcc_A 114 MDEQEKDITGLPLTCRCLFFISPEKKIKATVLYPATTGRNAHEILRVLKSL 164 (220)
T ss_dssp EEEEEECTTSCEEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred CCcccccCCCCCcccceEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHH
Confidence 4 47887777 89999998864 3778888887764
|
| >4hde_A SCO1/SENC family lipoprotein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; HET: MSE; 1.32A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00099 Score=61.06 Aligned_cols=85 Identities=16% Similarity=0.223 Sum_probs=60.0
Q ss_pred CCceEEEeecCCCc-cccccchHHHHHHhhC----CCcEEEEEeccc---Ccch----hhh-------------------
Q 005108 628 PGVSVVHFKSASNL-HCKQISPYVETLCGRY----PSINFLKVDIDE---SPGV----AHA------------------- 676 (714)
Q Consensus 628 ~~~~vv~f~a~~c~-~C~~~~p~l~~l~~~~----~~~~~~~vd~d~---~~~l----~~~------------------- 676 (714)
++++++.||.+||+ .|....+.+.++...+ .++.++.|.+|- .++. ++.
T Consensus 32 Gk~vll~F~~t~Cp~~Cp~~~~~l~~l~~~~~~~~~~v~~v~isvDp~~Dtp~~l~~y~~~~~~~~~~~~~ltg~~~~~~ 111 (170)
T 4hde_A 32 GKVWVADFMFTNCQTVCPPMTANMAKLQKMAKEEKLDVQFVSFSVDPDLDKPENLKAFIQKFTEDTSNWNLLTGYSLEDI 111 (170)
T ss_dssp TSCEEEEEECTTCSSSHHHHHHHHHHHHHHHHHTTCCCEEEEEESCTTTCCHHHHHHHHTTTCSCCTTEEEEBCSCHHHH
T ss_pred CCEEEEEEECCCCCCcccHHHHHHHHHHHhhhcccccceeEeeecCcccccHHHHHHHHHHcCCCCCCceecCcccHHHH
Confidence 56899999999997 7998888888877665 358888887652 1111 111
Q ss_pred -----------------CCccccceEEEE-eCCeEEEEEcCC---CHHHHHHHHhhh
Q 005108 677 -----------------ENVRIVPTFKIY-KNGSRMKEIVCP---SRDMLEHSVRHY 712 (714)
Q Consensus 677 -----------------~~v~~~Pt~~~~-~~G~~~~~~~g~---~~~~l~~~~~~~ 712 (714)
+.|.+.|+++++ ++|+.+..+.|. ..++|.+.|+++
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~H~~~~~liD~~G~i~~~~~g~~~~~~~~l~~~ik~L 168 (170)
T 4hde_A 112 TKFSKDNFQSLVDKPENGQVIHGTSFYLIDQNGKVMKKYSGISNTPYEDIIRDMKRL 168 (170)
T ss_dssp HHHHHHHHCCCCBCCTTSCCBCCCEEEEECTTSCEEEEEESSSSCCHHHHHHHHHHH
T ss_pred HHHHHhcccccccCCCCceEEeeeEEEEEcCCCeEEEEECCCCCCCHHHHHHHHHHH
Confidence 233445666666 999999988875 567788777765
|
| >2rem_A Disulfide oxidoreductase; disulfide oxidoreductase, DSBA, thioredoxin fold, redox- active center; 1.90A {Xylella fastidiosa} | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00044 Score=64.93 Aligned_cols=39 Identities=18% Similarity=0.301 Sum_probs=32.7
Q ss_pred CceEEEeecCCCccccccchHHHHHHhhCCC-cEEEEEec
Q 005108 629 GVSVVHFKSASNLHCKQISPYVETLCGRYPS-INFLKVDI 667 (714)
Q Consensus 629 ~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~-~~~~~vd~ 667 (714)
.+.++.|+..+|+.|..+.|.+.++..++++ +.|..+.+
T Consensus 26 ~v~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~~v~~~~~p~ 65 (193)
T 2rem_A 26 KIEVVEIFGYTCPHCAHFDSKLQAWGARQAKDVRFTLVPA 65 (193)
T ss_dssp CEEEEEEECTTCHHHHHHHHHHHHHHHTSCTTEEEEEEEC
T ss_pred CeEEEEEECCCChhHhhhhHHHHHHHHhcCCceEEEEeCc
Confidence 4678999999999999999999999998874 66655544
|
| >3h8q_A Thioredoxin reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC, developmental protein, differentiation; 2.21A {Homo sapiens} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00016 Score=61.46 Aligned_cols=69 Identities=14% Similarity=0.241 Sum_probs=48.1
Q ss_pred hhHHhhhccCCCceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccC-------cchhhhCCccccceEEEEeC
Q 005108 618 LEQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDES-------PGVAHAENVRIVPTFKIYKN 690 (714)
Q Consensus 618 ~e~~~~~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~-------~~l~~~~~v~~~Pt~~~~~~ 690 (714)
.+.++..+.... ++.|+.+||+.|..+.+.|+++. +.|-.+|++.. +.+.+..|...+|++++ +
T Consensus 7 ~~~~~~~i~~~~--v~vy~~~~Cp~C~~ak~~L~~~~-----i~~~~~dvd~~~~~~~~~~~l~~~~g~~tvP~vfi--~ 77 (114)
T 3h8q_A 7 RRHLVGLIERSR--VVIFSKSYCPHSTRVKELFSSLG-----VECNVLELDQVDDGARVQEVLSEITNQKTVPNIFV--N 77 (114)
T ss_dssp HHHHHHHHHHCS--EEEEECTTCHHHHHHHHHHHHTT-----CCCEEEETTTSTTHHHHHHHHHHHHSCCSSCEEEE--T
T ss_pred HHHHHHHhccCC--EEEEEcCCCCcHHHHHHHHHHcC-----CCcEEEEecCCCChHHHHHHHHHHhCCCccCEEEE--C
Confidence 345555554433 45599999999999999988753 44566676642 23556778999999865 8
Q ss_pred CeEEE
Q 005108 691 GSRMK 695 (714)
Q Consensus 691 G~~~~ 695 (714)
|+.+.
T Consensus 78 g~~ig 82 (114)
T 3h8q_A 78 KVHVG 82 (114)
T ss_dssp TEEEE
T ss_pred CEEEe
Confidence 87654
|
| >1prx_A HORF6; peroxiredoxin, hydrogen peroxide, redox regulation, cellular signaling, antioxidant; 2.00A {Homo sapiens} SCOP: c.47.1.10 | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00061 Score=65.59 Aligned_cols=83 Identities=11% Similarity=0.126 Sum_probs=64.2
Q ss_pred ceEEEeecCCCccccccchHHHHHHhhCC--CcEEEEEeccc-------------------------------Ccchhhh
Q 005108 630 VSVVHFKSASNLHCKQISPYVETLCGRYP--SINFLKVDIDE-------------------------------SPGVAHA 676 (714)
Q Consensus 630 ~~vv~f~a~~c~~C~~~~p~l~~l~~~~~--~~~~~~vd~d~-------------------------------~~~l~~~ 676 (714)
++++.||+.||+.|....+.+.++..++. ++.++.|.+|. ..++++.
T Consensus 34 vvL~~~~a~~cp~C~~el~~l~~l~~~f~~~~v~vi~IS~D~~~~~~~~~~~i~~~~~~~~~~~~~fpil~D~~~~va~~ 113 (224)
T 1prx_A 34 GILFSHPRDFTPVCTTELGRAAKLAPEFAKRNVKLIALSIDSVEDHLAWSKDINAYNSEEPTEKLPFPIIDDRNRELAIL 113 (224)
T ss_dssp EEEEEESCSSCHHHHHHHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTSCCCSCCSSCEEECTTCHHHHH
T ss_pred EEEEEECCCCCCCcHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHHhhCcccccCcCcceeecCchHHHHH
Confidence 56777799999999999999999998874 57777776653 2235678
Q ss_pred CCcc------------ccceEEEE-eCCeEEEEEcCC-----CHHHHHHHHhhh
Q 005108 677 ENVR------------IVPTFKIY-KNGSRMKEIVCP-----SRDMLEHSVRHY 712 (714)
Q Consensus 677 ~~v~------------~~Pt~~~~-~~G~~~~~~~g~-----~~~~l~~~~~~~ 712 (714)
|+|. .+|+++|+ ++|+++..+.++ +.++|...|+.+
T Consensus 114 ygv~~~~~~~~~g~~~~~p~~fiID~~G~I~~~~~~~~~~gr~~~eil~~i~~l 167 (224)
T 1prx_A 114 LGMLDPAEKDEKGMPVTARVVFVFGPDKKLKLSILYPATTGRNFDEILRVVISL 167 (224)
T ss_dssp TTSSCSCTTCSSSCCTTCCEEEEECTTSBEEEEEECCTTBCCCHHHHHHHHHHH
T ss_pred hCCCCcccccCCCccccceEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHH
Confidence 8884 47887777 899999988753 678888877754
|
| >3l9v_A Putative thiol-disulfide isomerase or thioredoxin; thioredoxin-fold, SRGA, thiol-disulfide oxidoreductase, ISOM oxidoreductase; HET: PE8 P4C P6G; 2.15A {Salmonella enterica subsp} SCOP: c.47.1.0 | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00021 Score=66.96 Aligned_cols=40 Identities=20% Similarity=0.259 Sum_probs=33.9
Q ss_pred CceEEEeecCCCccccccchHH---HHHHhhCC-CcEEEEEecc
Q 005108 629 GVSVVHFKSASNLHCKQISPYV---ETLCGRYP-SINFLKVDID 668 (714)
Q Consensus 629 ~~~vv~f~a~~c~~C~~~~p~l---~~l~~~~~-~~~~~~vd~d 668 (714)
.++++.|++.||++|+.+.|.+ ..+.++++ ++.|+++++.
T Consensus 15 ~~~vvef~d~~Cp~C~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 58 (189)
T 3l9v_A 15 APAVVEFFSFYCPPCYAFSQTMGVDQAIRHVLPQGSRMVKYHVS 58 (189)
T ss_dssp CCSEEEEECTTCHHHHHHHHTSCHHHHHHTTCCTTCCEEEEECS
T ss_pred CCEEEEEECCCChhHHHHhHhccchHHHHHhCCCCCEEEEEech
Confidence 4789999999999999999986 68888887 4888877754
|
| >3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=97.21 E-value=0.022 Score=50.07 Aligned_cols=177 Identities=14% Similarity=0.061 Sum_probs=110.9
Q ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cC--------
Q 005108 237 ICGGDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVR--LD-------- 306 (714)
Q Consensus 237 ~~p~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~-------- 306 (714)
+.|..++....++..++-.|+|..|+-++.+ -+.....+..+.||..+.+|.+|+..++..+. .+
T Consensus 28 L~~~~~eY~lL~~I~LyyngEY~R~Lf~L~~-----lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~ 102 (242)
T 3kae_A 28 LLPCKPEYRMLMSIVLYLNGEYTRALFHLHK-----LNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDAR 102 (242)
T ss_dssp HC----CTHHHHHHHHHHTTCHHHHHHHHHT-----CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHH
T ss_pred HccCChHHHhhhhhhhhhcchHhHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccc
Confidence 5667778888899999999999999988764 35678888999999999999999999999983 22
Q ss_pred -------CCcH-HHHHHHHHHHHHcCCHHHHHHHHHhhcC-CCChHHHHHHHHH---------HHHHHHhHHHHHcCCHH
Q 005108 307 -------PNYW-RAHQRLGSLLVRLGQVENARRHLCLSGQ-QADPTEVHRLQVV---------EKHLSKCTDARKVGDWK 368 (714)
Q Consensus 307 -------p~~~-~a~~~la~~~~~~g~~~~A~~~~~~al~-~~~~~~~~~l~~~---------~~~~~~a~~~~~~g~~~ 368 (714)
|.+. -.+..+|.++.+.|+.++|+.+|..... ..-......+..- +.....+..-.+...+.
T Consensus 103 ~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~vEnliyeN~vp~~~d~~~i~~~~~~~i~~~y~~ 182 (242)
T 3kae_A 103 IQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPVENLLLENKVPQKRDKENVRQTGRRGIEEEYVS 182 (242)
T ss_dssp HHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHTTCCCCCC-----------CHHHHHHH
T ss_pred cceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchHHHHHhhcCCCcccchHHHHhhhhccchhhhhh
Confidence 3333 3567889999999999999999976532 1100000000000 00000000000000011
Q ss_pred HHH--------HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCC
Q 005108 369 SAL--------REGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPS 418 (714)
Q Consensus 369 ~Al--------~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 418 (714)
... ...++-...-|..-..+....+..|+.+|..++...+|..+-..+|.
T Consensus 183 d~~~lHe~~s~~~ikkY~n~iPGiGSY~va~aa~~yf~lg~~d~s~~lf~~lR~kDP~ 240 (242)
T 3kae_A 183 DSIEFHESLSPSLVKKYMEHVPGIGSYFISNAARRYFNLGMNDKSKACFELVRRKDPM 240 (242)
T ss_dssp HHHHHHHHCCHHHHHHHHTSTTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred hHHHHHHhccHHHHHHHHHhCCCchhHHHHHHHHHHHhcccchhHHHHHHHHHhcCCC
Confidence 111 12222223345433444556788899999999999999998888875
|
| >3msz_A Glutaredoxin 1; alpha-beta sandwich, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: GSH; 2.05A {Francisella tularensis subsp} PDB: 3lgc_A* | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00023 Score=57.26 Aligned_cols=61 Identities=11% Similarity=0.077 Sum_probs=45.2
Q ss_pred ceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccC----cchhhhCCc-----cccceEEEEeCCeEEE
Q 005108 630 VSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDES----PGVAHAENV-----RIVPTFKIYKNGSRMK 695 (714)
Q Consensus 630 ~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~----~~l~~~~~v-----~~~Pt~~~~~~G~~~~ 695 (714)
..++.|+.+||+.|+++...|+++.. .+.++.||+++. +++.+.++. ..+|++++ +|+.+.
T Consensus 4 m~v~ly~~~~Cp~C~~~~~~L~~~~i---~~~~~~vd~~~~~~~~~el~~~~g~~~~~~~~vP~i~i--~g~~i~ 73 (89)
T 3msz_A 4 MKVKIYTRNGCPYCVWAKQWFEENNI---AFDETIIDDYAQRSKFYDEMNQSGKVIFPISTVPQIFI--DDEHIG 73 (89)
T ss_dssp CCEEEEECTTCHHHHHHHHHHHHTTC---CCEEEECCSHHHHHHHHHHHHTTTCCSSCCCSSCEEEE--TTEEEE
T ss_pred eEEEEEEcCCChhHHHHHHHHHHcCC---CceEEEeecCCChhHHHHHHHHhCCCCCCCCccCEEEE--CCEEEe
Confidence 34778999999999999988876542 345666666554 457777787 99999865 887654
|
| >3ctg_A Glutaredoxin-2; reduced form, electron transport, mitochondrion, redox-activ transit peptide, transport, oxidoreductase; 1.50A {Saccharomyces cerevisiae} PDB: 3ctf_A 3d4m_A 3d5j_A* | Back alignment and structure |
|---|
Probab=97.10 E-value=9.6e-05 Score=64.25 Aligned_cols=73 Identities=18% Similarity=0.276 Sum_probs=50.8
Q ss_pred hhhHHhhhccCCCceEEEeecCCCcccccc-chHHHHHHhhCCCcEEEEEecccC-------cchhhhCCccccceEEEE
Q 005108 617 SLEQFRAAVSLPGVSVVHFKSASNLHCKQI-SPYVETLCGRYPSINFLKVDIDES-------PGVAHAENVRIVPTFKIY 688 (714)
Q Consensus 617 ~~e~~~~~i~~~~~~vv~f~a~~c~~C~~~-~p~l~~l~~~~~~~~~~~vd~d~~-------~~l~~~~~v~~~Pt~~~~ 688 (714)
..+.++..+... .|+.|+.+||+.|+++ .+.|+++... .+.|..+|++.. .++.+.+|+..+|++ |
T Consensus 26 ~~~~v~~~i~~~--~Vvvy~~~~Cp~C~~a~k~~L~~~~~~--~i~~~~vdvd~~~~~~~~~~~L~~~~g~~tVP~v--f 99 (129)
T 3ctg_A 26 TVAHVKDLIGQK--EVFVAAKTYCPYCKATLSTLFQELNVP--KSKALVLELDEMSNGSEIQDALEEISGQKTVPNV--Y 99 (129)
T ss_dssp HHHHHHHHHHHS--SEEEEECTTCHHHHHHHHHHHTTSCCC--GGGEEEEEGGGSTTHHHHHHHHHHHHSCCSSCEE--E
T ss_pred HHHHHHHHHcCC--CEEEEECCCCCchHHHHHHHHHhcCcc--CCCcEEEEccccCCHHHHHHHHHHHhCCCCCCEE--E
Confidence 334555555433 3678899999999999 8887665421 255666776654 357788899999995 6
Q ss_pred eCCeEEE
Q 005108 689 KNGSRMK 695 (714)
Q Consensus 689 ~~G~~~~ 695 (714)
.+|+.+.
T Consensus 100 i~g~~ig 106 (129)
T 3ctg_A 100 INGKHIG 106 (129)
T ss_dssp ETTEEEE
T ss_pred ECCEEEc
Confidence 6888654
|
| >2v2g_A Peroxiredoxin 6; oxidoreductase, antioxidant enzymes; 1.60A {Arenicola marina} PDB: 2v32_A 2v41_A | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00072 Score=65.32 Aligned_cols=83 Identities=11% Similarity=0.075 Sum_probs=63.8
Q ss_pred ceEEEee-cCCCccccccchHHHHHHhhCC--CcEEEEEeccc-----------------------------CcchhhhC
Q 005108 630 VSVVHFK-SASNLHCKQISPYVETLCGRYP--SINFLKVDIDE-----------------------------SPGVAHAE 677 (714)
Q Consensus 630 ~~vv~f~-a~~c~~C~~~~p~l~~l~~~~~--~~~~~~vd~d~-----------------------------~~~l~~~~ 677 (714)
.+++.|| +.||+.|....+.|.++..++. ++.++.|.+|. ..++++.|
T Consensus 31 ~vvL~f~pa~~cpvC~~el~~l~~l~~ef~~~~v~vigIS~D~~~~~~~~~~~i~~~~~~~~~~~fpil~D~~~~va~~y 110 (233)
T 2v2g_A 31 WGVLFSHPRDFTPVSTTELGRVIQLEGDFKKRGVKLIALSCDNVADHKEWSEDVKCLSGVKGDMPYPIIADETRELAVKL 110 (233)
T ss_dssp EEEEEECSCSSCHHHHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHHHHHHHHTCCSSCSSCEEECTTCHHHHHT
T ss_pred eEEEEEECCCCCCCcHHHHHHHHHHHHHHHHcCCEEEEEcCCCHHHHHHHHHHHHHhhCcccCCceEEEECChHHHHHHh
Confidence 6788887 8999999999999999888773 57777776553 22356788
Q ss_pred Ccc------------ccceEEEE-eCCeEEEEEcCC-----CHHHHHHHHhhh
Q 005108 678 NVR------------IVPTFKIY-KNGSRMKEIVCP-----SRDMLEHSVRHY 712 (714)
Q Consensus 678 ~v~------------~~Pt~~~~-~~G~~~~~~~g~-----~~~~l~~~~~~~ 712 (714)
+|. .+|+++|+ ++|+++..++++ +.++|...|+.+
T Consensus 111 gv~~~~~~~~~g~~~~~p~~fiID~~G~I~~~~~~~~~~gr~~~eilr~l~~L 163 (233)
T 2v2g_A 111 GMVDPDERTSTGMPLTCRAVFIIGPDKKLKLSILYPATTGRNFSEILRVIDSL 163 (233)
T ss_dssp TCEEEEEECTTCCEEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred CCcCcccccCCCcccccceEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHH
Confidence 885 57888777 899999888653 678888877754
|
| >3keb_A Probable thiol peroxidase; structural genomics, APC40679, PSI-2, Pro structure initiative; HET: MSE; 1.80A {Chromobacterium violaceum} | Back alignment and structure |
|---|
Probab=97.09 E-value=0.0018 Score=61.66 Aligned_cols=82 Identities=9% Similarity=0.036 Sum_probs=60.6
Q ss_pred CCceEEEeecCC-Ccccc-----ccchHHHHHHhhCCCcEEEEEeccc-----------------------CcchhhhCC
Q 005108 628 PGVSVVHFKSAS-NLHCK-----QISPYVETLCGRYPSINFLKVDIDE-----------------------SPGVAHAEN 678 (714)
Q Consensus 628 ~~~~vv~f~a~~-c~~C~-----~~~p~l~~l~~~~~~~~~~~vd~d~-----------------------~~~l~~~~~ 678 (714)
.+.+|+.||..| |+.|. ...+.+.++ +.++.++-|.+|. ...++++||
T Consensus 48 Gk~vVL~F~ps~~cp~C~~~~~~~El~~~~~~---~~gv~VvgIS~Ds~~~~~~f~~~~gl~~fplLsD~~~~~vak~yG 124 (224)
T 3keb_A 48 HTPKLIVTLLSVDEDEHAGLLLLRETRRFLDS---WPHLKLIVITVDSPSSLARARHEHGLPNIALLSTLRGRDFHKRYG 124 (224)
T ss_dssp TCCEEEEECSCTTCSTTTSHHHHHHHHHHHTT---CTTSEEEEEESSCHHHHHHHHHHHCCTTCEEEESTTCTTHHHHTT
T ss_pred CCcEEEEEEeCCCCCCCCCCccHHHHHHHHHH---cCCCEEEEEECCCHHHHHHHHHHcCCCCceEEEcCCchHHHHHhC
Confidence 457899999988 99999 666666555 5677887776653 246888999
Q ss_pred ccc---------cceEEEE-eCCeEEEEEcC------CCHHHHHHHHhhh
Q 005108 679 VRI---------VPTFKIY-KNGSRMKEIVC------PSRDMLEHSVRHY 712 (714)
Q Consensus 679 v~~---------~Pt~~~~-~~G~~~~~~~g------~~~~~l~~~~~~~ 712 (714)
|.. +|+++|+ ++|+++...+. ++.+++.+.|+.+
T Consensus 125 v~~~~~~~~G~~~p~tfvID~dG~I~~~~~~~~~~~~pd~~evl~~L~~l 174 (224)
T 3keb_A 125 VLITEYPLSGYTSPAIILADAANVVHYSERLANTRDFFDFDAIEKLLQEG 174 (224)
T ss_dssp CBCCSTTSTTCBCCEEEEECTTCBEEEEEECSBTTCCCCHHHHHHHHHHH
T ss_pred CccccccccCCccCEEEEEcCCCEEEEEEecCCCCCCCCHHHHHHHHHHh
Confidence 975 7887777 89999987653 2567777777654
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=97.05 E-value=0.0051 Score=52.34 Aligned_cols=80 Identities=8% Similarity=-0.052 Sum_probs=67.6
Q ss_pred CcHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHH
Q 005108 240 GDAEELKRMGNELYRKGCF---GEALSMYDKAISLAPR-NAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQR 315 (714)
Q Consensus 240 ~~~~~~~~~g~~~~~~g~~---~~Al~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~ 315 (714)
..++..+..|.++.+..+. .+++.+++..++.+|. .-++++.+|..++++|+|++|+++.+.+++..|++..+...
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~L 117 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL 117 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHH
Confidence 4678899999999888754 5789999999998884 47899999999999999999999999999999999877665
Q ss_pred HHHH
Q 005108 316 LGSL 319 (714)
Q Consensus 316 la~~ 319 (714)
...+
T Consensus 118 k~~I 121 (134)
T 3o48_A 118 KSMV 121 (134)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5444
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.03 E-value=0.0077 Score=51.91 Aligned_cols=82 Identities=7% Similarity=-0.068 Sum_probs=70.0
Q ss_pred CCCcHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHH
Q 005108 238 CGGDAEELKRMGNELYRKGCF---GEALSMYDKAISLAPR-NAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAH 313 (714)
Q Consensus 238 ~p~~~~~~~~~g~~~~~~g~~---~~Al~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 313 (714)
....++..+..|.++.+..+. .+++.+++..++.+|. .-++++.+|..++++|+|++|.++.+.+++.+|++..+.
T Consensus 35 ~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~ 114 (144)
T 1y8m_A 35 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 114 (144)
T ss_dssp TTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHH
T ss_pred CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHH
Confidence 356889999999999988754 5799999999998884 577999999999999999999999999999999998776
Q ss_pred HHHHHH
Q 005108 314 QRLGSL 319 (714)
Q Consensus 314 ~~la~~ 319 (714)
.....+
T Consensus 115 ~Lk~~I 120 (144)
T 1y8m_A 115 ALKSMV 120 (144)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555444
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=97.00 E-value=0.038 Score=63.92 Aligned_cols=27 Identities=15% Similarity=0.105 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHH
Q 005108 434 AYTFFVRAQIEMALGRFENAVTAAEKA 460 (714)
Q Consensus 434 ~~~~~~la~~~~~~g~~~~A~~~~~~a 460 (714)
...|..+|..+.+.++++.|+++|.++
T Consensus 681 ~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 681 EMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 345666677777777777766666654
|
| >4f9z_D Endoplasmic reticulum resident protein 27; thioredoxin fold, ER foldase, ERP57, binding protein; HET: PE3 PE4; 2.20A {Homo sapiens} PDB: 2l4c_A | Back alignment and structure |
|---|
Probab=96.97 E-value=0.0023 Score=61.77 Aligned_cols=94 Identities=10% Similarity=0.124 Sum_probs=71.3
Q ss_pred hHHhhhccCCC-ceEEEeecCCCccccccchHHHHHHhhCCC-cEEEEEeccc--CcchhhhCCcc--ccceEEEEeC-C
Q 005108 619 EQFRAAVSLPG-VSVVHFKSASNLHCKQISPYVETLCGRYPS-INFLKVDIDE--SPGVAHAENVR--IVPTFKIYKN-G 691 (714)
Q Consensus 619 e~~~~~i~~~~-~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~-~~~~~vd~d~--~~~l~~~~~v~--~~Pt~~~~~~-G 691 (714)
+.+......+. ..++.|...||..|..+.+.+.+++.++.+ +.|+.+|.++ ...+++.|||. .+|++.|+.. +
T Consensus 121 ~n~~~~~~~~~~~~~l~f~~~~~~~~~~~~~~~~~vAk~~k~~i~F~~vd~~~~~~~~~l~~fgl~~~~~P~~~i~~~~~ 200 (227)
T 4f9z_D 121 VTVIGLFNSVIQIHLLLIMNKASPEYEENMHRYQKAAKLFQGKILFILVDSGMKENGKVISFFKLKESQLPALAIYQTLD 200 (227)
T ss_dssp HHHHHHHHSSCCEEEEEEECTTSTTHHHHHHHHHHHHHHTTTTCEEEEEETTSGGGHHHHHHTTCCGGGCSEEEEEESSS
T ss_pred ccHHHHhccCCceEEEEEEcCCcchHHHHHHHHHHHHHHhhCCEEEEEeCCccHhHHHHHHHcCCCcccCCEEEEEECCC
Confidence 44444444432 445567788999999999999999999975 9999999964 56788999998 8999999953 3
Q ss_pred eEEEEEc-CC-CHHHHHHHHhhh
Q 005108 692 SRMKEIV-CP-SRDMLEHSVRHY 712 (714)
Q Consensus 692 ~~~~~~~-g~-~~~~l~~~~~~~ 712 (714)
.....+. +. +.+.|+++|+.+
T Consensus 201 ~~ky~~~~~~~t~~~i~~Fv~~~ 223 (227)
T 4f9z_D 201 DEWDTLPTAEVSVEHVQNFCDGF 223 (227)
T ss_dssp CCEEEETTCCCCHHHHHHHHHHH
T ss_pred CccccCCcCCCCHHHHHHHHHHH
Confidence 3334443 44 999999999876
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=96.96 E-value=0.3 Score=50.54 Aligned_cols=123 Identities=14% Similarity=-0.026 Sum_probs=83.7
Q ss_pred HHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccC---CCC
Q 005108 391 CRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQID---PRN 467 (714)
Q Consensus 391 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~~ 467 (714)
.++..|+..|+|.+|.+.+.++.+.-... .+......++....++|...+++.++...+.++.... +.+
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~--------dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~ 175 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKL--------DDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCP 175 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTS--------SCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhcc--------ccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCC
Confidence 58999999999999999988877532221 0112336678888999999999999999999987542 233
Q ss_pred HHHHHHHHhHHHHHHHHHHHhHHh-hCcCHHHHHHHHHHhhccCCCC-----HHHHHHHHHHHHHhCC
Q 005108 468 VEVAVLLNNVKLVARARARGNDLF-KSERFTEACQAYGEGLRFDPSN-----SVLYCNRAACWFKLGQ 529 (714)
Q Consensus 468 ~~~~~~l~~l~~~~~~~~~g~~~~-~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~g~ 529 (714)
+.....+.. .-|..+. ..++|.+|..+|-++++-...- ..+...++.|-...++
T Consensus 176 p~i~a~i~~--------~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~~~ 235 (394)
T 3txn_A 176 PKVQGALDL--------QSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIMLGQ 235 (394)
T ss_dssp HHHHHHHHH--------HHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHH--------HhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHcCC
Confidence 333322211 3488888 8999999999999887532211 2334445555555555
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 714 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 5e-32 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 7e-22 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 1e-21 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 2e-20 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 6e-13 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 3e-08 | |
| d2trcp_ | 217 | c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [ | 8e-21 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 7e-17 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 5e-09 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 1e-07 | |
| d2c2la1 | 201 | a.118.8.1 (A:24-224) STIP1 homology and U box-cont | 2e-16 | |
| d2c2la1 | 201 | a.118.8.1 (A:24-224) STIP1 homology and U box-cont | 3e-14 | |
| d2c2la1 | 201 | a.118.8.1 (A:24-224) STIP1 homology and U box-cont | 3e-11 | |
| d1fcha_ | 323 | a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting | 7e-16 | |
| d1fcha_ | 323 | a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting | 4e-06 | |
| d1fcha_ | 323 | a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting | 2e-05 | |
| d1dcea1 | 334 | a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr | 2e-15 | |
| d1dcea1 | 334 | a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr | 7e-09 | |
| d1ya0a1 | 497 | a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T | 2e-14 | |
| d1ya0a1 | 497 | a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T | 1e-10 | |
| d1ya0a1 | 497 | a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T | 2e-09 | |
| d1ya0a1 | 497 | a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T | 2e-08 | |
| d1ya0a1 | 497 | a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T | 1e-06 | |
| d1ya0a1 | 497 | a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T | 2e-05 | |
| d1elra_ | 128 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 5e-14 | |
| d1elra_ | 128 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 2e-12 | |
| d1elra_ | 128 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 1e-06 | |
| d1hz4a_ | 366 | a.118.8.2 (A:) Transcription factor MalT domain II | 2e-13 | |
| d2ifqa1 | 105 | c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapien | 3e-13 | |
| d1syra_ | 103 | c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plas | 2e-12 | |
| d1gh2a_ | 107 | c.47.1.1 (A:) Thioredoxin-like protein, N-terminal | 6e-12 | |
| d1a17a_ | 159 | a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo | 2e-10 | |
| d1a17a_ | 159 | a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo | 1e-09 | |
| d2fbna1 | 153 | a.118.8.1 (A:22-174) Putative 70 kda peptidylproly | 4e-10 | |
| d2fbna1 | 153 | a.118.8.1 (A:22-174) Putative 70 kda peptidylproly | 3e-07 | |
| d1kt1a1 | 168 | a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M | 4e-10 | |
| d1kt1a1 | 168 | a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M | 7e-09 | |
| d1kt1a1 | 168 | a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M | 5e-08 | |
| d1ti3a_ | 113 | c.47.1.1 (A:) Thioredoxin {European aspen (Populus | 6e-10 | |
| d1r26a_ | 113 | c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [Tax | 2e-09 | |
| d2h6fa1 | 315 | a.118.6.1 (A:55-369) Protein farnesyltransferase a | 2e-09 | |
| d2h6fa1 | 315 | a.118.6.1 (A:55-369) Protein farnesyltransferase a | 1e-05 | |
| d2h6fa1 | 315 | a.118.6.1 (A:55-369) Protein farnesyltransferase a | 3e-05 | |
| d2h6fa1 | 315 | a.118.6.1 (A:55-369) Protein farnesyltransferase a | 0.002 | |
| d1elwa_ | 117 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 2e-09 | |
| d1elwa_ | 117 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 2e-08 | |
| d1qqea_ | 290 | a.118.8.1 (A:) Vesicular transport protein sec17 { | 3e-09 | |
| d1ihga1 | 169 | a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau | 4e-09 | |
| d1ihga1 | 169 | a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau | 2e-08 | |
| d1ihga1 | 169 | a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau | 7e-05 | |
| d1ihga1 | 169 | a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau | 0.001 | |
| d1xnfa_ | 259 | a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli | 1e-08 | |
| d1xnfa_ | 259 | a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli | 2e-08 | |
| d1xnfa_ | 259 | a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli | 3e-08 | |
| d1xnfa_ | 259 | a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli | 2e-06 | |
| d1xnfa_ | 259 | a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli | 8e-05 | |
| d1xnfa_ | 259 | a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli | 0.001 | |
| d1hh8a_ | 192 | a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF- | 1e-08 | |
| d1hh8a_ | 192 | a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF- | 2e-08 | |
| d1hh8a_ | 192 | a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF- | 7e-08 | |
| d1hh8a_ | 192 | a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF- | 4e-04 | |
| d1ep7a_ | 112 | c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardt | 2e-08 | |
| d1woua_ | 119 | c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxi | 2e-08 | |
| d1p5qa1 | 170 | a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal d | 5e-08 | |
| d1p5qa1 | 170 | a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal d | 1e-06 | |
| d1p5qa1 | 170 | a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal d | 1e-04 | |
| d2ff4a2 | 179 | a.118.8.3 (A:105-283) Probable regulatory protein | 7e-08 | |
| d2ff4a2 | 179 | a.118.8.3 (A:105-283) Probable regulatory protein | 1e-07 | |
| d2es7a1 | 119 | c.47.1.20 (A:7-125) Hydrogenase-1 operon protein H | 7e-08 | |
| d1nzna_ | 122 | a.118.8.1 (A:) Mitochondria fission protein Fis1 { | 8e-08 | |
| d1nzna_ | 122 | a.118.8.1 (A:) Mitochondria fission protein Fis1 { | 0.001 | |
| d1nzna_ | 122 | a.118.8.1 (A:) Mitochondria fission protein Fis1 { | 0.002 | |
| d1xfla_ | 114 | c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsi | 9e-08 | |
| d1tjca_ | 95 | a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subuni | 3e-07 | |
| d1tjca_ | 95 | a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subuni | 8e-05 | |
| d1nw2a_ | 105 | c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidoc | 2e-06 | |
| d1f9ma_ | 112 | c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia olera | 3e-05 | |
| d2hr2a1 | 156 | a.118.8.8 (A:2-157) Hypothetical protein CT2138 {C | 3e-05 | |
| d2hr2a1 | 156 | a.118.8.8 (A:2-157) Hypothetical protein CT2138 {C | 5e-05 | |
| d2b5ea1 | 140 | c.47.1.2 (A:365-504) Protein disulfide isomerase, | 2e-04 | |
| d1meka_ | 120 | c.47.1.2 (A:) Protein disulfide isomerase, PDI {Hu | 4e-04 | |
| d1nhoa_ | 85 | c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-lik | 0.001 | |
| d2b5ea4 | 119 | c.47.1.2 (A:23-141) Protein disulfide isomerase, P | 0.001 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 126 bits (316), Expect = 5e-32
Identities = 50/353 (14%), Positives = 107/353 (30%), Gaps = 34/353 (9%)
Query: 245 LKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVR 304
+ + Y+ G F A + P N ++ R+ + A++
Sbjct: 2 PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK 61
Query: 305 LDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKV 364
+P A+ LG++ + + + A + + + A +
Sbjct: 62 QNPLLAEAYSNLGNVY----KERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDM 117
Query: 365 GDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQ 424
A L ++ P
Sbjct: 118 EGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNF--------- 168
Query: 425 TRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARAR 484
A + + A G A+ EKA +DP ++ + L
Sbjct: 169 ---------AVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINL---------- 209
Query: 485 ARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQ 544
GN L ++ F A AY L P+++V++ N A +++ G + +++ +A+ +Q
Sbjct: 210 --GNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ 267
Query: 545 PNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAESLFHAQVSLKK 597
P++ A A + + A+A + R P + +L + +
Sbjct: 268 PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGN 320
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 96.3 bits (238), Expect = 7e-22
Identities = 51/384 (13%), Positives = 104/384 (27%), Gaps = 57/384 (14%)
Query: 241 DAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAAL-------------- 286
+ L + + ++ + AI P A SN
Sbjct: 32 NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYR 91
Query: 287 --TGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTE 344
L A + + ++ R + +A
Sbjct: 92 HALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRL 151
Query: 345 VHRLQVVEKHLSKCTD-----------ARKVGDWKSALREGDAAIAAGADFSPQLSMCRV 393
K + + G+ A+ + A+ +F +
Sbjct: 152 EEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNF-LDAYINLG 210
Query: 394 EALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENA 453
L + + A ++ + P+ A A + G + A
Sbjct: 211 NVLKEARIFDRAVAAYLRALSLSPNH--------------AVVHGNLACVYYEQGLIDLA 256
Query: 454 VTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSN 513
+ +A ++ P + N N L + EA Y LR P++
Sbjct: 257 IDTYRRAIELQPHFPDA---YCN---------LANALKEKGSVAEAEDCYNTALRLCPTH 304
Query: 514 SVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEV 573
+ N A + G E +V +AL + P + A A+ + K +A+ ++
Sbjct: 305 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKE 364
Query: 574 LRRELPDDNEIAESLFHAQVSLKK 597
R P A++ + +LK+
Sbjct: 365 AIRISPTF---ADAYSNMGNTLKE 385
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 95.5 bits (236), Expect = 1e-21
Identities = 48/288 (16%), Positives = 80/288 (27%), Gaps = 68/288 (23%)
Query: 241 DAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECE 300
A +G +G A+ ++KA++L P N L AV
Sbjct: 168 FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYL 227
Query: 301 EAVRLDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTD 360
A+ L PN+ H L + G ++ A
Sbjct: 228 RALSLSPNHAVVHGNLACVYYEQGLIDLAIDTY--------------------------- 260
Query: 361 ARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTV 420
AI F P AL + + +AE + ++ P+
Sbjct: 261 --------------RRAIELQPHF-PDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHA 305
Query: 421 SSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLV 480
+ A I+ G E AV KA ++ P +N
Sbjct: 306 --------------DSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAA---HSN---- 344
Query: 481 ARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLG 528
+ L + + EA Y E +R P+ + Y N ++
Sbjct: 345 -----LASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 91.7 bits (226), Expect = 2e-20
Identities = 52/315 (16%), Positives = 94/315 (29%), Gaps = 68/315 (21%)
Query: 248 MGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDP 307
+GN L G EA + Y KAI P A SN G I A+ E+AV LDP
Sbjct: 141 LGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP 200
Query: 308 NYWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDW 367
N+ A+ LG++L + A +
Sbjct: 201 NFLDAYINLGNVLKEARIFDRA----------------------VAAYLRALSLS----- 233
Query: 368 KSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRF 427
+ + ++ A + +++P
Sbjct: 234 ---------------PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH--------- 269
Query: 428 FGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARG 487
+AY A G A A ++ P + + L N+
Sbjct: 270 ---FPDAY--CNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANI---------- 314
Query: 488 NDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNY 547
+ EA + Y + L P + + N A+ + G+ + ++ +A+ I P +
Sbjct: 315 --KREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF 372
Query: 548 TKALLRRAASNSKLE 562
A + +++
Sbjct: 373 ADAYSNMGNTLKEMQ 387
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 68.9 bits (167), Expect = 6e-13
Identities = 34/143 (23%), Positives = 54/143 (37%), Gaps = 7/143 (4%)
Query: 237 ICGGDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAV 296
+ A + Y +G A+ Y +AI L P N A AL G + EA
Sbjct: 232 LSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAE 291
Query: 297 KECEEAVRLDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLS 356
A+RL P + + L ++ G +E A R ++A EV + H +
Sbjct: 292 DCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLY----RKA--LEVFP-EFAAAHSN 344
Query: 357 KCTDARKVGDWKSALREGDAAIA 379
+ ++ G + AL AI
Sbjct: 345 LASVLQQQGKLQEALMHYKEAIR 367
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.9 bits (128), Expect = 3e-08
Identities = 18/122 (14%), Positives = 35/122 (28%)
Query: 486 RGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQP 545
G A + + + DP+ Y N + ++R+V +AL + P
Sbjct: 175 LGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP 234
Query: 546 NYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAESLFHAQVSLKKSRGEEVYN 605
N+ A + A+ + P + +L +A E
Sbjct: 235 NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCY 294
Query: 606 MK 607
Sbjct: 295 NT 296
|
| >d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 217 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Phosducin domain: Phosducin species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 89.3 bits (221), Expect = 8e-21
Identities = 28/181 (15%), Positives = 69/181 (38%), Gaps = 9/181 (4%)
Query: 525 FKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEI 584
FKL + E I + R + + +++++E++ ++ D+ +
Sbjct: 19 FKL-ESEDGDSIPPSKKEILRQMSSPQSRDDKDSKERMSRKMSIQEYELIHQDKEDEGCL 77
Query: 585 AESLFHAQVSLKKSRGEEVYNMKFGGEVEEVSSLEQFRAAVSLPGVS---VVHFKSASNL 641
+ + + ++ + + ++G V E+ + EQF + VV+
Sbjct: 78 RK---YRRQCMQDMHQKLSFGPRYG-FVYELETGEQFLETIEKEQKVTTIVVNIYEDGVR 133
Query: 642 HCKQISPYVETLCGRYPSINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKEIVCPS 701
C ++ +E L YP + F K+ + + ++PT +YK G + + +
Sbjct: 134 GCDALNSSLECLAAEYPMVKFCKIRASNTGAGDRF-SSDVLPTLLVYKGGELISNFISVA 192
Query: 702 R 702
Sbjct: 193 E 193
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 78.9 bits (194), Expect = 7e-17
Identities = 20/148 (13%), Positives = 50/148 (33%), Gaps = 6/148 (4%)
Query: 249 GNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPN 308
+G +AL + +AI +P++A+ RS+ L G A ++ ++++L P
Sbjct: 3 WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE 62
Query: 309 YWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWK 368
Y +L L+ ++ + + + E+ + V + D++
Sbjct: 63 YLPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLV------SFNLSMVSQDYE 116
Query: 369 SALREGDAAIAAGADFSPQLSMCRVEAL 396
+ + +
Sbjct: 117 QVSELALQIEELRQEKGFLANDTSFSDV 144
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 55.4 bits (133), Expect = 5e-09
Identities = 22/203 (10%), Positives = 59/203 (29%), Gaps = 22/203 (10%)
Query: 440 RAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEA 499
+ + ++ G+ + A+ +A + P++ + L F A
Sbjct: 2 QWKNALSEGQLQQALELLIEAIKASPKDASLRSSF------------IELLCIDGDFERA 49
Query: 500 CQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQ-ALLIQPNYTKALLRRAASN 558
+ + ++ P + + + +L + L +
Sbjct: 50 DEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLS 109
Query: 559 SKLEKWADAVRDFEVLRRELPDDNEIAESLFHAQVSLKKSRGEEVYNMKFGGEVEEVSSL 618
+ + + + +A + V R GG +E S+
Sbjct: 110 MVSQDYEQVSELALQIEELRQEKGFLANDTSFSDVRDIDDR--------LGGYIELFSTA 161
Query: 619 EQFRAAVSLPGVSVVHFKSASNL 641
+ V + ++ + KSA++L
Sbjct: 162 GNYF-LVPIASINTLEIKSATSL 183
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 51.6 bits (123), Expect = 1e-07
Identities = 13/95 (13%), Positives = 21/95 (22%), Gaps = 1/95 (1%)
Query: 240 GDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVK-E 298
DA L G F A ++I L P S + + +
Sbjct: 28 KDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFAQGA 87
Query: 299 CEEAVRLDPNYWRAHQRLGSLLVRLGQVENARRHL 333
V + +L + E
Sbjct: 88 ATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELA 122
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 76.2 bits (186), Expect = 2e-16
Identities = 28/92 (30%), Positives = 47/92 (51%)
Query: 242 AEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEE 301
A+ELK GN L+ + EA + Y +AI+ P A + +NRA + + +A+ +C
Sbjct: 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRR 63
Query: 302 AVRLDPNYWRAHQRLGSLLVRLGQVENARRHL 333
A+ LD +AH LG + + + A +L
Sbjct: 64 ALELDGQSVKAHFFLGQCQLEMESYDEAIANL 95
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 69.6 bits (169), Expect = 3e-14
Identities = 26/124 (20%), Positives = 53/124 (42%)
Query: 484 RARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLI 543
+ +GN LF ++ EA YG + +P +V Y NRA C+ K+ Q E+++ D +AL +
Sbjct: 8 KEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL 67
Query: 544 QPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAESLFHAQVSLKKSRGEEV 603
KA ++E + +A+ + + + + + + K +
Sbjct: 68 DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNS 127
Query: 604 YNMK 607
+
Sbjct: 128 IEER 131
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 61.1 bits (147), Expect = 3e-11
Identities = 19/160 (11%), Positives = 44/160 (27%), Gaps = 12/160 (7%)
Query: 433 EAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFK 492
A + ++ A +A +P AV N R K
Sbjct: 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLV---AVYYTN---------RALCYLK 50
Query: 493 SERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALL 552
++ +A L D + + C ++ ++ ++ + +A +
Sbjct: 51 MQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFG 110
Query: 553 RRAASNSKLEKWADAVRDFEVLRRELPDDNEIAESLFHAQ 592
S ++ K E + + + L A+
Sbjct: 111 DDIPSALRIAKKKRWNSIEERRIHQESELHSYLTRLIAAE 150
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Score = 77.2 bits (188), Expect = 7e-16
Identities = 47/310 (15%), Positives = 78/310 (25%), Gaps = 39/310 (12%)
Query: 265 YDKAISLAPRN------AAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGS 318
YDK N F G + AV E AV+ DP + A Q LG+
Sbjct: 4 YDKGYQFEEENPLRDHPQPF--EEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGT 61
Query: 319 LLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREG---- 374
Q A L + + + + ++ + + LR
Sbjct: 62 TQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYA 121
Query: 375 ---DAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGML 431
A S + +LL + + +++P+++ G+L
Sbjct: 122 HLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVL 181
Query: 432 SEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLF 491
+ +A G L
Sbjct: 182 FNLSGEYDKAVDCFTAALS------------------------VRPNDYLLWNKLGATLA 217
Query: 492 KSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKAL 551
+ EA AY L P N LG +VE +AL +Q
Sbjct: 218 NGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPR 277
Query: 552 LRRAASNSKL 561
A + +
Sbjct: 278 GEGGAMSENI 287
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.1 bits (110), Expect = 4e-06
Identities = 22/94 (23%), Positives = 32/94 (34%), Gaps = 11/94 (11%)
Query: 248 MGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDP 307
+G L EA++ Y +A+ L P R N + LG EAV+ EA+ +
Sbjct: 212 LGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQR 271
Query: 308 N-----------YWRAHQRLGSLLVRLGQVENAR 330
L L LGQ +
Sbjct: 272 KSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG 305
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.8 bits (104), Expect = 2e-05
Identities = 11/75 (14%), Positives = 25/75 (33%), Gaps = 4/75 (5%)
Query: 502 AYGEGLRFDPSNSVLYC----NRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAAS 557
Y +G +F+ N + + G +V A+ P + +A +
Sbjct: 3 TYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTT 62
Query: 558 NSKLEKWADAVRDFE 572
++ E+ A+
Sbjct: 63 QAENEQELLAISALR 77
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 75.8 bits (185), Expect = 2e-15
Identities = 39/322 (12%), Positives = 74/322 (22%), Gaps = 50/322 (15%)
Query: 260 EALSMYDKAISLAPRNAAFRSNRAAALTGLGRIG----------EAVKECEEAVRLDPNY 309
L + + + P A + R L L + E +R++P
Sbjct: 47 SVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKS 106
Query: 310 WRAHQRLGSLLVRLGQVENARR-HLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWK 368
+ LL RL + AR LC +AD H ++
Sbjct: 107 YGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAA-----VAPA 161
Query: 369 SALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFF 428
L D+ I R L +LH D+
Sbjct: 162 EELAFTDSLITRNFSNYSSW-HYRSCLLPQLHPQPDSGPQ------------------GR 202
Query: 429 GMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGN 488
+ Q + + + + L
Sbjct: 203 LPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELS------------VE 250
Query: 489 DLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQP--- 545
+ E+C+ E + + L + +++ + + P
Sbjct: 251 KSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRA 310
Query: 546 NYTKALLRRAASNSKLEKWADA 567
Y L + + + K A
Sbjct: 311 AYLDDLRSKFLLENSVLKMEYA 332
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 55.8 bits (133), Expect = 7e-09
Identities = 11/94 (11%), Positives = 22/94 (23%), Gaps = 7/94 (7%)
Query: 241 DAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECE 300
+ + E+ + AL L E ++
Sbjct: 241 PLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFS 300
Query: 301 EAVRLDP---NYWRAHQRLGSLLVR--LGQVENA 329
+DP Y L+ + ++E A
Sbjct: 301 TLKAVDPMRAAYLD--DLRSKFLLENSVLKMEYA 332
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 74.1 bits (181), Expect = 2e-14
Identities = 33/291 (11%), Positives = 67/291 (23%), Gaps = 72/291 (24%)
Query: 260 EALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSL 319
++ +A L + A T + + ++ + D Y + L
Sbjct: 4 QSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVEQDL 60
Query: 320 LVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIA 379
W A + +
Sbjct: 61 -----------------------------------------------WNHAFKNQITTLQ 73
Query: 380 AGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFV 439
A + V+A L L LE A + + + T F L
Sbjct: 74 GQAKNRANPNRSEVQANLSLF-LEAASGFYTQL-------LQELCTVFNVDLPCRVKSSQ 125
Query: 440 RAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEA 499
I V + ++ L + G+ + ++A
Sbjct: 126 LGIISNKQTHTSAIVKPQSSSCSYICQHC-----LVH---------LGDIARYRNQTSQA 171
Query: 500 CQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKA 550
Y + PSN Y A G ++ +++ ++ + A
Sbjct: 172 ESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAA 222
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 62.1 bits (150), Expect = 1e-10
Identities = 21/281 (7%), Positives = 58/281 (20%), Gaps = 76/281 (27%)
Query: 294 EAVKECEEAVRLDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEK 353
++ + +A L + + + +++ + + + D
Sbjct: 4 QSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDLYQKMLV----TDL----------- 48
Query: 354 HLSKCTDARKVGD--WKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSN 411
+ +KV W A + ++ L + +
Sbjct: 49 ---EYALDKKVEQDLWNHAFKN------------------QITTLQGQAKNRANPNR--- 84
Query: 412 IPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVA 471
S Q L A F+ + +D
Sbjct: 85 ---------SEVQANLSLFLEAASGFY------------TQLLQELCTVFNVDLPCRVK- 122
Query: 472 VLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWE 531
+ G K + + + + + Q
Sbjct: 123 --SSQ---------LGIISNKQTHTSAIVKPQSSSCSYICQHC--LVHLGDIARYRNQTS 169
Query: 532 RSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFE 572
++ A + P+ + + A S + +
Sbjct: 170 QAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYC 210
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 58.3 bits (140), Expect = 2e-09
Identities = 25/203 (12%), Positives = 55/203 (27%), Gaps = 6/203 (2%)
Query: 242 AEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEE 301
L +G+ + +A S Y A L P N + A + G +
Sbjct: 152 QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCR 211
Query: 302 AVRLDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDA 361
++ + + A L L + + + + + ++ +
Sbjct: 212 SIAVKFPFPAASTNLQKALSKALESRDEVK----TKWGVSDFIKAFIKFHGHVYLSKSLE 267
Query: 362 RKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVS 421
+ + + + A S QL V L +LH L D +
Sbjct: 268 KLSPLREKLEEQFKELLFQKAFNSQQLVHVTVINLFQLHHLRDFSNETE--QHTYSQDEQ 325
Query: 422 SSQTRFFGMLSEAYTFFVRAQIE 444
T+ + + ++
Sbjct: 326 LCWTQLLALFMSFLGILCKCPLQ 348
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.2 bits (132), Expect = 2e-08
Identities = 9/93 (9%), Positives = 27/93 (29%), Gaps = 2/93 (2%)
Query: 241 DAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECE 300
+ ++G ++ + + S ++ + + +A
Sbjct: 119 CRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHCLV--HLGDIARYRNQTSQAESYYR 176
Query: 301 EAVRLDPNYWRAHQRLGSLLVRLGQVENARRHL 333
A +L P+ + + +L L G +
Sbjct: 177 HAAQLVPSNGQPYNQLAILASSKGDHLTTIFYY 209
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.0 bits (116), Expect = 1e-06
Identities = 24/184 (13%), Positives = 48/184 (26%), Gaps = 23/184 (12%)
Query: 429 GMLSEAYTFFVRAQIEMALGR----------FENAVTAAEKAGQIDPRNVEVAVLLNNVK 478
L + Y + +E AL + F+N +T + + V N
Sbjct: 34 QALQDLYQKMLVTDLEYALDKKVEQDLWNHAFKNQITTLQGQAKNRANPNRSEVQANLSL 93
Query: 479 LVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSN 538
+ A S +T+ Q D V K V+ +
Sbjct: 94 FLEAA---------SGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQS 144
Query: 539 QALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAESLFHAQVSLKKS 598
+ L+ + + A + + +P + + L A ++ K
Sbjct: 145 SS--CSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQL--AILASSKG 200
Query: 599 RGEE 602
Sbjct: 201 DHLT 204
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.5 bits (107), Expect = 2e-05
Identities = 17/137 (12%), Positives = 29/137 (21%), Gaps = 16/137 (11%)
Query: 255 KGCFGEALSMYDKAIS-------LAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDP 307
A Y + + + S VK +
Sbjct: 92 SLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYIC 151
Query: 308 NYWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDW 367
LG + Q A + + Q P + + A GD
Sbjct: 152 Q--HCLVHLGDIARYRNQTSQAESYYRHA-AQLVP------SNGQPYNQLAILASSKGDH 202
Query: 368 KSALREGDAAIAAGADF 384
+ + +IA F
Sbjct: 203 LTTIFYYCRSIAVKFPF 219
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 67.2 bits (163), Expect = 5e-14
Identities = 33/129 (25%), Positives = 57/129 (44%), Gaps = 16/129 (12%)
Query: 239 GGDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKE 298
G A + K +GN+ Y+K F AL YDKA L P N + +N+AA G + +
Sbjct: 1 GKQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCREL 60
Query: 299 CEEAVRLDP-------NYWRAHQRLGSLLVRLGQVENARRHLCLSGQQA-----DPTEVH 346
CE+A+ + +A+ R+G+ + + ++A ++ P +
Sbjct: 61 CEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFY----NKSLAEHRTPDVLK 116
Query: 347 RLQVVEKHL 355
+ Q EK L
Sbjct: 117 KCQQAEKIL 125
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 62.6 bits (151), Expect = 2e-12
Identities = 30/124 (24%), Positives = 53/124 (42%), Gaps = 10/124 (8%)
Query: 482 RARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQAL 541
+ + GND +K + F A + Y + DP+N N+AA +F+ G + + E +A+
Sbjct: 6 KEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAI 65
Query: 542 LIQP-------NYTKALLRRAASNSKLEKWADAVRDFE-VLRRELPDDNEIAESLFHAQV 593
+ KA R S K EK+ DA+ + L ++ + A+
Sbjct: 66 EVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSL--AEHRTPDVLKKCQQAEK 123
Query: 594 SLKK 597
LK+
Sbjct: 124 ILKE 127
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.0 bits (108), Expect = 1e-06
Identities = 17/126 (13%), Positives = 39/126 (30%), Gaps = 19/126 (15%)
Query: 445 MALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYG 504
F+ A+ +KA ++DP N + N F+ + + +
Sbjct: 15 YKKKDFDTALKHYDKAKELDPTN---MTYITNQA---------AVYFEKGDYNKCRELCE 62
Query: 505 EGLRFDPSNSVLYC-------NRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAAS 557
+ + N Y +FK +++ ++ N++L + A
Sbjct: 63 KAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQAE 122
Query: 558 NSKLEK 563
E+
Sbjct: 123 KILKEQ 128
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Score = 69.9 bits (169), Expect = 2e-13
Identities = 43/323 (13%), Positives = 90/323 (27%), Gaps = 27/323 (8%)
Query: 267 KAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPN-----YWRAHQRLGSLLV 321
K I +A F + RA G EA + + A+ P A LG +L
Sbjct: 3 KDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLH 62
Query: 322 RLGQVENARRHLCLSGQQADPTEVHRLQVV------EKHLSKCTDARKVGDWKSALREGD 375
G++ + + + Q A +V + E ++ + A + +
Sbjct: 63 CKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLIN 122
Query: 376 AAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAY 435
L R + L +L++AE+S + ++ S Q + +
Sbjct: 123 EQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSS--YQPQQQLQCLAMLIQ 180
Query: 436 TFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSER 495
R ++ A + + + +A + +
Sbjct: 181 CSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLR--- 237
Query: 496 FTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLI------QPNYTK 549
+ + N A LG++E + + + +
Sbjct: 238 -----HTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNR 292
Query: 550 ALLRRAASNSKLEKWADAVRDFE 572
LL + + +DA R
Sbjct: 293 NLLLLNQLYWQAGRKSDAQRVLL 315
|
| >d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens) [TaxId: 9606]} Length = 105 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Human (Homo sapiens) [TaxId: 9606]
Score = 64.0 bits (155), Expect = 3e-13
Identities = 30/103 (29%), Positives = 56/103 (54%), Gaps = 2/103 (1%)
Query: 612 VEEVSSLEQFRAAVSLPG--VSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDE 669
V+++ S F+ A+ G + VV F + CK I P+ +L +Y ++ FL+VD+D+
Sbjct: 2 VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDD 61
Query: 670 SPGVAHAENVRIVPTFKIYKNGSRMKEIVCPSRDMLEHSVRHY 712
VA V+ +PTF+ +K G ++ E +++ LE ++
Sbjct: 62 CQDVASECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATINEL 104
|
| >d1syra_ c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 103 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]
Score = 61.4 bits (148), Expect = 2e-12
Identities = 33/102 (32%), Positives = 57/102 (55%)
Query: 612 VEEVSSLEQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESP 671
V+ V+S +F + +S + +V F + CK+I+P+ E Y + F+KVD+DE
Sbjct: 2 VKIVTSQAEFDSIISQNELVIVDFFAEWCGPCKRIAPFYEECSKTYTKMVFIKVDVDEVS 61
Query: 672 GVAHAENVRIVPTFKIYKNGSRMKEIVCPSRDMLEHSVRHYS 713
V EN+ +PTFK+YKNGS + ++ + L+ + Y+
Sbjct: 62 EVTEKENITSMPTFKVYKNGSSVDTLLGANDSALKQLIEKYA 103
|
| >d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 107 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin-like protein, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 60.5 bits (146), Expect = 6e-12
Identities = 28/103 (27%), Positives = 50/103 (48%), Gaps = 2/103 (1%)
Query: 612 VEEVSSLEQFRAAVSLPG--VSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDE 669
V+ V S F+ +S G ++VV F C +I+P ++ +YP FL+VD+ +
Sbjct: 3 VKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQ 62
Query: 670 SPGVAHAENVRIVPTFKIYKNGSRMKEIVCPSRDMLEHSVRHY 712
G A N+ PTF+ ++N R+ + LE ++ +
Sbjct: 63 CQGTAATNNISATPTFQFFRNKVRIDQYQGADAVGLEEKIKQH 105
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 159 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.4 bits (137), Expect = 2e-10
Identities = 32/119 (26%), Positives = 61/119 (51%)
Query: 484 RARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLI 543
+ + ND FK++ + A + Y + + +PSN++ Y NR+ + + + ++ D+ +A+ +
Sbjct: 14 KTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL 73
Query: 544 QPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAESLFHAQVSLKKSRGEE 602
Y K RRAASN L K+ A+RD+E + + P D + +K+ E
Sbjct: 74 DKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFER 132
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 159 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.4 bits (132), Expect = 1e-09
Identities = 32/139 (23%), Positives = 58/139 (41%), Gaps = 5/139 (3%)
Query: 242 AEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEE 301
AEELK N+ ++ + A+ Y +AI L P NA + NR+ A G A+ +
Sbjct: 10 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATR 69
Query: 302 AVRLDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDA 361
A+ LD Y + + R + + LG+ A R + + P + + +C
Sbjct: 70 AIELDKKYIKGYYRRAASNMALGKFRAALRD-YETVVKVKPHDKD----AKMKYQECNKI 124
Query: 362 RKVGDWKSALREGDAAIAA 380
K ++ A+ + +
Sbjct: 125 VKQKAFERAIAGDEHKRSV 143
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Score = 56.9 bits (136), Expect = 4e-10
Identities = 29/139 (20%), Positives = 50/139 (35%), Gaps = 16/139 (11%)
Query: 477 VKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNS----------------VLYCNR 520
V+ + GN+ FK EA Y E L F N
Sbjct: 14 VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNL 73
Query: 521 AACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPD 580
A C+ K + ++++ +++ L I N KAL + +N +A + P+
Sbjct: 74 ATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN 133
Query: 581 DNEIAESLFHAQVSLKKSR 599
+ +I S LK++R
Sbjct: 134 NLDIRNSYELCVNKLKEAR 152
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Score = 48.5 bits (114), Expect = 3e-07
Identities = 20/134 (14%), Positives = 35/134 (26%), Gaps = 50/134 (37%)
Query: 242 AEELKRMGNELYRKGCFGEALSMYDKAISLAPRN----------------AAFRSNRAAA 285
A ++K GNE ++K EA+ Y +A+ + N A
Sbjct: 17 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATC 76
Query: 286 LTG----------------------------------LGRIGEAVKECEEAVRLDPNYWR 311
G + EA + +A L+PN
Sbjct: 77 YNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLD 136
Query: 312 AHQRLGSLLVRLGQ 325
+ +L +
Sbjct: 137 IRNSYELCVNKLKE 150
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Score = 56.9 bits (136), Expect = 4e-10
Identities = 28/141 (19%), Positives = 54/141 (38%), Gaps = 15/141 (10%)
Query: 477 VKLVARARARGNDLFKSERFTEACQAY---------------GEGLRFDPSNSVLYCNRA 521
++ A + +G FK ++ +A Y E + + N A
Sbjct: 12 LEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLA 71
Query: 522 ACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDD 581
C+ KL ++ ++VE ++AL + K L RR + + ++ A DFE + P +
Sbjct: 72 MCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQN 131
Query: 582 NEIAESLFHAQVSLKKSRGEE 602
+F Q K+ +
Sbjct: 132 KAARLQIFMCQKKAKEHNERD 152
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Score = 53.4 bits (127), Expect = 7e-09
Identities = 16/142 (11%), Positives = 33/142 (23%), Gaps = 49/142 (34%)
Query: 242 AEELKRMGNELYRKGCFGEALSMYDKAISLA---------------PRNAAFRSNRAAAL 286
A +K G ++ G + +A+ Y K +S A N A
Sbjct: 15 AAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCY 74
Query: 287 T----------------------------------GLGRIGEAVKECEEAVRLDPNYWRA 312
+ A + E+ + ++P A
Sbjct: 75 LKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAA 134
Query: 313 HQRLGSLLVRLGQVENARRHLC 334
++ + + R
Sbjct: 135 RLQIFMCQKKAKEHNERDRRTY 156
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Score = 51.1 bits (121), Expect = 5e-08
Identities = 23/145 (15%), Positives = 46/145 (31%), Gaps = 3/145 (2%)
Query: 430 MLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGND 489
L +A + + G++ AV K ++ + A N
Sbjct: 11 KLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNL 70
Query: 490 ---LFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPN 546
K +T+A + + L D +N R + ++E + D + L + P
Sbjct: 71 AMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ 130
Query: 547 YTKALLRRAASNSKLEKWADAVRDF 571
A L+ K ++ + R
Sbjct: 131 NKAARLQIFMCQKKAKEHNERDRRT 155
|
| >d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus tremula), thioredoxin H [TaxId: 113636]} Length = 113 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: European aspen (Populus tremula), thioredoxin H [TaxId: 113636]
Score = 55.2 bits (132), Expect = 6e-10
Identities = 32/108 (29%), Positives = 52/108 (48%), Gaps = 4/108 (3%)
Query: 610 GEVEEVSSLE----QFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKV 665
G+V +++ F + VV F ++ CK I+P L ++P++ FLKV
Sbjct: 4 GQVIACHTVDTWKEHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFPNVTFLKV 63
Query: 666 DIDESPGVAHAENVRIVPTFKIYKNGSRMKEIVCPSRDMLEHSVRHYS 713
D+DE VA NV +PTF K+G + + V +D L V ++
Sbjct: 64 DVDELKAVAEEWNVEAMPTFIFLKDGKLVDKTVGADKDGLPTLVAKHA 111
|
| >d1r26a_ c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [TaxId: 5691]} Length = 113 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Trypanosoma brucei [TaxId: 5691]
Score = 53.7 bits (128), Expect = 2e-09
Identities = 29/99 (29%), Positives = 50/99 (50%)
Query: 612 VEEVSSLEQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESP 671
V +V S+EQFR +S ++V F + CK I +E + +P++ F KVD D +
Sbjct: 10 VVDVYSVEQFRNIMSEDILTVAWFTAVWCGPCKTIERPMEKIAYEFPTVKFAKVDADNNS 69
Query: 672 GVAHAENVRIVPTFKIYKNGSRMKEIVCPSRDMLEHSVR 710
+ V +PTF I ++G + ++ + ML +R
Sbjct: 70 EIVSKCRVLQLPTFIIARSGKMLGHVIGANPGMLRQKLR 108
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.7 bits (138), Expect = 2e-09
Identities = 31/259 (11%), Positives = 59/259 (22%), Gaps = 40/259 (15%)
Query: 242 AEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGR-IGEAVKECE 300
+ L R A + AI L N R L L + + E +
Sbjct: 43 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYIT 102
Query: 301 EAVRLDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQ---------------------- 338
+ P ++ L+ L +
Sbjct: 103 AIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLW 162
Query: 339 -----------QADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQ 387
+ D +S T + ++ I
Sbjct: 163 DNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESA 222
Query: 388 LSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMAL 447
+ + L+ L + L+ + ++P S S L + Y + Q +
Sbjct: 223 WNYLKGI--LQDRGLSKYPNLLNQLLDLQP---SHSSPYLIAFLVDIYEDMLENQCDNKE 277
Query: 448 GRFENAVTAAEK-AGQIDP 465
A+ E A + D
Sbjct: 278 DILNKALELCEILAKEKDT 296
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.3 bits (106), Expect = 1e-05
Identities = 19/176 (10%), Positives = 50/176 (28%), Gaps = 21/176 (11%)
Query: 435 YTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSE 494
+ R + L + D +N + R + + +
Sbjct: 113 QVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYH------------AWQHRQWVIQEFK 160
Query: 495 RFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLG------QWERSVEDSNQALLIQPNYT 548
+ Q + L+ D N+ ++ R ER V+ + + + + P+
Sbjct: 161 LWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNE 220
Query: 549 KALLRRAA--SNSKLEKWADAVRDFEVLRRELPDDNEIAESLFHAQVSLKKSRGEE 602
A + L K+ + + L + + L + +++ +
Sbjct: 221 SAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDN 275
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.2 bits (103), Expect = 3e-05
Identities = 26/203 (12%), Positives = 54/203 (26%), Gaps = 31/203 (15%)
Query: 432 SEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVA-----VLLNNVKLVARA--- 483
+ Y +F + R E A A +++ N V +L + K +
Sbjct: 43 RDVYDYF--RAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNY 100
Query: 484 ---------------RARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLG 528
R + ++ + + L D N + +R +
Sbjct: 101 ITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFK 160
Query: 529 QWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRREL------PDDN 582
W+ ++ +Q L +R S + D ++ L P +
Sbjct: 161 LWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNE 220
Query: 583 EIAESLFHAQVSLKKSRGEEVYN 605
L S+ + N
Sbjct: 221 SAWNYLKGILQDRGLSKYPNLLN 243
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.4 bits (88), Expect = 0.002
Identities = 8/65 (12%), Positives = 21/65 (32%)
Query: 507 LRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWAD 566
+ + +Y A + + ER+ + + A+ + R L+K
Sbjct: 36 IIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLH 95
Query: 567 AVRDF 571
++
Sbjct: 96 EEMNY 100
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.5 bits (127), Expect = 2e-09
Identities = 28/115 (24%), Positives = 40/115 (34%), Gaps = 34/115 (29%)
Query: 242 AEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRS--------------------- 280
ELK GN+ G +AL Y +AI L P N S
Sbjct: 3 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCK 62
Query: 281 -------------NRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVR 322
+AAAL L R EA + EE ++ + N + + L ++ R
Sbjct: 63 TVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEAR 117
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.8 bits (120), Expect = 2e-08
Identities = 30/109 (27%), Positives = 60/109 (55%)
Query: 484 RARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLI 543
+ +GN +A Q Y E ++ DP N VLY NR+A + K G ++++ ED + + +
Sbjct: 7 KEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL 66
Query: 544 QPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAESLFHAQ 592
+P++ K R+AA+ L ++ +A R +E + ++ ++ E L + +
Sbjct: 67 KPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 115
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 290 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 56.5 bits (135), Expect = 3e-09
Identities = 26/272 (9%), Positives = 61/272 (22%), Gaps = 39/272 (14%)
Query: 242 AEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEE 301
A+ + + A + KA + + ++
Sbjct: 37 ADLCVQAATIYRLRKELNLAGDSFLKAADYQKKA-GNEDEAGNTYVEAYKCFKSGGNSVN 95
Query: 302 AVRLDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDA 361
+ + + GQ + ++H +
Sbjct: 96 -------AVDSLENAIQIFTHRGQFRRGANFKF-ELGEILENDLHDYAKAIDCYELAGEW 147
Query: 362 RKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVS 421
+ + A + Q +A S + K
Sbjct: 148 YAQDQSVALSNKCFIKCA--------------DLKALDGQYIEASDIYSKLIKSSMGNRL 193
Query: 422 SSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPR--NVEVAVLLNNVKL 479
S S F + ++A A ++ DP + + L ++
Sbjct: 194 SQ-------WSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSL-- 244
Query: 480 VARARARGNDLFKSERFTEACQAYGEGLRFDP 511
+ SE+ +E C+ + +R D
Sbjct: 245 -----IDAVNEGDSEQLSEHCKEFDNFMRLDK 271
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Score = 54.3 bits (129), Expect = 4e-09
Identities = 35/142 (24%), Positives = 60/142 (42%), Gaps = 16/142 (11%)
Query: 477 VKLVARARARGNDLFKSERFTEACQAY----------------GEGLRFDPSNSVLYCNR 520
+ + + GN FKS+ + A + Y +G + P N
Sbjct: 24 LLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNI 83
Query: 521 AACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPD 580
AC K+ W+ +V+ +AL I P+ TKAL RRA L+++ A+ D + + P+
Sbjct: 84 GACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE 143
Query: 581 DNEIAESLFHAQVSLKKSRGEE 602
D I L + +K + +E
Sbjct: 144 DKAIQAELLKVKQKIKAQKDKE 165
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Score = 52.0 bits (123), Expect = 2e-08
Identities = 18/140 (12%), Positives = 38/140 (27%), Gaps = 50/140 (35%)
Query: 242 AEELKRMGNELYRKGCFGEALSMYDKA----------------ISLAPRNAAFRSNRAA- 284
+E+LK +GN ++ + A+ Y K L P + N A
Sbjct: 27 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGAC 86
Query: 285 ---------------------------------ALTGLGRIGEAVKECEEAVRLDPNYWR 311
GL +A+ + ++A + P
Sbjct: 87 KLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKA 146
Query: 312 AHQRLGSLLVRLGQVENARR 331
L + ++ ++ +
Sbjct: 147 IQAELLKVKQKIKAQKDKEK 166
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Score = 41.6 bits (96), Expect = 7e-05
Identities = 32/173 (18%), Positives = 56/173 (32%), Gaps = 19/173 (10%)
Query: 403 EDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQ 462
EDA+ L ++ KI L + +E A+ K +
Sbjct: 11 EDADVDLKDVDKI---------------LLISEDLKNIGNTFFKSQNWEMAIKKYTKVLR 55
Query: 463 IDPRNVEVAVLLNNVKL----VARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYC 518
+ A + KL ++ G K + A + E L DPSN+
Sbjct: 56 YVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALY 115
Query: 519 NRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDF 571
RA W L ++++++ D +A I P K++ D +
Sbjct: 116 RRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKAA 168
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Score = 38.1 bits (87), Expect = 0.001
Identities = 9/52 (17%), Positives = 18/52 (34%)
Query: 247 RMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKE 298
R + +AL+ KA +AP + A ++ + + K
Sbjct: 116 RRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKA 167
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Score = 54.4 bits (129), Expect = 1e-08
Identities = 38/231 (16%), Positives = 72/231 (31%), Gaps = 24/231 (10%)
Query: 241 DAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECE 300
A+ L G G A + + +A+++ P + LT G A + +
Sbjct: 36 RAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFD 95
Query: 301 EAVRLDPNYWRAHQRLGSLLVRLGQVENARRHL--CLSGQQADPTEVHRLQVVEKHLSKC 358
+ LDP Y AH G L G+ + A+ L DP L + E+ L +
Sbjct: 96 SVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEK 155
Query: 359 TDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPS 418
+ + + +S +E ++ ++ +
Sbjct: 156 QAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQ--------TLMERLKADATDNTSLAEH 207
Query: 419 TVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVE 469
LSE F + ++LG ++A + A + N
Sbjct: 208 ------------LSETN--FYLGKYYLSLGDLDSATALFKLAVANNVHNFV 244
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Score = 53.7 bits (127), Expect = 2e-08
Identities = 13/73 (17%), Positives = 22/73 (30%)
Query: 253 YRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRA 312
+ + SLA + LG + A + AV + + +
Sbjct: 186 SEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVE 245
Query: 313 HQRLGSLLVRLGQ 325
H+ L LGQ
Sbjct: 246 HRYALLELSLLGQ 258
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Score = 53.3 bits (126), Expect = 3e-08
Identities = 35/274 (12%), Positives = 63/274 (22%), Gaps = 36/274 (13%)
Query: 260 EALSMYDKAISLA----PRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQR 315
L+ ++ ++ A R LG A + +A+ + P+
Sbjct: 17 VILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNY 76
Query: 316 LGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGD 375
LG L + G + A + L D D + ++
Sbjct: 77 LGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD-- 134
Query: 376 AAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAY 435
P S+ A KL + + E + K + + F+
Sbjct: 135 ------DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQ 188
Query: 436 TFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSER 495
E A + E L G
Sbjct: 189 ------------TLMERLKADATDNTSLAEHLSETNFYL------------GKYYLSLGD 224
Query: 496 FTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQ 529
A + + + N V + LGQ
Sbjct: 225 LDSATALFKLAVANNVHNFVEHRYALLELSLLGQ 258
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Score = 47.5 bits (111), Expect = 2e-06
Identities = 32/280 (11%), Positives = 64/280 (22%), Gaps = 44/280 (15%)
Query: 283 AAALTGLGRIGEAVKECEEAVR----LDPNYWRAHQRLGSLLVRLGQVENARRHL--CLS 336
A L + + E+ + D + G L LG AR L+
Sbjct: 6 AVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALA 65
Query: 337 GQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEAL 396
+ P + L + A + D L + R AL
Sbjct: 66 IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY----------NYAHLNRGIAL 115
Query: 397 LKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTA 456
+ + A+ L + +P+ + + E L +
Sbjct: 116 YYGGRDKLAQDDLLAFYQDDPN--------------DPFRSLWLYLAEQKLDEKQAKEVL 161
Query: 457 AEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVL 516
+ + D ++ + + S
Sbjct: 162 KQHFEKSDK----------EQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSET 211
Query: 517 YCNRAACWFKLGQWERSVEDSNQALLIQPN----YTKALL 552
+ LG + + A+ + + ALL
Sbjct: 212 NFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALL 251
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Score = 42.5 bits (98), Expect = 8e-05
Identities = 32/167 (19%), Positives = 57/167 (34%), Gaps = 15/167 (8%)
Query: 442 QIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQ 501
Q E+ L R E + + + E A LL RG A
Sbjct: 14 QQEVILARMEQILASRALT------DDERAQLLYE---------RGVLYDSLGLRALARN 58
Query: 502 AYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKL 561
+ + L P ++ + G ++ + E + L + P Y A L R +
Sbjct: 59 DFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYG 118
Query: 562 EKWADAVRDFEVLRRELPDDNEIAESLFHAQVSLKKSRGEEVYNMKF 608
+ A D ++ P+D + L+ A+ L + + +EV F
Sbjct: 119 GRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 165
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Score = 39.0 bits (89), Expect = 0.001
Identities = 11/55 (20%), Positives = 20/55 (36%), Gaps = 5/55 (9%)
Query: 241 DAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNA-AFRSNRAAALTGLGRIGE 294
+E +G G A +++ A++ N R AL L +G+
Sbjct: 208 LSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHR----YALLELSLLGQ 258
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.9 bits (126), Expect = 1e-08
Identities = 19/163 (11%), Positives = 44/163 (26%), Gaps = 18/163 (11%)
Query: 397 LKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTA 456
+ +D + +L ++ + F + L A A
Sbjct: 13 VLAADKKDWKGALDAFSAVQDPH--------------SRICFNIGCMYTILKNMTEAEKA 58
Query: 457 AEKAGQIDPRNVEVAVLLNNVKLVAR----ARARGNDLFKSERFTEACQAYGEGLRFDPS 512
++ D + A + R + GL+F
Sbjct: 59 FTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLF 118
Query: 513 NSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRA 555
+ N A + K +W+++ E A ++ + + +A
Sbjct: 119 ACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKA 161
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.5 bits (125), Expect = 2e-08
Identities = 30/233 (12%), Positives = 66/233 (28%), Gaps = 55/233 (23%)
Query: 241 DAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECE 300
+A L G K + AL + ++ N T L + EA K
Sbjct: 4 EAISLWNEGVLAADKKDWKGALDAFSAVQ---DPHSRICFNIGCMYTILKNMTEAEKAFT 60
Query: 301 EAVRLDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTD 360
++ D + A+ + G L + + + A ++ +++ L +
Sbjct: 61 RSINRDKHLAVAYFQRGMLYYQTEKYDLA------------------IKDLKEALIQLRG 102
Query: 361 ARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTV 420
+ + L+ F+ ++ K + + AE L+ ++
Sbjct: 103 NQLIDYKILGLQF--------KLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS--- 151
Query: 421 SSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVL 473
E + + A+ K +P + V L
Sbjct: 152 -----------------------EPRHSKIDKAMECVWKQKLYEPVVIPVGRL 181
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.0 bits (121), Expect = 7e-08
Identities = 20/148 (13%), Positives = 47/148 (31%), Gaps = 15/148 (10%)
Query: 486 RGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQP 545
G + + A A+ +S + N + L + + +++
Sbjct: 11 EGVLAADKKDWKGALDAF---SAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK 67
Query: 546 NYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAESLFHAQVSLKKSRGEEVYN 605
+ A +R + EK+ A++D + +L + I + + L+
Sbjct: 68 HLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLID----YKILGLQFKLFACEVL 123
Query: 606 MKFG------GEVEEVSSLEQFRAAVSL 627
E ++ + EQ A S+
Sbjct: 124 YNIAFMYAKKEEWKK--AEEQLALATSM 149
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.8 bits (92), Expect = 4e-04
Identities = 11/105 (10%), Positives = 26/105 (24%), Gaps = 18/105 (17%)
Query: 237 ICGGDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAA----------------FRS 280
A + G Y+ + A+ +A+ N
Sbjct: 65 RDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLY 124
Query: 281 NRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVRLGQ 325
N A +A ++ A + H ++ + + +
Sbjct: 125 NIAFMYAKKEEWKKAEEQLALATSMKSEP--RHSKIDKAMECVWK 167
|
| >d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]} Length = 112 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Chlamydomonas reinhardtii [TaxId: 3055]
Score = 50.6 bits (120), Expect = 2e-08
Identities = 36/110 (32%), Positives = 55/110 (50%), Gaps = 5/110 (4%)
Query: 609 GGEVEEVSSLEQFRAAVSLPGVS----VVHFKSASNLHCKQISPYVETLCGRYPS-INFL 663
GG V + S + A ++ VV F + CK I+P ETL Y + FL
Sbjct: 1 GGSVIVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFL 60
Query: 664 KVDIDESPGVAHAENVRIVPTFKIYKNGSRMKEIVCPSRDMLEHSVRHYS 713
KVD+D VA A + +PTF +YK+G + ++V S+D L+ V ++
Sbjct: 61 KVDVDAVAAVAEAAGITAMPTFHVYKDGVKADDLVGASQDKLKALVAKHA 110
|
| >d1woua_ c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxin containing protein Txnl5) {Human (Homo sapiens) [TaxId: 9606]} Length = 119 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Txnl5-like domain: Putative 42-9-9 protein (thioredoxin containing protein Txnl5) species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.6 bits (120), Expect = 2e-08
Identities = 23/110 (20%), Positives = 35/110 (31%), Gaps = 17/110 (15%)
Query: 614 EVSSLEQFRAAVS-LPGVSVVHFKSASNL--------HCKQISPYVETLCGRYPS-INFL 663
VS E+F AV G ++ + + S C Q P V F+
Sbjct: 5 SVSGFEEFHRAVEQHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISEGCVFI 64
Query: 664 KVDIDESPGVAHA-------ENVRIVPTFKIYKNGSRMKEIVCPSRDMLE 706
+ E P V VPT Y ++ E C +++E
Sbjct: 65 YCQVGEKPYWKDPNNDFRKNLKVTAVPTLLKYGTPQKLVESECLQANLVE 114
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 170 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.8 bits (120), Expect = 5e-08
Identities = 28/141 (19%), Positives = 53/141 (37%), Gaps = 15/141 (10%)
Query: 477 VKLVARARARGNDLFKSERFTEACQAY---------------GEGLRFDPSNSVLYCNRA 521
++ + RG FK ++ +A Y E + + N A
Sbjct: 10 LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLA 69
Query: 522 ACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDD 581
C KL + ++E N+AL + N K L RR ++ + + A DF+ + + P++
Sbjct: 70 MCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNN 129
Query: 582 NEIAESLFHAQVSLKKSRGEE 602
L Q +++ E
Sbjct: 130 KAAKTQLAVCQQRIRRQLARE 150
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 170 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.0 bits (110), Expect = 1e-06
Identities = 18/142 (12%), Positives = 35/142 (24%), Gaps = 49/142 (34%)
Query: 242 AEELKRMGNELYRKGCFGEALSMYDKA---------------ISLAPRNAAFRSNRAAA- 285
+ +K G +++G + +AL Y K A N A
Sbjct: 13 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCH 72
Query: 286 ---------------------------------LTGLGRIGEAVKECEEAVRLDPNYWRA 312
+ A + ++ ++L PN A
Sbjct: 73 LKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAA 132
Query: 313 HQRLGSLLVRLGQVENARRHLC 334
+L R+ + + L
Sbjct: 133 KTQLAVCQQRIRRQLAREKKLY 154
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 170 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.8 bits (94), Expect = 1e-04
Identities = 22/146 (15%), Positives = 49/146 (33%), Gaps = 5/146 (3%)
Query: 430 MLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNV----EVAVLLNNVKLVARARA 485
L ++ R + G+++ A+ +K E A ++L +
Sbjct: 9 KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLN- 67
Query: 486 RGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQP 545
K + F+ A ++ + L D +N R + +E + D + L + P
Sbjct: 68 LAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYP 127
Query: 546 NYTKALLRRAASNSKLEKWADAVRDF 571
N A + A ++ + +
Sbjct: 128 NNKAAKTQLAVCQQRIRRQLAREKKL 153
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 179 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 50.6 bits (120), Expect = 7e-08
Identities = 25/169 (14%), Positives = 41/169 (24%), Gaps = 21/169 (12%)
Query: 243 EELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEA 302
K G G F +A A+ + A
Sbjct: 12 VAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFV------------EPFA 59
Query: 303 VRLDPNYWRAHQRLGSLLVRLGQVENARRHL--CLSGQQADPTEVHRLQVVEKHLSKCTD 360
L + AH + G+ L +L + +D
Sbjct: 60 TALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSD 119
Query: 361 A-RKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESS 408
A K+ L + G D P L E +L+ L+ +S+
Sbjct: 120 ALGAYRRVKTTLAD-----DLGIDPGPTLRA-LNERILRQQPLDAKKSA 162
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 179 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 50.3 bits (119), Expect = 1e-07
Identities = 16/142 (11%), Positives = 34/142 (23%), Gaps = 24/142 (16%)
Query: 440 RAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEA 499
A GRFE A A + V + +
Sbjct: 17 AGVHAAAAGRFEQASRHLSAALREWRGPVL------------------------DDLRDF 52
Query: 500 CQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNS 559
+ + +A G+ + + P + +
Sbjct: 53 QFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYY 112
Query: 560 KLEKWADAVRDFEVLRRELPDD 581
++ +DA+ + ++ L DD
Sbjct: 113 LSDRQSDALGAYRRVKTTLADD 134
|
| >d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE {Salmonella typhimurium [TaxId: 90371]} Length = 119 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: HyaE-like domain: Hydrogenase-1 operon protein HyaE species: Salmonella typhimurium [TaxId: 90371]
Score = 49.2 bits (117), Expect = 7e-08
Identities = 14/92 (15%), Positives = 31/92 (33%), Gaps = 3/92 (3%)
Query: 609 GGEVEEVSSLEQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYP--SINFLKVD 666
G + E S+++ + GV ++ + L +P D
Sbjct: 12 GWQPVEASTVDDWIKR-VGDGVILLSSDPRRTPEVSDNPVMIAELLREFPQFDWQVAVAD 70
Query: 667 IDESPGVAHAENVRIVPTFKIYKNGSRMKEIV 698
+++S + NVR P ++ +G +
Sbjct: 71 LEQSEAIGDRFNVRRFPATLVFTDGKLRGALS 102
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.3 bits (117), Expect = 8e-08
Identities = 7/118 (5%), Positives = 30/118 (25%), Gaps = 7/118 (5%)
Query: 446 ALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGE 505
++ + + + + +
Sbjct: 11 SVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRT------RYNDDIRKGIVLLEELLP 64
Query: 506 GLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEK 563
+ ++ A ++L ++E++++ L +P +A + ++K
Sbjct: 65 KGSKEEQRDYVF-YLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMKK 121
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.0 bits (85), Expect = 0.001
Identities = 16/115 (13%), Positives = 37/115 (32%), Gaps = 7/115 (6%)
Query: 250 NELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTG---LGRIGEAVKECEEAVRLD 306
NEL + + + + + + A L I + + EE +
Sbjct: 7 NELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG 66
Query: 307 PNYWR--AHQRLGSLLVRLGQVENARRHL--CLSGQQADPTEVHRLQVVEKHLSK 357
+ L RL + E A +++ L + + ++++K + K
Sbjct: 67 SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMKK 121
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.6 bits (84), Expect = 0.002
Identities = 8/108 (7%), Positives = 28/108 (25%), Gaps = 13/108 (12%)
Query: 220 SLAVGPENANVNRNRGGICGGDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRN--AA 277
A G + + + + + ++ + +
Sbjct: 25 EKAAGSVSKSTQFEYA-----------WCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRD 73
Query: 278 FRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVRLGQ 325
+ A L +A+K ++ +P +A + + + +
Sbjct: 74 YVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMKK 121
|
| >d1xfla_ c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 114 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 49.1 bits (116), Expect = 9e-08
Identities = 29/107 (27%), Positives = 54/107 (50%), Gaps = 4/107 (3%)
Query: 610 GEVEEVSSLEQF----RAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKV 665
G+V ++E + + A + VV F ++ C+ I+P+ L + P++ FLKV
Sbjct: 6 GQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPNVLFLKV 65
Query: 666 DIDESPGVAHAENVRIVPTFKIYKNGSRMKEIVCPSRDMLEHSVRHY 712
D DE VA ++ +PTF K G + ++V +D L+ ++ +
Sbjct: 66 DTDELKSVASDWAIQAMPTFMFLKEGKILDKVVGAKKDELQSTIAKH 112
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Length = 95 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.7 bits (110), Expect = 3e-07
Identities = 14/91 (15%), Positives = 34/91 (37%), Gaps = 7/91 (7%)
Query: 242 AEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLG-------RIGE 294
AE+ +G Y + + ++A+ ++ + L L + +
Sbjct: 5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDK 64
Query: 295 AVKECEEAVRLDPNYWRAHQRLGSLLVRLGQ 325
A+ ++ + LDP + RA+ L + +
Sbjct: 65 ALLLTKKLLELDPEHQRANGNLKYFEYIMAK 95
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Length = 95 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.8 bits (92), Expect = 8e-05
Identities = 8/84 (9%), Positives = 25/84 (29%), Gaps = 7/84 (8%)
Query: 487 GNDLFKSERFTEACQAYGEGLR-------FDPSNSVLYCNRAACWFKLGQWERSVEDSNQ 539
G + + + LR + + ++ G ++++ + +
Sbjct: 12 GKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKK 71
Query: 540 ALLIQPNYTKALLRRAASNSKLEK 563
L + P + +A + K
Sbjct: 72 LLELDPEHQRANGNLKYFEYIMAK 95
|
| >d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]} Length = 105 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]
Score = 44.4 bits (104), Expect = 2e-06
Identities = 17/81 (20%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Query: 619 EQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRY-PSINFLKVDIDESPGVAHAE 677
F+ A+ +V F +A C+ ++P +E + + K+++DE+P
Sbjct: 8 ANFQQAIQGDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETTSQF 67
Query: 678 NVRIVPTFKIYKNGSRMKEIV 698
+ +PT ++K G +K+++
Sbjct: 68 GIMSIPTLILFKGGEPVKQLI 88
|
| >d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]} Length = 112 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]
Score = 41.3 bits (96), Expect = 3e-05
Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 4/92 (4%)
Query: 610 GEVEEVSSLEQFRAAVSLPG--VSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDI 667
G+V EV+ + F V G V+ + CK ++P E L Y + FLK+D
Sbjct: 6 GKVTEVNK-DTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLDVIFLKLDC 64
Query: 668 DE-SPGVAHAENVRIVPTFKIYKNGSRMKEIV 698
++ + +A +R+VPTFKI K S + E+
Sbjct: 65 NQENKTLAKELGIRVVPTFKILKENSVVGEVT 96
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} Length = 156 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Score = 42.4 bits (98), Expect = 3e-05
Identities = 14/87 (16%), Positives = 26/87 (29%), Gaps = 12/87 (13%)
Query: 240 GDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFR------------SNRAAALT 287
A G + EA + +A+ ++ + A AL
Sbjct: 7 VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALA 66
Query: 288 GLGRIGEAVKECEEAVRLDPNYWRAHQ 314
GL EA+ ++A+ +Q
Sbjct: 67 GLRSFDEALHSADKALHYFNRRGELNQ 93
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} Length = 156 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Score = 42.0 bits (97), Expect = 5e-05
Identities = 18/144 (12%), Positives = 38/144 (26%), Gaps = 11/144 (7%)
Query: 431 LSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDL 490
+ AY AQ ++ G ++ A +A +I + L
Sbjct: 6 VVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEAL 65
Query: 491 FKSERFTEACQAYGEGLRFDPSNSVLYC-----------NRAACWFKLGQWERSVEDSNQ 539
F EA + + L + L +RA LG+ ++ + +
Sbjct: 66 AGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKK 125
Query: 540 ALLIQPNYTKALLRRAASNSKLEK 563
+ + +
Sbjct: 126 VVEMIEERKGETPGKERMMEVAID 149
|
| >d2b5ea1 c.47.1.2 (A:365-504) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 140 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.8 bits (92), Expect = 2e-04
Identities = 21/105 (20%), Positives = 44/105 (41%), Gaps = 7/105 (6%)
Query: 597 KSRGEEVYNMKFGGEVEEVSSLEQFRAAVSLPGVSV-VHFKSASNLHCKQISPYVETLCG 655
KS +E++ + V ++ + V+ P V V + + HCK+++P + L
Sbjct: 2 KS--QEIFENQ-DSSVFQLVG-KNHDEIVNDPKKDVLVLYYAPWCGHCKRLAPTYQELAD 57
Query: 656 RYP--SINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKEIV 698
Y + + L +D + + PT +Y G + + +V
Sbjct: 58 TYANATSDVLIAKLDHTENDVRGVVIEGYPTIVLYPGGKKSESVV 102
|
| >d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]} Length = 120 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.7 bits (89), Expect = 4e-04
Identities = 22/92 (23%), Positives = 34/92 (36%), Gaps = 5/92 (5%)
Query: 611 EVEEVSSLEQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYPSIN----FLKVD 666
V + F A++ +V F + HCK ++P G+ + KVD
Sbjct: 8 HVLVLRK-SNFAEALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVD 66
Query: 667 IDESPGVAHAENVRIVPTFKIYKNGSRMKEIV 698
E +A VR PT K ++NG
Sbjct: 67 ATEESDLAQQYGVRGYPTIKFFRNGDTASPKE 98
|
| >d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 85 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: MTH807, thioredoxin/glutaredoxin-like protein species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Score = 36.6 bits (84), Expect = 0.001
Identities = 12/63 (19%), Positives = 20/63 (31%), Gaps = 1/63 (1%)
Query: 630 VSVVHFKSASNLHCKQISPYVETLCGRYPSINF-LKVDIDESPGVAHAENVRIVPTFKIY 688
V++ F S + +C V+ + K+DI A + VP I
Sbjct: 3 VNIEVFTSPTCPYCPMAIEVVDEAKKEFGDKIDVEKIDIMVDREKAIEYGLMAVPAIAIN 62
Query: 689 KNG 691
Sbjct: 63 GVV 65
|
| >d2b5ea4 c.47.1.2 (A:23-141) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 119 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 37.2 bits (85), Expect = 0.001
Identities = 17/91 (18%), Positives = 36/91 (39%), Gaps = 3/91 (3%)
Query: 610 GEVEEVSSLEQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRY--PSINFLKVDI 667
V ++++ + F + + + F + HCK ++P +I ++D
Sbjct: 10 SAVVKLAT-DSFNEYIQSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKNITLAQIDC 68
Query: 668 DESPGVAHAENVRIVPTFKIYKNGSRMKEIV 698
E+ + N+ P+ KI+KN I
Sbjct: 69 TENQDLCMEHNIPGFPSLKIFKNSDVNNSID 99
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 714 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 100.0 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 100.0 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.96 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.95 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.91 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.89 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.88 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.84 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.84 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.82 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.82 | |
| d1syra_ | 103 | Thioredoxin {Malarial parasite (Plasmodium falcipa | 99.8 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.79 | |
| d1r26a_ | 113 | Thioredoxin {Trypanosoma brucei [TaxId: 5691]} | 99.79 | |
| d1gh2a_ | 107 | Thioredoxin-like protein, N-terminal domain {Human | 99.78 | |
| d2ifqa1 | 105 | Thioredoxin {Human (Homo sapiens) [TaxId: 9606]} | 99.78 | |
| d1xfla_ | 114 | Thioredoxin {Thale cress (Arabidopsis thaliana) [T | 99.77 | |
| d1ep7a_ | 112 | Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305 | 99.76 | |
| d1ti3a_ | 113 | Thioredoxin {European aspen (Populus tremula), thi | 99.75 | |
| d1nw2a_ | 105 | Thioredoxin {Alicyclobacillus acidocaldarius, form | 99.74 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.72 | |
| d1thxa_ | 108 | Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]} | 99.72 | |
| d1xwaa_ | 111 | Thioredoxin {Fruit fly (Drosophila melanogaster) [ | 99.71 | |
| d1dbya_ | 107 | Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305 | 99.71 | |
| d2trxa_ | 108 | Thioredoxin {Escherichia coli [TaxId: 562]} | 99.71 | |
| d1f9ma_ | 112 | Thioredoxin {Spinach (Spinacia oleracea), thioredo | 99.7 | |
| d1fb6a_ | 104 | Thioredoxin {Spinach (Spinacia oleracea), thioredo | 99.7 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 99.68 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 99.66 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 99.66 | |
| d1qgva_ | 137 | spliceosomal protein U5-15Kd {Human (Homo sapiens) | 99.63 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.62 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.62 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 99.62 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 99.61 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 99.61 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 99.61 | |
| d2hfda1 | 132 | Hydrogenase-1 operon protein HyaE {Escherichia col | 99.61 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 99.59 | |
| d2es7a1 | 119 | Hydrogenase-1 operon protein HyaE {Salmonella typh | 99.59 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 99.59 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.59 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 99.58 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 99.57 | |
| d1fo5a_ | 85 | MJ0307, thioredoxin/glutaredoxin-like protein {Arc | 99.56 | |
| d1a8la2 | 107 | Protein disulfide isomerase, PDI {Archaeon Pyrococ | 99.56 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 99.55 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 99.54 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.54 | |
| d2trcp_ | 217 | Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.54 | |
| d2b5ea4 | 119 | Protein disulfide isomerase, PDI {Baker's yeast (S | 99.53 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 99.53 | |
| d1meka_ | 120 | Protein disulfide isomerase, PDI {Human (Homo sapi | 99.52 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 99.52 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 99.51 | |
| d1woua_ | 119 | Putative 42-9-9 protein (thioredoxin containing pr | 99.49 | |
| d1nhoa_ | 85 | MTH807, thioredoxin/glutaredoxin-like protein {Arc | 99.49 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.47 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 99.46 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.45 | |
| d1zmaa1 | 115 | Bacterocin transport accessory protein Bta {Strept | 99.45 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 99.45 | |
| d1hyua4 | 96 | Alkyl hydroperoxide reductase subunit F (AhpF), N- | 99.44 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 99.44 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 99.43 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 99.43 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 99.41 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 99.4 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.39 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 99.38 | |
| d2djja1 | 116 | Protein disulfide isomerase, PDI {Fungi (Humicola | 99.31 | |
| d1a8ya1 | 124 | Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax | 99.29 | |
| d2b5ea1 | 140 | Protein disulfide isomerase, PDI {Baker's yeast (S | 99.28 | |
| d2fwha1 | 117 | Thiol:disulfide interchange protein DsbD, C-termin | 99.26 | |
| d2c0ga2 | 122 | Windbeutel, N-terminal domain {Fruit fly (Drosophi | 99.21 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 99.18 | |
| d1z5ye1 | 136 | Thioredoxin-like protein CcmG (CycY, DsbE) {Escher | 99.18 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 99.14 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 99.12 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 99.12 | |
| d1zzoa1 | 134 | Lipoprotein DsbF {Mycobacterium tuberculosis [TaxI | 99.07 | |
| d1wjka_ | 100 | Thioredoxin-like structure containing protein C330 | 99.02 | |
| d1knga_ | 144 | Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyr | 99.01 | |
| d2fy6a1 | 143 | Peptide methionine sulfoxide reductase MsrA/MsrB, | 99.01 | |
| d2b5xa1 | 143 | thiol:disulfide oxidoreductase YkuV {Bacillus subt | 99.0 | |
| d1lu4a_ | 134 | Soluble secreted antigen MPT53 {Mycobacterium tube | 98.98 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 98.97 | |
| d1g7ea_ | 122 | Endoplasmic reticulum protein ERP29, N-terminal do | 98.96 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 98.89 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.87 | |
| d1st9a_ | 137 | Thiol-disulfide oxidoreductase ResA {Bacillus subt | 98.77 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.74 | |
| d1i5ga_ | 144 | Tryparedoxin II {Crithidia fasciculata [TaxId: 565 | 98.74 | |
| d1o73a_ | 144 | Tryparedoxin I {Trypanosoma brucei brucei [TaxId: | 98.67 | |
| d1sena_ | 135 | Thioredoxin-like protein p19, TLP19 {Human (Homo s | 98.57 | |
| d2cvba1 | 187 | Probable thiol-disulfide isomerase/thioredoxin TTH | 98.56 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 98.53 | |
| d2dlxa1 | 147 | UBX domain-containing protein 7 {Human (Homo sapie | 98.49 | |
| d1o8xa_ | 144 | Tryparedoxin I {Crithidia fasciculata [TaxId: 5656 | 98.48 | |
| d1z6na1 | 166 | Hypothetical protein PA1234 {Pseudomonas aeruginos | 98.47 | |
| d1jfua_ | 176 | Membrane-anchored thioredoxin-like protein TlpA, s | 98.43 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 98.17 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 98.16 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 97.85 | |
| d1eeja1 | 156 | Disulfide bond isomerase, DsbC, C-terminal domain | 97.51 | |
| d2cx4a1 | 160 | Bacterioferritin comigratory protein {Archaeon Aer | 97.48 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.46 | |
| d1t3ba1 | 150 | Disulfide bond isomerase, DsbC, C-terminal domain | 97.42 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 97.34 | |
| d2bmxa1 | 169 | Alkyl hydroperoxide reductase AhpC {Mycobacterium | 97.25 | |
| d1e2ya_ | 167 | Tryparedoxin peroxidase (thioredoxin peroxidase ho | 97.21 | |
| d2a4va1 | 156 | Peroxiredoxin dot5 {Baker's yeast (Saccharomyces c | 97.2 | |
| d1beda_ | 181 | Disulfide-bond formation facilitator (DsbA) {Vibri | 97.19 | |
| d1r7ha_ | 74 | Glutaredoxin-like NRDH-redoxin {Corynebacterium am | 97.08 | |
| d1v58a1 | 169 | Thiol:disulfide interchange protein DsbG, C-termin | 97.08 | |
| d2f8aa1 | 184 | Glutathione peroxidase {Human (Homo sapiens) [TaxI | 97.01 | |
| d1ttza_ | 75 | Hypothetical protein XCC2852 {Xanthomonas campestr | 96.99 | |
| d1we0a1 | 166 | Alkyl hydroperoxide reductase AhpC {Amphibacillus | 96.97 | |
| d1xvwa1 | 153 | Putative peroxiredoxin Rv2238c/MT2298 {Mycobacteri | 96.89 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 96.86 | |
| d1h75a_ | 76 | Glutaredoxin-like NRDH-redoxin {Escherichia coli [ | 96.78 | |
| d1z6ma1 | 172 | Hypothetical protein EF0770 {Enterococcus faecalis | 96.75 | |
| d1egoa_ | 85 | Glutaredoxin (Grx, thioltransferase) {Escherichia | 96.73 | |
| d1qxha_ | 164 | Thiol peroxidase Tpx {Escherichia coli [TaxId: 562 | 96.64 | |
| d1a8la1 | 119 | Protein disulfide isomerase, PDI {Archaeon Pyrococ | 96.61 | |
| d1zofa1 | 170 | Thioredoxin reductase TsaA {Helicobacter pylori [T | 96.43 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 96.37 | |
| d2zcta1 | 237 | Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]} | 96.34 | |
| d1xzoa1 | 172 | Thioredoxin-like protein Sco1 (YpmQ), soluble doma | 96.33 | |
| d1iloa_ | 77 | MTH985, a thioredoxin {Archaeon Methanobacterium t | 96.16 | |
| d1wp0a1 | 160 | Thioredoxin-like protein Sco1 (YpmQ), soluble doma | 96.09 | |
| d1psqa_ | 163 | Probable thiol peroxidase PsaD {Streptococcus pneu | 96.02 | |
| d1zyea1 | 158 | Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [ | 95.98 | |
| d1uula_ | 194 | Tryparedoxin peroxidase (thioredoxin peroxidase ho | 95.86 | |
| d1ktea_ | 105 | Glutaredoxin (Grx, thioltransferase) {Pig (Sus scr | 95.5 | |
| d1xvqa_ | 166 | Thiol peroxidase Tpx {Mycobacterium tuberculosis [ | 95.27 | |
| d1fvka_ | 188 | Disulfide-bond formation facilitator (DsbA) {Esche | 95.03 | |
| d2djka1 | 133 | Protein disulfide isomerase, PDI {Fungi (Humicola | 94.98 | |
| d1fova_ | 82 | Glutaredoxin (Grx, thioltransferase) {Escherichia | 94.67 | |
| d1n8ja_ | 186 | Alkyl hydroperoxide reductase AhpC {Salmonella typ | 94.58 | |
| d1nm3a1 | 74 | C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus | 94.14 | |
| d2h01a1 | 170 | Thioredoxin peroxidase 2 (thioredoxin peroxidase B | 94.06 | |
| d1q98a_ | 164 | Thiol peroxidase Tpx {Haemophilus influenzae [TaxI | 93.97 | |
| d2b5ea3 | 125 | Protein disulfide isomerase, PDI {Baker's yeast (S | 93.52 | |
| d1qmva_ | 197 | Thioredoxin peroxidase 2 (thioredoxin peroxidase B | 92.72 | |
| d1prxa_ | 220 | 1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId: | 92.41 | |
| d2b7ka1 | 169 | Thioredoxin-like protein Sco1 (YpmQ), soluble doma | 92.33 | |
| d2o02a1 | 230 | zeta isoform {Cow (Bos taurus) [TaxId: 9913]} | 91.43 | |
| d1bjxa_ | 110 | Protein disulfide isomerase, PDI {Human (Homo sapi | 91.01 | |
| d2axoa1 | 225 | Hypothetical protein Atu2684 {Agrobacterium tumefa | 90.88 | |
| d1wika_ | 109 | Thioredoxin-like protein 2 {Mouse (Mus musculus) [ | 85.4 | |
| d1a8ya2 | 102 | Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax | 84.23 | |
| d1o9da_ | 236 | 14-3-3-like protein C {Common tobacco (Nicotiana t | 83.21 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.8e-35 Score=312.50 Aligned_cols=324 Identities=16% Similarity=0.125 Sum_probs=295.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Q 005108 246 KRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVRLGQ 325 (714)
Q Consensus 246 ~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~ 325 (714)
+.+|..+++.|+|++|++.|+++++.+|+++.++..+|.+|..+|++++|+..|+++++++|++..+|..+|.+|..+|+
T Consensus 3 l~la~~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~ 82 (388)
T d1w3ba_ 3 MELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp CTHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhcc
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCC--ChHHHHHHH------------------------------------------------------
Q 005108 326 VENARRHLCLSGQQA--DPTEVHRLQ------------------------------------------------------ 349 (714)
Q Consensus 326 ~~~A~~~~~~al~~~--~~~~~~~l~------------------------------------------------------ 349 (714)
+++|+..+..+.... .........
T Consensus 83 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (388)
T d1w3ba_ 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhh
Confidence 999999998876621 111110000
Q ss_pred -----HHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchh
Q 005108 350 -----VVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQ 424 (714)
Q Consensus 350 -----~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 424 (714)
....+..++..+...+++++|+..++++++.+|+. ...+..+|.++...|++++|+..++++...++..
T Consensus 163 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----- 236 (388)
T d1w3ba_ 163 ETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNF-LDAYINLGNVLKEARIFDRAVAAYLRALSLSPNH----- 236 (388)
T ss_dssp HHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTC-----
T ss_pred ccCcchhHHHHhhcccccccCcHHHHHHHHHHHHHhCccc-HHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhH-----
Confidence 02345556788889999999999999999999984 6677779999999999999999999999999988
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHH
Q 005108 425 TRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYG 504 (714)
Q Consensus 425 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~ 504 (714)
...+..+|.++...|++++|+..|+++++++|++..++..+ |.++...|++++|+..|+
T Consensus 237 ---------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l------------~~~~~~~~~~~~A~~~~~ 295 (388)
T d1w3ba_ 237 ---------AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNL------------ANALKEKGSVAEAEDCYN 295 (388)
T ss_dssp ---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHH------------HHHHHHHSCHHHHHHHHH
T ss_pred ---------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH------------HHHHHHcCCHHHHHHHHH
Confidence 78899999999999999999999999999999999998866 999999999999999999
Q ss_pred HhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHH
Q 005108 505 EGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEI 584 (714)
Q Consensus 505 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~ 584 (714)
+++...|.+...+..++.++...|++++|++.|+++++++|++..+++.+|.+|.++|++++|+++|+++++++|++.++
T Consensus 296 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a 375 (388)
T d1w3ba_ 296 TALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADA 375 (388)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHH
T ss_pred hhhccCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhh
Q 005108 585 AESLFHAQVSLK 596 (714)
Q Consensus 585 ~~~L~~~~~~l~ 596 (714)
+..|+.++..++
T Consensus 376 ~~~lg~~~~~~~ 387 (388)
T d1w3ba_ 376 YSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHHcC
Confidence 999998887654
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=5.2e-31 Score=278.00 Aligned_cols=300 Identities=15% Similarity=0.122 Sum_probs=272.3
Q ss_pred hhhhhcCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC--
Q 005108 230 VNRNRGGICGGDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDP-- 307 (714)
Q Consensus 230 ~~~~~~~~~p~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-- 307 (714)
.+......+|+++.+++.+|.+++..|++++|+.+|+++++.+|+++.+|..+|.+|..+|++++|+..+..+++.++
T Consensus 21 ~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 100 (388)
T d1w3ba_ 21 HCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDF 100 (388)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhcccccccccccccccccccc
Confidence 334444578999999999999999999999999999999999999999999999999999999999999887766543
Q ss_pred ------------------------------------------------------------------CcHHHHHHHHHHHH
Q 005108 308 ------------------------------------------------------------------NYWRAHQRLGSLLV 321 (714)
Q Consensus 308 ------------------------------------------------------------------~~~~a~~~la~~~~ 321 (714)
++..++..+|..+.
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 180 (388)
T d1w3ba_ 101 IDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFN 180 (388)
T ss_dssp HHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhhccCcchhHHHHhhccccc
Confidence 45567888889999
Q ss_pred HcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 005108 322 RLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQ 401 (714)
Q Consensus 322 ~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~ 401 (714)
..+++++|+..+++++...+.. ...+..++.++...+++++|+..+++++..++.. ...+..+|.++...|+
T Consensus 181 ~~~~~~~A~~~~~~al~~~p~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~ 252 (388)
T d1w3ba_ 181 AQGEIWLAIHHFEKAVTLDPNF-------LDAYINLGNVLKEARIFDRAVAAYLRALSLSPNH-AVVHGNLACVYYEQGL 252 (388)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTC
T ss_pred ccCcHHHHHHHHHHHHHhCccc-------HHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhH-HHHHHHHHHHHHHCCC
Confidence 9999999999999988622111 2356677888999999999999999999998874 5667779999999999
Q ss_pred HHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHH
Q 005108 402 LEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVA 481 (714)
Q Consensus 402 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~ 481 (714)
+++|+..|+++++++|++ ..++..+|.++...|++++|++.+++++...|.+...+..+
T Consensus 253 ~~~A~~~~~~al~~~p~~--------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l------- 311 (388)
T d1w3ba_ 253 IDLAIDTYRRAIELQPHF--------------PDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNL------- 311 (388)
T ss_dssp HHHHHHHHHHHHHTCSSC--------------HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHH-------
T ss_pred HHHHHHHHHHHHHhCCCC--------------HHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHH-------
Confidence 999999999999999998 78999999999999999999999999999999999988766
Q ss_pred HHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 005108 482 RARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKL 561 (714)
Q Consensus 482 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 561 (714)
|.++...|++++|+.+|+++++++|+++.+++++|.+|.++|++++|++.|+++++++|+++.++.++|.+|.++
T Consensus 312 -----~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~ 386 (388)
T d1w3ba_ 312 -----ANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEM 386 (388)
T ss_dssp -----HHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHT
T ss_pred -----HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cc
Q 005108 562 EK 563 (714)
Q Consensus 562 g~ 563 (714)
||
T Consensus 387 ~D 388 (388)
T d1w3ba_ 387 QD 388 (388)
T ss_dssp CC
T ss_pred CC
Confidence 86
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=1.3e-27 Score=246.69 Aligned_cols=257 Identities=15% Similarity=0.111 Sum_probs=172.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 005108 243 EELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVR 322 (714)
Q Consensus 243 ~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~ 322 (714)
...+.+|..++..|++++|+.+|+++++.+|+++.+|..+|.++..+|++++|+..|+++++++|++...|..+|.+|..
T Consensus 20 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 99 (323)
T d1fcha_ 20 PQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTN 99 (323)
T ss_dssp SSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccccccccccccccccc
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 005108 323 LGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQL 402 (714)
Q Consensus 323 ~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~ 402 (714)
+|++++|+..|++++...+......... ..... .. ...........+...+.+
T Consensus 100 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~--~~--------~~~~~~~~~~~~~~~~~~ 152 (323)
T d1fcha_ 100 ESLQRQACEILRDWLRYTPAYAHLVTPA-----------------EEGAG--GA--------GLGPSKRILGSLLSDSLF 152 (323)
T ss_dssp TTCHHHHHHHHHHHHHTSTTTGGGCC------------------------------------------CTTHHHHHHHHH
T ss_pred cccccccccchhhHHHhccchHHHHHhh-----------------hhhhh--hc--------ccccchhhHHHHHHhhHH
Confidence 9999999999988765222111000000 00000 00 000000011223334455
Q ss_pred HHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHH
Q 005108 403 EDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVAR 482 (714)
Q Consensus 403 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~ 482 (714)
.+|+..|.++++++|... .+.++..+|.++...|++++|+..|++++..+|++..+|..+
T Consensus 153 ~~a~~~~~~al~~~p~~~------------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l-------- 212 (323)
T d1fcha_ 153 LEVKELFLAAVRLDPTSI------------DPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKL-------- 212 (323)
T ss_dssp HHHHHHHHHHHHHSTTSC------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH--------
T ss_pred HHHHHHHHHHHHHhhccc------------ccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhh--------
Confidence 566666666666655541 144556666666666666666666666666666666655544
Q ss_pred HHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH
Q 005108 483 ARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKA 550 (714)
Q Consensus 483 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 550 (714)
|.++...|++++|+++|+++++++|+++.+|+++|.+|.++|++++|+..|+++++++|++..+
T Consensus 213 ----g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 276 (323)
T d1fcha_ 213 ----GATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGP 276 (323)
T ss_dssp ----HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC---
T ss_pred ----hhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhh
Confidence 6666666666666666666666666666666666666666666666666666666666655443
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=2.2e-26 Score=237.47 Aligned_cols=256 Identities=18% Similarity=0.080 Sum_probs=200.3
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHH
Q 005108 277 AFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLS 356 (714)
Q Consensus 277 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~ 356 (714)
...+.+|..++..|++++|+..|+++++.+|++..+|..+|.++..+|++++|+..|.+++
T Consensus 20 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al------------------- 80 (323)
T d1fcha_ 20 PQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCL------------------- 80 (323)
T ss_dssp SSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-------------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhh-------------------
Confidence 4467899999999999999999999999999999999999999999999888888775554
Q ss_pred HhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhh-hhhhHH
Q 005108 357 KCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFG-MLSEAY 435 (714)
Q Consensus 357 ~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~-~~~~~~ 435 (714)
+++|+ ....+..+|.+|...|++++|++.+++++...|............ ......
T Consensus 81 ----------------------~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (323)
T d1fcha_ 81 ----------------------ELKPD-NQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLG 137 (323)
T ss_dssp ----------------------HHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC------------
T ss_pred ----------------------ccccc-cccccccccccccccccccccccchhhHHHhccchHHHHHhhhhhhhhcccc
Confidence 44554 244555567777777777777777777766666542111000000 000001
Q ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCH--HHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCC
Q 005108 436 TFFVRAQIEMALGRFENAVTAAEKAGQIDPRNV--EVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSN 513 (714)
Q Consensus 436 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~ 513 (714)
........+...+.+.+|+..|+++++++|+.. .++.. +|.++...|++++|+.+|++++..+|++
T Consensus 138 ~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~------------l~~~~~~~~~~~~A~~~~~~al~~~p~~ 205 (323)
T d1fcha_ 138 PSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCG------------LGVLFNLSGEYDKAVDCFTAALSVRPND 205 (323)
T ss_dssp ---CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHH------------HHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred cchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchh------------hHHHHHHHHHHhhhhccccccccccccc
Confidence 112223345567789999999999999998764 44443 4999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHH
Q 005108 514 SVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAE 586 (714)
Q Consensus 514 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~ 586 (714)
+.+|+.+|.+|..+|++++|++.|+++++++|+++.+++.+|.+|.++|++++|+++|+++++++|++.....
T Consensus 206 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~ 278 (323)
T d1fcha_ 206 YLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRG 278 (323)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC-----
T ss_pred ccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999877543
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.91 E-value=1.9e-24 Score=224.18 Aligned_cols=271 Identities=12% Similarity=0.043 Sum_probs=236.2
Q ss_pred HcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC----------CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 005108 254 RKGC-FGEALSMYDKAISLAPRNAAFRSNRAAALTGLG----------RIGEAVKECEEAVRLDPNYWRAHQRLGSLLVR 322 (714)
Q Consensus 254 ~~g~-~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g----------~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~ 322 (714)
..++ .++|+++++++++.+|++..+|..++.++..++ ++++|+..++++++.+|++..+|+.+|.++..
T Consensus 40 ~~~~~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~ 119 (334)
T d1dcea1 40 QAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSR 119 (334)
T ss_dssp HTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred hcccccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHH
Confidence 4444 589999999999999999999988888766554 47899999999999999999999999998876
Q ss_pred cCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 005108 323 LGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQL 402 (714)
Q Consensus 323 ~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~ 402 (714)
.++ +++++|+..++++++.+|.....++...+.++...+++
T Consensus 120 ~~~---------------------------------------~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 160 (334)
T d1dcea1 120 LPE---------------------------------------PNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAP 160 (334)
T ss_dssp CSS---------------------------------------CCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCH
T ss_pred hcc---------------------------------------ccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhcccc
Confidence 553 34555566667778888877666667788999999999
Q ss_pred HHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHH
Q 005108 403 EDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVAR 482 (714)
Q Consensus 403 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~ 482 (714)
++|+..++++++.+|.+ ..+|+.+|.++..+|++++|+..+++++++.|.+...+
T Consensus 161 ~~Al~~~~~~i~~~p~~--------------~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~----------- 215 (334)
T d1dcea1 161 AEELAFTDSLITRNFSN--------------YSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELV----------- 215 (334)
T ss_dssp HHHHHHHHTTTTTTCCC--------------HHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHH-----------
T ss_pred HHHHHHHHHHHHcCCCC--------------HHHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHHHHHHH-----------
Confidence 99999999999999999 88999999999999999999999988888877654433
Q ss_pred HHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Q 005108 483 ARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLE 562 (714)
Q Consensus 483 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 562 (714)
..+...+.+++|...|.+++..+|.+...+..++.++...+++++|+..+.++++.+|++..+++.+|.++..+|
T Consensus 216 -----~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 290 (334)
T d1dcea1 216 -----QNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLL 290 (334)
T ss_dssp -----HHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGG
T ss_pred -----HHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCC
Confidence 334556777889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005108 563 KWADAVRDFEVLRRELPDDNEIAESLFHAQV 593 (714)
Q Consensus 563 ~~~eA~~~~~~al~~~p~~~~~~~~L~~~~~ 593 (714)
++++|+++|+++++++|.+...+..|.....
T Consensus 291 ~~~eA~~~~~~ai~ldP~~~~y~~~L~~~~~ 321 (334)
T d1dcea1 291 YEKETLQYFSTLKAVDPMRAAYLDDLRSKFL 321 (334)
T ss_dssp GHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCcccHHHHHHHHHHHh
Confidence 9999999999999999999999888865443
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=7.8e-22 Score=201.92 Aligned_cols=207 Identities=13% Similarity=0.083 Sum_probs=149.7
Q ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHhcCCCcHHHHHH
Q 005108 237 ICGGDAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGR-IGEAVKECEEAVRLDPNYWRAHQR 315 (714)
Q Consensus 237 ~~p~~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~a~~~ 315 (714)
+.|+..+++..+|.++.+.+.+++|+.+|++||+++|++..+|+++|.++..+|+ +++|+..++++++++|++..+|..
T Consensus 38 ~~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~ 117 (315)
T d2h6fa1 38 YSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHH 117 (315)
T ss_dssp CCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 4566678888899999999999999999999999999999999999999999875 999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 005108 316 LGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEA 395 (714)
Q Consensus 316 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~ 395 (714)
+|.++..+|++++|+..| +++++.+|.+ ...|..+|.+
T Consensus 118 ~~~~~~~l~~~~eAl~~~-----------------------------------------~kal~~dp~n-~~a~~~~~~~ 155 (315)
T d2h6fa1 118 RRVLVEWLRDPSQELEFI-----------------------------------------ADILNQDAKN-YHAWQHRQWV 155 (315)
T ss_dssp HHHHHHHHTCCTTHHHHH-----------------------------------------HHHHHHCTTC-HHHHHHHHHH
T ss_pred HhHHHHhhccHHHHHHHH-----------------------------------------hhhhhhhhcc-hHHHHHHHHH
Confidence 999988877776666555 4455566653 4445556666
Q ss_pred HHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCc------HHHHHHHHHHHhccCCCCHH
Q 005108 396 LLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGR------FENAVTAAEKAGQIDPRNVE 469 (714)
Q Consensus 396 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~------~~~A~~~~~~al~~~p~~~~ 469 (714)
+..++++++|+.+|+++++++|.+ ..+|..++.++...++ +++|++.+.++++++|++..
T Consensus 156 ~~~~~~~~~Al~~~~~al~~~p~n--------------~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P~~~~ 221 (315)
T d2h6fa1 156 IQEFKLWDNELQYVDQLLKEDVRN--------------NSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNES 221 (315)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTTC--------------HHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHH
T ss_pred HHHHHhhHHHHHHHHHHHHHCCcc--------------HHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhCCCchH
Confidence 666666666666666666666666 5566666666655544 45555555566666665555
Q ss_pred HHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCC
Q 005108 470 VAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPS 512 (714)
Q Consensus 470 ~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~ 512 (714)
+|..+ +.++... ..+++.+.+++++++.|+
T Consensus 222 ~~~~l------------~~ll~~~-~~~~~~~~~~~~~~l~~~ 251 (315)
T d2h6fa1 222 AWNYL------------KGILQDR-GLSKYPNLLNQLLDLQPS 251 (315)
T ss_dssp HHHHH------------HHHHTTT-CGGGCHHHHHHHHHHTTT
T ss_pred HHHHH------------HHHHHhc-ChHHHHHHHHHHHHhCCC
Confidence 55443 3333322 234555555555554443
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=6.3e-22 Score=202.58 Aligned_cols=239 Identities=14% Similarity=0.041 Sum_probs=201.9
Q ss_pred HHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC-HHHHHHHHHhhcCCCChHHHHH
Q 005108 269 ISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVRLGQ-VENARRHLCLSGQQADPTEVHR 347 (714)
Q Consensus 269 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~ 347 (714)
|..+|+...++..++.++.+.+.+++|+..++++++++|++..+|+.+|.++..+++ +++|+..
T Consensus 36 I~~~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~--------------- 100 (315)
T d2h6fa1 36 IIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNY--------------- 100 (315)
T ss_dssp ECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHH---------------
T ss_pred cccCHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHH---------------
Confidence 445677788999999999999999999999999999999999999999999887653 5555554
Q ss_pred HHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhh
Q 005108 348 LQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRF 427 (714)
Q Consensus 348 l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 427 (714)
++++++.+|+ ...+|..+|.++..+|++++|+.+++++++++|.+
T Consensus 101 --------------------------~~~al~~~p~-~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~n-------- 145 (315)
T d2h6fa1 101 --------------------------ITAIIEEQPK-NYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKN-------- 145 (315)
T ss_dssp --------------------------HHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC--------
T ss_pred --------------------------HHHHHHHHHh-hhhHHHHHhHHHHhhccHHHHHHHHhhhhhhhhcc--------
Confidence 5677788887 46677779999999999999999999999999999
Q ss_pred hhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcC------HHHHHH
Q 005108 428 FGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSER------FTEACQ 501 (714)
Q Consensus 428 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~------~~~A~~ 501 (714)
..+|..+|.++...+++++|++.|+++++++|.+..+|..+ |.++...+. +++|++
T Consensus 146 ------~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r------------~~~l~~~~~~~~~~~~~~ai~ 207 (315)
T d2h6fa1 146 ------YHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQR------------YFVISNTTGYNDRAVLEREVQ 207 (315)
T ss_dssp ------HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHH------------HHHHHHTTCSCSHHHHHHHHH
T ss_pred ------hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHH------------HHHHHHccccchhhhhHHhHH
Confidence 88999999999999999999999999999999999999866 777666554 789999
Q ss_pred HHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHh--ccHHHHHHHHHHHHH
Q 005108 502 AYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNY--TKALLRRAASNSKL--EKWADAVRDFEVLRR 576 (714)
Q Consensus 502 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~--g~~~eA~~~~~~al~ 576 (714)
.+.++++++|++..+|++++.++...+ .+++.+.+++++++.|+. ..++..++.+|... ++.+.+...++++++
T Consensus 208 ~~~~al~~~P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~ka~~ 285 (315)
T d2h6fa1 208 YTLEMIKLVPHNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALE 285 (315)
T ss_dssp HHHHHHHHSTTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred HHHHHHHhCCCchHHHHHHHHHHHhcC-hHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 999999999999999999999876544 688999999999988764 56667777777543 344445555555443
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.84 E-value=1.8e-21 Score=201.44 Aligned_cols=263 Identities=10% Similarity=-0.075 Sum_probs=217.1
Q ss_pred hhhhhcCCCCCcHHHHHHHHHHHHH----------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC--HHHHHH
Q 005108 230 VNRNRGGICGGDAEELKRMGNELYR----------KGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGR--IGEAVK 297 (714)
Q Consensus 230 ~~~~~~~~~p~~~~~~~~~g~~~~~----------~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~--~~~A~~ 297 (714)
.+.....++|++..+|..++..+.. .|++++|+.+|+++++.+|++..+|+.+|.++..+++ +++|+.
T Consensus 51 ~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~~~~a~~ 130 (334)
T d1dcea1 51 LTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELE 130 (334)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHH
T ss_pred HHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhccccHHHHHH
Confidence 3344445788888777666666544 4458999999999999999999999999999988875 899999
Q ss_pred HHHHHHhcCCCcHHHHH-HHHHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHH
Q 005108 298 ECEEAVRLDPNYWRAHQ-RLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDA 376 (714)
Q Consensus 298 ~~~~al~~~p~~~~a~~-~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~ 376 (714)
.++++++.+|.+..++. .++.++...+++++|+..++++
T Consensus 131 ~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~---------------------------------------- 170 (334)
T d1dcea1 131 LCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSL---------------------------------------- 170 (334)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTT----------------------------------------
T ss_pred HHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHH----------------------------------------
Confidence 99999999999888764 5667777777777776666544
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHH
Q 005108 377 AIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTA 456 (714)
Q Consensus 377 al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 456 (714)
++.+|. ....+..+|.++..+|++++|+..++++++..|.. ......+...+..+++...
T Consensus 171 -i~~~p~-~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------------------~~~~~~~~~l~~~~~a~~~ 230 (334)
T d1dcea1 171 -ITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKE------------------LELVQNAFFTDPNDQSAWF 230 (334)
T ss_dssp -TTTTCC-CHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHH------------------HHHHHHHHHHCSSCSHHHH
T ss_pred -HHcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHHH------------------HHHHHHHHHhcchhHHHHH
Confidence 455665 35566679999999999999998888888776654 2233445677888999999
Q ss_pred HHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHH
Q 005108 457 AEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVED 536 (714)
Q Consensus 457 ~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 536 (714)
+.+++..+|.+...+..+ +.++...+++++|+..|.++++.+|.+..++..+|.+|..+|++++|+++
T Consensus 231 ~~~~l~~~~~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~ 298 (334)
T d1dcea1 231 YHRWLLGRAEPLFRCELS------------VEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQY 298 (334)
T ss_dssp HHHHHHSCCCCSSSCCCC------------HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHH
T ss_pred HHHHHHhCcchhhHHHHH------------HHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 999999999888776655 88889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhccH
Q 005108 537 SNQALLIQPNYTKALLRRAASNSKLEKW 564 (714)
Q Consensus 537 ~~~al~~~p~~~~~~~~la~~~~~~g~~ 564 (714)
|+++++++|++...|..++..+.....+
T Consensus 299 ~~~ai~ldP~~~~y~~~L~~~~~~e~~~ 326 (334)
T d1dcea1 299 FSTLKAVDPMRAAYLDDLRSKFLLENSV 326 (334)
T ss_dssp HHHHHHHCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCcccHHHHHHHHHHHhHhhHH
Confidence 9999999999999999998888754333
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.84 E-value=2.9e-19 Score=184.77 Aligned_cols=286 Identities=12% Similarity=-0.046 Sum_probs=229.1
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC------c
Q 005108 241 DAEELKRMGNELYRKGCFGEALSMYDKAISLAPRN-----AAFRSNRAAALTGLGRIGEAVKECEEAVRLDPN------Y 309 (714)
Q Consensus 241 ~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~ 309 (714)
.++....+|.+++..|++++|+.+|+++++..|.+ ..++..+|.+|..+|++++|+..|++++++.+. .
T Consensus 11 ~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 90 (366)
T d1hz4a_ 11 HAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYA 90 (366)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHH
Confidence 45777889999999999999999999999999986 457889999999999999999999999986543 2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhhcCC----CChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCC-
Q 005108 310 WRAHQRLGSLLVRLGQVENARRHLCLSGQQ----ADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADF- 384 (714)
Q Consensus 310 ~~a~~~la~~~~~~g~~~~A~~~~~~al~~----~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~- 384 (714)
..++..++.++...|++..|+..+.+++.. .... .......+..++.++...|+++.+...+.+++...+..
T Consensus 91 ~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~ 167 (366)
T d1hz4a_ 91 LWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQ---LPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQ 167 (366)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTT---STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccch---hhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhh
Confidence 567889999999999999999999988641 1111 11223345667888999999999999999999886542
Q ss_pred ---CHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHh
Q 005108 385 ---SPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAG 461 (714)
Q Consensus 385 ---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 461 (714)
....+...+..+...+++.++...+.++.......... ......++..++.++...|++++|...+++++
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 240 (366)
T d1hz4a_ 168 PQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYH-------SDWISNANKVRVIYWQMTGDKAAAANWLRHTA 240 (366)
T ss_dssp GGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCC-------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred hhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccc-------CchHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 24556668899999999999999998887655443110 11225567888999999999999999999999
Q ss_pred ccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhcc------CCCCHHHHHHHHHHHHHhCCHHHHHH
Q 005108 462 QIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRF------DPSNSVLYCNRAACWFKLGQWERSVE 535 (714)
Q Consensus 462 ~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~~~~A~~ 535 (714)
...+.+....... ...+|.++...|++++|+.++++++.. .|....++..+|.+|..+|++++|++
T Consensus 241 ~~~~~~~~~~~~~--------~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 312 (366)
T d1hz4a_ 241 KPEFANNHFLQGQ--------WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQR 312 (366)
T ss_dssp CCCCTTCGGGHHH--------HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HhccccchHHHHH--------HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 8887654322111 123599999999999999999999853 45567899999999999999999999
Q ss_pred HHHHHHHhC
Q 005108 536 DSNQALLIQ 544 (714)
Q Consensus 536 ~~~~al~~~ 544 (714)
.|++++++.
T Consensus 313 ~l~~Al~l~ 321 (366)
T d1hz4a_ 313 VLLDALKLA 321 (366)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999999864
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.82 E-value=2.3e-19 Score=177.83 Aligned_cols=226 Identities=12% Similarity=0.078 Sum_probs=135.5
Q ss_pred CHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 005108 257 CFGEALSMYDKAISLAP----RNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVRLGQVENARRH 332 (714)
Q Consensus 257 ~~~~Al~~~~~al~~~p----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~ 332 (714)
+.+.|+..+++++...+ ..+.+++.+|.+|..+|++++|+..|+++++++|+++.+|+.+|.+|..+|++++|+..
T Consensus 14 ~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~ 93 (259)
T d1xnfa_ 14 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEA 93 (259)
T ss_dssp HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhh
Confidence 34555666666655322 23556777777777777777777777777777777777777777776666666666555
Q ss_pred HHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHhhcc
Q 005108 333 LCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNI 412 (714)
Q Consensus 333 ~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 412 (714)
| +++++.+|++. ..+..+|.+|..+|++++|+..|+++
T Consensus 94 ~-----------------------------------------~~al~~~p~~~-~a~~~lg~~~~~~g~~~~A~~~~~~a 131 (259)
T d1xnfa_ 94 F-----------------------------------------DSVLELDPTYN-YAHLNRGIALYYGGRDKLAQDDLLAF 131 (259)
T ss_dssp H-----------------------------------------HHHHHHCTTCT-HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred h-----------------------------------------hHHHHHHhhhh-hhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 4 33444555432 33445666666666667777777777
Q ss_pred ccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhh
Q 005108 413 PKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFK 492 (714)
Q Consensus 413 l~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~ 492 (714)
++.+|.+ ...+..++..+...+..+.+...........+.......... .......
T Consensus 132 l~~~p~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~ 187 (259)
T d1xnfa_ 132 YQDDPND--------------PFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEF----------YLGNISE 187 (259)
T ss_dssp HHHCTTC--------------HHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHHHHH----------HTTSSCH
T ss_pred Hhhcccc--------------HHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhhhhhHHHH----------HHHHHHH
Confidence 7777766 444555566666666655555555555554444432211000 0000112
Q ss_pred CcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH
Q 005108 493 SERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYT 548 (714)
Q Consensus 493 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 548 (714)
.+.++.+...+...+...|....+|+++|.+|..+|++++|+.+|++++..+|++.
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 243 (259)
T d1xnfa_ 188 QTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNF 243 (259)
T ss_dssp HHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTC
T ss_pred HHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCH
Confidence 23344555555555555666667777788888888888888888888887777654
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.82 E-value=1.7e-18 Score=178.94 Aligned_cols=291 Identities=15% Similarity=0.043 Sum_probs=230.5
Q ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc-----HHHHHHHHHHHHHcCCHHHHHHHHHhhcCCCChHHHHHH
Q 005108 274 RNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNY-----WRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRL 348 (714)
Q Consensus 274 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l 348 (714)
..+++...+|.+++..|++++|+..|+++++..|++ ..++..+|.+|..+|++++|+..|++++...... ....
T Consensus 10 ~~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~-~~~~ 88 (366)
T d1hz4a_ 10 MHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQH-DVWH 88 (366)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT-TCHH
T ss_pred hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh-cchH
Confidence 346778889999999999999999999999999876 4578899999999999999999999987511110 1112
Q ss_pred HHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCC-----CC--CHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCC
Q 005108 349 QVVEKHLSKCTDARKVGDWKSALREGDAAIAAGA-----DF--SPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVS 421 (714)
Q Consensus 349 ~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p-----~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 421 (714)
..+..+..++..+...+++..++..+.+++...+ .. ....+..++.++...|+++.+...+.+++...+....
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 168 (366)
T d1hz4a_ 89 YALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQP 168 (366)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhh
Confidence 3445677788889999999999999999987532 11 1235566899999999999999999999887766421
Q ss_pred chhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHH
Q 005108 422 SSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQ 501 (714)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~ 501 (714)
......+...+..+...+++.++...+.++.............. ...+...+..+...|++++|..
T Consensus 169 ---------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~a~~ 234 (366)
T d1hz4a_ 169 ---------QQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWI-----SNANKVRVIYWQMTGDKAAAAN 234 (366)
T ss_dssp ---------GGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHH-----HHHHHHHHHHHHHTTCHHHHHH
T ss_pred ---------hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchH-----HHHHHHHHHHHHhcccHHHHHH
Confidence 12356778889999999999999999998876543321100000 0112235889999999999999
Q ss_pred HHHHhhccCCCC----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHhccHHHHHHHH
Q 005108 502 AYGEGLRFDPSN----SVLYCNRAACWFKLGQWERSVEDSNQALLI------QPNYTKALLRRAASNSKLEKWADAVRDF 571 (714)
Q Consensus 502 ~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~~~eA~~~~ 571 (714)
+++++++..+.+ ...+.++|.++...|++++|+..+++++.. .|....++..+|.+|..+|++++|++.|
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l 314 (366)
T d1hz4a_ 235 WLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVL 314 (366)
T ss_dssp HHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 999999987654 466778999999999999999999999853 3556688999999999999999999999
Q ss_pred HHHHHhCC
Q 005108 572 EVLRRELP 579 (714)
Q Consensus 572 ~~al~~~p 579 (714)
++++++.+
T Consensus 315 ~~Al~l~~ 322 (366)
T d1hz4a_ 315 LDALKLAN 322 (366)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 99998754
|
| >d1syra_ c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=99.80 E-value=5.8e-20 Score=153.68 Aligned_cols=101 Identities=32% Similarity=0.572 Sum_probs=96.0
Q ss_pred eeehhhhHHhhhccCCCceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCcchhhhCCccccceEEEEeCCe
Q 005108 613 EEVSSLEQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAHAENVRIVPTFKIYKNGS 692 (714)
Q Consensus 613 ~~i~~~e~~~~~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~ 692 (714)
..+.+.++|.+++...+.++|+||++||++|+.+.|.++++..+++++.|+++|+|+.++++++|+|+++||+++|++|+
T Consensus 3 ~~i~s~~~f~~~i~~~~~vvv~F~a~wC~~C~~~~~~~~~l~~~~~~~~~~~vd~d~~~~~~~~~~V~~~Pt~i~~k~G~ 82 (103)
T d1syra_ 3 KIVTSQAEFDSIISQNELVIVDFFAEWCGPCKRIAPFYEECSKTYTKMVFIKVDVDEVSEVTEKENITSMPTFKVYKNGS 82 (103)
T ss_dssp EEECSHHHHHHHHHHCSEEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTTHHHHHHTTCCSSSEEEEEETTE
T ss_pred EEeCCHHHHHHHHhCCCcEEEEEeCCcccCcccccccchhhhhcccceEEEeeccccCcceeeeeeeecceEEEEEECCE
Confidence 45677889999988888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEcCCCHHHHHHHHhhhc
Q 005108 693 RMKEIVCPSRDMLEHSVRHYS 713 (714)
Q Consensus 693 ~~~~~~g~~~~~l~~~~~~~~ 713 (714)
.+.++.|.+.++|+++|++|+
T Consensus 83 ~v~~~~G~~~~~l~~~i~k~a 103 (103)
T d1syra_ 83 SVDTLLGANDSALKQLIEKYA 103 (103)
T ss_dssp EEEEEESCCHHHHHHHHHTTC
T ss_pred EEEEEeCcCHHHHHHHHHhhC
Confidence 999999999999999999985
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.79 E-value=1.4e-18 Score=171.98 Aligned_cols=226 Identities=13% Similarity=-0.004 Sum_probs=177.5
Q ss_pred CHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Q 005108 325 QVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLED 404 (714)
Q Consensus 325 ~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~ 404 (714)
+.+.|+..+++++...+... ......++.+|.+|...|++++|+..|+++++++|++ +..+..+|.+|..+|++++
T Consensus 14 ~~e~al~~~~e~l~~~~~~~---~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~-~~a~~~lg~~~~~~g~~~~ 89 (259)
T d1xnfa_ 14 QQEVILARMEQILASRALTD---DERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDM-PEVFNYLGIYLTQAGNFDA 89 (259)
T ss_dssp HHHHHHHHHHHHHTSSCCCH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHhhhcCC---HHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCC-HHHHhhhchHHHHHHHHHH
Confidence 34556666666665332211 1245667889999999999999999999999999985 6677789999999999999
Q ss_pred HHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHH
Q 005108 405 AESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARAR 484 (714)
Q Consensus 405 A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~ 484 (714)
|+..|+++++++|++ ..+++.+|.++..+|++++|+..|+++++++|++......+
T Consensus 90 A~~~~~~al~~~p~~--------------~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~---------- 145 (259)
T d1xnfa_ 90 AYEAFDSVLELDPTY--------------NYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWL---------- 145 (259)
T ss_dssp HHHHHHHHHHHCTTC--------------THHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH----------
T ss_pred hhhhhhHHHHHHhhh--------------hhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHH----------
Confidence 999999999999998 77899999999999999999999999999999998776544
Q ss_pred HHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHH----HHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005108 485 ARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACW----FKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSK 560 (714)
Q Consensus 485 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~----~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 560 (714)
+..+...+..+.+...........+..... .+...+ ...+.++.+...+...+...|+...+++.+|.+|..
T Consensus 146 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~ 221 (259)
T d1xnfa_ 146 --YLAEQKLDEKQAKEVLKQHFEKSDKEQWGW--NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLS 221 (259)
T ss_dssp --HHHHHHHCHHHHHHHHHHHHHHSCCCSTHH--HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHhhhHHHHHHHHHHhhccchhhhhh--hHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHH
Confidence 555566666555555555555554444221 111111 234456777777777777888888999999999999
Q ss_pred hccHHHHHHHHHHHHHhCCCCH
Q 005108 561 LEKWADAVRDFEVLRRELPDDN 582 (714)
Q Consensus 561 ~g~~~eA~~~~~~al~~~p~~~ 582 (714)
+|++++|+.+|++++..+|++-
T Consensus 222 ~g~~~~A~~~~~~al~~~p~~~ 243 (259)
T d1xnfa_ 222 LGDLDSATALFKLAVANNVHNF 243 (259)
T ss_dssp TTCHHHHHHHHHHHHTTCCTTC
T ss_pred CCCHHHHHHHHHHHHHcCCCCH
Confidence 9999999999999999999874
|
| >d1r26a_ c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Trypanosoma brucei [TaxId: 5691]
Probab=99.79 E-value=1.4e-19 Score=153.39 Aligned_cols=102 Identities=28% Similarity=0.445 Sum_probs=96.1
Q ss_pred ceeeehhhhHHhhhccCCCceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCcchhhhCCccccceEEEEeC
Q 005108 611 EVEEVSSLEQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAHAENVRIVPTFKIYKN 690 (714)
Q Consensus 611 ~~~~i~~~e~~~~~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~ 690 (714)
.+..+.+.++|..++..+.+++|+||++||++|+.+.|.++++..+++++.|++||+|+.++++..|+|+++||+++|++
T Consensus 9 ~vi~i~s~~~~~~~~~~~~~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~~~l~~~~~V~~~Pt~~~~~~ 88 (113)
T d1r26a_ 9 SVVDVYSVEQFRNIMSEDILTVAWFTAVWCGPCKTIERPMEKIAYEFPTVKFAKVDADNNSEIVSKCRVLQLPTFIIARS 88 (113)
T ss_dssp CCEEECCHHHHHHHHHSSSCEEEEEECTTCHHHHHTHHHHHHHHHHCTTSEEEEEETTTCHHHHHHTTCCSSSEEEEEET
T ss_pred ceEEeCCHHHHHHHHcCCCeEEEEEECCCCccchhhceeccccccccccccccccccccchhhHHHccccCCCEEEEEEC
Confidence 46678888999999988999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEcCCCHHHHHHHHhhh
Q 005108 691 GSRMKEIVCPSRDMLEHSVRHY 712 (714)
Q Consensus 691 G~~~~~~~g~~~~~l~~~~~~~ 712 (714)
|+.+.+++|.+++.+++.|+.+
T Consensus 89 G~~v~~~~G~~~~~l~~~l~~~ 110 (113)
T d1r26a_ 89 GKMLGHVIGANPGMLRQKLRDI 110 (113)
T ss_dssp TEEEEEEESSCHHHHHHHHHHH
T ss_pred CEEEEEEeCCCHHHHHHHHHHH
Confidence 9999999999888888888764
|
| >d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin-like protein, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.78 E-value=1.3e-19 Score=151.88 Aligned_cols=101 Identities=27% Similarity=0.485 Sum_probs=93.1
Q ss_pred eeeehhhhHHhhhccC--CCceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCcchhhhCCccccceEEEEe
Q 005108 612 VEEVSSLEQFRAAVSL--PGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAHAENVRIVPTFKIYK 689 (714)
Q Consensus 612 ~~~i~~~e~~~~~i~~--~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~ 689 (714)
+..+.+.++|...+.. ..+++|+||++||++|+.+.|.++++..+++++.|+++|+|++++++..|+|.++||+++|+
T Consensus 3 v~~i~s~~~f~~~l~~~~~klvvv~F~a~wC~~Ck~~~p~~~~la~~~~~~~f~~vd~d~~~~l~~~~~v~~~Pt~~~~~ 82 (107)
T d1gh2a_ 3 VKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQCQGTAATNNISATPTFQFFR 82 (107)
T ss_dssp EEEECSGGGHHHHHHHTTTSCEEEEEECSSCHHHHHHHHHHHHHHHHCTTSEEEEEETTTSHHHHHHTTCCSSSEEEEEE
T ss_pred eEEcCCHHHHHHHHHhCCCCEEEEEEECCCCCCccccchhhhccccccccccccccccccchhhhhhcCceeceEEEEEE
Confidence 4456677788877744 56899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEcCCCHHHHHHHHhhh
Q 005108 690 NGSRMKEIVCPSRDMLEHSVRHY 712 (714)
Q Consensus 690 ~G~~~~~~~g~~~~~l~~~~~~~ 712 (714)
+|+.+.+++|.+.++|++.|++|
T Consensus 83 ~G~~v~~~~G~~~~~l~~~i~k~ 105 (107)
T d1gh2a_ 83 NKVRIDQYQGADAVGLEEKIKQH 105 (107)
T ss_dssp TTEEEEEEESSCHHHHHHHHHHH
T ss_pred CCEEEEEEeCCCHHHHHHHHHHh
Confidence 99999999999999999999986
|
| >d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.78 E-value=3.1e-19 Score=149.65 Aligned_cols=100 Identities=28% Similarity=0.563 Sum_probs=92.4
Q ss_pred eeehhhhHHhhhccC--CCceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCcchhhhCCccccceEEEEeC
Q 005108 613 EEVSSLEQFRAAVSL--PGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAHAENVRIVPTFKIYKN 690 (714)
Q Consensus 613 ~~i~~~e~~~~~i~~--~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~ 690 (714)
..+.+.+.|++.+.. +++++|+||++||++|+.+.|.+.++.++++++.|++||+|++++++..|+|+++||+++|+|
T Consensus 3 ~~i~s~~~f~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~vd~d~~~~~~~~~~V~~~Pt~~~~~~ 82 (105)
T d2ifqa1 3 KQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASECEVKCMPTFQFFKK 82 (105)
T ss_dssp EEECSHHHHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTCHHHHHHTTCCBSSEEEEEET
T ss_pred EEcCCHHHHHHHHHhCCCCEEEEEEEcCCccchhhhhhhhhhhccccccceeeecccccCHhHHHHcCceEEEEEEEEEC
Confidence 456677888887743 568999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEcCCCHHHHHHHHhhh
Q 005108 691 GSRMKEIVCPSRDMLEHSVRHY 712 (714)
Q Consensus 691 G~~~~~~~g~~~~~l~~~~~~~ 712 (714)
|+.+.++.|.+.++|+++|+++
T Consensus 83 G~~v~~~~G~~~~~l~~~i~~~ 104 (105)
T d2ifqa1 83 GQKVGEFSGANKEKLEATINEL 104 (105)
T ss_dssp TEEEEEEESCCHHHHHHHHHHH
T ss_pred CEEEEEEeCCCHHHHHHHHHhh
Confidence 9999999999999999999875
|
| >d1xfla_ c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.77 E-value=4.9e-19 Score=150.68 Aligned_cols=103 Identities=26% Similarity=0.459 Sum_probs=92.8
Q ss_pred ceeeehhhhHHhhhc----cCCCceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCcchhhhCCccccceEE
Q 005108 611 EVEEVSSLEQFRAAV----SLPGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAHAENVRIVPTFK 686 (714)
Q Consensus 611 ~~~~i~~~e~~~~~i----~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~ 686 (714)
.+..+.+.+.|.+.+ ...++++|+||++||++|+.+.|.++++...++++.|++||+++.++++++|+|+++||++
T Consensus 7 ~vi~i~s~~~~~~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~vd~~~~~~l~~~~~V~~~Pt~~ 86 (114)
T d1xfla_ 7 QVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPNVLFLKVDTDELKSVASDWAIQAMPTFM 86 (114)
T ss_dssp CCEEESSHHHHHHHHHHHHHTTCEEEEEEECTTCHHHHHHHHHHHHHHHHCSSEEEEEEETTTSHHHHHHTTCCSSSEEE
T ss_pred cEEEEcCHHHHHHHHHHhhccCCeEEEEEEcCCCCCccccccchhhhcccccccceeEEEeeeceeeccccceeeeEEEE
Confidence 455566666665544 4577999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCeEEEEEcCCCHHHHHHHHhhhc
Q 005108 687 IYKNGSRMKEIVCPSRDMLEHSVRHYS 713 (714)
Q Consensus 687 ~~~~G~~~~~~~g~~~~~l~~~~~~~~ 713 (714)
+|++|+++.+++|.+.++|+++|++|-
T Consensus 87 ~~~~G~~v~~~~G~~~~~l~~~i~k~l 113 (114)
T d1xfla_ 87 FLKEGKILDKVVGAKKDELQSTIAKHL 113 (114)
T ss_dssp EEETTEEEEEEESCCHHHHHHHHHHHC
T ss_pred EEECCEEEEEEeCcCHHHHHHHHHHhh
Confidence 999999999999999999999999873
|
| >d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Chlamydomonas reinhardtii [TaxId: 3055]
Probab=99.76 E-value=6.8e-19 Score=149.16 Aligned_cols=104 Identities=34% Similarity=0.522 Sum_probs=94.1
Q ss_pred cceeeehhhhHHhhhc----cCCCceEEEeecCCCccccccchHHHHHHhhCCC-cEEEEEecccCcchhhhCCccccce
Q 005108 610 GEVEEVSSLEQFRAAV----SLPGVSVVHFKSASNLHCKQISPYVETLCGRYPS-INFLKVDIDESPGVAHAENVRIVPT 684 (714)
Q Consensus 610 ~~~~~i~~~e~~~~~i----~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~-~~~~~vd~d~~~~l~~~~~v~~~Pt 684 (714)
+.+..+.+.+.|+..+ ....+++|+||++||++|+.+.|.++++..++++ +.|+.||+|+.++++++|+|+++||
T Consensus 2 g~v~~i~t~~~fd~~l~~~~~~~k~vvv~f~a~wC~~C~~~~p~~~~l~~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt 81 (112)
T d1ep7a_ 2 GSVIVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDAVAAVAEAAGITAMPT 81 (112)
T ss_dssp CSEEEECSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTTHHHHHHHTCCBSSE
T ss_pred CCEEEEeCHHHHHHHHHHHhhcCCeEEEEEEcCCcCCCcccchhhhhhhhcccceEEEEEeeccccccccccccccCCCE
Confidence 4566777777766655 3457899999999999999999999999999985 9999999999999999999999999
Q ss_pred EEEEeCCeEEEEEcCCCHHHHHHHHhhhc
Q 005108 685 FKIYKNGSRMKEIVCPSRDMLEHSVRHYS 713 (714)
Q Consensus 685 ~~~~~~G~~~~~~~g~~~~~l~~~~~~~~ 713 (714)
+++|++|+.+.++.|.+.++|+++|++|+
T Consensus 82 ~~~~~~G~~v~~~~G~~~~~l~~~i~k~~ 110 (112)
T d1ep7a_ 82 FHVYKDGVKADDLVGASQDKLKALVAKHA 110 (112)
T ss_dssp EEEEETTEEEEEEESCCHHHHHHHHHHHH
T ss_pred EEEEECCEEEEEEeCcCHHHHHHHHHHHh
Confidence 99999999999999999999999999986
|
| >d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus tremula), thioredoxin H [TaxId: 113636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: European aspen (Populus tremula), thioredoxin H [TaxId: 113636]
Probab=99.75 E-value=7.2e-19 Score=149.49 Aligned_cols=103 Identities=29% Similarity=0.476 Sum_probs=92.6
Q ss_pred ceeeehhhhHHh----hhccCCCceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCcchhhhCCccccceEE
Q 005108 611 EVEEVSSLEQFR----AAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAHAENVRIVPTFK 686 (714)
Q Consensus 611 ~~~~i~~~e~~~----~~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~ 686 (714)
.+..+.+.+.++ .++...++++|+||++||++|+.+.|.++++..+++++.|+.||+|+.++++.+|+|+++||++
T Consensus 5 ~vi~i~s~e~~~~~l~~~~~~~k~vvv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~I~~~Pt~~ 84 (113)
T d1ti3a_ 5 QVIACHTVDTWKEHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFPNVTFLKVDVDELKAVAEEWNVEAMPTFI 84 (113)
T ss_dssp CEEEECSHHHHHHHHHHHTTSSSEEEEEEECSSCHHHHHHHHHHHHHHHHCSSEEEEEEETTTCHHHHHHHHCSSTTEEE
T ss_pred cEEEEeCHHHHHHHHHHHHcCCCEEEEEEEcCccccchhhhhhhhhhhccCCCceEEeeeeeccccccccCeecccceEE
Confidence 455555555444 4556678999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCeEEEEEcCCCHHHHHHHHhhhc
Q 005108 687 IYKNGSRMKEIVCPSRDMLEHSVRHYS 713 (714)
Q Consensus 687 ~~~~G~~~~~~~g~~~~~l~~~~~~~~ 713 (714)
+|+||+.+.++.|.+.++|+++|++|+
T Consensus 85 ~~k~G~~v~~~~G~~~~~l~~~i~k~a 111 (113)
T d1ti3a_ 85 FLKDGKLVDKTVGADKDGLPTLVAKHA 111 (113)
T ss_dssp EEETTEEEEEEECCCTTHHHHHHHHHH
T ss_pred EEECCEEEEEEcCCCHHHHHHHHHHHh
Confidence 999999999999998899999999985
|
| >d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]
Probab=99.74 E-value=1.6e-18 Score=145.47 Aligned_cols=95 Identities=20% Similarity=0.377 Sum_probs=89.5
Q ss_pred hhHHhhhccCCCceEEEeecCCCccccccchHHHHHHhhCCC-cEEEEEecccCcchhhhCCccccceEEEEeCCeEEEE
Q 005108 618 LEQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYPS-INFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKE 696 (714)
Q Consensus 618 ~e~~~~~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~-~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~~ 696 (714)
.++|++++...++++|+||++||++|+.+.|.++++..++++ +.|++||+++.++++..|+|.++||+++|++|+.+.+
T Consensus 7 ~~~f~~~i~~~k~vvv~F~a~wC~~C~~~~~~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~V~~~Pt~~~~~~G~~~~~ 86 (105)
T d1nw2a_ 7 DANFQQAIQGDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETTSQFGIMSIPTLILFKGGEPVKQ 86 (105)
T ss_dssp TTTHHHHTTSSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTCEEEEEETTTCHHHHHHTTCCBSSEEEEEETTEEEEE
T ss_pred HHHHHHHHhCCCcEEEEEECCCCCCcccccchhhhhhhhcCCceEEEEEECCCCcccHHHCCcceeeEEEEEECCEEEEE
Confidence 356788888888999999999999999999999999999975 9999999999999999999999999999999999999
Q ss_pred EcCC-CHHHHHHHHhhh
Q 005108 697 IVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 697 ~~g~-~~~~l~~~~~~~ 712 (714)
+.|. +.++|+++|+++
T Consensus 87 ~~G~~~~~~l~~~i~~~ 103 (105)
T d1nw2a_ 87 LIGYQPKEQLEAQLADV 103 (105)
T ss_dssp EESCCCHHHHHHHTTTT
T ss_pred EECCCCHHHHHHHHHHH
Confidence 9999 999999999875
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.72 E-value=5.8e-17 Score=138.94 Aligned_cols=113 Identities=27% Similarity=0.520 Sum_probs=108.2
Q ss_pred HHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005108 480 VARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNS 559 (714)
Q Consensus 480 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 559 (714)
+..++..|..++..|+|++|+.+|+++++.+|+++.+|.++|.+|.++|++++|+..|+++++++|+++.+|+++|.++.
T Consensus 3 ~~~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~ 82 (117)
T d1elwa_ 3 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 82 (117)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHH
Confidence 34456789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 005108 560 KLEKWADAVRDFEVLRRELPDDNEIAESLFHAQ 592 (714)
Q Consensus 560 ~~g~~~eA~~~~~~al~~~p~~~~~~~~L~~~~ 592 (714)
.+|++++|+..|+++++++|+++.+...+.+++
T Consensus 83 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~l~ 115 (117)
T d1elwa_ 83 FLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 115 (117)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHh
Confidence 999999999999999999999999999988765
|
| >d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Anabaena sp., pcc 7120 [TaxId: 1167]
Probab=99.72 E-value=1.1e-17 Score=141.01 Aligned_cols=100 Identities=19% Similarity=0.311 Sum_probs=89.5
Q ss_pred eeeehhhhHHhh-hccCCCceEEEeecCCCccccccchHHHHHHhhCCC-cEEEEEecccCcchhhhCCccccceEEEEe
Q 005108 612 VEEVSSLEQFRA-AVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYPS-INFLKVDIDESPGVAHAENVRIVPTFKIYK 689 (714)
Q Consensus 612 ~~~i~~~e~~~~-~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~-~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~ 689 (714)
+..++. +.|.. ++...++++|.||++||++|+.+.|.++++..++++ +.|++||+|++++++++|+|+++||+++|+
T Consensus 4 V~~lt~-~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~I~~~Pt~~~~~ 82 (108)
T d1thxa_ 4 VITITD-AEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEIDPNPTTVKKYKVEGVPALRLVK 82 (108)
T ss_dssp EEECCG-GGHHHHTTTCSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTTTCEEEEEESTTCHHHHHHTTCCSSSEEEEEE
T ss_pred ceECCH-HHHHHHHHhCCCcEEEEEECCCCCCccccchHHHHHHHhcCCcceeceecccccHHHHHHhcccCCCEEEEEE
Confidence 344443 56665 556677899999999999999999999999999975 899999999999999999999999999999
Q ss_pred CCeEEEEEcCC-CHHHHHHHHhhh
Q 005108 690 NGSRMKEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 690 ~G~~~~~~~g~-~~~~l~~~~~~~ 712 (714)
+|+.+.++.|. +.++|+++|+++
T Consensus 83 ~g~~v~~~~G~~~~~~l~~~i~~~ 106 (108)
T d1thxa_ 83 GEQILDSTEGVISKDKLLSFLDTH 106 (108)
T ss_dssp TTEEEEEEESCCCHHHHHHHHHHH
T ss_pred CCEEEEEEeCCCCHHHHHHHHHHh
Confidence 99999999999 999999999986
|
| >d1xwaa_ c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.71 E-value=1.1e-17 Score=141.58 Aligned_cols=102 Identities=26% Similarity=0.403 Sum_probs=91.7
Q ss_pred ceeeehhhhHHhhhcc--CCCceEEEeecCCCccccccchHHHHHHhhCCC-cEEEEEecccCcchhhhCCccccceEEE
Q 005108 611 EVEEVSSLEQFRAAVS--LPGVSVVHFKSASNLHCKQISPYVETLCGRYPS-INFLKVDIDESPGVAHAENVRIVPTFKI 687 (714)
Q Consensus 611 ~~~~i~~~e~~~~~i~--~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~-~~~~~vd~d~~~~l~~~~~v~~~Pt~~~ 687 (714)
.+..+.+.+.|...+. .+.+++|+||++||++|+.+.|.++++..++++ +.++.||+++.+++++.|+|.++||+++
T Consensus 6 ~v~~i~~~~~~~~~l~~~~~k~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~i~~d~~~~l~~~~~V~~~Pt~~~ 85 (111)
T d1xwaa_ 6 MVYQVKDKADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDECEDIAMEYNISSMPTFVF 85 (111)
T ss_dssp CEEECCSHHHHHHHHHHHTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCHHHHHHTTCCSSSEEEE
T ss_pred eEEEECCHHHHHHHHHhcCCCEEEEEEECCcccCccccchhHHHHhhhcccceEEEEEEeecCcchhhcCCCccccEEEE
Confidence 4456677777777663 356899999999999999999999999999986 8899999999999999999999999999
Q ss_pred EeCCeEEEEEcCCCHHHHHHHHhhh
Q 005108 688 YKNGSRMKEIVCPSRDMLEHSVRHY 712 (714)
Q Consensus 688 ~~~G~~~~~~~g~~~~~l~~~~~~~ 712 (714)
|++|+.+.++.|.+.++|+++|+++
T Consensus 86 ~~~G~~v~~~~G~~~~~l~~~I~~~ 110 (111)
T d1xwaa_ 86 LKNGVKVEEFAGANAKRLEDVIKAN 110 (111)
T ss_dssp EETTEEEEEEESCCHHHHHHHHHHT
T ss_pred EECCEEEEEEeCCCHHHHHHHHHhc
Confidence 9999999999999888999999875
|
| >d1dbya_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Chlamydomonas reinhardtii [TaxId: 3055]
Probab=99.71 E-value=1.1e-17 Score=140.72 Aligned_cols=95 Identities=26% Similarity=0.520 Sum_probs=86.8
Q ss_pred hhHHhhhc-cCCCceEEEeecCCCccccccchHHHHHHhhCC-CcEEEEEecccCcchhhhCCccccceEEEEeCCeEEE
Q 005108 618 LEQFRAAV-SLPGVSVVHFKSASNLHCKQISPYVETLCGRYP-SINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMK 695 (714)
Q Consensus 618 ~e~~~~~i-~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~-~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~ 695 (714)
.+.|++.+ ....+++|+||++||++|+.+.|.+.++..++. ++.|+.||+|..++++++|+|+++||+++|++|+.+.
T Consensus 8 ~~~f~~~v~~s~kpvlv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~V~~~Pt~~~~~~G~~v~ 87 (107)
T d1dbya_ 8 DDTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDESPNVASEYGIRSIPTIMVFKGGKKCE 87 (107)
T ss_dssp HHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHHTCCSSCEEEEESSSSEEE
T ss_pred HHHHHHHHHhCCCcEEEEEECCCCCCccccChHHHHHHHhhcccceEEEEecccchhHHHHhcccceEEEEEEECCeEEE
Confidence 35676654 456689999999999999999999999998885 5999999999999999999999999999999999999
Q ss_pred EEcCC-CHHHHHHHHhhh
Q 005108 696 EIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 696 ~~~g~-~~~~l~~~~~~~ 712 (714)
++.|. +.++|+++|+++
T Consensus 88 ~~~G~~~~~~l~~~i~~~ 105 (107)
T d1dbya_ 88 TIIGAVPKATIVQTVEKY 105 (107)
T ss_dssp EEESCCCHHHHHHHHHHH
T ss_pred EEeCCCCHHHHHHHHHHh
Confidence 99999 999999999986
|
| >d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Escherichia coli [TaxId: 562]
Probab=99.71 E-value=1.8e-17 Score=139.81 Aligned_cols=100 Identities=24% Similarity=0.451 Sum_probs=88.7
Q ss_pred eeeehhhhHHhh-hccCCCceEEEeecCCCccccccchHHHHHHhhCC-CcEEEEEecccCcchhhhCCccccceEEEEe
Q 005108 612 VEEVSSLEQFRA-AVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYP-SINFLKVDIDESPGVAHAENVRIVPTFKIYK 689 (714)
Q Consensus 612 ~~~i~~~e~~~~-~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~-~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~ 689 (714)
+.+++. +.|+. ++...++++|+||++||++|+.+.|.+.++..++. ++.++++|+|+++.++..|+|.++||+++|+
T Consensus 4 v~~lt~-~~f~~~v~~~~~~v~v~F~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~vd~d~~~~l~~~~~v~~~PT~~~~~ 82 (108)
T d2trxa_ 4 IIHLTD-DSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFK 82 (108)
T ss_dssp EEECCT-TTHHHHTTTCSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCTTHHHHTTCCSSSEEEEEE
T ss_pred ceECCH-HHHHHHHHhCCCcEEEEEECCCCCCccccCcHHHHHHHHhhcceeeeeccccchhhHHHHhCCCcEEEEEEEE
Confidence 344444 55655 55677899999999999999999999999988875 5999999999999999999999999999999
Q ss_pred CCeEEEEEcCC-CHHHHHHHHhhh
Q 005108 690 NGSRMKEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 690 ~G~~~~~~~g~-~~~~l~~~~~~~ 712 (714)
+|+.+.++.|. +.+.|.++|+++
T Consensus 83 ~G~~v~~~~G~~~~~~l~~~i~~~ 106 (108)
T d2trxa_ 83 NGEVAATKVGALSKGQLKEFLDAN 106 (108)
T ss_dssp TTEEEEEEESCCCHHHHHHHHHHH
T ss_pred CCEEEEEEeCCCCHHHHHHHHHHh
Confidence 99999999999 999999999875
|
| >d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]
Probab=99.70 E-value=1.1e-17 Score=141.34 Aligned_cols=101 Identities=29% Similarity=0.426 Sum_probs=89.1
Q ss_pred ceeeehhhhHHhhhccC--CCceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEeccc-CcchhhhCCccccceEEE
Q 005108 611 EVEEVSSLEQFRAAVSL--PGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDE-SPGVAHAENVRIVPTFKI 687 (714)
Q Consensus 611 ~~~~i~~~e~~~~~i~~--~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~-~~~l~~~~~v~~~Pt~~~ 687 (714)
.+.++.. +.|...+.. ..+++|+||++||++|+.+.|.++++..+++++.|+++|+++ ++++++.|+|+++||+++
T Consensus 7 ~v~~~~~-d~f~~~l~~~~~k~vvv~f~a~wC~~C~~~~p~~~~l~~~~~~v~~~~vd~~~~~~~l~~~~~V~~~Pt~~~ 85 (112)
T d1f9ma_ 7 KVTEVNK-DTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLDVIFLKLDCNQENKTLAKELGIRVVPTFKI 85 (112)
T ss_dssp SEEEECT-TTHHHHHHTCTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEECSSTTHHHHHHHCCSSSSEEEE
T ss_pred eeEEeCH-HHHHHHHHHcCCCEEEEEEEcCCCcchHHHHHHHhhhccccccceeecccccccchhhHhheeeccCCEEEE
Confidence 4555544 456666643 468999999999999999999999999999999999999975 789999999999999999
Q ss_pred EeCCeEEEEEcCCCHHHHHHHHhhh
Q 005108 688 YKNGSRMKEIVCPSRDMLEHSVRHY 712 (714)
Q Consensus 688 ~~~G~~~~~~~g~~~~~l~~~~~~~ 712 (714)
|++|+.+.+++|.+.+++.++|++.
T Consensus 86 ~k~G~~v~~~~G~~~~~l~e~i~~~ 110 (112)
T d1f9ma_ 86 LKENSVVGEVTGAKYDKLLEAIQAA 110 (112)
T ss_dssp EETTEEEEEEESSCHHHHHHHHHHH
T ss_pred EECCEEEEEEeCCCHHHHHHHHHHc
Confidence 9999999999999889999999875
|
| >d1fb6a_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin species: Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]
Probab=99.70 E-value=2.2e-17 Score=138.20 Aligned_cols=94 Identities=30% Similarity=0.534 Sum_probs=85.9
Q ss_pred hHHhhhc-cCCCceEEEeecCCCccccccchHHHHHHhhCCC-cEEEEEecccCcchhhhCCccccceEEEEeCCeEEEE
Q 005108 619 EQFRAAV-SLPGVSVVHFKSASNLHCKQISPYVETLCGRYPS-INFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKE 696 (714)
Q Consensus 619 e~~~~~i-~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~-~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~~ 696 (714)
+.|.+.+ ....+++|+||++||++|+.+.|.+.++..++.+ +.++.||++++++++++|+|+++||+++|++|+.+.+
T Consensus 7 ~~f~~~v~~~~~~vlv~F~a~wC~~C~~~~~~~~~l~~~~~~~~~~~~v~~d~~~~l~~~~~V~~~Pt~~~~~~G~~v~~ 86 (104)
T d1fb6a_ 7 SSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPGIATQYNIRSIPTVLFFKNGERKES 86 (104)
T ss_dssp TTHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCSSSEEEEEETTEEEEE
T ss_pred hhHHHHHHcCCCcEEEEEEcCccCCccccCchhHHHHHhhcCccceeEEecccchhhhhhcceeeeeEEEEEEcCeEEEE
Confidence 4566544 5566899999999999999999999999999965 8899999999999999999999999999999999999
Q ss_pred EcCC-CHHHHHHHHhhh
Q 005108 697 IVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 697 ~~g~-~~~~l~~~~~~~ 712 (714)
+.|. +.+.|+++|+++
T Consensus 87 ~~G~~~~~~l~~~i~~~ 103 (104)
T d1fb6a_ 87 IIGAVPKSTLTDSIEKY 103 (104)
T ss_dssp EEECCCHHHHHHHHHHH
T ss_pred EeCCCCHHHHHHHHHHh
Confidence 9999 999999999986
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.68 E-value=4.9e-16 Score=141.24 Aligned_cols=120 Identities=27% Similarity=0.499 Sum_probs=112.5
Q ss_pred HHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 005108 478 KLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAAS 557 (714)
Q Consensus 478 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 557 (714)
..+..++.+|+.+++.|+|++|+.+|+++++++|++..+|+++|.+|..+|++++|+..|+++++++|++..+|+.+|.+
T Consensus 8 ~~a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~ 87 (159)
T d1a17a_ 8 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAAS 87 (159)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHH
Confidence 45566677899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhh
Q 005108 558 NSKLEKWADAVRDFEVLRRELPDDNEIAESLFHAQVSLKK 597 (714)
Q Consensus 558 ~~~~g~~~eA~~~~~~al~~~p~~~~~~~~L~~~~~~l~~ 597 (714)
+..+|++++|+..|+++++++|++.++...+.++...++.
T Consensus 88 ~~~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~ 127 (159)
T d1a17a_ 88 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQ 127 (159)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999888877655543
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.66 E-value=2.8e-15 Score=150.80 Aligned_cols=225 Identities=14% Similarity=0.021 Sum_probs=144.6
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC------CCcHHHHHHHHHHHHHcCCHHHHH
Q 005108 257 CFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLD------PNYWRAHQRLGSLLVRLGQVENAR 330 (714)
Q Consensus 257 ~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------p~~~~a~~~la~~~~~~g~~~~A~ 330 (714)
+|++|.++|.++ |.+|..+++|++|++.|++++++. +....+|..+|.+|.++|++++|+
T Consensus 32 ~~~~Aa~~y~~a--------------a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~ 97 (290)
T d1qqea_ 32 KFEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAV 97 (290)
T ss_dssp HHHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHHHHH--------------HHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 467777666654 778888899999999999888763 223567888888888888888888
Q ss_pred HHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-cCCHHHHHHHh
Q 005108 331 RHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLK-LHQLEDAESSL 409 (714)
Q Consensus 331 ~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~-~g~~~~A~~~~ 409 (714)
..|++++. .+...++...+. ..+..++.+|.. .|++++|+++|
T Consensus 98 ~~~~~a~~---------------------~~~~~~~~~~~~---------------~~~~~l~~~~~~~~~~~~~A~~~~ 141 (290)
T d1qqea_ 98 DSLENAIQ---------------------IFTHRGQFRRGA---------------NFKFELGEILENDLHDYAKAIDCY 141 (290)
T ss_dssp HHHHHHHH---------------------HHHHTTCHHHHH---------------HHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHhhH---------------------HhhhcccchhHH---------------HHHHHHHHhHhhHHHHHHHHHHHH
Confidence 88876642 123334443332 233446777754 58899999999
Q ss_pred hccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhH
Q 005108 410 SNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGND 489 (714)
Q Consensus 410 ~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~ 489 (714)
++++++.+... .......++..+|.++..+|+|++|+..|++++...+......... ...+...+.+
T Consensus 142 ~~A~~l~~~~~--------~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~ 208 (290)
T d1qqea_ 142 ELAGEWYAQDQ--------SVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSL-----KDYFLKKGLC 208 (290)
T ss_dssp HHHHHHHHHTT--------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGH-----HHHHHHHHHH
T ss_pred HHHHHHHHhcC--------chhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhH-----HHHHHHHHHH
Confidence 88887654331 1112255788999999999999999999999999887764321110 0111234777
Q ss_pred HhhCcCHHHHHHHHHHhhccCCCCHH-----HHHHHHHHHHH--hCCHHHHHHHHHHHHHhC
Q 005108 490 LFKSERFTEACQAYGEGLRFDPSNSV-----LYCNRAACWFK--LGQWERSVEDSNQALLIQ 544 (714)
Q Consensus 490 ~~~~g~~~~A~~~~~~al~~~p~~~~-----~~~~la~~~~~--~g~~~~A~~~~~~al~~~ 544 (714)
+...++++.|...++++++++|.... ++..+..++.. .+.+++|+..|+++.+++
T Consensus 209 ~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~lD 270 (290)
T d1qqea_ 209 QLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLD 270 (290)
T ss_dssp HHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCC
T ss_pred HHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcC
Confidence 77888888888888888888775432 22333333332 234555555555544443
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.66 E-value=3.9e-17 Score=177.50 Aligned_cols=231 Identities=11% Similarity=-0.061 Sum_probs=130.6
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC
Q 005108 259 GEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQ 338 (714)
Q Consensus 259 ~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~ 338 (714)
-+|+++|++|+++.|+.+.+++++|.++...+++++| |++++..+|+....+.....+. ...|..+++.+++..+
T Consensus 3 ~eA~q~~~qA~~l~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~~a~~~~~e~~Lw--~~~y~~~ie~~r~~~k 77 (497)
T d1ya0a1 3 LQSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVEQDLW--NHAFKNQITTLQGQAK 77 (497)
T ss_dssp HHHHHHHHHHHHHHGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHCHHHHHHHTHHHHHH--HHHTHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcChhhHHHHhHHHHHH--HHHHHHHHHHHHHhcc
Confidence 3799999999999999999999999999999999887 8999999998776654443332 1235566777766654
Q ss_pred CC-ChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCC
Q 005108 339 QA-DPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEP 417 (714)
Q Consensus 339 ~~-~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 417 (714)
.. .+........+ +.......+.|+.++..+.+++..+|+. ...+..+|..+...+++++|+..+++++..++
T Consensus 78 ~~~~~~~~~~~~~~-----~~~l~~a~~~Y~~ai~~l~~~~~l~~~~-~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~ 151 (497)
T d1ya0a1 78 NRANPNRSEVQANL-----SLFLEAASGFYTQLLQELCTVFNVDLPC-RVKSSQLGIISNKQTHTSAIVKPQSSSCSYIC 151 (497)
T ss_dssp CSSCTTTTHHHHHH-----HHHHHHHHHHHHHHHHHHTC--------------------------------CCHHHHHHH
T ss_pred cccCccHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHCCChhh-HHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCH
Confidence 22 11111111111 1122334455666666666666666553 33344566666677777777666666655443
Q ss_pred CCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHH
Q 005108 418 STVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFT 497 (714)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~ 497 (714)
. .++..+|.++...+++++|+.+|+++++++|++...+..+ |.++...|++.
T Consensus 152 ~----------------~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~L------------g~~~~~~~~~~ 203 (497)
T d1ya0a1 152 Q----------------HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQL------------AILASSKGDHL 203 (497)
T ss_dssp H----------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHH------------HHHHHHTTCHH
T ss_pred H----------------HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHH------------HHHHHHcCCHH
Confidence 2 2456666777777777777777777777777766666655 66666677777
Q ss_pred HHHHHHHHhhccCCCCHHHHHHHHHHHHHhC
Q 005108 498 EACQAYGEGLRFDPSNSVLYCNRAACWFKLG 528 (714)
Q Consensus 498 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 528 (714)
+|+.+|.+++..+|..+.++.+|+.++.+..
T Consensus 204 ~A~~~y~ral~~~~~~~~a~~nL~~~~~~~~ 234 (497)
T d1ya0a1 204 TTIFYYCRSIAVKFPFPAASTNLQKALSKAL 234 (497)
T ss_dssp HHHHHHHHHHSSSBCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHhh
Confidence 7777777777766666666666666665433
|
| >d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: spliceosomal protein U5-15Kd domain: spliceosomal protein U5-15Kd species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.63 E-value=2.8e-16 Score=136.63 Aligned_cols=100 Identities=12% Similarity=0.131 Sum_probs=84.0
Q ss_pred eeeehhhhHHhhhccC--CCceEEEeecCCCccccccchHHHHHHhhCCC-cEEEEEecccCcchhhhCCccccceEEEE
Q 005108 612 VEEVSSLEQFRAAVSL--PGVSVVHFKSASNLHCKQISPYVETLCGRYPS-INFLKVDIDESPGVAHAENVRIVPTFKIY 688 (714)
Q Consensus 612 ~~~i~~~e~~~~~i~~--~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~-~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~ 688 (714)
...+.+..++++++.. .++++|+||++||++|+++.|.++++..++++ +.|++||+|+++++++.|+|+++||+++|
T Consensus 4 l~~l~s~~~~dq~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~VDvd~~~~la~~~~I~~~PT~~~f 83 (137)
T d1qgva_ 4 LPHLHNGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEVPDFNKMYELYDPCTVMFF 83 (137)
T ss_dssp SCBCCSHHHHHHHHHTCSSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTCCTTTTSSCSCSSCEEEEE
T ss_pred ccccCCHHHHHHHHHhCCCCEEEEEEECCCCccchhcChHHHHHHHHhhccceEEEeeccccchhhhhcCeeeEEEEEEE
Confidence 3456667778877743 55999999999999999999999999999987 89999999999999999999999999999
Q ss_pred eCCeEEEEEcCC-----------CHHHHHHHHhh
Q 005108 689 KNGSRMKEIVCP-----------SRDMLEHSVRH 711 (714)
Q Consensus 689 ~~G~~~~~~~g~-----------~~~~l~~~~~~ 711 (714)
++|+.+....|. +.+++.+.|+.
T Consensus 84 ~~g~~i~~~~g~~~~~k~~~~l~~~~~~i~~ie~ 117 (137)
T d1qgva_ 84 FRNKHIMIDLGTGNNNKINWAMEDKQEMVDIIET 117 (137)
T ss_dssp ETTEEEEEECC------CCSCCSCHHHHHHHHHH
T ss_pred eCCcEEEEEecCCCcceeeeehhhhHHHHHHHHH
Confidence 999999655542 55666665553
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.62 E-value=2.1e-14 Score=145.67 Aligned_cols=239 Identities=10% Similarity=-0.054 Sum_probs=192.5
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHH
Q 005108 293 GEAVKECEEAVRLDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALR 372 (714)
Q Consensus 293 ~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~ 372 (714)
+.+...|++|+...|.++..|+..+..+...++..... +......+..++|..
T Consensus 33 ~Rv~~vyerAl~~~~~~~~lW~~y~~~~~~~~~~~~~~---------------------------~~~~~~~~~~~~a~~ 85 (308)
T d2onda1 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEK---------------------------GDMNNAKLFSDEAAN 85 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHT---------------------------SCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCchHHHH---------------------------HHHhhcccchHHHHH
Confidence 44566778888877888887777766554432211110 001122345567788
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHH
Q 005108 373 EGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFEN 452 (714)
Q Consensus 373 ~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 452 (714)
.|+++++..+.....++...+..+..+|++++|...|+++++..|.+. ..+|...+......+++++
T Consensus 86 i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~-------------~~~w~~~~~~~~~~~~~~~ 152 (308)
T d2onda1 86 IYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDP-------------TLVYIQYMKFARRAEGIKS 152 (308)
T ss_dssp HHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCT-------------HHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCCh-------------HHHHHHHHHHHHHcCChHH
Confidence 889998765555778888899999999999999999999999988761 4578889999999999999
Q ss_pred HHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHH-hhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHH
Q 005108 453 AVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDL-FKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWE 531 (714)
Q Consensus 453 A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~-~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 531 (714)
|.++|+++++..|.....+... +... ...|+.+.|..+|+++++.+|+++.+|..++..+...|+++
T Consensus 153 ar~i~~~al~~~~~~~~~~~~~------------a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~ 220 (308)
T d2onda1 153 GRMIFKKAREDARTRHHVYVTA------------ALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDN 220 (308)
T ss_dssp HHHHHHHHHTSTTCCTHHHHHH------------HHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHH------------HHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChH
Confidence 9999999999999999887755 5543 45689999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCC----HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHH
Q 005108 532 RSVEDSNQALLIQPNY----TKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNE 583 (714)
Q Consensus 532 ~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~ 583 (714)
+|..+|+++++..|.+ ...|..........|+.+.+.+.++++.++.|++..
T Consensus 221 ~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~~~ 276 (308)
T d2onda1 221 NTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYE 276 (308)
T ss_dssp HHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTS
T ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCccccc
Confidence 9999999999977644 346777777778889999999999999999998754
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.62 E-value=4e-15 Score=127.22 Aligned_cols=112 Identities=14% Similarity=0.165 Sum_probs=106.6
Q ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHH
Q 005108 436 TFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSV 515 (714)
Q Consensus 436 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~ 515 (714)
-+...|..++..|++++|+..|+++++.+|+++.+|..+ |.++...|++++|+..|+++++++|+++.
T Consensus 5 ~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~------------a~~~~~~~~~~~A~~~~~~al~~~p~~~~ 72 (117)
T d1elwa_ 5 ELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNR------------SAAYAKKGDYQKAYEDGCKTVDLKPDWGK 72 (117)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH------------HHHHHHHTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcc------------cccccccccccccchhhhhHHHhccchhh
Confidence 466789999999999999999999999999999999876 99999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 005108 516 LYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNS 559 (714)
Q Consensus 516 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 559 (714)
+|+++|.++..+|++++|+..|+++++++|+++.++..++.+..
T Consensus 73 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~l~~ 116 (117)
T d1elwa_ 73 GYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA 116 (117)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999887754
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.62 E-value=9.2e-15 Score=132.61 Aligned_cols=126 Identities=17% Similarity=0.205 Sum_probs=114.1
Q ss_pred hhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCC
Q 005108 432 SEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDP 511 (714)
Q Consensus 432 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p 511 (714)
..+..+...|..++..|+|++|+.+|+++++++|++...|..+ |.++...|++++|+..|+++++++|
T Consensus 8 ~~a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~l------------g~~~~~~~~~~~A~~~~~kal~~~p 75 (159)
T d1a17a_ 8 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNR------------SLAYLRTECYGYALGDATRAIELDK 75 (159)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhh------------HHHHHhccccchHHHHHHHHHHHcc
Confidence 3466788899999999999999999999999999999999876 9999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--hccHHHHHH
Q 005108 512 SNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSK--LEKWADAVR 569 (714)
Q Consensus 512 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~--~g~~~eA~~ 569 (714)
++..+|..+|.++..+|++++|+.+|+++++++|++..++..++.+... .+.+++|+.
T Consensus 76 ~~~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~ 135 (159)
T d1a17a_ 76 KYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIA 135 (159)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999888777543 344555544
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.61 E-value=8.6e-15 Score=137.13 Aligned_cols=133 Identities=16% Similarity=0.245 Sum_probs=119.5
Q ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCC
Q 005108 434 AYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSN 513 (714)
Q Consensus 434 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~ 513 (714)
+..++..|..+...|+|++|++.|+++ .+.++.+|+.+ |.+|..+|++++|+++|+++++++|++
T Consensus 5 ~~~l~~~g~~~~~~~d~~~Al~~~~~i---~~~~~~~~~nl------------G~~~~~~g~~~~A~~~~~kAl~ldp~~ 69 (192)
T d1hh8a_ 5 AISLWNEGVLAADKKDWKGALDAFSAV---QDPHSRICFNI------------GCMYTILKNMTEAEKAFTRSINRDKHL 69 (192)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTS---SSCCHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhc---CCCCHHHHHHH------------HHHHHHcCCchhHHHHHHHHHHHhhhh
Confidence 445667899999999999999999864 45667777654 999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC----------------HHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Q 005108 514 SVLYCNRAACWFKLGQWERSVEDSNQALLIQPNY----------------TKALLRRAASNSKLEKWADAVRDFEVLRRE 577 (714)
Q Consensus 514 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----------------~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 577 (714)
+.+|+++|.+|.++|++++|++.|++++...+.+ .++++++|.++.++|++++|++.|++++++
T Consensus 70 ~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~ 149 (192)
T d1hh8a_ 70 AVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 149 (192)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred hhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999865542 478899999999999999999999999999
Q ss_pred CCCC
Q 005108 578 LPDD 581 (714)
Q Consensus 578 ~p~~ 581 (714)
.|+.
T Consensus 150 ~~~~ 153 (192)
T d1hh8a_ 150 KSEP 153 (192)
T ss_dssp CCSG
T ss_pred CCCc
Confidence 8874
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.61 E-value=6.5e-15 Score=148.06 Aligned_cols=221 Identities=14% Similarity=0.051 Sum_probs=165.0
Q ss_pred hHHHHHcCCHHHHHHHHHHHHHcCC-----CCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhh
Q 005108 358 CTDARKVGDWKSALREGDAAIAAGA-----DFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLS 432 (714)
Q Consensus 358 a~~~~~~g~~~~Al~~~~~al~~~p-----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 432 (714)
+.+|...++|++|+..|.+++.+.. ......+..+|.+|.++|++++|+++|++++++.+... ....
T Consensus 44 a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~--------~~~~ 115 (290)
T d1qqea_ 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRG--------QFRR 115 (290)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--------CHHH
T ss_pred HHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcc--------cchh
Confidence 5668899999999999999998732 22345678899999999999999999999998766541 1222
Q ss_pred hHHHHHHHHHHHHH-hCcHHHHHHHHHHHhccCCCC---HHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhc
Q 005108 433 EAYTFFVRAQIEMA-LGRFENAVTAAEKAGQIDPRN---VEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLR 508 (714)
Q Consensus 433 ~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~ 508 (714)
...++..+|.++.. .|++++|+++|++++++.+.. ..... .+..+|.++...|+|++|+..|++++.
T Consensus 116 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~---------~~~~la~~~~~~g~y~~A~~~~~~~~~ 186 (290)
T d1qqea_ 116 GANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNK---------CFIKCADLKALDGQYIEASDIYSKLIK 186 (290)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhh---------HHHHHHHHHHHcChHHHHHHHHHHHHH
Confidence 35678888988865 699999999999998764332 22211 233569999999999999999999999
Q ss_pred cCCCCH-------HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHH-----HHHHHHHHHHH--hccHHHHHHHHHHH
Q 005108 509 FDPSNS-------VLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTK-----ALLRRAASNSK--LEKWADAVRDFEVL 574 (714)
Q Consensus 509 ~~p~~~-------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-----~~~~la~~~~~--~g~~~eA~~~~~~a 574 (714)
..+.+. ..+...+.++...|+++.|...++++++++|.... .+..+..++.. .+++++|+..|+++
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~ 266 (290)
T d1qqea_ 187 SSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (290)
T ss_dssp TTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred hCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 877653 56778899999999999999999999999886543 34455555544 45699999999887
Q ss_pred HHhCCCCHHHHHHHHHHHHHhhhh
Q 005108 575 RRELPDDNEIAESLFHAQVSLKKS 598 (714)
Q Consensus 575 l~~~p~~~~~~~~L~~~~~~l~~~ 598 (714)
.+++ +.....|.++...+.++
T Consensus 267 ~~lD---~~~~~~L~~~k~~le~~ 287 (290)
T d1qqea_ 267 MRLD---KWKITILNKIKESIQQQ 287 (290)
T ss_dssp SCCC---HHHHHHHHHHHHHHHHH
T ss_pred hhcC---HHHHHHHHHHHHhhccc
Confidence 7765 44444555555555443
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=99.61 E-value=1.1e-14 Score=130.94 Aligned_cols=120 Identities=23% Similarity=0.288 Sum_probs=108.8
Q ss_pred HHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCC----------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 005108 479 LVARARARGNDLFKSERFTEACQAYGEGLRFDPSN----------------SVLYCNRAACWFKLGQWERSVEDSNQALL 542 (714)
Q Consensus 479 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~----------------~~~~~~la~~~~~~g~~~~A~~~~~~al~ 542 (714)
.+..++..|..+++.|+|++|+..|++++++.+.. ..++.++|.||.++|++++|+++|+++++
T Consensus 16 ~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~ 95 (153)
T d2fbna1 16 SAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLK 95 (153)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhcccc
Confidence 34455677999999999999999999999875532 24788999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhh
Q 005108 543 IQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAESLFHAQVSLKKS 598 (714)
Q Consensus 543 ~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~L~~~~~~l~~~ 598 (714)
++|++..+|+++|.+|..+|++++|+.+|+++++++|++.++...+..+...+++.
T Consensus 96 ~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~kl~~~ 151 (153)
T d2fbna1 96 IDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEA 151 (153)
T ss_dssp HSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999888877654
|
| >d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: HyaE-like domain: Hydrogenase-1 operon protein HyaE species: Escherichia coli [TaxId: 562]
Probab=99.61 E-value=3.1e-16 Score=135.56 Aligned_cols=94 Identities=12% Similarity=0.151 Sum_probs=83.6
Q ss_pred hHHhhhccC--CCceEEEeecCCCccccccchHHHHHHhhCCC--cEEEEEecccCcchhhhCCccccceEEEEeCCeEE
Q 005108 619 EQFRAAVSL--PGVSVVHFKSASNLHCKQISPYVETLCGRYPS--INFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRM 694 (714)
Q Consensus 619 e~~~~~i~~--~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~--~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~ 694 (714)
..|+..+.. .++++++||++||++|+.+.|.|.++..++++ +.+++||+|+++++++.|+|.++||+++|++|+.+
T Consensus 25 ~~~d~~~~~~~~~vVll~f~a~wCp~C~~~~pvl~ela~~~~~~~~~~a~Vd~d~~~~la~~~~V~~~PT~~~~~~G~~v 104 (132)
T d2hfda1 25 SRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEAIGDRFGVFRFPATLVFTGGNYR 104 (132)
T ss_dssp HHHHHHHHHCSEEEEEECSCCSCCSSSSCCTHHHHHHHTTCTTSCEEEEEECHHHHHHHHHHHTCCSCCEEEEEETTEEE
T ss_pred ccHHHHHHhCCCcEEEEEeeCCCChhHHHHHHHHHHHHHHccCCcceeEEEEecCCHHHHHhhccCcceeEEEEEcCcEe
Confidence 444444433 35788999999999999999999999999987 56789999999999999999999999999999999
Q ss_pred EEEcCC-CHHHHHHHHhhh
Q 005108 695 KEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 695 ~~~~g~-~~~~l~~~~~~~ 712 (714)
.++.|. +.++|.++|+.+
T Consensus 105 ~~~~G~~~~~~l~~~i~~l 123 (132)
T d2hfda1 105 GVLNGIHPWAELINLMRGL 123 (132)
T ss_dssp EEECCCSCHHHHHHHHHHH
T ss_pred eeecCCCCHHHHHHHHHHH
Confidence 999999 999999999865
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.59 E-value=1.1e-14 Score=133.42 Aligned_cols=121 Identities=21% Similarity=0.323 Sum_probs=110.2
Q ss_pred HHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCC---------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Q 005108 479 LVARARARGNDLFKSERFTEACQAYGEGLRFDPSN---------------SVLYCNRAACWFKLGQWERSVEDSNQALLI 543 (714)
Q Consensus 479 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 543 (714)
.+..++..|..+++.|+|++|+..|++++++.|.. ..+|.++|.||.++|+|++|+.++++++++
T Consensus 12 ~a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~ 91 (170)
T d1p5qa1 12 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 91 (170)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhc
Confidence 34556678999999999999999999999987653 367888999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhc
Q 005108 544 QPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAESLFHAQVSLKKSR 599 (714)
Q Consensus 544 ~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~L~~~~~~l~~~~ 599 (714)
+|+++.+++.+|.+|..+|++++|+.+|+++++++|+++.+...+..+...++...
T Consensus 92 ~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~ 147 (170)
T d1p5qa1 92 DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQL 147 (170)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998877766544
|
| >d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: HyaE-like domain: Hydrogenase-1 operon protein HyaE species: Salmonella typhimurium [TaxId: 90371]
Probab=99.59 E-value=5.1e-16 Score=131.96 Aligned_cols=85 Identities=15% Similarity=0.216 Sum_probs=72.3
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhCCC--cEEEEEecccCcchhhhCCccccceEEEEeCCeEEEEEcCC-CHHH
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRYPS--INFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKEIVCP-SRDM 704 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~--~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~~~~g~-~~~~ 704 (714)
.+++++.|+++||++|+.+.|.+.+|..+|++ +.+++||+|+.+++++.|+|+++||+++|+||+.+.++.|. +.++
T Consensus 30 ~~~vll~f~a~wCp~C~~~~pvl~eL~~~~~~~~~~~~~Vd~d~~~~l~~~~~V~~~Pt~~~~~~G~~v~~~~G~~~~~~ 109 (119)
T d2es7a1 30 DGVILLSSDPRRTPEVSDNPVMIAELLREFPQFDWQVAVADLEQSEAIGDRFNVRRFPATLVFTDGKLRGALSGIHPWAE 109 (119)
T ss_dssp SEEEEECCCSCC----CCHHHHHHHHHHTCTTSCCEEEEECHHHHHHHHHTTTCCSSSEEEEESCC----CEESCCCHHH
T ss_pred CcEEEEeecCCCCccHHHHHHHHHHHHHhcCCCceEEEEEECCCCHHHHHhcCcCcceEEEEEEcCeEEEEeeCCCCHHH
Confidence 45888999999999999999999999999986 77889999999999999999999999999999999999999 9999
Q ss_pred HHHHHhhh
Q 005108 705 LEHSVRHY 712 (714)
Q Consensus 705 l~~~~~~~ 712 (714)
|.+.|+.+
T Consensus 110 l~~~i~~l 117 (119)
T d2es7a1 110 LLTLMRSI 117 (119)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999875
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.59 E-value=4e-16 Score=169.43 Aligned_cols=231 Identities=11% Similarity=-0.025 Sum_probs=148.0
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHH
Q 005108 293 GEAVKECEEAVRLDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALR 372 (714)
Q Consensus 293 ~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~ 372 (714)
-+|+++|++|+++.|+..++++++|.++..++++++| |++++. .++..... ..++..+ -...|..+++
T Consensus 3 ~eA~q~~~qA~~l~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~-~dp~~a~~-~~~e~~L-------w~~~y~~~ie 70 (497)
T d1ya0a1 3 LQSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLV-TDLEYALD-KKVEQDL-------WNHAFKNQIT 70 (497)
T ss_dssp HHHHHHHHHHHHHHGGGTCSSSCSSSSHHHHHHHHHH---HHHHHH-HCHHHHHH-HTHHHHH-------HHHHTHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHhhHHHHHHHHchHHHH---HHHHHH-cChhhHHH-HhHHHHH-------HHHHHHHHHH
Confidence 3799999999999999999999999999999999887 666653 12211110 0111111 0112456677
Q ss_pred HHHHHHHcCC--CCCHHHHHHHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcH
Q 005108 373 EGDAAIAAGA--DFSPQLSMCRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRF 450 (714)
Q Consensus 373 ~~~~al~~~p--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 450 (714)
.+++.++... +........++.++...+.|+.|+..+.+++.++|.+ ...+..+|..+...+++
T Consensus 71 ~~r~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~~~--------------~~~~~~lg~~~~~~~~~ 136 (497)
T d1ya0a1 71 TLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPC--------------RVKSSQLGIISNKQTHT 136 (497)
T ss_dssp HHHHHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC---------------------------------------
T ss_pred HHHHhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCChhh--------------HHHHHHhHHHHHhCCCH
Confidence 7777765542 3333333345667777888899999999998888887 67788899999999999
Q ss_pred HHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCH
Q 005108 451 ENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQW 530 (714)
Q Consensus 451 ~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 530 (714)
++|+..+++++..++. .++. .+|.++...+++++|+.+|++|++++|++...|+++|.++...|++
T Consensus 137 ~~A~~~~~~al~~~~~--~~~~------------~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~ 202 (497)
T d1ya0a1 137 SAIVKPQSSSCSYICQ--HCLV------------HLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDH 202 (497)
T ss_dssp ------CCHHHHHHHH--HHHH------------HHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhCCCHH--HHHH------------HHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCH
Confidence 9999988888876542 2332 3488899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcc
Q 005108 531 ERSVEDSNQALLIQPNYTKALLRRAASNSKLEK 563 (714)
Q Consensus 531 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 563 (714)
.+|+.+|.+++.++|.++.++.+|+.++.+..+
T Consensus 203 ~~A~~~y~ral~~~~~~~~a~~nL~~~~~~~~~ 235 (497)
T d1ya0a1 203 LTTIFYYCRSIAVKFPFPAASTNLQKALSKALE 235 (497)
T ss_dssp HHHHHHHHHHHSSSBCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhh
Confidence 999999999999999999999999888866543
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.59 E-value=1.7e-13 Score=138.81 Aligned_cols=224 Identities=8% Similarity=-0.061 Sum_probs=181.8
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHH
Q 005108 258 FGEALSMYDKAISLAPRNAAFRSNRAAALTGL--------------GRIGEAVKECEEAVRL-DPNYWRAHQRLGSLLVR 322 (714)
Q Consensus 258 ~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~--------------g~~~~A~~~~~~al~~-~p~~~~a~~~la~~~~~ 322 (714)
.+.+...|++|+...|.++.+|+..+..+... +..++|...|+++++. .|.+...|..++.++..
T Consensus 32 ~~Rv~~vyerAl~~~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~ 111 (308)
T d2onda1 32 TKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence 46688899999999999999999887765433 3357788888888864 67777777777777777
Q ss_pred cCCHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 005108 323 LGQVENARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQL 402 (714)
Q Consensus 323 ~g~~~~A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~ 402 (714)
+|++++|...| +++++..|.....++...+....+.+++
T Consensus 112 ~~~~~~a~~i~-----------------------------------------~~~l~~~~~~~~~~w~~~~~~~~~~~~~ 150 (308)
T d2onda1 112 RMKYEKVHSIY-----------------------------------------NRLLAIEDIDPTLVYIQYMKFARRAEGI 150 (308)
T ss_dssp TTCHHHHHHHH-----------------------------------------HHHHTSSSSCTHHHHHHHHHHHHHHHCH
T ss_pred cccHHHHHHHH-----------------------------------------HHHHHHhcCChHHHHHHHHHHHHHcCCh
Confidence 77666666655 4455555555555677788888999999
Q ss_pred HHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHH-hCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHH
Q 005108 403 EDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMA-LGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVA 481 (714)
Q Consensus 403 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~ 481 (714)
+.|.++|+++++..|.+ ...+...+..... .|+.+.|..+|+++++..|++...|..+
T Consensus 151 ~~ar~i~~~al~~~~~~--------------~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y------- 209 (308)
T d2onda1 151 KSGRMIFKKAREDARTR--------------HHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAY------- 209 (308)
T ss_dssp HHHHHHHHHHHTSTTCC--------------THHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHH-------
T ss_pred HHHHHHHHHHHHhCCCc--------------HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHH-------
Confidence 99999999999999988 5567777766544 5889999999999999999999999877
Q ss_pred HHHHHHhHHhhCcCHHHHHHHHHHhhccCCCC----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH
Q 005108 482 RARARGNDLFKSERFTEACQAYGEGLRFDPSN----SVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYT 548 (714)
Q Consensus 482 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 548 (714)
+..+...|++++|..+|+++++..|.+ ..+|..........|+.+.+.++++++.++.|+..
T Consensus 210 -----~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~~ 275 (308)
T d2onda1 210 -----IDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY 275 (308)
T ss_dssp -----HHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTT
T ss_pred -----HHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcccc
Confidence 888999999999999999999987654 35777778888889999999999999999988764
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=2e-14 Score=134.61 Aligned_cols=147 Identities=14% Similarity=0.069 Sum_probs=124.9
Q ss_pred HHHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHH
Q 005108 391 CRVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEV 470 (714)
Q Consensus 391 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 470 (714)
+.|..+...|+|++|++.|.++ .+.+ +.+|+++|.+|..+|++++|++.|+++++++|+++.+
T Consensus 10 ~~g~~~~~~~d~~~Al~~~~~i---~~~~--------------~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a 72 (192)
T d1hh8a_ 10 NEGVLAADKKDWKGALDAFSAV---QDPH--------------SRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVA 72 (192)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTS---SSCC--------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHhc---CCCC--------------HHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhh
Confidence 4799999999999999999875 3344 6689999999999999999999999999999999999
Q ss_pred HHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCC----------------HHHHHHHHHHHHHhCCHHHHH
Q 005108 471 AVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSN----------------SVLYCNRAACWFKLGQWERSV 534 (714)
Q Consensus 471 ~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~----------------~~~~~~la~~~~~~g~~~~A~ 534 (714)
|..+ |.++.++|++++|+..|++++...+.+ ..+++++|.++.++|++++|+
T Consensus 73 ~~~~------------g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~ 140 (192)
T d1hh8a_ 73 YFQR------------GMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAE 140 (192)
T ss_dssp HHHH------------HHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHH------------HHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHH
Confidence 9866 999999999999999999999865543 478899999999999999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Q 005108 535 EDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRREL 578 (714)
Q Consensus 535 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 578 (714)
+.|++++++.|+. .....++|+..+.+.....
T Consensus 141 ~~l~~A~~~~~~~------------~~~~~~~Al~~~~~~~~~~ 172 (192)
T d1hh8a_ 141 EQLALATSMKSEP------------RHSKIDKAMECVWKQKLYE 172 (192)
T ss_dssp HHHHHHHTTCCSG------------GGGHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHhcCCCc------------chHHHHHHHHHHHhhhhCC
Confidence 9999999999874 3344456666555444333
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.57 E-value=2.3e-15 Score=142.27 Aligned_cols=102 Identities=25% Similarity=0.451 Sum_probs=97.1
Q ss_pred HHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005108 481 ARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSK 560 (714)
Q Consensus 481 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 560 (714)
..++..|+.+++.|+|++|+..|+++++++|.++.+|+++|.||.++|++++|+.+|+++++++|++..+|+++|.+|..
T Consensus 5 ~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~~ 84 (201)
T d2c2la1 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLE 84 (201)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 34557799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccHHHHHHHHHHHHHhCCCCH
Q 005108 561 LEKWADAVRDFEVLRRELPDDN 582 (714)
Q Consensus 561 ~g~~~eA~~~~~~al~~~p~~~ 582 (714)
+|++++|+..|+++++++|++.
T Consensus 85 l~~~~~A~~~~~~al~l~p~~~ 106 (201)
T d2c2la1 85 MESYDEAIANLQRAYSLAKEQR 106 (201)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHhCcccH
Confidence 9999999999999999987543
|
| >d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: MJ0307, thioredoxin/glutaredoxin-like protein species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.56 E-value=1.7e-15 Score=121.15 Aligned_cols=81 Identities=20% Similarity=0.338 Sum_probs=73.7
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhCCC-cEEEEEecccCcchhhhCCccccceEEEEeCCeEEEEEcCC-CHHHH
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRYPS-INFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKEIVCP-SRDML 705 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~-~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~~~~g~-~~~~l 705 (714)
.++.++.||++||++|+.+.|.++++...+++ +.++.+|.++.++++++|+|+++||++++++|+ ++|. +.+.|
T Consensus 2 ~kv~v~~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~d~~~~la~~~~V~~~Pt~~i~~~g~----~~G~~~~~~l 77 (85)
T d1fo5a_ 2 SKVKIELFTSPMCPHCPAAKRVVEEVANEMPDAVEVEYINVMENPQKAMEYGIMAVPTIVINGDVE----FIGAPTKEAL 77 (85)
T ss_dssp CCEEEEEEECCCSSCCCTHHHHHHHHHHHCSSSEEEEEEESSSSCCTTTSTTTCCSSEEEETTEEE----CCSSSSSHHH
T ss_pred CceEEEEEECCCCcChHhhhhhccccccccccccccccccccccccccccCCceEeeEEEEECCcE----EECCCCHHHH
Confidence 35778999999999999999999999999975 889999999999999999999999999988875 5688 99999
Q ss_pred HHHHhhh
Q 005108 706 EHSVRHY 712 (714)
Q Consensus 706 ~~~~~~~ 712 (714)
+++|+++
T Consensus 78 ~~~i~~~ 84 (85)
T d1fo5a_ 78 VEAIKKR 84 (85)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 9999875
|
| >d1a8la2 c.47.1.2 (A:120-226) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.56 E-value=5.3e-15 Score=124.17 Aligned_cols=83 Identities=20% Similarity=0.141 Sum_probs=74.9
Q ss_pred ceEEEeecCCCccccccchHHHHHHhhC-----CCcEEEEEecccCcchhhhCCccccceEEEEeCCeEEEEEcCC-CHH
Q 005108 630 VSVVHFKSASNLHCKQISPYVETLCGRY-----PSINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKEIVCP-SRD 703 (714)
Q Consensus 630 ~~vv~f~a~~c~~C~~~~p~l~~l~~~~-----~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~~~~g~-~~~ 703 (714)
+.++.||++||++|+.+.|.++++..+. ..+.+..+|+++.++++++|+|+++||++++++|+.+.++.|. +.+
T Consensus 17 v~i~~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~v~~~~id~~~~~~l~~~~~V~~vPTi~i~~~G~~~~~~~G~~~~~ 96 (107)
T d1a8la2 17 VRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEYPEWADQYNVMAVPKIVIQVNGEDRVEFEGAYPEK 96 (107)
T ss_dssp EEEEEEECSSCTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEEGGGCHHHHHHTTCCSSCEEEEEETTEEEEEEESCCCHH
T ss_pred eEEEEEEcCccccchhhChhHHhhhhhhhhccCCcEEEEEeccccccccccccccccceEEEEEeCCeEEEEEECCCCHH
Confidence 5567899999999999999999986542 3488999999999999999999999999999999999999999 999
Q ss_pred HHHHHHhhh
Q 005108 704 MLEHSVRHY 712 (714)
Q Consensus 704 ~l~~~~~~~ 712 (714)
+++++|.+.
T Consensus 97 ~~~~~i~~a 105 (107)
T d1a8la2 97 MFLEKLLSA 105 (107)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999998763
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.55 E-value=2.7e-14 Score=130.91 Aligned_cols=119 Identities=29% Similarity=0.501 Sum_probs=108.2
Q ss_pred HHHHHHhHHhhCcCHHHHHHHHHHhhcc----------------CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Q 005108 482 RARARGNDLFKSERFTEACQAYGEGLRF----------------DPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQP 545 (714)
Q Consensus 482 ~~~~~g~~~~~~g~~~~A~~~~~~al~~----------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 545 (714)
.+...|..++..|+|++|+..|++++++ +|....++.++|.+|.++|+|++|+..|+++++++|
T Consensus 29 ~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p 108 (169)
T d1ihga1 29 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP 108 (169)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhh
Confidence 3445699999999999999999999864 355677899999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhcc
Q 005108 546 NYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAESLFHAQVSLKKSRG 600 (714)
Q Consensus 546 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~L~~~~~~l~~~~~ 600 (714)
+++.+|+++|.+|..+|++++|+..|+++++++|++.++...|..+...++....
T Consensus 109 ~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~~~ 163 (169)
T d1ihga1 109 SNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKD 163 (169)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998887766543
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=99.54 E-value=5e-14 Score=128.86 Aligned_cols=122 Identities=23% Similarity=0.391 Sum_probs=109.2
Q ss_pred HHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCC---------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 005108 478 KLVARARARGNDLFKSERFTEACQAYGEGLRFDPSN---------------SVLYCNRAACWFKLGQWERSVEDSNQALL 542 (714)
Q Consensus 478 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~la~~~~~~g~~~~A~~~~~~al~ 542 (714)
..+..++..|..+++.|+|++|+..|++++...+.. ..++.++|.||.++|++++|+.+++++++
T Consensus 13 ~~a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~ 92 (168)
T d1kt1a1 13 EQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG 92 (168)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhh
Confidence 344556678999999999999999999999754332 35688999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhhhc
Q 005108 543 IQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAESLFHAQVSLKKSR 599 (714)
Q Consensus 543 ~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~L~~~~~~l~~~~ 599 (714)
++|++..+++++|.+|..+|++++|+.+|+++++++|++.++...+..+...+.+..
T Consensus 93 l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~ 149 (168)
T d1kt1a1 93 LDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHN 149 (168)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHH
Confidence 999999999999999999999999999999999999999999999998887776543
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.54 E-value=5.8e-14 Score=121.95 Aligned_cols=116 Identities=26% Similarity=0.373 Sum_probs=102.9
Q ss_pred HHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH-------HHHH
Q 005108 480 VARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYT-------KALL 552 (714)
Q Consensus 480 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-------~~~~ 552 (714)
+..++++|+.++..|+|++|+.+|+++++++|++..++.++|.+|.++|+|++|+.+|+++++++|++. .++.
T Consensus 4 a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~ 83 (128)
T d1elra_ 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (128)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 455667899999999999999999999999999999999999999999999999999999999988764 4677
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Q 005108 553 RRAASNSKLEKWADAVRDFEVLRRELPDDNEIAESLFHAQVSLK 596 (714)
Q Consensus 553 ~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~L~~~~~~l~ 596 (714)
.+|.++..++++++|+++|++++..+++ +++...+..+...++
T Consensus 84 ~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l~~~~k~lk 126 (128)
T d1elra_ 84 RIGNSYFKEEKYKDAIHFYNKSLAEHRT-PDVLKKCQQAEKILK 126 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHh
Confidence 7888889999999999999999999864 677777777665554
|
| >d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Phosducin domain: Phosducin species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.54 E-value=1.4e-14 Score=137.13 Aligned_cols=103 Identities=21% Similarity=0.365 Sum_probs=90.7
Q ss_pred cceeeehhhhHHhhhccC---CCceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCcchhhhCCccccceEE
Q 005108 610 GEVEEVSSLEQFRAAVSL---PGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAHAENVRIVPTFK 686 (714)
Q Consensus 610 ~~~~~i~~~e~~~~~i~~---~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~ 686 (714)
|.+..+...+.|..++.. ...+||+||++||++|+.+.|.|..|+.+||++.|++||.+..+ ++..|+|+++|||+
T Consensus 99 G~v~~i~~~~~f~~~v~~~~~~~~Vvvhfy~~~~~~C~~~~~~l~~lA~~~~~vkF~ki~~~~~~-~~~~~~i~~lPtl~ 177 (217)
T d2trcp_ 99 GFVYELETGEQFLETIEKEQKVTTIVVNIYEDGVRGCDALNSSLECLAAEYPMVKFCKIRASNTG-AGDRFSSDVLPTLL 177 (217)
T ss_dssp CSEEECCSHHHHHHHHHHSCTTCEEEEEEECTTSTTHHHHHHHHHHHHTTCTTSEEEEEEHHHHT-CSTTSCGGGCSEEE
T ss_pred CeEEEcCCHHHHHHHHHhcCCCCeEEEEEEcCCCCChhhhhhhHHHHhhhcccceEEEEccccch-hHHhCCCCCCCeEE
Confidence 467778877888877743 23689999999999999999999999999999999999999876 66899999999999
Q ss_pred EEeCCeEEEEEcCC--------CHHHHHHHHhhhc
Q 005108 687 IYKNGSRMKEIVCP--------SRDMLEHSVRHYS 713 (714)
Q Consensus 687 ~~~~G~~~~~~~g~--------~~~~l~~~~~~~~ 713 (714)
+|+||+.+.+++|+ +.+.|+.+|.+++
T Consensus 178 ~yk~G~~v~~~vg~~~~~g~~~~~~~lE~~L~~~g 212 (217)
T d2trcp_ 178 VYKGGELISNFISVAEQFAEDFFAADVESFLNEYG 212 (217)
T ss_dssp EEETTEEEEEETTGGGGSCSSCCHHHHHHHHHTTT
T ss_pred EEECCEEEEEEECccccccccCCHHHHHHHHHHcC
Confidence 99999999999996 4588999998876
|
| >d2b5ea4 c.47.1.2 (A:23-141) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.53 E-value=4.3e-15 Score=127.07 Aligned_cols=97 Identities=18% Similarity=0.296 Sum_probs=86.9
Q ss_pred hhhHHhhhccCCCceEEEeecCCCccccccchHHHHHHhhCC--CcEEEEEecccCcchhhhCCccccceEEEEeCCeEE
Q 005108 617 SLEQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYP--SINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRM 694 (714)
Q Consensus 617 ~~e~~~~~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~--~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~ 694 (714)
+.+.|.+++...+.++|.||++||++|+.+.|.++++...+. ++.|+.||++++.+++.+|+|.++||+++|++|+..
T Consensus 16 t~~~f~~~i~~~~~~lV~fya~wC~~C~~~~~~~~~la~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~~f~~g~~~ 95 (119)
T d2b5ea4 16 ATDSFNEYIQSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKNITLAQIDCTENQDLCMEHNIPGFPSLKIFKNSDVN 95 (119)
T ss_dssp CTTTHHHHHTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTTCEEEEEETTTCHHHHHHTTCCSSSEEEEEETTCTT
T ss_pred CHHHHHHHHhcCCeEEEEEECCccCcccccchhhhhhhhhhcccceeeeeeeccchHHHHHHhccccCCeEEEEECCEEe
Confidence 336688888888899999999999999999999999999884 499999999999999999999999999999999877
Q ss_pred EE--EcCC-CHHHHHHHHhhhc
Q 005108 695 KE--IVCP-SRDMLEHSVRHYS 713 (714)
Q Consensus 695 ~~--~~g~-~~~~l~~~~~~~~ 713 (714)
.+ +.|. +.+.|.++|+++.
T Consensus 96 ~~~~y~g~~~~~~l~~fi~k~~ 117 (119)
T d2b5ea4 96 NSIDYEGPRTAEAIVQFMIKQS 117 (119)
T ss_dssp CEEECCSCCSHHHHHHHHHHHT
T ss_pred eeEEecCCCCHHHHHHHHHHhh
Confidence 65 4577 9999999999864
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.53 E-value=1.9e-14 Score=123.22 Aligned_cols=113 Identities=15% Similarity=0.123 Sum_probs=102.1
Q ss_pred HHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHH---hCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHH
Q 005108 485 ARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFK---LGQWERSVEDSNQALLIQPNY--TKALLRRAASNS 559 (714)
Q Consensus 485 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~ 559 (714)
++++.+...+++++|.+.|+++++++|.++.+++++|.++.+ .+++++|+..|+++++.+|.+ ..+++++|.+|.
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~ 83 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY 83 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Confidence 347788899999999999999999999999999999999987 455668999999999988765 458999999999
Q ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhh
Q 005108 560 KLEKWADAVRDFEVLRRELPDDNEIAESLFHAQVSLKK 597 (714)
Q Consensus 560 ~~g~~~eA~~~~~~al~~~p~~~~~~~~L~~~~~~l~~ 597 (714)
++|++++|+++|+++++++|++.++...+..+...+++
T Consensus 84 ~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~~~~k 121 (122)
T d1nzna_ 84 RLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMKK 121 (122)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999988888777654
|
| >d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.52 E-value=6.4e-15 Score=126.47 Aligned_cols=97 Identities=25% Similarity=0.372 Sum_probs=86.4
Q ss_pred hhhHHhhhccCCCceEEEeecCCCccccccchHHHHHHhhCC----CcEEEEEecccCcchhhhCCccccceEEEEeCCe
Q 005108 617 SLEQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYP----SINFLKVDIDESPGVAHAENVRIVPTFKIYKNGS 692 (714)
Q Consensus 617 ~~e~~~~~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~----~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~ 692 (714)
+.+.|.+++...+.++|+||++||++|+.+.|.++++...+. .+.++.||++..+.++..|+|.++||+++|++|+
T Consensus 13 ~~~~f~~~l~~~k~vlV~Fya~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~G~ 92 (120)
T d1meka_ 13 RKSNFAEALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEESDLAQQYGVRGYPTIKFFRNGD 92 (120)
T ss_dssp CTTTHHHHHHHCSEEEEEEECSSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETTTCCSSHHHHTCCSSSEEEEEESSC
T ss_pred CHHHHHHHHhcCCcEEEEEECCCcCCccccchhhhhhcccccccccceeeeccccccchhHHHHhCCccCCeEEEEECCe
Confidence 447788888888899999999999999999999999998873 4889999999999999999999999999999997
Q ss_pred EEE--EEcCC-CHHHHHHHHhhhc
Q 005108 693 RMK--EIVCP-SRDMLEHSVRHYS 713 (714)
Q Consensus 693 ~~~--~~~g~-~~~~l~~~~~~~~ 713 (714)
.+. ++.|. +.+.|.++|++..
T Consensus 93 ~~~~~~~~g~~~~~~l~~fi~~~~ 116 (120)
T d1meka_ 93 TASPKEYTAGREADDIVNWLKKRT 116 (120)
T ss_dssp SSSCEECCCCSSHHHHHHHHHTTS
T ss_pred EeeeEEecCCCCHHHHHHHHHHhh
Confidence 764 55678 9999999999853
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.52 E-value=3.4e-13 Score=123.36 Aligned_cols=138 Identities=14% Similarity=0.147 Sum_probs=115.4
Q ss_pred hhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHH---HHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhh
Q 005108 431 LSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAV---LLNNVKLVARARARGNDLFKSERFTEACQAYGEGL 507 (714)
Q Consensus 431 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~---~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 507 (714)
+..+..+...|..++..|+|++|+..|++++...|....... ..........+.++|.+|.+.|+|++|+.+++++|
T Consensus 10 ~~~a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al 89 (170)
T d1p5qa1 10 LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKAL 89 (170)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhh
Confidence 345777889999999999999999999999988775422110 00011122345568999999999999999999999
Q ss_pred ccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHH
Q 005108 508 RFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAV 568 (714)
Q Consensus 508 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~ 568 (714)
+++|+++.+|+.+|.+|..+|++++|+.+|+++++++|++..+...++.++.++++..+..
T Consensus 90 ~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e 150 (170)
T d1p5qa1 90 ELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLARE 150 (170)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999988877766554
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.51 E-value=2.1e-14 Score=135.55 Aligned_cols=123 Identities=10% Similarity=0.037 Sum_probs=107.7
Q ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCC
Q 005108 434 AYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSN 513 (714)
Q Consensus 434 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~ 513 (714)
+..+...|..++..|+|++|+..|+++++++|+++.+|..+ |.+|.+.|++++|+.+|+++++++|++
T Consensus 4 a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~l------------g~~y~~~~~~~~Ai~~~~~al~l~p~~ 71 (201)
T d2c2la1 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNR------------ALCYLKMQQPEQALADCRRALELDGQS 71 (201)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHH------------HHHHHHTTCHHHHHHHHHHHTTSCTTC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhH------------HHHHhhhhhhhhhhHHHHHHHHhCCCc
Confidence 56688899999999999999999999999999999999876 999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHH
Q 005108 514 SVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAV 568 (714)
Q Consensus 514 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~ 568 (714)
+.+|+++|.+|..+|++++|+..|+++++++|++...+...+..+....+...+.
T Consensus 72 ~~a~~~lg~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~~ 126 (201)
T d2c2la1 72 VKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWN 126 (201)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHhHHH
Confidence 9999999999999999999999999999998876544444445554444444433
|
| >d1woua_ c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxin containing protein Txnl5) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Txnl5-like domain: Putative 42-9-9 protein (thioredoxin containing protein Txnl5) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.49 E-value=1.1e-14 Score=123.80 Aligned_cols=98 Identities=20% Similarity=0.269 Sum_probs=84.0
Q ss_pred eeehhhhHHhhhccC--CCceEEEeecC-------CCccccccchHHHHHHhhCCC-cEEEEEecc-------cCcchhh
Q 005108 613 EEVSSLEQFRAAVSL--PGVSVVHFKSA-------SNLHCKQISPYVETLCGRYPS-INFLKVDID-------ESPGVAH 675 (714)
Q Consensus 613 ~~i~~~e~~~~~i~~--~~~~vv~f~a~-------~c~~C~~~~p~l~~l~~~~~~-~~~~~vd~d-------~~~~l~~ 675 (714)
..+.+.++|.+++.. +.+++|+|||+ ||++|+.+.|.++++...+++ +.|++||++ .+..++.
T Consensus 4 i~v~~~~e~~~~l~~~~gk~v~v~F~a~~~~~g~sWC~pCk~~~P~~~~l~~~~~~~~~~~~vdv~~~~~~~d~~~~l~~ 83 (119)
T d1woua_ 4 VSVSGFEEFHRAVEQHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISEGCVFIYCQVGEKPYWKDPNNDFRK 83 (119)
T ss_dssp EEEESHHHHHHHHHTTTTSEEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCCTTEEEEEEECCCHHHHHCTTCHHHH
T ss_pred EEeCCHHHHHHHHHHcCCCEEEEEEEecCCCCCCCCChhHHHHHHHHHHHHHhcCCceEEEEEECCCCcccchhhhhHHH
Confidence 456677888887754 34889999995 999999999999999999875 999999985 4566899
Q ss_pred hCCccccceEEEEeCCeEEEEEcCCCHHHHHHHHh
Q 005108 676 AENVRIVPTFKIYKNGSRMKEIVCPSRDMLEHSVR 710 (714)
Q Consensus 676 ~~~v~~~Pt~~~~~~G~~~~~~~g~~~~~l~~~~~ 710 (714)
.|+|.++||+++|++|+++.+..+.+.+.|+.+++
T Consensus 84 ~~~V~~iPT~i~~~~g~~l~~~~~~~~~ll~~~~~ 118 (119)
T d1woua_ 84 NLKVTAVPTLLKYGTPQKLVESECLQANLVEMLFS 118 (119)
T ss_dssp HHCCCSSSEEEETTSSCEEEGGGGGCHHHHHHHHH
T ss_pred hCCeEEEEEEEEEECCeEEeeeecCCHHHHHHHhc
Confidence 99999999999999999998877778888888875
|
| >d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: MTH807, thioredoxin/glutaredoxin-like protein species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.49 E-value=2.8e-14 Score=113.64 Aligned_cols=79 Identities=24% Similarity=0.273 Sum_probs=70.1
Q ss_pred ceEEEeecCCCccccccchHHHHHHhhCCC-cEEEEEecccCcchhhhCCccccceEEEEeCCeEEEEEcCC-CHHHHHH
Q 005108 630 VSVVHFKSASNLHCKQISPYVETLCGRYPS-INFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKEIVCP-SRDMLEH 707 (714)
Q Consensus 630 ~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~-~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~~~~g~-~~~~l~~ 707 (714)
+.++.||++||++|+.+.|.++++..++++ +.|+++|+|+.++++.+|+|+++||+++ +|+. +++|. +.+.|++
T Consensus 3 v~v~~F~a~wC~~C~~~~p~~~~l~~~~~~~v~~~~vd~d~~~~l~~~~~V~~~Pt~~~--~~~~--~~~G~~~~~~l~~ 78 (85)
T d1nhoa_ 3 VNIEVFTSPTCPYCPMAIEVVDEAKKEFGDKIDVEKIDIMVDREKAIEYGLMAVPAIAI--NGVV--RFVGAPSREELFE 78 (85)
T ss_dssp CCEEEESCSSSCCSTTHHHHHHHHHHHHCSSCCEEEECTTTCGGGGGGTCSSCSSEEEE--TTTE--EEECSSCCHHHHH
T ss_pred EEEEEEECCCCcchHHHHHHHhhhcccccccccccccccccchhhHHhcCceEeCEEEE--CCcE--EEEcCCCHHHHHH
Confidence 456679999999999999999999999975 9999999999999999999999999876 5553 46788 9999999
Q ss_pred HHhhh
Q 005108 708 SVRHY 712 (714)
Q Consensus 708 ~~~~~ 712 (714)
+|++.
T Consensus 79 ~i~~~ 83 (85)
T d1nhoa_ 79 AINDE 83 (85)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 99874
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=99.47 E-value=2e-13 Score=115.31 Aligned_cols=91 Identities=13% Similarity=0.101 Sum_probs=88.5
Q ss_pred HHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccH
Q 005108 485 ARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKW 564 (714)
Q Consensus 485 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 564 (714)
.+|..+++.|++++|+..|+++++.+|+++.+|..+|.++.+.|++++|+.+|+++++++|++..+++.+|.+|..+|++
T Consensus 21 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~~ 100 (112)
T d1hxia_ 21 EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNA 100 (112)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCCH
Confidence 34999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 005108 565 ADAVRDFEVLR 575 (714)
Q Consensus 565 ~eA~~~~~~al 575 (714)
++|++.+++.+
T Consensus 101 ~~A~~~l~~~l 111 (112)
T d1hxia_ 101 NAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999999875
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=99.46 E-value=1e-12 Score=117.87 Aligned_cols=133 Identities=12% Similarity=0.041 Sum_probs=111.8
Q ss_pred hhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCH-----HHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHH
Q 005108 430 MLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNV-----EVAVLLNNVKLVARARARGNDLFKSERFTEACQAYG 504 (714)
Q Consensus 430 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~ 504 (714)
.+..+..+...|..++..|+|++|+..|++++.+.+... ..+... ....+..+.++|.+|+++|++++|+.+|+
T Consensus 13 ~~~~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~-~~~~~~~~~Nla~~~~~l~~~~~Al~~~~ 91 (153)
T d2fbna1 13 KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKK-KNIEISCNLNLATCYNKNKDYPKAIDHAS 91 (153)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHH-HHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhh-hhHHHHHHhhHHHHHHHhcccchhhhhhh
Confidence 345567788899999999999999999999997665432 121111 11223455678999999999999999999
Q ss_pred HhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcc
Q 005108 505 EGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEK 563 (714)
Q Consensus 505 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 563 (714)
++++++|.+..+|+.+|.+|..+|++++|+.+|+++++++|++..+...+..+..++++
T Consensus 92 ~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~kl~~ 150 (153)
T d2fbna1 92 KVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKE 150 (153)
T ss_dssp HHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred ccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999888776654
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=99.45 E-value=2.5e-13 Score=114.67 Aligned_cols=94 Identities=15% Similarity=0.069 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Q 005108 244 ELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVRL 323 (714)
Q Consensus 244 ~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~ 323 (714)
.++.+|..+++.|++++|+.+|+++++.+|+++.+|..+|.++..+|++++|+..|+++++++|++..+|+.+|.+|..+
T Consensus 18 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~ 97 (112)
T d1hxia_ 18 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 97 (112)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHC
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHhhc
Q 005108 324 GQVENARRHLCLSG 337 (714)
Q Consensus 324 g~~~~A~~~~~~al 337 (714)
|++++|++.|++.+
T Consensus 98 g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 98 HNANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999998864
|
| >d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein Bta {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Bacterocin transport accessory protein Bta species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.45 E-value=2.9e-14 Score=121.00 Aligned_cols=96 Identities=10% Similarity=0.154 Sum_probs=81.6
Q ss_pred ehhhhHHhhhccCCCceEEEeecCCCccccccchHHHHHHhhCCC-cEEEEEecccC----cchhhhCCccccceEEEEe
Q 005108 615 VSSLEQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYPS-INFLKVDIDES----PGVAHAENVRIVPTFKIYK 689 (714)
Q Consensus 615 i~~~e~~~~~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~-~~~~~vd~d~~----~~l~~~~~v~~~Pt~~~~~ 689 (714)
+.+.+++..++.....++++||++||++|+.+.|.++++..++.. +.++.+|.... .+++..|+|.++||+++|+
T Consensus 13 ~~t~~~~~~~i~~~~~~~v~f~~~~C~~C~~~~p~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~V~~~PTli~~~ 92 (115)
T d1zmaa1 13 VTTVVRAQEALDKKETATFFIGRKTCPYCRKFAGTLSGVVAETKAHIYFINSEEPSQLNDLQAFRSRYGIPTVPGFVHIT 92 (115)
T ss_dssp ECCHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHCCCCEEEETTCGGGHHHHHHHHHHHTCCSSCEEEEEE
T ss_pred eCCHHHHHHHHhcCCCEEEEEcCCCCccHHHHHHHHHHHHHHhhhhhhhheeecccccccccccccccccccccEEEEEE
Confidence 456678888888888999999999999999999999999988853 55554443332 3578899999999999999
Q ss_pred CCeEEEEEcCC-CHHHHHHHHh
Q 005108 690 NGSRMKEIVCP-SRDMLEHSVR 710 (714)
Q Consensus 690 ~G~~~~~~~g~-~~~~l~~~~~ 710 (714)
+|+.+.++.|. +.++|+++|.
T Consensus 93 ~gk~~~~~~G~~~~~el~~fla 114 (115)
T d1zmaa1 93 DGQINVRCDSSMSAQEIKDFAG 114 (115)
T ss_dssp TTEEEEECCTTCCHHHHHHHHT
T ss_pred CCEEEEEEcCCCCHHHHHHHHc
Confidence 99999999999 9999999874
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=99.45 E-value=3.3e-12 Score=116.47 Aligned_cols=144 Identities=15% Similarity=0.147 Sum_probs=117.7
Q ss_pred hhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCH----HHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhh
Q 005108 432 SEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNV----EVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGL 507 (714)
Q Consensus 432 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 507 (714)
..+..+...|..++..|+|++|+..|++++...+... ...... .......+.++|.+|+++|++++|+.++++++
T Consensus 13 ~~a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~-~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al 91 (168)
T d1kt1a1 13 EQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKAS-ESFLLAAFLNLAMCYLKLREYTKAVECCDKAL 91 (168)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHH-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhc-chhHHHHHHhHHHHHHHhhhcccchhhhhhhh
Confidence 4467788999999999999999999999997544322 111111 11233445678999999999999999999999
Q ss_pred ccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHH-HHHHHHHHHH
Q 005108 508 RFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWAD-AVRDFEVLRR 576 (714)
Q Consensus 508 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~e-A~~~~~~al~ 576 (714)
+++|++..+|+++|.+|..+|++++|+.+|+++++++|++..++..++.+...++++.+ ..+.|.++++
T Consensus 92 ~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~e~~kk~~~~~f~ 161 (168)
T d1kt1a1 92 GLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNERDRRTYANMFK 161 (168)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999888776654 4444544443
|
| >d1hyua4 c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.44 E-value=1e-13 Score=112.95 Aligned_cols=79 Identities=16% Similarity=0.155 Sum_probs=71.7
Q ss_pred CceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCcchhhhCCccccceEEEEeCCeEEEEEcCC-CHHHHHH
Q 005108 629 GVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKEIVCP-SRDMLEH 707 (714)
Q Consensus 629 ~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~~~~g~-~~~~l~~ 707 (714)
...++.|+++||++|+.+.|.++++...++++.|..+|+++.++++..|+|+++||+++ ||+.+ ..|. +.++|..
T Consensus 16 ~~~i~~F~s~~C~~C~~~~p~~~~~a~~~~~i~~~~vd~~~~~~l~~~~~I~~vPt~~~--ng~~~--~~G~~~~~~l~~ 91 (96)
T d1hyua4 16 DFEFETYYSLSCHNCPDVVQALNLMAVLNPRIKHTAIDGGTFQNEITERNVMGVPAVFV--NGKEF--GQGRMTLTEIVA 91 (96)
T ss_dssp CEEEEEEECTTCSSHHHHHHHHHHHHHHCTTEEEEEEETTTCHHHHHHTTCCSSSEEEE--TTEEE--EESCCCHHHHHH
T ss_pred CeEEEEEECCCCcchHHHHHHHHHHHHhCCceEEEEEecccchHHHhhcccccccEEEE--CCEEE--EecCCCHHHHHH
Confidence 36688899999999999999999999999999999999999999999999999999754 99987 4688 9999998
Q ss_pred HHhh
Q 005108 708 SVRH 711 (714)
Q Consensus 708 ~~~~ 711 (714)
.|+.
T Consensus 92 ~les 95 (96)
T d1hyua4 92 KVDT 95 (96)
T ss_dssp HHCC
T ss_pred HHhC
Confidence 8863
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=99.44 E-value=1.3e-11 Score=121.46 Aligned_cols=92 Identities=22% Similarity=0.246 Sum_probs=72.7
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 005108 241 DAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTG----LGRIGEAVKECEEAVRLDPNYWRAHQRL 316 (714)
Q Consensus 241 ~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~l 316 (714)
||++++.+|..++..+++++|+++|+++.+. .+..+++.+|.+|.. ..++..|..+++.+... .+..+...+
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~--~~~~a~~~l 76 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL--NYSNGCHLL 76 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccc--cccchhhcc
Confidence 5788999999999999999999999999775 578899999999987 67899999999988764 467778888
Q ss_pred HHHHHH----cCCHHHHHHHHHhh
Q 005108 317 GSLLVR----LGQVENARRHLCLS 336 (714)
Q Consensus 317 a~~~~~----~g~~~~A~~~~~~a 336 (714)
|.++.. ..+.+.|+..|+.+
T Consensus 77 ~~~~~~~~~~~~~~~~a~~~~~~a 100 (265)
T d1ouva_ 77 GNLYYSGQGVSQNTNKALQYYSKA 100 (265)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred ccccccccccchhhHHHHHHHhhh
Confidence 877665 24445555544433
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.43 E-value=8.5e-13 Score=120.65 Aligned_cols=136 Identities=17% Similarity=0.117 Sum_probs=111.4
Q ss_pred hHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHH----HhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhc
Q 005108 433 EAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLL----NNVKLVARARARGNDLFKSERFTEACQAYGEGLR 508 (714)
Q Consensus 433 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l----~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~ 508 (714)
.+..+...|..++..|+|++|+..|+++++..+......... ..-..+..+.++|.++.+.|+|++|+..|+++++
T Consensus 26 ~a~~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~ 105 (169)
T d1ihga1 26 ISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALE 105 (169)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhh
Confidence 345567889999999999999999999987543221110000 0112234455779999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHH
Q 005108 509 FDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAV 568 (714)
Q Consensus 509 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~ 568 (714)
++|+++.+|+++|.+|..+|++++|+..|+++++++|++..++..++.++.++....++.
T Consensus 106 ~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~~~~~ 165 (169)
T d1ihga1 106 IDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE 165 (169)
T ss_dssp TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999988877766654
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.43 E-value=4.3e-13 Score=114.65 Aligned_cols=112 Identities=8% Similarity=0.014 Sum_probs=99.7
Q ss_pred HHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCc---CHHHHHHHHHHhhccCCCC--
Q 005108 439 VRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSE---RFTEACQAYGEGLRFDPSN-- 513 (714)
Q Consensus 439 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g---~~~~A~~~~~~al~~~p~~-- 513 (714)
.++..+...+++++|.+.|++++.++|+++++++.+ |.++.+.+ ++++|+..|+++++.+|.+
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~------------a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~ 71 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEY------------AWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQ 71 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHH------------HHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHH------------HHHHHHhcchHHHHHHHHHHHHHHhccCCchH
Confidence 466778899999999999999999999999999877 98898754 5567999999999998765
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Q 005108 514 SVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLE 562 (714)
Q Consensus 514 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 562 (714)
..+|+++|.+|.++|++++|+++|+++++++|++..+...+..+..+++
T Consensus 72 ~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~~~~ 120 (122)
T d1nzna_ 72 RDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMK 120 (122)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHc
Confidence 4689999999999999999999999999999999999988888776553
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=99.41 E-value=1.7e-11 Score=120.64 Aligned_cols=225 Identities=12% Similarity=0.036 Sum_probs=160.3
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHhhcCCCChHHHHHHHH
Q 005108 275 NAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVR----LGQVENARRHLCLSGQQADPTEVHRLQV 350 (714)
Q Consensus 275 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~l~~ 350 (714)
|+.+++.+|..+...+++++|+++|+++.+. ++..+++.||.+|.. ..++..|..+++.+.....+...
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~~~a~----- 73 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGC----- 73 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHH-----
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccccccchh-----
Confidence 5789999999999999999999999999875 578999999999987 66788888877766544333322
Q ss_pred HHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHhhccccCCCCCCCchhhh
Q 005108 351 VEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLK----LHQLEDAESSLSNIPKIEPSTVSSSQTR 426 (714)
Q Consensus 351 ~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~~ 426 (714)
..++.++.. ..+.+.|...++++.+..+..
T Consensus 74 ---------------------------------------~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~------- 107 (265)
T d1ouva_ 74 ---------------------------------------HLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAE------- 107 (265)
T ss_dssp ---------------------------------------HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHH-------
T ss_pred ---------------------------------------hccccccccccccchhhHHHHHHHhhhhhhhhhh-------
Confidence 223333322 234555555555555443322
Q ss_pred hhhhhhhHHHHHHHHHHHHH----hCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhh----CcCHHH
Q 005108 427 FFGMLSEAYTFFVRAQIEMA----LGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFK----SERFTE 498 (714)
Q Consensus 427 ~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~----~g~~~~ 498 (714)
....++..+.. ......|+..+.+... +.+...+..+ |..+.. ..+...
T Consensus 108 ---------a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~L------------~~~~~~~~~~~~~~~~ 164 (265)
T d1ouva_ 108 ---------GCASLGGIYHDGKVVTRDFKKAVEYFTKACD--LNDGDGCTIL------------GSLYDAGRGTPKDLKK 164 (265)
T ss_dssp ---------HHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH--TTCHHHHHHH------------HHHHHHTSSSCCCHHH
T ss_pred ---------HHHhhcccccCCCcccchhHHHHHHhhhhhc--ccccchhhhh------------hhhhccCCCccccccc
Confidence 33344444443 3345666666666554 3444455444 555654 567778
Q ss_pred HHHHHHHhhccCCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hccHHHHHHH
Q 005108 499 ACQAYGEGLRFDPSNSVLYCNRAACWFK----LGQWERSVEDSNQALLIQPNYTKALLRRAASNSK----LEKWADAVRD 570 (714)
Q Consensus 499 A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~eA~~~ 570 (714)
+..+++.+.+. .++.+++++|.+|.. ..++++|+.+|+++.+. +++.+++.||.+|.. ..++++|+++
T Consensus 165 ~~~~~~~a~~~--g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~LG~~y~~G~g~~~n~~~A~~~ 240 (265)
T d1ouva_ 165 ALASYDKACDL--KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL--ENGGGCFNLGAMQYNGEGVTRNEKQAIEN 240 (265)
T ss_dssp HHHHHHHHHHT--TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHTTSSSSCCSTTHHHH
T ss_pred chhhhhccccc--cccccccchhhhcccCcccccchhhhhhhHhhhhcc--cCHHHHHHHHHHHHcCCCCccCHHHHHHH
Confidence 88888888764 578999999999887 67899999999999887 468899999999986 4489999999
Q ss_pred HHHHHHhCC
Q 005108 571 FEVLRRELP 579 (714)
Q Consensus 571 ~~~al~~~p 579 (714)
|+++.+...
T Consensus 241 ~~kAa~~g~ 249 (265)
T d1ouva_ 241 FKKGCKLGA 249 (265)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHCcC
Confidence 999988763
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.40 E-value=5.4e-13 Score=118.25 Aligned_cols=111 Identities=15% Similarity=0.161 Sum_probs=99.1
Q ss_pred HhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHh----------CCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 005108 487 GNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKL----------GQWERSVEDSNQALLIQPNYTKALLRRAA 556 (714)
Q Consensus 487 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----------g~~~~A~~~~~~al~~~p~~~~~~~~la~ 556 (714)
+..+.+.+.|++|+..|+++++++|+++.+++++|.++..+ +++++|+..|+++++++|++..+|+++|.
T Consensus 4 ~~~~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~ 83 (145)
T d1zu2a1 4 ETEFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGN 83 (145)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHH
Confidence 34466778899999999999999999999999999999854 55689999999999999999999999999
Q ss_pred HHHHhcc-----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhh
Q 005108 557 SNSKLEK-----------WADAVRDFEVLRRELPDDNEIAESLFHAQVSLKK 597 (714)
Q Consensus 557 ~~~~~g~-----------~~eA~~~~~~al~~~p~~~~~~~~L~~~~~~l~~ 597 (714)
+|..+|+ +++|+++|+++++++|++..++..|..+......
T Consensus 84 ~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka~~~ 135 (145)
T d1zu2a1 84 AYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQL 135 (145)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHHHH
T ss_pred HHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHHHHH
Confidence 9988764 7999999999999999999999999887765543
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.39 E-value=2.2e-12 Score=111.66 Aligned_cols=97 Identities=29% Similarity=0.400 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcH-------HHHH
Q 005108 242 AEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYW-------RAHQ 314 (714)
Q Consensus 242 ~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-------~a~~ 314 (714)
+..+..+|+.++..|+|++|+.+|+++++++|++..++.++|.+|..+|+|++|+..|+++++++|++. .+|.
T Consensus 4 a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~ 83 (128)
T d1elra_ 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (128)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 566788999999999999999999999999999999999999999999999999999999999988764 4677
Q ss_pred HHHHHHHHcCCHHHHHHHHHhhcC
Q 005108 315 RLGSLLVRLGQVENARRHLCLSGQ 338 (714)
Q Consensus 315 ~la~~~~~~g~~~~A~~~~~~al~ 338 (714)
.+|.++..++++++|+.+|.+++.
T Consensus 84 ~lg~~~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 84 RIGNSYFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHh
Confidence 788888999999999999999876
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.38 E-value=8.2e-13 Score=117.08 Aligned_cols=112 Identities=19% Similarity=0.173 Sum_probs=96.7
Q ss_pred HHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhh----------CcCHHHHHHHHHHhhccCCCC
Q 005108 444 EMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFK----------SERFTEACQAYGEGLRFDPSN 513 (714)
Q Consensus 444 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~----------~g~~~~A~~~~~~al~~~p~~ 513 (714)
+.+++.|++|+..|+++++++|++++++..+ |.++.. .+++++|+..|+++++++|++
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~------------g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~ 74 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSNPLDADNLTRW------------GGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKK 74 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH------------HHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHccHHHHHHHHHHHHhhCCcchHHHHHH------------HHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchh
Confidence 5667889999999999999999999999877 666653 456789999999999999999
Q ss_pred HHHHHHHHHHHHHhCC-----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHH
Q 005108 514 SVLYCNRAACWFKLGQ-----------WERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADA 567 (714)
Q Consensus 514 ~~~~~~la~~~~~~g~-----------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA 567 (714)
+.+|+++|.+|..+|+ |++|+++|+++++++|++..++..|+.+....+.+.++
T Consensus 75 ~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka~~~~~e~ 139 (145)
T d1zu2a1 75 DEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQLHAEA 139 (145)
T ss_dssp HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHHHHHHHH
T ss_pred hHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999988764 79999999999999999999888888876555554444
|
| >d2djja1 c.47.1.2 (A:6-121) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Fungi (Humicola insolens) [TaxId: 34413]
Probab=99.31 E-value=5.3e-13 Score=113.54 Aligned_cols=96 Identities=16% Similarity=0.238 Sum_probs=78.5
Q ss_pred hhHHhhhc-cCCCceEEEeecCCCccccccchHHHHHHhhCCC---cEEEEEecccCcchhhhCCccccceEEEEeCCeE
Q 005108 618 LEQFRAAV-SLPGVSVVHFKSASNLHCKQISPYVETLCGRYPS---INFLKVDIDESPGVAHAENVRIVPTFKIYKNGSR 693 (714)
Q Consensus 618 ~e~~~~~i-~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~---~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~ 693 (714)
.+.|.+.+ .....++|.||++||++|+.+.|.++++...+.+ ..++.++.++...++..++|+++||+++|++|+.
T Consensus 9 ~~nF~~~v~~~~k~vlV~fya~wC~~Ck~~~p~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Pti~~f~~g~~ 88 (116)
T d2djja1 9 AKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATANDVPDEIQGFPTIKLYPAGAK 88 (116)
T ss_dssp TTTTTTSSSCTTSCEEEEEECSSCTTHHHHHHHHHHHHHHHTTSSCTTSSEEEEEETTTSCCSSCCSSSSEEEEECSSCT
T ss_pred cCCHHHHHhcCCCCEEEEEEecccccccccchHHHHHHHHHhcccccceeEEEecccchhhhcccccCCCEEEEEECCcc
Confidence 35676654 6677899999999999999999999999998864 2245677777777788899999999999999875
Q ss_pred E--EEEcCC-CHHHHHHHHhhhc
Q 005108 694 M--KEIVCP-SRDMLEHSVRHYS 713 (714)
Q Consensus 694 ~--~~~~g~-~~~~l~~~~~~~~ 713 (714)
. .++.|. +.+.|.++|++.+
T Consensus 89 ~~~~~~~g~~~~~~l~~fi~~~~ 111 (116)
T d2djja1 89 GQPVTYSGSRTVEDLIKFIAENG 111 (116)
T ss_dssp TSCCCCCCCSCHHHHHHHHHHTS
T ss_pred CceEEecCCCCHHHHHHHHHHcc
Confidence 4 356678 9999999998754
|
| >d1a8ya1 c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Calsequestrin domain: Calsequestrin species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=99.29 E-value=1.8e-12 Score=111.28 Aligned_cols=95 Identities=13% Similarity=0.112 Sum_probs=79.1
Q ss_pred hhhHHhhhccCCCceEEEeecCCCccc------cccchHHHHHHhhC--CCcEEEEEecccCcchhhhCCccccceEEEE
Q 005108 617 SLEQFRAAVSLPGVSVVHFKSASNLHC------KQISPYVETLCGRY--PSINFLKVDIDESPGVAHAENVRIVPTFKIY 688 (714)
Q Consensus 617 ~~e~~~~~i~~~~~~vv~f~a~~c~~C------~~~~p~l~~l~~~~--~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~ 688 (714)
+.++|+.++.....++|.||++||++| ..+.+.++.+...+ .++.|.+||+++.+++++.|+|.++||+++|
T Consensus 17 ~~~nf~~~l~~~~~~~V~FyapwC~~~~~~~~~~~~~~~~~~~a~~~~~~~v~~a~Vd~~~~~~l~~~~~I~~yPTi~~f 96 (124)
T d1a8ya1 17 NAKNYKNVFKKYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKGVGFGLVDSEKDAAVAKKLGLTEEDSIYVF 96 (124)
T ss_dssp CTTTHHHHHHHCSEEEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEETTTSHHHHHTTTCCSTTCEEEE
T ss_pred CHHHHHHHHHhCCeEEEEEECCCccchhhhhHHHHHHHHHHHHHHHhccCCeEEEEEEeecccchhhccccccCCcEEEe
Confidence 356788888888899999999999964 44455555555444 3589999999999999999999999999999
Q ss_pred eCCeEEEEEcCC-CHHHHHHHHhhh
Q 005108 689 KNGSRMKEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 689 ~~G~~~~~~~g~-~~~~l~~~~~~~ 712 (714)
++|+.+ ++.|. +.+.|.++|.+.
T Consensus 97 ~~g~~~-~y~G~r~~~~l~~fi~~~ 120 (124)
T d1a8ya1 97 KEDEVI-EYDGEFSADTLVEFLLDV 120 (124)
T ss_dssp ESSSEE-ECCSCCSHHHHHHHHHHH
T ss_pred ccCccE-EeeCCCCHHHHHHHHHHh
Confidence 999977 57788 999999999764
|
| >d2b5ea1 c.47.1.2 (A:365-504) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.28 E-value=8.9e-13 Score=116.05 Aligned_cols=100 Identities=18% Similarity=0.276 Sum_probs=79.1
Q ss_pred eeeehhhhHHhhhc-cCCCceEEEeecCCCccccccchHHHHHHhhCCC--cEEEEEecccCcchhhhCCccccceEEEE
Q 005108 612 VEEVSSLEQFRAAV-SLPGVSVVHFKSASNLHCKQISPYVETLCGRYPS--INFLKVDIDESPGVAHAENVRIVPTFKIY 688 (714)
Q Consensus 612 ~~~i~~~e~~~~~i-~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~--~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~ 688 (714)
+..+.. ..|...+ .....++|.||++||++|+.+.|.++++...+.+ ..+..+++|...+++..|+|.++||+++|
T Consensus 14 V~~l~~-~nf~~~v~~~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~~~~~v~~~~~d~~~~~~~~~~v~~~Ptl~~f 92 (140)
T d2b5ea1 14 VFQLVG-KNHDEIVNDPKKDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKLDHTENDVRGVVIEGYPTIVLY 92 (140)
T ss_dssp EEEECT-TTHHHHHHCTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHHHHCSSCEEEEEEGGGCCCSSCCCSSSSEEEEE
T ss_pred cEEecC-cCHHHHHhcCCCCEEEEEEeccCcccchhHHHHHHHHHHHhccccceEEEeeeccchhccccccccCCeEEEE
Confidence 444444 5667665 4456799999999999999999999999987742 33444555556678999999999999999
Q ss_pred eCCeEEEEE--cCC-CHHHHHHHHhhh
Q 005108 689 KNGSRMKEI--VCP-SRDMLEHSVRHY 712 (714)
Q Consensus 689 ~~G~~~~~~--~g~-~~~~l~~~~~~~ 712 (714)
++|+.+..+ .|. +.+.|..+|++.
T Consensus 93 ~~g~~~~~~~y~G~~t~~~l~~fi~~~ 119 (140)
T d2b5ea1 93 PGGKKSESVVYQGSRSLDSLFDFIKEN 119 (140)
T ss_dssp CCTTSCCCCBCCSCCCHHHHHHHHHHH
T ss_pred ECCEEcceeEeCCCCCHHHHHHHHHHc
Confidence 999887654 477 999999999875
|
| >d2fwha1 c.47.1.1 (A:428-544) Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) species: Escherichia coli [TaxId: 562]
Probab=99.26 E-value=1.9e-12 Score=110.17 Aligned_cols=96 Identities=11% Similarity=0.230 Sum_probs=76.0
Q ss_pred hhhhHHhhhcc--CCCceEEEeecCCCccccccchHH---HHHHhhCCCcEEEEEeccc----CcchhhhCCccccceEE
Q 005108 616 SSLEQFRAAVS--LPGVSVVHFKSASNLHCKQISPYV---ETLCGRYPSINFLKVDIDE----SPGVAHAENVRIVPTFK 686 (714)
Q Consensus 616 ~~~e~~~~~i~--~~~~~vv~f~a~~c~~C~~~~p~l---~~l~~~~~~~~~~~vd~d~----~~~l~~~~~v~~~Pt~~ 686 (714)
.+.+++...+. .+++++|+||++||++|+.+.|.+ .++...+.++.++.+|++. ..++++.|+|.++||++
T Consensus 8 ~~~~~~~~~l~~~~gK~vlv~F~a~wC~~C~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~Pt~~ 87 (117)
T d2fwha1 8 KTVDELNQALVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALADTVLLQANVTANDAQDVALLKHLNVLGLPTIL 87 (117)
T ss_dssp CSHHHHHHHHHHHTTSCEEEEEECTTCHHHHHHHHHTTTSHHHHHHTTTSEEEEEECTTCCHHHHHHHHHTTCCSSSEEE
T ss_pred cCHHHHHHHHHHcCCCeEEEEEecccCCcccccchhHHhHHHHHHhccceEEEecccccchhHHHHHHhhhehhhceEEE
Confidence 34444444432 356899999999999999999987 5566666778888888754 44689999999999999
Q ss_pred EE-eCCeEEE--EEcCC-CHHHHHHHHhh
Q 005108 687 IY-KNGSRMK--EIVCP-SRDMLEHSVRH 711 (714)
Q Consensus 687 ~~-~~G~~~~--~~~g~-~~~~l~~~~~~ 711 (714)
+| ++|+.+. ++.|. +.+++.++|++
T Consensus 88 ~~~~~G~~~~~~~~~G~~~~~~~~~~l~~ 116 (117)
T d2fwha1 88 FFDGQGQEHPQARVTGFMDAETFSAHLRD 116 (117)
T ss_dssp EECTTSCBCGGGCBCSCCCHHHHHHHHHH
T ss_pred EEeCCCcEEecccccccCCHHHHHHHHhc
Confidence 99 8898874 68899 99999998874
|
| >d2c0ga2 c.47.1.7 (A:1024-1145) Windbeutel, N-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: ERP29 N domain-like domain: Windbeutel, N-terminal domain species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.21 E-value=8.8e-12 Score=106.46 Aligned_cols=94 Identities=17% Similarity=0.148 Sum_probs=78.0
Q ss_pred hhHHhhhccCCCceEEEeecCCCccccccchHHHHHHhhC----CCcEEEEEeccc-----CcchhhhCCc--cccceEE
Q 005108 618 LEQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRY----PSINFLKVDIDE-----SPGVAHAENV--RIVPTFK 686 (714)
Q Consensus 618 ~e~~~~~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~----~~~~~~~vd~d~-----~~~l~~~~~v--~~~Pt~~ 686 (714)
.++|++++.....++|.|+++||++|+ .|.++++.+.+ +++.+.+||+++ +.+++..|+| +++||++
T Consensus 9 ~~nFd~~v~~~~~~lV~Fya~wC~~ck--~p~f~kla~~~~~~~~~v~ia~Vd~~~~~~~~n~~l~~~~~i~~~~~PTi~ 86 (122)
T d2c0ga2 9 ELSFEKTVERFPYSVVKFDIASPYGEK--HEAFTAFSKSAHKATKDLLIATVGVKDYGELENKALGDRYKVDDKNFPSIF 86 (122)
T ss_dssp TTTHHHHHTTSSEEEEEEEESSCCSHH--HHHHHHHHHHHHHHCSSEEEEEEEECSSTTCTTHHHHHHTTCCTTSCCEEE
T ss_pred hHhHHHHHhcCCcEEEEEECCCCCccc--CHHHHHHHHHHHHhCCCeEEEeccccccccccCHHHHHHhhcccCCCCcEE
Confidence 367899998888999999999999999 48888887664 568899999864 5789999988 5799999
Q ss_pred EEeCCeEEE---EEcCC-CHHHHHHHHhhhc
Q 005108 687 IYKNGSRMK---EIVCP-SRDMLEHSVRHYS 713 (714)
Q Consensus 687 ~~~~G~~~~---~~~g~-~~~~l~~~~~~~~ 713 (714)
+|++|.... ...|. +.+.|..+|++..
T Consensus 87 ~f~~g~~~~~~~~~~g~rt~~~l~~fv~~~~ 117 (122)
T d2c0ga2 87 LFKGNADEYVQLPSHVDVTLDNLKAFVSANT 117 (122)
T ss_dssp EESSSSSSEEECCTTSCCCHHHHHHHHHHHS
T ss_pred EEeCCcccccccccCCCCCHHHHHHHHHHhc
Confidence 999987544 33466 9999999999864
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=99.18 E-value=5.8e-11 Score=106.53 Aligned_cols=97 Identities=13% Similarity=0.214 Sum_probs=85.5
Q ss_pred HHHhHHhhCcCHHHHHHHHHHhhccCCCC------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC------
Q 005108 485 ARGNDLFKSERFTEACQAYGEGLRFDPSN------------SVLYCNRAACWFKLGQWERSVEDSNQALLIQPN------ 546 (714)
Q Consensus 485 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------ 546 (714)
..|..++..|+|++|+..|++++++.|+. ..+|.++|.+|.++|+|++|+..+++++++.|.
T Consensus 14 ~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~ 93 (156)
T d2hr2a1 14 SDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQ 93 (156)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTS
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccc
Confidence 45889999999999999999999987764 468999999999999999999999999986432
Q ss_pred -----CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Q 005108 547 -----YTKALLRRAASNSKLEKWADAVRDFEVLRRELPDD 581 (714)
Q Consensus 547 -----~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~ 581 (714)
...+++++|.+|..+|++++|++.|++++++.|+.
T Consensus 94 ~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~ 133 (156)
T d2hr2a1 94 DEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER 133 (156)
T ss_dssp THHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred cccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence 24578999999999999999999999999986644
|
| >d1z5ye1 c.47.1.10 (E:49-184) Thioredoxin-like protein CcmG (CycY, DsbE) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin-like protein CcmG (CycY, DsbE) species: Escherichia coli [TaxId: 562]
Probab=99.18 E-value=1.1e-11 Score=108.34 Aligned_cols=83 Identities=10% Similarity=0.053 Sum_probs=67.1
Q ss_pred CCCceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEeccc-----------------------CcchhhhCCccccc
Q 005108 627 LPGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDE-----------------------SPGVAHAENVRIVP 683 (714)
Q Consensus 627 ~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~-----------------------~~~l~~~~~v~~~P 683 (714)
.+++++++||++||++|+...|.++++..+. +.++.++.+. ...++..|+|.++|
T Consensus 19 ~Gk~vvl~FwatWC~pC~~e~p~l~~~~~~~--~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P 96 (136)
T d1z5ye1 19 QGKPVLLNVWATWCPTSRAEHQYLNQLSAQG--IRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYGAP 96 (136)
T ss_dssp SSSCEEEEEECTTCHHHHHHHHHHHHHHHTT--CCEEEEEESCCHHHHHHHHHHHCCCCSEEEEESSCHHHHHHTCCSBS
T ss_pred CCCEEEEEEEcCcCCCcCccccchhhhhhhh--hhhcccccccchhhhHHHHHHcCCccceeecccchhHHHhcccCCcc
Confidence 5669999999999999999999999997753 4444444332 44578899999999
Q ss_pred eEEEE-eCCeEEEEEcCC-CHHHHHHHHhh
Q 005108 684 TFKIY-KNGSRMKEIVCP-SRDMLEHSVRH 711 (714)
Q Consensus 684 t~~~~-~~G~~~~~~~g~-~~~~l~~~~~~ 711 (714)
+++++ ++|+++.+..|+ +.+.+++.|++
T Consensus 97 ~~~liD~~G~i~~~~~G~~~~~~l~~~i~~ 126 (136)
T d1z5ye1 97 ETFLIDGNGIIRYRHAGDLNPRVWEEEIKP 126 (136)
T ss_dssp EEEEECTTSCEEEEEESCCCHHHHHHHTHH
T ss_pred eEEEEcCCCEEEEEEEcCCCHHHHHHHHHH
Confidence 87777 999999999998 88877776654
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.14 E-value=1.1e-10 Score=94.60 Aligned_cols=83 Identities=17% Similarity=0.187 Sum_probs=75.3
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHH
Q 005108 241 DAEELKRMGNELYRKGCFGEALSMYDKAISLAPRN-------AAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAH 313 (714)
Q Consensus 241 ~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 313 (714)
+++.++.+|..+++.|+|++|+..|++|+++.|.+ ..++.++|.++.++|++++|+..|+++++++|++..++
T Consensus 4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~ 83 (95)
T d1tjca_ 4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (95)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHH
Confidence 46788999999999999999999999999986543 68899999999999999999999999999999999999
Q ss_pred HHHHHHHHHc
Q 005108 314 QRLGSLLVRL 323 (714)
Q Consensus 314 ~~la~~~~~~ 323 (714)
.+++.+...+
T Consensus 84 ~Nl~~~~~~l 93 (95)
T d1tjca_ 84 GNLKYFEYIM 93 (95)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9998766543
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.12 E-value=2e-10 Score=93.08 Aligned_cols=81 Identities=10% Similarity=-0.098 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-------CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHH
Q 005108 515 VLYCNRAACWFKLGQWERSVEDSNQALLIQPN-------YTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAES 587 (714)
Q Consensus 515 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-------~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~ 587 (714)
+-++.+|.++++.|+|++|+.+|++|+++.|. ...++.++|.++.++|++++|+.+|+++++++|+++++...
T Consensus 6 ddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~N 85 (95)
T d1tjca_ 6 EDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGN 85 (95)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHH
Confidence 34455666666666666666666666654332 23556666666666666666666666666666666666666
Q ss_pred HHHHHHHh
Q 005108 588 LFHAQVSL 595 (714)
Q Consensus 588 L~~~~~~l 595 (714)
+...+..+
T Consensus 86 l~~~~~~l 93 (95)
T d1tjca_ 86 LKYFEYIM 93 (95)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 55554443
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=99.12 E-value=3.6e-11 Score=107.91 Aligned_cols=115 Identities=15% Similarity=0.101 Sum_probs=89.0
Q ss_pred hhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCC
Q 005108 432 SEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDP 511 (714)
Q Consensus 432 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p 511 (714)
..++.+...|..++..|+|++|+..|++++++.|+.++.+........+..+.++|.+|..+|+|++|+..+++++++.|
T Consensus 7 a~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~ 86 (156)
T d2hr2a1 7 VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN 86 (156)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccc
Confidence 34555666689999999999999999999998887643211111111223344679999999999999999999998643
Q ss_pred C-----------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Q 005108 512 S-----------NSVLYCNRAACWFKLGQWERSVEDSNQALLIQPN 546 (714)
Q Consensus 512 ~-----------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 546 (714)
. ...+++++|.+|..+|++++|++.|++++++.|+
T Consensus 87 ~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~ 132 (156)
T d2hr2a1 87 RRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE 132 (156)
T ss_dssp HHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 2 2457899999999999999999999999998654
|
| >d1zzoa1 c.47.1.10 (A:45-178) Lipoprotein DsbF {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Lipoprotein DsbF species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.07 E-value=1.4e-10 Score=100.85 Aligned_cols=84 Identities=19% Similarity=0.217 Sum_probs=72.3
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEeccc-----------------------CcchhhhCCccccce
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDE-----------------------SPGVAHAENVRIVPT 684 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~-----------------------~~~l~~~~~v~~~Pt 684 (714)
.++++++||++||++|+...|.+.++..+++++.++.|+.++ ...+.+.|+|.++|+
T Consensus 25 Gk~vll~fwa~wC~~C~~~~p~l~~l~~~~~~~~~v~v~~~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~v~~~P~ 104 (134)
T d1zzoa1 25 GKPAVLWFWAPWCPTCQGEAPVVGQVAASHPEVTFVGVAGLDQVPAMQEFVNKYPVKTFTQLADTDGSVWANFGVTQQPA 104 (134)
T ss_dssp TSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCHHHHHHHHHHTTCTTSEEEECTTCHHHHHTTCCSSSE
T ss_pred CCEEEEEecccccCcccccchhhHHHHhhhcccccccccccccchhHHHHHHhcCCcceeEEeeccchHHHhcCCCccCe
Confidence 568999999999999999999999999999988887776543 446788999999999
Q ss_pred EEEE-eCCeEEEEEcCC-CHHHHHHHHhhh
Q 005108 685 FKIY-KNGSRMKEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 685 ~~~~-~~G~~~~~~~g~-~~~~l~~~~~~~ 712 (714)
++|+ ++|++.. +.|. +.++|++.|+.+
T Consensus 105 ~~iiD~~G~i~~-~~g~~~~~~l~~~i~~L 133 (134)
T d1zzoa1 105 YAFVDPHGNVDV-VRGRMSQDELTRRVTAL 133 (134)
T ss_dssp EEEECTTCCEEE-EESCCCHHHHHHHHHHH
T ss_pred EEEECCCCeEEE-EECCCCHHHHHHHHHhh
Confidence 8888 8998655 5677 999999999875
|
| >d1wjka_ c.47.1.1 (A:) Thioredoxin-like structure containing protein C330018D20Rik {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin-like structure containing protein C330018D20Rik species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.02 E-value=3.5e-11 Score=98.04 Aligned_cols=80 Identities=16% Similarity=0.297 Sum_probs=69.2
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCcchhhhCCccccceEEEEeCCeEEEEEcCC-CHHHHH
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKEIVCP-SRDMLE 706 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~~~~g~-~~~~l~ 706 (714)
.-++++.|+++||+.|+++.+.|+++..+++ +.++.+|+++++++++.|+++ ||++++ ||+.+ +.|. +.++|+
T Consensus 15 ~~p~i~lft~~~C~~C~~a~~~L~~~~~~~~-~~~v~vd~~~~~~l~~~y~~~-VPvl~i--dg~~~--~~g~~d~~~L~ 88 (100)
T d1wjka_ 15 ALPVLTLFTKAPCPLCDEAKEVLQPYKDRFI-LQEVDITLPENSTWYERYKFD-IPVFHL--NGQFL--MMHRVNTSKLE 88 (100)
T ss_dssp CCCEEEEEECSSCHHHHHHHHHTSTTSSSSE-EEEEETTSSTTHHHHHHSSSS-CSEEEE--SSSEE--EESSCCHHHHH
T ss_pred CCCEEEEEECCCCCChHHHHHHHHHhhhhcc-eEEEecccccCHHHHHHhccc-CCceee--cCceE--EeCCCCHHHHH
Confidence 3467899999999999999999999988776 678899999999999999998 997654 89887 4566 999999
Q ss_pred HHHhhhc
Q 005108 707 HSVRHYS 713 (714)
Q Consensus 707 ~~~~~~~ 713 (714)
+.|++++
T Consensus 89 ~~L~~l~ 95 (100)
T d1wjka_ 89 KQLRKLS 95 (100)
T ss_dssp HHHHSSS
T ss_pred HHHHHHh
Confidence 9999864
|
| >d1knga_ c.47.1.10 (A:) Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyrhizobium japonicum [TaxId: 375]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin-like protein CcmG (CycY, DsbE) species: Bradyrhizobium japonicum [TaxId: 375]
Probab=99.01 E-value=2.4e-10 Score=100.74 Aligned_cols=83 Identities=17% Similarity=0.226 Sum_probs=68.4
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecc-----------------------cCcchhhhCCccccce
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDID-----------------------ESPGVAHAENVRIVPT 684 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d-----------------------~~~~l~~~~~v~~~Pt 684 (714)
+++++++||+.||++|+...|.+.++...+. +.++.|.++ ....+++.|+|.++|+
T Consensus 31 gK~vll~fwa~wC~~C~~~~p~l~~l~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~ 109 (144)
T d1knga_ 31 GKVSLVNVWASWCVPCHDEAPLLTELGKDKR-FQLVGINYKDAADNARRFLGRYGNPFGRVGVDANGRASIEWGVYGVPE 109 (144)
T ss_dssp TSCEEEEEECTTCHHHHHHHHHHHHHTTCTT-SEEEEEEESCCHHHHHHHHHHHCCCCSEEEEETTSHHHHHTTCCSSCE
T ss_pred CCEEEEEeeccccccccccCchhhhhhhccC-ceeEEEEeeechHHHHHHHHHcCCccccccccccchhhhhcCccccce
Confidence 4689999999999999999999999987764 444433322 3556899999999999
Q ss_pred EEEE-eCCeEEEEEcCC-CHHHHHHHHhh
Q 005108 685 FKIY-KNGSRMKEIVCP-SRDMLEHSVRH 711 (714)
Q Consensus 685 ~~~~-~~G~~~~~~~g~-~~~~l~~~~~~ 711 (714)
++++ ++|+++.++.|+ +.++|++.|++
T Consensus 110 ~~liD~~G~i~~~~~G~~~~~~l~~~i~~ 138 (144)
T d1knga_ 110 TFVVGREGTIVYKLVGPITPDNLRSVLLP 138 (144)
T ss_dssp EEEECTTSBEEEEEESCCCHHHHHHTHHH
T ss_pred EEEEcCCCeEEEEEeCCCCHHHHHHHHHH
Confidence 8777 899999999999 88888887765
|
| >d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain {Neisseria meningitidis serogroup A [TaxId: 65699]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain species: Neisseria meningitidis serogroup A [TaxId: 65699]
Probab=99.01 E-value=3.7e-10 Score=99.40 Aligned_cols=86 Identities=14% Similarity=0.171 Sum_probs=72.9
Q ss_pred CCCceEEEeecCCCccccccchHHHHHHhhCC--CcEEEEEecc----------------------------cCcchhhh
Q 005108 627 LPGVSVVHFKSASNLHCKQISPYVETLCGRYP--SINFLKVDID----------------------------ESPGVAHA 676 (714)
Q Consensus 627 ~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~--~~~~~~vd~d----------------------------~~~~l~~~ 676 (714)
.+++++++||++||++|+...|.+.++..++. ++.++.|..+ ...+++..
T Consensus 22 ~gk~vvl~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~ 101 (143)
T d2fy6a1 22 KDKPTLIKFWASWCPLCLSELGQTEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLNYPKLPVVTDNGGTIAQS 101 (143)
T ss_dssp TTSCEEEEEECTTCHHHHTTHHHHHHHHHCGGGTTSEEEEEECTTSTTCCCTTHHHHHHTTSCCTTSCEEECTTCHHHHH
T ss_pred CCCEEEEEEECCCCccccccCcchhhhhhhhccCCcEEEEEeeeecccccchhhhhhhhhhcCCcccccccccchHHHHH
Confidence 45689999999999999999999999988774 4666655532 24466889
Q ss_pred CCccccceEEEE-eCCeEEEEEcCC-CHHHHHHHHhhh
Q 005108 677 ENVRIVPTFKIY-KNGSRMKEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 677 ~~v~~~Pt~~~~-~~G~~~~~~~g~-~~~~l~~~~~~~ 712 (714)
|+|.++|+++++ ++|+++.+..|. +.++++..|+..
T Consensus 102 ~~v~~~P~~~liD~~G~i~~~~~G~~~~~~~~~~l~~~ 139 (143)
T d2fy6a1 102 LNISVYPSWALIGKDGDVQRIVKGSINEAQALALIRDP 139 (143)
T ss_dssp TTCCSSSEEEEECTTSCEEEEEESCCCHHHHHHHHHCT
T ss_pred cCCCccCEEEEECCCCEEEEEEECCCCHHHHHHHHHHH
Confidence 999999999888 999999999999 999999999875
|
| >d2b5xa1 c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase YkuV {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: thiol:disulfide oxidoreductase YkuV species: Bacillus subtilis [TaxId: 1423]
Probab=99.00 E-value=3.4e-10 Score=99.59 Aligned_cols=86 Identities=23% Similarity=0.351 Sum_probs=73.5
Q ss_pred CCCceEEEeecCCCccccccchHHHHHHhhCCC-cEEEEEeccc---------------------------CcchhhhCC
Q 005108 627 LPGVSVVHFKSASNLHCKQISPYVETLCGRYPS-INFLKVDIDE---------------------------SPGVAHAEN 678 (714)
Q Consensus 627 ~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~-~~~~~vd~d~---------------------------~~~l~~~~~ 678 (714)
..++++++||++||++|+...|.++++..++.+ +.++.|+++. ...+++.|+
T Consensus 28 ~~k~vvl~f~a~~C~~C~~~~p~l~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~~~ 107 (143)
T d2b5xa1 28 GEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQDQLNVVAVHMPRSEDDLDPGKIKETAAEHDITQPIFVDSDHALTDAFE 107 (143)
T ss_dssp TTSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTSEEEEEECCCSTTTSSHHHHHHHHHHTTCCSCEEECSSCHHHHHTC
T ss_pred CCCEEEEEEEcCCCcchhhhhhhhhhhhhhhhccccceeEEeeccccccchhhhhhHHHhhccCccccccCccchHHHcC
Confidence 456899999999999999999999999998875 7888776532 334677899
Q ss_pred ccccceEEEE-eCCeEEEEEcCC-CHHHHHHHHhhh
Q 005108 679 VRIVPTFKIY-KNGSRMKEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 679 v~~~Pt~~~~-~~G~~~~~~~g~-~~~~l~~~~~~~ 712 (714)
|..+|+++++ ++|+.+.+..|. +.++|++.|+++
T Consensus 108 v~~~P~~~~id~~G~i~~~~~G~~~~~~l~~~l~~l 143 (143)
T d2b5xa1 108 NEYVPAYYVFDKTGQLRHFQAGGSGMKMLEKRVNRV 143 (143)
T ss_dssp CCCSSEEEEECTTCBEEEEEESCSTTHHHHHHHHHH
T ss_pred CCcCCEEEEECCCCEEEEEEECCCCHHHHHHHHHhC
Confidence 9999998777 999999999999 889999998874
|
| >d1lu4a_ c.47.1.10 (A:) Soluble secreted antigen MPT53 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Soluble secreted antigen MPT53 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.98 E-value=3.5e-10 Score=98.26 Aligned_cols=84 Identities=19% Similarity=0.287 Sum_probs=71.7
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEeccc----------------------CcchhhhCCccccceE
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDE----------------------SPGVAHAENVRIVPTF 685 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~----------------------~~~l~~~~~v~~~Pt~ 685 (714)
.+++++.||++||++|+...|.++++..+++++.++.|+.++ ...++..|+|..+|++
T Consensus 24 Gk~vll~F~a~wC~~C~~~~p~l~~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~v~~~P~~ 103 (134)
T d1lu4a_ 24 GKPAVLWFWTPWCPFCNAEAPSLSQVAAANPAVTFVGIATRADVGAMQSFVSKYNLNFTNLNDADGVIWARYNVPWQPAF 103 (134)
T ss_dssp TSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCHHHHHHHHHHHTCCSEEEECTTSHHHHHTTCCSSSEE
T ss_pred CCEEEEEEeecccCCceecchhHHHHhhhhccccccccccccchhhhhhhhhhhccccceeeCchHHHHHHcCCCcCCEE
Confidence 568999999999999999999999999999999998888664 4457889999999998
Q ss_pred EEE-eCCeEEE--EEcCC-CHHHHHHHHhh
Q 005108 686 KIY-KNGSRMK--EIVCP-SRDMLEHSVRH 711 (714)
Q Consensus 686 ~~~-~~G~~~~--~~~g~-~~~~l~~~~~~ 711 (714)
+++ ++|+.+. +..|. +.++|.+.|+.
T Consensus 104 ~lid~~G~i~~v~~~~g~~~~~~l~~~l~~ 133 (134)
T d1lu4a_ 104 VFYRADGTSTFVNNPTAAMSQDELSGRVAA 133 (134)
T ss_dssp EEECTTSCEEEECCSSSCCCHHHHHHHHHH
T ss_pred EEEeCCCeEEEEeccCCCCCHHHHHHHHHc
Confidence 888 8998754 44566 99999988875
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=98.97 E-value=1.2e-09 Score=106.15 Aligned_cols=129 Identities=16% Similarity=0.169 Sum_probs=105.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHH
Q 005108 249 GNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVRLGQVEN 328 (714)
Q Consensus 249 g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~ 328 (714)
++.++..|++++|+..|+++++.+|++..++..++.+|+..|++++|+..|+++++++|++..++..++.++...+..++
T Consensus 3 ~~~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~ 82 (264)
T d1zbpa1 3 WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKD 82 (264)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999988887777
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCC
Q 005108 329 ARRHLCLSGQQADPTEVHRLQVVEKHLSKCTDARKVGDWKSALREGDAAIAAGAD 383 (714)
Q Consensus 329 A~~~~~~al~~~~~~~~~~l~~~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~ 383 (714)
+...+.+.....++..+ ..++..+..+...|++++|+..++++.+..|.
T Consensus 83 a~~~~~~~~~~~~p~~~------~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~ 131 (264)
T d1zbpa1 83 FAQGAATAKVLGENEEL------TKSLVSFNLSMVSQDYEQVSELALQIEELRQE 131 (264)
T ss_dssp HTTSCCCEECCCSCHHH------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHhhhhhcccCchHH------HHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Confidence 76655554444444433 23334455566777777777777777777665
|
| >d1g7ea_ c.47.1.7 (A:) Endoplasmic reticulum protein ERP29, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: ERP29 N domain-like domain: Endoplasmic reticulum protein ERP29, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.96 E-value=1.5e-10 Score=98.64 Aligned_cols=95 Identities=9% Similarity=0.108 Sum_probs=75.5
Q ss_pred hhhHHhhhccCCCceEEEeecCCCccccccchHHHHHHhhCC---C-----cEEEEEecccCcchhhhC--CccccceEE
Q 005108 617 SLEQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYP---S-----INFLKVDIDESPGVAHAE--NVRIVPTFK 686 (714)
Q Consensus 617 ~~e~~~~~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~---~-----~~~~~vd~d~~~~l~~~~--~v~~~Pt~~ 686 (714)
+.+.|++.+.....++|.|+++||..|.. |..+++...+. + +.+.++|++++.+++..+ +|+++||++
T Consensus 10 ~~~nFd~~i~~~~~~lV~F~~~wc~~~~~--~~~~~la~~~~~~~~~~~~~V~~~~vd~~~n~~l~~~~~~~I~~yPTi~ 87 (122)
T d1g7ea_ 10 DTVTFYKVIPKSKFVLVKFDTQYPYGEKQ--DEFKRLAENSASSDDLLVAEVGISDYGDKLNMELSEKYKLDKESYPVFY 87 (122)
T ss_dssp SHHHHHHHGGGSSEEEEEEECSSCCTTTT--HHHHHHHHHGGGCSSEEEEEEESCCTTSCHHHHHHHHHTCSSSSCEEEE
T ss_pred CHHhHHHHHhhCCeEEEEEecCCcCcccC--HHHHHHHHHHHHHHHHhhhccceeeccccccHHHHHhhcccccCCCeEE
Confidence 34688899988889999999999988864 77777777663 2 333455777788898875 578999999
Q ss_pred EEeCCeEE--EEEcCC-CHHHHHHHHhhhc
Q 005108 687 IYKNGSRM--KEIVCP-SRDMLEHSVRHYS 713 (714)
Q Consensus 687 ~~~~G~~~--~~~~g~-~~~~l~~~~~~~~ 713 (714)
+|++|+.. .++.|. +.+.|.++|++.+
T Consensus 88 ~f~~G~~~~~~~y~G~rt~~~l~~fi~~~~ 117 (122)
T d1g7ea_ 88 LFRDGDFENPVPYSGAVKVGAIQRWLKGQG 117 (122)
T ss_dssp EEESSCCCCCEEEESCCCHHHHHHHHHTTS
T ss_pred EEecCcccCceecCCCCCHHHHHHHHHhcc
Confidence 99999754 467788 9999999999865
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=98.89 E-value=9.4e-10 Score=107.04 Aligned_cols=132 Identities=8% Similarity=-0.012 Sum_probs=114.9
Q ss_pred HHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHH
Q 005108 442 QIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRA 521 (714)
Q Consensus 442 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 521 (714)
.-.+..|++++|+..|+++++.+|++...+..+ +.+|+..|++++|++.|+++++++|++...+..++
T Consensus 4 ~~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~L------------a~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~ 71 (264)
T d1zbpa1 4 KNALSEGQLQQALELLIEAIKASPKDASLRSSF------------IELLCIDGDFERADEQLMQSIKLFPEYLPGASQLR 71 (264)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHH------------HHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHH------------HHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 445678999999999999999999999999887 99999999999999999999999999999999999
Q ss_pred HHHHHhCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHH
Q 005108 522 ACWFKLGQWERSVEDSNQALL-IQPNYTKALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIA 585 (714)
Q Consensus 522 ~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~ 585 (714)
.++...+..+++...+.+... ..|+....+...+.++...|++++|++.++++.++.|+.+...
T Consensus 72 ~ll~a~~~~~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~~ 136 (264)
T d1zbpa1 72 HLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLA 136 (264)
T ss_dssp HHHHHHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEE
T ss_pred HHHHhccccHHHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCccc
Confidence 999888877777665544333 3466667778889999999999999999999999999876543
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.87 E-value=2.7e-08 Score=90.45 Aligned_cols=96 Identities=11% Similarity=0.120 Sum_probs=87.5
Q ss_pred HHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCC----------------------HHHHHHHHHHHHHhCCHHHHHHHHH
Q 005108 481 ARARARGNDLFKSERFTEACQAYGEGLRFDPSN----------------------SVLYCNRAACWFKLGQWERSVEDSN 538 (714)
Q Consensus 481 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~----------------------~~~~~~la~~~~~~g~~~~A~~~~~ 538 (714)
..+...|..+...|++++|+..|.+++.+.+.+ ..++.+++.++..+|++++|+.+++
T Consensus 12 ~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~~ 91 (179)
T d2ff4a2 12 VAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELE 91 (179)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHH
Confidence 445567999999999999999999999987654 2578889999999999999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 005108 539 QALLIQPNYTKALLRRAASNSKLEKWADAVRDFEVLRR 576 (714)
Q Consensus 539 ~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~ 576 (714)
++++++|.+..+|..++.+|..+|++.+|++.|+++.+
T Consensus 92 ~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~ 129 (179)
T d2ff4a2 92 ALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 129 (179)
T ss_dssp HHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999844
|
| >d1st9a_ c.47.1.10 (A:) Thiol-disulfide oxidoreductase ResA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thiol-disulfide oxidoreductase ResA species: Bacillus subtilis [TaxId: 1423]
Probab=98.77 E-value=6e-09 Score=90.66 Aligned_cols=86 Identities=17% Similarity=0.264 Sum_probs=73.1
Q ss_pred CCCceEEEeecCCCccccccchHHHHHHhhCC--CcEEEEEeccc----------------------CcchhhhCCcccc
Q 005108 627 LPGVSVVHFKSASNLHCKQISPYVETLCGRYP--SINFLKVDIDE----------------------SPGVAHAENVRIV 682 (714)
Q Consensus 627 ~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~--~~~~~~vd~d~----------------------~~~l~~~~~v~~~ 682 (714)
..+++++.||+.||++|....|.+.++..+++ ++.++.|++++ ...++..|+|.++
T Consensus 24 ~gk~~li~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~ 103 (137)
T d1st9a_ 24 KGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQGVEIVAVNVGESKIAVHNFMKSYGVNFPVVLDTDRQVLDAYDVSPL 103 (137)
T ss_dssp TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCHHHHHHHHHHTTCCSCEEEETTSHHHHHTTCCSS
T ss_pred CCCEEEEEEeeccccceeecccccccccccccccccccccccccchhhhHHHHHHHcCCCccccccccchhhhhhhcccc
Confidence 34589999999999999999999999998885 48888877654 3356789999999
Q ss_pred ceEEEE-eCCeEEEEEcCC-CHHHHHHHHhhh
Q 005108 683 PTFKIY-KNGSRMKEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 683 Pt~~~~-~~G~~~~~~~g~-~~~~l~~~~~~~ 712 (714)
|+++++ ++|+.+.++.|. +.+.+++.|+.+
T Consensus 104 P~~~liD~~G~i~~~~~G~~~~~~~~~~l~~l 135 (137)
T d1st9a_ 104 PTTFLINPEGKVVKVVTGTMTESMIHDYMNLI 135 (137)
T ss_dssp CEEEEECTTSEEEEEEESCCCHHHHHHHHHHH
T ss_pred ceEEEECCCCEEEEEEECCCCHHHHHHHHHhh
Confidence 988777 999999999999 888888888755
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.74 E-value=4.4e-08 Score=89.00 Aligned_cols=95 Identities=16% Similarity=0.021 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----------------------HHHHHHHHHHHHHCCCHHHHHHHH
Q 005108 242 AEELKRMGNELYRKGCFGEALSMYDKAISLAPRN----------------------AAFRSNRAAALTGLGRIGEAVKEC 299 (714)
Q Consensus 242 ~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~----------------------~~~~~~la~~~~~~g~~~~A~~~~ 299 (714)
.+.+...|..+...|++++|+..|.+|+.+.+.+ ..++..++.++..+|++++|+.++
T Consensus 11 f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~ 90 (179)
T d2ff4a2 11 FVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAEL 90 (179)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHH
Confidence 4778899999999999999999999999987643 257889999999999999999999
Q ss_pred HHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 005108 300 EEAVRLDPNYWRAHQRLGSLLVRLGQVENARRHLCLS 336 (714)
Q Consensus 300 ~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~a 336 (714)
+++++++|.+..+|..++.+|...|++.+|+..|+++
T Consensus 91 ~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~ 127 (179)
T d2ff4a2 91 EALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRV 127 (179)
T ss_dssp HHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999776
|
| >d1i5ga_ c.47.1.10 (A:) Tryparedoxin II {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin II species: Crithidia fasciculata [TaxId: 5656]
Probab=98.74 E-value=3.2e-09 Score=93.04 Aligned_cols=69 Identities=13% Similarity=0.169 Sum_probs=56.3
Q ss_pred CCCceEEEeecCCCccccccchHHHHHHhhCC---CcEEEEEecccC------------------------cchhhhCCc
Q 005108 627 LPGVSVVHFKSASNLHCKQISPYVETLCGRYP---SINFLKVDIDES------------------------PGVAHAENV 679 (714)
Q Consensus 627 ~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~---~~~~~~vd~d~~------------------------~~l~~~~~v 679 (714)
..++++++|||+||++|+...|.|.++.+++. ++.++.|..|+. ..|++.|+|
T Consensus 27 ~GK~vll~FwAtWC~pC~~~~p~L~~l~~~~~~~~~~~vi~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~y~v 106 (144)
T d1i5ga_ 27 AGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDV 106 (144)
T ss_dssp TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHTTC
T ss_pred CCCEEEEEEEecCCchHhhhhHhHHHHHHHHHhccCcEEEEEeccccHHHHHHHHHhCCCCceeeEChHHHHHHHHHCCC
Confidence 35689999999999999999999999988874 477888887751 235778999
Q ss_pred cccceEEEE-eC-CeEEE
Q 005108 680 RIVPTFKIY-KN-GSRMK 695 (714)
Q Consensus 680 ~~~Pt~~~~-~~-G~~~~ 695 (714)
.++||++++ ++ |+++.
T Consensus 107 ~~iPt~~lid~~~G~vi~ 124 (144)
T d1i5ga_ 107 KSIPTLVGVEADSGNIIT 124 (144)
T ss_dssp CSSSEEEEEETTTCCEEE
T ss_pred CCcCEEEEEeCCCCEEEe
Confidence 999998777 66 77764
|
| >d1o73a_ c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei brucei [TaxId: 5702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin I species: Trypanosoma brucei brucei [TaxId: 5702]
Probab=98.67 E-value=5.5e-09 Score=91.66 Aligned_cols=69 Identities=13% Similarity=0.264 Sum_probs=57.1
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhCC---CcEEEEEeccc------------------------CcchhhhCCcc
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRYP---SINFLKVDIDE------------------------SPGVAHAENVR 680 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~---~~~~~~vd~d~------------------------~~~l~~~~~v~ 680 (714)
+++++++||++||++|+...|.|.++.++|. ++.++.|.+|+ ..++++.|+|.
T Consensus 28 GK~vvl~FwatwC~~C~~~~p~l~~l~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~v~ 107 (144)
T d1o73a_ 28 GKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVAKNFEVVLISWDENESDFHDYYGKMPWLALPFDQRSTVSELGKTFGVE 107 (144)
T ss_dssp TCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHHTCC
T ss_pred CCEEEEEeChhhCccchhhhHHHHHHHHHHhhccCeEEEEEecchhHHHHHHHHHhccccceeeeccchHHHHHHHcCCC
Confidence 5689999999999999999999999998884 48888888775 12357789999
Q ss_pred ccceEEEE-eC-CeEEEE
Q 005108 681 IVPTFKIY-KN-GSRMKE 696 (714)
Q Consensus 681 ~~Pt~~~~-~~-G~~~~~ 696 (714)
++|+++++ ++ |+++.+
T Consensus 108 ~~Pt~~lID~~~G~Ii~~ 125 (144)
T d1o73a_ 108 SIPTLITINADTGAIIGT 125 (144)
T ss_dssp SSSEEEEEETTTCCEEES
T ss_pred cCCEEEEEECCCCEEEee
Confidence 99999888 66 777654
|
| >d1sena_ c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin-like protein p19, TLP19 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.57 E-value=1.9e-08 Score=87.13 Aligned_cols=79 Identities=14% Similarity=0.139 Sum_probs=62.1
Q ss_pred HhhhccCCCceEEEeecCCCccccccchHHHHHHh---hCCCcEEEEEecccCcchhhh-CCccccceEEEE-eCCeEEE
Q 005108 621 FRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCG---RYPSINFLKVDIDESPGVAHA-ENVRIVPTFKIY-KNGSRMK 695 (714)
Q Consensus 621 ~~~~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~---~~~~~~~~~vd~d~~~~l~~~-~~v~~~Pt~~~~-~~G~~~~ 695 (714)
+..+...+++++|+||++||++|+.+.|.+.+... ...++..+.||.+..+.+... +.+..+||++++ .+|+.+.
T Consensus 18 l~~A~~~~Kpvlv~F~a~wC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~~~~~~Pt~~~~d~~G~~~~ 97 (135)
T d1sena_ 18 KKEAAASGLPLMVIIHKSWCGACKALKPKFAESTEISELSHNFVMVNLEDEEEPKDEDFSPDGGYIPRILFLDPSGKVHP 97 (135)
T ss_dssp HHHHHHHTCCEEEEEECTTCHHHHHHHHHHHTCHHHHHHHTTSEEEEEEGGGSCSCGGGCTTCSCSSEEEEECTTSCBCT
T ss_pred HHHHHHcCCcEEEEEEecCCCCceecchhhhhhHHHHHhcCCcEEEeCCCCcCHHHHHHHhhcccceeEEEECCCCeEEE
Confidence 44555667899999999999999999998765433 335688889998887776654 455678999888 8999988
Q ss_pred EEcC
Q 005108 696 EIVC 699 (714)
Q Consensus 696 ~~~g 699 (714)
++.|
T Consensus 98 ~~~g 101 (135)
T d1sena_ 98 EIIN 101 (135)
T ss_dssp TCCC
T ss_pred EecC
Confidence 8777
|
| >d2cvba1 c.47.1.10 (A:2-188) Probable thiol-disulfide isomerase/thioredoxin TTHA0593 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Probable thiol-disulfide isomerase/thioredoxin TTHA0593 species: Thermus thermophilus [TaxId: 274]
Probab=98.56 E-value=3.9e-08 Score=89.91 Aligned_cols=85 Identities=16% Similarity=0.139 Sum_probs=66.3
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhCCC-cEEEEEecc-----------------------------cCcchhhhC
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRYPS-INFLKVDID-----------------------------ESPGVAHAE 677 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~-~~~~~vd~d-----------------------------~~~~l~~~~ 677 (714)
.++++|.||+.||++|+...|.|.+|.++|.+ +.|+.|+.. ...+++++|
T Consensus 32 Gk~vvl~FwatwCp~C~~~~p~l~~l~~~y~~~v~~v~i~snd~~~~~~~~~e~~~~~~~~~~~~~p~l~D~~~~~~~~~ 111 (187)
T d2cvba1 32 EPLLAVVFMCNHCPYVKGSIGELVALAERYRGKVAFVGINANDYEKYPEDAPEKMAAFAEEHGIFFPYLLDETQEVAKAY 111 (187)
T ss_dssp SSEEEEEEECSSCHHHHTTHHHHHHHHHHTTTTEEEEEEECCCTTTCGGGSHHHHHHHHHHHTCCSCEEECSSSHHHHHT
T ss_pred CCeEEEEEeCCCCccchhhhhhhhhhhhhccccceeeeeeccccccccccchHHHHHHHHHhCCcceeeechhhhhcccc
Confidence 46889999999999999999999999999965 777777521 155678999
Q ss_pred CccccceEEEE-eCCeEEEEEc-----C---C-CHHHHHHHHhhh
Q 005108 678 NVRIVPTFKIY-KNGSRMKEIV-----C---P-SRDMLEHSVRHY 712 (714)
Q Consensus 678 ~v~~~Pt~~~~-~~G~~~~~~~-----g---~-~~~~l~~~~~~~ 712 (714)
+|..+|+++++ ++|+++.+-. + . +...|++.|+.+
T Consensus 112 ~v~~~P~~~liD~~G~i~y~G~idd~~~~~~~~~~~~L~~Ai~~l 156 (187)
T d2cvba1 112 RALRTPEVFLFDERRLLRYHGRVNDNPKDPSKVQSHDLEAAIEAL 156 (187)
T ss_dssp TCCEESEEEEECTTCBEEEEECSSSCTTCGGGCCCCHHHHHHHHH
T ss_pred cccceeeEEEEcCCCeEEEEeeecCCCCCCCCCCHHHHHHHHHHH
Confidence 99999998888 9999886421 0 1 335677777654
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.53 E-value=3.9e-07 Score=75.07 Aligned_cols=85 Identities=13% Similarity=0.006 Sum_probs=75.4
Q ss_pred CHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHH
Q 005108 513 NSVLYCNRAACWFKL---GQWERSVEDSNQALLIQPNYT-KALLRRAASNSKLEKWADAVRDFEVLRRELPDDNEIAESL 588 (714)
Q Consensus 513 ~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~L 588 (714)
.....+++|+++.+. .+.++|+..++++++.+|.+. +.++.||..|.++|+|++|.++++++++++|++..+....
T Consensus 34 s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L~ 113 (124)
T d2pqrb1 34 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK 113 (124)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHHH
Confidence 378999999999865 456799999999999998765 8999999999999999999999999999999999998888
Q ss_pred HHHHHHhhh
Q 005108 589 FHAQVSLKK 597 (714)
Q Consensus 589 ~~~~~~l~~ 597 (714)
..+...+.+
T Consensus 114 ~~Ie~~~~k 122 (124)
T d2pqrb1 114 SMVEDKIQK 122 (124)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 777766654
|
| >d2dlxa1 c.47.1.24 (A:1-147) UBX domain-containing protein 7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: UAS domain domain: UBX domain-containing protein 7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.49 E-value=4.4e-08 Score=85.39 Aligned_cols=88 Identities=11% Similarity=0.147 Sum_probs=64.1
Q ss_pred hhhccCCCceEEEeecCCCccccccch------HHHHHHhhCCCcEEEEEeccc--CcchhhhCCccccceEEEE--eCC
Q 005108 622 RAAVSLPGVSVVHFKSASNLHCKQISP------YVETLCGRYPSINFLKVDIDE--SPGVAHAENVRIVPTFKIY--KNG 691 (714)
Q Consensus 622 ~~~i~~~~~~vv~f~a~~c~~C~~~~p------~l~~l~~~~~~~~~~~vd~d~--~~~l~~~~~v~~~Pt~~~~--~~G 691 (714)
..+....+.++|+|+++||+.|+.+.. .+.++.. .++.++.||++. ...+++.|+|.++|+++|+ .+|
T Consensus 36 ~~Ak~~~K~llV~~~~~~C~~C~~m~~~v~~d~~V~~~l~--~~fV~~~v~~~~~e~~~~~~~y~v~~~Pti~~idp~~g 113 (147)
T d2dlxa1 36 ECGQMQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIR--EHFIFWQVYHDSEEGQRYIQFYKLGDFPYVSILDPRTG 113 (147)
T ss_dssp HHHHHHTCEEEEEEECSCTTTHHHHHHHTTTCHHHHHHHH--HTEEEEEEESSSHHHHHHHHHHTCCSSSEEEEECTTTC
T ss_pred HHHHHcCCcEEEEEecCCCCchHHHHHhccCCHHHHHHHh--hheeEeeecccchhhhhhhhheecCceeEEEEEeCCCC
Confidence 334455779999999999999998765 3333332 256777888765 4678999999999999999 468
Q ss_pred eEEEEEcCCCHHHHHHHHhh
Q 005108 692 SRMKEIVCPSRDMLEHSVRH 711 (714)
Q Consensus 692 ~~~~~~~g~~~~~l~~~~~~ 711 (714)
+++....+.+.+++...|+.
T Consensus 114 e~v~~~~~~~~~~fl~~L~~ 133 (147)
T d2dlxa1 114 QKLVEWHQLDVSSFLDQVTG 133 (147)
T ss_dssp CCCEEESSCCHHHHHHHHHH
T ss_pred eEecccCCCCHHHHHHHHHH
Confidence 87765545587776555554
|
| >d1o8xa_ c.47.1.10 (A:) Tryparedoxin I {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin I species: Crithidia fasciculata [TaxId: 5656]
Probab=98.48 E-value=4.4e-08 Score=85.83 Aligned_cols=68 Identities=13% Similarity=0.203 Sum_probs=56.2
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhCC---CcEEEEEeccc------------------------CcchhhhCCcc
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRYP---SINFLKVDIDE------------------------SPGVAHAENVR 680 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~---~~~~~~vd~d~------------------------~~~l~~~~~v~ 680 (714)
+++++++||++||++|+...|.+.++..++. ++.++.|+.++ ..++++.|+|.
T Consensus 26 GK~vll~Fwa~wC~~C~~~~~~l~~l~~~~~~~~~~~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~y~v~ 105 (144)
T d1o8xa_ 26 GKLVFFYFSASWCPPARGFTPQLIEFYDKFHESKNFEVVFCTWDEEEDGFAGYFAKMPWLAVPFAQSEAVQKLSKHFNVE 105 (144)
T ss_dssp TCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCGGGHHHHHHHHHHTTCC
T ss_pred CCEEEEEeccccccccccccchhHHhhhhcccccccccccccccccHHHHHHHHhhccccceeeecccchhhHHHHcCCC
Confidence 5689999999999999999999999999884 47777777764 23468899999
Q ss_pred ccceEEEE-eC-CeEEE
Q 005108 681 IVPTFKIY-KN-GSRMK 695 (714)
Q Consensus 681 ~~Pt~~~~-~~-G~~~~ 695 (714)
++||++++ ++ |+++.
T Consensus 106 ~~Pt~~liD~~~G~Vi~ 122 (144)
T d1o8xa_ 106 SIPTLIGVDADSGDVVT 122 (144)
T ss_dssp SSSEEEEEETTTCCEEE
T ss_pred cCCEEEEEeCCCCEEEE
Confidence 99999888 57 66653
|
| >d1z6na1 c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Hypothetical protein PA1234 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.47 E-value=7.2e-08 Score=86.49 Aligned_cols=74 Identities=7% Similarity=0.011 Sum_probs=63.9
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCcchhhhC---CccccceEEEE-eCCeEEEEEcCCC
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAHAE---NVRIVPTFKIY-KNGSRMKEIVCPS 701 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~l~~~~---~v~~~Pt~~~~-~~G~~~~~~~g~~ 701 (714)
..+.++.||++||++|+...|.+.++...++++.+..|++++.++.+..| +...+|+++++ .+++...++++..
T Consensus 54 ~~~~~l~~~~tWC~~C~~~~P~l~~l~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~P 131 (166)
T d1z6na1 54 RRYRLLVAGEMWCPDCQINLAALDFAQRLQPNIELAIISKGRAEDDLRQRLALERIAIPLVLVLDEEFNLLGRFVERP 131 (166)
T ss_dssp SCEEEEEECCTTCHHHHHHHHHHHHHHHHCTTEEEEEECHHHHHHHTTTTTTCSSCCSSEEEEECTTCCEEEEEESSC
T ss_pred CCeEEEEEEeCcCccHHHHHHHHHHHHHHCCCCcEEEEECccCHHHHHHHHHhccccccceeecCccchhcccccccc
Confidence 45778999999999999999999999999999999999999999999988 55577887777 7777888876653
|
| >d1jfua_ c.47.1.10 (A:) Membrane-anchored thioredoxin-like protein TlpA, soluble domain {Bradyrhizobium japonicum [TaxId: 375]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Membrane-anchored thioredoxin-like protein TlpA, soluble domain species: Bradyrhizobium japonicum [TaxId: 375]
Probab=98.43 E-value=1.5e-07 Score=85.42 Aligned_cols=86 Identities=15% Similarity=0.270 Sum_probs=66.1
Q ss_pred CCCceEEEeecCCCccccccchHHHHHHhhCC--CcEEEEEecc--cCc--------------------------chhhh
Q 005108 627 LPGVSVVHFKSASNLHCKQISPYVETLCGRYP--SINFLKVDID--ESP--------------------------GVAHA 676 (714)
Q Consensus 627 ~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~--~~~~~~vd~d--~~~--------------------------~l~~~ 676 (714)
..++++++||++||+.|+...+.+.++..++. ++.++.|.++ ..+ .+...
T Consensus 55 kGK~vll~F~a~wC~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 134 (176)
T d1jfua_ 55 RGKTLLVNLWATWCVPCRKEMPALDELQGKLSGPNFEVVAINIDTRDPEKPKTFLKEANLTRLGYFNDQKAKVFQDLKAI 134 (176)
T ss_dssp TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHCBTTEEEEEEECCCSCTTHHHHHHHHTTCCTTCCEECTTCHHHHHHHTT
T ss_pred CCCEEEEEeccCcccchHHHHHhhhhccccccccccccccccccccchhhhhhhHhhhCCcceeeeecchhHHHHHHhhh
Confidence 35689999999999999999999999988774 4666666544 211 12335
Q ss_pred CCccccceEEEE-eCCeEEEEEcCC---CHHHHHHHHhhh
Q 005108 677 ENVRIVPTFKIY-KNGSRMKEIVCP---SRDMLEHSVRHY 712 (714)
Q Consensus 677 ~~v~~~Pt~~~~-~~G~~~~~~~g~---~~~~l~~~~~~~ 712 (714)
++|.++|+++++ ++|+++.++.|. +.+++.+.|+.+
T Consensus 135 ~~v~~~P~~~lID~~G~I~~~~~G~~~~~~~e~~~~l~al 174 (176)
T d1jfua_ 135 GRALGMPTSVLVDPQGCEIATIAGPAEWASEDALKLIRAA 174 (176)
T ss_dssp TCCSSSSEEEEECTTSBEEEEEESCCCTTSHHHHHHHHHH
T ss_pred ccCCCCCeEEEEcCCCEEEEEEECCCCCChHHHHHHHHHh
Confidence 678889998777 999999999996 557788887764
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.17 E-value=6.6e-06 Score=67.56 Aligned_cols=74 Identities=12% Similarity=0.047 Sum_probs=63.8
Q ss_pred HhHHhhC---cCHHHHHHHHHHhhccCCCCH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 005108 487 GNDLFKS---ERFTEACQAYGEGLRFDPSNS-VLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSK 560 (714)
Q Consensus 487 g~~~~~~---g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 560 (714)
|+++.+. .+.++|+.+++++++.+|.+. +.++++|..|+++|+|++|.++++++++++|++..+....-.+..+
T Consensus 42 Aw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L~~~Ie~~ 119 (124)
T d2pqrb1 42 AWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMVEDK 119 (124)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHHHHHHHHH
Confidence 7777755 456789999999999998774 8999999999999999999999999999999999887666555544
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=98.16 E-value=2.1e-05 Score=66.95 Aligned_cols=111 Identities=12% Similarity=-0.003 Sum_probs=91.7
Q ss_pred CcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHH-
Q 005108 448 GRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFK- 526 (714)
Q Consensus 448 g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~- 526 (714)
.++++|+++|+++.+... ......+ +. ....++++|+.+|+++.+. .++.+.+.+|.+|..
T Consensus 7 kd~~~A~~~~~kaa~~g~--~~a~~~l------------~~--~~~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g 68 (133)
T d1klxa_ 7 KDLKKAIQYYVKACELNE--MFGCLSL------------VS--NSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENG 68 (133)
T ss_dssp HHHHHHHHHHHHHHHTTC--TTHHHHH------------HT--CTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHC
T ss_pred cCHHHHHHHHHHHHHCCC--hhhhhhh------------cc--ccccCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhc
Confidence 478999999999987753 3333333 32 4557899999999999876 589999999999986
Q ss_pred ---hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hccHHHHHHHHHHHHHhC
Q 005108 527 ---LGQWERSVEDSNQALLIQPNYTKALLRRAASNSK----LEKWADAVRDFEVLRREL 578 (714)
Q Consensus 527 ---~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~eA~~~~~~al~~~ 578 (714)
..++++|+++|+++.+. .++.+.+.||.+|.. ..++++|+++|+++.+..
T Consensus 69 ~~~~~d~~~A~~~~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 69 KYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 125 (133)
T ss_dssp SSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred cccchhhHHHHHHHhhhhcc--CcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence 56899999999999876 578999999999987 568999999999998875
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=97.85 E-value=7.6e-05 Score=63.35 Aligned_cols=111 Identities=10% Similarity=0.018 Sum_probs=86.2
Q ss_pred CHHHHHHHhhccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHH
Q 005108 401 QLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLV 480 (714)
Q Consensus 401 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~ 480 (714)
++++|+.+|+++.+..... ..+.++. ....++++|+++|+++.+. .++.+.+.+
T Consensus 8 d~~~A~~~~~kaa~~g~~~----------------a~~~l~~--~~~~~~~~a~~~~~~aa~~--g~~~a~~~L------ 61 (133)
T d1klxa_ 8 DLKKAIQYYVKACELNEMF----------------GCLSLVS--NSQINKQKLFQYLSKACEL--NSGNGCRFL------ 61 (133)
T ss_dssp HHHHHHHHHHHHHHTTCTT----------------HHHHHHT--CTTSCHHHHHHHHHHHHHT--TCHHHHHHH------
T ss_pred CHHHHHHHHHHHHHCCChh----------------hhhhhcc--ccccCHHHHHHHHhhhhcc--cchhhhhhH------
Confidence 5677888888877665332 3444443 3457899999999999865 566666655
Q ss_pred HHHHHHHhHHhh----CcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHhCC
Q 005108 481 ARARARGNDLFK----SERFTEACQAYGEGLRFDPSNSVLYCNRAACWFK----LGQWERSVEDSNQALLIQP 545 (714)
Q Consensus 481 ~~~~~~g~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p 545 (714)
|.+|.. ..++++|+++|+++.+. .++.+.++||.+|.. ..++++|+++|+++.+...
T Consensus 62 ------g~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 62 ------GDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 126 (133)
T ss_dssp ------HHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred ------HHhhhhccccchhhHHHHHHHhhhhcc--CcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence 777765 56899999999999886 578999999999987 5689999999999988753
|
| >d1eeja1 c.47.1.9 (A:61-216) Disulfide bond isomerase, DsbC, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: DsbC/DsbG C-terminal domain-like domain: Disulfide bond isomerase, DsbC, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.51 E-value=2e-05 Score=69.15 Aligned_cols=81 Identities=10% Similarity=0.106 Sum_probs=60.2
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEe-----------------------------------------
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVD----------------------------------------- 666 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd----------------------------------------- 666 (714)
...+++.|....||.|+++.|.+.++......+.+...=
T Consensus 26 ak~tIv~FsD~~CpyC~~~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (156)
T d1eeja1 26 EKHVITVFTDITCGYCHKLHEQMADYNALGITVRYLAFPRQGLDSDAEKEMKAIWCAKDKNKAFDDVMAGKSVAPASCDV 105 (156)
T ss_dssp CCEEEEEEECTTCHHHHHHHTTHHHHHHTTEEEEEEECCTTCSSSHHHHHHHHHHTSSSHHHHHHHHHTTCCCCCCCCSC
T ss_pred CCEEEEEEeCCCCHHHHHHHHHHHHhhccCceEEEEeccccccchhhHHHHHHHHHhhhhhhhhHHHHhccccchhhhcc
Confidence 457888999999999999999999987654322222111
Q ss_pred -cccCcchhhhCCccccceEEEEeCCeEEEEEcCC-CHHHHHHHHhhh
Q 005108 667 -IDESPGVAHAENVRIVPTFKIYKNGSRMKEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 667 -~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~~~~g~-~~~~l~~~~~~~ 712 (714)
++.+..+++.+||+++||++ +.||+.+ .|. +.+.|+..|+..
T Consensus 106 ~i~~~~~la~~lgv~GTPt~~-~~nG~~v---~G~~~~e~l~~~i~~~ 149 (156)
T d1eeja1 106 DIADHYALGVQLGVSGTPAVV-LSNGTLV---PGYQPPKEMKEFLDEH 149 (156)
T ss_dssp CHHHHHHHHHHHTCCSSSEEE-CTTSCEE---ESCCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCcCCCEEE-EeCCeEe---cCCCCHHHHHHHHHHH
Confidence 22245578899999999964 5789754 598 999999999864
|
| >d2cx4a1 c.47.1.10 (A:4-163) Bacterioferritin comigratory protein {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Bacterioferritin comigratory protein species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=97.48 E-value=0.00011 Score=64.48 Aligned_cols=86 Identities=15% Similarity=0.106 Sum_probs=62.9
Q ss_pred CCCceEEEee-cCCCccccccchHHHHHHhhCC--CcEEEEEeccc---------------------CcchhhhCCcc--
Q 005108 627 LPGVSVVHFK-SASNLHCKQISPYVETLCGRYP--SINFLKVDIDE---------------------SPGVAHAENVR-- 680 (714)
Q Consensus 627 ~~~~~vv~f~-a~~c~~C~~~~p~l~~l~~~~~--~~~~~~vd~d~---------------------~~~l~~~~~v~-- 680 (714)
..+++++.|| +.||+.|....+.+.++..++. ++.++-+..+. ...++++|+|.
T Consensus 29 ~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~ 108 (160)
T d2cx4a1 29 RGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEKANAEVLAISVDSPWCLKKFKDENRLAFNLLSDYNREVIKLYNVYHE 108 (160)
T ss_dssp TSSCEEEEECSCTTCHHHHHHHHHHHHTCTTTSTTCCEEEEEESSCHHHHHHHHHHHTCSSEEEECTTSHHHHHTTCEEE
T ss_pred CCCEEEEEecccccCCchhhhhhhhhcccccccccccccccccccchhhhhhhcccceeeEEEeecCCcchHHHcCcccc
Confidence 3457788887 8999999999999999888875 36677666542 45568888883
Q ss_pred --------ccceEEEE-eCCeEEEEEcCC------CHHHHHHHHhhh
Q 005108 681 --------IVPTFKIY-KNGSRMKEIVCP------SRDMLEHSVRHY 712 (714)
Q Consensus 681 --------~~Pt~~~~-~~G~~~~~~~g~------~~~~l~~~~~~~ 712 (714)
..|+++|+ ++|+++...++. +.+++.+.++++
T Consensus 109 ~~~~~~~~~~~~~flId~~G~I~~~~~~~~~~~~~~~~eil~~l~~l 155 (160)
T d2cx4a1 109 DLKGLKMVAKRAVFIVKPDGTVAYKWVTDNPLNEPDYDEVVREANKI 155 (160)
T ss_dssp EETTEEEEECCEEEEECTTSBEEEEEECSSTTCCCCHHHHHHHHHHH
T ss_pred ccccccccceeeEEEEcCCCEEEEEEEeCCCCCCCCHHHHHHHHHHH
Confidence 46766655 999999876643 456676666654
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.46 E-value=0.013 Score=57.29 Aligned_cols=76 Identities=21% Similarity=0.284 Sum_probs=47.1
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 005108 241 DAEELKRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLL 320 (714)
Q Consensus 241 ~~~~~~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~ 320 (714)
|..-.-..|..+++.|.|+.|..+|... .+ +-.+..++.++++++.|.+.+.++ ++.+.|..+...+
T Consensus 13 n~~d~~~i~~~c~~~~lye~A~~lY~~~-----~d---~~rl~~~~v~l~~~~~avd~~~k~-----~~~~~~k~~~~~l 79 (336)
T d1b89a_ 13 NNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SN---FGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFAC 79 (336)
T ss_dssp ----------------CTTTHHHHHHHT-----TC---HHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHCCCHHHHHHHHHhC-----CC---HHHHHHHHHhhccHHHHHHHHHHc-----CCHHHHHHHHHHH
Confidence 3344556888899999999999999854 12 345667889999999999988876 4677888888888
Q ss_pred HHcCCHHHH
Q 005108 321 VRLGQVENA 329 (714)
Q Consensus 321 ~~~g~~~~A 329 (714)
....+...|
T Consensus 80 ~~~~e~~la 88 (336)
T d1b89a_ 80 VDGKEFRLA 88 (336)
T ss_dssp HHTTCHHHH
T ss_pred HhCcHHHHH
Confidence 887766554
|
| >d1t3ba1 c.47.1.9 (A:61-210) Disulfide bond isomerase, DsbC, C-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: DsbC/DsbG C-terminal domain-like domain: Disulfide bond isomerase, DsbC, C-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=97.42 E-value=2.6e-05 Score=67.78 Aligned_cols=80 Identities=13% Similarity=0.106 Sum_probs=61.5
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEe-----------------------------------------
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVD----------------------------------------- 666 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd----------------------------------------- 666 (714)
...+++.|....||.|+++++.++.+....+.+.++...
T Consensus 26 ak~~I~~FsD~~CPyC~~~~~~l~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~~~~~~~~~~~~~~~~ 105 (150)
T d1t3ba1 26 EKHVVTVFMDITCHYCHLLHQQLKEYNDLGITVRYLAFPRAGMNNQTAKQMEAIWTAKDPVFALNEAEKGNLPKEVKTPN 105 (150)
T ss_dssp CSEEEEEEECTTCHHHHHHHTTHHHHHHTTEEEEEEECCSSTTCSHHHHHHHHHHHSSSHHHHHHHHHTTCCCSSCCCSS
T ss_pred CCEEEEEEECCCCHHHHHHhHHHHHHhccCceEEEEEecccccchhHHHHHHHHHHhhhHHHhhHhHhhhccccchhhhh
Confidence 456788899999999999999999998765544443322
Q ss_pred -cccCcchhhhCCccccceEEEEeCCeEEEEEcCC-CHHHHHHHHhh
Q 005108 667 -IDESPGVAHAENVRIVPTFKIYKNGSRMKEIVCP-SRDMLEHSVRH 711 (714)
Q Consensus 667 -~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~~~~g~-~~~~l~~~~~~ 711 (714)
++.+.++++.+||+++|||++ .||+. +.|. +.++|+..|++
T Consensus 106 ~i~~~~~la~~lGv~GTPt~~~-~nG~~---i~G~~~~~~l~~~l~~ 148 (150)
T d1t3ba1 106 IVKKHYELGIQFGVRGTPSIVT-STGEL---IGGYLKPADLLRALEE 148 (150)
T ss_dssp HHHHHHHHHHHHTCCSSCEEEC-TTSCC---CCSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcCCCCEEEE-cCCcE---ecCCCCHHHHHHHHHh
Confidence 112455688999999998764 68874 4688 99999999875
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=97.34 E-value=0.0081 Score=61.93 Aligned_cols=276 Identities=12% Similarity=-0.040 Sum_probs=155.9
Q ss_pred HHHHHHhCCCCHHHHHHH---HHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC--C
Q 005108 265 YDKAISLAPRNAAFRSNR---AAALTGLGRIGEAVKECEEAVRLDPNYWRAHQRLGSLLVRLGQVENARRHLCLSGQ--Q 339 (714)
Q Consensus 265 ~~~al~~~p~~~~~~~~l---a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~la~~~~~~g~~~~A~~~~~~al~--~ 339 (714)
+...++.+|+.+.....+ -..+.+.+++++.+..| ...|.+......++.++...|+..+|...+..+-. .
T Consensus 58 i~~Fl~~~p~~P~~~~lr~~~l~~L~~~~~w~~~~~~~----~~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~ 133 (450)
T d1qsaa1 58 VTNFVRANPTLPPARTLQSRFVNELARREDWRGLLAFS----PEKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGK 133 (450)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHC----CSCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSS
T ss_pred HHHHHHHCCCChhHHHHHHHHHHHHHhccCHHHHHHhc----cCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Confidence 345566688877654433 34556667776644433 34677788888888888899999888887766544 2
Q ss_pred CChHHHHHHH-H--------HHHHHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHhh
Q 005108 340 ADPTEVHRLQ-V--------VEKHLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLKLHQLEDAESSLS 410 (714)
Q Consensus 340 ~~~~~~~~l~-~--------~~~~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~~g~~~~A~~~~~ 410 (714)
..+.....+. . -+.+..+...+...+++..|...+.. -|.....+......++. +.........
T Consensus 134 ~~p~~c~~l~~~~~~~~~lt~~~~~~R~~~~l~~~~~~~a~~l~~~----l~~~~~~~~~a~~~l~~---~p~~~~~~~~ 206 (450)
T d1qsaa1 134 SQPNACDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQ----MPADYQTIASAIISLAN---NPNTVLTFAR 206 (450)
T ss_dssp CCCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHHHT----CCGGGHHHHHHHHHHHH---CGGGHHHHHH
T ss_pred CCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhhHHHHHhh----CChhHHHHHHHHHHHHh---ChHhHHHHHh
Confidence 2222211111 0 11222333444445555554443321 11111111111111111 1111111111
Q ss_pred ccccCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHH
Q 005108 411 NIPKIEPSTVSSSQTRFFGMLSEAYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDL 490 (714)
Q Consensus 411 ~al~~~p~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~ 490 (714)
. .+.+ .........+..-....+.+.|...+.......+.....+..... .++..+
T Consensus 207 ~----~~~~------------~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~--------~~a~~~ 262 (450)
T d1qsaa1 207 T----TGAT------------DFTRQMAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRD--------IVAWRL 262 (450)
T ss_dssp H----SCCC------------HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHH--------HHHHTS
T ss_pred c----CCCC------------hhhhHHHHHHHHHHhccChhHHHHHHHhhhhcccccHHHHHHHHH--------HHHHHH
Confidence 1 1111 011223334444555678889999888877666555544433211 224455
Q ss_pred hhCcCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHH
Q 005108 491 FKSERFTEACQAYGEGLRFDPSNSVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKWADAVRD 570 (714)
Q Consensus 491 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~eA~~~ 570 (714)
...+..+.|...+........+.......++ .....+++..+...++.+-..........|.+|..+..+|+.++|..+
T Consensus 263 ~~~~~~~~a~~~~~~~~~~~~~~~~~~w~~~-~al~~~~~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~ 341 (450)
T d1qsaa1 263 MGNDVTDEQAKWRDDAIMRSQSTSLIERRVR-MALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEI 341 (450)
T ss_dssp CSTTCCHHHHHHHHHHHHTCCCHHHHHHHHH-HHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHcCchHHHHHHHHhhcccccchHHHHHHHH-HHHHcCChHHHHHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHH
Confidence 5667788888888877766554444444444 456678999999888765433334578889999999999999999999
Q ss_pred HHHHHH
Q 005108 571 FEVLRR 576 (714)
Q Consensus 571 ~~~al~ 576 (714)
|..+..
T Consensus 342 ~~~~a~ 347 (450)
T d1qsaa1 342 LHQLMQ 347 (450)
T ss_dssp HHHHHT
T ss_pred HHHHhc
Confidence 999875
|
| >d2bmxa1 c.47.1.10 (A:2-170) Alkyl hydroperoxide reductase AhpC {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Alkyl hydroperoxide reductase AhpC species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.25 E-value=0.00027 Score=62.53 Aligned_cols=84 Identities=17% Similarity=0.109 Sum_probs=63.7
Q ss_pred CceEEEee-cCCCccccccchHHHHHHhhCC--CcEEEEEeccc-------------------------CcchhhhCCc-
Q 005108 629 GVSVVHFK-SASNLHCKQISPYVETLCGRYP--SINFLKVDIDE-------------------------SPGVAHAENV- 679 (714)
Q Consensus 629 ~~~vv~f~-a~~c~~C~~~~p~l~~l~~~~~--~~~~~~vd~d~-------------------------~~~l~~~~~v- 679 (714)
+.+|+.|| +.||+.|....+.+.++..++. ++.++.|.++. ..+++++|||
T Consensus 45 K~vvl~f~p~~~~p~C~~~~~~~~~~~~~~~~~g~~vv~is~d~~~~~~~~~~~~~~~~~~~f~ll~D~~~~v~~~ygv~ 124 (169)
T d2bmxa1 45 KWRVVFFWPKDFTFVCPTEIAAFSKLNDEFEDRDAQILGVSIDSEFAHFQWRAQHNDLKTLPFPMLSDIKRELSQAAGVL 124 (169)
T ss_dssp CEEEEEECSCTTSCCCHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHHCTTGGGCCSCEEECTTSHHHHHHTCB
T ss_pred CeEEEEEecCCCCccccccccccccccccccccCcceeeccccchhhhhhhcccccccccceEEEEeccHHHHHHHcCCC
Confidence 46777887 8999999999999998888874 57777776653 4457889998
Q ss_pred ----cccceEEEE-eCCeEEEEEcCC-----CHHHHHHHHhhh
Q 005108 680 ----RIVPTFKIY-KNGSRMKEIVCP-----SRDMLEHSVRHY 712 (714)
Q Consensus 680 ----~~~Pt~~~~-~~G~~~~~~~g~-----~~~~l~~~~~~~ 712 (714)
...|+.+|+ ++|+++...++. +.+++.+.|+.+
T Consensus 125 ~~~~~~~r~~fvID~~G~I~~~~~~~~~~~~~~~evl~~l~al 167 (169)
T d2bmxa1 125 NADGVADRVTFIVDPNNEIQFVSATAGSVGRNVDEVLRVLDAL 167 (169)
T ss_dssp CTTSSBCEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHH
T ss_pred ccCCccceeEEEEcCCCEEEEEEEcCCCCCCCHHHHHHHHHHh
Confidence 677876666 899998765432 667777777764
|
| >d1e2ya_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue) species: Crithidia fasciculata [TaxId: 5656]
Probab=97.21 E-value=0.00034 Score=61.75 Aligned_cols=85 Identities=15% Similarity=0.128 Sum_probs=61.3
Q ss_pred CCceEEEee-cCCCccccccchHHHHHHhhCC--CcEEEEEeccc----------------------------Ccchhhh
Q 005108 628 PGVSVVHFK-SASNLHCKQISPYVETLCGRYP--SINFLKVDIDE----------------------------SPGVAHA 676 (714)
Q Consensus 628 ~~~~vv~f~-a~~c~~C~~~~p~l~~l~~~~~--~~~~~~vd~d~----------------------------~~~l~~~ 676 (714)
.+.+|+.|| +.||+.|....+.+.++..++. ++.++-|..+. ...++..
T Consensus 33 GK~vVl~F~p~~~c~~C~~e~~~l~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~ 112 (167)
T d1e2ya_ 33 GKYVVLFFYPMDFTFVCPTEIIQFSDDAKRFAEINTEVISCSCDSEYSHLQWTSVDRKKGGLGPMAIPMLADKTKAIARA 112 (167)
T ss_dssp TSEEEEEECSCSSCSSCCHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHSCGGGTCCCCCSSCEEECTTCHHHHH
T ss_pred CCeEEEEEcccccccccchhhHHHHHHHHHhhcCceEEEeecCCcHHhHHHHHhhHHHhcccccccccccccchhHHHHH
Confidence 457888998 9999999999999999988885 46777776653 2335777
Q ss_pred CCcc------ccceEEEE-eCCeEEEEEcC-----CCHHHHHHHHhhh
Q 005108 677 ENVR------IVPTFKIY-KNGSRMKEIVC-----PSRDMLEHSVRHY 712 (714)
Q Consensus 677 ~~v~------~~Pt~~~~-~~G~~~~~~~g-----~~~~~l~~~~~~~ 712 (714)
|+|. .+|+++|+ ++|+++...++ .+.+++.+.|+.+
T Consensus 113 y~v~~~~~g~~~r~tfvID~~G~Ir~~~~~~~~~~~~~~evL~~l~al 160 (167)
T d1e2ya_ 113 YGVLDEDSGVAYRGVFIIDPNGKLRQIIINDMPIGRNVEEVIRLVEAL 160 (167)
T ss_dssp HTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred cCCCcccCCCceeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHHHHH
Confidence 8873 45655445 89999876543 3567777666543
|
| >d2a4va1 c.47.1.10 (A:59-214) Peroxiredoxin dot5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Peroxiredoxin dot5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.20 E-value=0.00026 Score=61.68 Aligned_cols=73 Identities=12% Similarity=0.039 Sum_probs=55.7
Q ss_pred CCceEEEee-cCCCccccccchHHHHHHhhCCC-cEEEEEeccc---------------------CcchhhhCCccccc-
Q 005108 628 PGVSVVHFK-SASNLHCKQISPYVETLCGRYPS-INFLKVDIDE---------------------SPGVAHAENVRIVP- 683 (714)
Q Consensus 628 ~~~~vv~f~-a~~c~~C~~~~p~l~~l~~~~~~-~~~~~vd~d~---------------------~~~l~~~~~v~~~P- 683 (714)
...+++.|| +.||+.|....+.+.+...++.+ +.++-|..|. ..+++.+|||...|
T Consensus 33 ~~~vvlff~p~~~cp~C~~~~~~~~~~~~~~~~~~~~~~is~d~~~~~~~f~~~~~l~f~~L~D~~~~v~~~ygv~~~~~ 112 (156)
T d2a4va1 33 NRVVVFFVYPRASTPGSTRQASGFRDNYQELKEYAAVFGLSADSVTSQKKFQSKQNLPYHLLSDPKREFIGLLGAKKTPL 112 (156)
T ss_dssp CSEEEEEECSSSSSHHHHHHHHHHHHHHHHHTTTCEEEEEESCCHHHHHHHHHHHTCSSEEEECTTCHHHHHHTCBSSSS
T ss_pred ccEEEEEecccccCcchhhhhHHHHHHHHHHhhccceeeeccchhhhHHhhhcccCccceeccchHHHHHHHcCCCcccc
Confidence 335555556 78999999988999888888853 5566666553 55678899998777
Q ss_pred -----eEEEEeCCeEEEEEcCC
Q 005108 684 -----TFKIYKNGSRMKEIVCP 700 (714)
Q Consensus 684 -----t~~~~~~G~~~~~~~g~ 700 (714)
+++|.+||+.+.+.++.
T Consensus 113 ~~~~r~~~i~~dg~i~~~~~~~ 134 (156)
T d2a4va1 113 SGSIRSHFIFVDGKLKFKRVKI 134 (156)
T ss_dssp SCBCCEEEEEETTEEEEEEESC
T ss_pred CCeeEEEEEEECCeEEEEEEEe
Confidence 46677999999998876
|
| >d1beda_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: DsbA-like domain: Disulfide-bond formation facilitator (DsbA) species: Vibrio cholerae [TaxId: 666]
Probab=97.19 E-value=0.00021 Score=64.05 Aligned_cols=83 Identities=19% Similarity=0.175 Sum_probs=64.9
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhCCC-cEEEEEeccc-------------------------------------
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRYPS-INFLKVDIDE------------------------------------- 669 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~-~~~~~vd~d~------------------------------------- 669 (714)
..+.|+.|....|+.|+.+.+.+..+..++++ +.+.++.+.-
T Consensus 18 ~~~~Ivef~d~~Cp~C~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (181)
T d1beda_ 18 SSPVVSEFFSFYCPHCNTFEPIIAQLKQQLPEGAKFQKNHVSFMGGNMGQAMSKAYATMIALEVEDKMVPVMFNRIHTLR 97 (181)
T ss_dssp SSCEEEEEECTTCHHHHHHHHHHHHHHHTSCTTCEEEEEECSSSSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSC
T ss_pred CCCEEEEEECCCCccchhhhhhhhhHhhhcccccceeEEeccccccccHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhc
Confidence 35788999999999999999999999999874 5555443221
Q ss_pred --------------------------------------CcchhhhCCccccceEEEEeCCeEEEEEcCC-CHHHHHHHHh
Q 005108 670 --------------------------------------SPGVAHAENVRIVPTFKIYKNGSRMKEIVCP-SRDMLEHSVR 710 (714)
Q Consensus 670 --------------------------------------~~~l~~~~~v~~~Pt~~~~~~G~~~~~~~g~-~~~~l~~~~~ 710 (714)
...+++.+||.++|||+| ||+.+....+. +.+.|.+.|+
T Consensus 98 ~~~~~~~~l~~~~~~~gvd~~~~~~~~~~~~~~~~v~~~~~~~~~~gi~gTPt~~I--nGk~~v~~~~~~~~~~l~~~i~ 175 (181)
T d1beda_ 98 KPPKDEQELRQIFLDEGIDAAKFDAAYNGFAVDSMVRRFDKQFQDSGLTGVPAVVV--NNRYLVQGQSVKSLDEYFDLVN 175 (181)
T ss_dssp CCCCSHHHHHHHHHTTTCCHHHHHHHHTSHHHHHHHHHHHHHHHHHTCCSSSEEEE--TTTEEECGGGCCSHHHHHHHHH
T ss_pred cccchHHHHHHHHHHhcCCHHHHHHHHhChHHHHHHHHHHHHHHHhCCccccEEEE--CCEEeeCCCCCCCHHHHHHHHH
Confidence 223366889999999987 99977766777 8899988887
Q ss_pred hh
Q 005108 711 HY 712 (714)
Q Consensus 711 ~~ 712 (714)
.+
T Consensus 176 ~L 177 (181)
T d1beda_ 176 YL 177 (181)
T ss_dssp HH
T ss_pred HH
Confidence 64
|
| >d1r7ha_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Corynebacterium ammoniagenes [TaxId: 1697]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Glutaredoxin-like NRDH-redoxin species: Corynebacterium ammoniagenes [TaxId: 1697]
Probab=97.08 E-value=0.00035 Score=52.09 Aligned_cols=68 Identities=10% Similarity=0.188 Sum_probs=51.7
Q ss_pred EEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCcch---hhhCCccccceEEEEeCCeEEEEEcCCCHHHHHHH
Q 005108 632 VVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGV---AHAENVRIVPTFKIYKNGSRMKEIVCPSRDMLEHS 708 (714)
Q Consensus 632 vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~l---~~~~~v~~~Pt~~~~~~G~~~~~~~g~~~~~l~~~ 708 (714)
++.|..++|+.|.+....|++. ++.|..+|++++++. .+.+|++.+|+++ .+|+. +.|++.+.|++.
T Consensus 3 v~iYt~~~C~~C~~ak~~L~~~-----~i~~~~~~i~~~~~~~~~~~~~g~~tvP~i~--i~g~~---igGf~~d~l~~L 72 (74)
T d1r7ha_ 3 ITLYTKPACVQCTATKKALDRA-----GLAYNTVDISLDDEARDYVMALGYVQAPVVE--VDGEH---WSGFRPERIKQL 72 (74)
T ss_dssp EEEEECTTCHHHHHHHHHHHHT-----TCCCEEEETTTCHHHHHHHHHTTCBCCCEEE--ETTEE---EESCCHHHHHHH
T ss_pred EEEEeCCCChhHHHHHHHHHHc-----CCceEEEEccCCHHHHHHHHHhCCCCcCEEE--ECCEE---EeCCCHhHHHHh
Confidence 5678889999999998888653 567778888876654 4667999999864 48864 458888888765
Q ss_pred H
Q 005108 709 V 709 (714)
Q Consensus 709 ~ 709 (714)
+
T Consensus 73 ~ 73 (74)
T d1r7ha_ 73 Q 73 (74)
T ss_dssp H
T ss_pred h
Confidence 3
|
| >d1v58a1 c.47.1.9 (A:62-230) Thiol:disulfide interchange protein DsbG, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: DsbC/DsbG C-terminal domain-like domain: Thiol:disulfide interchange protein DsbG, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.08 E-value=0.0004 Score=61.35 Aligned_cols=80 Identities=13% Similarity=0.135 Sum_probs=61.3
Q ss_pred CceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEeccc---------------------------------------
Q 005108 629 GVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDE--------------------------------------- 669 (714)
Q Consensus 629 ~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~--------------------------------------- 669 (714)
.++|+.|....||.|+.+++.++++.... .+.+..+++.-
T Consensus 37 ~~tv~vF~D~~CP~C~~~~~~l~~l~~~~-~v~v~~~~~~~~~~~s~~~a~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 115 (169)
T d1v58a1 37 PVIVYVFADPFCPYCKQFWQQARPWVDSG-KVQLRTLLVGVIKPESPATAAAILASKDPAKTWQQYEASGGKLKLNVPAN 115 (169)
T ss_dssp SEEEEEEECTTCHHHHHHHHHHHHHHHTT-SEEEEEEECCCSSTTHHHHHHHHHHSSSHHHHHHHHHHTTTCCCCCCCSS
T ss_pred CEEEEEEECCCCcchHHHHHHHHHHHhcc-ceeEEEEecccCCcchHHHHHHHHhhhCHHHHHHHHHHhhhcccccccch
Confidence 36789999999999999999999987764 46665555321
Q ss_pred -----------CcchhhhCCccccceEEEE-eCCeEEEEEcCC-CHHHHHHHHh
Q 005108 670 -----------SPGVAHAENVRIVPTFKIY-KNGSRMKEIVCP-SRDMLEHSVR 710 (714)
Q Consensus 670 -----------~~~l~~~~~v~~~Pt~~~~-~~G~~~~~~~g~-~~~~l~~~~~ 710 (714)
+..+++.+||.++|||++. ++|+ ...+.|. +.++|+..|.
T Consensus 116 ~~~~~~~~i~~n~~~a~~~gi~gTPt~i~~~~~g~-~~~~~G~~~~~~l~~il~ 168 (169)
T d1v58a1 116 VSTEQMKVLSDNEKLMDDLGANVTPAIYYMSKENT-LQQAVGLPDQKTLNIIMG 168 (169)
T ss_dssp CCHHHHHHHHHHHHHHHHHTCCSSCEEEEEETTTE-EEEEESSCCHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCC-EEEecCCCCHHHHHHHhc
Confidence 3445778999999998886 5554 6678899 9888887653
|
| >d2f8aa1 c.47.1.10 (A:12-195) Glutathione peroxidase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Glutathione peroxidase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.01 E-value=0.00035 Score=62.26 Aligned_cols=42 Identities=10% Similarity=-0.035 Sum_probs=35.4
Q ss_pred CCCceEEEeecCCCccccccchHHHHHHhhCC--CcEEEEEecc
Q 005108 627 LPGVSVVHFKSASNLHCKQISPYVETLCGRYP--SINFLKVDID 668 (714)
Q Consensus 627 ~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~--~~~~~~vd~d 668 (714)
..++++|.+||+||+.|.+-++.|++|..+|. ++.++.+-++
T Consensus 23 kGKvvLivN~AS~Cg~t~~~y~~L~~L~~ky~~~g~~Il~fP~n 66 (184)
T d2f8aa1 23 RGKVLLIENVASLGGTTVRDYTQMNELQRRLGPRGLVVLGFPCN 66 (184)
T ss_dssp TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECC
T ss_pred CCCEEEEEEecccCCcchhhhHHHHHhhhhhcccceeEEEeecc
Confidence 35689999999999999999999999999985 4777766544
|
| >d1ttza_ c.47.1.1 (A:) Hypothetical protein XCC2852 {Xanthomonas campestris [TaxId: 339]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Hypothetical protein XCC2852 species: Xanthomonas campestris [TaxId: 339]
Probab=96.99 E-value=0.00051 Score=50.86 Aligned_cols=72 Identities=17% Similarity=0.213 Sum_probs=53.9
Q ss_pred EEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCcchhhhCCccccceEEEEeCCeEEEEEcCCCHHHHHHHHhh
Q 005108 632 VVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKEIVCPSRDMLEHSVRH 711 (714)
Q Consensus 632 vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~~~~g~~~~~l~~~~~~ 711 (714)
+..|..++|+-|.+....+. +..++.+..||+++++++..+|+++ ||.+. +.+|..+. -+++.++|+++|+.
T Consensus 2 ltLyt~~~C~LCe~A~~~l~----~~~~~~~~~vdI~~d~~l~~~y~~~-IPVl~-~~~~~~l~--w~fd~~~l~~~L~~ 73 (75)
T d1ttza_ 2 LTLYQRDDCHLCDQAVEALA----QARAGAFFSVFIDDDAALESAYGLR-VPVLR-DPMGRELD--WPFDAPRLRAWLDA 73 (75)
T ss_dssp EEEEECSSCHHHHHHHHHHH----HTTCCCEEEEECTTCHHHHHHHTTT-CSEEE-CTTCCEEE--SCCCHHHHHHHHHT
T ss_pred EEEECCCCccHHHHHHHHHH----hccCCcEEEEEccCCHHHHHHhCCe-eeEEE-ECCeeEEc--CccCHHHHHHHHhc
Confidence 56788899999987755443 2335789999999999999999987 79654 33444332 35699999999864
|
| >d1we0a1 c.47.1.10 (A:1-166) Alkyl hydroperoxide reductase AhpC {Amphibacillus xylanus [TaxId: 1449]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Alkyl hydroperoxide reductase AhpC species: Amphibacillus xylanus [TaxId: 1449]
Probab=96.97 E-value=0.001 Score=58.29 Aligned_cols=84 Identities=18% Similarity=0.150 Sum_probs=60.4
Q ss_pred CCceEEEeecC-CCccccccchHHHHHHhhCC--CcEEEEEeccc-------------------------CcchhhhCCc
Q 005108 628 PGVSVVHFKSA-SNLHCKQISPYVETLCGRYP--SINFLKVDIDE-------------------------SPGVAHAENV 679 (714)
Q Consensus 628 ~~~~vv~f~a~-~c~~C~~~~p~l~~l~~~~~--~~~~~~vd~d~-------------------------~~~l~~~~~v 679 (714)
.+.+|+.||.. ||+.|....+.+.++..++. ++.++-|.+|. ..+++++|||
T Consensus 31 GK~vvl~F~p~~~~p~C~~e~~~~~~~~~~f~~~g~~vv~IS~D~~~~~~~~~~~~~~~~~~~fpll~D~~~~v~~~ygv 110 (166)
T d1we0a1 31 GKWSIVVFYPADFSFVCPTELEDVQKEYAELKKLGVEVYSVSTDTHFVHKAWHENSPAVGSIEYIMIGDPSQTISRQFDV 110 (166)
T ss_dssp SSEEEEEECSCTTCSSCTHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHHSCHHHHTCCSEEEECTTCHHHHHTTC
T ss_pred CCeEEEEEecccCCcHHHHHHHHHHHHHHhhcccceEEEecccccHHHHHHHhhhhhhhcccccccccCcccHHHHHhCC
Confidence 34788888865 99999999999999988884 57777776653 4456889998
Q ss_pred c------ccce-EEEEeCCeEEEEEcCC-----CHHHHHHHHhh
Q 005108 680 R------IVPT-FKIYKNGSRMKEIVCP-----SRDMLEHSVRH 711 (714)
Q Consensus 680 ~------~~Pt-~~~~~~G~~~~~~~g~-----~~~~l~~~~~~ 711 (714)
. ..|+ |+|-++|.++...++. +.+++.+.|+.
T Consensus 111 ~~~~~~~~~r~tfvID~~G~I~~~~i~~~~~~r~~~eil~~lka 154 (166)
T d1we0a1 111 LNEETGLADRGTFIIDPDGVIQAIEINADGIGRDASTLINKVKA 154 (166)
T ss_dssp EETTTTEECEEEEEECTTSBEEEEEEECTTSCCCTTHHHHHHHH
T ss_pred CccccCcccceEEEECCCCcEEEEEEcCCCCCCCHHHHHHHHHh
Confidence 6 3344 4555999998876654 44566555543
|
| >d1xvwa1 c.47.1.10 (A:1-153) Putative peroxiredoxin Rv2238c/MT2298 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Putative peroxiredoxin Rv2238c/MT2298 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.89 E-value=0.0011 Score=57.41 Aligned_cols=85 Identities=12% Similarity=0.064 Sum_probs=60.4
Q ss_pred CceEEEeecCCCccccccchHHHHHHhhCC--CcEEEEEeccc-----------------------CcchhhhCCccc--
Q 005108 629 GVSVVHFKSASNLHCKQISPYVETLCGRYP--SINFLKVDIDE-----------------------SPGVAHAENVRI-- 681 (714)
Q Consensus 629 ~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~--~~~~~~vd~d~-----------------------~~~l~~~~~v~~-- 681 (714)
.++++.|++.||+.|....+.+.++..++. ++.++-|..|. ...+++.|+|..
T Consensus 31 ~vvl~~~~~~~cp~C~~e~~~l~~~~~~~~~~~~~vi~vs~d~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ygv~~~~ 110 (153)
T d1xvwa1 31 NVLLVFFPLAFTGICQGELDQLRDHLPEFENDDSAALAISVGPPPTHKIWATQSGFTFPLLSDFWPHGAVSQAYGVFNEQ 110 (153)
T ss_dssp EEEEEECSCTTSSHHHHHHHHHHHTGGGTSSSSEEEEEEESCCHHHHHHHHHHHTCCSCEEECTTTTTHHHHHTTCEETT
T ss_pred cEEEEecccccccchhhhhhhhhhhhhhhcccccccccccchhhhHHHHHhhhhccceeEEecccccchhHHHhhhhhhc
Confidence 355666779999999999999999888885 47777776553 344678898853
Q ss_pred ----cceEEEE-eCCeEEEEEcCC-----CHHHHHHHHhhhc
Q 005108 682 ----VPTFKIY-KNGSRMKEIVCP-----SRDMLEHSVRHYS 713 (714)
Q Consensus 682 ----~Pt~~~~-~~G~~~~~~~g~-----~~~~l~~~~~~~~ 713 (714)
.|+++|+ ++|+++...++. ....+.+.|+.+.
T Consensus 111 ~g~~~r~tfvID~~G~I~~~~~~~~~~~~~~~~~~~~L~aL~ 152 (153)
T d1xvwa1 111 AGIANRGTFVVDRSGIIRFAEMKQPGEVRDQRLWTDALAALT 152 (153)
T ss_dssp TTEECSEEEEECTTSBEEEEEECCTTCCCCHHHHHHHHHHTC
T ss_pred cCceeeeEEEECCCCEEEEEEEeCCCcccCHHHHHHHHHhhc
Confidence 3344444 999988765533 4677777777653
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=96.86 E-value=0.31 Score=49.44 Aligned_cols=304 Identities=12% Similarity=-0.044 Sum_probs=163.4
Q ss_pred CCCCcHHHH---HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---C---
Q 005108 237 ICGGDAEEL---KRMGNELYRKGCFGEALSMYDKAISLAPRNAAFRSNRAAALTGLGRIGEAVKECEEAVRLD---P--- 307 (714)
Q Consensus 237 ~~p~~~~~~---~~~g~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p--- 307 (714)
-+|+.+..- ..--..+.+.+++++.+.+|. ..|.+....+..+.++...|+.++|...+..+.... |
T Consensus 64 ~~p~~P~~~~lr~~~l~~L~~~~~w~~~~~~~~----~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~~p~~c 139 (450)
T d1qsaa1 64 ANPTLPPARTLQSRFVNELARREDWRGLLAFSP----EKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNAC 139 (450)
T ss_dssp HCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHCC----SCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHH
T ss_pred HCCCChhHHHHHHHHHHHHHhccCHHHHHHhcc----CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchHH
Confidence 455555432 222345566677766555443 356677777777777888888877777666554321 1
Q ss_pred ------------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCCC------------ChHHHHHHH-------HHHHHHH
Q 005108 308 ------------NYWRAHQRLGSLLVRLGQVENARRHLCLSGQQA------------DPTEVHRLQ-------VVEKHLS 356 (714)
Q Consensus 308 ------------~~~~a~~~la~~~~~~g~~~~A~~~~~~al~~~------------~~~~~~~l~-------~~~~~~~ 356 (714)
-....+...+..+...|++..|...+..+-... .+....... .......
T Consensus 140 ~~l~~~~~~~~~lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~~p~~~~~~~~~~~~~~~~~~~~~ 219 (450)
T d1qsaa1 140 DKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTVLTFARTTGATDFTRQMAA 219 (450)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhhHHHHHhhCChhHHHHHHHHHHHHhChHhHHHHHhcCCCChhhhHHHH
Confidence 123334455666666777777766654321100 000000000 0000111
Q ss_pred HhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH---HHHHHHHcCCHHHHHHHhhccccCCCCCCCchhhhhhhhhhh
Q 005108 357 KCTDARKVGDWKSALREGDAAIAAGADFSPQLSMC---RVEALLKLHQLEDAESSLSNIPKIEPSTVSSSQTRFFGMLSE 433 (714)
Q Consensus 357 ~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~---la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 433 (714)
.+..-....+.+.|...+.......+......... ++..+...+..+.+...+..........
T Consensus 220 ~~l~rla~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~-------------- 285 (450)
T d1qsaa1 220 VAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQST-------------- 285 (450)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCH--------------
T ss_pred HHHHHHhccChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccccch--------------
Confidence 12222234566777777766655444333332222 2222233455566666665554433332
Q ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHHHHHhHHHHHHHHHHHhHHhhCcCHHHHHHHHHHhhccCCC-
Q 005108 434 AYTFFVRAQIEMALGRFENAVTAAEKAGQIDPRNVEVAVLLNNVKLVARARARGNDLFKSERFTEACQAYGEGLRFDPS- 512 (714)
Q Consensus 434 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~- 512 (714)
......++ ..+..+++..+...++.+-..........+- .|..+...|+.++|..+|..+... ++
T Consensus 286 ~~~~w~~~-~al~~~~~~~~~~~~~~l~~~~~~~~r~~YW------------~gRa~~~~G~~~~A~~~~~~~a~~-~~f 351 (450)
T d1qsaa1 286 SLIERRVR-MALGTGDRRGLNTWLARLPMEAKEKDEWRYW------------QADLLLERGREAEAKEILHQLMQQ-RGF 351 (450)
T ss_dssp HHHHHHHH-HHHHHTCHHHHHHHHHHSCTTGGGSHHHHHH------------HHHHHHHTTCHHHHHHHHHHHHTS-CSH
T ss_pred HHHHHHHH-HHHHcCChHHHHHHHHhcCcccccHHHHHHH------------HHHHHHHcCChhhHHHHHHHHhcC-CCh
Confidence 11222222 3445677777777776543222222322222 377788888888888888776542 11
Q ss_pred -------------------------C---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccH
Q 005108 513 -------------------------N---SVLYCNRAACWFKLGQWERSVEDSNQALLIQPNYTKALLRRAASNSKLEKW 564 (714)
Q Consensus 513 -------------------------~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 564 (714)
. ...-...+..+...|+..+|...+..++... +..-...++.+..+.|.+
T Consensus 352 YG~LAa~~Lg~~~~~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~~--~~~~~~~la~lA~~~g~~ 429 (450)
T d1qsaa1 352 YPMVAAQRIGEEYELKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSK--SKTEQAQLARYAFNNQWW 429 (450)
T ss_dssp HHHHHHHHTTCCCCCCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcCCCCCCCcCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhCC--CHHHHHHHHHHHHHCCCh
Confidence 0 0112345677788888888888888776532 455667778888888888
Q ss_pred HHHHHHHHHH
Q 005108 565 ADAVRDFEVL 574 (714)
Q Consensus 565 ~eA~~~~~~a 574 (714)
+.|+....++
T Consensus 430 ~~aI~a~~~~ 439 (450)
T d1qsaa1 430 DLSVQATIAG 439 (450)
T ss_dssp HHHHHHHHHT
T ss_pred hHHHHHHHHH
Confidence 8888776655
|
| >d1h75a_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Glutaredoxin-like NRDH-redoxin species: Escherichia coli [TaxId: 562]
Probab=96.78 E-value=0.00053 Score=51.32 Aligned_cols=66 Identities=17% Similarity=0.323 Sum_probs=50.4
Q ss_pred EEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCcchh---hhCCccccceEEEEeCCeEEEEEcCCCHHHHHH
Q 005108 632 VVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVA---HAENVRIVPTFKIYKNGSRMKEIVCPSRDMLEH 707 (714)
Q Consensus 632 vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~l~---~~~~v~~~Pt~~~~~~G~~~~~~~g~~~~~l~~ 707 (714)
++.|..+||+.|.+....|++. ++.|..+|++++++.. +..|.+.+|++++ +|+. +.|+.++.|++
T Consensus 3 i~iYs~~~C~~C~~ak~~L~~~-----~i~y~~~~i~~~~~~~~~~~~~g~~tvP~i~i--~~~~---i~Gf~~d~i~~ 71 (76)
T d1h75a_ 3 ITIYTRNDCVQCHATKRAMENR-----GFDFEMINVDRVPEAAEALRAQGFRQLPVVIA--GDLS---WSGFRPDMINR 71 (76)
T ss_dssp EEEEECTTCHHHHHHHHHHHHT-----TCCCEEEETTTCHHHHHHHHHTTCCSSCEEEE--TTEE---EESCCHHHHGG
T ss_pred EEEEeCCCCccHHHHHHHHHhc-----CceeEEEeecCCHHHHHHHHhcCCCCCCEEEE--CCEE---EECCCHHHHHH
Confidence 5678889999999998888653 5678888998877643 4569999999775 6654 45888887754
|
| >d1z6ma1 c.47.1.13 (A:1-172) Hypothetical protein EF0770 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: DsbA-like domain: Hypothetical protein EF0770 species: Enterococcus faecalis [TaxId: 1351]
Probab=96.75 E-value=0.00054 Score=60.68 Aligned_cols=78 Identities=17% Similarity=0.189 Sum_probs=58.8
Q ss_pred CceEEEeecCCCccccccchHHHHHHhhCCC---cEEEEEeccc------------------------------------
Q 005108 629 GVSVVHFKSASNLHCKQISPYVETLCGRYPS---INFLKVDIDE------------------------------------ 669 (714)
Q Consensus 629 ~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~---~~~~~vd~d~------------------------------------ 669 (714)
.+.|+.|....||+|+.+.+.+..+..++++ +.++.+...-
T Consensus 25 ~v~I~ef~d~~Cp~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (172)
T d1z6ma1 25 PVKMIEFINVRCPYCRKWFEESEELLAQSVKSGKVERIIKLFDKEKESLQRGNVMHHYIDYSAPEQALSALHKMFATQDE 104 (172)
T ss_dssp SEEEEEEECTTCHHHHHHHHHHHHHHHHHHHTTSEEEEEEECCCCSTTTHHHHHHHTTCCTTCHHHHHHHHHHHHHTHHH
T ss_pred CEEEEEEECCCCHhHHHHHHHHhhhhhhhccccceeeeeccccccchhhHHHHHHHHHHHHccchhHHHHHHHHHHhccc
Confidence 3678999999999999999999999888752 4444443221
Q ss_pred ------------------------------CcchhhhCCccccceEEEEeCCeEEEEEcCC-CHHHHHHHHhh
Q 005108 670 ------------------------------SPGVAHAENVRIVPTFKIYKNGSRMKEIVCP-SRDMLEHSVRH 711 (714)
Q Consensus 670 ------------------------------~~~l~~~~~v~~~Pt~~~~~~G~~~~~~~g~-~~~~l~~~~~~ 711 (714)
..+.+..+||.++|||+| ||+.+ .|. +.++|++.|++
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~a~~~gI~gTPt~~I--ng~~~---~g~~~~~~~~~~id~ 172 (172)
T d1z6ma1 105 WGNLTLEEVATYAEKNLGLKEQKDATLVSAVIAEANAAHIQFVPTIII--GEYIF---DESVTEEELRGYIEK 172 (172)
T ss_dssp HTTSCHHHHHHHHHHTSCCCCCCCHHHHHHHHHHHHHHTCCSSCEEEE--TTEEE---CTTCCHHHHHHHHTC
T ss_pred cchHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHcCCCcCCEEEE--CCEEe---cCCCCHHHHHHHHcC
Confidence 111245689999999876 99864 577 99999999875
|
| >d1egoa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Glutaredoxin (Grx, thioltransferase) species: Escherichia coli [TaxId: 562]
Probab=96.73 E-value=0.00057 Score=52.43 Aligned_cols=62 Identities=18% Similarity=0.249 Sum_probs=47.9
Q ss_pred EEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCcchhh----h--CCccccceEEEEeCCeEEE
Q 005108 632 VVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAH----A--ENVRIVPTFKIYKNGSRMK 695 (714)
Q Consensus 632 vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~l~~----~--~~v~~~Pt~~~~~~G~~~~ 695 (714)
++.|..++|+.|.+....|+++...+.++.+..+|++..++..+ . .+++.+|.+++ +|+.+.
T Consensus 3 vviysk~~Cp~C~~aK~ll~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~tvPqIfi--~g~~IG 70 (85)
T d1egoa_ 3 TVIFGRSGCPYCVRAKDLAEKLSNERDDFQYQYVDIRAEGITKEDLQQKAGKPVETVPQIFV--DQQHIG 70 (85)
T ss_dssp EEEECCTTSTHHHHHHHHHHHHHHHHSSCEEEEECHHHHTCCSHHHHHHTCCCSCCSCEEEE--TTEEEE
T ss_pred EEEEeCCCCHhHHHHHHHHHHcCCCCCCceEEEEecCCCHHHHHHHHHHhcCCCCCCCEEEE--CCEEEE
Confidence 57788899999999999999999888899999998876544322 2 24678888644 887553
|
| >d1qxha_ c.47.1.10 (A:) Thiol peroxidase Tpx {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thiol peroxidase Tpx species: Escherichia coli [TaxId: 562]
Probab=96.64 E-value=0.0025 Score=55.69 Aligned_cols=73 Identities=14% Similarity=0.088 Sum_probs=53.2
Q ss_pred CCceEEEee-cCCCccccccchHHHHHHhhCCCcEEEEEeccc-----------------------CcchhhhCCccc--
Q 005108 628 PGVSVVHFK-SASNLHCKQISPYVETLCGRYPSINFLKVDIDE-----------------------SPGVAHAENVRI-- 681 (714)
Q Consensus 628 ~~~~vv~f~-a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~-----------------------~~~l~~~~~v~~-- 681 (714)
.+.+|+.|| +.||+.|....+.+.++..++.++.++-|.++. ..+++++|||..
T Consensus 44 GK~vvl~f~~~~~~p~C~~~~~~l~~~~~~~~~~~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ygv~~~~ 123 (164)
T d1qxha_ 44 GKRKVLNIFPSIDTGVCAASVRKFNQLATEIDNTVVLCISADLPFAQSRFCGAEGLNNVITLSTFRNAEFLQAYGVAIAD 123 (164)
T ss_dssp TSEEEEEECSCSCSSCCCHHHHHHHHHHHTSTTEEEEEEESSCHHHHTTCCSSTTCTTEEEEECTTCHHHHHHTTCBBCS
T ss_pred CCeEEEEEecchhcccchHHHHHHHHHHHhhccceeeeEEcCCHHHHHHHHHHhCCCcceeeccccchhhHHhcCeEeec
Confidence 346777777 679999999999999998888888877776552 344677888741
Q ss_pred -------cceEEEE-eCCeEEEEEcCC
Q 005108 682 -------VPTFKIY-KNGSRMKEIVCP 700 (714)
Q Consensus 682 -------~Pt~~~~-~~G~~~~~~~g~ 700 (714)
.|+++++ ++|+++...+..
T Consensus 124 ~~~~g~~~ra~fvID~~G~I~y~~~~~ 150 (164)
T d1qxha_ 124 GPLKGLAARAVVVIDENDNVIFSQLVD 150 (164)
T ss_dssp STTTTSBCCEEEEECTTSBEEEEEECS
T ss_pred CcccCcccCEEEEEcCCCEEEEEEEcC
Confidence 2555555 999998765544
|
| >d1a8la1 c.47.1.2 (A:1-119) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=96.61 E-value=0.003 Score=51.23 Aligned_cols=82 Identities=17% Similarity=0.255 Sum_probs=63.8
Q ss_pred ceEEEeec-CCCccccccchHHHHHHhhCCCcEEEEEecc--cCcchhhhCCccccceEEEEeCCeEE-EEEcCC-CHHH
Q 005108 630 VSVVHFKS-ASNLHCKQISPYVETLCGRYPSINFLKVDID--ESPGVAHAENVRIVPTFKIYKNGSRM-KEIVCP-SRDM 704 (714)
Q Consensus 630 ~~vv~f~a-~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d--~~~~l~~~~~v~~~Pt~~~~~~G~~~-~~~~g~-~~~~ 704 (714)
+.++.|.. ..|+.|..+...+++++..-+.+.+..+|.+ +..++++.|+|...|+|.|.++|+.. -++.|. .=++
T Consensus 24 V~l~~~~~~~~~~~~~e~~~ll~ela~lSdki~~~~~~~~~~e~~~~~~~~~ver~Ps~~i~~~g~~~gIrF~GiP~GhE 103 (119)
T d1a8la1 24 VKLIVFVRKDHCQYCDQLKQLVQELSELTDKLSYEIVDFDTPEGKELAKRYRIDRAPATTITQDGKDFGVRYFGLPAGHE 103 (119)
T ss_dssp EEEEEEECSSSCTTHHHHHHHHHHHHTTCTTEEEEEEETTSHHHHHHHHHTTCCSSSEEEEEETTBCCSEEEESCCCTTH
T ss_pred EEEEEEecCCCchhHHHHHHHHHHHHhhCCCeEEEEeccCcchhhhHHHhhccccCceEEEecCCcccceEEEeccCchh
Confidence 44555554 4699999999999999887666777666655 46689999999999999999998765 477888 6677
Q ss_pred HHHHHhh
Q 005108 705 LEHSVRH 711 (714)
Q Consensus 705 l~~~~~~ 711 (714)
+..+|.-
T Consensus 104 f~Slila 110 (119)
T d1a8la1 104 FAAFLED 110 (119)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7777654
|
| >d1zofa1 c.47.1.10 (A:1-170) Thioredoxin reductase TsaA {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin reductase TsaA species: Helicobacter pylori [TaxId: 210]
Probab=96.43 E-value=0.0036 Score=54.89 Aligned_cols=83 Identities=16% Similarity=0.190 Sum_probs=58.9
Q ss_pred CceEEEee-cCCCccccccchHHHHHHhhCC--CcEEEEEeccc----------------------------CcchhhhC
Q 005108 629 GVSVVHFK-SASNLHCKQISPYVETLCGRYP--SINFLKVDIDE----------------------------SPGVAHAE 677 (714)
Q Consensus 629 ~~~vv~f~-a~~c~~C~~~~p~l~~l~~~~~--~~~~~~vd~d~----------------------------~~~l~~~~ 677 (714)
+.+++.|| +.||+.|....+.+.+...++. ++.++-|..|. ..+++++|
T Consensus 34 ~~vvl~FyP~~~tp~C~~e~~~~~~~~~~f~~~g~~Vvgis~d~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~v~~~y 113 (170)
T d1zofa1 34 NGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEKGFNVIGVSIDSEQVHFAWKNTPVEKGGIGQVSFPMVADITKSISRDY 113 (170)
T ss_dssp SEEEEEECSCTTCSSCCTHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCCCSSCEEECTTSHHHHHT
T ss_pred CEEEEEEEccccCCcCHHHHHHHHHhHHhhccCCeeEecccccchhhHHHHHhhhhhcccccCcccccccccccHHHHHc
Confidence 46888888 8999999999888888777763 57777776653 34567899
Q ss_pred Ccc-----ccce-EEEEeCCeEEEEEcCC-----CHHHHHHHHhh
Q 005108 678 NVR-----IVPT-FKIYKNGSRMKEIVCP-----SRDMLEHSVRH 711 (714)
Q Consensus 678 ~v~-----~~Pt-~~~~~~G~~~~~~~g~-----~~~~l~~~~~~ 711 (714)
||. ..|+ |+|-++|+++...++. +.+++.+.|+.
T Consensus 114 gv~~~~~~~~r~tfvID~~G~I~~~~~~~~~~~~~~~eiL~~l~a 158 (170)
T d1zofa1 114 DVLFEEAIALRGAFLIDKNMKVRHAVINDLPLGRNADEMLRMVDA 158 (170)
T ss_dssp TCEETTTEECEEEEEEETTTEEEEEEEESSSCCCHHHHHHHHHHH
T ss_pred CCCccccceeEEEEEEcCCCeEEEEEEeCCCCCCCHHHHHHHHHH
Confidence 985 4565 4555999998655432 45666655554
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=96.37 E-value=0.062 Score=52.20 Aligned_cols=33 Identities=18% Similarity=0.154 Sum_probs=17.0
Q ss_pred HHHHHHHhCcHHHHHHHHHHHhccCCCCHHHHH
Q 005108 440 RAQIEMALGRFENAVTAAEKAGQIDPRNVEVAV 472 (714)
Q Consensus 440 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 472 (714)
....|...|.+++.+.+++.++...+.+...+.
T Consensus 105 ~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~ 137 (336)
T d1b89a_ 105 LINYYQDRGYFEELITMLEAALGLERAHMGMFT 137 (336)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHH
T ss_pred HHHHHHHcCChHHHHHHHHHHHcCCccchHHHH
Confidence 344445555555555555555555555444433
|
| >d2zcta1 c.47.1.10 (A:6-242) Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Peroxiredoxin species: Aeropyrum pernix [TaxId: 56636]
Probab=96.34 E-value=0.0038 Score=57.57 Aligned_cols=85 Identities=12% Similarity=0.074 Sum_probs=62.5
Q ss_pred CCceEEEee-cCCCccccccchHHHHHHhhCC--CcEEEEEeccc---------------------------CcchhhhC
Q 005108 628 PGVSVVHFK-SASNLHCKQISPYVETLCGRYP--SINFLKVDIDE---------------------------SPGVAHAE 677 (714)
Q Consensus 628 ~~~~vv~f~-a~~c~~C~~~~p~l~~l~~~~~--~~~~~~vd~d~---------------------------~~~l~~~~ 677 (714)
+..+|+.|| +.||+.|....+.+.++..++. ++.++-|.+|. ..+++++|
T Consensus 29 Gk~vVLff~P~dftpvCttEl~~~~~~~~ef~~~g~~vigiS~Ds~~sh~~w~~~~~~~~~~~l~fpllsD~~~~vak~y 108 (237)
T d2zcta1 29 GKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRLGVDLIGLSVDSVFSHIKWKEWIERHIGVRIPFPIIADPQGTVARRL 108 (237)
T ss_dssp TCEEEEEEESCSSCHHHHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHHHHHHHHCCCCCSCEEECGGGHHHHHT
T ss_pred CCEEEEEEECCCCCccCHHHHHHHHhhhhhhccCCcceeeccCCcHHHHHHHhhhhhhhcccccccccccCcchHHHHHc
Confidence 446677776 8999999998888888777773 57777776552 44578899
Q ss_pred Cc-------cccceEEEE-eCCeEEEEEcC-----CCHHHHHHHHhhh
Q 005108 678 NV-------RIVPTFKIY-KNGSRMKEIVC-----PSRDMLEHSVRHY 712 (714)
Q Consensus 678 ~v-------~~~Pt~~~~-~~G~~~~~~~g-----~~~~~l~~~~~~~ 712 (714)
|| ..+|+++|+ ++|.+...+.. .+.+++.+.|+.+
T Consensus 109 Gv~~~~~~~~~~RatFIIDpdG~Ir~~~~~~~~~gR~~dEiLr~l~aL 156 (237)
T d2zcta1 109 GLLHAESATHTVRGVFIVDARGVIRTMLYYPMELGRLVDEILRIVKAL 156 (237)
T ss_dssp TCC----CCTTCCEEEEECTTSBEEEEEECCTTBCCCHHHHHHHHHHH
T ss_pred CCccccccccceeeeEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHH
Confidence 98 467876666 99998776553 3677787777654
|
| >d1xzoa1 c.47.1.10 (A:3-174) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.33 E-value=0.0079 Score=52.82 Aligned_cols=86 Identities=15% Similarity=0.199 Sum_probs=59.3
Q ss_pred CCceEEEeecCCCc-cccccchHHHHHHhhC----CCcEEEEEeccc---Ccch----h---------------------
Q 005108 628 PGVSVVHFKSASNL-HCKQISPYVETLCGRY----PSINFLKVDIDE---SPGV----A--------------------- 674 (714)
Q Consensus 628 ~~~~vv~f~a~~c~-~C~~~~p~l~~l~~~~----~~~~~~~vd~d~---~~~l----~--------------------- 674 (714)
++++++.||..||+ .|....+.+.++..++ .++.++.|.+|- .++. +
T Consensus 31 Gk~vvl~F~~t~Cp~~C~~~~~~l~~~~~~~~~~~~~v~~v~isiDp~~Dtp~~l~~y~~~~~~~~~~w~~lt~~~~~~~ 110 (172)
T d1xzoa1 31 GEVWLADFIFTNCETICPPMTAHMTDLQKKLKAENIDVRIISFSVDPENDKPKQLKKFAANYPLSFDNWDFLTGYSQSEI 110 (172)
T ss_dssp TCCEEEEEECSCCSSCCCSHHHHHHHHHHHHHHTTCCCEEEEEESCTTTCCHHHHHHHHTTSCCCGGGEEEEBCSCHHHH
T ss_pred CCEEEEEEecccccccccccchhhhhhhhhhccccccccccccccccccchHHHHHHHHHHhccccccceeeccchHHHH
Confidence 56899999999997 6999999998887765 358888877652 1111 1
Q ss_pred -----hhCCc-----------cccceEEEE-eCCeEEEEEcCC---CHHHHHHHHhhhc
Q 005108 675 -----HAENV-----------RIVPTFKIY-KNGSRMKEIVCP---SRDMLEHSVRHYS 713 (714)
Q Consensus 675 -----~~~~v-----------~~~Pt~~~~-~~G~~~~~~~g~---~~~~l~~~~~~~~ 713 (714)
..|++ .+.|.++++ ++|+++..+.|. ..++|.+.|+.++
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~H~~~~~liD~~G~i~~~~~g~~~~~~~~l~~dik~~~ 169 (172)
T d1xzoa1 111 EEFALKSFKAIVKKPEGEDQVIHQSSFYLVGPDGKVLKDYNGVENTPYDDIISDVKSAS 169 (172)
T ss_dssp HHHHHHHHCCCCCCCSSCCSCCSCCEEEEECTTSEEEEEEESSSSCCHHHHHHHHHHHT
T ss_pred HHHHHhheeeEEeccCCCceEeeeeEEEEEcCCCeEEEEEcCCCCCCHHHHHHHHHHHH
Confidence 11211 123455555 999999888776 5678888777654
|
| >d1iloa_ c.47.1.1 (A:) MTH985, a thioredoxin {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: MTH985, a thioredoxin species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=96.16 E-value=0.0036 Score=45.93 Aligned_cols=71 Identities=10% Similarity=0.201 Sum_probs=52.4
Q ss_pred EEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCcchhhhCCccccceEEEEeCCeEEEEEcCC--CHHHHHHHH
Q 005108 633 VHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSRMKEIVCP--SRDMLEHSV 709 (714)
Q Consensus 633 v~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~~~~g~--~~~~l~~~~ 709 (714)
+....+.|..|.+....+++...+.. +..--.++++-.+++ .|||.++|.++| ||+.+. .|. +.++|+++|
T Consensus 4 IkVlg~gC~~C~~~~~~v~~a~~e~g-i~a~v~kv~d~~ei~-~ygVmstPalvI--dg~vv~--~G~vPs~~ei~~~L 76 (77)
T d1iloa_ 4 IQIYGTGCANCQMLEKNAREAVKELG-IDAEFEKIKEMDQIL-EAGLTALPGLAV--DGELKI--MGRVASKEEIKKIL 76 (77)
T ss_dssp EEEECSSSSTTHHHHHHHHHHHHHTT-CCEEEEEECSHHHHH-HHTCSSSSCEEE--TTEEEE--CSSCCCHHHHHHHC
T ss_pred EEEeCCCCccHHHHHHHHHHHHHHcC-CceEEEEeCCHHHHH-HcCCcCCCEEEE--CCEEEE--EecCCCHHHHHHHh
Confidence 34457899999999999998877753 332223445666676 599999999865 888765 453 999999876
|
| >d1wp0a1 c.47.1.10 (A:138-297) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.09 E-value=0.0091 Score=51.43 Aligned_cols=86 Identities=14% Similarity=0.092 Sum_probs=56.1
Q ss_pred CCCceEEEeecCCCc-cccccchHHHHHHhhC---C---CcEEEEEeccc----------------------------Cc
Q 005108 627 LPGVSVVHFKSASNL-HCKQISPYVETLCGRY---P---SINFLKVDIDE----------------------------SP 671 (714)
Q Consensus 627 ~~~~~vv~f~a~~c~-~C~~~~p~l~~l~~~~---~---~~~~~~vd~d~----------------------------~~ 671 (714)
.++++++.||.+||+ .|....+.+.++..++ . .+.+..+.++. ..
T Consensus 19 ~GK~vll~F~~t~C~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (160)
T d1wp0a1 19 LGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPERDTKEAIANYVKEFSPKLVGLTGTREEVD 98 (160)
T ss_dssp TTSEEEEEEECTTCSSHHHHHHHHHHHHHHHHHHCTTSCCEEEEEEESCTTTCCHHHHHHHHHTTCTTCEEEECCHHHHH
T ss_pred CCCEEEEEEECCCCccccccchHHHHHHHHHhhcccccccccccccccCCCcccHHHHHHHHhhcCCCcccccCchHHhh
Confidence 356999999999997 5888888887776654 1 23333333321 11
Q ss_pred chhhhCCc---------------cccceEEEE-eCCeEEEEEcCC-CHHHHHHHHhhh
Q 005108 672 GVAHAENV---------------RIVPTFKIY-KNGSRMKEIVCP-SRDMLEHSVRHY 712 (714)
Q Consensus 672 ~l~~~~~v---------------~~~Pt~~~~-~~G~~~~~~~g~-~~~~l~~~~~~~ 712 (714)
.+..+|++ ...++++++ ++|+++..+.+. +.+++.+.|+++
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~LId~~G~i~~~~~~~~~~~~i~~~I~~~ 156 (160)
T d1wp0a1 99 QVARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGPDGEFLDYFGQNKRKGEIAASIATH 156 (160)
T ss_dssp HHHHHTTCCEEECCCCGGGCCCEEECCEEEEECTTSCEEEEEETTCCHHHHHHHHHHH
T ss_pred HHhhhhheeeecccCCCCCCceEeccceEEEECCCCcEEEEECCCCCHHHHHHHHHHH
Confidence 23445543 344566666 999999988656 888887777654
|
| >d1psqa_ c.47.1.10 (A:) Probable thiol peroxidase PsaD {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Probable thiol peroxidase PsaD species: Streptococcus pneumoniae [TaxId: 1313]
Probab=96.02 E-value=0.0063 Score=52.90 Aligned_cols=84 Identities=10% Similarity=0.014 Sum_probs=59.2
Q ss_pred CCceEEEee-cCCCccccccchHHHHHHhhCCCcEEEEEeccc-----------------------CcchhhhCCccccc
Q 005108 628 PGVSVVHFK-SASNLHCKQISPYVETLCGRYPSINFLKVDIDE-----------------------SPGVAHAENVRIVP 683 (714)
Q Consensus 628 ~~~~vv~f~-a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~-----------------------~~~l~~~~~v~~~P 683 (714)
.+.+|+.|| +.||+.|....+.+.....++.++.++-|.++. ...+++.|||..-+
T Consensus 42 gk~~vl~f~~~~~~p~C~~~~~~l~~~~~~~~~~~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ygv~~~~ 121 (163)
T d1psqa_ 42 GKKKVLSVVPSIDTGICSTQTRRFNEELAGLDNTVVLTVSMDLPFAQKRWCGAEGLDNAIMLSDYFDHSFGRDYALLINE 121 (163)
T ss_dssp TSEEEEEECSCTTSHHHHHHHHHHHHHTTTCTTEEEEEEESSCHHHHHHHHHHHTCTTSEEEECTTTCHHHHHHTCBCTT
T ss_pred CcEEEEEeccccccccchhhHHHHHHHHHhhcccceEEEEeccHHHHHHHHHHcCCcceeeeccccchhHHHhheeeccc
Confidence 346777777 679999999999999888888888888777663 23457788875322
Q ss_pred -------eEEEEeCCeEEEEEcCC------CHHHHHHHHhh
Q 005108 684 -------TFKIYKNGSRMKEIVCP------SRDMLEHSVRH 711 (714)
Q Consensus 684 -------t~~~~~~G~~~~~~~g~------~~~~l~~~~~~ 711 (714)
+|+|-++|.++...++. +.+.+.+.|+.
T Consensus 122 ~~~~~Ra~fvID~~G~I~y~~~~~~~~~~~~~~~il~alk~ 162 (163)
T d1psqa_ 122 WHLLARAVFVLDTDNTIRYVEYVDNINSEPNFEAAIAAAKA 162 (163)
T ss_dssp TCSBCCEEEEECTTCBEEEEEECSBTTSCCCHHHHHHHHHH
T ss_pred ccceeEEEEEECCCCEEEEEEEcCCCCCCCCHHHHHHHHhc
Confidence 34555999998764433 34566666654
|
| >d1zyea1 c.47.1.10 (A:6-163) Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Peroxiredoxin-3 (AOP-1, SP-22) species: Cow (Bos taurus) [TaxId: 9913]
Probab=95.98 E-value=0.0097 Score=51.33 Aligned_cols=84 Identities=15% Similarity=0.115 Sum_probs=60.1
Q ss_pred CCceEEEee-cCCCccccccchHHHHHHhhCC--CcEEEEEeccc----------------------------Ccchhhh
Q 005108 628 PGVSVVHFK-SASNLHCKQISPYVETLCGRYP--SINFLKVDIDE----------------------------SPGVAHA 676 (714)
Q Consensus 628 ~~~~vv~f~-a~~c~~C~~~~p~l~~l~~~~~--~~~~~~vd~d~----------------------------~~~l~~~ 676 (714)
++.+|+.|| +.||+.|....+.+.++..++. ++.++.|..|. ..+++..
T Consensus 26 Gk~vVL~Fyp~~~tp~C~~e~~~~~~~~~~~~~~~~~vigIS~d~~~~~~~~~~~~~~~~~~~~~~f~llsD~~~~~~~~ 105 (158)
T d1zyea1 26 GKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDVNCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISRD 105 (158)
T ss_dssp TSEEEEEECSCTTCSSSHHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSEEEECTTSHHHHH
T ss_pred CCeEEEEEeehhcCCccccchhhHHHhHHHhhcCCceEEeccCcCHHHHHHHHhhhHhhccccccccccccccccHHHHH
Confidence 347889999 8899999998899988887773 56666666542 3345778
Q ss_pred CCccccc-------eEEEEeCCeEEEEEcCC-----CHHHHHHHHhh
Q 005108 677 ENVRIVP-------TFKIYKNGSRMKEIVCP-----SRDMLEHSVRH 711 (714)
Q Consensus 677 ~~v~~~P-------t~~~~~~G~~~~~~~g~-----~~~~l~~~~~~ 711 (714)
|+|...+ ||+|-++|.++...++. +.+++.+.|+.
T Consensus 106 ygv~~~~~g~~~R~tfvID~~G~I~~~~i~~~~~~~~~~EiL~~lka 152 (158)
T d1zyea1 106 YGVLLEGPGLALRGLFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKA 152 (158)
T ss_dssp TTCEETTTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHH
T ss_pred HHhccccCCccccEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHH
Confidence 8887433 45555999998765443 56777777764
|
| >d1uula_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue) species: Trypanosoma cruzi [TaxId: 5693]
Probab=95.86 E-value=0.0065 Score=54.34 Aligned_cols=84 Identities=13% Similarity=0.061 Sum_probs=62.8
Q ss_pred CCceEEEee-cCCCccccccchHHHHHHhhCC--CcEEEEEeccc----------------------------Ccchhhh
Q 005108 628 PGVSVVHFK-SASNLHCKQISPYVETLCGRYP--SINFLKVDIDE----------------------------SPGVAHA 676 (714)
Q Consensus 628 ~~~~vv~f~-a~~c~~C~~~~p~l~~l~~~~~--~~~~~~vd~d~----------------------------~~~l~~~ 676 (714)
.+.+|+.|| +.||+.|....+.+.++..++. ++.++-|.+|. ..+++.+
T Consensus 33 GK~vVL~FyP~~~t~~C~~E~~~f~~~~~~f~~~g~~VlgIS~Ds~~s~~~~~~~~~~~~~~~~l~fpllsD~~~~v~~~ 112 (194)
T d1uula_ 33 GKWLVLFFYPMDFTFVCPTEICQFSDRVKEFSDIGCEVLACSMDSEYSHLAWTSIERKRGGLGQMNIPILADKTKCIMKS 112 (194)
T ss_dssp TSEEEEEECSCTTCSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSCEEECTTCHHHHH
T ss_pred CCeEEEEEEeCCccccchhhhhHHHhhhhhhccCceEEEEEecCchhhhhhhhhhhhhhccccCCCcceeeCCcchHHHH
Confidence 357888898 8999999999999999888874 58888887652 4467889
Q ss_pred CCcc------ccc-eEEEEeCCeEEEEEc-----CCCHHHHHHHHhh
Q 005108 677 ENVR------IVP-TFKIYKNGSRMKEIV-----CPSRDMLEHSVRH 711 (714)
Q Consensus 677 ~~v~------~~P-t~~~~~~G~~~~~~~-----g~~~~~l~~~~~~ 711 (714)
|||. ..| ||+|-++|.++...+ |.+.+++...|+.
T Consensus 113 ygv~~~~~~~~~R~tfvID~~G~I~~~~~~~~~~~r~~~E~Lr~l~a 159 (194)
T d1uula_ 113 YGVLKEEDGVAYRGLFIIDPKQNLRQITVNDLPVGRDVDEALRLVKA 159 (194)
T ss_dssp HTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHH
T ss_pred cCCeeccCCceEEEEEEECCCCeEEEEEEecCCCCcCHHHHHHHHHH
Confidence 9994 345 455559999987654 3367777777654
|
| >d1ktea_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Glutaredoxin (Grx, thioltransferase) species: Pig (Sus scrofa) [TaxId: 9823]
Probab=95.50 E-value=0.0027 Score=50.63 Aligned_cols=62 Identities=15% Similarity=0.233 Sum_probs=46.8
Q ss_pred EEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCcc-----hhhhCCccccceEEEEeCCeEEE
Q 005108 632 VVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPG-----VAHAENVRIVPTFKIYKNGSRMK 695 (714)
Q Consensus 632 vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~-----l~~~~~v~~~Pt~~~~~~G~~~~ 695 (714)
|+.|..+||+.|......|.++...+..+.+..+|++.... +.+..+.+.+|+++ .+|+.+.
T Consensus 14 Vviysk~~Cp~C~~ak~ll~~~~~~~~~~~~~e~d~~~d~~~~~~~l~~~~g~~tvPqIf--i~g~~IG 80 (105)
T d1ktea_ 14 VVVFIKPTCPFCRKTQELLSQLPFKEGLLEFVDITATSDTNEIQDYLQQLTGARTVPRVF--IGKECIG 80 (105)
T ss_dssp EEEEECSSCHHHHHHHHHHHHSCBCTTSEEEEEGGGSTTHHHHHHHHHHHHSCCCSCEEE--ETTEEEE
T ss_pred EEEEECCCCchHHHHHHHHHHhCCccceeeeeecccccccHHHHHHHhhccCCCcCcEEE--ECCEEEe
Confidence 67889999999999999998887777778888888776543 23344778889774 4887553
|
| >d1xvqa_ c.47.1.10 (A:) Thiol peroxidase Tpx {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thiol peroxidase Tpx species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.27 E-value=0.05 Score=47.05 Aligned_cols=82 Identities=9% Similarity=0.081 Sum_probs=52.7
Q ss_pred CCceEEEeec-CCCccccccchHHHHHHhhCCCcEEEEEeccc----------------------CcchhhhCCcc----
Q 005108 628 PGVSVVHFKS-ASNLHCKQISPYVETLCGRYPSINFLKVDIDE----------------------SPGVAHAENVR---- 680 (714)
Q Consensus 628 ~~~~vv~f~a-~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~----------------------~~~l~~~~~v~---- 680 (714)
.+.+|+.||. .||+.|....+.+.+..... ++.++-|.+|. ...++..|++.
T Consensus 43 Gk~vvl~f~~~~~~p~C~~e~~~l~~~~~~~-g~~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 121 (166)
T d1xvqa_ 43 GKSVLLNIFPSVDTPVCATSVRTFDERAAAS-GATVLCVSKDLPFAQKRFCGAEGTENVMPASAFRDSFGEDYGVTIADG 121 (166)
T ss_dssp TSCEEEEECSCCCSSCCCHHHHHHHHHHHHT-TCEEEEEESSCHHHHTTCC------CEEEEECTTSSHHHHTTCBBCSS
T ss_pred CcEEEEEeeecccccccHHHHHHHhhhcccc-cccccccccchHHHHHHHHHHhCCcccccccchhHHHHHHhCeeeccC
Confidence 3578888884 57888998888877766553 56677666554 23345666664
Q ss_pred -----ccceEEEE-eCCeEEEEEcCC------CHHHHHHHHh
Q 005108 681 -----IVPTFKIY-KNGSRMKEIVCP------SRDMLEHSVR 710 (714)
Q Consensus 681 -----~~Pt~~~~-~~G~~~~~~~g~------~~~~l~~~~~ 710 (714)
..|+++++ ++|+++...+.. +.+++...|+
T Consensus 122 ~~~g~~~ra~fvID~~G~I~y~~~~~~~~~~~~~d~il~aL~ 163 (166)
T d1xvqa_ 122 PMAGLLARAIVVIGADGNVAYTELVPEIAQEPNYEAALAALG 163 (166)
T ss_dssp TTTTSBCSEEEEECTTSBEEEEEECSBTTCCCCHHHHHHHHH
T ss_pred cccCceeeEEEEEeCCCEEEEEEEcCCCCCCCCHHHHHHHHH
Confidence 13455544 999998765432 4566666554
|
| >d1fvka_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: DsbA-like domain: Disulfide-bond formation facilitator (DsbA) species: Escherichia coli [TaxId: 562]
Probab=95.03 E-value=0.01 Score=52.78 Aligned_cols=39 Identities=21% Similarity=0.301 Sum_probs=27.3
Q ss_pred CceEEEeecCCCccccccchHHHHH---HhhCC-CcEEEEEec
Q 005108 629 GVSVVHFKSASNLHCKQISPYVETL---CGRYP-SINFLKVDI 667 (714)
Q Consensus 629 ~~~vv~f~a~~c~~C~~~~p~l~~l---~~~~~-~~~~~~vd~ 667 (714)
.+.|+.|..-.|+.|+.+.+.+..+ ...++ .+.|....+
T Consensus 19 ~~~VvEffdy~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 61 (188)
T d1fvka_ 19 APQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPEGVKMTKYHV 61 (188)
T ss_dssp CCSEEEEECTTCHHHHHHHHTTCHHHHHHTTSCTTCCEEEEEC
T ss_pred CCEEEEEECCCChhhHHHHHHHHHHHHHhhccCCceEEEEEec
Confidence 4678899999999999999876443 33444 366665543
|
| >d2djka1 c.47.1.2 (A:1-133) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Fungi (Humicola insolens) [TaxId: 34413]
Probab=94.98 E-value=0.03 Score=46.43 Aligned_cols=93 Identities=16% Similarity=0.141 Sum_probs=68.2
Q ss_pred hHHhhhccCCCceEEEeecCCCccccccchHHHHHHhhCCC-cEEEEEecccCcchhhhCCc--cccceEEEE-eCCeEE
Q 005108 619 EQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYPS-INFLKVDIDESPGVAHAENV--RIVPTFKIY-KNGSRM 694 (714)
Q Consensus 619 e~~~~~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~-~~~~~vd~d~~~~l~~~~~v--~~~Pt~~~~-~~G~~~ 694 (714)
+.+......+.+.++.|+... .....+...+.+++.++.+ +.|+.+|.++.+...+.||+ ...|.++|+ .++...
T Consensus 14 ~n~~~~~~~~~pl~~lf~~~~-~~~~~~~~~~~~vA~~~~~ki~Fv~vd~~~~~~~l~~~gl~~~~~P~~~i~~~~~~~~ 92 (133)
T d2djka1 14 ETYSDYMSAGIPLAYIFAETA-EERKELSDKLKPIAEAQRGVINFGTIDAKAFGAHAGNLNLKTDKFPAFAIQEVAKNQK 92 (133)
T ss_dssp HHHHHHHHTTSCEEEEECSCS-SSHHHHHHHHHHHHHSSTTTSEEEEECTTTTGGGTTTTTCCSSSSSEEEEECTTTCCB
T ss_pred hhHHHHhcCCCCEEEEEeCCc-hHHHHHHHHHHHHHHHhcCceEEEEEeHHHhHHHHHHhcCCcccCCcEEEEEcCCCce
Confidence 455555555666666666543 3456778889999999865 99999999999999999998 468998888 344434
Q ss_pred EEE--cCC-CHHHHHHHHhhh
Q 005108 695 KEI--VCP-SRDMLEHSVRHY 712 (714)
Q Consensus 695 ~~~--~g~-~~~~l~~~~~~~ 712 (714)
..+ .+. +.+.|+++|+.+
T Consensus 93 ~~~~~~~~i~~~~i~~Fi~d~ 113 (133)
T d2djka1 93 FPFDQEKEITFEAIKAFVDDF 113 (133)
T ss_dssp CCCCSSSCCCHHHHHHHHHHH
T ss_pred ecCCccccCCHHHHHHHHHHH
Confidence 333 344 899999999875
|
| >d1fova_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli, Grx3 [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Glutaredoxin (Grx, thioltransferase) species: Escherichia coli, Grx3 [TaxId: 562]
Probab=94.67 E-value=0.013 Score=44.03 Aligned_cols=56 Identities=13% Similarity=0.264 Sum_probs=41.2
Q ss_pred EEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCcch----hhhCCccccceEEEEeCCeEE
Q 005108 632 VVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGV----AHAENVRIVPTFKIYKNGSRM 694 (714)
Q Consensus 632 vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~l----~~~~~v~~~Pt~~~~~~G~~~ 694 (714)
|..|..+||+.|.+....|++. ++.|..+|++..+.. .+..|.+.+|.++ .+|+.+
T Consensus 3 I~iys~~~Cp~C~~ak~~L~~~-----~i~y~~~di~~~~~~~~~~~~~~g~~tvP~i~--i~~~~I 62 (82)
T d1fova_ 3 VEIYTKETCPYCHRAKALLSSK-----GVSFQELPIDGNAAKREEMIKRSGRTTVPQIF--IDAQHI 62 (82)
T ss_dssp EEEEECSSCHHHHHHHHHHHHH-----TCCCEEEECTTCSHHHHHHHHHHSSCCSCEEE--ETTEEE
T ss_pred EEEEeCCCCHhHHHHHHHHHHc-----CCCeEEEeccchHHHHHHHHHHhCCCCCCeEE--ECCEEE
Confidence 4567789999999988887664 456778888876654 3445888999764 488754
|
| >d1n8ja_ c.47.1.10 (A:) Alkyl hydroperoxide reductase AhpC {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Alkyl hydroperoxide reductase AhpC species: Salmonella typhimurium [TaxId: 90371]
Probab=94.58 E-value=0.052 Score=47.75 Aligned_cols=84 Identities=12% Similarity=0.019 Sum_probs=59.3
Q ss_pred CCceEEEee-cCCCccccccchHHHHHHhhCC--CcEEEEEeccc-------------------------CcchhhhCCc
Q 005108 628 PGVSVVHFK-SASNLHCKQISPYVETLCGRYP--SINFLKVDIDE-------------------------SPGVAHAENV 679 (714)
Q Consensus 628 ~~~~vv~f~-a~~c~~C~~~~p~l~~l~~~~~--~~~~~~vd~d~-------------------------~~~l~~~~~v 679 (714)
...+|+.|| ..||+.|....+.+.+...++. ++.++-|.+|. ..+++++|||
T Consensus 30 Gk~vVL~FyP~~~tp~C~~e~~~f~~~~~~f~~~~~~v~gIS~Ds~~sh~~f~~~~~~~~~~~fpllsD~~~~v~~~yGv 109 (186)
T d1n8ja_ 30 GRWSVFFFYPADFTFVSPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFDN 109 (186)
T ss_dssp TSEEEEEECSCTTCSHHHHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHHHCTTGGGCCSEEEECTTSHHHHHTTC
T ss_pred CCeEEEEEEeccCCCccHHHHHHHHHhhhhcccccEEEEeccccCHHHHHHHhccccccccccccccccHHHHHHHHhCC
Confidence 346888898 6789999999999988888773 56777666553 4456889998
Q ss_pred c----c--cce-EEEEeCCeEEEEEc-----CCCHHHHHHHHhh
Q 005108 680 R----I--VPT-FKIYKNGSRMKEIV-----CPSRDMLEHSVRH 711 (714)
Q Consensus 680 ~----~--~Pt-~~~~~~G~~~~~~~-----g~~~~~l~~~~~~ 711 (714)
. + .|+ |+|-++|.++...+ |.+.+++.+.|+.
T Consensus 110 ~~~~~g~~~r~tfiID~~G~Ir~~~v~~~~~~r~~~eiL~~lka 153 (186)
T d1n8ja_ 110 MREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKA 153 (186)
T ss_dssp EETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHH
T ss_pred CcccCCcceeeEEEECchheEEEEeecCCCcccCHHHHHHHHHH
Confidence 5 3 344 44559999876543 3466776666654
|
| >d1nm3a1 c.47.1.1 (A:166-239) C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: C-terminal, Grx domain of Hybrid-Prx5 species: Haemophilus influenzae [TaxId: 727]
Probab=94.14 E-value=0.029 Score=41.05 Aligned_cols=58 Identities=14% Similarity=0.255 Sum_probs=41.4
Q ss_pred eEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCcc---hhhhCCccccceEEEEeCCeEEE
Q 005108 631 SVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPG---VAHAENVRIVPTFKIYKNGSRMK 695 (714)
Q Consensus 631 ~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~---l~~~~~v~~~Pt~~~~~~G~~~~ 695 (714)
.|+.|..++|+.|.++...|++. ++.|..+|+++.+. +.+..+...+|.++ .+|+.+.
T Consensus 6 ~I~iYs~~~C~~C~~ak~lL~~~-----~i~~~~~~v~~~~~~~~~~~~~~~~tvP~i~--i~g~~IG 66 (74)
T d1nm3a1 6 SISIFTKPGCPFCAKAKQLLHDK-----GLSFEEIILGHDATIVSVRAVSGRTTVPQVF--IGGKHIG 66 (74)
T ss_dssp CEEEEECSSCHHHHHHHHHHHHH-----TCCCEEEETTTTCCHHHHHHHTCCSSSCEEE--ETTEEEE
T ss_pred cEEEEECCCCHHHHHHHHHHHHc-----CCCeEEEEccCcHHHHHHHHHhCCccCCEEE--ECCEEEE
Confidence 36778899999999998888765 35566677766443 34456888999864 4776553
|
| >d2h01a1 c.47.1.10 (A:2-171) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Plasmodium yoelii [TaxId: 5861]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) species: Plasmodium yoelii [TaxId: 5861]
Probab=94.06 E-value=0.067 Score=46.36 Aligned_cols=84 Identities=15% Similarity=0.191 Sum_probs=59.8
Q ss_pred CceEEEee-cCCCccccccchHHHHHHhhCC--CcEEEEEeccc----------------------------CcchhhhC
Q 005108 629 GVSVVHFK-SASNLHCKQISPYVETLCGRYP--SINFLKVDIDE----------------------------SPGVAHAE 677 (714)
Q Consensus 629 ~~~vv~f~-a~~c~~C~~~~p~l~~l~~~~~--~~~~~~vd~d~----------------------------~~~l~~~~ 677 (714)
+.+|+.|| +.||+.|......+.+...++. ++.++-|..|. ..+++++|
T Consensus 28 k~vVl~FyP~~~tp~Ct~e~~~f~~~~~~f~~~g~~vigIS~D~~~~~~~~~~~~~~~~~~~~~~f~llsD~~~~~~~~y 107 (170)
T d2h01a1 28 KYVLLYFYPLDFTFVCPSEIIALDKALDSFKERNVELLGCSVDSKFTHLAWKKTPLSQGGIGNIKHTLISDISKSIARSY 107 (170)
T ss_dssp CEEEEEECSCSSCSSCCHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSEEEECTTSHHHHHT
T ss_pred CeEEEEEECCCCCCccchhhHHHhhhhhhhhcCCeeEecccCCcHHHHHhHhhhhhhhccccccCCceeEcCccHHHHHh
Confidence 46777787 7999999998888888777763 57788887662 34568899
Q ss_pred Cccc-----cce-EEEEeCCeEEEEEcCC-----CHHHHHHHHhhh
Q 005108 678 NVRI-----VPT-FKIYKNGSRMKEIVCP-----SRDMLEHSVRHY 712 (714)
Q Consensus 678 ~v~~-----~Pt-~~~~~~G~~~~~~~g~-----~~~~l~~~~~~~ 712 (714)
||.. .++ |+|-++|.+....+.. +.+++.+.|+.+
T Consensus 108 gv~~~~~~~~R~tfiId~~G~I~~~~~~~~~~~~~~~eil~~l~~l 153 (170)
T d2h01a1 108 DVLFNESVALRAFVLIDKQGVVQHLLVNNLALGRSVDEILRLIDAL 153 (170)
T ss_dssp TCEETTTEECCEEEEECTTSBEEEEEEGGGSSGGGHHHHHHHHHHH
T ss_pred CCccccccceeeeEEEcCCCeEEEEEEecCCCCCCHHHHHHHHHHh
Confidence 8842 344 5555999988766433 456777776653
|
| >d1q98a_ c.47.1.10 (A:) Thiol peroxidase Tpx {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thiol peroxidase Tpx species: Haemophilus influenzae [TaxId: 727]
Probab=93.97 E-value=0.067 Score=46.07 Aligned_cols=73 Identities=8% Similarity=0.065 Sum_probs=51.3
Q ss_pred CCceEEEee-cCCCccccccchHHHHHHhhCCCcEEEEEeccc-----------------------CcchhhhCCcc---
Q 005108 628 PGVSVVHFK-SASNLHCKQISPYVETLCGRYPSINFLKVDIDE-----------------------SPGVAHAENVR--- 680 (714)
Q Consensus 628 ~~~~vv~f~-a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~-----------------------~~~l~~~~~v~--- 680 (714)
.+.+|+.|| ..||+.|....+.+.+...++.++.++-|.+|. ...++..|++.
T Consensus 42 Gk~vVL~f~p~~~tp~C~~e~~~~~~~~~~~~~~~vi~iS~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 121 (164)
T d1q98a_ 42 SKRKVLNIFPSIDTGVCATSVRKFNQQAAKLSNTIVLCISADLPFAQARFCGAEGIENAKTVSTFRNHALHSQLGVDIQT 121 (164)
T ss_dssp TSEEEEEECSCSCSSCCCHHHHHHHHHHHHSTTEEEEEEESSCHHHHTTCTTTTTCTTEEEEECTTCTHHHHHTTCEECS
T ss_pred CcEEEEEecCccccCcccHHHHHHHHHHHHhccceEEeecCCcHHHHHHHHHHhCCccccccccccchhHHHhhceeccc
Confidence 346777788 557888999999999988888887777776653 23345566664
Q ss_pred ----cc--ceEEEE-eCCeEEEEEcCC
Q 005108 681 ----IV--PTFKIY-KNGSRMKEIVCP 700 (714)
Q Consensus 681 ----~~--Pt~~~~-~~G~~~~~~~g~ 700 (714)
++ |+++|+ ++|+++..-+..
T Consensus 122 ~~~~g~~~Ra~fvID~~G~I~y~~~~~ 148 (164)
T d1q98a_ 122 GPLAGLTSRAVIVLDEQNNVLHSQLVE 148 (164)
T ss_dssp STTTTSBCCEEEEECTTSBEEEEEECS
T ss_pred CccccCcccEEEEECCCCEEEEEEECC
Confidence 22 555555 899998765544
|
| >d2b5ea3 c.47.1.2 (A:240-364) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.52 E-value=0.064 Score=43.76 Aligned_cols=93 Identities=16% Similarity=0.178 Sum_probs=67.2
Q ss_pred hHHhhhccCCCceEEEeecCCCccccccchHHHHHHhhCCC-cEEEEEecccCcchhhhCCccc-cceEEEEe-CCeEEE
Q 005108 619 EQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYPS-INFLKVDIDESPGVAHAENVRI-VPTFKIYK-NGSRMK 695 (714)
Q Consensus 619 e~~~~~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~-~~~~~vd~d~~~~l~~~~~v~~-~Pt~~~~~-~G~~~~ 695 (714)
+.+...+..+.+.++.|+...- .-..+...+.+++.++.+ +.|+.+|.++....++.||+.. .|.+.++. +.....
T Consensus 8 ~~~~~y~~~~~Pl~~~f~~~~~-~~~~~~~~~~~vAk~fkgki~Fv~~D~~~~~~~l~~fgl~e~~P~~~i~~~~~~~ky 86 (125)
T d2b5ea3 8 SVFAQYVESGLPLGYLFYNDEE-ELEEYKPLFTELAKKNRGLMNFVSIDARKFGRHAGNLNMKEQFPLFAIHDMTEDLKY 86 (125)
T ss_dssp HHHHHHHHTTSCEEEEEESSHH-HHHHHHHHHHHHHHHTTTTCEEEEEEHHHHTTHHHHTTCCSCSSEEEEEETTTTEEE
T ss_pred HHHHHHHhcCCCEEEEEeCChH-HHHHHHHHHHHHHHHhcCeeEEEEEchHHhHHHHHHcCCCccCCcEEEEecccCccc
Confidence 4455555555566666766432 345678888999999976 9999999999888999999965 89888773 333333
Q ss_pred EEc-------------CC-CHHHHHHHHhhh
Q 005108 696 EIV-------------CP-SRDMLEHSVRHY 712 (714)
Q Consensus 696 ~~~-------------g~-~~~~l~~~~~~~ 712 (714)
.+. +. +.+.|+++++.|
T Consensus 87 ~~~~~~~~~~~~~~~~~e~t~~~i~~F~~d~ 117 (125)
T d2b5ea3 87 GLPQLSEEAFDELSDKIVLESKAIESLVKDF 117 (125)
T ss_dssp ECCCCCHHHHHTCCSCCCCCHHHHHHHHHHH
T ss_pred ccchhhhhhcccccccccCCHHHHHHHHHHH
Confidence 332 44 899999999876
|
| >d1qmva_ c.47.1.10 (A:) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.72 E-value=0.11 Score=45.95 Aligned_cols=84 Identities=17% Similarity=0.100 Sum_probs=59.6
Q ss_pred CCceEEEee-cCCCccccccchHHHHHHhhCC--CcEEEEEeccc----------------------------Ccchhhh
Q 005108 628 PGVSVVHFK-SASNLHCKQISPYVETLCGRYP--SINFLKVDIDE----------------------------SPGVAHA 676 (714)
Q Consensus 628 ~~~~vv~f~-a~~c~~C~~~~p~l~~l~~~~~--~~~~~~vd~d~----------------------------~~~l~~~ 676 (714)
.+.+|+.|| ..||+.|......+.++..++. ++.++-|.+|. ..+++.+
T Consensus 34 Gk~~vL~FyP~~~tp~C~~e~~~~~~~~~~f~~~g~~vigIS~D~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~va~~ 113 (197)
T d1qmva_ 34 GKYVVLFFYPLDFTFVCPTEIIAFSNRAEDFRKLGCEVLGVSVDSQFTHLAWINTPRKEGGLGPLNIPLLADVTRRLSED 113 (197)
T ss_dssp TSEEEEEECSCTTSSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSCEEECTTCHHHHH
T ss_pred CCeEEEEEecccccccchhhhHHHHHHHHHhccCCcEEEEEecCCHHHHHhhhcchhhhcCcCCCccceEeccchHHHHH
Confidence 346777787 8999999999999988888774 57777776552 4557889
Q ss_pred CCcc------ccc-eEEEEeCCeEEEEEcC-----CCHHHHHHHHhh
Q 005108 677 ENVR------IVP-TFKIYKNGSRMKEIVC-----PSRDMLEHSVRH 711 (714)
Q Consensus 677 ~~v~------~~P-t~~~~~~G~~~~~~~g-----~~~~~l~~~~~~ 711 (714)
|||. .++ ||+|-++|.++...+. .+.+++...|+.
T Consensus 114 ygv~~~~~g~~~R~tfiID~~g~Ir~~~~~~~~~~r~~~E~lr~l~a 160 (197)
T d1qmva_ 114 YGVLKTDEGIAYRGLFIIDGKGVLRQITVNDLPVGRSVDEALRLVQA 160 (197)
T ss_dssp TTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHH
T ss_pred hCCCcccCCeeeEEEEEECCCCcEEEEEecCCCcccCHHHHHHHHHh
Confidence 9986 234 4555599998765443 366777666654
|
| >d1prxa_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: 1-Cys peroxiredoxin species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.41 E-value=0.19 Score=45.34 Aligned_cols=84 Identities=11% Similarity=0.106 Sum_probs=59.6
Q ss_pred CceEEEee-cCCCccccccchHHHHHHhhCC--CcEEEEEeccc-------------------------------Ccchh
Q 005108 629 GVSVVHFK-SASNLHCKQISPYVETLCGRYP--SINFLKVDIDE-------------------------------SPGVA 674 (714)
Q Consensus 629 ~~~vv~f~-a~~c~~C~~~~p~l~~l~~~~~--~~~~~~vd~d~-------------------------------~~~l~ 674 (714)
+.+|+.|| +.||+.|......+.+...++. ++.++.|.+|. ..+++
T Consensus 28 k~vVLfFyP~dftpvC~~El~~~~~~~~~f~~~g~~v~giS~Ds~~sh~~~~~~~~~~~~~~~~~~l~fpllsD~~~~va 107 (220)
T d1prxa_ 28 SWGILFSHPRDFTPVCTTELGRAAKLAPEFAKRNVKLIALSIDSVEDHLAWSKDINAYNSEEPTEKLPFPIIDDRNRELA 107 (220)
T ss_dssp SEEEEEEESCSSCHHHHHHHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTSCCCSCCSSCEEECTTCHHH
T ss_pred CeEEEEEECCCCCCcchhhHHHHHHHHHHhhcccceeeccccccccchhhhhhhhhhccccccccCcccccccCcccHHH
Confidence 46677777 6899999999888888887774 46666665541 45678
Q ss_pred hhCCcc------------ccceE-EEEeCCeEEEEEcCC-----CHHHHHHHHhhh
Q 005108 675 HAENVR------------IVPTF-KIYKNGSRMKEIVCP-----SRDMLEHSVRHY 712 (714)
Q Consensus 675 ~~~~v~------------~~Pt~-~~~~~G~~~~~~~g~-----~~~~l~~~~~~~ 712 (714)
++|||. .++.+ +|-++|.+...++.+ +.+++...|+.+
T Consensus 108 ~~ygv~~~~~~~~~~~~~~~RatFIID~~g~Ir~~~~~~~~~gR~~dEiLr~l~al 163 (220)
T d1prxa_ 108 ILLGMLDPAEKDEKGMPVTARVVFVFGPDKKLKLSILYPATTGRNFDEILRVVISL 163 (220)
T ss_dssp HHTTSSCSCTTCSSSCCTTCCEEEEECTTSBEEEEEECCTTBCCCHHHHHHHHHHH
T ss_pred HHhCCccccccccccceeeeEEEEEEcCccceeEEEEecCCcccchHHHHHHHHHH
Confidence 899886 23444 444999998776544 677777766643
|
| >d2b7ka1 c.47.1.10 (A:111-279) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Glutathione peroxidase-like domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain species: Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.33 E-value=0.18 Score=42.83 Aligned_cols=36 Identities=14% Similarity=0.140 Sum_probs=24.6
Q ss_pred CCccccceEEEE-eCCeEEEEEcCC-CHHH----HHHHHhhh
Q 005108 677 ENVRIVPTFKIY-KNGSRMKEIVCP-SRDM----LEHSVRHY 712 (714)
Q Consensus 677 ~~v~~~Pt~~~~-~~G~~~~~~~g~-~~~~----l~~~~~~~ 712 (714)
+.|...|+++++ ++|+.+..+.+. +.+. |.+.|+++
T Consensus 125 ~~i~h~~~~fLID~~G~vv~~~~~~~~~~~~~~~I~e~ik~l 166 (169)
T d2b7ka1 125 YLVDHSIFFYLMDPEGQFVDALGRNYDEKTGVDKIVEHVKSY 166 (169)
T ss_dssp -CTTTCCCEEEECTTSCEEEEECTTCCTTHHHHHHHHHHHHC
T ss_pred ceeeccceEEEECCCCeEEEEECCCCCHHHHHHHHHHHHHHH
Confidence 356678877666 999999988765 5554 55555553
|
| >d2o02a1 a.118.7.1 (A:1-230) zeta isoform {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: 14-3-3 protein family: 14-3-3 protein domain: zeta isoform species: Cow (Bos taurus) [TaxId: 9913]
Probab=91.43 E-value=3.3 Score=36.85 Aligned_cols=59 Identities=14% Similarity=0.057 Sum_probs=42.6
Q ss_pred HHHHhHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-cCCHHHHHHHhhcc
Q 005108 354 HLSKCTDARKVGDWKSALREGDAAIAAGADFSPQLSMCRVEALLK-LHQLEDAESSLSNI 412 (714)
Q Consensus 354 ~~~~a~~~~~~g~~~~Al~~~~~al~~~p~~~~~~~~~la~~~~~-~g~~~~A~~~~~~a 412 (714)
++.++.+..+.++|++.+.+.+++++.+++....-...+..+|-. .|....+...+...
T Consensus 6 ~v~~Aklaeq~eRy~dm~~~mk~~~~~~~eLt~eERnLlsvayKn~i~~rR~s~R~l~~i 65 (230)
T d2o02a1 6 LVQKAKLAEQAERYDDMAACMKSVTEQGAELSNEERNLLSVAYKNVVGARRSSWRVVSSI 65 (230)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 455667788889999999999999999998877766666666543 35555555555544
|
| >d1bjxa_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: PDI-like domain: Protein disulfide isomerase, PDI species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.01 E-value=0.25 Score=38.91 Aligned_cols=93 Identities=11% Similarity=0.064 Sum_probs=65.7
Q ss_pred eehhhhHHhhhccCCCceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEecccCcchhhhCCccccceEEEEeCCeE
Q 005108 614 EVSSLEQFRAAVSLPGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAHAENVRIVPTFKIYKNGSR 693 (714)
Q Consensus 614 ~i~~~e~~~~~i~~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~ 693 (714)
.+.+.+..+..+....++||-|..... ......+.+++..+.++.|..+.. .+++..++|.. |++++||....
T Consensus 4 ~l~~~~~~e~f~~~~~v~VVGfF~~~~---~~~~~~F~~~A~~~~d~~F~~t~~---~~v~~~~~v~~-~~Ivl~k~~de 76 (110)
T d1bjxa_ 4 TLPDGAAAESLVESSEVAVIGFFKDVE---SDSAKQFLQAAEAIDDIPFGITSN---SDVFSKYQLDK-DGVVLFKKFDE 76 (110)
T ss_dssp ECCSHHHHHHHHHHSSEEEEEECTTTT---SHHHHHHHHHHHHCSSSCEEEECC---SHHHHHTTCSS-CEEEEEESSSS
T ss_pred EcCCHHHHHHHhccCCeEEEEEEcCCC---chHHHHHHHHHHhCcCceEEEECC---HHHHHHcCCCC-CeEEEeccCCc
Confidence 345566777777777888888876433 234556777777777777776543 45888999965 99999987554
Q ss_pred EE-EEcCC-CHHHHHHHHhhhc
Q 005108 694 MK-EIVCP-SRDMLEHSVRHYS 713 (714)
Q Consensus 694 ~~-~~~g~-~~~~l~~~~~~~~ 713 (714)
.. .+.|. +.+.|.+||....
T Consensus 77 ~~~~~~~~~~~~~l~~fi~~~~ 98 (110)
T d1bjxa_ 77 GRNNFEGEVTKENLLDFIKHNQ 98 (110)
T ss_dssp SBCCCCSCCCHHHHHHHHHHHS
T ss_pred cccccCCCCCHHHHHHHHHHcC
Confidence 43 34456 9999999998754
|
| >d2axoa1 c.47.1.19 (A:38-262) Hypothetical protein Atu2684 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Atu2684-like domain: Hypothetical protein Atu2684 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=90.88 E-value=0.37 Score=43.32 Aligned_cols=81 Identities=15% Similarity=0.060 Sum_probs=59.8
Q ss_pred CCceEEEeecCCCccccccchHHHHHHhhCCCcEEEEEeccc------------------CcchhhhCCccccceEEEEe
Q 005108 628 PGVSVVHFKSASNLHCKQISPYVETLCGRYPSINFLKVDIDE------------------SPGVAHAENVRIVPTFKIYK 689 (714)
Q Consensus 628 ~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~------------------~~~l~~~~~v~~~Pt~~~~~ 689 (714)
...+|..|.+.||..|-.....|.+|..+ +++..+..-+|. ....+..++...+||=-++.
T Consensus 5 ~~aVVElFTSqgCssCPpAd~~L~~L~~~-~~Vi~La~HVdYWd~lGw~D~fa~~~~t~RQ~~Y~~~~g~~~vyTPq~vv 83 (225)
T d2axoa1 5 VKGVVELFTSQGCASCPPADEALRKMIQK-GDVVGLSYHVDYWNYLGWTDSLASKENTERQYGYMRALGRNGVYTPQAIL 83 (225)
T ss_dssp CCCEEEEEECTTCTTCHHHHHHHHHHHHH-TSSEEEEEECSTTCSSSSCCTTCCHHHHHHHHHHHHHTTCSCCCSSEEEE
T ss_pred CCcEEEEeeCCCCCCCHHHHHHHHHhhCC-CCEEEEEeccccccccCCCCCCCCchhhHHHHHHHHhcCCCCCCceeEEE
Confidence 45688899999999999999999999765 666555444432 12236677999999877778
Q ss_pred CCeEEEEEcCCCHHHHHHHHhh
Q 005108 690 NGSRMKEIVCPSRDMLEHSVRH 711 (714)
Q Consensus 690 ~G~~~~~~~g~~~~~l~~~~~~ 711 (714)
||+. ..+|.+.+.+...|..
T Consensus 84 nG~~--~~~gs~~~~~~~~i~~ 103 (225)
T d2axoa1 84 NGRD--HVKGADVRGIYDRLDA 103 (225)
T ss_dssp TTTE--EEETTCHHHHHHHHHH
T ss_pred eCcc--cccccCHHHHHHHHHH
Confidence 9974 4467787878777765
|
| >d1wika_ c.47.1.1 (A:) Thioredoxin-like protein 2 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Thioltransferase domain: Thioredoxin-like protein 2 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=85.40 E-value=0.29 Score=38.51 Aligned_cols=51 Identities=24% Similarity=0.277 Sum_probs=34.8
Q ss_pred CCCccccccchHHHHHHhhCCCcEEEEEecccCcchhh----hCCccccceEEEEeCCeEEE
Q 005108 638 ASNLHCKQISPYVETLCGRYPSINFLKVDIDESPGVAH----AENVRIVPTFKIYKNGSRMK 695 (714)
Q Consensus 638 ~~c~~C~~~~p~l~~l~~~~~~~~~~~vd~d~~~~l~~----~~~v~~~Pt~~~~~~G~~~~ 695 (714)
+.|+.|.++...|+.+ ++.|..+|+++.+++.+ .-+...+|.+ |.+|+.+.
T Consensus 28 p~Cp~c~~ak~lL~~~-----~i~~~~~~v~~~~~~~~~l~~~t~~~TvPqI--Fi~g~~IG 82 (109)
T d1wika_ 28 AKCGFSKQILEILNST-----GVEYETFDILEDEEVRQGLKTFSNWPTYPQL--YVRGDLVG 82 (109)
T ss_dssp CCSSTHHHHHHHHHHT-----CSCEEEEESSSCHHHHHHHHHHHSCCSSCEE--ECSSSEEE
T ss_pred CCChHHHHHHHHHHhc-----CCCceEEEecccHHHHHHHHHhcCCCCCCeE--EECCEEEc
Confidence 6799999988877543 35677888888766533 3355666665 45887554
|
| >d1a8ya2 c.47.1.3 (A:127-228) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Thioredoxin fold superfamily: Thioredoxin-like family: Calsequestrin domain: Calsequestrin species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=84.23 E-value=1.7 Score=33.28 Aligned_cols=92 Identities=11% Similarity=0.106 Sum_probs=61.6
Q ss_pred eehhhhHHhhhcc-CCCceEEEeecCCCccccccchHHHHHHhhC-CCcEEEEEecccCcchhhhCCccccceEEEEeCC
Q 005108 614 EVSSLEQFRAAVS-LPGVSVVHFKSASNLHCKQISPYVETLCGRY-PSINFLKVDIDESPGVAHAENVRIVPTFKIYKNG 691 (714)
Q Consensus 614 ~i~~~e~~~~~i~-~~~~~vv~f~a~~c~~C~~~~p~l~~l~~~~-~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G 691 (714)
.+.+.++++..+. ...++||=|....-.. ....+.+++..+ +++.|..+ .+.++++.++| ..|++++|+.=
T Consensus 3 ~i~~~~e~~~F~~~~d~v~VvGfF~~~~~~---~~~~F~~~A~~~rd~~~F~~t---~d~~va~~~~v-~~~~vvlfr~f 75 (102)
T d1a8ya2 3 LIEGERELQAFENIEDEIKLIGYFKNKDSE---HYKAFKEAAEEFHPYIPFFAT---FDSKVAKKLTL-KLNEIDFYEAF 75 (102)
T ss_dssp EECSHHHHHHHTTCCSSCEEEEECSSTTCH---HHHHHHHHHHHHTTTSCEEEE---CCHHHHHHHCC-CTTCEEEECTT
T ss_pred eecCHHHHHHHhccCCCEEEEEEECCCCcH---HHHHHHHHHHHcCCCceEEEE---CCHHHHHHcCC-CCCCEEEeeec
Confidence 4556667777775 4568888887643332 344455555555 56777665 45678999999 48999999653
Q ss_pred -eEEEEEcCC--CHHHHHHHHhhh
Q 005108 692 -SRMKEIVCP--SRDMLEHSVRHY 712 (714)
Q Consensus 692 -~~~~~~~g~--~~~~l~~~~~~~ 712 (714)
+....+-|. +.+.|..||+.+
T Consensus 76 de~~~~~~~~~~t~~~i~~Fi~~n 99 (102)
T d1a8ya2 76 MEEPVTIPDKPNSEEEIVNFVEEH 99 (102)
T ss_dssp CSSEEECSSSSCCHHHHHHHHHHT
T ss_pred CCCceecCCCCCCHHHHHHHHHHh
Confidence 223344463 899999999865
|
| >d1o9da_ a.118.7.1 (A:) 14-3-3-like protein C {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: 14-3-3 protein family: 14-3-3 protein domain: 14-3-3-like protein C species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=83.21 E-value=15 Score=32.53 Aligned_cols=58 Identities=5% Similarity=-0.019 Sum_probs=35.9
Q ss_pred HHHHhHHHHHcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHH-cCCHHHHHHHhhc
Q 005108 354 HLSKCTDARKVGDWKSALREGDAAIAA--GADFSPQLSMCRVEALLK-LHQLEDAESSLSN 411 (714)
Q Consensus 354 ~~~~a~~~~~~g~~~~Al~~~~~al~~--~p~~~~~~~~~la~~~~~-~g~~~~A~~~~~~ 411 (714)
++.++.+..+.++|++.+.+.+++++. +++....=...+..+|-. .|....+...+..
T Consensus 7 lv~~AklaeqaeRy~dm~~~mk~v~~~~~~~~Ls~eERnLlsvayKn~i~~~R~s~r~l~~ 67 (236)
T d1o9da_ 7 NVYMAKLAEQAERYEEMVEFMEKVSNSLGSEELTVEERNLLSVAYKNVIGARRASWRIISS 67 (236)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 445566677788899999888888887 566555555545555432 2334444444443
|